Query 002615
Match_columns 900
No_of_seqs 635 out of 4867
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 16:22:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002615.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1333-1336//hhsearch_pdb/002615hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 1.0 1 1 539.6 36.0 396 2-425 639-1043(1304)
2 4dg8_A PA1221; ANL superfamily 1.0 1 1 516.4 28.4 389 3-425 197-596 (620)
3 3rg2_A Enterobactin synthase c 1.0 1 1 487.6 34.4 385 3-424 218-615 (617)
4 1amu_A GRSA, gramicidin synthe 1.0 1 1 414.7 29.6 341 3-377 216-559 (563)
5 1pg4_A Acetyl-COA synthetase; 1.0 1 1 413.0 31.8 325 3-347 291-623 (652)
6 3tsy_A Fusion protein 4-coumar 1.0 1 1 406.7 21.2 321 3-351 263-588 (979)
7 3ni2_A 4-coumarate:COA ligase; 1.0 1 1 403.4 33.1 314 3-344 216-534 (536)
8 3g7s_A Long-chain-fatty-acid-- 1.0 1 1 402.2 26.8 320 3-346 214-543 (549)
9 4gr5_A Non-ribosomal peptide s 1.0 1 1 402.1 20.6 319 3-342 247-568 (570)
10 1ry2_A Acetyl-coenzyme A synth 1.0 1 1 400.6 26.3 325 3-346 297-638 (663)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=539.55 Aligned_cols=396 Identities=23% Similarity=0.420 Sum_probs=346.7
Q ss_pred CCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 76589998848998067404748999999989199599569145323699999999983801999047899999998750
Q 002615 2 QDLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 2 ~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 81 (900)
.+.++++++|++++.+|++|+.++.++|.+|..|+++++++ .....+|..+.+.++++++|++.++|++++.+.+....
T Consensus 639 ~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~-~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~ 717 (1304)
T 2vsq_A 639 VDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIAD-EHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED 717 (1304)
T ss_dssp CCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECC-GGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH
T ss_pred HHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEECC-HHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHCHH
T ss_conf 98619898887999787129999999999997077999888-12108999999999982995999659999999851400
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCE
Q ss_conf 45889999957999963689964699998659995599500742113551000036886100037888520320258948
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.+++||.+++|||++++.+.+.|.+.+++.+++|.||+||++++++...+...+ .....+++|+|++++.
T Consensus 718 -----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~-----~~~~~~~iG~p~~~~~ 787 (1304)
T 2vsq_A 718 -----WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP-----DSISSLPIGKPISNAS 787 (1304)
T ss_dssp -----HHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCC-----SSCSSCCCBEECTTEE
T ss_pred -----CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHEEEECCCCC-----CCCCCCCCCEEECCCE
T ss_conf -----178864899946889999999999868998799827756875876065455766-----6677798850407978
Q ss_pred EEEECCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEEC
Q ss_conf 99965999---899966899926531521259998781001024776655676788986357529628980699399981
Q 002615 162 IVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 162 ~~i~d~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~G 238 (900)
++|+|+++ +.+..|||+|+|+++++||+++|+.|.+.|+..+.. .+++||+|||++++++||.++|+|
T Consensus 788 ~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~---------~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 788 VYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFK---------PGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp EEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTS---------TTCEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCC---------CCCEEEECCCEEEECCCCEEEEEC
T ss_conf 99989996999899844999833422723248964461431469999---------998168568768986998099976
Q ss_pred CCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 05992789956408478999994799900899997614883489999999538888638889999999982099784277
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 318 (900)
|+|+|||++|+||+|.|||++|.+||.|.+|+|+..++...+..+++|++.+... ..++++++++++||.||+|.
T Consensus 859 R~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~-----~~~~l~~~l~~~Lp~ymvP~ 933 (1304)
T 2vsq_A 859 RIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL-----SAEDVKAHLKKQLPAYMVPQ 933 (1304)
T ss_dssp EGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS-----CHHHHHHHHHHHSCGGGSCS
T ss_pred CCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCCC-----CHHHHHHHHHHHCHHHHHCC
T ss_conf 7789799898965889999999858997558999974699977999999678989-----99999999988680865153
Q ss_pred EEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 79981875799999731342113343322346676543100899999999831039720236898001586659999999
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVA 398 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~~GgdSl~a~~l~ 398 (900)
.++++++||+|++|||||++|++....... .....+.+++|+.++++|+++|+.+.|+.+++||++|||||+|++|+
T Consensus 934 ~~~~l~~lP~t~~GKidR~~L~~~~~~~~~---~~~~~p~~~~e~~l~~~~~~vL~~~~i~~~~~ff~lGg~Sl~a~~l~ 1010 (1304)
T 2vsq_A 934 TFTFLDELPLTTNGKVNKRLLPKPDQDQLA---EEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHALKAMTAA 1010 (1304)
T ss_dssp EEEEESCCCCCSSCSSCCSCCCCCCGGGGC---CCCCCCSSHHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCHHHCCCCCHHHHC---CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHH
T ss_conf 799904567998866277655785301200---12468998488999999998719986577789888089769999999
Q ss_pred HHHC------CCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 9919------87102131799899999998512
Q 002615 399 HNLG------IDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 399 ~~l~------~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
++|+ +++..+|++||++.|+.++....
