Query 002620
Match_columns 899
No_of_seqs 754 out of 3632
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 4.5E-77 9.7E-82 680.0 31.1 383 482-869 30-416 (656)
2 PLN02318 phosphoribulokinase/u 100.0 3.3E-58 7.3E-63 525.4 29.2 363 28-396 31-410 (656)
3 COG0572 Udk Uridine kinase [Nu 100.0 5.9E-34 1.3E-38 293.0 13.7 174 515-690 6-191 (218)
4 COG1437 CyaB Adenylate cyclase 100.0 6.7E-31 1.5E-35 259.8 14.6 142 247-397 21-177 (178)
5 PTZ00301 uridine kinase; Provi 100.0 7.6E-30 1.6E-34 266.1 14.7 173 517-691 3-191 (210)
6 KOG2878 Predicted kinase [Gene 100.0 1.1E-30 2.4E-35 259.1 6.7 222 515-763 29-279 (282)
7 PF00485 PRK: Phosphoribulokin 100.0 3E-29 6.5E-34 259.4 11.7 170 519-691 1-190 (194)
8 PRK05439 pantothenate kinase; 99.9 1.4E-27 3.1E-32 261.0 14.5 239 455-694 12-303 (311)
9 PLN03046 D-glycerate 3-kinase; 99.9 1E-27 2.3E-32 266.0 9.4 230 502-762 192-456 (460)
10 PLN02796 D-glycerate 3-kinase 99.9 1.4E-27 3.1E-32 262.2 10.4 217 515-762 98-344 (347)
11 PLN02348 phosphoribulokinase 99.9 1.2E-26 2.6E-31 258.0 17.5 183 509-695 41-249 (395)
12 COG0572 Udk Uridine kinase [Nu 99.9 1.2E-26 2.6E-31 239.1 14.4 167 60-227 6-191 (218)
13 PRK05439 pantothenate kinase; 99.9 1.5E-26 3.3E-31 252.9 15.7 219 9-227 9-299 (311)
14 cd02029 PRK_like Phosphoribulo 99.9 8.5E-27 1.8E-31 247.0 12.5 167 519-689 1-202 (277)
15 TIGR00318 cyaB adenylyl cyclas 99.9 3.8E-26 8.2E-31 232.1 15.6 138 249-395 23-173 (174)
16 TIGR00554 panK_bact pantothena 99.9 4.1E-26 9E-31 248.0 13.0 180 514-694 59-283 (290)
17 cd02028 UMPK_like Uridine mono 99.9 9.6E-26 2.1E-30 230.4 12.4 168 519-687 1-178 (179)
18 cd02025 PanK Pantothenate kina 99.9 2.3E-25 5E-30 234.7 11.8 173 519-692 1-213 (220)
19 PRK15453 phosphoribulokinase; 99.9 9.8E-25 2.1E-29 233.1 14.0 173 515-688 3-207 (290)
20 COG4240 Predicted kinase [Gene 99.9 1.3E-25 2.7E-30 227.6 5.6 200 513-738 46-270 (300)
21 PRK05480 uridine/cytidine kina 99.9 3.5E-24 7.7E-29 223.9 14.9 174 515-690 4-189 (209)
22 PTZ00301 uridine kinase; Provi 99.9 3.3E-24 7.2E-29 223.8 14.4 166 62-228 3-191 (210)
23 PF00485 PRK: Phosphoribulokin 99.9 1.4E-23 3.1E-28 217.0 12.9 162 64-226 1-188 (194)
24 COG1437 CyaB Adenylate cyclase 99.9 2.3E-23 5E-28 206.3 13.5 130 731-865 34-177 (178)
25 TIGR00554 panK_bact pantothena 99.9 1E-22 2.2E-27 221.6 17.5 199 28-226 9-278 (290)
26 TIGR00235 udk uridine kinase. 99.9 1.8E-22 3.9E-27 210.9 15.2 175 514-690 3-189 (207)
27 cd02023 UMPK Uridine monophosp 99.9 2.3E-22 4.9E-27 208.5 14.1 172 519-692 1-184 (198)
28 PRK07429 phosphoribulokinase; 99.9 2.8E-22 6.1E-27 222.2 14.2 175 513-690 4-187 (327)
29 PLN02348 phosphoribulokinase 99.9 8.3E-22 1.8E-26 219.6 15.5 178 47-226 34-244 (395)
30 PRK06696 uridine kinase; Valid 99.9 1.8E-21 4E-26 205.7 16.0 179 513-692 18-213 (223)
31 COG1072 CoaA Panthothenate kin 99.9 1.1E-21 2.4E-26 206.7 12.5 187 8-194 4-236 (283)
32 cd02026 PRK Phosphoribulokinas 99.9 1.2E-21 2.7E-26 212.6 12.8 168 519-689 1-177 (273)
33 cd07890 CYTH-like_AC_IV-like A 99.9 2.6E-21 5.6E-26 195.9 14.0 135 250-393 22-169 (169)
34 cd02024 NRK1 Nicotinamide ribo 99.9 2.1E-21 4.6E-26 198.8 11.9 156 519-674 1-179 (187)
35 cd02029 PRK_like Phosphoribulo 99.8 5.6E-21 1.2E-25 202.9 13.9 162 64-226 1-202 (277)
36 TIGR00318 cyaB adenylyl cyclas 99.8 9.4E-21 2E-25 192.6 14.3 132 727-863 30-173 (174)
37 cd02028 UMPK_like Uridine mono 99.8 6.1E-21 1.3E-25 195.0 12.0 161 64-224 1-178 (179)
38 cd02025 PanK Pantothenate kina 99.8 1.1E-20 2.5E-25 199.1 13.7 164 64-227 1-211 (220)
39 PRK05480 uridine/cytidine kina 99.8 2E-20 4.4E-25 195.6 15.3 167 60-227 4-189 (209)
40 COG1072 CoaA Panthothenate kin 99.8 2E-20 4.3E-25 197.2 12.1 194 455-656 8-238 (283)
41 PRK07667 uridine kinase; Provi 99.8 4.4E-20 9.6E-25 190.9 13.9 172 508-687 8-193 (193)
42 PRK06696 uridine kinase; Valid 99.8 1.4E-19 3.1E-24 191.3 17.2 169 58-226 18-210 (223)
43 PRK15453 phosphoribulokinase; 99.8 2E-19 4.3E-24 192.6 15.3 166 60-225 3-207 (290)
44 cd02023 UMPK Uridine monophosp 99.8 2.1E-19 4.6E-24 186.3 14.3 164 64-228 1-183 (198)
45 PRK09270 nucleoside triphospha 99.8 5.1E-19 1.1E-23 187.9 16.1 182 507-691 23-223 (229)
46 PRK07429 phosphoribulokinase; 99.8 3.6E-19 7.9E-24 197.4 14.1 167 58-226 4-186 (327)
47 PRK07667 uridine kinase; Provi 99.8 6E-19 1.3E-23 182.5 13.8 165 56-224 11-193 (193)
48 TIGR00235 udk uridine kinase. 99.8 8.1E-19 1.8E-23 183.4 14.7 168 59-227 3-189 (207)
49 PRK09270 nucleoside triphospha 99.8 7.1E-18 1.5E-22 179.1 17.4 182 44-226 15-221 (229)
50 cd02026 PRK Phosphoribulokinas 99.8 2.1E-18 4.5E-23 187.4 12.8 161 64-226 1-177 (273)
51 PF01121 CoaE: Dephospho-CoA k 99.8 9.7E-19 2.1E-23 178.5 8.7 154 63-226 1-175 (180)
52 cd02024 NRK1 Nicotinamide ribo 99.8 2.7E-18 5.8E-23 176.0 11.2 148 64-211 1-179 (187)
53 PRK06547 hypothetical protein; 99.7 1.7E-17 3.7E-22 168.4 15.7 153 514-687 12-171 (172)
54 PRK06547 hypothetical protein; 99.7 2.1E-17 4.6E-22 167.7 15.7 153 59-224 12-171 (172)
55 KOG4203 Armadillo/beta-Catenin 99.7 4.6E-18 1E-22 196.1 7.5 176 514-690 41-237 (473)
56 PRK14733 coaE dephospho-CoA ki 99.7 2.1E-17 4.6E-22 171.5 11.2 158 60-227 4-182 (204)
57 PTZ00451 dephospho-CoA kinase; 99.7 2.3E-17 4.9E-22 175.8 10.6 160 62-226 1-189 (244)
58 cd02022 DPCK Dephospho-coenzym 99.7 2E-17 4.2E-22 169.2 9.7 154 64-227 1-175 (179)
59 PRK14730 coaE dephospho-CoA ki 99.7 2.7E-17 5.8E-22 170.4 10.2 156 63-227 2-179 (195)
60 KOG3220 Similar to bacterial d 99.7 2.2E-17 4.8E-22 165.8 9.0 159 62-228 1-180 (225)
61 PRK00081 coaE dephospho-CoA ki 99.7 5.7E-17 1.2E-21 167.9 9.6 156 62-227 2-178 (194)
62 PLN02422 dephospho-CoA kinase 99.7 1.2E-16 2.6E-21 168.7 9.4 158 62-227 1-179 (232)
63 PRK14734 coaE dephospho-CoA ki 99.7 2.8E-16 6.1E-21 163.5 10.6 159 62-228 1-180 (200)
64 PRK14732 coaE dephospho-CoA ki 99.6 3.7E-16 8E-21 162.0 8.5 154 64-227 1-175 (196)
65 cd07890 CYTH-like_AC_IV-like A 99.6 1.6E-15 3.6E-20 153.6 12.7 130 727-861 28-169 (169)
66 COG0237 CoaE Dephospho-CoA kin 99.6 4E-16 8.8E-21 161.6 7.4 156 62-228 2-178 (201)
67 PRK14731 coaE dephospho-CoA ki 99.6 1.5E-15 3.2E-20 159.1 11.0 160 60-227 3-187 (208)
68 PRK03333 coaE dephospho-CoA ki 99.6 1.8E-15 4E-20 172.7 11.7 157 62-228 1-178 (395)
69 TIGR00152 dephospho-CoA kinase 99.6 7.3E-15 1.6E-19 151.3 9.4 156 64-227 1-177 (188)
70 cd07762 CYTH-like_Pase_1 Uncha 99.5 3.4E-14 7.4E-19 145.3 11.8 119 255-385 25-171 (180)
71 PF01928 CYTH: CYTH domain; I 99.5 2.4E-14 5.2E-19 146.7 10.7 139 249-394 25-183 (185)
72 cd07758 ThTPase Thiamine Triph 99.5 6.1E-14 1.3E-18 145.3 12.1 123 252-385 25-181 (196)
73 PRK08233 hypothetical protein; 99.5 1.2E-13 2.6E-18 140.5 12.7 150 516-689 2-161 (182)
74 PRK08233 hypothetical protein; 99.5 4.3E-13 9.3E-18 136.5 14.0 142 62-226 3-161 (182)
75 KOG3308 Uncharacterized protei 99.5 7.9E-14 1.7E-18 140.4 7.5 158 516-678 3-174 (225)
76 KOG2702 Predicted panthothenat 99.5 1.9E-13 4.1E-18 139.6 9.4 162 36-202 98-294 (323)
77 KOG3308 Uncharacterized protei 99.4 3.2E-13 6.8E-18 136.1 8.7 171 61-236 3-197 (225)
78 cd02022 DPCK Dephospho-coenzym 99.4 1.2E-13 2.6E-18 141.2 4.4 159 519-691 1-176 (179)
79 PLN03046 D-glycerate 3-kinase; 99.4 2E-12 4.3E-17 144.9 13.3 169 44-212 185-429 (460)
80 COG1102 Cmk Cytidylate kinase 99.4 1.6E-12 3.5E-17 127.1 8.5 150 64-229 2-158 (179)
81 PF01121 CoaE: Dephospho-CoA k 99.4 5E-13 1.1E-17 136.6 4.9 159 518-690 1-176 (180)
82 PRK14730 coaE dephospho-CoA ki 99.3 1.7E-12 3.8E-17 134.6 7.3 160 518-691 2-180 (195)
83 PLN02796 D-glycerate 3-kinase 99.3 1.2E-11 2.5E-16 137.1 13.9 165 48-212 81-317 (347)
84 PRK14733 coaE dephospho-CoA ki 99.3 1.2E-12 2.6E-17 136.2 5.8 162 514-690 3-182 (204)
85 KOG2702 Predicted panthothenat 99.3 4.3E-12 9.3E-17 129.8 9.2 139 514-653 116-283 (323)
86 PRK00081 coaE dephospho-CoA ki 99.3 2.2E-12 4.8E-17 133.7 5.1 160 517-691 2-179 (194)
87 KOG4203 Armadillo/beta-Catenin 99.3 4.9E-12 1.1E-16 146.5 8.5 167 60-226 42-236 (473)
88 PRK14734 coaE dephospho-CoA ki 99.3 1.1E-11 2.3E-16 129.2 8.1 161 518-691 2-180 (200)
89 PRK14732 coaE dephospho-CoA ki 99.2 6.2E-12 1.4E-16 130.5 4.2 158 519-691 1-176 (196)
90 PLN02422 dephospho-CoA kinase 99.2 1.8E-11 4E-16 129.5 7.5 161 518-691 2-180 (232)
91 PTZ00451 dephospho-CoA kinase; 99.2 1.6E-11 3.6E-16 131.0 5.5 166 518-692 2-194 (244)
92 PRK01184 hypothetical protein; 99.2 1.1E-10 2.4E-15 119.5 11.2 156 62-227 1-163 (184)
93 cd02020 CMPK Cytidine monophos 99.1 1.2E-10 2.6E-15 114.0 9.3 139 64-225 1-146 (147)
94 COG0283 Cmk Cytidylate kinase 99.1 3.1E-10 6.6E-15 116.8 12.2 167 62-229 4-205 (222)
95 PRK14731 coaE dephospho-CoA ki 99.1 3.7E-11 8.1E-16 125.9 5.5 164 515-691 3-188 (208)
96 PF01928 CYTH: CYTH domain; I 99.1 3E-10 6.6E-15 116.4 11.5 127 728-862 33-183 (185)
97 TIGR00152 dephospho-CoA kinase 99.1 1.2E-10 2.7E-15 119.9 6.9 160 519-691 1-178 (188)
98 TIGR02173 cyt_kin_arch cytidyl 99.1 6.5E-10 1.4E-14 111.9 11.0 150 64-228 2-158 (171)
99 PRK06217 hypothetical protein; 99.1 7.8E-10 1.7E-14 113.5 11.8 104 62-192 1-107 (183)
100 COG4240 Predicted kinase [Gene 99.1 4.5E-10 9.7E-15 115.3 9.3 115 48-162 36-175 (300)
101 PRK04182 cytidylate kinase; Pr 99.1 3.8E-10 8.3E-15 114.5 8.9 151 64-229 2-159 (180)
102 COG0237 CoaE Dephospho-CoA kin 99.1 1.5E-10 3.4E-15 120.1 6.0 160 517-692 2-179 (201)
103 PF13207 AAA_17: AAA domain; P 99.0 2.6E-10 5.7E-15 108.3 6.5 115 519-657 1-118 (121)
104 PRK13477 bifunctional pantoate 99.0 7.6E-10 1.7E-14 129.3 11.4 168 61-229 283-489 (512)
105 TIGR00017 cmk cytidylate kinas 99.0 8.6E-10 1.9E-14 116.3 9.5 161 63-229 3-205 (217)
106 cd07762 CYTH-like_Pase_1 Uncha 99.0 1.7E-09 3.6E-14 110.9 10.8 117 730-854 29-172 (180)
107 KOG3220 Similar to bacterial d 99.0 2.2E-10 4.7E-15 115.9 4.2 167 517-695 1-184 (225)
108 PRK06217 hypothetical protein; 99.0 1.6E-09 3.5E-14 111.1 9.4 106 518-653 2-108 (183)
109 PRK00023 cmk cytidylate kinase 99.0 2.9E-09 6.3E-14 113.0 11.0 163 62-229 4-207 (225)
110 PF13207 AAA_17: AAA domain; P 99.0 1.5E-09 3.2E-14 103.1 7.7 104 64-190 1-111 (121)
111 PRK03333 coaE dephospho-CoA ki 99.0 5.4E-10 1.2E-14 128.0 5.5 159 518-691 2-178 (395)
112 cd02020 CMPK Cytidine monophos 99.0 2.5E-09 5.5E-14 104.7 9.4 142 519-688 1-146 (147)
113 PRK08118 topology modulation p 98.9 2.7E-09 5.8E-14 108.1 9.8 100 62-191 1-101 (167)
114 PRK06762 hypothetical protein; 98.9 9.6E-09 2.1E-13 103.4 13.7 136 62-228 2-149 (166)
115 COG1102 Cmk Cytidylate kinase 98.9 8.3E-10 1.8E-14 108.4 5.6 151 518-689 1-155 (179)
116 PRK13477 bifunctional pantoate 98.9 1.7E-09 3.6E-14 126.5 7.0 132 516-650 283-442 (512)
117 PRK07261 topology modulation p 98.9 9.7E-09 2.1E-13 104.4 11.0 99 64-192 2-102 (171)
118 cd07891 CYTH-like_CthTTM-like_ 98.9 1.1E-08 2.3E-13 101.6 10.1 83 274-370 33-120 (148)
119 PRK11860 bifunctional 3-phosph 98.9 9.1E-09 2E-13 125.5 11.4 181 44-229 423-641 (661)
120 cd07756 CYTH-like_Pase_CHAD Un 98.8 1.2E-08 2.7E-13 105.9 9.8 126 256-388 32-190 (197)
121 PRK08118 topology modulation p 98.8 8.8E-09 1.9E-13 104.3 8.4 103 519-656 3-106 (167)
122 PRK08356 hypothetical protein; 98.8 1.9E-08 4E-13 104.4 10.8 151 62-226 5-176 (195)
123 PRK07261 topology modulation p 98.8 1.1E-08 2.5E-13 103.9 9.0 105 519-658 2-108 (171)
124 cd07758 ThTPase Thiamine Triph 98.8 1.9E-08 4.2E-13 104.4 10.2 119 728-853 30-181 (196)
125 PRK13949 shikimate kinase; Pro 98.8 2.3E-08 4.9E-13 101.6 10.0 143 63-228 2-156 (169)
126 PRK09518 bifunctional cytidyla 98.8 4.9E-08 1.1E-12 120.2 14.2 163 62-229 1-217 (712)
127 TIGR02173 cyt_kin_arch cytidyl 98.8 1.8E-08 3.8E-13 101.5 8.5 114 518-651 1-114 (171)
128 PLN02200 adenylate kinase fami 98.8 3.3E-08 7.2E-13 105.5 10.4 121 60-191 41-168 (234)
129 PRK00131 aroK shikimate kinase 98.7 2.2E-08 4.7E-13 100.9 7.8 40 60-99 2-41 (175)
130 PRK05541 adenylylsulfate kinas 98.7 2.5E-08 5.4E-13 101.5 8.0 137 60-227 5-155 (176)
131 cd07374 CYTH-like_Pase CYTH-li 98.7 4.1E-08 8.9E-13 99.9 9.0 101 254-368 29-157 (174)
132 PRK01184 hypothetical protein; 98.7 3.1E-08 6.8E-13 101.5 7.6 156 518-690 2-163 (184)
133 PRK04182 cytidylate kinase; Pr 98.7 5.6E-08 1.2E-12 98.6 8.7 113 518-650 1-113 (180)
134 PRK00625 shikimate kinase; Pro 98.7 9E-08 1.9E-12 97.5 9.8 141 64-226 2-150 (173)
135 cd07761 CYTH-like_CthTTM-like 98.6 1.2E-07 2.5E-12 94.0 9.8 80 275-369 32-117 (146)
136 PRK00023 cmk cytidylate kinase 98.6 3.2E-08 6.9E-13 105.1 6.1 132 517-650 4-161 (225)
137 PRK03839 putative kinase; Prov 98.6 1.8E-07 4E-12 95.5 10.8 97 64-190 2-101 (180)
138 TIGR01359 UMP_CMP_kin_fam UMP- 98.6 2.3E-07 5E-12 94.8 11.4 117 64-191 1-126 (183)
139 KOG2878 Predicted kinase [Gene 98.6 1.6E-07 3.4E-12 95.0 9.5 102 61-162 30-164 (282)
140 PRK04040 adenylate kinase; Pro 98.6 2.3E-07 4.9E-12 95.9 10.9 151 62-226 2-172 (188)
141 PRK05057 aroK shikimate kinase 98.6 3.8E-07 8.3E-12 92.8 12.0 140 62-229 4-157 (172)
142 cd00464 SK Shikimate kinase (S 98.6 1.3E-07 2.8E-12 93.5 8.3 137 65-226 2-148 (154)
143 PRK06762 hypothetical protein; 98.6 2.4E-07 5.1E-12 93.3 9.5 106 517-651 2-118 (166)
144 PRK14737 gmk guanylate kinase; 98.6 4.1E-07 8.9E-12 93.8 11.1 158 60-226 2-169 (186)
145 TIGR01360 aden_kin_iso1 adenyl 98.5 5.5E-07 1.2E-11 92.0 11.5 119 62-191 3-129 (188)
146 cd01428 ADK Adenylate kinase ( 98.5 4.4E-07 9.6E-12 93.3 10.0 117 65-191 2-127 (194)
147 PRK14528 adenylate kinase; Pro 98.5 7.2E-07 1.6E-11 92.0 11.5 119 62-191 1-130 (186)
148 COG3954 PrkB Phosphoribulokina 98.5 4.7E-07 1E-11 90.9 9.6 168 517-686 5-205 (289)
149 PRK13946 shikimate kinase; Pro 98.5 3E-07 6.5E-12 94.5 8.7 144 62-227 10-160 (184)
150 TIGR00017 cmk cytidylate kinas 98.5 1.4E-07 3.1E-12 99.5 5.8 127 517-652 2-161 (217)
151 PRK14527 adenylate kinase; Pro 98.5 7E-07 1.5E-11 92.3 10.8 140 61-212 5-157 (191)
152 PRK12269 bifunctional cytidyla 98.5 4.4E-07 9.6E-12 112.3 10.8 165 63-229 35-271 (863)
153 cd02021 GntK Gluconate kinase 98.5 1.4E-06 3E-11 86.1 12.2 108 64-191 1-120 (150)
154 PRK03731 aroL shikimate kinase 98.5 4.8E-07 1E-11 91.5 8.9 135 63-226 3-154 (171)
155 PRK08154 anaerobic benzoate ca 98.5 1.1E-06 2.4E-11 97.8 12.2 144 59-228 130-286 (309)
156 PRK13947 shikimate kinase; Pro 98.4 7.5E-07 1.6E-11 90.0 9.7 38 63-100 2-39 (171)
157 PRK04040 adenylate kinase; Pro 98.4 5.7E-07 1.2E-11 92.9 8.9 38 517-554 2-41 (188)
158 PF13671 AAA_33: AAA domain; P 98.4 2.1E-07 4.6E-12 90.8 5.1 114 64-194 1-123 (143)
159 PRK10078 ribose 1,5-bisphospho 98.4 8.3E-07 1.8E-11 91.4 9.5 121 63-190 3-132 (186)
160 PRK00131 aroK shikimate kinase 98.4 3.8E-07 8.2E-12 91.9 6.8 38 516-553 3-40 (175)
161 COG0703 AroK Shikimate kinase 98.4 1.1E-06 2.4E-11 88.6 9.7 134 63-229 3-155 (172)
162 PRK03839 putative kinase; Prov 98.4 8.8E-07 1.9E-11 90.5 9.3 100 519-650 2-101 (180)
163 PRK08356 hypothetical protein; 98.4 9.9E-07 2.1E-11 91.5 9.7 123 516-651 4-137 (195)
164 PRK02496 adk adenylate kinase; 98.4 6E-07 1.3E-11 92.0 7.9 137 62-210 1-147 (184)
165 COG1936 Predicted nucleotide k 98.4 1.3E-06 2.8E-11 87.3 9.7 97 64-190 2-104 (180)
166 PRK14531 adenylate kinase; Pro 98.4 2E-06 4.3E-11 88.4 11.4 117 63-191 3-130 (183)
167 PRK14530 adenylate kinase; Pro 98.4 1.5E-06 3.3E-11 91.5 10.9 116 64-190 5-127 (215)
168 PRK13948 shikimate kinase; Pro 98.4 2.1E-06 4.5E-11 88.3 11.0 40 60-99 8-47 (182)
169 PRK14532 adenylate kinase; Pro 98.4 2.7E-06 5.8E-11 87.5 11.7 115 65-190 3-128 (188)
170 PF13238 AAA_18: AAA domain; P 98.4 2.3E-07 4.9E-12 88.4 3.5 110 65-194 1-117 (129)
171 COG0283 Cmk Cytidylate kinase 98.4 5E-07 1.1E-11 93.4 6.1 134 517-652 4-161 (222)
172 cd02019 NK Nucleoside/nucleoti 98.4 7.9E-07 1.7E-11 76.6 6.3 56 64-177 1-63 (69)
173 PF01583 APS_kinase: Adenylyls 98.4 2.1E-06 4.6E-11 85.7 10.1 104 61-185 1-116 (156)
174 TIGR01351 adk adenylate kinase 98.3 2.6E-06 5.6E-11 89.5 10.9 116 65-190 2-125 (210)
175 PLN02200 adenylate kinase fami 98.3 8E-07 1.7E-11 95.0 7.1 121 515-651 41-168 (234)
176 TIGR02322 phosphon_PhnN phosph 98.3 5.1E-06 1.1E-10 84.7 12.0 121 64-190 3-132 (179)
177 TIGR01359 UMP_CMP_kin_fam UMP- 98.3 1.7E-06 3.7E-11 88.4 8.5 117 519-651 1-126 (183)
178 PLN02199 shikimate kinase 98.3 4.4E-06 9.6E-11 91.1 11.9 58 40-100 83-140 (303)
179 PRK00091 miaA tRNA delta(2)-is 98.3 1.6E-07 3.4E-12 104.0 0.3 43 61-103 3-47 (307)
180 COG0324 MiaA tRNA delta(2)-iso 98.3 1.1E-07 2.4E-12 104.1 -0.9 173 61-256 2-181 (308)
181 PRK00279 adk adenylate kinase; 98.3 2.5E-06 5.4E-11 89.9 9.3 116 64-190 2-128 (215)
182 PRK05541 adenylylsulfate kinas 98.3 1.9E-06 4.2E-11 87.6 8.1 40 514-553 4-48 (176)
183 PRK14729 miaA tRNA delta(2)-is 98.3 1.7E-07 3.8E-12 102.9 0.2 172 62-254 4-179 (300)
184 PF13238 AAA_18: AAA domain; P 98.3 7.3E-07 1.6E-11 84.9 4.0 111 520-653 1-116 (129)
185 PTZ00088 adenylate kinase 1; P 98.3 4.9E-06 1.1E-10 88.6 10.7 121 61-190 5-131 (229)
186 PHA02530 pseT polynucleotide k 98.2 4.9E-06 1.1E-10 91.9 10.6 128 62-212 2-144 (300)
187 PRK03846 adenylylsulfate kinas 98.2 9.4E-06 2E-10 84.4 12.1 41 59-99 21-66 (198)
188 PLN02840 tRNA dimethylallyltra 98.2 2.2E-07 4.8E-12 106.0 -0.2 178 59-254 18-201 (421)
189 PRK00625 shikimate kinase; Pro 98.2 3.3E-06 7.2E-11 86.1 8.2 137 519-689 2-150 (173)
190 cd00227 CPT Chloramphenicol (C 98.2 9.5E-06 2E-10 82.7 11.6 37 63-99 3-41 (175)
191 cd02019 NK Nucleoside/nucleoti 98.2 1.7E-06 3.7E-11 74.5 5.1 26 612-637 34-63 (69)
192 TIGR03263 guanyl_kin guanylate 98.2 5.5E-06 1.2E-10 84.4 9.8 156 63-226 2-165 (180)
193 TIGR01313 therm_gnt_kin carboh 98.2 1.1E-05 2.5E-10 80.8 11.4 34 65-98 1-34 (163)
194 PRK13808 adenylate kinase; Pro 98.2 4.6E-06 9.9E-11 92.9 9.3 115 65-189 3-127 (333)
195 PRK09518 bifunctional cytidyla 98.2 3.1E-06 6.7E-11 104.5 8.5 134 518-652 2-178 (712)
196 PLN02165 adenylate isopentenyl 98.2 3.1E-06 6.7E-11 94.0 7.5 128 60-189 41-195 (334)
197 PRK13949 shikimate kinase; Pro 98.2 5E-06 1.1E-10 84.5 8.0 35 519-553 3-37 (169)
198 PRK12338 hypothetical protein; 98.2 6.5E-06 1.4E-10 91.1 9.4 38 61-98 3-40 (319)
199 TIGR00455 apsK adenylylsulfate 98.2 2.1E-05 4.6E-10 80.7 12.6 106 59-185 15-132 (184)
200 PRK14527 adenylate kinase; Pro 98.1 6.1E-06 1.3E-10 85.3 8.4 120 515-651 4-134 (191)
201 PRK08154 anaerobic benzoate ca 98.1 5.1E-06 1.1E-10 92.5 8.1 40 514-553 130-169 (309)
202 KOG3354 Gluconate kinase [Carb 98.1 2.5E-05 5.4E-10 76.5 11.4 39 60-98 10-48 (191)
203 cd07891 CYTH-like_CthTTM-like_ 98.1 1.5E-05 3.3E-10 79.1 10.1 85 749-838 34-120 (148)
204 TIGR01360 aden_kin_iso1 adenyl 98.1 7.3E-06 1.6E-10 83.8 8.1 118 517-651 3-129 (188)
205 PRK05537 bifunctional sulfate 98.1 1.5E-05 3.3E-10 95.4 11.6 128 34-186 367-509 (568)
206 cd02030 NDUO42 NADH:Ubiquinone 98.1 1.7E-05 3.6E-10 84.0 10.6 59 168-226 142-202 (219)
207 COG1428 Deoxynucleoside kinase 98.1 1.5E-05 3.3E-10 82.3 9.9 59 168-226 126-188 (216)
208 cd00464 SK Shikimate kinase (S 98.1 8.1E-06 1.7E-10 80.6 7.6 35 520-554 2-36 (154)
209 TIGR00174 miaA tRNA isopenteny 98.1 1.1E-06 2.4E-11 96.2 1.3 171 64-254 1-175 (287)
210 PRK11860 bifunctional 3-phosph 98.1 3.8E-06 8.2E-11 102.8 5.9 128 516-650 441-595 (661)
211 COG0529 CysC Adenylylsulfate k 98.1 1.1E-05 2.5E-10 80.8 8.0 47 57-103 18-69 (197)
212 PRK14737 gmk guanylate kinase; 98.1 1.8E-05 3.9E-10 81.7 9.7 155 516-689 3-169 (186)
213 COG3265 GntK Gluconate kinase 98.0 4.4E-05 9.6E-10 74.5 11.5 117 68-210 1-130 (161)
214 PLN02674 adenylate kinase 98.0 2.5E-05 5.4E-10 83.8 10.6 121 60-190 29-159 (244)
215 cd02021 GntK Gluconate kinase 98.0 4.1E-05 8.8E-10 75.7 11.3 36 519-554 1-36 (150)
216 cd01428 ADK Adenylate kinase ( 98.0 8.1E-06 1.7E-10 84.0 6.5 117 520-651 2-127 (194)
217 PRK12339 2-phosphoglycerate ki 98.0 1.6E-05 3.5E-10 82.8 8.4 38 61-98 2-39 (197)
218 PRK14530 adenylate kinase; Pro 98.0 1.3E-05 2.8E-10 84.5 7.8 118 519-650 5-127 (215)
219 PRK12338 hypothetical protein; 98.0 1.1E-05 2.4E-10 89.3 7.3 39 516-554 3-41 (319)
220 COG1428 Deoxynucleoside kinase 98.0 8.8E-06 1.9E-10 84.1 6.0 62 628-694 126-194 (216)
221 KOG3347 Predicted nucleotide k 98.0 3.6E-05 7.8E-10 75.1 9.8 101 63-190 8-114 (176)
222 PRK14528 adenylate kinase; Pro 98.0 2.6E-05 5.6E-10 80.5 9.5 117 519-651 3-130 (186)
223 KOG3079 Uridylate kinase/adeny 98.0 3.4E-05 7.4E-10 77.9 9.9 126 59-193 5-137 (195)
224 COG0563 Adk Adenylate kinase a 98.0 5.5E-05 1.2E-09 77.5 11.6 117 64-191 2-129 (178)
225 TIGR00041 DTMP_kinase thymidyl 98.0 8.2E-05 1.8E-09 76.8 13.0 26 62-87 3-28 (195)
226 PRK00300 gmk guanylate kinase; 98.0 3.4E-05 7.4E-10 80.3 10.0 27 61-87 4-30 (205)
227 TIGR03574 selen_PSTK L-seryl-t 98.0 2.4E-05 5.2E-10 84.3 9.0 133 64-226 1-151 (249)
228 PRK00889 adenylylsulfate kinas 98.0 3.6E-05 7.7E-10 78.3 9.7 40 61-100 3-47 (175)
229 PRK03731 aroL shikimate kinase 97.9 1.8E-05 4E-10 79.9 7.4 36 519-554 4-39 (171)
230 TIGR01351 adk adenylate kinase 97.9 1.7E-05 3.6E-10 83.3 6.7 116 520-650 2-125 (210)
231 PLN02748 tRNA dimethylallyltra 97.9 4.6E-06 9.9E-11 96.9 2.6 107 60-167 20-129 (468)
232 PRK14531 adenylate kinase; Pro 97.9 5E-05 1.1E-09 78.0 9.8 37 519-555 4-40 (183)
233 PF00406 ADK: Adenylate kinase 97.9 2.6E-05 5.7E-10 77.3 7.5 112 67-188 1-122 (151)
234 PRK13946 shikimate kinase; Pro 97.9 2.6E-05 5.6E-10 80.2 7.7 36 517-552 10-45 (184)
235 cd02027 APSK Adenosine 5'-phos 97.9 2.4E-05 5.2E-10 77.8 7.0 36 64-99 1-41 (149)
236 PF13671 AAA_33: AAA domain; P 97.9 1.2E-05 2.6E-10 78.3 4.7 36 519-554 1-36 (143)
237 PRK14526 adenylate kinase; Pro 97.9 4.5E-05 9.8E-10 80.3 9.1 116 65-190 3-123 (211)
238 cd01673 dNK Deoxyribonucleosid 97.9 6.5E-05 1.4E-09 77.5 10.2 59 168-226 124-185 (193)
239 PRK13975 thymidylate kinase; P 97.9 0.00016 3.4E-09 74.7 13.1 27 63-89 3-29 (196)
240 PF13189 Cytidylate_kin2: Cyti 97.9 4.1E-05 8.9E-10 78.5 8.2 160 64-226 1-178 (179)
241 PRK14532 adenylate kinase; Pro 97.9 4.3E-05 9.4E-10 78.5 8.4 35 520-554 3-37 (188)
242 PRK14021 bifunctional shikimat 97.9 5.9E-05 1.3E-09 90.2 10.7 39 60-98 4-42 (542)
243 PRK05057 aroK shikimate kinase 97.8 8E-05 1.7E-09 75.9 10.1 36 517-552 4-39 (172)
244 PRK02496 adk adenylate kinase; 97.8 5E-05 1.1E-09 77.9 8.7 36 519-554 3-38 (184)
245 PRK00279 adk adenylate kinase; 97.8 4.7E-05 1E-09 80.2 8.6 36 519-554 2-37 (215)
246 PRK04220 2-phosphoglycerate ki 97.8 9E-05 1.9E-09 81.5 10.9 39 60-98 90-129 (301)
247 COG3954 PrkB Phosphoribulokina 97.8 0.00012 2.5E-09 74.1 10.3 160 61-221 4-203 (289)
248 TIGR03263 guanyl_kin guanylate 97.8 5.5E-05 1.2E-09 77.0 8.5 25 519-543 3-27 (180)
249 PTZ00088 adenylate kinase 1; P 97.8 3.9E-05 8.5E-10 81.7 7.2 122 515-650 4-131 (229)
250 TIGR01313 therm_gnt_kin carboh 97.8 5.2E-05 1.1E-09 76.0 7.7 35 520-554 1-35 (163)
251 PRK05416 glmZ(sRNA)-inactivati 97.8 0.00016 3.5E-09 79.6 12.0 31 60-91 4-34 (288)
252 KOG1384 tRNA delta(2)-isopente 97.8 4E-05 8.6E-10 83.7 7.1 127 61-189 6-158 (348)
253 PRK00698 tmk thymidylate kinas 97.8 0.0002 4.3E-09 74.3 12.1 25 62-86 3-27 (205)
254 PF07931 CPT: Chloramphenicol 97.8 0.00016 3.4E-09 73.8 10.9 151 63-240 2-172 (174)
255 PF01202 SKI: Shikimate kinase 97.8 4.5E-05 9.8E-10 76.5 6.6 130 71-228 1-144 (158)
256 PLN02459 probable adenylate ki 97.7 0.00017 3.6E-09 78.0 10.8 119 63-190 30-154 (261)
257 PRK14529 adenylate kinase; Pro 97.7 0.00017 3.6E-09 76.5 10.3 116 64-190 2-127 (223)
258 cd00227 CPT Chloramphenicol (C 97.7 9.7E-05 2.1E-09 75.3 8.2 37 518-554 3-41 (175)
259 PRK09825 idnK D-gluconate kina 97.7 0.00021 4.5E-09 73.2 10.6 36 63-98 4-39 (176)
260 PRK12269 bifunctional cytidyla 97.7 0.00012 2.6E-09 91.0 10.3 38 518-555 35-72 (863)
261 cd01672 TMPK Thymidine monopho 97.7 0.00037 8E-09 71.5 12.2 30 64-93 2-34 (200)
262 COG2074 2-phosphoglycerate kin 97.7 0.00014 3.1E-09 76.7 8.8 39 58-96 85-124 (299)
263 PRK12339 2-phosphoglycerate ki 97.6 0.00019 4.1E-09 74.8 9.3 39 516-554 2-40 (197)
264 smart00072 GuKc Guanylate kina 97.6 0.00034 7.5E-09 71.9 10.9 25 62-86 2-26 (184)
265 PRK13808 adenylate kinase; Pro 97.6 0.00015 3.1E-09 81.1 8.4 114 520-649 3-127 (333)
266 PLN02842 nucleotide kinase 97.6 0.00018 3.9E-09 84.2 9.4 115 67-190 2-122 (505)