T Consensus 1011 ~~l~~~~g~~l~~~~~~~~~ti~~la~~~~~~~ 1043 (1304)
T 2vsq_A 1011 SRIKKELGIDLPVKLLFEAPTIAGISAYLKNGG 1043 (1304)
T ss_dssp HHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCC
T ss_conf 999998689988999972899999999987227
No 2
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=1.00 E-value=1 Score=516.42 Aligned_cols=389 Identities=21% Similarity=0.271 Sum_probs=330.7
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 65899988489980674047489999999891995995691453236999999999838019990478999999987504
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~ 82 (900)
..+++.++|++++.+|++|+.++.++|.++..|+++++++. ...+|..+.+.++++++|++.++|++++.+......
T Consensus 197 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~- 273 (620)
T 4dg8_A 197 SFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL--GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD- 273 (620)
T ss_dssp GGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS--SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG-
T ss_pred HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEECCC--CCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCHH-
T ss_conf 85088988889998960899999999999966889996863--458999999999983991999059999999854812-
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf 58899999579999636899646999986599955995007421135510000368861000378885203202589489
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
.+++||.+++|||++++.+.+++.+.+++++++|.||+||++.++++...... ......+++|+|++++.+
T Consensus 274 ----~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-----~~~~~~~~iG~p~~~~~~ 344 (620)
T 4dg8_A 274 ----CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD-----DLEEDDIPIGKAIAGTAV 344 (620)
T ss_dssp ----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTG-----GGGSSSCCCBEECTTEEE
T ss_pred ----HCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHEEEEECCCC-----CCCCCCCCCEECCCCCEE
T ss_conf ----27882589998176999999999986899289952765142041278743565-----567898872215168189
Q ss_pred EEECCCCC----CCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEEC
Q ss_conf 99659998----99966899926531521259998781001024776655676788986357529628980699399981
Q 002615 163 VLVESDTV----KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 238 (900)
Q Consensus 163 ~i~d~~~~----~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~G 238 (900)
+|+|+++. .++.|||+++|+++++||+++++.|.+.|...+... ...+||+|||++++++||.++|+|
T Consensus 345 ~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~--------~~~~~yrTGDl~~~~~dG~l~~~G 416 (620)
T 4dg8_A 345 LLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRG--------RLLRAYRTGDRARYDEQGRLRFIG 416 (620)
T ss_dssp EEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETT--------EEEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCC--------CCCEEEECCCEEEECCCCEEEEEC
T ss_conf 999865898799997049999466525545898246432201599899--------875189679879987997099974
Q ss_pred CCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 05992789956408478999994799900899997614883489999999538888638889999999982099784277
Q 002615 239 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 318 (900)
Q Consensus 239 R~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 318 (900)
|+||+||++|+||+|.|||++|.+||.|.+|+|++.++..... ++++++.... .++++++++||.||+|.
T Consensus 417 R~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~~~~---------~~~~~l~~~Lp~y~~P~ 486 (620)
T 4dg8_A 417 RGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTGKAD---------ASPQALLRQLPTWQRPH 486 (620)
T ss_dssp CSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEECTT---------CCCHHHHHHSCGGGSCS
T ss_pred CCCCEEEECCEECCHHHHHHHHHHCCCCCEEEEEEEECCCCEE-EEEEEECCHH---------HHHHHHHHHCHHHCCCC
T ss_conf 6789799898971779999999849994089999983799559-9999966757---------89999998690102993
Q ss_pred EEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 79981875799999731342113343322346676543100899999999831039720236898001586659999999
Q 002615 319 RFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVA 398 (900)
Q Consensus 319 ~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~~GgdSl~a~~l~ 398 (900)
.++++++||+|++|||||++|++.+...... ...+.++.++.++++|+++|+.+.++.++|||++|||||+|++|+
T Consensus 487 ~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~----~~~~~~~~e~~l~~iw~~vL~~~~~~~~d~Ff~lGGdSl~a~~l~ 562 (620)
T 4dg8_A 487 ACVRVEALPLTAHGKLDRAALLRRLEEPLER----CASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNSLLALQLV 562 (620)
T ss_dssp EEEECSSCCCC----CCHHHHHHHTCSCC---------------------------------------------------
T ss_pred EEEEECCCCCCCCCCHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 9999795787844597289885104232113----568999899999999999838998899999366467299999999
Q ss_pred HHH-------CCCCHHHHCCCCHHHHHHHHHHHC
Q ss_conf 991-------987102131799899999998512
Q 002615 399 HNL-------GIDMRLIYNFPTPSKLEIALLEKK 425 (900)
Q Consensus 399 ~~l-------~~~~~~~~~~~t~~~l~~~l~~~~ 425 (900)
+++ .+++..+|++||++.|+.+|....
T Consensus 563 ~~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~~ 596 (620)
T 4dg8_A 563 ALCQSAGAGANLGLADLQANSRLDQFSRLLRSHG 596 (620)
T ss_dssp ----------------------------------
T ss_pred HHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCC
T ss_conf 9998638899868999864998999999997368
No 3
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=1.00 E-value=1 Score=487.57 Aligned_cols=385 Identities=21% Similarity=0.280 Sum_probs=329.7
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHH--HHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHH
Q ss_conf 658999884899806740474899--999998919959956914532369999999998380199904789999999875
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQ--EFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQ 80 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~--~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~ 80 (900)
+.++++++|++++.+|++|.+++. ++|.++..|+++++++ ..++..+++.++++++|++.++|+++..++....
T Consensus 218 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 293 (617)
T 3rg2_A 218 EICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA----DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALI 293 (617)
T ss_dssp HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS----SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH
T ss_pred HHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEC----CCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHH
T ss_conf 860889756478814513343466788999997597899838----9987899999998399589816699999998543
Q ss_pred HCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECC-CC
Q ss_conf 04588999995799996368996469999865999559950074211355100003688610003788852032025-89
Q 002615 81 SQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SN 159 (900)
Q Consensus 81 ~~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~ 159 (900)
.......+++||.+++|||++++.+.+.+.+.+ +++++|.||+||++..++..... ......++|+|+ ++
T Consensus 294 ~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~p~~~~ 364 (617)
T 3rg2_A 294 EGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDS--------AEKIIHTQGYPMCPD 364 (617)
T ss_dssp TTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSC--------HHHHHHCCCEESCTT
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-CCCEEEEECCCCCEEECCCCCCC--------CCCCCCCCCCCCCCC
T ss_conf 045644577741899768869999999999871-99178776467642430257874--------001246778667887
Q ss_pred CEEEEECCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEE
Q ss_conf 4899965999---8999668999265315212599987810010247766556767889863575296289806993999
Q 002615 160 CDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 236 (900)
Q Consensus 160 ~~~~i~d~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~ 236 (900)
..++++|+++ +.++.|||+++|+++++||+++++.|.+.|.. ++||+|||++++++||.++|
T Consensus 365 ~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~---------------~~~yrTGDl~~~~~dG~l~~ 429 (617)
T 3rg2_A 365 DEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA---------------NGFYCSGDLISIDPEGYITV 429 (617)
T ss_dssp CEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCT---------------TSCEEEEEEEEECTTSCEEE
T ss_pred CEEEEECCCCCCCCCCCCEEEEECCCCCCCHHCCCHHHHHHCCCC---------------CCCEECCCEEEECCCCEEEE
T ss_conf 649999999999999974179961746030001893332110488---------------98566476689838954999
Q ss_pred ECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCC
Q ss_conf 8105992789956408478999994799900899997614883489999999538888638889999999982-099784
Q 002615 237 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAM 315 (900)
Q Consensus 237 ~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~ 315 (900)
+||+||+||++|+||+|.|||++|.+||.|.+++|+..++...+..++++++...... ..++++++++ .+|.||
T Consensus 430 ~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~~lp~~~ 504 (617)
T 3rg2_A 430 QGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLR-----AVQVRRFLREQGIAEFK 504 (617)
T ss_dssp EEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHTTTCCGGG
T ss_pred EEECCCEEEECCEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEEEECCCCC-----HHHHHHHHHHCCCCCCC
T ss_conf 7464777887989818899999998498702788970468555715799999378789-----99999999857896235
Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCHHHH
Q ss_conf 27779981875799999731342113343322346676543100899999999831039-72023689800158665999
Q 002615 316 IPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALM-VEEVLHHDNFFTMGGNSIAA 394 (900)
Q Consensus 316 ~p~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~i~~~~~Ff~~GgdSl~a 394 (900)
+|..++++++||+|++|||||++|++++........ .+.+..++.++++|.++|+ ...++.+++||++|||||+|
T Consensus 505 vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~~~~d~Ff~lGgdSl~a 580 (617)
T 3rg2_A 505 LPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGR----ASIPASKAALREVILPLLDESDEPFDDDNLIDYGLDSVRM 580 (617)
T ss_dssp SCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHHSS----SCCCCSHHHHHHHHGGGSCTTCCCCTTSCGGGGTCCHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHH
T ss_conf 886799913568898877719999988752455444----6656317899999999846577878998756527408999
Q ss_pred HHHHHHH-----CCCCHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999991-----98710213179989999999851
Q 002615 395 AHVAHNL-----GIDMRLIYNFPTPSKLEIALLEK 424 (900)
Q Consensus 395 ~~l~~~l-----~~~~~~~~~~~t~~~l~~~l~~~ 424 (900)
++|+++| .+++..+|++||++.|+.+|.++
T Consensus 581 ~~l~~~l~~~~~~~~~~~~~~~pti~~la~~l~~~ 615 (617)
T 3rg2_A 581 MALAARWRKVHGDIDFVMLAKNPTIDAWWKLLSRE 615 (617)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHSCCHHHHHHHHCC-
T ss_pred HHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999965998899985087799999987863
No 4
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=1.00 E-value=1 Score=414.70 Aligned_cols=341 Identities=26% Similarity=0.404 Sum_probs=290.0
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 65899988489980674047489999999891995995691453236999999999838019990478999999987504
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~ 82 (900)
..++++++|++++.+|++|+.++..+|.++..|+++++.+ .....++..+++.++++++|++.++|+++..+.+.