267 PRK13947 shikimate kinase; Pro 97.6 0.00024 5.3E-09 71.6 9.0 34 520-553 4-37 (171)
268 COG1936 Predicted nucleotide k 97.6 0.00018 3.9E-09 72.3 7.5 104 519-659 2-108 (180)
269 TIGR02322 phosphon_PhnN phosph 97.6 0.00022 4.7E-09 72.7 8.4 125 519-650 3-132 (179)
270 PF06414 Zeta_toxin: Zeta toxi 97.6 0.00014 3.1E-09 75.7 7.2 42 59-100 12-56 (199)
271 PF03668 ATP_bind_2: P-loop AT 97.6 0.00032 6.9E-09 76.2 10.0 58 171-229 84-142 (284)
272 PRK11545 gntK gluconate kinase 97.6 0.00036 7.9E-09 70.4 9.8 30 68-97 1-30 (163)
273 cd02030 NDUO42 NADH:Ubiquinone 97.6 0.00041 8.8E-09 73.5 10.4 57 629-687 143-200 (219)
274 PLN02674 adenylate kinase 97.6 0.0004 8.6E-09 74.6 10.3 121 515-650 29-159 (244)
275 KOG3079 Uridylate kinase/adeny 97.6 0.00016 3.5E-09 73.2 6.8 125 514-652 5-136 (195)
276 PRK03846 adenylylsulfate kinas 97.5 0.0005 1.1E-08 71.6 10.8 41 513-553 20-65 (198)
277 PRK00300 gmk guanylate kinase; 97.5 0.00038 8.1E-09 72.5 9.7 27 516-542 4-30 (205)
278 COG0563 Adk Adenylate kinase a 97.5 5E-05 1.1E-09 77.8 3.0 116 520-651 3-129 (178)
279 PF03308 ArgK: ArgK protein; 97.5 0.00029 6.3E-09 75.4 8.5 122 48-178 15-152 (266)
280 cd01673 dNK Deoxyribonucleosid 97.5 0.00037 7.9E-09 71.9 9.1 48 628-677 124-171 (193)
281 PRK12337 2-phosphoglycerate ki 97.5 0.00019 4E-09 83.0 7.5 39 60-98 253-292 (475)
282 PF00625 Guanylate_kin: Guanyl 97.5 0.00033 7.1E-09 71.9 8.6 167 62-238 2-176 (183)
283 PRK05506 bifunctional sulfate 97.5 0.00046 1E-08 84.4 11.3 45 57-101 455-504 (632)
284 PHA00729 NTP-binding motif con 97.5 0.00073 1.6E-08 71.5 11.1 107 60-190 15-140 (226)
285 COG0194 Gmk Guanylate kinase [ 97.5 0.00083 1.8E-08 68.5 11.0 27 61-87 3-29 (191)
286 PHA02530 pseT polynucleotide k 97.5 0.00017 3.6E-09 79.7 6.6 37 517-553 2-39 (300)
287 COG1703 ArgK Putative periplas 97.5 0.00056 1.2E-08 74.3 10.2 118 50-178 39-174 (323)
288 KOG3354 Gluconate kinase [Carb 97.5 0.00011 2.4E-09 72.2 4.3 47 515-561 10-56 (191)
289 PF08433 KTI12: Chromatin asso 97.5 0.00036 7.8E-09 76.2 8.6 110 62-194 1-124 (270)
290 PF01583 APS_kinase: Adenylyls 97.5 0.00025 5.5E-09 70.9 6.7 37 516-552 1-42 (156)
291 PRK13948 shikimate kinase; Pro 97.4 0.00041 8.8E-09 71.4 8.4 39 515-553 8-46 (182)
292 PRK10078 ribose 1,5-bisphospho 97.4 0.0002 4.3E-09 73.7 6.2 33 519-551 4-36 (186)
293 PRK13951 bifunctional shikimat 97.4 0.00045 9.7E-09 81.6 9.9 36 64-99 2-37 (488)
294 TIGR01663 PNK-3'Pase polynucle 97.4 0.00057 1.2E-08 80.9 10.5 95 59-191 366-470 (526)
295 TIGR03575 selen_PSTK_euk L-ser 97.4 0.00032 7E-09 78.8 7.6 126 65-190 2-176 (340)
296 cd07761 CYTH-like_CthTTM-like 97.4 0.00087 1.9E-08 66.5 9.7 82 750-837 33-117 (146)
297 COG4088 Predicted nucleotide k 97.4 0.00035 7.5E-09 71.9 6.8 34 62-95 1-37 (261)
298 PRK14738 gmk guanylate kinase; 97.4 0.001 2.3E-08 69.7 10.6 26 59-84 10-35 (206)
299 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00026 5.6E-09 76.3 6.0 33 519-551 1-38 (249)
300 PRK09825 idnK D-gluconate kina 97.3 0.0011 2.3E-08 67.9 10.0 36 519-554 5-40 (176)
301 COG1703 ArgK Putative periplas 97.3 0.0012 2.6E-08 71.7 10.6 122 503-639 37-175 (323)
302 PHA00729 NTP-binding motif con 97.3 0.0015 3.3E-08 69.1 11.0 105 516-649 16-139 (226)
303 COG0645 Predicted kinase [Gene 97.3 0.0015 3.3E-08 65.5 10.4 111 63-191 2-126 (170)
304 COG3265 GntK Gluconate kinase 97.3 0.00092 2E-08 65.5 8.2 43 523-565 1-43 (161)
305 TIGR00041 DTMP_kinase thymidyl 97.3 0.0014 3.1E-08 67.5 10.2 26 517-542 3-28 (195)
306 PRK05537 bifunctional sulfate 97.2 0.0011 2.3E-08 79.9 10.0 62 487-551 365-432 (568)
307 PRK04220 2-phosphoglycerate ki 97.2 0.00029 6.3E-09 77.5 4.7 39 514-552 89-128 (301)
308 PLN02459 probable adenylate ki 97.2 0.0012 2.5E-08 71.6 9.0 122 516-650 28-154 (261)
309 COG0703 AroK Shikimate kinase 97.2 0.00091 2E-08 67.7 7.7 35 520-554 5-39 (172)
310 smart00072 GuKc Guanylate kina 97.2 0.0016 3.5E-08 66.9 9.8 121 518-648 3-133 (184)
311 PRK00091 miaA tRNA delta(2)-is 97.2 0.00028 6E-09 78.4 4.4 39 516-554 3-43 (307)
312 TIGR00455 apsK adenylylsulfate 97.2 0.0019 4.2E-08 66.2 10.3 40 513-552 14-58 (184)
313 cd07756 CYTH-like_Pase_CHAD Un 97.2 0.00096 2.1E-08 69.5 8.1 117 727-847 32-177 (197)
314 cd02027 APSK Adenosine 5'-phos 97.2 0.00071 1.5E-08 67.3 6.6 34 519-552 1-39 (149)
315 COG0529 CysC Adenylylsulfate k 97.2 0.0017 3.7E-08 65.5 9.0 40 513-552 19-63 (197)
316 PF06414 Zeta_toxin: Zeta toxi 97.2 0.0008 1.7E-08 70.1 7.1 41 513-553 11-54 (199)
317 PRK13973 thymidylate kinase; P 97.2 0.0015 3.3E-08 68.8 9.2 31 63-93 4-37 (213)
318 PRK14526 adenylate kinase; Pro 97.2 0.0014 3.1E-08 69.1 8.7 35 520-554 3-37 (211)
319 PF13189 Cytidylate_kin2: Cyti 97.1 0.00025 5.3E-09 72.8 2.8 132 519-653 1-138 (179)
320 COG2019 AdkA Archaeal adenylat 97.1 0.0012 2.6E-08 66.0 7.3 36 61-96 3-39 (189)
321 PRK14529 adenylate kinase; Pro 97.1 0.0017 3.7E-08 68.9 9.0 116 520-651 3-128 (223)
322 PF01745 IPT: Isopentenyl tran 97.1 0.0021 4.6E-08 66.9 9.3 40 62-101 1-42 (233)
323 cd07374 CYTH-like_Pase CYTH-li 97.1 0.00079 1.7E-08 68.5 6.1 97 729-832 33-153 (174)
324 PF07931 CPT: Chloramphenicol 97.1 0.00086 1.9E-08 68.4 6.1 37 518-554 2-40 (174)
325 PRK13975 thymidylate kinase; P 97.1 0.0023 5E-08 66.0 9.4 26 518-543 3-28 (196)
326 TIGR03575 selen_PSTK_euk L-ser 97.1 0.00034 7.5E-09 78.5 3.4 35 520-554 2-42 (340)
327 KOG3877 NADH:ubiquinone oxidor 97.0 0.00046 9.9E-09 73.5 3.6 39 516-554 70-111 (393)
328 KOG0635 Adenosine 5'-phosphosu 97.0 0.0026 5.6E-08 62.3 8.1 42 61-102 30-76 (207)
329 COG0194 Gmk Guanylate kinase [ 97.0 0.0037 8E-08 63.8 9.5 125 517-653 4-138 (191)
330 PF00406 ADK: Adenylate kinase 97.0 0.0012 2.7E-08 65.4 5.9 112 522-648 1-122 (151)
331 PLN02840 tRNA dimethylallyltra 97.0 0.00064 1.4E-08 78.1 4.2 40 515-554 19-60 (421)
332 PF00625 Guanylate_kin: Guanyl 96.9 0.002 4.4E-08 66.0 7.5 122 518-649 3-134 (183)
333 PLN02165 adenylate isopentenyl 96.9 0.00069 1.5E-08 75.6 4.1 37 515-551 41-77 (334)
334 COG4639 Predicted kinase [Gene 96.9 0.002 4.3E-08 63.8 6.7 102 62-190 2-118 (168)
335 KOG3347 Predicted nucleotide k 96.9 0.0036 7.8E-08 61.5 8.3 101 520-650 10-114 (176)
336 TIGR01663 PNK-3'Pase polynucle 96.9 0.0026 5.6E-08 75.5 8.4 38 514-551 366-403 (526)
337 COG0378 HypB Ni2+-binding GTPa 96.9 0.0034 7.4E-08 64.5 8.1 42 513-554 8-54 (202)
338 PRK09435 membrane ATPase/prote 96.8 0.0013 2.8E-08 73.8 5.1 42 510-551 49-95 (332)
339 PRK05416 glmZ(sRNA)-inactivati 96.8 0.0064 1.4E-07 67.1 10.3 26 516-542 5-30 (288)
340 KOG3877 NADH:ubiquinone oxidor 96.8 0.0048 1E-07 65.9 8.7 39 60-98 69-110 (393)
341 COG1660 Predicted P-loop-conta 96.8 0.0094 2E-07 63.6 10.8 59 171-229 85-143 (286)
342 PF03308 ArgK: ArgK protein; 96.8 0.0013 2.7E-08 70.6 4.3 120 505-639 17-153 (266)
343 PLN02842 nucleotide kinase 96.8 0.002 4.4E-08 75.6 6.3 115 522-650 2-122 (505)
344 PRK14738 gmk guanylate kinase; 96.8 0.0048 1E-07 64.7 8.5 28 513-540 9-36 (206)
345 PF01202 SKI: Shikimate kinase 96.8 0.00094 2E-08 66.9 3.1 29 526-554 1-29 (158)
346 PRK14021 bifunctional shikimat 96.7 0.0025 5.3E-08 76.5 7.1 37 518-554 7-43 (542)
347 PRK09435 membrane ATPase/prote 96.7 0.0024 5.3E-08 71.6 6.3 116 53-177 47-178 (332)
348 PRK07933 thymidylate kinase; V 96.7 0.0037 8.1E-08 66.0 6.9 24 64-87 2-25 (213)
349 PF00004 AAA: ATPase family as 96.6 0.002 4.4E-08 61.3 4.3 31 65-95 1-31 (132)
350 TIGR00174 miaA tRNA isopenteny 96.6 0.0012 2.6E-08 72.6 3.0 36 519-554 1-38 (287)
351 PLN02748 tRNA dimethylallyltra 96.6 0.0015 3.2E-08 76.4 3.8 40 515-554 20-61 (468)
352 COG4639 Predicted kinase [Gene 96.6 0.0025 5.5E-08 63.1 4.6 36 517-554 2-37 (168)
353 PF00448 SRP54: SRP54-type pro 96.6 0.0015 3.2E-08 68.2 3.2 38 517-554 1-43 (196)
354 PF08433 KTI12: Chromatin asso 96.6 0.0043 9.2E-08 67.9 6.8 105 519-651 3-121 (270)
355 PLN02924 thymidylate kinase 96.5 0.015 3.1E-07 61.9 10.4 28 60-87 14-41 (220)
356 PRK00889 adenylylsulfate kinas 96.5 0.0024 5.3E-08 64.8 3.9 37 516-552 3-44 (175)
357 PRK13951 bifunctional shikimat 96.5 0.0037 8.1E-08 73.9 5.9 36 519-554 2-37 (488)
358 COG4088 Predicted nucleotide k 96.4 0.0038 8.1E-08 64.5 5.0 30 519-548 3-35 (261)
359 PF00004 AAA: ATPase family as 96.4 0.0024 5.2E-08 60.8 3.3 33 520-552 1-33 (132)
360 COG0378 HypB Ni2+-binding GTPa 96.4 0.018 3.9E-07 59.3 9.6 37 62-98 13-53 (202)
361 PRK13973 thymidylate kinase; P 96.3 0.0091 2E-07 63.0 7.4 32 517-548 3-37 (213)
362 PF13521 AAA_28: AAA domain; P 96.3 0.0032 7E-08 63.2 3.8 32 65-99 2-33 (163)
363 PF00448 SRP54: SRP54-type pro 96.3 0.0033 7.2E-08 65.5 3.9 37 62-98 1-42 (196)
364 PRK11545 gntK gluconate kinase 96.3 0.0026 5.7E-08 64.2 3.0 31 523-553 1-31 (163)
365 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0085 1.9E-07 58.5 5.9 37 60-96 20-57 (133)
366 COG0324 MiaA tRNA delta(2)-iso 96.2 0.0038 8.2E-08 69.0 3.7 39 516-554 2-42 (308)
367 PLN02772 guanylate kinase 96.2 0.028 6E-07 64.2 10.6 26 61-86 134-159 (398)
368 PRK13974 thymidylate kinase; P 96.2 0.027 5.9E-07 59.3 9.9 25 63-87 4-28 (212)
369 PRK10751 molybdopterin-guanine 96.1 0.0049 1.1E-07 62.9 3.9 28 515-542 4-31 (173)
370 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0089 1.9E-07 58.4 5.5 29 515-543 20-48 (133)
371 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0081 1.7E-07 67.8 5.8 43 45-87 60-103 (361)
372 PRK10751 molybdopterin-guanine 96.1 0.0059 1.3E-07 62.3 4.2 28 60-87 4-31 (173)
373 PRK13976 thymidylate kinase; P 96.1 0.027 5.9E-07 59.3 9.3 24 64-87 2-25 (209)
374 PF02223 Thymidylate_kin: Thym 96.1 0.033 7.2E-07 57.1 9.7 45 168-212 118-164 (186)
375 COG2074 2-phosphoglycerate kin 96.0 0.015 3.3E-07 61.8 7.2 39 513-551 85-124 (299)
376 COG4619 ABC-type uncharacteriz 96.0 0.005 1.1E-07 61.7 3.2 23 519-541 31-53 (223)
377 COG4619 ABC-type uncharacteriz 96.0 0.0085 1.8E-07 60.2 4.6 22 64-85 31-52 (223)
378 COG3025 Uncharacterized conser 96.0 0.0079 1.7E-07 68.3 4.9 118 256-381 33-180 (432)
379 smart00763 AAA_PrkA PrkA AAA d 96.0 0.011 2.3E-07 66.9 5.9 28 515-542 76-103 (361)
380 PLN02199 shikimate kinase 96.0 0.0083 1.8E-07 65.9 5.0 37 518-554 103-139 (303)
381 PRK14729 miaA tRNA delta(2)-is 95.9 0.0057 1.2E-07 67.7 3.6 37 517-554 4-42 (300)
382 TIGR01425 SRP54_euk signal rec 95.9 0.0072 1.6E-07 69.9 4.3 38 515-552 98-140 (429)
383 PF02367 UPF0079: Uncharacteri 95.9 0.013 2.8E-07 56.4 5.3 29 60-88 13-41 (123)
384 COG1618 Predicted nucleotide k 95.9 0.0082 1.8E-07 59.9 4.0 27 61-87 4-30 (179)
385 PRK12337 2-phosphoglycerate ki 95.9 0.0069 1.5E-07 70.3 4.0 39 515-553 253-292 (475)
386 PHA03132 thymidine kinase; Pro 95.8 0.067 1.5E-06 64.0 12.2 30 62-91 257-286 (580)
387 PF03668 ATP_bind_2: P-loop AT 95.8 0.026 5.7E-07 61.6 8.1 56 631-690 84-140 (284)
388 PF13521 AAA_28: AAA domain; P 95.8 0.0062 1.3E-07 61.1 2.9 32 520-554 2-33 (163)
389 COG0125 Tmk Thymidylate kinase 95.8 0.11 2.3E-06 54.8 12.1 58 168-226 127-187 (208)
390 TIGR03499 FlhF flagellar biosy 95.8 0.011 2.4E-07 65.1 5.0 37 61-97 193-236 (282)
391 smart00382 AAA ATPases associa 95.8 0.0096 2.1E-07 56.0 4.0 26 63-88 3-28 (148)
392 TIGR03499 FlhF flagellar biosy 95.7 0.0084 1.8E-07 66.1 3.9 38 516-553 193-237 (282)
393 TIGR00750 lao LAO/AO transport 95.7 0.012 2.6E-07 65.4 5.2 42 56-97 28-74 (300)
394 TIGR00064 ftsY signal recognit 95.7 0.012 2.6E-07 64.5 4.9 38 60-97 70-112 (272)
395 cd00820 PEPCK_HprK Phosphoenol 95.7 0.012 2.5E-07 55.3 4.0 33 62-96 15-47 (107)
396 PRK06761 hypothetical protein; 95.7 0.016 3.4E-07 63.7 5.6 34 518-551 4-37 (282)
397 PRK05800 cobU adenosylcobinami 95.7 0.011 2.3E-07 60.4 4.0 27 64-90 3-29 (170)
398 PRK08099 bifunctional DNA-bind 95.6 0.011 2.4E-07 68.3 4.5 33 60-92 217-249 (399)
399 TIGR00101 ureG urease accessor 95.6 0.01 2.3E-07 61.9 3.9 36 517-552 1-40 (199)
400 cd00071 GMPK Guanosine monopho 95.6 0.008 1.7E-07 58.9 2.8 24 64-87 1-24 (137)
401 PF02367 UPF0079: Uncharacteri 95.6 0.015 3.3E-07 56.0 4.6 29 515-543 13-41 (123)
402 KOG0744 AAA+-type ATPase [Post 95.6 0.033 7.2E-07 61.2 7.6 36 62-99 177-212 (423)
403 TIGR00750 lao LAO/AO transport 95.6 0.011 2.3E-07 65.8 4.1 44 509-552 26-74 (300)
404 smart00382 AAA ATPases associa 95.6 0.0089 1.9E-07 56.2 3.0 26 518-543 3-28 (148)
405 PRK06761 hypothetical protein; 95.6 0.02 4.3E-07 62.9 6.0 33 63-95 4-36 (282)
406 cd01672 TMPK Thymidine monopho 95.6 0.0089 1.9E-07 61.2 3.2 24 518-541 1-24 (200)
407 COG1126 GlnQ ABC-type polar am 95.5 0.0092 2E-07 62.3 3.1 22 63-84 29-50 (240)
408 COG1124 DppF ABC-type dipeptid 95.5 0.0093 2E-07 63.3 3.1 32 63-94 34-69 (252)
409 COG2954 Uncharacterized protei 95.5 0.024 5.3E-07 54.8 5.7 93 283-381 39-133 (156)
410 COG1124 DppF ABC-type dipeptid 95.5 0.0086 1.9E-07 63.5 2.9 24 518-541 34-57 (252)
411 cd00071 GMPK Guanosine monopho 95.5 0.0085 1.8E-07 58.7 2.6 24 519-542 1-24 (137)
412 PHA02575 1 deoxynucleoside mon 95.5 0.012 2.6E-07 62.2 3.7 31 64-95 2-33 (227)
413 TIGR01425 SRP54_euk signal rec 95.5 0.016 3.5E-07 67.2 5.1 38 60-97 98-140 (429)
414 COG1126 GlnQ ABC-type polar am 95.5 0.0092 2E-07 62.3 2.8 22 518-539 29-50 (240)
415 PF03029 ATP_bind_1: Conserved 95.5 0.0095 2.1E-07 64.0 3.1 30 67-96 1-35 (238)
416 PRK10416 signal recognition pa 95.5 0.015 3.3E-07 65.1 4.8 38 60-97 112-154 (318)
417 COG3709 Uncharacterized compon 95.5 0.083 1.8E-06 52.9 9.2 129 63-204 6-147 (192)
418 PRK10416 signal recognition pa 95.5 0.012 2.5E-07 66.0 3.8 37 515-551 112-153 (318)
419 TIGR00064 ftsY signal recognit 95.4 0.012 2.7E-07 64.4 3.8 39 515-553 70-113 (272)
420 cd03115 SRP The signal recogni 95.4 0.014 2.9E-07 59.2 3.8 34 64-97 2-40 (173)
421 COG1136 SalX ABC-type antimicr 95.4 0.011 2.4E-07 62.7 3.3 24 63-86 32-55 (226)
422 COG1136 SalX ABC-type antimicr 95.4 0.01 2.2E-07 62.9 3.0 24 518-541 32-55 (226)
423 PRK05506 bifunctional sulfate 95.4 0.039 8.4E-07 67.7 8.4 40 514-553 457-501 (632)
424 PF13555 AAA_29: P-loop contai 95.4 0.015 3.3E-07 49.0 3.4 23 519-541 25-47 (62)
425 PRK08903 DnaA regulatory inact 95.4 0.029 6.2E-07 59.5 6.4 61 36-96 12-81 (227)
426 PRK00698 tmk thymidylate kinas 95.4 0.013 2.9E-07 60.6 3.8 26 517-542 3-28 (205)
427 PF03029 ATP_bind_1: Conserved 95.4 0.008 1.7E-07 64.6 2.0 28 522-549 1-33 (238)
428 PRK11889 flhF flagellar biosyn 95.4 0.019 4.2E-07 65.5 5.1 38 60-97 239-281 (436)
429 PF13555 AAA_29: P-loop contai 95.3 0.018 4E-07 48.6 3.7 23 64-86 25-47 (62)
430 PRK14974 cell division protein 95.3 0.017 3.7E-07 65.1 4.5 37 60-96 138-179 (336)
431 COG1618 Predicted nucleotide k 95.3 0.015 3.3E-07 58.1 3.5 39 516-554 4-42 (179)
432 PRK11889 flhF flagellar biosyn 95.3 0.015 3.2E-07 66.4 3.9 38 515-552 239-281 (436)
433 TIGR00101 ureG urease accessor 95.3 0.022 4.8E-07 59.5 4.9 35 62-96 1-39 (199)
434 PLN00020 ribulose bisphosphate 95.2 0.016 3.5E-07 65.4 3.9 36 514-549 145-180 (413)
435 PRK05800 cobU adenosylcobinami 95.2 0.016 3.6E-07 59.0 3.7 26 519-544 3-28 (170)
436 cd00820 PEPCK_HprK Phosphoenol 95.2 0.013 2.8E-07 55.0 2.8 22 517-538 15-36 (107)
437 PRK14974 cell division protein 95.2 0.015 3.3E-07 65.5 3.8 38 514-551 137-179 (336)
438 PF05496 RuvB_N: Holliday junc 95.2 0.043 9.4E-07 58.1 6.7 51 40-90 22-78 (233)
439 cd03116 MobB Molybdenum is an 95.2 0.019 4.2E-07 57.8 4.0 25 62-86 1-25 (159)
440 PF03215 Rad17: Rad17 cell cyc 95.2 0.035 7.6E-07 66.1 6.7 35 58-92 41-75 (519)
441 PF01745 IPT: Isopentenyl tran 95.1 0.018 3.9E-07 60.2 3.7 34 518-551 2-35 (233)
442 PF07728 AAA_5: AAA domain (dy 95.1 0.021 4.7E-07 55.4 4.1 26 65-90 2-27 (139)
443 PF01591 6PF2K: 6-phosphofruct 95.1 0.083 1.8E-06 56.2 8.7 141 59-214 9-177 (222)
444 PF03205 MobB: Molybdopterin g 95.1 0.018 3.9E-07 56.8 3.6 24 63-86 1-24 (140)
445 KOG1970 Checkpoint RAD17-RFC c 95.1 0.024 5.2E-07 66.1 4.9 31 61-91 109-139 (634)
446 cd00009 AAA The AAA+ (ATPases 95.1 0.049 1.1E-06 51.8 6.3 26 61-86 18-43 (151)
447 cd00009 AAA The AAA+ (ATPases 95.0 0.029 6.3E-07 53.3 4.7 25 517-541 19-43 (151)
448 PRK10867 signal recognition pa 95.0 0.021 4.5E-07 66.5 4.2 38 515-552 98-141 (433)
449 cd03115 SRP The signal recogni 95.0 0.019 4.2E-07 58.1 3.5 34 519-552 2-40 (173)
450 COG3172 NadR Predicted ATPase/ 95.0 0.022 4.8E-07 56.8 3.5 29 62-90 8-36 (187)
451 PRK12724 flagellar biosynthesi 94.9 0.023 4.9E-07 65.5 4.2 37 61-97 222-264 (432)
452 COG1116 TauB ABC-type nitrate/ 94.9 0.019 4.1E-07 61.4 3.2 23 64-86 31-53 (248)
453 PRK08099 bifunctional DNA-bind 94.9 0.02 4.4E-07 66.1 3.8 32 514-545 216-247 (399)
454 cd01131 PilT Pilus retraction 94.9 0.019 4.2E-07 59.8 3.4 24 519-542 3-26 (198)
455 TIGR00390 hslU ATP-dependent p 94.9 0.026 5.6E-07 64.9 4.5 34 62-95 47-80 (441)
456 TIGR00959 ffh signal recogniti 94.9 0.023 4.9E-07 66.1 4.1 37 515-551 97-139 (428)
457 COG1134 TagH ABC-type polysacc 94.9 0.076 1.6E-06 56.6 7.6 98 64-161 55-177 (249)
458 PF13173 AAA_14: AAA domain 94.9 0.032 6.9E-07 53.8 4.5 34 63-96 3-40 (128)
459 KOG1532 GTPase XAB1, interacts 94.9 0.053 1.1E-06 58.3 6.4 39 59-97 16-59 (366)
460 PF03205 MobB: Molybdopterin g 94.9 0.021 4.5E-07 56.3 3.2 23 519-541 2-24 (140)
461 COG3840 ThiQ ABC-type thiamine 94.9 0.024 5.3E-07 57.7 3.7 101 62-162 25-160 (231)
462 PRK05201 hslU ATP-dependent pr 94.9 0.024 5.3E-07 65.2 4.1 34 62-95 50-83 (443)
463 PRK10867 signal recognition pa 94.9 0.034 7.3E-07 64.8 5.3 39 60-98 98-142 (433)
464 PRK12723 flagellar biosynthesi 94.8 0.023 4.9E-07 65.3 3.8 39 515-553 172-219 (388)
465 COG0645 Predicted kinase [Gene 94.8 0.022 4.7E-07 57.5 3.2 37 518-554 2-38 (170)
466 PRK12726 flagellar biosynthesi 94.8 0.024 5.2E-07 64.5 3.9 39 515-553 204-247 (407)
467 PRK12724 flagellar biosynthesi 94.8 0.021 4.6E-07 65.7 3.5 37 516-552 222-264 (432)
468 COG1763 MobB Molybdopterin-gua 94.8 0.023 5E-07 57.3 3.3 25 62-86 2-26 (161)
469 PRK13768 GTPase; Provisional 94.8 0.03 6.4E-07 60.8 4.5 34 62-95 2-40 (253)
470 TIGR01526 nadR_NMN_Atrans nico 94.8 0.03 6.4E-07 63.0 4.5 30 62-91 162-191 (325)
471 PRK10646 ADP-binding protein; 94.8 0.045 9.7E-07 54.7 5.2 29 515-543 26-54 (153)
472 PF07724 AAA_2: AAA domain (Cd 94.8 0.04 8.6E-07 56.2 5.0 37 62-98 3-45 (171)
473 PLN00020 ribulose bisphosphate 94.7 0.032 7E-07 63.0 4.6 36 60-95 146-181 (413)
474 PRK14961 DNA polymerase III su 94.7 0.052 1.1E-06 62.0 6.4 50 40-89 14-65 (363)
475 COG1116 TauB ABC-type nitrate/ 94.7 0.021 4.6E-07 61.0 3.0 24 518-541 30-53 (248)
476 PRK10646 ADP-binding protein; 94.7 0.061 1.3E-06 53.8 6.0 29 60-88 26-54 (153)
477 PRK00771 signal recognition pa 94.7 0.024 5.3E-07 66.1 3.7 37 515-551 93-134 (437)
478 COG0802 Predicted ATPase or ki 94.7 0.069 1.5E-06 52.9 6.3 31 57-87 20-50 (149)
479 KOG3062 RNA polymerase II elon 94.7 0.22 4.8E-06 52.3 10.1 108 62-191 1-124 (281)
480 COG2274 SunT ABC-type bacterio 94.7 0.055 1.2E-06 66.8 6.8 24 63-86 500-523 (709)
481 PF13173 AAA_14: AAA domain 94.7 0.031 6.8E-07 53.8 3.8 35 518-552 3-41 (128)
482 cd01131 PilT Pilus retraction 94.7 0.027 5.9E-07 58.7 3.6 24 64-87 3-26 (198)
483 PRK14490 putative bifunctional 94.7 0.025 5.4E-07 64.8 3.7 28 515-542 3-30 (369)
484 COG0125 Tmk Thymidylate kinase 94.7 0.046 1E-06 57.5 5.3 161 516-690 2-188 (208)
485 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.048 1E-06 57.4 5.5 48 48-96 25-77 (226)
486 COG1419 FlhF Flagellar GTP-bin 94.6 0.046 1E-06 62.3 5.6 39 516-554 202-247 (407)
487 cd03116 MobB Molybdenum is an 94.6 0.03 6.5E-07 56.5 3.7 25 518-542 2-26 (159)
488 COG1117 PstB ABC-type phosphat 94.6 0.026 5.7E-07 58.9 3.3 25 60-84 31-55 (253)
489 COG1763 MobB Molybdopterin-gua 94.6 0.024 5.3E-07 57.1 2.9 26 517-542 2-27 (161)
490 PRK12726 flagellar biosynthesi 94.6 0.039 8.5E-07 62.8 4.9 39 60-98 204-247 (407)
491 COG1117 PstB ABC-type phosphat 94.6 0.02 4.4E-07 59.7 2.4 27 514-540 30-56 (253)
492 KOG4235 Mitochondrial thymidin 94.6 0.019 4.2E-07 58.7 2.1 48 608-655 132-180 (244)
493 cd01918 HprK_C HprK/P, the bif 94.6 0.04 8.7E-07 54.8 4.3 32 63-95 15-46 (149)
494 PRK14493 putative bifunctional 94.6 0.03 6.6E-07 61.4 3.8 34 62-95 1-38 (274)
495 PRK12723 flagellar biosynthesi 94.6 0.04 8.6E-07 63.3 4.9 38 60-97 172-218 (388)
496 CHL00195 ycf46 Ycf46; Provisio 94.5 0.07 1.5E-06 63.2 7.0 61 35-95 221-292 (489)
497 PRK08903 DnaA regulatory inact 94.5 0.048 1E-06 57.8 5.2 33 518-550 43-80 (227)
498 TIGR01166 cbiO cobalt transpor 94.5 0.025 5.5E-07 58.2 2.9 20 519-538 20-39 (190)
499 COG1419 FlhF Flagellar GTP-bin 94.5 0.068 1.5E-06 61.0 6.5 39 61-99 202-247 (407)
500 PF00005 ABC_tran: ABC transpo 94.5 0.022 4.8E-07 55.0 2.3 20 519-538 13-32 (137)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=4.5e-77 Score=680.04 Aligned_cols=383 Identities=33% Similarity=0.624 Sum_probs=356.1
Q ss_pred ccceeeecCCCCcccchhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhcccc
Q 002620 482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDF 560 (899)
Q Consensus 482 ~~~~~~~~~~~~l~~~e~~~~~i~~~~~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~~~~~~~~ 560 (899)
.++++++|+|+.++|++||++.+++++.+..+.+.+++|||+||+||||||||+.|+..+ ++.+|++|+|+.......+
T Consensus 30 ~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~ 109 (656)
T PLN02318 30 SDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDG 109 (656)
T ss_pred CCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCc
Confidence 579999999999999999999999999999988889999999999999999999999988 4679999999876544567
Q ss_pred cCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCch
Q 002620 561 KYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVH 640 (899)
Q Consensus 561 ~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d 640 (899)
+|++|.++|++.+.++|..|++|+.+.+|.||+.++++.+... ....+.+|||+||+|++++.+++++|++|||++|.+
T Consensus 110 nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~-i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD 188 (656)
T PLN02318 110 NFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRT-LEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (656)
T ss_pred cCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCce-eecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence 8999999999999999999999999999999999998874322 334678999999999999999999999999999999
Q ss_pred hhHHHHhhcCccccccccch--hhHHhhccchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcC
Q 002620 641 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 718 (899)
Q Consensus 641 ~rl~Rri~RD~~~rg~~~~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m 718 (899)
.++.||+.||..++|++.+. .++...++|+|..||+|++++||++|+|+|+|+-..+++.+++++.+++.+|+|++.|
T Consensus 189 irL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L 268 (656)
T PLN02318 189 FDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVL 268 (656)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHh
Confidence 99999999999999998875 6888899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhccccccccccccCCCCCCCCCcCCCceEEEEeeCCEEEEEEeccccccCcccccceeEEehhhHHHHHHHcCce
Q 002620 719 DPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQ 798 (899)
Q Consensus 719 ~~~~v~~fv~~y~d~Y~~~~~l~~~~~~~~~~~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~~~l~~lg~~ 798 (899)
+.+ .+..+.+|+||||++|+.+. .++++|||||+|+|+|+|||++|++|++|||+|+++|||++++++|||+|||+
T Consensus 269 ~~~-~~~~~~~~~DiYl~~P~~d~---~~~~e~LRvR~~~Gk~~Ltyke~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 269 SED-HTETTEETYDIYLLPPGEDP---ETCQSYLRMRNRDGKYSLMFEEWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred hhc-cccccceeeEEEecCCCCCc---hhccceEEEEecCCEEEEEEecccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 864 77788999999999995442 35567999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeEEeecCcEEEEEecccCCCCceEEEecccHHHHHHHHhhCCCCCCccchhHHHH-HHhhCccc
Q 002620 799 AVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGVDKEAVAAAGSTLKLDGSYTTKSYLQI-ILEKLPAV 869 (899)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~syle~-~~~~~~~~ 869 (899)
++++++|.|++|++|+|+|++||||+||++|+||+|.+|+.|.++|++|||+|+|+|+||||| +||||++.