T Consensus 216 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---- 290 (563)
T 1amu_A 216 NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL-KDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE---- 290 (563)
T ss_dssp HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECC-HHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT----
T ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEECC-HHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHHHC----
T ss_conf 8549897877999677018999999999997799999848-57605999999999984994999589999998742----
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf 58899999579999636899646999986599955995007421135510000368861000378885203202589489
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
.+++||.+++|||++++++.+.|.+ ...++|.||+||++..++....... .....+++|+|++++++
T Consensus 291 ----~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~TE~~~~~~~~~~~~~------~~~~~~~vG~p~~~~~v 357 (563)
T 1amu_A 291 ----RILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKE------TIGHSVPIGAPIQNTQI 357 (563)
T ss_dssp ----TCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS------CCCSSCCCBEECTTEEE
T ss_pred ----CCCCCCEEEEEEECCCHHHHHHHHH---CCEEEEEECCCHHHHHHEEEECCCC------CCCCCCCCCCEECCCEE
T ss_conf ----2555668999874499999999972---8869998885777485425433555------57888866453579889
Q ss_pred EEECCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEECC
Q ss_conf 9965999---8999668999265315212599987810010247766556767889863575296289806993999810
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~GR 239 (900)
+|+|+++ +.++.|||+++|++++.||+++++.|.+.|...+.. .+++||+|||++++++||.++|+||
T Consensus 358 ~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~---------~g~~w~~TGDlg~~d~dG~l~i~GR 428 (563)
T 1amu_A 358 YIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFV---------PGEKLYKTGDQARWLSDGNIEYLGR 428 (563)
T ss_dssp EEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSS---------TTSEEEEEEEEEEECTTSCEEEEEE
T ss_pred EEECCCCCCCCCCCCEEEEEECHHHCHHHCCCCHHHHHHCCCCCCC---------CCCEEEECCCEEEECCCCEEEEECC
T ss_conf 9999995999899817999811111852279912304415368899---------9988984697799938982999654
Q ss_pred CCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 59927899564084789999947999008999976148834899999995388886388899999999820997842777
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 319 (900)
+||+||++|+||+|.+||++|.+||.|.+++|++.++...++.+++++++.... ..++|+++++++||.|++|..
T Consensus 429 ~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-----~~~~l~~~l~~~L~~y~~P~~ 503 (563)
T 1amu_A 429 IDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-----PLEQLRQFSSEELPTYMIPSY 503 (563)
T ss_dssp GGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-----CHHHHHHHHHHHSCGGGSCSE
T ss_pred CCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCC-----CHHHHHHHHHHHCCHHHCCCE
T ss_conf 568799897985889999999858996669999864699975999999848989-----999999999856904428858
Q ss_pred EEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 9981875799999731342113343322346676543100899999999831039720
Q 002615 320 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEE 377 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 377 (900)
++++++||+|++|||||++|++...... .......+.+++|+.|.++|+++|+.++
T Consensus 504 i~~v~~lP~t~~GKi~r~~L~~~~~~~~--~~~~~~~p~~~~e~~l~~iw~~~L~~~~ 559 (563)
T 1amu_A 504 FIQLDKMPLTSNGKIDRKQLPEPDLTFG--MRVDYEAPRNEIEETLVTIWQDVLGSHH 559 (563)
T ss_dssp EEECSSCCBCTTSSBCGGGSCCCCCCC-------------------------------
T ss_pred EEEECCCCCCCCCCHHHHHCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9881236889986840786278632244--4346679999899999999999865333
No 5
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=1.00 E-value=1 Score=413.02 Aligned_cols=325 Identities=19% Similarity=0.267 Sum_probs=278.3
Q ss_pred CCCCCCCCCEEEECCCCCHHHHH-HHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 65899988489980674047489-99999989199599569145323699999999983801999047899999998750
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 81 (900)
..++++++|++++.+|++|+.++ ..++.+|..|+++++.+......+|..+++.++++++|++.++|++++.+.+....
T Consensus 291 ~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 370 (652)
T 1pg4_A 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK 370 (652)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG
T ss_pred HHCCCCCCCEEEECCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHCCCC
T ss_conf 83089998789991687344200788898897485599989988899989999999985990998579999999844843
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 458899999579999636899646999986599--955995007421135510000368861000378885203202589
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 82 ~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.....++++||.+++|||++++++++++.+.++ +++++|.||+||++..++...... ......++|+|+++
T Consensus 371 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~-------~~~~~~s~G~p~~g 443 (652)
T 1pg4_A 371 AIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA-------IELKAGSATRPFFG 443 (652)
T ss_dssp GTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT-------CCBCTTCCBSBCTT
T ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEECCCCCC-------CCCCCCCCCCCCCC
T ss_conf 22348967358999845889999999999983987874773325765046400379887-------67667865667689
Q ss_pred CEEEEECCCCC---CCCCCEEEECC--CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCE
Q ss_conf 48999659998---99966899926--53152125999878100102477665567678898635752962898069939
Q 002615 160 CDIVLVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 234 (900)
Q Consensus 160 ~~~~i~d~~~~---~~~~Gel~v~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l 234 (900)
++++|+|+++. .++.|||+++| +++++||+++++.+.+.|... .++||+|||++++++||.+
T Consensus 444 ~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~-------------~~g~y~TGDlg~~d~dG~l 510 (652)
T 1pg4_A 444 VQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFST-------------FKNMYFSGDGARRDEDGYY 510 (652)
T ss_dssp CCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSS-------------STTSEEEEEEEEECTTSCE
T ss_pred CEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHHHHHHHC-------------CCCEEECCCEEEECCCCCE
T ss_conf 758999999989679961899991488842644408777777644424-------------9988888957998389968
Q ss_pred EEECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99810599278995640847899999479990089999761488348999999953888863888999999998209978
Q 002615 235 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 314 (900)
Q Consensus 235 ~~~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~ 314 (900)
+|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|||+++.+....+...++|+++++++++.+
T Consensus 511 ~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~ 590 (652)
T 1pg4_A 511 WITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPL 590 (652)
T ss_dssp EEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGG
T ss_pred EEEECCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99965788898799998899999999859883438999778578983899999989999987999999999999767987
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 427779981875799999731342113343322
Q 002615 315 MIPNRFVFMDSLPMTSSGKVDYASLSASTSFTI 347 (900)
Q Consensus 315 ~~p~~~~~v~~lP~t~~GKidr~~L~~~~~~~~ 347 (900)
++|+.++++++||+|++|||+|++|++++...+
T Consensus 591 ~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 591 ATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp GCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 387399990898989974263999999970787
No 6
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=1.00 E-value=1 Score=406.69 Aligned_cols=321 Identities=22% Similarity=0.321 Sum_probs=276.8
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 6589998848998067404748999-999989199599569145323699999999983801999047899999998750
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 81 (900)
..+++.++|++++.+|++|+.++.. ++.++..|+++++.+ ..++..+++.++++++|++.++|+++..+......
T Consensus 263 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 338 (979)
T 3tsy_A 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP----KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET 338 (979)
T ss_dssp CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG
T ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEC----CCCHHHHHHHHHHHCCEEEECHHHHHHHHHHCCCC
T ss_conf 34467999779997856999999999998875384899908----89999999999985972997479999999857655
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCE
Q ss_conf 45889999957999963689964699998659995599500742113551000036886100037888520320258948
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
.. .++++||.+++|||++++++.+.+.+.+|+++++|.||+||++..++....... ........++|+|+++++
T Consensus 339 ~~--~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~p~~~~~ 412 (979)
T 3tsy_A 339 EK--YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK----EPFPVKSGACGTVVRNAE 412 (979)
T ss_dssp GT--SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSS----SCCCCCTTCCCEECSSCE
T ss_pred CC--CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCC----CCCCCCCCCCCCCCCCCE
T ss_conf 57--884202899996787999999999997799848854445453278770778788----766667787673157767
Q ss_pred EEEECCCC----CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEE
Q ss_conf 99965999----89996689992653152125999878100102477665567678898635752962898069939998
Q 002615 162 IVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~~----~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~ 237 (900)
++|+|++. +.++.|||+++|+.++.||+++|+.+.+.|. .++||+|||++++++||.++|+
T Consensus 413 ~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~---------------~~g~~~TGDl~~~~~dG~l~~~ 477 (979)
T 3tsy_A 413 MKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETID---------------KDGWLHTGDIGLIDDDDELFIV 477 (979)
T ss_dssp EEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEEE
T ss_pred EEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCC---------------CCCCEECCCEEEECCCCEEEEE
T ss_conf 9998488888889998627999788703411699356064336---------------8982876888998579659993
Q ss_pred CCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10599278995640847899999479990089999761488348999999953888863888999999998209978427
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 317 (900)
||+||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++++....... ..++|+++++++||.|++|
T Consensus 478 GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~---~~~~l~~~l~~~l~~~~~p 554 (979)
T 3tsy_A 478 DRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL---SEDDVKQFVSKQVVFYKRI 554 (979)
T ss_dssp EESCC---------------------------------------------------------------------------
T ss_pred CCCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCC---CHHHHHHHHHHHCCCCCCC
T ss_conf 5887879999999979999999984998526999974266789379999997799988---9999999999755466687
Q ss_pred CEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 7799818757999997313421133433223466
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTSFTISAQH 351 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~ 351 (900)
..++++++||+|++|||||++|++.+.......+
T Consensus 555 ~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~ 588 (979)
T 3tsy_A 555 NKVFFTESIPKAPSGKILRKDLRAKLANGLGSGM 588 (979)
T ss_dssp ----------------------------------
T ss_pred EEEEEECCCCCCCCCCEEHHHHHHHHHHHCCCCC
T ss_conf 0799969767499978639999999973267765
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=1.00 E-value=1 Score=403.42 Aligned_cols=314 Identities=24% Similarity=0.353 Sum_probs=274.4
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHH-HHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 6589998848998067404748999-999989199599569145323699999999983801999047899999998750
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQE-FLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 81 (900)
..+++.++|++++.+|++|+.++.. ++.++..|+++++.+ ..++..+++.++++++|++.++|+++..++.....