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~~~~~~~ 416 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQLEKLVNE 416 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 68888753
No 2
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=3.3e-58 Score=525.35 Aligned_cols=363 Identities=32% Similarity=0.618 Sum_probs=323.9
Q ss_pred CCcccccCCccccccccHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecCcccccc----cc
Q 002620 28 SPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----DE 102 (899)
Q Consensus 28 ~~~~~~~~~~~is~d~~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----~~ 102 (899)
....+.+.++.+|||++|++.+++++.+.++.+++++|||+|++||||||||+.|+..+ ++.+|++|+|+... ..
T Consensus 31 ~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~n 110 (656)
T PLN02318 31 DRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN 110 (656)
T ss_pred CceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCcc
Confidence 45567788999999999999999999999988889999999999999999999999987 46899999996421 23
Q ss_pred CCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHH
Q 002620 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFS 182 (899)
Q Consensus 103 ~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~r 182 (899)
.+.|.++|...+.+.|..++.++.+.+|.||+..+.+........++.++||+||+|++.+.+++++|++|||+++.+.+
T Consensus 111 fD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDir 190 (656)
T PLN02318 111 FDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD 190 (656)
T ss_pred CCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCccHH
Confidence 45788899999999999999999999999999998877554556678899999999999999999999999999999999
Q ss_pred HHHHHHhccCCc-cCHHHHHH----hhcHHhhhhcCCCcCcCcEEEECCCC--CchhhhhhhccccccCCCCCccccccc
Q 002620 183 LISKVQYDIGDS-CSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFV--SSFREAIYKLKCRSEAPGACSISAFQG 255 (899)
Q Consensus 183 l~R~i~RD~~~r-~~~e~~~~----~~~p~~~k~Iep~~~~ADiII~N~~~--~~~~~~~~~lk~~~~~~~g~~ga~f~~ 255 (899)
+.||+.||...+ .+.+.+++ .+.|+|.+||+|++++||+||+|+|. +++++|+|+||+...+..+|.-..+..
T Consensus 191 L~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~ 270 (656)
T PLN02318 191 LVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSE 270 (656)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhh
Confidence 999999998776 46666555 45899999999999999999999887 589999999999888766664443322
Q ss_pred -----ccccccceeccccCCCCcccccccCCceeEeeeCCEEEEEEcceeecCCCccccceeEEEEehhHHHHHHhcCCc
Q 002620 256 -----NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYS 330 (899)
Q Consensus 256 -----~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGf~ 330 (899)
.+.-+|+||+.|++||..++ +|||||+++++++|||| +|+.+++|++.++.++||+|.+.++|++|||+
T Consensus 271 ~~~~~~~~~~DiYl~~P~~d~~~~~-----e~LRvR~~~Gk~~Ltyk-e~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 271 DHTETTEETYDIYLLPPGEDPETCQ-----SYLRMRNRDGKYSLMFE-EWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred ccccccceeeEEEecCCCCCchhcc-----ceEEEEecCCEEEEEEe-cccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 23456999999999987654 55599999999999999 99999999999999999999999999999999
Q ss_pred eeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCHHHHHHHHHHcCCCCCccchhHHHHHHh
Q 002620 331 VVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLE 396 (899)
Q Consensus 331 ~~~~v~K~R~~~~~~~~~v~lD~v~~lG~~fvEiE~~~~~~v~~~~~~Lgl~~~~~~~sYlel~l~ 396 (899)
+++.++|.|++|.+|+++|++|+|+|||.+|||||+.+++.|.++|++|||+++++++|||||+..
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~ 410 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQL 410 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999954
No 3
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.9e-34 Score=293.02 Aligned_cols=174 Identities=33% Similarity=0.537 Sum_probs=159.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC---cccccccccchhh------cccccCCCcccccHHHHHHHHHHHhcCCc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRR 585 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~---~vislDdfy~~~~------~~~~~~d~p~t~D~~lL~~~L~~L~~g~~ 585 (899)
.++++|||+|+|||||||+|+.|.+.|+. .+|++||||+... ....||++|.++|++++.+.|..|++|++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 45699999999999999999999999984 4999999999833 34578999999999999999999999999
Q ss_pred eecccccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch--hh
Q 002620 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--ND 662 (899)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~--~q 662 (899)
+.+|.||+.+|.|.. ......|.+|||+||+|+++ +.+++++|++|||++|.|.|+.||+.||..+||++++. .|
T Consensus 86 v~~P~yd~~~~~r~~--~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~q 163 (218)
T COG0572 86 VDLPVYDYKTHTREP--ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQ 163 (218)
T ss_pred ccccccchhcccccC--CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999985 33345788999999999998 58999999999999999999999999999999999986 79
Q ss_pred HHhhccchhhhhcccccCcccEEEcCCC
Q 002620 663 IMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 663 ~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
|.+.++|+|++||+|+++.||++|+...
T Consensus 164 y~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 164 YVKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHHhhChhhhhccCcccccceEEeecCC
Confidence 9999999999999999999999998765
No 4
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.97 E-value=6.7e-31 Score=259.76 Aligned_cols=142 Identities=24% Similarity=0.396 Sum_probs=132.8
Q ss_pred CCcccccccccccccceeccccCCCCcccccccCCceeEe-eeCCEEEEEEcceeecCCCccccceeEEEEeh----hHH
Q 002620 247 ACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR-QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL 321 (899)
Q Consensus 247 g~~ga~f~~~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR-~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v----~~~ 321 (899)
++.++.|...+.|+|+||++|||||+.||+|+ ||| ..++++.+|||||+++..+ |+|.|+|+.| .+.
T Consensus 21 ~~~~~~~~~~e~q~DiYf~~p~rdf~~tdeal-----RiR~~~~~~~~lTYKgp~ld~~~---k~r~E~E~~v~D~~~~~ 92 (178)
T COG1437 21 ASLGAKFIKEEEQEDIYFDHPCRDFADTDEAL-----RIRRINGGEVFLTYKGPKLDRES---KTREEIEIEVSDVEKAL 92 (178)
T ss_pred HhccccccceeeeeeeeeecCCcchhcCccee-----EEEEecCCcEEEEEecccccccc---cceeeEEEEeCCHHHHH
Confidence 56778899999999999999999999999999 999 6688999999999999988 9999999999 999
Q ss_pred HHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH-------HHHHHHHHHcCCCC-CccchhHH
Q 002620 322 GGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGING-PWITKSYL 391 (899)
Q Consensus 322 ~~L~~LGf~~~~~v~K~R~~~~~~~~~v~lD~v~~lG~~fvEiE~~--~~-------~~v~~~~~~Lgl~~-~~~~~sYl 391 (899)
.+|++|||.++++|+|.|++|..++++||||.|+|||. |+|||.+ +. +.+.++++.||+.. +.+++||+
T Consensus 93 ~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYl 171 (178)
T COG1437 93 EILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYL 171 (178)
T ss_pred HHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHH
Confidence 99999999999999999999999999999999999999 9999998 22 56899999999985 45999999
Q ss_pred HHHHhh
Q 002620 392 EMVLEK 397 (899)
Q Consensus 392 el~l~~ 397 (899)
||++.+
T Consensus 172 ELl~~~ 177 (178)
T COG1437 172 ELLLEK 177 (178)
T ss_pred HHHhcc
Confidence 999874
No 5
>PTZ00301 uridine kinase; Provisional
Probab=99.96 E-value=7.6e-30 Score=266.12 Aligned_cols=173 Identities=28% Similarity=0.463 Sum_probs=152.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh----C---Ccccccccccchhh------cccccCCCcccccHHHHHHHHHHHhcC
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNG 583 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l----~---~~vislDdfy~~~~------~~~~~~d~p~t~D~~lL~~~L~~L~~g 583 (899)
.++|||+|||||||||||+.|++.+ + +.++++|+||++.. .+..+|++|.++|+++|.+.|..|++|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 5899999999999999999998766 2 35889999998742 234689999999999999999999999
Q ss_pred CceecccccccccccCCccceeeccCCcEEEEEeeccc-chhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch--
Q 002620 584 RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-- 660 (899)
Q Consensus 584 ~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~-~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~-- 660 (899)
+.+.+|.||+..+++.. ..+. ..|.+|||+||+|++ .+.+++++|++|||+++.++++.||+.||..++|++.+.
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~-i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~ 160 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVT-MTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVI 160 (210)
T ss_pred CcccCCCcccccCCcCC-ceEE-eCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHH
Confidence 99999999999998874 2333 456799999999998 489999999999999999999999999999999998875
Q ss_pred hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 661 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
.+|...+.|++..||+|++..||+||++..+
T Consensus 161 ~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 161 EQYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred HHHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 5677789999999999999999999976643
No 6
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.96 E-value=1.1e-30 Score=259.07 Aligned_cols=222 Identities=22% Similarity=0.332 Sum_probs=163.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh--------CCcccccccccchhhc----ccc--------cCCCcccccHHHHH
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIV--------GCEVVSLESYFKSEQV----KDF--------KYDDFSSLDLSLLS 574 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l--------~~~vislDdfy~~~~~----~~~--------~~d~p~t~D~~lL~ 574 (899)
+-|++||++||+||||||++-+|-..+ .+..+|.||||++++. .+. ..+.+++||+.++.
T Consensus 29 ~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 29 DVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 449999999999999999999987655 2678999999999542 111 24679999999999
Q ss_pred HHHHHHhcC----Cceecccccccc----cccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHH
Q 002620 575 KNISDIRNG----RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (899)
Q Consensus 575 ~~L~~L~~g----~~v~~P~yD~~~----~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rr 646 (899)
++|+.+.++ ..+.+|.||++. |||.+.+.|...+|.+++|+|||++++..+. +|..-.++.
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~--~~~v~a~d~--------- 177 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLP--ADVVKAVDP--------- 177 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccc--hhheeccCc---------
Confidence 999998765 469999999996 7898888888888999999999999874331 111101110
Q ss_pred hhcCccccccccchhhHHhhccchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcCChhhhhcc
Q 002620 647 VQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSS 726 (899)
Q Consensus 647 i~RD~~~rg~~~~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~~~v~~f 726 (899)
++-|....+.. .....+.+.++|..--...---|+++|.|||||||.|+ +++.+|||||||..|
T Consensus 178 l~Gdl~~VN~k------L~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~----------~~~~kGMsDEeV~~F 241 (282)
T KOG2878|consen 178 LQGDLEVVNKK------LEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALR----------QDGQKGMSDEEVNDF 241 (282)
T ss_pred ccccHHHHhhH------HHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHH----------HhhccCCCHHHHHHH
Confidence 01111112222 22344555566543211111125788999999999987 456679999999999
Q ss_pred cccccccc-ccCCCCCCCCCcCCCceEEEEeeCCEEEE
Q 002620 727 AQNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGRFAL 763 (899)
Q Consensus 727 v~~y~d~Y-~~~~~l~~~~~~~~~~~irir~~~~~~~l 763 (899)
|+||||.| +++|.+.+.+.+..-.||.|-.+++||-+
T Consensus 242 V~rYmP~Yk~YL~tl~~~~~lgs~~~L~i~iDenRyp~ 279 (282)
T KOG2878|consen 242 VSRYMPAYKAYLPTLYAEGPLGSDRVLAIDIDENRYPI 279 (282)
T ss_pred HHhhhhHHHhhhhhhhhcCCCCCCeEEEEeecCCcccc
Confidence 99999999 99999988777655569999999999865
No 7
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.96 E-value=3e-29 Score=259.38 Aligned_cols=170 Identities=31% Similarity=0.549 Sum_probs=143.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---------Ccccccccccchhh--------cccccCCCcccccHHHHHHHHHHHh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKNISDIR 581 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~---------~~vislDdfy~~~~--------~~~~~~d~p~t~D~~lL~~~L~~L~ 581 (899)
||||+|||||||||||+.|+..|+ ..++++|+||.+.. ...+++++|.++|++++.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999996 23678999997622 1245789999999999999999999
Q ss_pred cCCceecccccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch
Q 002620 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (899)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~ 660 (899)
+|+.+.+|.||+.++++.+ ......+.+|||+||+|+++ +.+++++|++|||+++.++++.||+.||..+||++.+.
T Consensus 81 ~g~~i~~p~yd~~~~~~~~--~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~ 158 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP--WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEE 158 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE--EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH
T ss_pred CCCccccccccccccccee--eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCccee
Confidence 9999999999999998875 22334578999999999987 67999999999999999999999999999999999876
Q ss_pred --hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 661 --NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 661 --~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
.+|. .++|+|..||+|.+.+||+||++.-.
T Consensus 159 ~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~ 190 (194)
T PF00485_consen 159 VIAQYE-RVRPGYERYIEPQKERADIVIPSGPT 190 (194)
T ss_dssp HHHHHH-THHHHHHHCTGGGGGG-SEEEESCTS
T ss_pred EEEEee-cCChhhhhheeccccccEEEECCCCC
Confidence 3444 89999999999999999999988643
No 8
>PRK05439 pantothenate kinase; Provisional
Probab=99.95 E-value=1.4e-27 Score=260.97 Aligned_cols=239 Identities=19% Similarity=0.244 Sum_probs=172.7
Q ss_pred ccccccceecccCCCcCCCc--cccCCCcccceeeecCCCCc-ccchhhHHHHHHHHHH-------HH--cCCCCEEEee
Q 002620 455 EPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------LE--NKGLPVIVGI 522 (899)
Q Consensus 455 ~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~e~~~~~i~~~~~l-------~~--~~~~~~iIgI 522 (899)
.....+|+.+..+.+.+|++ +....++++.+.+..+.+-| ++.+-+.++....+.+ .. ..+.|++|||
T Consensus 12 ~~~r~~w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgI 91 (311)
T PRK05439 12 EFSREQWAALRDSTPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGI 91 (311)
T ss_pred eECHHHHHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEE
Confidence 56789999777677666666 33334444444443222222 2222222222221111 11 4568999999
Q ss_pred eCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhc----ccc-cCCCcccccHHHHHHHHHHHhcCCc-eecc
Q 002620 523 GGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR-TKVP 589 (899)
Q Consensus 523 ~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~~~-~~d~p~t~D~~lL~~~L~~L~~g~~-v~~P 589 (899)
+|++||||||+|+.|+..++ +.++++|+||++... +.. +++.|+++|+++|.++|..|++|+. +.+|
T Consensus 92 aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P 171 (311)
T PRK05439 92 AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAP 171 (311)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEee
Confidence 99999999999999998763 579999999998432 222 4678999999999999999999997 9999
Q ss_pred cccccccccCCccceeeccCCcEEEEEeecccc-hh------hhhcCCEEEEEEcCchhhHHHHhhcCccccc-------
Q 002620 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMG------- 655 (899)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~------l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg------- 655 (899)
.||+.++++.+. +.....+.+||||||++++. +. +++++|++|||+++.+....|++.|...-++
T Consensus 172 ~Yd~~~~d~~~~-~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~ 250 (311)
T PRK05439 172 VYSHLIYDIVPG-EKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPD 250 (311)
T ss_pred eEEeecCCcCCC-ceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 999999998753 33445678999999999985 44 4999999999999999988888888764221
Q ss_pred --------cccch------hhHHhhccchhhhhcccccCcccEEEcCCCCCCC
Q 002620 656 --------CFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (899)
Q Consensus 656 --------~~~~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl 694 (899)
.+.+. .+|.....|++.+||.|++..||+||..+.+..+
T Consensus 251 s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i 303 (311)
T PRK05439 251 SYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI 303 (311)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCce
Confidence 11111 2334457799999999999999999998765543
No 9
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.94 E-value=1e-27 Score=266.05 Aligned_cols=230 Identities=16% Similarity=0.213 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHcC-----CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhc-cc---c-------
Q 002620 502 LSVQAIQALLENK-----GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KD---F------- 560 (899)
Q Consensus 502 ~~i~~~~~l~~~~-----~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~-~~---~------- 560 (899)
||.+.+..+.... ..|+||||+|++|||||||++.|...+. +.+|++||||.+.+. .. .
T Consensus 192 w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL 271 (460)
T PLN03046 192 WCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALL 271 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhh
Confidence 4555566665422 3799999999999999999999988773 678999999986331 11 1
Q ss_pred -cCCCcccccHHHHHHHHHHH----hcCCceecccccccc----cccCCcccee-eccCCcEEEEEeecccc-hhhhhcC
Q 002620 561 -KYDDFSSLDLSLLSKNISDI----RNGRRTKVPIFDLET----GARSGFKELE-VSEDCGVIIFEGVYALH-PEIRKSL 629 (899)
Q Consensus 561 -~~d~p~t~D~~lL~~~L~~L----~~g~~v~~P~yD~~~----~~r~~~~~~~-~~~~~dVVIvEG~~~~~-~~l~~~~ 629 (899)
..+.|++||+.++.++|..+ +.|+.+.+|+|||++ +||.+.+.|. +..|.|||||||||+++ |.-.+.+
T Consensus 272 ~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l 351 (460)
T PLN03046 272 ELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVV 351 (460)
T ss_pred cccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHh
Confidence 13568999999999999888 578999999999998 4577655554 45788999999999987 3221122
Q ss_pred CEEEEEEcCchhhHHHHhhcCccccccccchhhHHhhccchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccch
Q 002620 630 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQV 709 (899)
Q Consensus 630 D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~ 709 (899)
+.. +.+. ...+..+.. |...+...++.+|.-. ..| ++++|.||++||+.|+...+.
T Consensus 352 ~~~-----D~~l----------~~VN~~L~~--Y~~~w~~~~D~li~L~--a~d--~~~Vy~WRlqQE~kLr~~gg~--- 407 (460)
T PLN03046 352 KAV-----DPQL----------EVVNKNLEA--YYDAWDKFIDAWVVIK--IQD--PSCVYQWRLQAEIAMRADGKP--- 407 (460)
T ss_pred hcc-----ChhH----------HHHHHHHHH--HHHHHHHhhceeEEee--CCC--hhHHHHHHHHHHHHHHHcCCC---
Confidence 211 1111 112222222 2111111122222110 011 357799999999999866444
Q ss_pred hhHHHhhcCChhhhhcccccccccc-ccCCCCCCCCCcC-C-CceEEEEeeCCEEE
Q 002620 710 AYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQLT-E-SDCIRVRICEGRFA 762 (899)
Q Consensus 710 ~~~~~~~~m~~~~v~~fv~~y~d~Y-~~~~~l~~~~~~~-~-~~~irir~~~~~~~ 762 (899)
||+++||.+||++|||.| +++|.+...+... . +..|+|..+.+|--
T Consensus 408 -------GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~~R~~ 456 (460)
T PLN03046 408 -------GMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDEERNP 456 (460)
T ss_pred -------CCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECCCCCc
Confidence 999999999999999999 9999987655442 2 34799998887753
No 10
>PLN02796 D-glycerate 3-kinase
Probab=99.94 E-value=1.4e-27 Score=262.16 Aligned_cols=217 Identities=17% Similarity=0.260 Sum_probs=152.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhc-ccc-----------cCCCcccccHHHHHHHH
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KDF-----------KYDDFSSLDLSLLSKNI 577 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~-~~~-----------~~d~p~t~D~~lL~~~L 577 (899)
..|++|||+|++||||||+++.|...+. +..|++||||.+... ... ..+.|++||++++.++|
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L 177 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL 177 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence 4789999999999999999999999884 568999999987432 111 12568999999999999
Q ss_pred HHHh----cCCceecccccccc----cccCCccceee-ccCCcEEEEEeecccchhh-hhcCCEEEEEEcCchhhHHHHh
Q 002620 578 SDIR----NGRRTKVPIFDLET----GARSGFKELEV-SEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRV 647 (899)
Q Consensus 578 ~~L~----~g~~v~~P~yD~~~----~~r~~~~~~~~-~~~~dVVIvEG~~~~~~~l-~~~~D~~I~vd~~~d~rl~Rri 647 (899)
..|+ .|+++.+|+|||+. +||.+.+.|.. ..|.+||||||||+++..+ .+.++. .+.+.
T Consensus 178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~-----~~~~l------ 246 (347)
T PLN02796 178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKA-----VDPQL------ 246 (347)
T ss_pred HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhc-----cChhH------
Confidence 9998 68899999999998 45765555543 4688999999999987322 111211 01111
Q ss_pred hcCccccccccchhhHHhhccchhhhhcccccCcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcCChhhhhccc
Q 002620 648 QRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA 727 (899)
Q Consensus 648 ~RD~~~rg~~~~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~~~v~~fv 727 (899)
...+..+.. |...+...++.+|.-. |+ -++++|.||++||+.|++.++. |||++||.+||
T Consensus 247 ----~~vN~~L~~--y~~~w~~~~d~~i~L~---a~-~~~~v~~WR~qQE~~l~~~~~~----------gMsde~v~~FV 306 (347)
T PLN02796 247 ----EVVNKNLEA--YYDAWDKLVDSWIVIK---VD-DPSWVYEWRLQAEIAMRAKGKP----------GMSDEEVADFV 306 (347)
T ss_pred ----HHHHHHHHH--HHHHHHHhhceEEEEe---CC-CchHHHHHHHHHHHHHHHhCCC----------CCCHHHHHHHH
Confidence 112223322 1111111223332211 11 1367899999999999977766 99999999999
Q ss_pred ccccccc-ccCCCCCCCCCcCC--CceEEEEeeCCEEE
Q 002620 728 QNFIDMY-LRLPGIPTNGQLTE--SDCIRVRICEGRFA 762 (899)
Q Consensus 728 ~~y~d~Y-~~~~~l~~~~~~~~--~~~irir~~~~~~~ 762 (899)
++|||+| +++|+++..+.... ...|+|..+.+|-.
T Consensus 307 ~~~mP~y~~y~~~l~~~~~~~~~~~~~L~i~id~~R~~ 344 (347)
T PLN02796 307 SRYMPAYKAYLPGLYAEGPGGSDPDNVLVIEIDENRNP 344 (347)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCceEEEECCCCCc
Confidence 9999999 99998876554322 34789888877643
No 11
>PLN02348 phosphoribulokinase
Probab=99.94 E-value=1.2e-26 Score=258.04 Aligned_cols=183 Identities=21% Similarity=0.355 Sum_probs=154.6
Q ss_pred HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC--------------------Ccccccccccchhhc----ccccCCC
Q 002620 509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG--------------------CEVVSLESYFKSEQV----KDFKYDD 564 (899)
Q Consensus 509 ~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l~--------------------~~vislDdfy~~~~~----~~~~~d~ 564 (899)
....+.+.|++|||+|+|||||||||+.|++.|+ +.+|++||||+.... ...+..+
T Consensus 41 ~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ld 120 (395)
T PLN02348 41 VALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALD 120 (395)
T ss_pred HhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCC
Confidence 3444567899999999999999999999999985 258999999875221 1234567
Q ss_pred cccccHHHHHHHHHHHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhH
Q 002620 565 FSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHL 643 (899)
Q Consensus 565 p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl 643 (899)
|.++|++++.+.|..|++|+.+..|.||+.+++..+. ....+.+||||||+|+++ +.+++++|++|||+++.++++
T Consensus 121 P~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~---e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl 197 (395)
T PLN02348 121 PRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP---ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKF 197 (395)
T ss_pred cccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc---EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHH
Confidence 9999999999999999999999999999999986642 234678999999999987 579999999999999999999
Q ss_pred HHHhhcCccccccccch-hhHHhhccchhhhhcccccCcccEEEcCCCCCCCC
Q 002620 644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695 (899)
Q Consensus 644 ~Rri~RD~~~rg~~~~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~ 695 (899)
.|+++||..++|.+.+. .+.+..+.|.|.+||+|.+.+||+||+- +.+.+.
T Consensus 198 ~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v-~p~~l~ 249 (395)
T PLN02348 198 AWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEV-LPTQLI 249 (395)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEe-cCCcCC
Confidence 99999999999998775 4455678999999999999999999854 445443
No 12
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.2e-26 Score=239.13 Aligned_cols=167 Identities=32% Similarity=0.568 Sum_probs=149.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCC---eEEecCccccc----------cccCCCCCCccHHHHHHHHHhhhcCCc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKD 126 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~~----------~~~~~~p~s~d~~~l~~~L~~l~~~~~ 126 (899)
.+.++|||+|+|||||||+|+.|.+.|+. .+|+.|+||+. ..+++.|+++|+++|.++|..++.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 45689999999999999999999999984 49999999883 235678999999999999999999999
Q ss_pred cccccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhh
Q 002620 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI 204 (899)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~~~ 204 (899)
+..|.|++.++.+... .....+.++||+||++++. ..+++.+|++|||+++.+.|+.|++.||...+ ++++.+++++
T Consensus 86 v~~P~yd~~~~~r~~~-~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREPE-TIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccCC-ccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999863 4455678899999999998 59999999999999999999999999999877 5887777654
Q ss_pred ----cHHhhhhcCCCcCcCcEEEECCC
Q 002620 205 ----FPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 205 ----~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
.|++++||+|++++||+||+-..
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecCC
Confidence 79999999999999999998763
No 13
>PRK05439 pantothenate kinase; Provisional
Probab=99.94 E-value=1.5e-26 Score=252.88 Aligned_cols=219 Identities=17% Similarity=0.225 Sum_probs=178.6
Q ss_pred HhhccCcccccc-CCCCCCC----CCcccccCCccccccc---cHHHHHHHHHHHHh----------------cCCCcEE
Q 002620 9 VFEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVT 64 (899)
Q Consensus 9 ~~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~is~d~---~y~~l~~~i~~~~~----------------~~~~~~i 64 (899)
-|.+++|+.|++ ..+++++ +...++++++.+|.++ +|.+|+++|..... ..+.+++
T Consensus 9 ~~~~~~r~~w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~i 88 (311)
T PRK05439 9 PYLEFSREQWAALRDSTPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFI 88 (311)
T ss_pred CceeECHHHHHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEE
Confidence 378999999999 6667665 5666889999999887 99999999965541 3367899
Q ss_pred EEEECCCCCcHHHHHHHHHHHhC-------CeEEecCcccccc---------ccCCCCCCccHHHHHHHHHhhhcCCc-c
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-T 127 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~~---------~~~~~p~s~d~~~l~~~L~~l~~~~~-i 127 (899)
|||+|++||||||+|+.|+..++ +.+|++|+||... ..++.|+++|.+.+.++|..++.|+. +
T Consensus 89 IgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v 168 (311)
T PRK05439 89 IGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNV 168 (311)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999998764 5789999998632 24678999999999999999999986 9
Q ss_pred ccccchhhhhhcccccccccCCCcEEEEEccccch-hh------hhcCCCEEEEEEcCHHHHHHHHHHhccCC-------
Q 002620 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-AR------LRSLLDIRVAVVGGVHFSLISKVQYDIGD------- 193 (899)
Q Consensus 128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~------l~~~~D~~I~Vda~~~~rl~R~i~RD~~~------- 193 (899)
..|.||+..+++.........+.++||+||++++. +. +.+++|++|||+++.+...+|++.|...-
T Consensus 169 ~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rd 248 (311)
T PRK05439 169 TAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSD 248 (311)
T ss_pred EeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999875555556678899999999885 33 48999999999999999888887776531
Q ss_pred ---------ccCHHHHHH--------hhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 194 ---------SCSLDSLID--------SIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 194 ---------r~~~e~~~~--------~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
..+.+++.+ ...|++.+||.|++.+||+||+++-
T Consensus 249 p~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~ 299 (311)
T PRK05439 249 PDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGA 299 (311)
T ss_pred cchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCC
Confidence 112232222 2269999999999999999999883
No 14
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.94 E-value=8.5e-27 Score=247.04 Aligned_cols=167 Identities=19% Similarity=0.315 Sum_probs=144.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhh-----------cccccCCC--cccccHHHHHHHHHHH
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQ-----------VKDFKYDD--FSSLDLSLLSKNISDI 580 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~-----------~~~~~~d~--p~t~D~~lL~~~L~~L 580 (899)
+|||+|+|||||||++++|++.|+ +.+|+.|+||+... ....||++ |.++|+++|.+.|..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998874 67999999999411 12368999 9999999999999999
Q ss_pred hcCCceeccccccc----------ccccCCccceee-ccCCcEEEEEeecccc----hhhhhcCCEEEEEEcCchhhHHH
Q 002620 581 RNGRRTKVPIFDLE----------TGARSGFKELEV-SEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLIS 645 (899)
Q Consensus 581 ~~g~~v~~P~yD~~----------~~~r~~~~~~~~-~~~~dVVIvEG~~~~~----~~l~~~~D~~I~vd~~~d~rl~R 645 (899)
++|+.+..|.||+. .|.+.+ |.. ..|.+|||+||++.+. +.+++++|++|||+++.++++.|
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~---~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~ir 157 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTP---WEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQ 157 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCC---cccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHH
Confidence 99999999999883 244443 332 4688999999999543 68999999999999999999999
Q ss_pred HhhcCccccccccch--hhHHhhccchhhhhcccccCcccEEEcCC
Q 002620 646 RVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (899)
Q Consensus 646 ri~RD~~~rg~~~~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (899)
|+.||..+||++.+. .+|...+ |.|..||.|++.+||++|...
T Consensus 158 RI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~ 202 (277)
T cd02029 158 KIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRV 202 (277)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEecc
Confidence 999999999999986 7888877 999999999999999998654
No 15
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.94 E-value=3.8e-26 Score=232.09 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=125.5
Q ss_pred cccccccccccccceeccccCCCCcccccccCCceeEeeeCCEEEEEEcceeecCCCccccceeEEEEeh----hHHHHH
Q 002620 249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL 324 (899)
Q Consensus 249 ~ga~f~~~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v----~~~~~L 324 (899)
.|+.+.....|+|.||+.|+++|..++.++ |||+.++++.||||||+.++.. |.|.|+|+.| +|.++|
T Consensus 23 ~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~lT~Kgp~~~~~~---~~~~E~e~~v~d~~~~~~iL 94 (174)
T TIGR00318 23 KGFKFIKKEFQHDIYFSNPCRDFASTDEAL-----RIRKLTGEKFVTYKGPKIDNES---KTRKEIEFKIEDIENALQIL 94 (174)
T ss_pred cCcccccccceEEEeecCCCcchhhCCcEE-----EEEEcCCcEEEEEeCCccCCcc---eEEEEEEEEECCHHHHHHHH
Confidence 456777889999999999999999887766 9999888999999999877655 9999999999 899999
Q ss_pred HhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCH---------HHHHHHHHHcCCCCCccchhHHHHHH
Q 002620 325 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNR---------KTVGAEALRMGINGPWITKSYLEMVL 395 (899)
Q Consensus 325 ~~LGf~~~~~v~K~R~~~~~~~~~v~lD~v~~lG~~fvEiE~~~~---------~~v~~~~~~Lgl~~~~~~~sYlel~l 395 (899)
.+|||+++++++|.|++|++++++|+||.|+|||. |||||++.+ +.+.++|++||+.++.+++||+||++
T Consensus 95 ~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG~-FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~ 173 (174)
T TIGR00318 95 KKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLGF-FLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS 173 (174)
T ss_pred HHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence 99999999999999999999999999999999998 999999832 58999999999955569999999984
No 16
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.93 E-value=4.1e-26 Score=248.02 Aligned_cols=180 Identities=19% Similarity=0.219 Sum_probs=145.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhc-c----cccCCCcccccHHHHHHHHHHHh
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-K----DFKYDDFSSLDLSLLSKNISDIR 581 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~-~----~~~~d~p~t~D~~lL~~~L~~L~ 581 (899)
.+.|++|||+||+||||||+|+.|+..+. +.++++|+||.+... . ..+++.|+++|.+++.+.+..|+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 46799999999999999999999988763 568999999987432 1 12467899999999999999999
Q ss_pred cCCc-eecccccccccccCCccceeeccCCcEEEEEeecccc-hh----------hhhcCCEEEEEEcCchhhHHHHhhc
Q 002620 582 NGRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE----------IRKSLDLWIAVVGGVHSHLISRVQR 649 (899)
Q Consensus 582 ~g~~-v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~----------l~~~~D~~I~vd~~~d~rl~Rri~R 649 (899)
+|+. +.+|.||+.++++.+. ......+.+||||||||++. +. +++++|++|||++|.+.+..|+++|
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~-~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPD-GFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred CCCCceecCccccccCCcCCC-CeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 9986 9999999999999863 33445778999999999985 33 5799999999999999999999888
Q ss_pred Cccc--cc-------------cccch------hhHHhhccchhhhhcccccCcccEEEcCCCCCCC
Q 002620 650 DKSR--MG-------------CFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (899)
Q Consensus 650 D~~~--rg-------------~~~~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl 694 (899)
...- ++ .+.+. ..|.....|++.+||.|++..||+||..+-+...
T Consensus 218 ~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~i 283 (290)
T TIGR00554 218 FLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHAV 283 (290)
T ss_pred HHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCcE
Confidence 6432 22 11101 1234467899999999999999999988765543
No 17
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=9.6e-26 Score=230.36 Aligned_cols=168 Identities=40% Similarity=0.649 Sum_probs=141.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccchh---hcccccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSE---QVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~~---~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~ 590 (899)
+|||+|++||||||||+.|+..+ ++.+|++|+||++. .....+++.|..+|++++.+.|..|++|+.+.+|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999987 36799999999864 12234677888899999999999999999999999
Q ss_pred ccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchh-hHHHHhhcCccccccccchhhHHhhccc
Q 002620 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHS-HLISRVQRDKSRMGCFMSQNDIMMTVFP 669 (899)
Q Consensus 591 yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~-rl~Rri~RD~~~rg~~~~~~q~~~~v~p 669 (899)
||+.++.+.+... ....+.+|||+||++++++.+++++|++|||+++.+. |+.||+.||..+||++.+..-..+...|
T Consensus 81 yd~~~~~~~~~~~-~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~ 159 (179)
T cd02028 81 YDFRTGKRRGYRK-LKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVP 159 (179)
T ss_pred ceeECCccCCCce-EEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhccccc
Confidence 9999998875322 3356789999999999999999999999999999998 9999999999999999876212244556
Q ss_pred hhhhhc-ccccCcccEEEc
Q 002620 670 MFQQHI-EPHLVHAHLKIR 687 (899)
Q Consensus 670 ~~~~~I-~p~~~~ADivI~ 687 (899)
+++.|+ .|.+..||++++
T Consensus 160 ~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 160 SGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred CchhhcCCCchhccceecc
Confidence 666555 568899998875
No 18
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.92 E-value=2.3e-25 Score=234.73 Aligned_cols=173 Identities=18% Similarity=0.248 Sum_probs=141.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhc----ccc-cCCCcccccHHHHHHHHHHHhc-CCc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRN-GRR 585 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~~~-~~d~p~t~D~~lL~~~L~~L~~-g~~ 585 (899)
||||+||+||||||||+.|+..+. +.++++|+||.+... +.. +++.|+++|.+++.+.|..|++ ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 689999999999999999999883 568999999987432 112 3567999999999999999999 478
Q ss_pred eecccccccccccCCccceeeccCCcEEEEEeecccch-h-----hhhcCCEEEEEEcCchhh---HHHHhhcCcccccc
Q 002620 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-E-----IRKSLDLWIAVVGGVHSH---LISRVQRDKSRMGC 656 (899)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~-~-----l~~~~D~~I~vd~~~d~r---l~Rri~RD~~~rg~ 656 (899)
+.+|.||+..+++.+. ......+.+||||||++++++ . +++++|++|||++|.+++ +.||..|+..++|+
T Consensus 81 v~~P~yd~~~~~~~~~-~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r 159 (220)
T cd02025 81 VKIPVYSHLTYDVIPG-EKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS 159 (220)
T ss_pred EEccccceeccccCCC-CceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998864 233346779999999999985 3 999999999999999986 55566666666666
Q ss_pred ccch------------------hhHHhhccchhhhhcccccCcccEEEcCCCCC
Q 002620 657 FMSQ------------------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (899)
Q Consensus 657 ~~~~------------------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (899)
.... .+|...+.|++.+||.|++..||+||..+.+.
T Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 5542 13556789999999999999999999876543
No 19
>PRK15453 phosphoribulokinase; Provisional
Probab=99.92 E-value=9.8e-25 Score=233.15 Aligned_cols=173 Identities=18% Similarity=0.282 Sum_probs=145.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc-hhh----------cccccCCC--cccccHHHHHHH
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQ----------VKDFKYDD--FSSLDLSLLSKN 576 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~-~~~----------~~~~~~d~--p~t~D~~lL~~~ 576 (899)
.++.+|||+|+|||||||+|+.|+..|+ +.+++.|+||+ +.. ....||++ |++.|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4678999999999999999999998874 67899999997 321 11238888 999999999999
Q ss_pred HHHHhcCCceeccccccc-----ccccCCc--cceeec-cCCcEEEEEeecccc----hhhhhcCCEEEEEEcCchhhHH
Q 002620 577 ISDIRNGRRTKVPIFDLE-----TGARSGF--KELEVS-EDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI 644 (899)
Q Consensus 577 L~~L~~g~~v~~P~yD~~-----~~~r~~~--~~~~~~-~~~dVVIvEG~~~~~----~~l~~~~D~~I~vd~~~d~rl~ 644 (899)
|..|++|+.+..|.|++. .+++.+. ..|+.. .+.+|||+||++.+. ..++.++|++|||+++.++++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 999999999999999743 2444421 234333 568999999999874 5799999999999999999999
Q ss_pred HHhhcCccccccccch--hhHHhhccchhhhhcccccCcccEEEcC
Q 002620 645 SRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (899)
Q Consensus 645 Rri~RD~~~rg~~~~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n 688 (899)
||+.||..+||++.+. +++.... |.|.+||.|++.+||+++..
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQR 207 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEe
Confidence 9999999999999986 6777775 99999999999999998643
No 20
>COG4240 Predicted kinase [General function prediction only]
Probab=99.91 E-value=1.3e-25 Score=227.63 Aligned_cols=200 Identities=22% Similarity=0.356 Sum_probs=137.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C---Ccccccccccchhhcc-----c-----ccCCCcccccHHHHHHH
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G---CEVVSLESYFKSEQVK-----D-----FKYDDFSSLDLSLLSKN 576 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l---~---~~vislDdfy~~~~~~-----~-----~~~d~p~t~D~~lL~~~ 576 (899)
..++|+||||+||+||||||+|..|...| | +..+|+||||++++.. . ...+.|||||+.++..+
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 45789999999999999999999988776 2 5678999999995421 1 13577999999999999
Q ss_pred HHHHhcCC-ceecccccccc----cccCCccceeeccCCcEEEEEeecccchhh-hhcCCEEEE-EEcCchhhHHHHhhc
Q 002620 577 ISDIRNGR-RTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEI-RKSLDLWIA-VVGGVHSHLISRVQR 649 (899)
Q Consensus 577 L~~L~~g~-~v~~P~yD~~~----~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l-~~~~D~~I~-vd~~~d~rl~Rri~R 649 (899)
|+.+.+|+ +|.+|.||++. |||.+...|... +.+|+|+||||+++.-+ ..++....- +.+..+..-.+
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~-~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~---- 200 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF-EVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRA---- 200 (300)
T ss_pred HHHHhcCCCCcccccccchhccCCCCCCCcccceec-ceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHH----
Confidence 99998876 47999999975 788776666543 48999999999987222 111111000 00000100000
Q ss_pred CccccccccchhhHHhhccchhhhhccccc-CcccEEEcCCCCCCCCccchhhhhccccchhhHHHhhcCChhhhhcccc
Q 002620 650 DKSRMGCFMSQNDIMMTVFPMFQQHIEPHL-VHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQ 728 (899)
Q Consensus 650 D~~~rg~~~~~~q~~~~v~p~~~~~I~p~~-~~ADivI~n~~~~rl~qe~~~~~~k~~~~~~~~~~~~~m~~~~v~~fv~ 728 (899)
| . +.-...+.|.|.+ |..-- -.|+ -|+++|.||+||||.|++ .+.+||+|+||..||+
T Consensus 201 d---v------N~kLa~Y~pL~~r-IdsLillta~-din~vy~WRlQqEhkliA----------r~~kgmsdeqv~efvn 259 (300)
T COG4240 201 D---V------NDKLAPYRPLFDR-IDSLILLTAP-DINTVYAWRLQQEHKLIA----------RLAKGMSDEQVSEFVN 259 (300)
T ss_pred H---H------HhhhhhhHHHHHH-hhheeEeccc-chHHHHHHHHHHHHHHHH----------HHhccCcHHHHHHHHH
Confidence 1 0 1112234455554 22211 1122 368899999999999985 3446999999999999
Q ss_pred cccccc-ccCC
Q 002620 729 NFIDMY-LRLP 738 (899)
Q Consensus 729 ~y~d~Y-~~~~ 738 (899)
+|++.| |++-
T Consensus 260 ~ymrsl~lylq 270 (300)
T COG4240 260 AYMRSLELYLQ 270 (300)
T ss_pred HHHHHHHHHHH
Confidence 999999 6655
No 21
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.91 E-value=3.5e-24 Score=223.93 Aligned_cols=174 Identities=32% Similarity=0.496 Sum_probs=151.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh------cccccCCCcccccHHHHHHHHHHHhcCCc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRR 585 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~~------~~~~~~d~p~t~D~~lL~~~L~~L~~g~~ 585 (899)
.++.+|||+|++|||||||++.|+..++ +.++++|+||.... ....++++|.++|++.+.+.|..++.|..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999983 56899999998632 23456889999999999999999999999
Q ss_pred eecccccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch--hh
Q 002620 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--ND 662 (899)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~--~q 662 (899)
+..|.||+.++++.+. .. ...+.+++|+||+++++ +.+.+.+|.+|||++|.++++.|++.||...+|.+.+. ..
T Consensus 84 v~~p~~d~~~~~~~~~-~~-~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~ 161 (209)
T PRK05480 84 IEIPVYDYTEHTRSKE-TI-RVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQ 161 (209)
T ss_pred cccCcccccccccCCC-eE-EeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHH
Confidence 9999999999987642 22 23567899999999997 78999999999999999999999999999888887664 45
Q ss_pred HHhhccchhhhhcccccCcccEEEcCCC
Q 002620 663 IMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 663 ~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
|...+.|.|..|++|.+..||++|+|+.
T Consensus 162 ~~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 162 YLSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHHhhhhhHHhhccHhhcceeEEecCCC
Confidence 6667889999999999999999999874
No 22
>PTZ00301 uridine kinase; Provisional
Probab=99.91 E-value=3.3e-24 Score=223.78 Aligned_cols=166 Identities=27% Similarity=0.461 Sum_probs=142.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh----C---CeEEecCccccc----------cccCCCCCCccHHHHHHHHHhhhcC
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEG 124 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g---~~vI~~D~~~~~----------~~~~~~p~s~d~~~l~~~L~~l~~~ 124 (899)
.++|||+|+|||||||+|+.|++.+ | +.++++|+||+. ..+++.|.++|++.|.+.|..++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4799999999999999999998766 3 458899999873 3456889999999999999999999
Q ss_pred CccccccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHH
Q 002620 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID 202 (899)
Q Consensus 125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~ 202 (899)
+.+..|.|++..+.+... ....++.++||+||++++. +.+.+++|++|||+++.++++.|++.||...+ .+.+.++.
T Consensus 83 ~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 999999999999887753 3445567999999999985 78999999999999999999999999998865 46665554
Q ss_pred ----hhcHHhhhhcCCCcCcCcEEEECCCC
Q 002620 203 ----SIFPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 203 ----~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (899)
...|.+.+||+|++.+||+||+++-.
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 35899999999999999999987743
No 23
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.90 E-value=1.4e-23 Score=217.03 Aligned_cols=162 Identities=31% Similarity=0.533 Sum_probs=136.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC---------CeEEecCccccc------------cccCCCCCCccHHHHHHHHHhhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG---------CTLISMENYRVG------------VDEGNDLDSIDFDALVQNLQDLT 122 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg---------~~vI~~D~~~~~------------~~~~~~p~s~d~~~l~~~L~~l~ 122 (899)
||||+|+|||||||||+.|+..|+ ..++++|+|+.. ..+++.|+++|++.+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999996 347788998652 12346789999999999999999
Q ss_pred cCCccccccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHH
Q 002620 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSL 200 (899)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~ 200 (899)
.++.+..|.|++..+.+..... ...+.++||+||++++. +.+++++|++|||+++.++++.|++.||..++ .+.+++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~-~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWII-IISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEE-EEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCcccccccccccccceeeee-ecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999988877333 34567899999999876 67999999999999999999999999999776 577777
Q ss_pred HHhh---cHHhhhhcCCCcCcCcEEEECC
Q 002620 201 IDSI---FPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 201 ~~~~---~p~~~k~Iep~~~~ADiII~N~ 226 (899)
++++ .|.+.+||+|++++||+||++.
T Consensus 160 ~~~~~~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 160 IAQYERVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp HHHHHTHHHHHHHCTGGGGGG-SEEEESC
T ss_pred EEEeecCChhhhhheeccccccEEEECCC
Confidence 7655 6999999999999999999987
No 24
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.90 E-value=2.3e-23 Score=206.34 Aligned_cols=130 Identities=26% Similarity=0.478 Sum_probs=121.3
Q ss_pred ccccccCCCCCCCCCcCCCc-eEEEE-eeCCEEEEEEeccccccCcccccceeEEeh--hhHHHHHHHcCceeeeeeeee
Q 002620 731 IDMYLRLPGIPTNGQLTESD-CIRVR-ICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEAS 806 (899)
Q Consensus 731 ~d~Y~~~~~l~~~~~~~~~~-~irir-~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~--~~~~~~l~~lg~~~~~~~~~~ 806 (899)
.|+||+.| ++++..++ ++||| ..+|+++||||||++|+.++||.++|++|+ ..+..+|.+|||.+++.|+|.
T Consensus 34 ~DiYf~~p----~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~~~il~~LGF~~~~~VkK~ 109 (178)
T COG1437 34 EDIYFDHP----CRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKALEILKRLGFKEVAVVKKT 109 (178)
T ss_pred eeeeeecC----CcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHHHHHHHHcCCceeeEEEEE
Confidence 49999999 99999988 99999 778999999999999999999999999996 699999999999999999999
Q ss_pred eEEeecCcEEEEEecccCCCCceEEE---------ecccHHHHHHHHhhCCCC-CCccchhHHHHHHhh
Q 002620 807 AFIYQDGKILIEVDHLQDAPSPYLQI---------KGVDKEAVAAAGSTLKLD-GSYTTKSYLQIILEK 865 (899)
Q Consensus 807 ~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~-~~~~~~syle~~~~~ 865 (899)
|++|..++++|++|.|+||| .|++| ...+++.+.+++++|||+ +..+|+|||||+.++
T Consensus 110 R~iY~~~~~~i~lD~VegLG-~F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlELl~~~ 177 (178)
T COG1437 110 REIYKVGNVTIELDAVEGLG-DFLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLELLLEK 177 (178)
T ss_pred EEEEeeCCEEEEEecccCCc-ccEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHHHHhcc
Confidence 99999999999999999999 89999 235668899999999995 889999999998764
No 25
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.89 E-value=1e-22 Score=221.58 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=161.4
Q ss_pred CCcccccCCccccccc---cHHHHHHHHHHHHh----------------cCCCcEEEEEECCCCCcHHHHHHHHHHHhC-
Q 002620 28 SPSILQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG- 87 (899)
Q Consensus 28 ~~~~~~~~~~~is~d~---~y~~l~~~i~~~~~----------------~~~~~~iIgItG~sGSGKSTlA~~La~~Lg- 87 (899)
+...++++++.+|.++ +|.+|.++++.+.. ..+.|++|||+|++||||||+|+.|+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~v~~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 9 EIKRLKGINEDLSLEEVATIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred HHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4456789999999877 99999999876652 135689999999999999999999987763
Q ss_pred ------CeEEecCcccccc---------ccCCCCCCccHHHHHHHHHhhhcCCc-cccccchhhhhhcccccccccCCCc
Q 002620 88 ------CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSG 151 (899)
Q Consensus 88 ------~~vI~~D~~~~~~---------~~~~~p~s~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~ 151 (899)
+.++++|+||... ...+.|+++|...+.+.+..++.|.. +..|.||+..+++.........+.+
T Consensus 89 ~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~d 168 (290)
T TIGR00554 89 WPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPD 168 (290)
T ss_pred cCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCC
Confidence 6789999997632 24578999999999999999999985 9999999999998865544557789
Q ss_pred EEEEEccccch-hh----------hhcCCCEEEEEEcCHHHHHHHHHHhccCCc----------------cCHHHHHH--
Q 002620 152 VVIVDGTYALD-AR----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLID-- 202 (899)
Q Consensus 152 vVIvEG~~l~~-~~----------l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r----------------~~~e~~~~-- 202 (899)
+||+||++++. +. +++++|++||||+|.+.+..|++.|...-+ .+.++..+
T Consensus 169 IiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~ 248 (290)
T TIGR00554 169 ILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTA 248 (290)
T ss_pred EEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHH
Confidence 99999999986 22 569999999999999999999888853211 12222222
Q ss_pred ------hhcHHhhhhcCCCcCcCcEEEECC
Q 002620 203 ------SIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 203 ------~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
...|++.++|.|++.+||+||+++
T Consensus 249 ~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~ 278 (290)
T TIGR00554 249 MTIWKEINWLNLKQNILPTRERASLILTKG 278 (290)
T ss_pred HHHHHHcchhhHHhhCCCCcccccEEEecC
Confidence 127999999999999999999988
No 26
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.88 E-value=1.8e-22 Score=210.93 Aligned_cols=175 Identities=33% Similarity=0.512 Sum_probs=150.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh------cccccCCCcccccHHHHHHHHHHHhcCC
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 584 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~~------~~~~~~d~p~t~D~~lL~~~L~~L~~g~ 584 (899)
.+...+|||+|++|||||||++.|+..++ +.++++|+||.+.. ....+++.|.++|..++.+.|+.|+.|+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 35678999999999999999999999885 67899999987632 2345678899999999999999999999
Q ss_pred ceecccccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch--h
Q 002620 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661 (899)
Q Consensus 585 ~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~--~ 661 (899)
.+.+|.||+.++++.. .....++.+++|+||++++. +.+.+.+|.+|||+++.+.++.|++.||...+|+..+. .
T Consensus 83 ~v~~p~yd~~~~~~~~--~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~ 160 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPK--ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVID 160 (207)
T ss_pred CEecccceeecCCCCC--ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHH
Confidence 9999999999888743 22234567999999999976 66889999999999999999999999999888887764 4
Q ss_pred hHHhhccchhhhhcccccCcccEEEcCCC
Q 002620 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 662 q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
+|....+|.|..|+.|.+..||+||+|+.
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 161 QYRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 56667899999999999999999998754
No 27
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.88 E-value=2.3e-22 Score=208.50 Aligned_cols=172 Identities=34% Similarity=0.517 Sum_probs=147.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCcccccccccchhh------cccccCCCcccccHHHHHHHHHHHhcCCceecc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~~~vislDdfy~~~~------~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P 589 (899)
+|||+||+||||||+++.|+..+ ++.++++|+||.+.. ....+++.|.++|++.+.+.|..++.|+.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 378999999997522 123457789999999999999999999999999
Q ss_pred cccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch--hhHHhh
Q 002620 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMT 666 (899)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~--~q~~~~ 666 (899)
.||++++.+... .. ...+.+++|+||++++. +.+.+.+|..|||+++.+.++.|++.||...||.+.+. ..+...
T Consensus 81 ~~d~~~~~~~~~-~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~ 158 (198)
T cd02023 81 VYDFKTHSRLKE-TV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKF 158 (198)
T ss_pred ccccccCcccCC-ce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence 999999987642 22 34567999999999987 78889999999999999999999999999888977654 455567
Q ss_pred ccchhhhhcccccCcccEEEcCCCCC
Q 002620 667 VFPMFQQHIEPHLVHAHLKIRNDFDP 692 (899)
Q Consensus 667 v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (899)
..+.+..|++|.+..||++|+|+-+.
T Consensus 159 ~~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 159 VKPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhhHHHhCccchhceeEEECCCCCc
Confidence 88999999999999999999987544
No 28
>PRK07429 phosphoribulokinase; Provisional
Probab=99.88 E-value=2.8e-22 Score=222.19 Aligned_cols=175 Identities=23% Similarity=0.360 Sum_probs=148.1
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchh--hccccc--CCCcccccHHHHHHHHHHHhcCCc
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSE--QVKDFK--YDDFSSLDLSLLSKNISDIRNGRR 585 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~--~~~~~~--~d~p~t~D~~lL~~~L~~L~~g~~ 585 (899)
..++|++|||+|++|||||||++.|+..++ +.++++||||... ...... .-+|.++|++++.+.+..|+.|+.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 356899999999999999999999999987 6789999997531 112222 236889999999999999999999
Q ss_pred eecccccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch-hhH
Q 002620 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDI 663 (899)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~-~q~ 663 (899)
+..|.||+.++...+ +....+.++||+||+++++ +.+++.+|++|||+++.++++.|+++||..++|.+.+. .+.
T Consensus 84 I~~P~yd~~~g~~~~---~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 84 ILKPIYNHETGTFDP---PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred eecceeecCCCCcCC---cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 999999999987653 2334567999999999765 67899999999999999999999999999999987765 455
Q ss_pred HhhccchhhhhcccccCcccEEEcCCC
Q 002620 664 MMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 664 ~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
+....|.+.+||+|.+..||+||++..
T Consensus 161 i~~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 161 IEAREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred HHHhCccHhhhhcccccCCCEEEEcCC
Confidence 667899999999999999999998753
No 29
>PLN02348 phosphoribulokinase
Probab=99.87 E-value=8.3e-22 Score=219.57 Aligned_cols=178 Identities=23% Similarity=0.355 Sum_probs=147.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC--------------------CeEEecCccccc-cc----
Q 002620 47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG--------------------CTLISMENYRVG-VD---- 101 (899)
Q Consensus 47 ~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg--------------------~~vI~~D~~~~~-~~---- 101 (899)
++...+.....+.+.+++|||+|+|||||||||+.|+..|| +.+|++|+||.. ..
T Consensus 34 ~~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~ 113 (395)
T PLN02348 34 PAASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKE 113 (395)
T ss_pred chhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhh
Confidence 34555555566678899999999999999999999999986 358999999752 11
Q ss_pred ---cCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEc
Q 002620 102 ---EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVG 177 (899)
Q Consensus 102 ---~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda 177 (899)
...+|.++|++.+.+.|..++.|+.+..|.|++.++...... ..++.++||+||.+++. ..+++.+|++|||++
T Consensus 114 ~g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~ 191 (395)
T PLN02348 114 KGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDERVRDLLDFSIYLDI 191 (395)
T ss_pred cCCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCccccccCcEEEEEEC
Confidence 123578899999999999999999999999999998765543 34567899999999987 578899999999999
Q ss_pred CHHHHHHHHHHhccCCc-cCHHHHH---HhhcHHhhhhcCCCcCcCcEEEECC
Q 002620 178 GVHFSLISKVQYDIGDS-CSLDSLI---DSIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 178 ~~~~rl~R~i~RD~~~r-~~~e~~~---~~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
+.++++.|+++||...+ .+.+++. +.+.|.+.+||+|.+.+||+||+--
T Consensus 192 ~~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 192 SDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred CHHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 99999999999998765 3555544 4568999999999999999999754
No 30
>PRK06696 uridine kinase; Validated
Probab=99.87 E-value=1.8e-21 Score=205.69 Aligned_cols=179 Identities=20% Similarity=0.252 Sum_probs=141.6
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CC--cccccccccchhhc-ccccCCCc-----ccccHHHHHHHHHHH-
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GC--EVVSLESYFKSEQV-KDFKYDDF-----SSLDLSLLSKNISDI- 580 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l---~~--~vislDdfy~~~~~-~~~~~d~p-----~t~D~~lL~~~L~~L- 580 (899)
..+.|++|||+|++||||||||+.|++.| |. .++|+||||.+... ...++++| +++|+++|.+.+..+
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45689999999999999999999999998 43 45679999998543 22344444 789999999987764
Q ss_pred hcCC--ceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCcccccccc
Q 002620 581 RNGR--RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (899)
Q Consensus 581 ~~g~--~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~ 658 (899)
..+. .+..|.||+..+..... ......+.++||+||++++.+.+++.+|.+|||+++.++++.|++.||...+|...
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~ 176 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHN-PPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYE 176 (223)
T ss_pred cCCCceeEeeeeeccccCcccCC-CceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCch
Confidence 3433 57788999998765532 22333567899999999998999999999999999999999999999988888633
Q ss_pred ch-hhHHhhccchhhhhcccc--cCcccEEEcCCCCC
Q 002620 659 SQ-NDIMMTVFPMFQQHIEPH--LVHAHLKIRNDFDP 692 (899)
Q Consensus 659 ~~-~q~~~~v~p~~~~~I~p~--~~~ADivI~n~~~~ 692 (899)
+. ..++..+.|++..|+.+. +.+||+||+|+-..
T Consensus 177 ~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~~~ 213 (223)
T PRK06696 177 EAEKMYLARYHPAQKLYIAEANPKERADVVIDNSDPA 213 (223)
T ss_pred HHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCCCC
Confidence 32 567777888888887655 78899999987643
No 31
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.86 E-value=1.1e-21 Score=206.71 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=160.7
Q ss_pred HHhhccCcccccc-CCCCCCC----CCcccccCCccccccc---cHHHHHHHHHHHH----------------hcCCCcE
Q 002620 8 RVFEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELR----------------EKKGGIV 63 (899)
Q Consensus 8 ~~~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~is~d~---~y~~l~~~i~~~~----------------~~~~~~~ 63 (899)
+.|..++|+.|+. ..+++.. +...+.++++++|+++ +|.+|+++++.+. .+...++
T Consensus 4 ~~~~~~~~~~w~~~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pf 83 (283)
T COG1072 4 SPYLIFSREQWAALRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPF 83 (283)
T ss_pred cccEEechhhhhhhhhcCccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCE
Confidence 4578899999999 6566554 5555789999999887 9999999886554 1246789
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC-------CeEEecCccccc---------cccCCCCCCccHHHHHHHHHhhhcCCc-
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD- 126 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~---------~~~~~~p~s~d~~~l~~~L~~l~~~~~- 126 (899)
+|||+|++|+||||+|+.|+..+. +.+|.||+|+.. +..+|.|++||..+|.+++..++.+.+
T Consensus 84 IIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~ 163 (283)
T COG1072 84 IIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPD 163 (283)
T ss_pred EEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999774 678999998542 446789999999999999999998765
Q ss_pred cccccchhhhhhcccccccccCCCcEEEEEccccchh-----hhhcCCCEEEEEEcCHHHHHHHHHHhccCCc
Q 002620 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (899)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~-----~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r 194 (899)
+..|.|++.+++.++......+..+++|+||++++.. .+.+.||++||||++.+...+|.+.|-...+
T Consensus 164 v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g 236 (283)
T COG1072 164 VFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFG 236 (283)
T ss_pred cccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcc
Confidence 9999999999999988888888899999999999972 6779999999999999999999999977666
No 32
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.86 E-value=1.2e-21 Score=212.56 Aligned_cols=168 Identities=21% Similarity=0.381 Sum_probs=141.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh--cc--cccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ--VK--DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~---~~vislDdfy~~~~--~~--~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (899)
+|||+|++|||||||++.|+..++ +.++++|+|+.... .. .....+|.+.+++++.+.+..|+.|+.+..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 589999999999999999999884 66999999986421 11 123346888899999999999999999999999
Q ss_pred cccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch-hhHHhhccc
Q 002620 592 DLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP 669 (899)
Q Consensus 592 D~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~-~q~~~~v~p 669 (899)
|+.++...+ .....+.++||+||+++++ +.+++++|++|||+++.+.++.|+++||..++|.+.+. .+.+....|
T Consensus 81 ~~~~~~~~~---~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~ 157 (273)
T cd02026 81 NHVTGLIDP---PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKP 157 (273)
T ss_pred cccCCCcCC---cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhch
Confidence 999987543 2234567999999999875 68999999999999999999999999999999987765 344556799
Q ss_pred hhhhhcccccCcccEEEcCC
Q 002620 670 MFQQHIEPHLVHAHLKIRND 689 (899)
Q Consensus 670 ~~~~~I~p~~~~ADivI~n~ 689 (899)
.+.+||+|.+.+||+||++.
T Consensus 158 ~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred hHHHHhccccccCcEEEEcc
Confidence 99999999999999999754
No 33
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.86 E-value=2.6e-21 Score=195.92 Aligned_cols=135 Identities=24% Similarity=0.294 Sum_probs=121.4
Q ss_pred ccccccccccccceeccccCCCCcccccccCCceeEeeeC--CEEEEEEcceeecCCCccccceeEEEEeh----hHHHH
Q 002620 250 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGG 323 (899)
Q Consensus 250 ga~f~~~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~~--~~~~ltyKg~~~~~~~~~~k~r~E~ev~v----~~~~~ 323 (899)
++.......|+|.||+.|.+++..++.++ |||..+ +++.+|||||..++.. |.+.|+|+.| +|.++
T Consensus 22 ~~~~~~~~~q~d~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~~~lT~K~~~~~~~~---~~~~E~e~~v~~~~~~~~i 93 (169)
T cd07890 22 GGAEGGREFQEDIYFDHPDRDLAATDEAL-----RLRRMGDSGKTLLTYKGPKLDGGP---KVREEIETEVADPEAMKEI 93 (169)
T ss_pred ccccccceeEeEEEEcCCchhHHhCCCcE-----EEEEeCCCCcEEEEEECCCCCCCc---cceEEEEEecCCHHHHHHH
Confidence 34445778999999999999998877777 999987 8999999998776533 8999999999 89999
Q ss_pred HHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec------CHHHHHHHHHHcCCCCC-ccchhHHHH
Q 002620 324 LLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT------NRKTVGAEALRMGINGP-WITKSYLEM 393 (899)
Q Consensus 324 L~~LGf~~~~~v~K~R~~~~~~~~~v~lD~v~~lG~~fvEiE~~------~~~~v~~~~~~Lgl~~~-~~~~sYlel 393 (899)
|.+|||.+.++++|.|.+|.+++++|+||+|+|||. |+|||++ ..+.+.++++.||+.+. .+++||++|
T Consensus 94 L~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 94 LERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HHHcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 999999999999999999999999999999999999 9999998 45899999999999885 499999975
No 34
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.85 E-value=2.1e-21 Score=198.84 Aligned_cols=156 Identities=22% Similarity=0.294 Sum_probs=123.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhc------ccccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~~~~~------~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (899)
+|||+|++||||||+|+.|++.+ ++.+|++|+||++... +..+|++|+++|++++.+.|..|++|+.+..|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998 6899999999998432 3368999999999999999999999987666666
Q ss_pred cccccccCCc------------cceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCcccc-ccc
Q 002620 592 DLETGARSGF------------KELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-GCF 657 (899)
Q Consensus 592 D~~~~~r~~~------------~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~r-g~~ 657 (899)
+....+.... .......+.++||+||.++++ +.+++++|++|||++|.+++++||+.||...- +..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 5554332110 112234667899999999987 79999999999999999999999999985442 211
Q ss_pred cc-h-hhHHhhccchhhhh
Q 002620 658 MS-Q-NDIMMTVFPMFQQH 674 (899)
Q Consensus 658 ~~-~-~q~~~~v~p~~~~~ 674 (899)
.. . ..+...|||+|.+.
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 11 1 34555789988875
No 35
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.85 E-value=5.6e-21 Score=202.86 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=134.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCcccc----ccc-----------cCCC--CCCccHHHHHHHHHhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV----GVD-----------EGND--LDSIDFDALVQNLQDL 121 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~----~~~-----------~~~~--p~s~d~~~l~~~L~~l 121 (899)
+|||+|+|||||||+++.|++.|+ +.+|+.|+||+ ++. +.+. |+++|++.|.+.+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 599999999999999999998774 67899999988 111 2234 8999999999999999
Q ss_pred hcCCccccccchhhh----------hhcccccccccCCCcEEEEEccccch----hhhhcCCCEEEEEEcCHHHHHHHHH
Q 002620 122 TEGKDTLIPMFDYQQ----------KNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKV 187 (899)
Q Consensus 122 ~~~~~i~~p~~d~~~----------~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~rl~R~i 187 (899)
.+++.+..|.|++.. +.+..+.. ...+.+++|+||.+.+. ..+++++|++|||+++.++++.|++
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~-~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWED-LPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCccc-ccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 999999999998732 22222222 23568899999998433 6899999999999999999999999
Q ss_pred HhccCCc-cCHHHHHHhh---cHHhhhhcCCCcCcCcEEEECC
Q 002620 188 QYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 188 ~RD~~~r-~~~e~~~~~~---~p~~~k~Iep~~~~ADiII~N~ 226 (899)
.||..+| .+.+.+++++ .|.|.+||.|++++||+++.-=
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~fqr~ 202 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQRV 202 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEEecc
Confidence 9999888 5888887754 6999999999999999998644
No 36
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.85 E-value=9.4e-21 Score=192.62 Aligned_cols=132 Identities=19% Similarity=0.337 Sum_probs=121.1
Q ss_pred ccccccccccCCCCCCCCCcCCCc-eEEEEeeCCEEEEEEeccccccCcccccceeEEeh--hhHHHHHHHcCceeeeee
Q 002620 727 AQNFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYI 803 (899)
Q Consensus 727 v~~y~d~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~--~~~~~~l~~lg~~~~~~~ 803 (899)
.....|+||+.| ++.+..++ |||||+.++++.||||+|+.|+.+++|+++|++|+ ..|.++|.+|||++++.+
T Consensus 30 ~~~q~D~Yfd~p----~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v 105 (174)
T TIGR00318 30 KEFQHDIYFSNP----CRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEV 105 (174)
T ss_pred ccceEEEeecCC----CcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEE
Confidence 445779999999 77776665 99999998999999999999999999999999994 799999999999999999
Q ss_pred eeeeEEeecCcEEEEEecccCCCCceEEEeccc---------HHHHHHHHhhCCCCCCccchhHHHHHH
Q 002620 804 EASAFIYQDGKILIEVDHLQDAPSPYLQIKGVD---------KEAVAAAGSTLKLDGSYTTKSYLQIIL 863 (899)
Q Consensus 804 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~syle~~~ 863 (899)
+|.|++|..++++|++|+++||| +|+||.+.. ++.+.+++++|||.+..+++||+||++
T Consensus 106 ~K~R~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~ 173 (174)
T TIGR00318 106 IKKRRIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS 173 (174)
T ss_pred EEEEEEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence 99999999999999999999999 999997743 368999999999988899999999874
No 37
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.84 E-value=6.1e-21 Score=195.01 Aligned_cols=161 Identities=43% Similarity=0.635 Sum_probs=135.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh-----CCeEEecCcccccc-------ccCCCCCCccHHHHHHHHHhhhcCCcccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGV-------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~-------~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~ 131 (899)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. ...+.+..+|++.+.+.|..+..++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999986 46899999998743 1223455689999999999999999999999
Q ss_pred chhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHH-HHHHHHHhccCCc-cCHHHHHHhh--cHH
Q 002620 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHF-SLISKVQYDIGDS-CSLDSLIDSI--FPL 207 (899)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~-rl~R~i~RD~~~r-~~~e~~~~~~--~p~ 207 (899)
||+..+.+........++.++||+||++++.+.+.+++|++|||+++.+. ++.|++.||..++ .+.+..+.++ .|.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~~ 160 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPS 160 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcccccC
Confidence 99999988765445567788999999999999999999999999999998 9999999998777 4666666643 566
Q ss_pred hhhhc-CCCcCcCcEEEE
Q 002620 208 FRKHI-EPDLHHAQIRIN 224 (899)
Q Consensus 208 ~~k~I-ep~~~~ADiII~ 224 (899)
++.++ .|.++.||+|++
T Consensus 161 ~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 161 GEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred chhhcCCCchhccceecc
Confidence 66666 568888888864
No 38
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.84 E-value=1.1e-20 Score=199.13 Aligned_cols=164 Identities=18% Similarity=0.279 Sum_probs=130.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC-------CeEEecCccccccc---------cCCCCCCccHHHHHHHHHhhhcC-Cc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVGVD---------EGNDLDSIDFDALVQNLQDLTEG-KD 126 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~~~---------~~~~p~s~d~~~l~~~L~~l~~~-~~ 126 (899)
+|||+|++||||||+|+.|+..+. +.+|++|+||.... ..+.|+++|.+.+.+.|..+..+ +.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999872 57899999986321 35678999999999999999984 68
Q ss_pred cccccchhhhhhcccccccccCCCcEEEEEccccchhh------hhcCCCEEEEEEcCHHHHHHHHHHhccC---Cc-cC
Q 002620 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR------LRSLLDIRVAVVGGVHFSLISKVQYDIG---DS-CS 196 (899)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~------l~~~~D~~I~Vda~~~~rl~R~i~RD~~---~r-~~ 196 (899)
+..|.||+..+.+........++.++||+||++++... +.+.+|++|||++|.+++..|+..|... .+ ++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887654444567789999999999853 8999999999999999976665555332 11 11
Q ss_pred HH------------HH--------HHhhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 197 LD------------SL--------IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 197 ~e------------~~--------~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
.. +. .+...|++.+||.|++.+||+||..+-
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~ 211 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGA 211 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCC
Confidence 11 11 123479999999999999999998773
No 39
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.84 E-value=2e-20 Score=195.57 Aligned_cols=167 Identities=31% Similarity=0.536 Sum_probs=140.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC---CeEEecCcccccc----------ccCCCCCCccHHHHHHHHHhhhcCCc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKD 126 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----------~~~~~p~s~d~~~l~~~L~~l~~~~~ 126 (899)
.++.+|||+|++|||||||++.|+..++ +.++++|+||... ...+.|+++|++.+.+.|..+..+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999999883 6789999997632 12356789999999999999999999
Q ss_pred cccccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHH--
Q 002620 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID-- 202 (899)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~-- 202 (899)
+..|.|++..+.+... .....+.+++|+||+++++ +.+.+.+|.+|||++|.++++.|++.||...+ .+.+++.+
T Consensus 84 v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~ 162 (209)
T PRK05480 84 IEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQY 162 (209)
T ss_pred cccCcccccccccCCC-eEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHH
Confidence 9999999998877653 2334556799999999997 68889999999999999999999999997554 35555544
Q ss_pred --hhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 203 --SIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 203 --~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
+..|.+.++++|.+++||+||+|+.
T Consensus 163 ~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 163 LSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHhhhhhHHhhccHhhcceeEEecCCC
Confidence 3468999999999999999999884
No 40
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.83 E-value=2e-20 Score=197.22 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=147.9
Q ss_pred ccccccceecccCCCcCCCccccCCCcccceeeecCCCCcccchhhHHHHHHH----------HHH---------HHcCC
Q 002620 455 EPVLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSVQAI----------QAL---------LENKG 515 (899)
Q Consensus 455 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~i~~~----------~~l---------~~~~~ 515 (899)
.....+|+.++.+.+.++++ .+-..+.++.+++++.|.--...+.. +.+ ..+..