T Consensus 216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 291 (536)
T 3ni2_A 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP----KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDL 291 (536)
T ss_dssp CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS----SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCG
T ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEECC----CCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCC
T ss_conf 44467888779995572888877999999996598799907----99999999999984974897048999999708000
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCE
Q ss_conf 45889999957999963689964699998659995599500742113551000036886100037888520320258948
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 161 (900)
Q Consensus 82 ~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 161 (900)
. ..++++||.+++|||++++++.+.+++.+++++++|.||+||++..++....... ........++|+|+++++
T Consensus 292 ~--~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~ 365 (536)
T 3ni2_A 292 D--KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAK----EPFDIKPGACGTVVRNAE 365 (536)
T ss_dssp G--GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSS----SCCCCCTTCCCEECSSCE
T ss_pred C--CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCC----CCCCCCCCCEEEECCCCE
T ss_conf 3--5887400099987777999999999997799973210065411634324546688----644588997567679838
Q ss_pred EEEECCC-C---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEE
Q ss_conf 9996599-9---89996689992653152125999878100102477665567678898635752962898069939998
Q 002615 162 IVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 237 (900)
Q Consensus 162 ~~i~d~~-~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~ 237 (900)
++++|++ + +.++.|||+++|++++.||+++++.+.+.|. .++||+|||++++++||.++|+
T Consensus 366 ~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~---------------~~g~~~TGDl~~~~~dG~l~~~ 430 (536)
T 3ni2_A 366 MKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID---------------KEGWLHTGDIGYIDDDDELFIV 430 (536)
T ss_dssp EEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEEE
T ss_pred EEEEECCCCCCCCCCCCCEEEEECCCCCHHHCCCHHHHHHHCC---------------CCCCEECCCEEEECCCCEEEEE
T ss_conf 9999389996798999628999683621354489567774336---------------7985471657998189659998
Q ss_pred CCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10599278995640847899999479990089999761488348999999953888863888999999998209978427
Q 002615 238 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 317 (900)
Q Consensus 238 GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 317 (900)
||+||+||++|+||+|.+||++|.+||.|.+++|++.+++..++.++++++......... ++|+++++++||.|++|
T Consensus 431 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~~l~~~~~p 507 (536)
T 3ni2_A 431 DRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATE---DEIKQYISKQVIFYKRI 507 (536)
T ss_dssp EECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHTTSCGGGCC
T ss_pred ECCCCEEEECCEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCH---HHHHHHHHHHCCCCCCC
T ss_conf 503034888999998899999997398710478996225778951589999668998999---99999999755577246
Q ss_pred CEEEECCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 779981875799999731342113343
Q 002615 318 NRFVFMDSLPMTSSGKVDYASLSASTS 344 (900)
Q Consensus 318 ~~~~~v~~lP~t~~GKidr~~L~~~~~ 344 (900)
..++++++||+|++|||||++|++++.
T Consensus 508 ~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 508 KRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp SEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred CEEEEEECCCCCCCCCEEHHHHHHHHC
T ss_conf 679997147889987760999998862
No 8
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=1.00 E-value=1 Score=402.22 Aligned_cols=320 Identities=22% Similarity=0.226 Sum_probs=277.8
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 65899988489980674047489999999891995995691453236999999999838019990478999999987504
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~ 82 (900)
..+++.++|++++.+|++|+.++..++.++..|+++++.+ ..++..+++.++++++|++.++|++++.+.......