T Consensus 8 ~~~~~~w~~~~~~~~~~lt~-------~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (283)
T COG1072 8 IFSREQWAALRASTPLTLTE-------EELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQ 80 (283)
T ss_pred EechhhhhhhhhcCccccCH-------HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 46788999778887777776 33344455555555544332221111 111 12456
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhh----ccccc-CCCcccccHHHHHHHHHHHhcC
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQ----VKDFK-YDDFSSLDLSLLSKNISDIRNG 583 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~----~~~~~-~d~p~t~D~~lL~~~L~~L~~g 583 (899)
.|+||||+|+.|+||||+|+.|+..+. +.++.||+|+.+.. .+-.+ .+-|.|+|...|.+.+..+++|
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~ 160 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAG 160 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcC
Confidence 899999999999999999999999883 67999999988743 22222 3569999999999999999988
Q ss_pred Cc-eecccccccccccCCccceeeccCCcEEEEEeecccc---h--hhhhcCCEEEEEEcCchhhHHHHhhcCcccccc
Q 002620 584 RR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH---P--EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (899)
Q Consensus 584 ~~-v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~---~--~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~ 656 (899)
.+ |.+|+||+.+++..+. +..+....||||+||++++. | .+.+.+|+.||||++.+.-..|.+.|....+-.
T Consensus 161 ~~~v~aPvysh~~yD~vpd-~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~~ 238 (283)
T COG1072 161 KPDVFAPVYSHLIYDPVPD-AFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGLT 238 (283)
T ss_pred CCccccccccccccccCCC-ceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcccc
Confidence 76 9999999999999874 45566778999999999986 2 478999999999999999999999987665433
No 41
>PRK07667 uridine kinase; Provisional
Probab=99.83 E-value=4.4e-20 Score=190.94 Aligned_cols=172 Identities=17% Similarity=0.279 Sum_probs=132.2
Q ss_pred HHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhcc-cccCCC-----cccccHHHHHHH
Q 002620 508 QALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK-DFKYDD-----FSSLDLSLLSKN 576 (899)
Q Consensus 508 ~~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~~-~~~~d~-----p~t~D~~lL~~~ 576 (899)
+.+....+.+++|||+|++||||||+|+.|++.++ +.++++||||.+.... ..++.. ..++|++.|...
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~ 87 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQK 87 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHH
Confidence 34444556779999999999999999999999873 6699999999874321 111111 235788888764
Q ss_pred -HHHHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccc
Q 002620 577 -ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (899)
Q Consensus 577 -L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg 655 (899)
+..|+.++.+.+|.||+..+.+.. .....++.+|||+||++++++.+++++|.+|||++|.+.++.|.+.|+.
T Consensus 88 v~~~L~~~~~i~~P~~d~~~~~~~~--~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---- 161 (193)
T PRK07667 88 FFRKLQNETKLTLPFYHDETDTCEM--KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---- 161 (193)
T ss_pred HHHhhcCCCeEEEeeeccccccccc--cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH----
Confidence 688999999999999999977653 2222345799999999998888999999999999999999999998762
Q ss_pred cccchhhHHhhccchhhhhccc--ccCcccEEEc
Q 002620 656 CFMSQNDIMMTVFPMFQQHIEP--HLVHAHLKIR 687 (899)
Q Consensus 656 ~~~~~~q~~~~v~p~~~~~I~p--~~~~ADivI~ 687 (899)
.+. .++...+.|++..|+.. .+..||+||+
T Consensus 162 ~~~--~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 162 KNL--SKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred hHH--HHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 222 35565666888888662 2778999874
No 42
>PRK06696 uridine kinase; Validated
Probab=99.82 E-value=1.4e-19 Score=191.29 Aligned_cols=169 Identities=23% Similarity=0.274 Sum_probs=131.3
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHh---CCeE--EecCcccccccc-----CCC-----CCCccHHHHHHHHHhhh
Q 002620 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTL--ISMENYRVGVDE-----GND-----LDSIDFDALVQNLQDLT 122 (899)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~L---g~~v--I~~D~~~~~~~~-----~~~-----p~s~d~~~l~~~L~~l~ 122 (899)
..+++++|||+|++||||||+|+.|++.| |..+ +++|+||..... ... ++++|++.|.+.+....
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45678999999999999999999999998 5544 569999875321 122 36899999999988754
Q ss_pred -cCC--ccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCcc----
Q 002620 123 -EGK--DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC---- 195 (899)
Q Consensus 123 -~~~--~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~---- 195 (899)
.+. .+..|.+++..+..........++..+||+||+++++..+.+.+|++|||+++.+++++|++.||...++
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~ 177 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEE 177 (223)
T ss_pred cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchH
Confidence 332 3556678887766543333344567799999999999999999999999999999999999999954443
Q ss_pred CHHHHHHhhcHHhhhhcCCC--cCcCcEEEECC
Q 002620 196 SLDSLIDSIFPLFRKHIEPD--LHHAQIRINNR 226 (899)
Q Consensus 196 ~~e~~~~~~~p~~~k~Iep~--~~~ADiII~N~ 226 (899)
....+.+++.+.+..|+.+. +++||+||+|+
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~ 210 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNS 210 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECC
Confidence 24445567788888887443 88999999998
No 43
>PRK15453 phosphoribulokinase; Provisional
Probab=99.81 E-value=2e-19 Score=192.55 Aligned_cols=166 Identities=16% Similarity=0.265 Sum_probs=134.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCcccc-c---c-----------ccCCC--CCCccHHHHHHH
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV-G---V-----------DEGND--LDSIDFDALVQN 117 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~-~---~-----------~~~~~--p~s~d~~~l~~~ 117 (899)
.++.+|||+|+|||||||+|+.|++.|+ +.+|+.|+||+ . + .+.+. |++.|++.|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4567999999999999999999998774 67899999986 2 1 12334 899999999999
Q ss_pred HHhhhcCCccccccchhh-----hhhccccc----ccccCCCcEEEEEccccch----hhhhcCCCEEEEEEcCHHHHHH
Q 002620 118 LQDLTEGKDTLIPMFDYQ-----QKNRIGSK----VIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI 184 (899)
Q Consensus 118 L~~l~~~~~i~~p~~d~~-----~~~~~~~~----~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~rl~ 184 (899)
|..+.+++.+..|.|++. .+.+.... ....++.+++|+||.+.+. ..++.++|++|||+.+.++++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 999999888888887642 23322111 1122568899999998874 5789999999999999999999
Q ss_pred HHHHhccCCc-cCHHHHHHhh---cHHhhhhcCCCcCcCcEEEEC
Q 002620 185 SKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 225 (899)
Q Consensus 185 R~i~RD~~~r-~~~e~~~~~~---~p~~~k~Iep~~~~ADiII~N 225 (899)
|++.||..+| .+.+.+++++ +|.|.+||.|++.+||+++.-
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINFQR 207 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEEEe
Confidence 9999999888 5888877754 799999999999999997653
No 44
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.81 E-value=2.1e-19 Score=186.26 Aligned_cols=164 Identities=32% Similarity=0.544 Sum_probs=137.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEecCccccccc----------cCCCCCCccHHHHHHHHHhhhcCCccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDTLIP 130 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~----------~~~~p~s~d~~~l~~~L~~l~~~~~i~~p 130 (899)
+|||+|++||||||+++.|+..+ ++.++++|+||..+. .++.|.+++++.+.+.|..+..+..+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 378999999986432 24567889999999999999999899999
Q ss_pred cchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHH----Hhh
Q 002620 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLI----DSI 204 (899)
Q Consensus 131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~----~~~ 204 (899)
.|++..+.+..... ...+.+++|+||++++. +.+.+.+|.+|||+++.+.++.|++.||...+ .+.+... .+.
T Consensus 81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99999888765433 45567899999999997 67888999999999999999999999997555 3444333 344
Q ss_pred cHHhhhhcCCCcCcCcEEEECCCC
Q 002620 205 FPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 205 ~p~~~k~Iep~~~~ADiII~N~~~ 228 (899)
.+.+..|+++++.+||+||+|+-.
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~ 183 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGD 183 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCC
Confidence 689999999999999999998844
No 45
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.80 E-value=5.1e-19 Score=187.86 Aligned_cols=182 Identities=20% Similarity=0.228 Sum_probs=141.7
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccc-cccccccchhhc----cc-ccCCCcccccHHHHHH
Q 002620 507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEV-VSLESYFKSEQV----KD-FKYDDFSSLDLSLLSK 575 (899)
Q Consensus 507 ~~~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~v-islDdfy~~~~~----~~-~~~d~p~t~D~~lL~~ 575 (899)
+..+....+++.+|||+|++|||||||++.|+..+. +.+ +++|+||.+... +. ..++.|.++|...+.+
T Consensus 23 ~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~ 102 (229)
T PRK09270 23 LAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAA 102 (229)
T ss_pred HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHH
Confidence 334444567899999999999999999999999884 235 999999987432 11 1356789999999999
Q ss_pred HHHHHhcCC-ceecccccccccccCCccceeeccCCcEEEEEeecccc-----hhhhhcCCEEEEEEcCchhhHHHHhhc
Q 002620 576 NISDIRNGR-RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRVQR 649 (899)
Q Consensus 576 ~L~~L~~g~-~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-----~~l~~~~D~~I~vd~~~d~rl~Rri~R 649 (899)
.+..++.|+ .+.+|.||+..+..... ........+++|+||.+++. +.+.+.+|..||++++.+.++.|.+.|
T Consensus 103 ~l~~l~~~~~~i~~P~yD~~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R 181 (229)
T PRK09270 103 LLRRLRAGDDEVYWPVFDRSLEDPVAD-AIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVAR 181 (229)
T ss_pred HHHHHHcCCCceecccCCcccCCCCCC-ceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHH
Confidence 999999997 89999999998776542 22222356899999999875 367889999999999999999999999
Q ss_pred Cccccccccch-hhHH-hhccchhhhhcccccCcccEEEcCCCC
Q 002620 650 DKSRMGCFMSQ-NDIM-MTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 650 D~~~rg~~~~~-~q~~-~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
+. .+|.+.+. .+.+ ....|.+ .||.|.+..||+||+|+..
T Consensus 182 ~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 182 KL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTAT 223 (229)
T ss_pred HH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCC
Confidence 63 45665443 2333 3456666 6899999999999998753
No 46
>PRK07429 phosphoribulokinase; Provisional
Probab=99.80 E-value=3.6e-19 Score=197.44 Aligned_cols=167 Identities=24% Similarity=0.371 Sum_probs=137.7
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhC---CeEEecCcccccc----c----cCCCCCCccHHHHHHHHHhhhcCCc
Q 002620 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----D----EGNDLDSIDFDALVQNLQDLTEGKD 126 (899)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----~----~~~~p~s~d~~~l~~~L~~l~~~~~ 126 (899)
..+++++|||+|++||||||+++.|+..++ +.++++|+|+..- . ..-.|++.+++.+.+.+..+..++.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 346789999999999999999999999887 6799999986410 0 0124677888999999999999999
Q ss_pred cccccchhhhhhcccccccccCCCcEEEEEccccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHH---HH
Q 002620 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDS---LI 201 (899)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~---~~ 201 (899)
+.+|.|++.++...... ...+.++||+||++++ ...+++.||++|||+++.++++.|+++|+...+ .+.++ .+
T Consensus 84 I~~P~yd~~~g~~~~~~--~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i 161 (327)
T PRK07429 84 ILKPIYNHETGTFDPPE--YIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEI 161 (327)
T ss_pred eecceeecCCCCcCCcE--ecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 99999999987665432 2345689999999854 567889999999999999999999999998765 34444 44
Q ss_pred HhhcHHhhhhcCCCcCcCcEEEECC
Q 002620 202 DSIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 202 ~~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
+.+.|.+.+||+|.+..||+||++.
T Consensus 162 ~~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 162 EAREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHhCccHhhhhcccccCCCEEEEcC
Confidence 5679999999999999999999998
No 47
>PRK07667 uridine kinase; Provisional
Probab=99.79 E-value=6e-19 Score=182.47 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=130.9
Q ss_pred HhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCcccccccc---CCCC-------CCccHHHHHHH-HH
Q 002620 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDE---GNDL-------DSIDFDALVQN-LQ 119 (899)
Q Consensus 56 ~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~---~~~p-------~s~d~~~l~~~-L~ 119 (899)
.+.++.+++|||+|++||||||+|+.|++.++ +.++++|+|+..... .+.+ ..+|.+.|.+. +.
T Consensus 11 ~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~ 90 (193)
T PRK07667 11 KKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFR 90 (193)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHH
Confidence 34456679999999999999999999999873 579999999874321 1111 24677777765 46
Q ss_pred hhhcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHH
Q 002620 120 DLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (899)
Q Consensus 120 ~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~ 199 (899)
.+..++.+.+|.|++..+..... ....++.+++|+||+++++..+.+.+|.+|||++|.+.+++|.+.|+. .+.+.
T Consensus 91 ~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---~~~~~ 166 (193)
T PRK07667 91 KLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---KNLSK 166 (193)
T ss_pred hhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH---hHHHH
Confidence 67788899999999988765542 233455689999999999999999999999999999999999998862 35567
Q ss_pred HHHhhcHHhhhhcCC--CcCcCcEEEE
Q 002620 200 LIDSIFPLFRKHIEP--DLHHAQIRIN 224 (899)
Q Consensus 200 ~~~~~~p~~~k~Iep--~~~~ADiII~ 224 (899)
+..+++|.+..|+.. ++.+||+|++
T Consensus 167 ~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 167 FKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 778888999999842 4889999974
No 48
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.79 E-value=8.1e-19 Score=183.40 Aligned_cols=168 Identities=33% Similarity=0.540 Sum_probs=137.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC---CeEEecCcccccc----------ccCCCCCCccHHHHHHHHHhhhcCC
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGK 125 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----------~~~~~p~s~d~~~l~~~L~~l~~~~ 125 (899)
++...+|||+|++||||||+++.|+..++ +.++++|+|+... ...+.|++++...+.+.|..+..+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 34568999999999999999999998875 6789999986531 1234578899999999999999999
Q ss_pred ccccccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHH-
Q 002620 126 DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID- 202 (899)
Q Consensus 126 ~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~- 202 (899)
.+.+|.|++..+.+... ....++.+++|+||++++. ..+.+.+|.+|||+++.+.++.|++.|+...+ .+.+...+
T Consensus 83 ~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999987776432 3345667899999999965 67888999999999999999999999997654 34444443
Q ss_pred ---hhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 203 ---SIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 203 ---~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
...|.+.+++.|.+.+||+||+|+-
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 3468899999999999999999874
No 49
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.77 E-value=7.1e-18 Score=179.09 Aligned_cols=182 Identities=20% Similarity=0.334 Sum_probs=143.8
Q ss_pred cHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeE-EecCcccccc---------ccCCCCCC
Q 002620 44 GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTL-ISMENYRVGV---------DEGNDLDS 108 (899)
Q Consensus 44 ~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~v-I~~D~~~~~~---------~~~~~p~s 108 (899)
.+..|++.+..+....+++.+|||+|++|||||||++.|+..+. +.+ +++|+|+... ...+.|++
T Consensus 15 ~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~ 94 (229)
T PRK09270 15 VHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPET 94 (229)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCC
Confidence 45667777777777778899999999999999999999998774 345 9999987531 23457889
Q ss_pred ccHHHHHHHHHhhhcCC-ccccccchhhhhhcccccccccCCCcEEEEEccccch-----hhhhcCCCEEEEEEcCHHHH
Q 002620 109 IDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFS 182 (899)
Q Consensus 109 ~d~~~l~~~L~~l~~~~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-----~~l~~~~D~~I~Vda~~~~r 182 (899)
+|...+.+.+..+..+. .+.+|.|++..+..........+..+++|+||.+++. ..+.+.+|++|||+++.+.+
T Consensus 95 ~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~ 174 (229)
T PRK09270 95 FDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVL 174 (229)
T ss_pred CCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHH
Confidence 99999999999999887 8899999998877654433233356799999999975 36778999999999999999
Q ss_pred HHHHHHhccCCccCHH---HHHH-hhcHHhhhhcCCCcCcCcEEEECC
Q 002620 183 LISKVQYDIGDSCSLD---SLID-SIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 183 l~R~i~RD~~~r~~~e---~~~~-~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
++|.+.|+.....+.+ ..+. +++|.+ .++++.++.||+||.|+
T Consensus 175 ~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 175 RERLVARKLAGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMT 221 (229)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEec
Confidence 9999999643333433 3443 356666 68899999999999998
No 50
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.76 E-value=2.1e-18 Score=187.41 Aligned_cols=161 Identities=24% Similarity=0.374 Sum_probs=132.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEecCcccccc----c----cCCCCCCccHHHHHHHHHhhhcCCccccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV----D----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~----~----~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~ 132 (899)
+|||+|++||||||+++.|+..+ ++.+|++|+|++.. . ....|++.+++.+.+.+..++.++.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999877 46799999987521 0 1124667788888999999999999999999
Q ss_pred hhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHH---hhcHH
Q 002620 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID---SIFPL 207 (899)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~---~~~p~ 207 (899)
++..+...... ...+.++||+||++++. ..+.+.+|++|||+++.++++.|+++|+...+ .+.+++.+ .+.|.
T Consensus 81 ~~~~~~~~~~~--~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~ 158 (273)
T cd02026 81 NHVTGLIDPPE--LIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPD 158 (273)
T ss_pred cccCCCcCCcE--EcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchh
Confidence 99987654322 23456899999999764 68999999999999999999999999998765 35555444 45899
Q ss_pred hhhhcCCCcCcCcEEEECC
Q 002620 208 FRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 208 ~~k~Iep~~~~ADiII~N~ 226 (899)
+.+||+|.+.+||+||.+.
T Consensus 159 ~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 159 FEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred HHHHhccccccCcEEEEcc
Confidence 9999999999999999877
No 51
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.76 E-value=9.7e-19 Score=178.52 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=118.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-----------------CCCCccHHHHHHHHHhh----
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL---- 121 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~p~s~d~~~l~~~L~~l---- 121 (899)
.+|||||++||||||+++.|++ +|++++++|.+.+.+...+ ..+.+|+..|.+.++.-
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4799999999999999999988 9999999999866544332 22678888888877632
Q ss_pred hcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHH
Q 002620 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (899)
Q Consensus 122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~ 201 (899)
..-+.+.||.+.......... .....++++|.+++++..+...||.+|+|+||.+++++|.+.||+........++
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~----~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri 155 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKR----NKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARI 155 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHh----ccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHH
Confidence 233456777766665554432 1122799999999999999999999999999999999999999988888888899
Q ss_pred HhhcHHhhhhcCCCcCcCcEEEECC
Q 002620 202 DSIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 202 ~~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
+.|+|..++ ++.||+||+|+
T Consensus 156 ~~Q~~~~~k-----~~~ad~vI~N~ 175 (180)
T PF01121_consen 156 ASQMPDEEK-----RKRADFVIDNN 175 (180)
T ss_dssp HTS--HHHH-----HHH-SEEEE-S
T ss_pred HhCCCHHHH-----HHhCCEEEECC
Confidence 999999999 89999999999
No 52
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.76 E-value=2.7e-18 Score=176.03 Aligned_cols=148 Identities=21% Similarity=0.281 Sum_probs=115.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh-CCeEEecCcccccc----------ccCCCCCCccHHHHHHHHHhhhcCCccccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----------~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~ 132 (899)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. .+++.|+++|++.+.+.|..++.++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 59999999999999999999998 69999999998742 35677999999999999999999876544544
Q ss_pred hhhhhhcc-------------cccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc----
Q 002620 133 DYQQKNRI-------------GSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---- 194 (899)
Q Consensus 133 d~~~~~~~-------------~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r---- 194 (899)
+....... .......++.++||+||.+++. +.+.+.+|++|||+++.+++++|++.|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 44322211 1122334567899999999988 78999999999999999999999999996552
Q ss_pred -c-CHHHHHHhhcHHhhhh
Q 002620 195 -C-SLDSLIDSIFPLFRKH 211 (899)
Q Consensus 195 -~-~~e~~~~~~~p~~~k~ 211 (899)
. .+..+.+.++|+|.++
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 2 3333344568888773
No 53
>PRK06547 hypothetical protein; Provisional
Probab=99.75 E-value=1.7e-17 Score=168.38 Aligned_cols=153 Identities=21% Similarity=0.174 Sum_probs=120.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (899)
.+.+.+|+|+|++||||||+|+.|++.+++.++++|+||.+.. +. +.+...+.+.+.. .|++...| ||+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-------~~-~~~~~~l~~~~l~--~g~~~~~~-yd~ 80 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-------GL-AAASEHVAEAVLD--EGRPGRWR-WDW 80 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-------cC-ChHHHHHHHHHHh--CCCCceec-CCC
Confidence 5689999999999999999999999999999999999997421 11 1134455555544 78888888 999
Q ss_pred cccccCCccceeeccCCcEEEEEeecccchhhhhcCC-----EEEEEEcCchhhHHHHhhcCccccccccchhhHHhhcc
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF 668 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D-----~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~ 668 (899)
..+.+.. +....+.++||+||.+++++.+++.+| ++|||++|.++|+.|++.||.. ...++..+.
T Consensus 81 ~~~~~~~---~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-------~~~~~~~w~ 150 (172)
T PRK06547 81 ANNRPGD---WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-------YAPHWEMWA 150 (172)
T ss_pred CCCCCCC---cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-------hhHHHHHHH
Confidence 9776542 233456789999999999988999999 9999999999999999999954 123556677
Q ss_pred chhhhhccc--ccCcccEEEc
Q 002620 669 PMFQQHIEP--HLVHAHLKIR 687 (899)
Q Consensus 669 p~~~~~I~p--~~~~ADivI~ 687 (899)
+.++.|++. .+..||+++.
T Consensus 151 ~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 151 AQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHhcCCChhccEEEec
Confidence 888888763 4688998864
No 54
>PRK06547 hypothetical protein; Provisional
Probab=99.75 E-value=2.1e-17 Score=167.70 Aligned_cols=153 Identities=22% Similarity=0.228 Sum_probs=122.5
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
...+.+|+|+|++||||||+|+.|++.+++.++++|+||.++.... .+...+...+.. .+++...+ |++..+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~----~~~~~l~~~~l~--~g~~~~~~-yd~~~~~ 84 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLA----AASEHVAEAVLD--EGRPGRWR-WDWANNR 84 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCC----hHHHHHHHHHHh--CCCCceec-CCCCCCC
Confidence 5778999999999999999999999999999999999997644321 133445555544 56666667 8887665
Q ss_pred cccccccccCCCcEEEEEccccchhhhhcCCC-----EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhhhhc-
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI- 212 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D-----~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k~I- 212 (899)
.... ....+.+++|+||.+++...+++.+| ++|||++|.+++++|++.||.. ....+++|.+.++.|+
T Consensus 85 ~~~~--~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~----~~~~~~~w~~~e~~~~~ 158 (172)
T PRK06547 85 PGDW--VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD----YAPHWEMWAAQEERHFA 158 (172)
T ss_pred CCCc--EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch----hhHHHHHHHHHHHHHHh
Confidence 4322 23345579999999999888889999 9999999999999999999943 6677889999999999
Q ss_pred -CCCcCcCcEEEE
Q 002620 213 -EPDLHHAQIRIN 224 (899)
Q Consensus 213 -ep~~~~ADiII~ 224 (899)
.+++.+||+|+.
T Consensus 159 ~~~~~~~ad~~~~ 171 (172)
T PRK06547 159 RYDPRDVADWLGS 171 (172)
T ss_pred cCCChhccEEEec
Confidence 578899999875
No 55
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=4.6e-18 Score=196.10 Aligned_cols=176 Identities=24% Similarity=0.417 Sum_probs=157.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC----------Ccccccccccch--------hhcccccCCCcccccHHHHHH
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKS--------EQVKDFKYDDFSSLDLSLLSK 575 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~----------~~vislDdfy~~--------~~~~~~~~d~p~t~D~~lL~~ 575 (899)
...|++||+.|+++|||||++..+...++ +..+++|.||+. ...+.++|++|+++|.+++..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~ 120 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL 120 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence 35799999999999999999999888776 446788889987 113468999999999999999
Q ss_pred HHHHHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCcccc
Q 002620 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (899)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~r 654 (899)
.++.++.|..+.+|.||+.++.+.+. .+....|++++|+||+++++ ++.++++++++|++++.+.++.||+.||..++
T Consensus 121 ~~~~~~kg~~v~ip~y~~~~~~~~~~-~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 121 TLKNLKKGKAVEIPVYDFVTHSRDEE-KTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHhcccccceeeceeeeeecccCCCC-ceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 99999999999999999999999753 34556788999999999998 78999999999999999999999999999999
Q ss_pred ccccch--hhHHhhccchhhhhcccccCcccEEEcCCC
Q 002620 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 655 g~~~~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
|+.++. .||..++.|.|..||+|.+..||++|+...
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 999986 788889999999999999999999998654
No 56
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.72 E-value=2.1e-17 Score=171.54 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=126.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC-----------C----CCCCccHHHHHHHHHhh---
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------N----DLDSIDFDALVQNLQDL--- 121 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------~----~p~s~d~~~l~~~L~~l--- 121 (899)
..|++|||||++||||||+++.|++.+|+.++++|.+.+.+... + ..+.+|...|.+.++.-
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 34689999999999999999999988999999999986543221 1 13678888888877642
Q ss_pred -hcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhh--hcCCCEEEEEEcCHHHHHHHHHHhccCCccCHH
Q 002620 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARL--RSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLD 198 (899)
Q Consensus 122 -~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l--~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e 198 (899)
..-+.+.||.+.......... ....++++|.+++++... ...||.+|+|+||.+++++|.+.||+..+..+.
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~-----~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~ 158 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKE-----SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAV 158 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-----cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHH
Confidence 233457788777665444322 123589999999999764 578999999999999999999999988777888
Q ss_pred HHHHhhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 199 SLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 199 ~~~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
.+++.|+|..++ ++.||+||+|+.
T Consensus 159 ~ri~~Q~~~eek-----~~~aD~VI~N~g 182 (204)
T PRK14733 159 AFINLQISDKER-----EKIADFVIDNTE 182 (204)
T ss_pred HHHHhCCCHHHH-----HHhCCEEEECcC
Confidence 888999999998 899999999994
No 57
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.71 E-value=2.3e-17 Score=175.77 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=122.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-----------------CCCCccHHHHHHHHHhh---
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL--- 121 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~p~s~d~~~l~~~L~~l--- 121 (899)
|++|||||++||||||+++.|++.+|+++||+|.+.+.+.+.+ ..+.+|+..|.+.++.-
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 5799999999999999999999878999999999866543321 13679999998887643
Q ss_pred -hcCCccccccchhhhhhcccc-------cccccCCCcEEEEEccccchhhh-hcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002620 122 -TEGKDTLIPMFDYQQKNRIGS-------KVIKGASSGVVIVDGTYALDARL-RSLLDIRVAVVGGVHFSLISKVQYDIG 192 (899)
Q Consensus 122 -~~~~~i~~p~~d~~~~~~~~~-------~~~~~~~~~vVIvEG~~l~~~~l-~~~~D~~I~Vda~~~~rl~R~i~RD~~ 192 (899)
..-+.+.||.+.......... .........++|+|.+++++..+ ...||.+|+|++|.+++++|.+.|+..
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~ 160 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGF 160 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 334557778765544333311 00111223599999999999875 468899999999999999999999866
Q ss_pred CccCHHHHHHhhcHHhhhhcCCCcCcCcEEEECC
Q 002620 193 DSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 193 ~r~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
.....+.+++.+++...+ +..||+||+|+
T Consensus 161 s~eea~~Ri~~Q~~~~ek-----~~~aD~VI~N~ 189 (244)
T PTZ00451 161 SKEEALQRIGSQMPLEEK-----RRLADYIIEND 189 (244)
T ss_pred CHHHHHHHHHhCCCHHHH-----HHhCCEEEECC
Confidence 666777777777777666 78999999998
No 58
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.71 E-value=2e-17 Score=169.15 Aligned_cols=154 Identities=20% Similarity=0.240 Sum_probs=120.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC------------C-----CCCCccHHHHHHHHHh----hh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG------------N-----DLDSIDFDALVQNLQD----LT 122 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~------------~-----~p~s~d~~~l~~~L~~----l~ 122 (899)
+|||+|++||||||+++.|++ +|+++|++|.+.+.+... + ..+.+|...|.+.++. +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 599999999999999999998 999999999987643321 1 2357888888887765 23
Q ss_pred cCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002620 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (899)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~ 202 (899)
..+.+.+|.+.......... .+...++|+|++++++..+...||.+|||++|.+++++|.+.||..........++
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~----~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~ 155 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAE----ARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIA 155 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567788877666554432 12236999999999999888999999999999999999999999766556666666
Q ss_pred hhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
.+++...+ +..||+||.|+.
T Consensus 156 ~Q~~~~~~-----~~~aD~vI~N~~ 175 (179)
T cd02022 156 SQMPLEEK-----RARADFVIDNSG 175 (179)
T ss_pred hcCCHHHH-----HHhCCEEEECcC
Confidence 66666544 789999999984
No 59
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.71 E-value=2.7e-17 Score=170.43 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=118.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-----------------CCC-CccHHHHHHHHHhhh--
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLD-SIDFDALVQNLQDLT-- 122 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~p~-s~d~~~l~~~L~~l~-- 122 (899)
.+|||+|++||||||+|+.|++.+|++++|+|.+.+.+...+ ..+ .+|...|.+.++.-.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999999866543221 225 688888877766322
Q ss_pred --cCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002620 123 --EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (899)
Q Consensus 123 --~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~ 200 (899)
.-+.+.||............ .+...++++|.+++++..+...||.+|||+||.+++++|.+.|++.........
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~----~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~r 157 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQ----LKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEAR 157 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHh----cCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 22345666655544433221 223469999999999999999999999999999999999999986555556666
Q ss_pred HHhhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
++.+++...+ +..||+||+|+.
T Consensus 158 i~~Q~~~~~k-----~~~aD~vI~N~g 179 (195)
T PRK14730 158 INAQWPLEEK-----VKLADVVLDNSG 179 (195)
T ss_pred HHhCCCHHHH-----HhhCCEEEECCC
Confidence 6666776555 789999999994
No 60
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.2e-17 Score=165.78 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=133.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCC-----------------CCccHHHHHHHHHhhhc-
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL-----------------DSIDFDALVQNLQDLTE- 123 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p-----------------~s~d~~~l~~~L~~l~~- 123 (899)
|++||+||++||||||+++.|. .+|+++||+|.+.+.+..++.| +.+|++.|-+.++.-..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 6899999999999999999997 6999999999998876665443 56788877777664322
Q ss_pred ---CCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002620 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (899)
Q Consensus 124 ---~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~ 200 (899)
.+.+.+|.+.++....... .-..+.+++|+|.+++|+..+.+++-.+|.|.||.+++++|.+.||...+.+++.+
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~--~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R 157 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILK--LLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENR 157 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--HHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH
Confidence 3457888887776665533 22456789999999999999999999999999999999999999997777888999
Q ss_pred HHhhcHHhhhhcCCCcCcCcEEEECCCC
Q 002620 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (899)
++.|+|..++ .+.||+||+||+.
T Consensus 158 l~sQmp~~~k-----~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 158 LQSQMPLEKK-----CELADVVIDNNGS 180 (225)
T ss_pred HHhcCCHHHH-----HHhhheeecCCCC
Confidence 9999999999 8999999999964
No 61
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.69 E-value=5.7e-17 Score=167.92 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=120.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-----------------CCCCccHHHHHHHHHh----
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD---- 120 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~p~s~d~~~l~~~L~~---- 120 (899)
|.+|||+|++||||||+++.|++ +|+.+|++|.+.+.+...+ ..+.+|...|.+.++.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 57899999999999999999998 9999999999866433211 1357888888887763
Q ss_pred hhcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002620 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (899)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~ 200 (899)
+...+.+.||.+.......... .....++|+|++++++..+...||.+|+|++|.+++++|.+.|+.........+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~----~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r 156 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQE----AESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2223456777766555444321 122369999999999999999999999999999999999999986555556666
Q ss_pred HHhhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
++.+++...+ ...||+||+|+.
T Consensus 157 i~~Q~~~~~~-----~~~ad~vI~N~g 178 (194)
T PRK00081 157 IASQMPREEK-----LARADDVIDNNG 178 (194)
T ss_pred HHHhCCHHHH-----HHhCCEEEECCC
Confidence 6667776665 688999999984
No 62
>PLN02422 dephospho-CoA kinase
Probab=99.67 E-value=1.2e-16 Score=168.73 Aligned_cols=158 Identities=18% Similarity=0.105 Sum_probs=122.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC-----------------CCCCCccHHHHHHHHHhh---
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQDL--- 121 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~p~s~d~~~l~~~L~~l--- 121 (899)
|.+|||||++||||||+++.|++ +|+.+||+|.+.+.+... ...+.+|...|.+.++.-
T Consensus 1 M~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 45899999999999999999984 899999999986643221 124678999888887643
Q ss_pred -hcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002620 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (899)
Q Consensus 122 -~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~ 200 (899)
..-+.+.||.+............ .....++++|.+++++..+...||.+|+|++|.+++++|.+.|++........+
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~~--~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R 157 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKLW--LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNR 157 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH--hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 23345777876554443322111 122469999999999999999999999999999999999999986665666667
Q ss_pred HHhhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
++.+++...+ .+.||+||+|+.
T Consensus 158 i~~Q~~~eek-----~~~AD~VI~N~g 179 (232)
T PLN02422 158 INAQMPLDWK-----RSKADIVIDNSG 179 (232)
T ss_pred HHHcCChhHH-----HhhCCEEEECCC
Confidence 7788888776 789999999994
No 63
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.66 E-value=2.8e-16 Score=163.47 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=120.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC-----------------CCCCCccHHHHHHHHHhh---
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQDL--- 121 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~p~s~d~~~l~~~L~~l--- 121 (899)
|++|||+|++||||||+++.|+. +|+++|++|.+.+.+... ...+.+|+..|.+.++.-
T Consensus 1 m~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 46899999999999999999987 899999999875533221 123678888888876632
Q ss_pred -hcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002620 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (899)
Q Consensus 122 -~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~ 200 (899)
..-+.+.||.+........... ......++++|.+++++..+...||.+|||++|.+++++|.+.|++.........
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~~~--~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r 157 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFNEA--RAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR 157 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHH--HhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2234567777655544332111 1123469999999999999999999999999999999999999976555566677
Q ss_pred HHhhcHHhhhhcCCCcCcCcEEEECCCC
Q 002620 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (899)
++.+++.+.+ +..||+||+|+..
T Consensus 158 i~~Q~~~~~k-----~~~ad~vI~N~g~ 180 (200)
T PRK14734 158 IAAQIPDDVR-----LKAADIVVDNNGT 180 (200)
T ss_pred HHhcCCHHHH-----HHhCCEEEECcCC
Confidence 7778888776 6899999999843
No 64
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.63 E-value=3.7e-16 Score=161.95 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=118.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-----------------CCCCccHHHHHHHHHhh----h
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL----T 122 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~p~s~d~~~l~~~L~~l----~ 122 (899)
+|||+|++||||||+++.|++ +|+.++++|.+.+.+.+.+ ..+.+|...|.+.++.- .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 7999999999866433221 23678888888877642 2
Q ss_pred cCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002620 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (899)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~ 202 (899)
.-+.+.||.+.......... .....++|+|.+++++..+...||.+|||++|.+++++|.+.|++.....+..+++
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~----~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~ 155 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQT----TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA 155 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHH----HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23457778776655443321 11235899999999999999999999999999999999999998665555666666
Q ss_pred hhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
.+++...+ +..||+||.|+.
T Consensus 156 ~Q~~~~~k-----~~~aD~vI~N~~ 175 (196)
T PRK14732 156 SQLPITEK-----LKRADYIVRNDG 175 (196)
T ss_pred HcCCHHHH-----HHhCCEEEECCC
Confidence 66665555 789999999994
No 65
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.63 E-value=1.6e-15 Score=153.59 Aligned_cols=130 Identities=22% Similarity=0.371 Sum_probs=119.2
Q ss_pred ccccccccccCCCCCCCCCcCCCc-eEEEEeeC--CEEEEEEeccccccCcccccceeEEe--hhhHHHHHHHcCceeee
Q 002620 727 AQNFIDMYLRLPGIPTNGQLTESD-CIRVRICE--GRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVA 801 (899)
Q Consensus 727 v~~y~d~Y~~~~~l~~~~~~~~~~-~irir~~~--~~~~l~~~~~~~d~~~~~~~~~~~~v--~~~~~~~l~~lg~~~~~ 801 (899)
.....|+||..| +++++..+ |||||..+ +++.+|||+|..++.+++|++.+++| ...|.++|.+|||+...
T Consensus 28 ~~~q~d~Yfd~p----~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~~~iL~~lg~~~~~ 103 (169)
T cd07890 28 REFQEDIYFDHP----DRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAMKEILERLGFGPVG 103 (169)
T ss_pred ceeEeEEEEcCC----chhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHHHHHHHHcCCceeE
Confidence 446679999999 77777655 99999988 99999999999999899999999999 67899999999999999
Q ss_pred eeeeeeEEeecCcEEEEEecccCCCCceEEEecc------cHHHHHHHHhhCCCCC-CccchhHHHH
Q 002620 802 YIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGV------DKEAVAAAGSTLKLDG-SYTTKSYLQI 861 (899)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~-~~~~~syle~ 861 (899)
.++|.|..|..+++.|++|++++|| +|+||.+. +++.+..++++||+.+ .-+++||+|+
T Consensus 104 ~~~K~R~~~~~~~~~v~lD~~~~lG-~f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 104 RVKKEREIYLLGQTRVHLDRVEGLG-DFVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred EEEEEEEEEEECCEEEEEEccCCCC-ceEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 9999999999999999999999999 79999887 9999999999999965 6789999974
No 66
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.62 E-value=4e-16 Score=161.55 Aligned_cols=156 Identities=22% Similarity=0.242 Sum_probs=118.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-----------------CCCCccHHHHHHHHHhh---
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDL--- 121 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~p~s~d~~~l~~~L~~l--- 121 (899)
|.+|||||++||||||+|+.|++ +|++||++|.+.+.+...+ .-+.+|...|.+.++.-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 68999999999999999999999 9999999999877433221 12346666666655421
Q ss_pred -hcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002620 122 -TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (899)
Q Consensus 122 -~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~ 200 (899)
...+.+.+|....... ... ......++++|.+++++......||.+|.|+||+++|++|.++|+..+....+..
T Consensus 81 ~~~Le~i~hPli~~~~~-~~~----~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~ 155 (201)
T COG0237 81 RLKLEKILHPLIRAEIK-VVI----DGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEAR 155 (201)
T ss_pred HHHHHHhhhHHHHHHHH-HHH----HHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 2223455666554443 111 1112239999999999987777799999999999999999999996666678888
Q ss_pred HHhhcHHhhhhcCCCcCcCcEEEECCCC
Q 002620 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (899)
+..+.+..++ ...||+|++|+..
T Consensus 156 ~~~Q~~~~ek-----~~~ad~vi~n~~~ 178 (201)
T COG0237 156 LASQRDLEEK-----LALADVVIDNDGS 178 (201)
T ss_pred HHhcCCHHHH-----HhhcCChhhcCCC
Confidence 8888998888 7899999999953
No 67
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.62 E-value=1.5e-15 Score=159.13 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=115.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-------------------CCC--CccHHHHHHHH
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-------------------DLD--SIDFDALVQNL 118 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-------------------~p~--s~d~~~l~~~L 118 (899)
+.+++|||||++||||||+++.|++ +|+.++++|.+.+.+...+ ..+ .+|...+.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3468999999999999999999987 8999999998755432211 112 27777777665
Q ss_pred Hhh----hcCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc
Q 002620 119 QDL----TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (899)
Q Consensus 119 ~~l----~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r 194 (899)
+.- ..-+.+.||.+.......... .......++++|++++++..+...||.+|+|++|.+++++|.+.|+....
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~--~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~ 159 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDR--AARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSR 159 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHH--HHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence 532 223446677665544333321 11123469999999999988888999999999999999999999986544
Q ss_pred cCHHHHHHhhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 195 CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 195 ~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
.....+++.+.+...+ .+.||++|+|+.
T Consensus 160 e~~~~Ri~~q~~~~~~-----~~~ad~vI~N~g 187 (208)
T PRK14731 160 EEIRRRIAAQWPQEKL-----IERADYVIYNNG 187 (208)
T ss_pred HHHHHHHHHcCChHHH-----HHhCCEEEECCC
Confidence 5556666666666555 467999999984
No 68
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.61 E-value=1.8e-15 Score=172.66 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=114.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC-----------------CCCCCccHHHHHHHHHhhhc-
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQDLTE- 123 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~p~s~d~~~l~~~L~~l~~- 123 (899)
|.+|||||++||||||+|+.|++ +|+++||+|.+.+.+... +..+.+|...|.+.++.-..
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 46799999999999999999987 899999999986643221 12367899888887764222
Q ss_pred ---CCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHH
Q 002620 124 ---GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (899)
Q Consensus 124 ---~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~ 200 (899)
.+.+.+|.+......... ..+...++++|.+++++..+...||.+|||++|.+.+++|.+.|+..........
T Consensus 80 ~~~le~i~hP~I~~~i~~~i~----~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~r 155 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELIA----AAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARAR 155 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHHH----hcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 234566665543332221 1233457777888899988999999999999999999999988665444344444
Q ss_pred HHhhcHHhhhhcCCCcCcCcEEEECCCC
Q 002620 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 201 ~~~~~p~~~k~Iep~~~~ADiII~N~~~ 228 (899)
+..+.+...+ ...||++|+|+..
T Consensus 156 i~~Q~~~e~k-----~~~AD~vIdN~~s 178 (395)
T PRK03333 156 IAAQASDEQR-----RAVADVWLDNSGT 178 (395)
T ss_pred HHhcCChHHH-----HHhCCEEEECCCC
Confidence 5555555555 7899999999853
No 69
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.56 E-value=7.3e-15 Score=151.25 Aligned_cols=156 Identities=22% Similarity=0.210 Sum_probs=117.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC-----------------CCCCccHHHHHHHHHhhh----
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQDLT---- 122 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~p~s~d~~~l~~~L~~l~---- 122 (899)
+|||+|++||||||+++.|++..|+.++++|.+.+.+...+ ..+.+|...|.+.++.-.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999866699999999866433221 235678888877765322
Q ss_pred cCCccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002620 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (899)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~ 202 (899)
.-+.+.+|.+........... .....++|++.+++++..+...||.+|+|+++.++++.|.+.|++........+++
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~---~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~ 157 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQF---QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLA 157 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHh---hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 224566777666554443221 11225899999999988888999999999999999999999999555556666666
Q ss_pred hhcHHhhhhcCCCcCcCcEEEECCC
Q 002620 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~ 227 (899)
.+.+.+.+ +..||++|+|+.
T Consensus 158 ~q~~~~~~-----~~~ad~vI~N~~ 177 (188)
T TIGR00152 158 SQMDIEER-----LARADDVIDNSA 177 (188)
T ss_pred hcCCHHHH-----HHhCCEEEECCC
Confidence 67766655 789999999983
No 70
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.54 E-value=3.4e-14 Score=145.29 Aligned_cols=119 Identities=14% Similarity=-0.008 Sum_probs=105.5
Q ss_pred cccccccceeccccCCCCcccccccCCceeEeeeCCEEEEEEcceeecCCCccccceeEEEEeh----------------
Q 002620 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 318 (899)
Q Consensus 255 ~~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v---------------- 318 (899)
....|++.||+.|+++++.++.|+ |||..++++.+|||||.. +.|.|+|+.+
T Consensus 25 ~~~~q~n~Yfdtp~~~l~~~~~aL-----RiR~~~~~~~~TlK~~~~-------~~r~E~e~~l~~~~~~~~~~~~~~~~ 92 (180)
T cd07762 25 DFFKQTNYYFDTPDFALKKKHSAL-----RIREKEGKAELTLKVPQE-------VGLLETNQPLTLEEAEKLIKGGTLPE 92 (180)
T ss_pred CcEEEEEEEEeCCCHHHHhCCcEE-----EEEeeCCeEEEEEeeCCC-------CCCcEEeecCCHHHHHHHhccccCCc
Confidence 446789999999999999999999 999999999999998873 4799999988
Q ss_pred -hHHHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--C----HHHHHHHHHHcCCCCCc
Q 002620 319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N----RKTVGAEALRMGINGPW 385 (899)
Q Consensus 319 -~~~~~L~~LGf~~-----~~~v~K~R~~~~~~~~~v~lD~v~~lG~~fvEiE~~--~----~~~v~~~~~~Lgl~~~~ 385 (899)
.+..+|.+|||.+ ++.++|.|..|.+++..+|||++.++|..++|||.. + .+.+.++++.||+....
T Consensus 93 ~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 93 GEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred hHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 3778999999986 999999999999999999999999999933999986 3 26789999999998754
No 71
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.54 E-value=2.4e-14 Score=146.70 Aligned_cols=139 Identities=22% Similarity=0.313 Sum_probs=108.8
Q ss_pred cccccccccccccceeccccCCCCcccccccCCceeEeee-CCEEEEEEcceeecCCC----ccccceeEEEEeh----h
Q 002620 249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS-GIRYYLSIGDQRIVDKN----FIIRPKAEFEVGR----M 319 (899)
Q Consensus 249 ~ga~f~~~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~-~~~~~ltyKg~~~~~~~----~~~k~r~E~ev~v----~ 319 (899)
.++.+.....+.|.||+.|.+++...+.+ ||||.. +++..+|||+|..++.. +.+ .|.|+|..+ .
T Consensus 25 ~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~-----lRiR~~~~~~~~lTlK~~~~~~~~~e~~~~~-~r~e~e~~i~~~~~ 98 (185)
T PF01928_consen 25 LGAEFPKEEHQTDTYFDTPDRDLRKAGIA-----LRIRRENGDGWYLTLKGPGSDGPREEIEFEV-SREEYEAPISDAEE 98 (185)
T ss_dssp CTEEEEEEEEEEEEEEEETTTHHHHTTSE-----EEEEEETTTEEEEEEEEESSSSSEEEEEEEE-SHHCCEEEHSHHHH
T ss_pred hccccCeEEEEEEEEEeCCChhHHhCCcE-----EEEEeecCCccEEEEEccCccCcccccceee-cchhhhccccchHH
Confidence 44566777889999999998888765554 599976 77777999988765430 000 134444433 6
Q ss_pred HHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCC-CCCeEEEEec--CHHH-------HHHHHHHcCCCCCc-cch
Q 002620 320 TLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL-DETFMVLRGT--NRKT-------VGAEALRMGINGPW-ITK 388 (899)
Q Consensus 320 ~~~~L~~LGf~~~~~v~K~R~~~~~~~~~v~lD~v~~l-G~~fvEiE~~--~~~~-------v~~~~~~Lgl~~~~-~~~ 388 (899)
+..+|..+||.+.+.++|.|+.|.++++.|+||+++++ |. |+|||.. +.+. +.+.+..||+.... +++
T Consensus 99 ~~~~l~~l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~-~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r 177 (185)
T PF01928_consen 99 MREILEALGLRPVARIEKKRRSYRLEGVEVELDEVDGLPGT-FLEIEIESEDEEDLKEAAEEILALLNELGISENSKIER 177 (185)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTTEE-EEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHS
T ss_pred HHHHHHHhcCceeEEEEEEEEEEEECCEEEEEEEEecceEE-EEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHH
Confidence 89999999999999999999999999999999999999 87 9999998 3333 44555669998755 999
Q ss_pred hHHHHH
Q 002620 389 SYLEMV 394 (899)
Q Consensus 389 sYlel~ 394 (899)
+|++|+
T Consensus 178 ~y~~l~ 183 (185)
T PF01928_consen 178 SYLELL 183 (185)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 999986
No 72
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.52 E-value=6.1e-14 Score=145.29 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=103.7
Q ss_pred ccccccccccceeccccCCCCcccccccCCceeEeeeCCEEEEEEcceee---cCCCccccceeEEEEeh---h------
Q 002620 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRI---VDKNFIIRPKAEFEVGR---M------ 319 (899)
Q Consensus 252 ~f~~~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~~~~~~ltyKg~~~---~~~~~~~k~r~E~ev~v---~------ 319 (899)
.......++|.||+.|+++++.+++++ |+|.. ..+|+||++.. +... +.++|++..+ .
T Consensus 25 ~~~~~~~~~d~YfDtp~~~l~~~~~~L-----RiR~~--~~~lk~~~~~~~~~~~~~---~~~~E~~~~~~~~~~v~~~~ 94 (196)
T cd07758 25 ELLGRRTFHDTYYDTPDNTLSLNDVWL-----RQRNG--QWELKIPPGGDPPTAGAN---TRYEELTGEAAIAAALRKLL 94 (196)
T ss_pred CCCceEEEeeEEEeCCChhHHhCCcEE-----EEECC--eEEEEecCCCCCCCCCCc---ceEEecccHHHHHHHHHHhc
Confidence 556778899999999999999999988 99963 67788886654 2334 8999998888 1
Q ss_pred ---------HHHHHHhcCCceeEEEEEEEEEEEeC-CEEEEEeccCCCCCCeEEEEec--C---H-------HHHHHHHH
Q 002620 320 ---------TLGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N---R-------KTVGAEAL 377 (899)
Q Consensus 320 ---------~~~~L~~LGf~~~~~v~K~R~~~~~~-~~~v~lD~v~~lG~~fvEiE~~--~---~-------~~v~~~~~ 377 (899)
|..+|..|||.+.++++|.|++|.++ +++||||+++ +|..|+|||.+ + + +.+.++++
T Consensus 95 ~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~ 173 (196)
T cd07758 95 GGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELIS 173 (196)
T ss_pred CCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHH
Confidence 34799999999999999999999999 9999999999 77769999986 4 2 66899999
Q ss_pred HcCCCCCc
Q 002620 378 RMGINGPW 385 (899)
Q Consensus 378 ~Lgl~~~~ 385 (899)
+||+...+
T Consensus 174 ~lg~~~~~ 181 (196)
T cd07758 174 ALMERYLW 181 (196)
T ss_pred HhCCCccc
Confidence 99998743
No 73
>PRK08233 hypothetical protein; Provisional
Probab=99.50 E-value=1.2e-13 Score=140.49 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=109.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-Ccccccccccchhhc---ccc--cCCCcccccHHHHHHHHHHHhcCCceecc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKSEQV---KDF--KYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~-~~vislDdfy~~~~~---~~~--~~d~p~t~D~~lL~~~L~~L~~g~~v~~P 589 (899)
++++|+|+|++||||||+|+.|+..++ +.++++|+|+.+... ... .......++++.+.+.+..+.++.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 76 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS----- 76 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC-----
Confidence 368999999999999999999999996 678899999864211 100 011224567777777666654321
Q ss_pred cccccccccCCccceeeccCCcEEEEEeeccc-chhhhhcCCEEEEEEcCchhhHHHHhhcCcccccc-ccc--hhhHHh
Q 002620 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-FMS--QNDIMM 665 (899)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~-~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~-~~~--~~q~~~ 665 (899)
..++||+||.+.. .+.+.+.+|+.||+++|.++++.|++.|+...... ... ...|..
T Consensus 77 -------------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 137 (182)
T PRK08233 77 -------------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN 137 (182)
T ss_pred -------------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 1368999998775 47888999999999999999999999987543211 121 145666
Q ss_pred hccchhhhhcccccCcccEEEcCC
Q 002620 666 TVFPMFQQHIEPHLVHAHLKIRND 689 (899)
Q Consensus 666 ~v~p~~~~~I~p~~~~ADivI~n~ 689 (899)
.++|.|.+++++....|+++|++.
T Consensus 138 ~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 138 YARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHHHhhcCccCCeEEEcCC
Confidence 788999998888777899998764
No 74
>PRK08233 hypothetical protein; Provisional
Probab=99.47 E-value=4.3e-13 Score=136.49 Aligned_cols=142 Identities=18% Similarity=0.356 Sum_probs=100.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-CeEEecCcccccccc---------CCCCCCccHHHHHHHHHhhhcCCcccccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG-CTLISMENYRVGVDE---------GNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-~~vI~~D~~~~~~~~---------~~~p~s~d~~~l~~~L~~l~~~~~i~~p~ 131 (899)
..+|+|+|++||||||+|+.|++.++ +.+++.|.++..... +...+.++.+.+.+.+..+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 57999999999999999999999996 678888888643211 1112233444444444333221
Q ss_pred chhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc--cC----HHHHHHhh
Q 002620 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CS----LDSLIDSI 204 (899)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r--~~----~e~~~~~~ 204 (899)
...++||+||++... +.+...+|++|||++|.++++.|++.|+.... .. ...+....
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 113588999987654 67888899999999999999999998875322 12 23334455
Q ss_pred cHHhhhhcCCCcCcCcEEEECC
Q 002620 205 FPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 205 ~p~~~k~Iep~~~~ADiII~N~ 226 (899)
.|.|.+++.+.+..|+++|+++
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcCC
Confidence 7888888877777899999876
No 75
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.46 E-value=7.9e-14 Score=140.42 Aligned_cols=158 Identities=20% Similarity=0.297 Sum_probs=113.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhc------ccccCCCcccccHHHHHHHHHHHhcCCceec
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKV 588 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~~~~~------~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~ 588 (899)
+.+||||+|.+.|||||||+.|+..| |+.+||.||||++.+. +-.+|+.+.++|++++.+.+.....+... .
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~-~ 81 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHN-A 81 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccc-c
Confidence 46899999999999999999999999 5889999999999543 13468899999999999988776655321 1
Q ss_pred ccccccccccCCc-----cceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccchhh
Q 002620 589 PIFDLETGARSGF-----KELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQND 662 (899)
Q Consensus 589 P~yD~~~~~r~~~-----~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~q 662 (899)
|.+-...=++..+ .-........+||+||.+++. +.+.+.+|..|++.+|.+++..||-.|- ++.+...-
T Consensus 82 ~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt----~y~p~~tg 157 (225)
T KOG3308|consen 82 PEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREART----YYPPDDTG 157 (225)
T ss_pred chHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccc----cCCCCCCc
Confidence 1111110011000 001112346899999999985 8889999999999999999988876553 44444333
Q ss_pred HHh-hccchhhhhcccc
Q 002620 663 IMM-TVFPMFQQHIEPH 678 (899)
Q Consensus 663 ~~~-~v~p~~~~~I~p~ 678 (899)
|.. .+||+|.++.+..
T Consensus 158 yfd~~~~P~Y~~~~~~~ 174 (225)
T KOG3308|consen 158 YFDPVVWPHYEKNFEEA 174 (225)
T ss_pred cccCccchHHHHHHHHH
Confidence 444 4889888876543
No 76
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.45 E-value=1.9e-13 Score=139.60 Aligned_cols=162 Identities=14% Similarity=0.209 Sum_probs=130.9
Q ss_pred CccccccccHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-------------CeEEecCccccc---
Q 002620 36 PVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------------CTLISMENYRVG--- 99 (899)
Q Consensus 36 ~~~is~d~~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-------------~~vI~~D~~~~~--- 99 (899)
++..+.|+.|...++++. .+....+|++|++|+||||++..+++... +.++.||+|+..
T Consensus 98 ~D~s~~de~y~~~~e~L~-----~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~ 172 (323)
T KOG2702|consen 98 KDHSEDDEFYPVKYEALT-----SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRC 172 (323)
T ss_pred cCcchhhhhhHHHHHHhc-----ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHH
Confidence 444456667777766655 45567899999999999999999987542 356899998542
Q ss_pred ----------cccCCCCCCccHHHHHHHHHhhhc--CCccccccchhhhhhcccccccccCCCcEEEEEccccch-----
Q 002620 100 ----------VDEGNDLDSIDFDALVQNLQDLTE--GKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----- 162 (899)
Q Consensus 100 ----------~~~~~~p~s~d~~~l~~~L~~l~~--~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----- 162 (899)
...++.|-+||-+.+...+..+++ ..+++.|.|++..++.+.......+..++||+||.|++.
T Consensus 173 LD~f~dP~~AharRGapwTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~W 252 (323)
T KOG2702|consen 173 LDLFKDPQTAHARRGAPWTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENW 252 (323)
T ss_pred HHhhcChHHHHhhcCCCcccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccH
Confidence 234678899999999988887774 467999999999999999888888899999999999985
Q ss_pred hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHH
Q 002620 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLID 202 (899)
Q Consensus 163 ~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r--~~~e~~~~ 202 (899)
..+.+.+|.++|++++.+...+|...|....+ ...++...
T Consensus 253 kdi~k~~d~k~~idV~~~~a~~RVa~RHl~sGl~~t~~ea~e 294 (323)
T KOG2702|consen 253 KDIYKTLDDKYKIDVDYEAAEERVAKRHLQSGLVTTIAEARE 294 (323)
T ss_pred HHHHHHhhhheeccccHHHHHHHHHHHhhcccccCCHHHHHh
Confidence 47778899999999999999999999988777 34544443
No 77
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.43 E-value=3.2e-13 Score=136.12 Aligned_cols=171 Identities=20% Similarity=0.288 Sum_probs=120.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecCccccc----------cccCCCCCCccHHHHHHHHHhhhcCCccc-
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTL- 128 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~----------~~~~~~p~s~d~~~l~~~L~~l~~~~~i~- 128 (899)
+.+||||.|.+.|||||||+.|+..| |+.+||.|+||+. ..+++.++++|++++.+.+.....++...
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 45899999999999999999999988 5899999999884 33456789999999999887766553311
Q ss_pred --------cccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHH
Q 002620 129 --------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (899)
Q Consensus 129 --------~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~ 199 (899)
...+.+..... ........+||+||.+++. +.+.+.||.+|++.++.+++.+||-.|-..-..+. .
T Consensus 83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~t-g 157 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPPDDT-G 157 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCCCCC-c
Confidence 11111111111 1122345689999999998 78889999999999999999998887764332222 2
Q ss_pred HHH-hhcHHhhhhcCCCcCcC--cEEEECCCCCchhhhhh
Q 002620 200 LID-SIFPLFRKHIEPDLHHA--QIRINNRFVSSFREAIY 236 (899)
Q Consensus 200 ~~~-~~~p~~~k~Iep~~~~A--DiII~N~~~~~~~~~~~ 236 (899)
+.+ ..+|.|.++.+..+.++ |....|.-.++-.-|..
T Consensus 158 yfd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs~e~~~~~ 197 (225)
T KOG3308|consen 158 YFDPVVWPHYEKNFEEARDRSRHDSLFLNGDVSEEKLDDK 197 (225)
T ss_pred cccCccchHHHHHHHHHHhhcccceeeecccchhhhchhh
Confidence 333 36789998886555444 77777764444333433
No 78
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.41 E-value=1.2e-13 Score=141.20 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=109.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhc---------cc-c---cCCCcccccHHHHHHHHHH----Hh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------KD-F---KYDDFSSLDLSLLSKNISD----IR 581 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~---------~~-~---~~d~p~t~D~~lL~~~L~~----L~ 581 (899)
+|||+|++||||||+++.|++ +|+.++++|.+.+..-. .. + .+...+.+|...|.+.+-. ++
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999999 89999999999876210 11 1 1123467888877775532 33
Q ss_pred cCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccchh
Q 002620 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN 661 (899)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~ 661 (899)
.-+.+.+|.+......... ......++|+|+.+++...+...+|..|+|++|.+.++.|.+.||....... .
T Consensus 80 ~l~~i~hp~i~~~~~~~~~-----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~---~ 151 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLA-----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEA---E 151 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHH---H
Confidence 3456777776555433221 0112369999999999988889999999999999999999999984322111 1
Q ss_pred hHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 662 q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
+.+....+. ++....||++|+|+.+
T Consensus 152 ~r~~~Q~~~-----~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 152 ARIASQMPL-----EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHhcCCH-----HHHHHhCCEEEECcCC
Confidence 122222221 2345789999999754
No 79
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.39 E-value=2e-12 Score=144.91 Aligned_cols=169 Identities=18% Similarity=0.245 Sum_probs=118.3
Q ss_pred cHHHHHHH----HHHHHhcC-----CCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCccccccc--------
Q 002620 44 GYYLLVKS----IQELREKK-----GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD-------- 101 (899)
Q Consensus 44 ~y~~l~~~----i~~~~~~~-----~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~-------- 101 (899)
-|.++... |..++.+. .+|++|||+|++|||||||++.|...+. +.+|+.|+||....
T Consensus 185 ~ylPl~~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~ 264 (460)
T PLN03046 185 YYIPVFIWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhh
Confidence 55566553 55555422 2689999999999999999999988762 67899999986211
Q ss_pred --------cCCCCCCccHHHHHHHHHhh----hcCCccccccchhhhhh----ccccc--ccccCCCcEEEEEccccchh
Q 002620 102 --------EGNDLDSIDFDALVQNLQDL----TEGKDTLIPMFDYQQKN----RIGSK--VIKGASSGVVIVDGTYALDA 163 (899)
Q Consensus 102 --------~~~~p~s~d~~~l~~~L~~l----~~~~~i~~p~~d~~~~~----~~~~~--~~~~~~~~vVIvEG~~l~~~ 163 (899)
.++.|+++|...+.+.|..+ +.++.+.+|.||+..+. |.... .....+.+|||+||++++..
T Consensus 265 nP~n~LL~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~ 344 (460)
T PLN03046 265 NPGNALLELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFK 344 (460)
T ss_pred CccchhhcccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCC
Confidence 12457899998888887776 56788999999999865 43221 22345679999999887651
Q ss_pred --------------------------hhhcCCCEEEEEEcC-HHHHHHHHHHhccCC------c---cCHHHHHHhhcHH
Q 002620 164 --------------------------RLRSLLDIRVAVVGG-VHFSLISKVQYDIGD------S---CSLDSLIDSIFPL 207 (899)
Q Consensus 164 --------------------------~l~~~~D~~I~Vda~-~~~rl~R~i~RD~~~------r---~~~e~~~~~~~p~ 207 (899)
.+...+|.-|.+.++ .+.-.+||.+.+..- . ....++++.++|.
T Consensus 345 P~~~~~l~~~D~~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPa 424 (460)
T PLN03046 345 PLPNEVVKAVDPQLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPA 424 (460)
T ss_pred CCChHHhhccChhHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhH
Confidence 111245676777776 466777776655422 1 2456677788998
Q ss_pred hhhhc
Q 002620 208 FRKHI 212 (899)
Q Consensus 208 ~~k~I 212 (899)
|+.|.
T Consensus 425 Y~~y~ 429 (460)
T PLN03046 425 YKAYL 429 (460)
T ss_pred HHHHH
Confidence 88876
No 80
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.36 E-value=1.6e-12 Score=127.12 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=106.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
+|.|.|++||||||+|+.||+.+|.+++++..+++++...-+.+-.++..+.+ ..|.+|..+..+....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE-----------~~p~iD~~iD~rq~e~ 70 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAE-----------EDPEIDKEIDRRQKEL 70 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHh-----------cCchhhHHHHHHHHHH
Confidence 69999999999999999999999999999999999776544444333333222 3577787777766432
Q ss_pred ccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCH-HHHH---HhhcHHhhhhc--C-CCc
Q 002620 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSL-DSLI---DSIFPLFRKHI--E-PDL 216 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~-e~~~---~~~~p~~~k~I--e-p~~ 216 (899)
. ..+-+|+||-++.+-.- ...|++||+.||.++|.+|...|++..-... .... ......|.++. . .+.
T Consensus 71 a----~~~nvVlegrLA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDl 145 (179)
T COG1102 71 A----KEGNVVLEGRLAGWIVR-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDL 145 (179)
T ss_pred H----HcCCeEEhhhhHHHHhc-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 1 24578999999876322 6899999999999999999999996543211 1111 11233344433 2 346
Q ss_pred CcCcEEEECCCCC
Q 002620 217 HHAQIRINNRFVS 229 (899)
Q Consensus 217 ~~ADiII~N~~~~ 229 (899)
.-.|+||+.++.+
T Consensus 146 SiyDLVinTs~~~ 158 (179)
T COG1102 146 SIYDLVINTSKWD 158 (179)
T ss_pred eeeEEEEecccCC
Confidence 7789999988654
No 81
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.35 E-value=5e-13 Score=136.64 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=102.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----hh-----c----ccccCCCcccccHHHHHHHH----HHH
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNI----SDI 580 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~----~~-----~----~~~~~d~p~t~D~~lL~~~L----~~L 580 (899)
++|||+|+.||||||+++.|++ +|+.++++|...+. .. . +..-++.-+++|...|.+.+ ..+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999999 99999999988664 11 0 11112344778888887755 223
Q ss_pred hcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch
Q 002620 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (899)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~ 660 (899)
+.-+.+.+|........+. ......+++++|..+++...+...||..|+|++|.++++.|.+.||.......
T Consensus 80 ~~L~~iihP~I~~~~~~~~-----~~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~--- 151 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFI-----KRNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEA--- 151 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHH---
T ss_pred HHHHHHHhHHHHHHHHHHH-----HhccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHH---
Confidence 3334455665444333222 11112279999999999999999999999999999999999999974332221
Q ss_pred hhHHhhccchhhhhcccccCcccEEEcCCC
Q 002620 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 661 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
.+......|..++ +..||+||+|+.
T Consensus 152 ~~ri~~Q~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 152 EARIASQMPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HHHHHTS--HHHH-----HHH-SEEEE-SS
T ss_pred HHHHHhCCCHHHH-----HHhCCEEEECCC
Confidence 2333344444443 467999999975
No 82
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.33 E-value=1.7e-12 Score=134.56 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=106.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh-----c--------ccccCCCcc-cccHHHHHHHHH----H
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-----V--------KDFKYDDFS-SLDLSLLSKNIS----D 579 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~-----~--------~~~~~d~p~-t~D~~lL~~~L~----~ 579 (899)
.+|||+|++||||||+|+.|++.+|+.++++|++.+.-- . +..-+...+ ++|...|.+.+- .
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 379999999999999999999988999999999876511 0 111122346 678777766542 1
Q ss_pred HhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccc
Q 002620 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (899)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~ 659 (899)
++.-+.+.+|..-.....+. .......++++|-.+++...+...+|..|+|++|.++++.|.+.|+.. +.+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~-----~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~----s~e 152 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEEL-----AQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGL----TEE 152 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHH-----HhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCC----CHH
Confidence 12222344554322221111 111123699999999999899999999999999999999999999732 222
Q ss_pred h-hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 660 ~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
. .+......+ +++.+..||++|+|+.+
T Consensus 153 ~~~~ri~~Q~~-----~~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 153 EAEARINAQWP-----LEEKVKLADVVLDNSGD 180 (195)
T ss_pred HHHHHHHhCCC-----HHHHHhhCCEEEECCCC
Confidence 1 122222222 23446789999999753
No 83
>PLN02796 D-glycerate 3-kinase
Probab=99.33 E-value=1.2e-11 Score=137.06 Aligned_cols=165 Identities=18% Similarity=0.273 Sum_probs=116.1
Q ss_pred HHHHHHHHHh-----cCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCccccccc----------------
Q 002620 48 LVKSIQELRE-----KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD---------------- 101 (899)
Q Consensus 48 l~~~i~~~~~-----~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~---------------- 101 (899)
+++.+..+.. ...++++|||+|++||||||+++.|+..+. +..|++|+||....
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~ 160 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLE 160 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhh
Confidence 4445555542 124689999999999999999999998874 56799999975311
Q ss_pred cCCCCCCccHHHHHHHHHhhh----cCCccccccchhhhhhccccc------ccccCCCcEEEEEccccchh--------
Q 002620 102 EGNDLDSIDFDALVQNLQDLT----EGKDTLIPMFDYQQKNRIGSK------VIKGASSGVVIVDGTYALDA-------- 163 (899)
Q Consensus 102 ~~~~p~s~d~~~l~~~L~~l~----~~~~i~~p~~d~~~~~~~~~~------~~~~~~~~vVIvEG~~l~~~-------- 163 (899)
.++.|+++|...+.+.|..++ .+..+.+|.||+..+...+++ .....+.++||+||.++...
T Consensus 161 ~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~ 240 (347)
T PLN02796 161 LRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVK 240 (347)
T ss_pred cCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhh
Confidence 135578999999999988887 567899999999986533221 12335678999999998651
Q ss_pred ------------------hhhcCCCEEEEEEcC-HHHHHHHHHHhcc------CCc---cCHHHHHHhhcHHhhhhc
Q 002620 164 ------------------RLRSLLDIRVAVVGG-VHFSLISKVQYDI------GDS---CSLDSLIDSIFPLFRKHI 212 (899)
Q Consensus 164 ------------------~l~~~~D~~I~Vda~-~~~rl~R~i~RD~------~~r---~~~e~~~~~~~p~~~k~I 212 (899)
.+...+|.-|.+.++ .+.-.+||.+-+. ... ....++++.++|.|+.|.
T Consensus 241 ~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 241 AVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYL 317 (347)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122356788888877 4555666643321 112 345667778899888875
No 84
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.33 E-value=1.2e-12 Score=136.21 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=110.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh-hc--------cccc---CCCcccccHHHHHHHHH---
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE-QV--------KDFK---YDDFSSLDLSLLSKNIS--- 578 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~-~~--------~~~~---~d~p~t~D~~lL~~~L~--- 578 (899)
...|++|||+|++||||||+++.|++.+|+.+++.|...+.- +. ..+. ++ .+.+|...|.+.+-
T Consensus 3 ~~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~ 81 (204)
T PRK14733 3 FINTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESK 81 (204)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCH
Confidence 346899999999999999999999998999999999886652 10 0111 11 36788877777552
Q ss_pred -HHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhh--hhcCCEEEEEEcCchhhHHHHhhcCccccc
Q 002620 579 -DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEI--RKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (899)
Q Consensus 579 -~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l--~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg 655 (899)
.++.-+.+.+|........+. . ..+..++++|..+++.... ...+|..|+|++|.+.++.|.+.||...+.
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~-----~-~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~ 155 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQV-----K-ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQ 155 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH-----H-hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHH
Confidence 223334566666554432222 1 1123689999999987654 568999999999999999999999854432
Q ss_pred cccchhhHHhhccchhhhhcccccCcccEEEcCCC
Q 002620 656 CFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 656 ~~~~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
... .......|..+ .+..||+||+|+.
T Consensus 156 ~a~---~ri~~Q~~~ee-----k~~~aD~VI~N~g 182 (204)
T PRK14733 156 QAV---AFINLQISDKE-----REKIADFVIDNTE 182 (204)
T ss_pred HHH---HHHHhCCCHHH-----HHHhCCEEEECcC
Confidence 221 22333333322 2478999999986
No 85
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.32 E-value=4.3e-12 Score=129.80 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=113.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------------Ccccccccccchhhc---------ccccCCCcccccHH
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------------CEVVSLESYFKSEQV---------KDFKYDDFSSLDLS 571 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~-------------~~vislDdfy~~~~~---------~~~~~d~p~t~D~~ 571 (899)
.+...++|++|++|+||||++..+..+.. +.++.||+|+..... .....+.|.|||-+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 45677899999999999999999987432 346899999886331 12235789999999
Q ss_pred HHHHHHHHHh--cCCceecccccccccccCCccceeeccCCcEEEEEeecccc-----hhhhhcCCEEEEEEcCchhhHH
Q 002620 572 LLSKNISDIR--NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLI 644 (899)
Q Consensus 572 lL~~~L~~L~--~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~-----~~l~~~~D~~I~vd~~~d~rl~ 644 (899)
++.+.+..|+ .-..+.+|.||+..||.++. .+.+.....|||+||.|++. ..+.+++|.++|++.+.+...+
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~D-dicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVPD-DICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccCCCCcc-ceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 9999999998 55679999999999998874 45555667999999999975 4578889999999999999999
Q ss_pred HHhhcCccc
Q 002620 645 SRVQRDKSR 653 (899)
Q Consensus 645 Rri~RD~~~ 653 (899)
|.-.|....
T Consensus 275 RVa~RHl~s 283 (323)
T KOG2702|consen 275 RVAKRHLQS 283 (323)
T ss_pred HHHHHhhcc
Confidence 988887654
No 86
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.29 E-value=2.2e-12 Score=133.69 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=105.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhc-------------ccccCCCcccccHHHHHHHHH----H
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS----D 579 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-------------~~~~~d~p~t~D~~lL~~~L~----~ 579 (899)
+.+|||+|++||||||+++.|++ +|+.++++|.+.+..-. +.-.+...+.+|...|.+.+- .