T Consensus 214 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~----~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 289 (549)
T 3g7s_A 214 VATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG----MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESS 289 (549)
T ss_dssp HHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES----SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECC----CCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHH
T ss_conf 8709998877999476799988999999986295499737----899999999999857749981888999999605541
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHH----C--CCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 588999995799996368996469999865----9--9955995007421135510000368861000378885203202
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKL----F--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLP 156 (900)
Q Consensus 83 ~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~----~--~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p 156 (900)
....++++||.+++|||++++++.+.+.+. + ++++++|.||+||++..++...... .....++|+|
T Consensus 290 ~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~~G~p 361 (549)
T 3g7s_A 290 NKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR--------LDKSTTQGVP 361 (549)
T ss_dssp CCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG--------GGGTTSCCEE
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHHHCCCCCC--------CCCCCCCCCC
T ss_conf 24477611258886775699999999999877553776531045685162333332688434--------6768874656
Q ss_pred CCCCEEEEEC-CCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCC
Q ss_conf 5894899965-999---899966899926531521259998781001024776655676788986357529628980699
Q 002615 157 ISNCDIVLVE-SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232 (900)
Q Consensus 157 ~~~~~~~i~d-~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg 232 (900)
+++++++++| +++ +.++.|||+++|++++.||+++++.+.+.|...+ ++.+||+|||++++++||
T Consensus 362 ~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~-----------~g~~~~~TGDl~~~~~dG 430 (549)
T 3g7s_A 362 MSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE-----------KGRKFFRTGDVGFIDEEG 430 (549)
T ss_dssp CTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECT-----------TCCEEEEEEEEEEECTTS
T ss_pred CCCCEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHCCCHHHHHHHHHCCC-----------CCCCEECCCCEEEECCCC
T ss_conf 999779998389986899999518999786666565789556366641147-----------898257158689983896
Q ss_pred CEEEECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 39998105992789956408478999994799900899997614883489999999538888638889999999982099
Q 002615 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 312 (900)
Q Consensus 233 ~l~~~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~ 312 (900)
.++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++++... .....++|+++++++||
T Consensus 431 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~-~~~~~~~l~~~l~~~L~ 509 (549)
T 3g7s_A 431 FLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR-GKVDEEDIIEWVRERIS 509 (549)
T ss_dssp CEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT-TSCCHHHHHHHHHTTCC
T ss_pred EEEEECCCCCEEEECCEEECHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEEECCCCC-CCCCHHHHHHHHHHHCC
T ss_conf 39995366426998999988999999998499931688996375666956899999788766-76799999999998645
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 7842777998187579999973134211334332
Q 002615 313 LAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 313 ~~~~p~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
.|++|..++++++||+|++|||||++|++.+...
T Consensus 510 ~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 510 GYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -----CCCCEEEECC-------------------
T ss_pred CCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHCC
T ss_conf 7615408999643798987678599999776314
No 9
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=1.00 E-value=1 Score=402.08 Aligned_cols=319 Identities=25% Similarity=0.371 Sum_probs=275.6
Q ss_pred CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 65899988489980674047489999999891995995691453236999999999838019990478999999987504
Q 002615 3 DLYPLHGEELLLFKTSISFIDHLQEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQSQ 82 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~ 82 (900)
..++++++|++++.+|++|+.+...++.++..|+++++.+.. ..+|..+++.++++++|++.++|++++.+.+....
T Consensus 247 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~- 323 (570)
T 4gr5_A 247 DYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE- 323 (570)
T ss_dssp CSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-
T ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCC--CCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHCHH-
T ss_conf 422889777899946863888999999999669899976876--68999999999983996998019999999851443-
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCEE
Q ss_conf 58899999579999636899646999986599955995007421135510000368861000378885203202589489
Q 002615 83 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 162 (900)
Q Consensus 83 ~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 162 (900)
.+++||.+++|||++++.+.+.+.+.+++++++|.||+||++.+++....... .......++|+|++++++
T Consensus 324 ----~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~-----~~~~~~~~iG~p~~~~~v 394 (570)
T 4gr5_A 324 ----AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAG-----DLSGTALPIGVPLAGKRA 394 (570)
T ss_dssp ----GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGG-----GTTSSSCCCBEECTTEEE
T ss_pred ----HCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECHHHHEEEEEEEEECCC-----CCCCCCCCCCEEECCCEE
T ss_conf ----27774199990260999999999975899689974660143611456540266-----667885645400189889
Q ss_pred EEECCCC---CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEECC
Q ss_conf 9965999---8999668999265315212599987810010247766556767889863575296289806993999810
Q 002615 163 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 239 (900)
Q Consensus 163 ~i~d~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~~~GR 239 (900)
+|+|+++ +.++.|||+++|+.++.||+++++.+.+.|...+.. ..++++||+|||++++++||.++|+||
T Consensus 395 ~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~-------~~~~~~w~~TGDlg~~d~dG~l~~~GR 467 (570)
T 4gr5_A 395 YVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFA-------GPGGERMYRTGDLARRRADGVLEYVGR 467 (570)
T ss_dssp EEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTC-------CSSCCEEEEEEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCCCCCCCCEEEEEEECCCCHHCCCCCHHHHCCCCCCCCC-------CCCCCEEEECCCEEEECCCCEEEEECC
T ss_conf 9999998999899837999955430502089842530506268888-------999977982798589879975999724
Q ss_pred CCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 59927899564084789999947999008999976148834899999995388886388899999999820997842777
Q 002615 240 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 319 (900)
Q Consensus 240 ~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 319 (900)
+||+||++|+||+|.|||++|.+||.|.+|+|++.++...++.++++++.+.... ....++|+++++++||.|++|..