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999999 99999999999775210 111122346778777776542 2
Q ss_pred HhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccc
Q 002620 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (899)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~ 659 (899)
+..-+.+.+|..-....... .......++++|+.+++...+...+|..|+|++|.++++.|...|+... .+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~-----~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s----~e 151 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQL-----QEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLS----EE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCC----HH
Confidence 22223455555333322211 1111226999999999998899999999999999999999999886322 22
Q ss_pred h-hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 660 ~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
. ........+.. .....||++|+|+.+
T Consensus 152 ~~~~ri~~Q~~~~-----~~~~~ad~vI~N~g~ 179 (194)
T PRK00081 152 EAEAIIASQMPRE-----EKLARADDVIDNNGD 179 (194)
T ss_pred HHHHHHHHhCCHH-----HHHHhCCEEEECCCC
Confidence 1 12222222222 234679999999753
No 87
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=4.9e-12 Score=146.47 Aligned_cols=167 Identities=26% Similarity=0.444 Sum_probs=144.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC----------CeEEecCcccccc------------ccCCCCCCccHHHHHHH
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRVGV------------DEGNDLDSIDFDALVQN 117 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg----------~~vI~~D~~~~~~------------~~~~~p~s~d~~~l~~~ 117 (899)
..+++||+.|+++|||||++..+.+.++ +..++.|.||+.+ ...+.|++++.+.+...
T Consensus 42 ~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~~ 121 (473)
T KOG4203|consen 42 KEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYLT 121 (473)
T ss_pred cceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHHH
Confidence 4689999999999999999999888777 3556778787742 23467899999999999
Q ss_pred HHhhhcCCccccccchhhhhhcccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-c
Q 002620 118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-C 195 (899)
Q Consensus 118 L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~ 195 (899)
+.++.++..+..|.|++..+.+.........+.+++++||++.+. ...+++.+.++||+.+.+.++.|++.|+...+ .
T Consensus 122 ~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~ 201 (473)
T KOG4203|consen 122 LKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERGR 201 (473)
T ss_pred HhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhcc
Confidence 999999999999999999999987766667777899999999987 68889999999999999999999999998876 4
Q ss_pred CHHHHHH----hhcHHhhhhcCCCcCcCcEEEECC
Q 002620 196 SLDSLID----SIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 196 ~~e~~~~----~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
+++.+.. ...|.+..+|+|+++.||++|...
T Consensus 202 ~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~ 236 (473)
T KOG4203|consen 202 DLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG 236 (473)
T ss_pred cHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence 5555554 458999999999999999999765
No 88
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.25 E-value=1.1e-11 Score=129.21 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=107.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----hh-----c----ccccCCCcccccHHHHHHHHH----HH
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~----~~-----~----~~~~~d~p~t~D~~lL~~~L~----~L 580 (899)
++|||+|++||||||+++.|+. +|+.+++.|...+. .. . +..-.+..+++|...|.+.+- .+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 89999999976554 11 0 111223457888888777542 22
Q ss_pred hcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch
Q 002620 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (899)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~ 660 (899)
+.-+.+.+|..-.....+.. . ....+..++++|..+++...+.+.+|..|||++|.++++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~--~-~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~e~ 153 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFN--E-ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDEDD 153 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHH--H-HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 22334556654332221110 0 0012346999999999988888899999999999999999999885 333222
Q ss_pred -hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 661 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
........+.+.. ...||++|+|+.+
T Consensus 154 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g~ 180 (200)
T PRK14734 154 ARRRIAAQIPDDVR-----LKAADIVVDNNGT 180 (200)
T ss_pred HHHHHHhcCCHHHH-----HHhCCEEEECcCC
Confidence 2233333333332 3679999999765
No 89
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=6.2e-12 Score=130.48 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=105.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------c----ccccCCCcccccHHHHHHHHH----HHh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----DIR 581 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~---------~----~~~~~d~p~t~D~~lL~~~L~----~L~ 581 (899)
+|||+|++||||||+++.|+. +|+.+++.|...+.-- . +..-++..+++|...|.+.+- .++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 7999999998866411 0 111123347788877777552 222
Q ss_pred cCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch-
Q 002620 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (899)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~- 660 (899)
.-+.+.+|..-....... .......++|+|..+++...+...||..|||++|.++++.|.+.|+... .+.
T Consensus 80 ~L~~i~hP~v~~~~~~~~-----~~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s----~e~a 150 (196)
T PRK14732 80 ALNELIHPLVRKDFQKIL-----QTTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMK----KEDV 150 (196)
T ss_pred HHHHHhhHHHHHHHHHHH-----HHHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCC----HHHH
Confidence 233455665443322211 0011236899999999998888999999999999999999999997432 222
Q ss_pred hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 661 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
........+ +.+....||++|+|+.+
T Consensus 151 ~~ri~~Q~~-----~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 151 LARIASQLP-----ITEKLKRADYIVRNDGN 176 (196)
T ss_pred HHHHHHcCC-----HHHHHHhCCEEEECCCC
Confidence 122222222 33456789999999764
No 90
>PLN02422 dephospho-CoA kinase
Probab=99.21 E-value=1.8e-11 Score=129.51 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=108.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh----h-----c----ccccCCCcccccHHHHHHHHH----HH
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~----~-----~----~~~~~d~p~t~D~~lL~~~L~----~L 580 (899)
.+|||+|++||||||+++.|++ +|+.++++|+..+.- . . +..-++..+++|...|.+.+- .+
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3799999999999999999994 899999999987751 0 0 111123457888888877552 23
Q ss_pred hcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch
Q 002620 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (899)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~ 660 (899)
+.-+.+.+|..-.....+.. ... ..+.+++++|..+++...+.+.+|..|+|++|.+.++.|.+.|+. .+.+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~--~~~-~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g----~s~ee 153 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEIL--KLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDG----LSEEQ 153 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHH--HHH-hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCC----CCHHH
Confidence 33344666664332211110 000 122469999999999988889999999999999999999999973 22222
Q ss_pred -hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 661 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
........|... ....||++|+|+.+
T Consensus 154 a~~Ri~~Q~~~ee-----k~~~AD~VI~N~gs 180 (232)
T PLN02422 154 ARNRINAQMPLDW-----KRSKADIVIDNSGS 180 (232)
T ss_pred HHHHHHHcCChhH-----HHhhCCEEEECCCC
Confidence 122332333322 25679999999864
No 91
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.18 E-value=1.6e-11 Score=131.03 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=105.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh-h--------c----ccccCCCcccccHHHHHHHHH----HH
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE-Q--------V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~-~--------~----~~~~~d~p~t~D~~lL~~~L~----~L 580 (899)
++|||+|++||||||+++.|.+.+|+.++++|...+.- + . +..-.+..+++|...|.+.+- .+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 68999999999999999999998899999999887651 1 0 111122247888888887542 22
Q ss_pred hcCCceecccccccccccCCc---cce--e-eccCCcEEEEEeecccchhh-hhcCCEEEEEEcCchhhHHHHhhcCccc
Q 002620 581 RNGRRTKVPIFDLETGARSGF---KEL--E-VSEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (899)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~---~~~--~-~~~~~dVVIvEG~~~~~~~l-~~~~D~~I~vd~~~d~rl~Rri~RD~~~ 653 (899)
+.-+.+.+|..-.....+... +.. . ......++++|..++++..+ ...+|..|+|++|.+.++.|.+.|+.
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g-- 159 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG-- 159 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC--
Confidence 333345556532221111100 000 0 01123599999999998764 45789999999999999999988853
Q ss_pred cccccch-hhHHhhccchhhhhcccccCcccEEEcCC--CCC
Q 002620 654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND--FDP 692 (899)
Q Consensus 654 rg~~~~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~--~~~ 692 (899)
.+.+. .+......+. ...+..||++|.|+ .+.
T Consensus 160 --~s~eea~~Ri~~Q~~~-----~ek~~~aD~VI~N~~~g~~ 194 (244)
T PTZ00451 160 --FSKEEALQRIGSQMPL-----EEKRRLADYIIENDSADDL 194 (244)
T ss_pred --CCHHHHHHHHHhCCCH-----HHHHHhCCEEEECCCCCCH
Confidence 22222 1222222222 22357899999998 543
No 92
>PRK01184 hypothetical protein; Provisional
Probab=99.18 E-value=1.1e-10 Score=119.53 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=88.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccc-cCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (899)
|.+|+|+|++||||||+|+ +++.+|++++++|+..+... ..+.+... +.+.+....+... .....+....++.+
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~--~~~g~~~~~~~~~--~~~~~~~~~~~~~i 75 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTD--ENIGKVAIDLRKE--LGMDAVAKRTVPKI 75 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCc--HHHHHHHHHHHHH--HChHHHHHHHHHHH
Confidence 5689999999999999998 56779999999988655332 22222111 1222222221110 00001111111111
Q ss_pred cccccccCCCcEEEEEccccc-h-hhhhcCCC---EEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhcHHhhhhcCC
Q 002620 141 GSKVIKGASSGVVIVDGTYAL-D-ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP 214 (899)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~-~-~~l~~~~D---~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~~~~p~~~k~Iep 214 (899)
.......+|++|.... + ..+.+.++ .+|+|+++.+.+..|...|+.... .+.+.+.++.......-+..
T Consensus 76 -----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~ 150 (184)
T PRK01184 76 -----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGE 150 (184)
T ss_pred -----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHH
Confidence 1123568999998433 2 24444445 899999999999999998874332 23444444332211110222
Q ss_pred CcCcCcEEEECCC
Q 002620 215 DLHHAQIRINNRF 227 (899)
Q Consensus 215 ~~~~ADiII~N~~ 227 (899)
..+.||++|+|+.
T Consensus 151 ~~~~ad~vI~N~~ 163 (184)
T PRK01184 151 VIALADYMIVNDS 163 (184)
T ss_pred HHHhcCEEEeCCC
Confidence 3578999999883
No 93
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.15 E-value=1.2e-10 Score=114.00 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=86.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
+|+|+|++||||||+|+.|++.+|+++++.|.+..... ........ ..+.++.........
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-------------~~~~~~~~-----~~~~i~~~l~~~~~~- 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-------------GKLASEVA-----AIPEVRKALDERQRE- 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-------------HHHHHHhc-----ccHhHHHHHHHHHHH-
Confidence 58999999999999999999999999999995432110 00000000 001111111111100
Q ss_pred ccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHHh----hcHHhhhhcCCCcC
Q 002620 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDS----IFPLFRKHIEPDLH 217 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r--~~~e~~~~~----~~p~~~k~Iep~~~ 217 (899)
......+|+||.++... +.+.+|++|||++|++.+++|++.|+...+ .+.+++.+. -.+....|+.++..
T Consensus 62 ---~~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 137 (147)
T cd02020 62 ---LAKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKL 137 (147)
T ss_pred ---HhhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccC
Confidence 11123588899876432 245689999999999999999999764322 355554443 25566788888764
Q ss_pred c-CcEEEEC
Q 002620 218 H-AQIRINN 225 (899)
Q Consensus 218 ~-ADiII~N 225 (899)
. -|++|+.
T Consensus 138 ~~~dl~i~~ 146 (147)
T cd02020 138 AEDAIVIDT 146 (147)
T ss_pred CCCcEEEeC
Confidence 4 4577765
No 94
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=3.1e-10 Score=116.77 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=102.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccccccc---CCCCCCccHHHHHHHHHhhh-----------cCCcc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLT-----------EGKDT 127 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~---~~~p~s~d~~~l~~~L~~l~-----------~~~~i 127 (899)
.++|+|+||+||||||+|+.||+.||+.++++..+||.+.- ....+.-|.+.+.+.+..+. +|.++
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 38999999999999999999999999999999999995321 12223334444444433221 11222
Q ss_pred ccccchhhhhhcc-------------ccccccc-CCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 002620 128 LIPMFDYQQKNRI-------------GSKVIKG-ASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (899)
Q Consensus 128 ~~p~~d~~~~~~~-------------~~~~~~~-~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~ 193 (899)
....-...+...+ ....... ...+-+|+||--+. ..+.+.++++|||++++++|.+||.+.....
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiG-TvV~PdA~lKiFLtAS~e~RA~RR~~q~~~~ 162 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIG-TVVFPDAELKIFLTASPEERAERRYKQLQAK 162 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCc-ceECCCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 1111111111111 0000111 12245888998765 3556889999999999999999998866554
Q ss_pred c--cCHHHHHHhh----cHHhhhhcCCCcCcCc-EEEECCCCC
Q 002620 194 S--CSLDSLIDSI----FPLFRKHIEPDLHHAQ-IRINNRFVS 229 (899)
Q Consensus 194 r--~~~e~~~~~~----~p~~~k~Iep~~~~AD-iII~N~~~~ 229 (899)
. ...+++.+.+ .....+-+.|.++..| ++|+++.++
T Consensus 163 g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~ms 205 (222)
T COG0283 163 GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLS 205 (222)
T ss_pred cCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCc
Confidence 4 1245555433 3444444677777777 455777554
No 95
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.14 E-value=3.7e-11 Score=125.91 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=99.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------c-ccc-----cCCCccc--ccHHHHHHHH
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF-----KYDDFSS--LDLSLLSKNI 577 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~---------~-~~~-----~~d~p~t--~D~~lL~~~L 577 (899)
..+++|||+|++||||||+++.|.. +|+.+++.|...+.-. . ..+ +.+..+. +|...|.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 4579999999999999999999997 8999999997655310 0 000 1111122 5655554332
Q ss_pred H----HHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccc
Q 002620 578 S----DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (899)
Q Consensus 578 ~----~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~ 653 (899)
. .++.-+.+.+|..-....... ... ...+..++++|+.+++...+...+|..|+|++|.+++..|.+.|+...
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i--~~~-~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s 158 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAV--DRA-ARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGS 158 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHH--HHH-HhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCC
Confidence 1 122222344444322211111 000 012346999999998888888889999999999999999999997431
Q ss_pred cccccch-hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 654 rg~~~~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
.+. .+......+.. .. ...||++|+|+.+
T Consensus 159 ----~e~~~~Ri~~q~~~~-~~----~~~ad~vI~N~g~ 188 (208)
T PRK14731 159 ----REEIRRRIAAQWPQE-KL----IERADYVIYNNGT 188 (208)
T ss_pred ----HHHHHHHHHHcCChH-HH----HHhCCEEEECCCC
Confidence 111 12222222221 22 2469999998753
No 96
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.13 E-value=3e-10 Score=116.37 Aligned_cols=127 Identities=24% Similarity=0.439 Sum_probs=105.9
Q ss_pred cccccccccCCCCCCCCCcCCCc-eEEEEee-CCEEEEEEeccccccCcccccceeEEeh-----------hhHHHHHHH
Q 002620 728 QNFIDMYLRLPGIPTNGQLTESD-CIRVRIC-EGRFALLIREPLREGNFIIQPKVDFDIS-----------ISTVAGLLN 794 (899)
Q Consensus 728 ~~y~d~Y~~~~~l~~~~~~~~~~-~irir~~-~~~~~l~~~~~~~d~~~~~~~~~~~~v~-----------~~~~~~l~~ 794 (899)
..+.|+||..| +..+..++ |||||.. ++++++|+|+|..++. +++++++|+ ..+...|.+
T Consensus 33 ~~~~d~Y~dt~----~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~ 105 (185)
T PF01928_consen 33 EHQTDTYFDTP----DRDLRKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEA 105 (185)
T ss_dssp EEEEEEEEEET----TTHHHHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHH
T ss_pred EEEEEEEEeCC----ChhHHhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHH
Confidence 35679999999 65555554 9999975 6777799999999998 778888875 357889999
Q ss_pred cCceeeeeeeeeeEEeecCcEEEEEecccCC-CCceEEE--ecccHHHHHHHHhh-------CCC-CCCccchhHHHHH
Q 002620 795 LGYQAVAYIEASAFIYQDGKILIEVDHLQDA-PSPYLQI--KGVDKEAVAAAGST-------LKL-DGSYTTKSYLQII 862 (899)
Q Consensus 795 lg~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~--~~~~~~~~~~~~~~-------l~~-~~~~~~~syle~~ 862 (899)
+||.++..+.+.|+.|..++++|++|+++++ + .|+|| ++.+.+.+.+++.+ ||+ +.+.++++|++|+
T Consensus 106 l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~-~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 106 LGLRPVARIEKKRRSYRLEGVEVELDEVDGLPG-TFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTTE-EEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred hcCceeEEEEEEEEEEEECCEEEEEEEEecceE-EEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 9999999999999999999999999999999 5 78777 66666666666655 999 6688999999985
No 97
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.09 E-value=1.2e-10 Score=119.87 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=103.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh----h-----c-ccc---cCCCcccccHHHHHHHHH----HHh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V-KDF---KYDDFSSLDLSLLSKNIS----DIR 581 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~----~-----~-~~~---~~d~p~t~D~~lL~~~L~----~L~ 581 (899)
+|||+|++||||||+++.|++..++.++++|.+.+.- . . ..+ -++..+.+|...|.+.+- .+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 4899999999999999999997679999999996541 0 0 011 122346677766666541 122
Q ss_pred cCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch-
Q 002620 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (899)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~- 660 (899)
.-+.+.+|..-........ . ......+|++|..+++...+...+|..|+|++|.++++.|.+.|+ |.+.+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~--~--~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLA--Q--FQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHhhCHHHHHHHHHHHH--H--hhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 2234455554333222110 0 011225899999888877888999999999999999999999998 322222
Q ss_pred hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 661 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
.+......+. ...+..||++|+|+.+
T Consensus 153 ~~r~~~q~~~-----~~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 153 QKRLASQMDI-----EERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHhcCCH-----HHHHHhCCEEEECCCC
Confidence 1222222222 2335679999999864
No 98
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.07 E-value=6.5e-10 Score=111.94 Aligned_cols=150 Identities=20% Similarity=0.180 Sum_probs=87.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
+|+|+|++||||||+|+.|++.+|++++++|++++........ +...+..... . .|.+..........
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~----~----~~~~~~~~~~~i~~- 69 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGL---DLIEFLNYAE----E----NPEIDKKIDRRIHE- 69 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCC---CHHHHHHHHh----c----CcHHHHHHHHHHHH-
Confidence 7999999999999999999999999999998876543322111 1111111100 0 11111111111110
Q ss_pred ccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhh----cHHhhhhc---CCCc
Q 002620 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI----FPLFRKHI---EPDL 216 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~----~p~~~k~I---ep~~ 216 (899)
. ......+|++|.+... .+...+|++|||++|.+++++|...|+..........+... ...+..+. +-..
T Consensus 70 ~--~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (171)
T TIGR02173 70 I--ALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDL 146 (171)
T ss_pred H--HhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 0 1122467779976532 23456899999999999999999999854433222222211 11222222 2345
Q ss_pred CcCcEEEECCCC
Q 002620 217 HHAQIRINNRFV 228 (899)
Q Consensus 217 ~~ADiII~N~~~ 228 (899)
..-|++|+++..
T Consensus 147 ~~ydl~i~t~~~ 158 (171)
T TIGR02173 147 SIYDLVINTSNW 158 (171)
T ss_pred ccccEEEECCCC
Confidence 666899998844
No 99
>PRK06217 hypothetical protein; Validated
Probab=99.07 E-value=7.8e-10 Score=113.50 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=72.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC--CCCCCccHHHHHHHHHhhhcCCccccccchhhhhhc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG--NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~--~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (899)
|..|.|+|++||||||+|+.|++.+|++++++|.++..-... ..... +...+...+..+
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------ 61 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRP-PEERLRLLLEDL------------------ 61 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCC-HHHHHHHHHHHH------------------
Confidence 456999999999999999999999999999999987632210 00000 001111111111
Q ss_pred ccccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002620 140 IGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~ 192 (899)
....-+|+||.+... ..+...+|.+|||++|.++++.|...|...
T Consensus 62 --------~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 62 --------RPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred --------hcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 011357888988754 456678999999999999999999998743
No 100
>COG4240 Predicted kinase [General function prediction only]
Probab=99.06 E-value=4.5e-10 Score=115.29 Aligned_cols=115 Identities=22% Similarity=0.348 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C---CeEEecCccccccc--------------cCCCCC
Q 002620 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G---CTLISMENYRVGVD--------------EGNDLD 107 (899)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g---~~vI~~D~~~~~~~--------------~~~~p~ 107 (899)
+...|.....+.++|+++||.||.||||||+|..|...| | +..+|.||+|.... -++-|+
T Consensus 36 ll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpG 115 (300)
T COG4240 36 LLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPG 115 (300)
T ss_pred HHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCC
Confidence 333433334456779999999999999999999987765 3 46689999987532 246789
Q ss_pred CccHHHHHHHHHhhhcCC-ccccccchhhhhhccccc----ccccCCCcEEEEEccccch
Q 002620 108 SIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSK----VIKGASSGVVIVDGTYALD 162 (899)
Q Consensus 108 s~d~~~l~~~L~~l~~~~-~i~~p~~d~~~~~~~~~~----~~~~~~~~vVIvEG~~l~~ 162 (899)
++|...+...|+.+.+++ ++.+|.||+......+++ ....-+.+++|+||.++..
T Consensus 116 THD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGf 175 (300)
T COG4240 116 THDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGF 175 (300)
T ss_pred CCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeec
Confidence 999999999999998876 468899999554443322 2222347899999998864
No 101
>PRK04182 cytidylate kinase; Provisional
Probab=99.06 E-value=3.8e-10 Score=114.46 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=85.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
+|+|+|++||||||+|+.|++.+|++++++|++++......... ...+.+. .. ..|.++.........
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~---~~~~~~~----~~----~~~~~~~~~~~~~~~- 69 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMS---LEEFNKY----AE----EDPEIDKEIDRRQLE- 69 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCC---HHHHHHH----hh----cCchHHHHHHHHHHH-
Confidence 79999999999999999999999999999988766443221111 1111110 00 111112211111110
Q ss_pred ccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHH-HhhcH---Hhhhhc---CCCc
Q 002620 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI-DSIFP---LFRKHI---EPDL 216 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~-~~~~p---~~~k~I---ep~~ 216 (899)
. ......+|++|.+... .+.+..+++|||++|.+.+++|...|+..........+ +.... .+..+. .+..
T Consensus 70 -~-~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (180)
T PRK04182 70 -I-AEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDL 146 (180)
T ss_pred -H-HhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 0 1022356677764422 11234789999999999999999888643222121111 11111 122222 3445
Q ss_pred CcCcEEEECCCCC
Q 002620 217 HHAQIRINNRFVS 229 (899)
Q Consensus 217 ~~ADiII~N~~~~ 229 (899)
..||++|+++..+
T Consensus 147 ~~~d~~idt~~~~ 159 (180)
T PRK04182 147 SIYDLVINTSRWD 159 (180)
T ss_pred ccccEEEECCCCC
Confidence 7899999988544
No 102
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.06 E-value=1.5e-10 Score=120.12 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=101.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh---------hcccccCC-----CcccccHHHHHHHH----H
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---------QVKDFKYD-----DFSSLDLSLLSKNI----S 578 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~---------~~~~~~~d-----~p~t~D~~lL~~~L----~ 578 (899)
+++|||+|.+||||||+|+.+++ +|+.++++|++.+.- ... ..|+ .-+.+|...|.+.+ .
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~-~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIA-ERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHH-HHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 57999999999999999999999 999999999998841 001 1122 22445555555433 1
Q ss_pred HHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCcccccccc
Q 002620 579 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (899)
Q Consensus 579 ~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~ 658 (899)
.+..-+.+.+|......- .. ..... ..++++|-.+++.......+|..|.|++|.++++.|.++|+...++..
T Consensus 80 ~~~~Le~i~hPli~~~~~-~~----~~~~~-~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~- 152 (201)
T COG0237 80 ARLKLEKILHPLIRAEIK-VV----IDGAR-SPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDA- 152 (201)
T ss_pred HHHHHHHhhhHHHHHHHH-HH----HHHhh-CCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHH-
Confidence 112222344443222111 00 00011 228888888887766666699999999999999999999983332221
Q ss_pred chhhHHhhccchhhhhcccccCcccEEEcCCCCC
Q 002620 659 SQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (899)
Q Consensus 659 ~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (899)
........+..++ ...||+|++|++..
T Consensus 153 --~~~~~~Q~~~~ek-----~~~ad~vi~n~~~i 179 (201)
T COG0237 153 --EARLASQRDLEEK-----LALADVVIDNDGSI 179 (201)
T ss_pred --HHHHHhcCCHHHH-----HhhcCChhhcCCCH
Confidence 1222233344444 36899999998754
No 103
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.05 E-value=2.6e-10 Score=108.26 Aligned_cols=115 Identities=25% Similarity=0.352 Sum_probs=75.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcc--cccHHHHHHHHHHHhcCCceeccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFS--SLDLSLLSKNISDIRNGRRTKVPIFDLETG 596 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~--t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~ 596 (899)
+|+|+|++||||||+|+.|++.+|+.++++|+++..........+.+. ..+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 689999999999999999999999999999995443222211112221 2234445555554332
Q ss_pred ccCCccceeeccCCcEEEEEeecccchh-hhhcCCEEEEEEcCchhhHHHHhhcCccccccc
Q 002620 597 ARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (899)
Q Consensus 597 ~r~~~~~~~~~~~~dVVIvEG~~~~~~~-l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~ 657 (899)
....+.+|+||.+..... .....|..||++.+.+.++.|++.|...++|+.
T Consensus 67 ----------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~ 118 (121)
T PF13207_consen 67 ----------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRD 118 (121)
T ss_dssp ----------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESS
T ss_pred ----------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCC
Confidence 123578999996651111 223456889999988878888888877777664
No 104
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.04 E-value=7.6e-10 Score=129.28 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=99.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccccccc---CCCCCCccHHHHHHHHHhhh--------cCCcccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLT--------EGKDTLI 129 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~---~~~p~s~d~~~l~~~L~~l~--------~~~~i~~ 129 (899)
++.+|+|+|++||||||+|+.|++.||+.++++|.+|+.+.. ....+.-+...+...+..+. .+..+..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~ 362 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI 362 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence 457899999999999999999999999999999999996421 11122223333433332221 1122444
Q ss_pred ccchhhhhhcc--------------------cccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 002620 130 PMFDYQQKNRI--------------------GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (899)
Q Consensus 130 p~~d~~~~~~~--------------------~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~R 189 (899)
+.++...+-+. ...........-+|+||-.+.. .+.+.+|++|||+|+.+.+.+|+..+
T Consensus 363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt-vV~P~AdlKIfL~As~evRa~RR~~~ 441 (512)
T PRK13477 363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT-HVFPDAELKIFLTASVEERARRRALD 441 (512)
T ss_pred CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee-EEcCCCCEEEEEECCHHHHHHHHHhh
Confidence 44332211110 0000001122348999987654 33466899999999999999998766
Q ss_pred ccCCc---cCHHHHHHh----hcHHhhhhcCCCcCc-CcEEEECCCCC
Q 002620 190 DIGDS---CSLDSLIDS----IFPLFRKHIEPDLHH-AQIRINNRFVS 229 (899)
Q Consensus 190 D~~~r---~~~e~~~~~----~~p~~~k~Iep~~~~-ADiII~N~~~~ 229 (899)
..... .+.+.+.+. ......+.+.|.... ++++|+++.++
T Consensus 442 l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~ls 489 (512)
T PRK13477 442 LQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLS 489 (512)
T ss_pred hhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCC
Confidence 32111 223443332 233334556665444 67889888554
No 105
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.02 E-value=8.6e-10 Score=116.34 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=95.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccc----cCCCCCCccHHHHHHHHHhhh--------------cC
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLT--------------EG 124 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~p~s~d~~~l~~~L~~l~--------------~~ 124 (899)
.+|+|+||+||||||+++.|++.+|+.++++|.+|+.+. ..+. ..-+...+...+..+. .+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRV-DLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCC-CCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 689999999999999999999999999999999987431 1111 1112233332222110 00
Q ss_pred C-----------------ccccccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHH
Q 002620 125 K-----------------DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV 187 (899)
Q Consensus 125 ~-----------------~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i 187 (899)
. -..+|.+.......... .....-+|+||..+... +.+..|+++|++++.+.+.+|+.
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~----~a~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra~Rr~ 156 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQA----LAKNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERAKRRY 156 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHH----HhhcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHHHHHH
Confidence 0 11223322222222211 12223589999975443 34558999999999999999999
Q ss_pred HhccCC--ccCHHHHHHhhcHH----hhhhcCCCcCcCc-EEEECCCCC
Q 002620 188 QYDIGD--SCSLDSLIDSIFPL----FRKHIEPDLHHAQ-IRINNRFVS 229 (899)
Q Consensus 188 ~RD~~~--r~~~e~~~~~~~p~----~~k~Iep~~~~AD-iII~N~~~~ 229 (899)
.|.... ..+.+++.+.+... ..+...|.....| ++|+++.++
T Consensus 157 ~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ 205 (217)
T TIGR00017 157 KQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLS 205 (217)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCC
Confidence 987553 23455555544332 3333455444333 556766443
No 106
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.00 E-value=1.7e-09 Score=110.89 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=102.3
Q ss_pred cccccccCCCCCCCCCcCCCc-eEEEEeeCCEEEEEEeccccccCcccccceeEEeh---------------hhHHHHHH
Q 002620 730 FIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS---------------ISTVAGLL 793 (899)
Q Consensus 730 y~d~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~---------------~~~~~~l~ 793 (899)
-.++||..| +.+++.++ +||||..++++.+|+|+|.. ..|+++|.+|+ ..+...|.
T Consensus 29 q~n~Yfdtp----~~~l~~~~~aLRiR~~~~~~~~TlK~~~~----~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~L~ 100 (180)
T cd07762 29 QTNYYFDTP----DFALKKKHSALRIREKEGKAELTLKVPQE----VGLLETNQPLTLEEAEKLIKGGTLPEGEILDKLK 100 (180)
T ss_pred EEEEEEeCC----CHHHHhCCcEEEEEeeCCeEEEEEeeCCC----CCCcEEeecCCHHHHHHHhccccCCchHHHHHHH
Confidence 468999999 88887776 89999999999999999985 78999999996 36889999
Q ss_pred HcCcee-----eeeeeeeeEEeecCcEEEEEecccCCCCceEEEe------cccHHHHHHHHhhCCCCCCcc
Q 002620 794 NLGYQA-----VAYIEASAFIYQDGKILIEVDHLQDAPSPYLQIK------GVDKEAVAAAGSTLKLDGSYT 854 (899)
Q Consensus 794 ~lg~~~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~ 854 (899)
+|||.. ++.+++.|..|..++.++++|++.++|..+.||. ...++.+.++++++||+-...
T Consensus 101 ~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~~ 172 (180)
T cd07762 101 ELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRPA 172 (180)
T ss_pred HhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCcccC
Confidence 999985 8999999999999999999999999997668883 356788999999999976444
No 107
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.00 E-value=2.2e-10 Score=115.89 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=113.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhc-c--c-----ccCC-----CcccccHHHHHHHHH----H
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-K--D-----FKYD-----DFSSLDLSLLSKNIS----D 579 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-~--~-----~~~d-----~p~t~D~~lL~~~L~----~ 579 (899)
.++||++|++||||||+++.+. .+|+++|+.|...+.--. + . ..|+ +-+.+|.+.|.+.+- .
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 3799999999999999999999 689999999988765100 0 0 0121 236677777766441 2
Q ss_pred HhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccc
Q 002620 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (899)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~ 659 (899)
...-+.+.+|..-+..-.... ........++|+|-.++|+..+.+.+-..|.|.+|.++.++|.+.||...+...
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~---~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dA-- 154 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEIL---KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDA-- 154 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHH--
Confidence 222334666665444321110 012345789999999999988999999999999999999999999994332221
Q ss_pred hhhHHhhccchhhhhcccccCcccEEEcCCCCCCCC
Q 002620 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695 (899)
Q Consensus 660 ~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~ 695 (899)
........|..++ .+.||+||+|+.++.--
T Consensus 155 -e~Rl~sQmp~~~k-----~~~a~~Vi~Nng~~~~l 184 (225)
T KOG3220|consen 155 -ENRLQSQMPLEKK-----CELADVVIDNNGSLEDL 184 (225)
T ss_pred -HHHHHhcCCHHHH-----HHhhheeecCCCChHHH
Confidence 1233334444333 57899999999877443
No 108
>PRK06217 hypothetical protein; Validated
Probab=98.97 E-value=1.6e-09 Score=111.13 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=74.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~ 597 (899)
..|.|+|++||||||+|++|++.+|..++++|++++...... +...... -..+...+..+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~---------------- 62 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP--FTTKRPP-EERLRLLLEDLR---------------- 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC--ccccCCH-HHHHHHHHHHHh----------------
Confidence 358899999999999999999999999999999997432111 1111111 111111112211
Q ss_pred cCCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccc
Q 002620 598 RSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (899)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~ 653 (899)
..+-+|+||.+... ..+...+|..||+++|.+.++.|...|....
T Consensus 63 -----------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~ 108 (183)
T PRK06217 63 -----------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR 108 (183)
T ss_pred -----------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence 12347889998754 5567789999999999999999999997654
No 109
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.96 E-value=2.9e-09 Score=113.01 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=94.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccccccc---CCCCCCccHHHHHHHHHhhhc--------------C
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLTE--------------G 124 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~---~~~p~s~d~~~l~~~L~~l~~--------------~ 124 (899)
+.+|+|+|++||||||+|+.|++.+|+.++++|.+|+.+.. ....+.-+.+.+.+.+..+.. +
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 47899999999999999999999999999999999885321 111222233334333222111 0
Q ss_pred Cccc-----------------cccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHH
Q 002620 125 KDTL-----------------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV 187 (899)
Q Consensus 125 ~~i~-----------------~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i 187 (899)
..+. .|..+........ ......-+|++|-.+.. .+.+.++++|||++|.+.+.+|+.
T Consensus 84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~----~ia~~~~~Vi~GR~~~~-~vl~~a~~~ifl~a~~e~R~~Rr~ 158 (225)
T PRK00023 84 EDVTDEIRTEEVGNAASKVAAIPEVREALVERQR----AFAREPGLVMDGRDIGT-VVFPDAELKIFLTASAEERAERRY 158 (225)
T ss_pred cchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHH----HHhhCCCEEEEecChhe-EEeCCCCEEEEEECCHHHHHHHHH
Confidence 0000 0111111000000 11123468889986433 244458999999999999988887
Q ss_pred HhccCC--ccCHHHHHH----hhcHHhhhhcCCCcCcCc-EEEECCCCC
Q 002620 188 QYDIGD--SCSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRFVS 229 (899)
Q Consensus 188 ~RD~~~--r~~~e~~~~----~~~p~~~k~Iep~~~~AD-iII~N~~~~ 229 (899)
.+.... ..+.+++.+ +-.....+++.|....+| ++|+++.++
T Consensus 159 ~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~ 207 (225)
T PRK00023 159 KELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLS 207 (225)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCC
Confidence 764322 123333332 222223445677677776 777777443
No 110
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.95 E-value=1.5e-09 Score=103.08 Aligned_cols=104 Identities=27% Similarity=0.362 Sum_probs=65.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccc--cccccCCCCCC----ccHHHHHHHHHhhhcCCccccccchhhhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYR--VGVDEGNDLDS----IDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~--~~~~~~~~p~s----~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (899)
+|+|+|++||||||+|+.|++.+|+.++++|+++ .++.....+.. .+.+.+...+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 6999999999999999999999999999999943 23332221111 111122222222111
Q ss_pred hcccccccccCCCcEEEEEccccchhh-hhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 138 NRIGSKVIKGASSGVVIVDGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~-l~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
......+|++|.+..... .....|..||++++.+.+..|+++|.
T Consensus 67 ---------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 67 ---------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp ---------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred ---------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 234568999997662212 22345788999999886666666654
No 111
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.95 E-value=5.4e-10 Score=127.96 Aligned_cols=159 Identities=15% Similarity=0.153 Sum_probs=98.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----hh-----c----ccccCCCcccccHHHHHHHHH----HH
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~----~~-----~----~~~~~d~p~t~D~~lL~~~L~----~L 580 (899)
.+|||+|++||||||+|+.|++ +|+.++++|...+. .. . +..-.+..+++|...|.+.+- .+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 89999999988765 11 0 111122347888888877552 12
Q ss_pred hcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch
Q 002620 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (899)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~ 660 (899)
+.-+.+.+|..-..... .+.......++++|..+++...+...+|..|||++|.+.++.|...|+ |.+.+.