T Consensus 468 ~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~ 545 (570)
T 4gr5_A 468 ADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVE 545 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEECCEEECHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCC--CCCHHHHHHHHHHHCCCCCCCCE
T ss_conf 4897998829708899999996199855599998607999759999999457788--85899999999855961149848
Q ss_pred EEECCCCCCCCCCCCCHHHHCCC
Q ss_conf 99818757999997313421133
Q 002615 320 FVFMDSLPMTSSGKVDYASLSAS 342 (900)
Q Consensus 320 ~~~v~~lP~t~~GKidr~~L~~~ 342 (900)
++++++||+|++|||||++|++.
T Consensus 546 i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 546 CVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------
T ss_pred EEECCCCCCCCCCCCCHHHHHCC
T ss_conf 99836678899847456750156
No 10
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=1.00 E-value=1 Score=400.58 Aligned_cols=325 Identities=21% Similarity=0.282 Sum_probs=274.0
Q ss_pred CCCCCCCCCEEEECCCCCHHHHH-HHHHHHHHHCCEEEECCCHHHHHCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 65899988489980674047489-99999989199599569145323699999999983801999047899999998750
Q 002615 3 DLYPLHGEELLLFKTSISFIDHL-QEFLSAILTACTLVVPPIIELKKNLISIIHFLQAYSISRLTTVPSLMRVVLPALQS 81 (900)
Q Consensus 3 ~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~ 81 (900)
..++++++|++++.+|++|+.+. ..++.+|..|+++++.+......+|..+++.++++++|++.++|++++.+.+....
T Consensus 297 ~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~ 376 (663)
T 1ry2_A 297 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS 376 (663)
T ss_dssp HHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT
T ss_pred HHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC
T ss_conf 73189988689985784775522899999997287899989988989989999999980998998159999999853954
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 458899999579999636899646999986599--955995007421135510000368861000378885203202589
Q 002615 82 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 159 (900)
Q Consensus 82 ~~~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 159 (900)
.....++++||.+++|||++++++++++.+.++ +++++|.||+||++..++...... .....+.++|+|+++
T Consensus 377 ~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~gs~G~p~~g 450 (663)
T 1ry2_A 377 YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG------VTPMKPGSASFPFFG 450 (663)
T ss_dssp SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT------CCCCCTTCCCEECTT
T ss_pred CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCCCCC------CCCCCCCCCCCCCCC
T ss_conf 23347867467999875889999999999973988855997377730158453168878------756678856657689
Q ss_pred CEEEEECC-CCC---C-CCCCEEEECC--CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCEEEECCCC
Q ss_conf 48999659-998---9-9966899926--531521259998781001024776655676788986357529628980699
Q 002615 160 CDIVLVES-DTV---K-PDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 232 (900)
Q Consensus 160 ~~~~i~d~-~~~---~-~~~Gel~v~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~dg 232 (900)
+.++|+|+ ++. . ++.|||+++| |++++||+++++.+.+.|... .++||+|||++++++||
T Consensus 451 ~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~-------------~~g~y~TGDlg~~d~dG 517 (663)
T 1ry2_A 451 IDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP-------------YPGYYFTGDGAAKDKDG 517 (663)
T ss_dssp CCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS-------------STTSEEEEEEEEECTTC
T ss_pred CEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHCCCCCCHHHHHHHHHCC-------------CCCEEECCCEEEECCCC
T ss_conf 76999859999768888861079992688710052006858889865027-------------99878859779984899
Q ss_pred CEEEECCCCCCEEECCEEECHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCC---C-HH---HHHHHHHH
Q ss_conf 39998105992789956408478999994799900899997614883489999999538888---6-38---88999999
Q 002615 233 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT---S-SE---IFLSSIKS 305 (900)
Q Consensus 233 ~l~~~GR~d~~ik~~G~ri~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~l~a~v~~~~~~~---~-~~---~~~~~l~~ 305 (900)
.++|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++||+++++.. . .+ .+.++|++
T Consensus 518 ~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~ 597 (663)
T 1ry2_A 518 YIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVF 597 (663)
T ss_dssp CEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHH
T ss_pred CEEEEEECCCEEEECCEECCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 78998554898988999827999999998589824189997765788817999999757876555564368999999999
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 99820997842777998187579999973134211334332
Q 002615 306 WVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 346 (900)
Q Consensus 306 ~l~~~l~~~~~p~~~~~v~~lP~t~~GKidr~~L~~~~~~~ 346 (900)
+++++++.+++|+.++++++||+|++|||+|++|++++...
T Consensus 598 ~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 598 TVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp HHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 99976797747708999388887876174599999997388
Done!