T Consensus 81 ~~le~i~hP~I~~~i~~-----~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR----g~s~~~ 151 (395)
T PRK03333 81 AVLNGIVHPLVGARRAE-----LIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQR----GMAEAD 151 (395)
T ss_pred HHHHHhhhHHHHHHHHH-----HHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcC----CCCHHH
Confidence 22223444442211111 111112224555555555667888999999999999999999987753 332222
Q ss_pred -hhHHhhccchhhhhcccccCcccEEEcCCCC
Q 002620 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (899)
Q Consensus 661 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (899)
...+....+ .++....||++|+|+.+
T Consensus 152 a~~ri~~Q~~-----~e~k~~~AD~vIdN~~s 178 (395)
T PRK03333 152 ARARIAAQAS-----DEQRRAVADVWLDNSGT 178 (395)
T ss_pred HHHHHHhcCC-----hHHHHHhCCEEEECCCC
Confidence 111111111 12335789999998865
No 112
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.95 E-value=2.5e-09 Score=104.68 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=87.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r 598 (899)
+|.|+|++||||||+|+.|+..++.+++++|....... ....-..+ +...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~~~~~---~~~~i~~~l~~~~~---------------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLASEVA---AIPEVRKALDERQR---------------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHHHHhc---ccHhHHHHHHHHHH----------------
Confidence 58899999999999999999999999999995543210 00000000 01111111111110
Q ss_pred CCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCcccc-ccccch--hhHHhhccchhhhhc
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-GCFMSQ--NDIMMTVFPMFQQHI 675 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~r-g~~~~~--~q~~~~v~p~~~~~I 675 (899)
.+ ....-+|+||+++.+- +.+.+|+.||+++|.+.+..|+..|+...+ |.+.+. ..+...-.+.+..|+
T Consensus 61 ----~~---~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 61 ----EL---AKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred ----HH---hhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 00 1123578899987542 245689999999999999999999874322 333332 233334455667777
Q ss_pred cccc-CcccEEEcC
Q 002620 676 EPHL-VHAHLKIRN 688 (899)
Q Consensus 676 ~p~~-~~ADivI~n 688 (899)
.|.. ..-|++|+.
T Consensus 133 ~~~~~~~~dl~i~~ 146 (147)
T cd02020 133 APLKLAEDAIVIDT 146 (147)
T ss_pred ccccCCCCcEEEeC
Confidence 7765 455677765
No 113
>PRK08118 topology modulation protein; Reviewed
Probab=98.95 E-value=2.7e-09 Score=108.08 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=69.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (899)
|..|.|.|++||||||+|+.|++.+|+++++.|.++.... +.. ...+.+.+.+..+.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-w~~---~~~~~~~~~~~~~~------------------- 57 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-WEG---VPKEEQITVQNELV------------------- 57 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-CcC---CCHHHHHHHHHHHh-------------------
Confidence 3469999999999999999999999999999999764211 100 01111111111111
Q ss_pred ccccccCCCcEEEEEccccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 142 SKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
. .+-+|+||.+.-. ......+|.+|||++|.++++.|.+.|..
T Consensus 58 ------~-~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 58 ------K-EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred ------c-CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 0 1248999988743 33446799999999999999999988853
No 114
>PRK06762 hypothetical protein; Provisional
Probab=98.95 E-value=9.6e-09 Score=103.41 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=82.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh--CCeEEecCccccccc-cCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~~-~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
+.+|+|+|++||||||+|+.|++.+ ++.+++.|.+.+.+. ..+.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~----------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYG----------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHH-----------------
Confidence 5689999999999999999999998 577889988876432 22233333433322221110
Q ss_pred cccccccccCCCcEEEEEccccch------hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhh
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALD------ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~---D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~ 209 (899)
......||+++.+.-. ..+...+ ...||+++|.+++++|...|....... ++.++.++...+
T Consensus 65 --------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~-~~~l~~~~~~~~ 135 (166)
T PRK06762 65 --------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFG-EDDMRRWWNPHD 135 (166)
T ss_pred --------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCC-HHHHHHHHhhcC
Confidence 1123578888886432 2233333 378999999999999999997533222 333333322222
Q ss_pred hhcCCCcCcCcEEEECCCC
Q 002620 210 KHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 210 k~Iep~~~~ADiII~N~~~ 228 (899)
. + ..|+.+|+++-.
T Consensus 136 ~---~--~~~~~~~~~~~~ 149 (166)
T PRK06762 136 T---L--GVIGETIFTDNL 149 (166)
T ss_pred C---c--CCCCeEEecCCC
Confidence 1 1 236777766633
No 115
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.94 E-value=8.3e-10 Score=108.37 Aligned_cols=151 Identities=22% Similarity=0.287 Sum_probs=97.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~ 597 (899)
++|.|+|++||||||+|+.|++.+|..++|.-.+|+...... + +++.-+.+.- -..|.+|+....
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~-g------msl~ef~~~A--------E~~p~iD~~iD~ 65 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARER-G------MSLEEFSRYA--------EEDPEIDKEIDR 65 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHc-C------CCHHHHHHHH--------hcCchhhHHHHH
Confidence 378999999999999999999999999999999998633211 1 2222222211 135777777655
Q ss_pred cCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccch-hhHHhhccchhhhh--
Q 002620 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQH-- 674 (899)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~-~q~~~~v~p~~~~~-- 674 (899)
|.- + ... .+-+|+||-++++- ++...|++||+.+|..+|..|...|+.......+.. ...-+.-...|.++
T Consensus 66 rq~--e--~a~-~~nvVlegrLA~Wi-~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~Yg 139 (179)
T COG1102 66 RQK--E--LAK-EGNVVLEGRLAGWI-VREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYG 139 (179)
T ss_pred HHH--H--HHH-cCCeEEhhhhHHHH-hccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 541 1 112 46789999998872 126789999999999999999999986544333322 00111112223333
Q ss_pred ccc-ccCcccEEEcCC
Q 002620 675 IEP-HLVHAHLKIRND 689 (899)
Q Consensus 675 I~p-~~~~ADivI~n~ 689 (899)
|.. +..-.|+||+.+
T Consensus 140 IDidDlSiyDLVinTs 155 (179)
T COG1102 140 IDIDDLSIYDLVINTS 155 (179)
T ss_pred CCCccceeeEEEEecc
Confidence 222 245678888754
No 116
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.90 E-value=1.7e-09 Score=126.49 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=90.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhc----ccccCCCcccccHHHHHHHHHHHh-----cCCce
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR-----NGRRT 586 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~----~~~~~d~p~t~D~~lL~~~L~~L~-----~g~~v 586 (899)
.+.+|+|+||+||||||+|+.|++.||..+++.|+||+.... ...+++++.++ ..+.+.+.... .+..+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCceE
Confidence 568999999999999999999999999999999999997321 22344444443 33333333222 23468
Q ss_pred ecccccccccccCCcc-----cee--------------eccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHh
Q 002620 587 KVPIFDLETGARSGFK-----ELE--------------VSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 647 (899)
Q Consensus 587 ~~P~yD~~~~~r~~~~-----~~~--------------~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri 647 (899)
.+|.||.+.+-|.+.- .+. ......-+|+||--++.- +.+..|++||++++.+.+..||.
T Consensus 361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtv-V~P~AdlKIfL~As~evRa~RR~ 439 (512)
T PRK13477 361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTH-VFPDAELKIFLTASVEERARRRA 439 (512)
T ss_pred EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeE-EcCCCCEEEEEECCHHHHHHHHH
Confidence 8999998875543210 000 001122489999887652 22447999999999999999987
Q ss_pred hcC
Q 002620 648 QRD 650 (899)
Q Consensus 648 ~RD 650 (899)
.+.
T Consensus 440 ~~l 442 (512)
T PRK13477 440 LDL 442 (512)
T ss_pred hhh
Confidence 663
No 117
>PRK07261 topology modulation protein; Provisional
Probab=98.88 E-value=9.7e-09 Score=104.43 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=71.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
.|+|.|++||||||+|+.|++.+|.++++.|.++.... + ...+.+.+...+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-~---~~~~~~~~~~~~~~~~--------------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-W---QERDDDDMIADISNFL--------------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-c---ccCCHHHHHHHHHHHH---------------------
Confidence 48999999999999999999999999999999754211 1 1112222333222211
Q ss_pred ccccCCCcEEEEEccccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 002620 144 VIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~ 192 (899)
.... +|+||.+.-. ....+.+|.+||+++|...++.|.++|...
T Consensus 57 ----~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 57 ----LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred ----hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 1123 8999998752 444568999999999999999999999754
No 118
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.86 E-value=1.1e-08 Score=101.58 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=68.6
Q ss_pred ccccccCCceeEeeeCCEEEEEEcceeecCCCccccceeEEEEeh---hHHHHHHhcCCceeEEEEEEEEEEEeCCEEEE
Q 002620 274 TEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVYGNLSVS 350 (899)
Q Consensus 274 ~dea~~~~~lRiR~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~v~K~R~~~~~~~~~v~ 350 (899)
.++++ |||..++++.||||||+.+ ++|.|+|..+ ....++. +.....++|.|..|.+++..++
T Consensus 33 ~~~~l-----RiR~~~~~~~lT~K~~~~~------~~R~E~E~~i~~~~~~~l~~---~~~~~~I~K~R~~~~~~~~~~~ 98 (148)
T cd07891 33 PERTV-----RVRIAGDRAYLTIKGPTNG------LSRYEFEYEIPLADAEELLA---LCEGPVIEKTRYRVPHGGHTWE 98 (148)
T ss_pred CCcEE-----EEEEeCCEEEEEEEeCCCC------ceEEEEEEeCCHHHHHHHHh---cCCCCeEEEEEEEEEeCCEEEE
Confidence 34566 9999999999999998653 5799999998 3333333 6778999999999999999999
Q ss_pred EeccCCCCCC--eEEEEecCHH
Q 002620 351 FETIDTLDET--FMVLRGTNRK 370 (899)
Q Consensus 351 lD~v~~lG~~--fvEiE~~~~~ 370 (899)
||.++|+|.+ |+|||..+++
T Consensus 99 lD~~~g~~~gL~~~EiE~~~e~ 120 (148)
T cd07891 99 VDVFHGENAGLVVAEIELPSED 120 (148)
T ss_pred EEEEcCCCCceEEEEEEcCCcc
Confidence 9999999875 9999997554
No 119
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.85 E-value=9.1e-09 Score=125.49 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=110.4
Q ss_pred cHHHHHHHHHHHHhcC-CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccc---cCCCCCCccHHHHHHHHH
Q 002620 44 GYYLLVKSIQELREKK-GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQ 119 (899)
Q Consensus 44 ~y~~l~~~i~~~~~~~-~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~p~s~d~~~l~~~L~ 119 (899)
.|....+.++.+.... ....+|+|+||+||||||+|+.|++.||..++++|.+|+.+. .....+..|.+.+.+.+.
T Consensus 423 syP~F~~~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (661)
T PRK11860 423 TFPDYFEALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALAR 502 (661)
T ss_pred CCCChHHHHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHh
Confidence 3444445554444322 234589999999999999999999999999999999999642 222233335555655544
Q ss_pred hhh----------cCCccc-----------------cccchhhhhhcccccccccCCCcEEEEEccccchhhhhcCCCEE
Q 002620 120 DLT----------EGKDTL-----------------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR 172 (899)
Q Consensus 120 ~l~----------~~~~i~-----------------~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~ 172 (899)
.+. +++++. +|.++......... .....-+|+||--+.. .+.+.+|++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~----~~~~~~~v~eGRdigt-vv~p~a~~k 577 (661)
T PRK11860 503 GLPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQRS----FRRLPGLVADGRDMGT-VIFPDAALK 577 (661)
T ss_pred cCCeeecCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHH----HhhCCCEEEECCCCcc-EECCCCCeE
Confidence 321 111111 12222211111111 1122357999988764 445679999
Q ss_pred EEEEcCHHHHHHHHHHhccCCc--cCHHHHHH----hhcHHhhhhcCCCcCcCc-EEEECCCCC
Q 002620 173 VAVVGGVHFSLISKVQYDIGDS--CSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRFVS 229 (899)
Q Consensus 173 I~Vda~~~~rl~R~i~RD~~~r--~~~e~~~~----~~~p~~~k~Iep~~~~AD-iII~N~~~~ 229 (899)
||++|+.++|.+||........ .+.+++.+ +-.....+.+.|.+...| ++|+|+.++
T Consensus 578 ifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~ 641 (661)
T PRK11860 578 VFLTASAEARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLT 641 (661)
T ss_pred EEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCC
Confidence 9999999999999987533222 34544444 334555667778776655 566777554
No 120
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=98.83 E-value=1.2e-08 Score=105.88 Aligned_cols=126 Identities=13% Similarity=0.069 Sum_probs=96.8
Q ss_pred ccccccceeccccCCCCcccccccCCceeEeeeCCEEEEEEcceeecCCCccccceeEEEEeh----h---------HHH
Q 002620 256 NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----M---------TLG 322 (899)
Q Consensus 256 ~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v----~---------~~~ 322 (899)
...+++.||+.|.++++..+.++ |||+.+++..+|+|+|.-...++ +.|.|+|+.| . +..
T Consensus 32 ~~~l~~~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~~~g~--~~R~E~e~~l~~~~~~l~~~~~~~~~~ 104 (197)
T cd07756 32 TRRLHNTYFDTPDLALRRAGIAL-----RVRREGGQWVQTLKTAGSVVGGL--HQRPEWEVPLPGPAPDLDLASILPDGE 104 (197)
T ss_pred eeeeeeeeeeCcChHHHhCCCEE-----EEEeeCCeEEEEEeeCCcCCCCc--ccceeEcccCCCCCcCcchhhcCCccc
Confidence 45688999999999999999999 99999999999999886443444 7999999999 1 556
Q ss_pred HHHhcC----CceeEEEEEEEEEEEeCC----EEEEEec--cC--CCCCCeEEEEec----CHHHHHHH----HHHcCCC
Q 002620 323 GLLDLG----YSVVASYKRASTYVVYGN----LSVSFET--ID--TLDETFMVLRGT----NRKTVGAE----ALRMGIN 382 (899)
Q Consensus 323 ~L~~LG----f~~~~~v~K~R~~~~~~~----~~v~lD~--v~--~lG~~fvEiE~~----~~~~v~~~----~~~Lgl~ 382 (899)
++.+++ +.|++++++.|+.|.+.. ++|++|. |. +--.|.-|||.. +.+.+.++ +...|+.
T Consensus 105 ~~~~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l~~~~~l~ 184 (197)
T cd07756 105 LLEALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRLAERLPLR 184 (197)
T ss_pred CHhhhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHHHHhCCcc
Confidence 788884 999999999999999844 9999999 43 222357777765 44455444 4456666
Q ss_pred CCccch
Q 002620 383 GPWITK 388 (899)
Q Consensus 383 ~~~~~~ 388 (899)
.+...|
T Consensus 185 ~~~~SK 190 (197)
T cd07756 185 LSNRSK 190 (197)
T ss_pred CCCcCH
Confidence 554443
No 121
>PRK08118 topology modulation protein; Reviewed
Probab=98.83 E-value=8.8e-09 Score=104.33 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=73.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r 598 (899)
-|.|.||+||||||+|+.|++.++..++++|+.++.. ++..... +...+.+..+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-----~w~~~~~---~~~~~~~~~~~~---------------- 58 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-----NWEGVPK---EEQITVQNELVK---------------- 58 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-----CCcCCCH---HHHHHHHHHHhc----------------
Confidence 4778999999999999999999999999999988631 1111111 112222222111
Q ss_pred CCccceeeccCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCcccccc
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~ 656 (899)
.+-+|+||.+... +...+.+|..||++.|.+.++.|.+.|....+|.
T Consensus 59 -----------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~ 106 (167)
T PRK08118 59 -----------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGK 106 (167)
T ss_pred -----------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCC
Confidence 1247899988743 4445679999999999999999999997765554
No 122
>PRK08356 hypothetical protein; Provisional
Probab=98.82 E-value=1.9e-08 Score=104.41 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=83.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC-CCCCCcc----HH------HHHHH--HHhhhcCCccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-NDLDSID----FD------ALVQN--LQDLTEGKDTL 128 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-~~p~s~d----~~------~l~~~--L~~l~~~~~i~ 128 (899)
..+|+|+|++||||||+|+.|++ +|+.+|++.+..+..... .....|. +. .+.+. +.....|.++.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 45799999999999999999965 899999999865432211 1111111 11 11110 00000011100
Q ss_pred cccchhhhhhcccccccccCCCcEEEEEccccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCcc---CHHHHHHh
Q 002620 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC---SLDSLIDS 203 (899)
Q Consensus 129 ~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~---~~e~~~~~ 203 (899)
. ...-+.. .....++++|.-... ..+......+|||+++.+++.+|...|+..... +.+++.+.
T Consensus 84 ~----~~~~~~~-------~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~ 152 (195)
T PRK08356 84 I----RLAVDKK-------RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF 152 (195)
T ss_pred H----HHHHHHh-------ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 0 0000000 112358999995554 234444578999999999999998888754432 33333221
Q ss_pred ---hcHHhhhhcCCCcCcCcEEEECC
Q 002620 204 ---IFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 204 ---~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
....+.. .-..+.||++|.|+
T Consensus 153 ~~~~~~l~~~--~~~~~~aD~vI~N~ 176 (195)
T PRK08356 153 DEWEEKLYHT--TKLKDKADFVIVNE 176 (195)
T ss_pred HHHHHHhhhh--hhHHHhCcEEEECC
Confidence 1221111 22346899999986
No 123
>PRK07261 topology modulation protein; Provisional
Probab=98.82 E-value=1.1e-08 Score=103.92 Aligned_cols=105 Identities=24% Similarity=0.255 Sum_probs=77.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r 598 (899)
.|+|.|++||||||||+.|+..++..++++|++++... +. ..+.+.+.+.+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----~~---~~~~~~~~~~~~~~~----------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----WQ---ERDDDDMIADISNFL----------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----cc---cCCHHHHHHHHHHHH-----------------
Confidence 47899999999999999999999999999999886321 11 112223333332211
Q ss_pred CCccceeeccCCcEEEEEeeccc-c-hhhhhcCCEEEEEEcCchhhHHHHhhcCcccccccc
Q 002620 599 SGFKELEVSEDCGVIIFEGVYAL-H-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~-~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~ 658 (899)
.... +|+||.|.. . +...+.+|..||++.|...++.|.+.|+...+|...
T Consensus 57 ---------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r 108 (171)
T PRK07261 57 ---------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTR 108 (171)
T ss_pred ---------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcC
Confidence 1123 899999974 2 555568999999999999999999999987777654
No 124
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=98.80 E-value=1.9e-08 Score=104.43 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=98.9
Q ss_pred cccccccccCCCCCCCCCcCCCc-eEEEEeeCCEEEEEEecccc---ccCcccccceeEEehh----------------h
Q 002620 728 QNFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLR---EGNFIIQPKVDFDISI----------------S 787 (899)
Q Consensus 728 ~~y~d~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~---d~~~~~~~~~~~~v~~----------------~ 787 (899)
....|.||..| +++++.++ |||+|+. .+.|+++++.. |+..+.+.+++.++.. .
T Consensus 30 ~~~~d~YfDtp----~~~l~~~~~~LRiR~~--~~~lk~~~~~~~~~~~~~~~~~E~~~~~~~~~~v~~~~~~~~~~~~~ 103 (196)
T cd07758 30 RTFHDTYYDTP----DNTLSLNDVWLRQRNG--QWELKIPPGGDPPTAGANTRYEELTGEAAIAAALRKLLGGALPSAGG 103 (196)
T ss_pred EEEeeEEEeCC----ChhHHhCCcEEEEECC--eEEEEecCCCCCCCCCCcceEEecccHHHHHHHHHHhcCCCCCcchh
Confidence 35679999999 78888877 9999975 78899998876 6777877777766622 1
Q ss_pred HHHHHHHcCceeeeeeeeeeEEeecC-cEEEEEecccCCCCceEEEe------------cccHHHHHHHHhhCCCCCCc
Q 002620 788 TVAGLLNLGYQAVAYIEASAFIYQDG-KILIEVDHLQDAPSPYLQIK------------GVDKEAVAAAGSTLKLDGSY 853 (899)
Q Consensus 788 ~~~~l~~lg~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~ 853 (899)
+...|.+|||++++.+++.|..|..+ +++|++|+++ +|..|+||. ...++.+.+++++||++..|
T Consensus 104 ~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg~~~~~ 181 (196)
T cd07758 104 LGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELISALMERYLW 181 (196)
T ss_pred HHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHHHhCCCccc
Confidence 34799999999999999999999999 9999999999 775698882 25677899999999998855
No 125
>PRK13949 shikimate kinase; Provisional
Probab=98.79 E-value=2.3e-08 Score=101.56 Aligned_cols=143 Identities=17% Similarity=0.108 Sum_probs=78.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCC---CCccHHHHHHHHHhhhcCCccccccchhhhhhc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p---~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (899)
..|.|.|++||||||+++.|++.+|+.++++|.+........-. .....+.+.+.... .
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~------------------~ 63 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERN------------------M 63 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHH------------------H
Confidence 45999999999999999999999999999999875422111000 01111111111000 0
Q ss_pred ccccccccCCCcEEEEEccccch----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCc-----cCHHHHHHhhcHHhhh
Q 002620 140 IGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-----CSLDSLIDSIFPLFRK 210 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r-----~~~e~~~~~~~p~~~k 210 (899)
... . ......||..|.+... ..+....+++|||+++.+...+|...+. ..+ .+.+.+.+.+...+.+
T Consensus 64 l~~--l-~~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~-~~RP~~~~~~~~~~~~~i~~l~~~ 139 (169)
T PRK13949 64 LHE--V-AEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK-QQRPLLKGKSDEELLDFIIEALEK 139 (169)
T ss_pred HHH--H-HhCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH
Confidence 000 0 0112466666665542 2344567999999999999777654321 122 1223333222223333
Q ss_pred hcCCCcCcCcEEEECCCC
Q 002620 211 HIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 211 ~Iep~~~~ADiII~N~~~ 228 (899)
+..-+.+ ||++|+.+..
T Consensus 140 R~~~Y~~-ad~~id~~~~ 156 (169)
T PRK13949 140 RAPFYRQ-AKIIFNADKL 156 (169)
T ss_pred HHHHHHh-CCEEEECCCC
Confidence 2222233 8999987744
No 126
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.77 E-value=4.9e-08 Score=120.18 Aligned_cols=163 Identities=15% Similarity=0.161 Sum_probs=98.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccc----cCC-CCC--CccHHHHHHHHHhhhcCCcccc-----
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGN-DLD--SIDFDALVQNLQDLTEGKDTLI----- 129 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~-~p~--s~d~~~l~~~L~~l~~~~~i~~----- 129 (899)
|.+|+|+|++||||||+|+.||+.||+.+++++.+|+... ..+ ..+ ..|.+.+.+.+..+..+..+.+
T Consensus 1 ~~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (712)
T PRK09518 1 MIIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPD 80 (712)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence 3579999999999999999999999999999999998632 111 121 2334444444443322111110
Q ss_pred ------------------------------ccchhhhhhcccccccccCC-------CcEEEEEccccchhhhhcCCCEE
Q 002620 130 ------------------------------PMFDYQQKNRIGSKVIKGAS-------SGVVIVDGTYALDARLRSLLDIR 172 (899)
Q Consensus 130 ------------------------------p~~d~~~~~~~~~~~~~~~~-------~~vVIvEG~~l~~~~l~~~~D~~ 172 (899)
|.+.......... .....+ ..-+|+||--+.. -+.+.+|++
T Consensus 81 ~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~-~~~~~~~~~~~~~~~~~v~eGRdigt-vv~p~a~~K 158 (712)
T PRK09518 81 SPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRA-YIAREASADSFSGGLGIVAEGRDITT-VVAPDAEVR 158 (712)
T ss_pred CcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhhcCccccccccCcEEEecCccce-EEecCCCeE
Confidence 1111111111000 000111 1258999988764 344678999
Q ss_pred EEEEcCHHHHHHHHHHhccCCccCHHHHHH----hhcHHhhhhcCCCcCcCc-EEEECCCCC
Q 002620 173 VAVVGGVHFSLISKVQYDIGDSCSLDSLID----SIFPLFRKHIEPDLHHAQ-IRINNRFVS 229 (899)
Q Consensus 173 I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~----~~~p~~~k~Iep~~~~AD-iII~N~~~~ 229 (899)
|||+|+.++|.+||..++.. .+.+++.+ +-.... +.+.|.....| ++|+++.++
T Consensus 159 ~~l~A~~~~Ra~Rr~~~~~~--~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~ 217 (712)
T PRK09518 159 ILLTAREEVRQARRSGQDRS--ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLD 217 (712)
T ss_pred EEEECCHHHHHHHHHHhhhc--CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCC
Confidence 99999999999999998754 34444433 334444 66788655544 666666544
No 127
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.77 E-value=1.8e-08 Score=101.49 Aligned_cols=114 Identities=22% Similarity=0.287 Sum_probs=69.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~ 597 (899)
++|+|+|++||||||+|+.|++.+|..+++.|++++.... ..+. +...+.... .. .|.++.....
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~-~~g~------~~~~~~~~~---~~-----~~~~~~~~~~ 65 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA-KMGL------DLIEFLNYA---EE-----NPEIDKKIDR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH-HcCC------CHHHHHHHH---hc-----CcHHHHHHHH
Confidence 3799999999999999999999999999999987764211 1110 111100000 00 0000000000
Q ss_pred cCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
.. .......+.+|+||.+..+ .+.+.+|+.|||++|.+++..|...|+.
T Consensus 66 ~i----~~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 66 RI----HEIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred HH----HHHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccC
Confidence 00 0001122466779988644 1245678999999999999999988874
No 128
>PLN02200 adenylate kinase family protein
Probab=98.75 E-value=3.3e-08 Score=105.53 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=74.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (899)
+.+.+|.|+|++||||||+|+.|++.+|+..|+++++.+.......+ +...+... +..|..+.-..........
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~---~~~~i~~~---~~~G~~vp~e~~~~~l~~~ 114 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSE---HGAMILNT---IKEGKIVPSEVTVKLIQKE 114 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccCh---hHHHHHHH---HHcCCCCcHHHHHHHHHHH
Confidence 35689999999999999999999999999999999986632222111 11222222 2233322211111111111
Q ss_pred ccccccccCCCcEEEEEccccch-------hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 140 IGSKVIKGASSGVVIVDGTYALD-------ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-------~~l~~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
.. .....-+|+||..... ..+....|.+||++++.++.++|...|..
T Consensus 115 l~-----~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 115 ME-----SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred Hh-----cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 11 1112458999964332 11223579999999999999999888853
No 129
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.73 E-value=2.2e-08 Score=100.93 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=36.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (899)
+.+..|.|+|++||||||+|+.|++.+|+.+++.|.+...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~ 41 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEA 41 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 4566899999999999999999999999999999997654
No 130
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.72 E-value=2.5e-08 Score=101.51 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=77.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCccccccccCCCC--CCccHHHHHHHHHhhhcCCccccccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPMF 132 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~p--~s~d~~~l~~~L~~l~~~~~i~~p~~ 132 (899)
.++.+|.++|++||||||+|+.|++.++ +.+++.|.++..+...+.. ...+.......+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~------------ 72 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAK------------ 72 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHH------------
Confidence 4567999999999999999999999885 6778888875533222110 00000000001110
Q ss_pred hhhhhhcccccccccCCCcEEEEEccccch---hhhhc--CCCEEEEEEcCHHHHHHHHHHh--ccCCccCHHHHHHhhc
Q 002620 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRS--LLDIRVAVVGGVHFSLISKVQY--DIGDSCSLDSLIDSIF 205 (899)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~--~~D~~I~Vda~~~~rl~R~i~R--D~~~r~~~e~~~~~~~ 205 (899)
.. ......||++|...+. ...+. .-++.||++++.++..+|...+ .......+.+++..+.
T Consensus 73 -----------~l-~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~ 140 (176)
T PRK05541 73 -----------FL-ADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDI 140 (176)
T ss_pred -----------HH-HhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCC
Confidence 00 1223578888876553 11111 1147899999999988775421 0011123333334444
Q ss_pred HHhhhhcCCCcCcCcEEEECCC
Q 002620 206 PLFRKHIEPDLHHAQIRINNRF 227 (899)
Q Consensus 206 p~~~k~Iep~~~~ADiII~N~~ 227 (899)
|.+.. .||++|+|+-
T Consensus 141 ~~~~~-------~Ad~vI~~~~ 155 (176)
T PRK05541 141 PFDEP-------KADLVIDNSC 155 (176)
T ss_pred cccCC-------CCCEEEeCCC
Confidence 44443 4899999984
No 131
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=98.71 E-value=4.1e-08 Score=99.94 Aligned_cols=101 Identities=8% Similarity=-0.021 Sum_probs=78.7
Q ss_pred ccccccccceeccccCCCCcccccccCCceeEee--eCCEEEEEEcceeecCCCccccceeEEEEeh----hHH------
Q 002620 254 QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL------ 321 (899)
Q Consensus 254 ~~~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~--~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v----~~~------ 321 (899)
.....+.+.||+.|.+. ..+.++ |||. .++.+.+|+|+|.-. +.|.|+|+.| .+.
T Consensus 29 ~~~~~~~~~YfDT~d~~--l~~~~l-----rlR~r~~~~~~~~TlK~~~~~------~~r~E~e~~l~~~~~~~~~~~~~ 95 (174)
T cd07374 29 PETVQLRAIYFDTPDLR--LARAGL-----RLRRRTGGADAGWHLKLPGGI------SRRTEVRAPLGDAAAVAPLLLAA 95 (174)
T ss_pred ccceeeeeeEecCccch--hhhCCc-----EEEEEcCCCccEEEEEccCCC------CCceEEEeecCCccCCcccccch
Confidence 34567899999998873 334455 6664 455899999987532 5799999999 222
Q ss_pred ----HHHHhcCCceeEEEEEEEEEEEeC-----CEEEEEeccCC-------CCCCeEEEEecC
Q 002620 322 ----GGLLDLGYSVVASYKRASTYVVYG-----NLSVSFETIDT-------LDETFMVLRGTN 368 (899)
Q Consensus 322 ----~~L~~LGf~~~~~v~K~R~~~~~~-----~~~v~lD~v~~-------lG~~fvEiE~~~ 368 (899)
.++..+||.|++++.+.|++|.++ .++|+||.++. .++ ++|+|.++
T Consensus 96 ~~~~~~~~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~-e~E~El~~ 157 (174)
T cd07374 96 ALVLAVTRGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQY-WREVEVEL 157 (174)
T ss_pred hheeeecCCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceE-EEEEEEEE
Confidence 356779999999999999999987 48999999986 677 99999983
No 132
>PRK01184 hypothetical protein; Provisional
Probab=98.69 E-value=3.1e-08 Score=101.45 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=83.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~ 597 (899)
.+|+|+|++||||||+|+ +++.+|+.++++||..+..-.. .+...+. +.+.+....++.. .....+...++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~-~~~~~~~----~~~g~~~~~~~~~--~~~~~~~~~~~~ 73 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK-RGLEPTD----ENIGKVAIDLRKE--LGMDAVAKRTVP 73 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH-cCCCCCc----HHHHHHHHHHHHH--HChHHHHHHHHH
Confidence 589999999999999987 6778999999999887653211 1111111 1111111111110 000000001111
Q ss_pred cCCccceeeccCCcEEEEEeecccc--hhhhhcCC---EEEEEEcCchhhHHHHhhcCccccccccchhhHHhhccchhh
Q 002620 598 RSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQ 672 (899)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~--~~l~~~~D---~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~ 672 (899)
.. . ..+..++|++|+.... ..+++.++ ..|+++++.+.++.|...|+....+.+.+. +....... .
T Consensus 74 ~i-----~-~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~--~~~r~~~q-~ 144 (184)
T PRK01184 74 KI-----R-EKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEE--LEERDERE-L 144 (184)
T ss_pred HH-----H-hcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHH--HHHHHHHH-h
Confidence 11 0 0235789999985432 34555555 899999999999999988763221212111 11111000 0
Q ss_pred hh-cccccCcccEEEcCCC
Q 002620 673 QH-IEPHLVHAHLKIRNDF 690 (899)
Q Consensus 673 ~~-I~p~~~~ADivI~n~~ 690 (899)
.+ +.+....||++|+|+.
T Consensus 145 ~~~~~~~~~~ad~vI~N~~ 163 (184)
T PRK01184 145 SWGIGEVIALADYMIVNDS 163 (184)
T ss_pred ccCHHHHHHhcCEEEeCCC
Confidence 00 1223467999999864
No 133
>PRK04182 cytidylate kinase; Provisional
Probab=98.67 E-value=5.6e-08 Score=98.55 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=67.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~ 597 (899)
++|+|+|++||||||+|+.|++.+|..++++|++++..... .+. +...+.+. +. ..|.++.....
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~-~g~------~~~~~~~~------~~--~~~~~~~~~~~ 65 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKE-RGM------SLEEFNKY------AE--EDPEIDKEIDR 65 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHH-cCC------CHHHHHHH------hh--cCchHHHHHHH
Confidence 37999999999999999999999999999998887752211 111 11111100 00 01111111110
Q ss_pred cCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcC
Q 002620 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
.. .........+|++|.+..+ -+.+..++.||+++|.+.++.|...|+
T Consensus 66 ~~----~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 66 RQ----LEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred HH----HHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhcc
Confidence 00 0011022456778877643 112337899999999999999988775
No 134
>PRK00625 shikimate kinase; Provisional
Probab=98.66 E-value=9e-08 Score=97.54 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=79.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
.|.|+|.+||||||+++.||+.+|++++|+|.+...........+ ..+.+.+ .|. ..|.........
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~-i~eif~~------~Ge----~~fr~~E~~~l~-- 68 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSS-PKEIYQA------YGE----EGFCREEFLALT-- 68 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCC-HHHHHHH------HCH----HHHHHHHHHHHH--
Confidence 489999999999999999999999999999997543222110000 0000000 000 000000000000
Q ss_pred ccccCCCcEEE-EEccccchhhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCc----cCHHHHHHhhcHHhhhhcCCC
Q 002620 144 VIKGASSGVVI-VDGTYALDARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPD 215 (899)
Q Consensus 144 ~~~~~~~~vVI-vEG~~l~~~~l~---~~~D~~I~Vda~~~~rl~R~i~RD~~~r----~~~e~~~~~~~p~~~k~Iep~ 215 (899)
... . ...|| ..|.....+... .....+||++++.+...+|...|..... ...++.+++..|.|++
T Consensus 69 ~l~-~-~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~----- 141 (173)
T PRK00625 69 SLP-V-IPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRS----- 141 (173)
T ss_pred Hhc-c-CCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHH-----
Confidence 001 1 22344 343333333222 3346899999999999988887765432 2334444555666655
Q ss_pred cCcCcEEEECC
Q 002620 216 LHHAQIRINNR 226 (899)
Q Consensus 216 ~~~ADiII~N~ 226 (899)
.||++|+.+
T Consensus 142 --~ad~~i~~~ 150 (173)
T PRK00625 142 --IADYIFSLD 150 (173)
T ss_pred --HCCEEEeCC
Confidence 799998766
No 135
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=98.65 E-value=1.2e-07 Score=93.98 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=67.8
Q ss_pred cccccCCceeEeeeCCEEEEEEcceeecCCCccccceeEEEEeh---hHHHHHHhcCCceeEEEEEEEEEEEe-CCEEEE
Q 002620 275 EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVY-GNLSVS 350 (899)
Q Consensus 275 dea~~~~~lRiR~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~v~K~R~~~~~-~~~~v~ 350 (899)
++++ |||..++++.|||||+. + ++|.|+|..+ .+.++|. |.....++|.|..|.+ ++..++
T Consensus 32 ~~~v-----RvR~~~~~~~lT~K~~~----~---~~R~E~E~~I~~~~~~~ll~---~~~~~~I~K~R~~~~~~~~~~~~ 96 (146)
T cd07761 32 NPEV-----RIRSKGEKYILTVKSGG----G---LVREEIEIEIDKKEFEHLLE---KTEGNLIEKTRYLIPLEGGLLAE 96 (146)
T ss_pred CcEE-----EEEEECCEEEEEEEcCC----C---cceEEEEEeCCHHHHHHHHH---hCCCCeEEEEEEEEEeCCCcEEE
Confidence 4667 99999999999999874 5 6999999999 5666664 7888899999999999 999999
Q ss_pred EeccCCCCC--CeEEEEecCH
Q 002620 351 FETIDTLDE--TFMVLRGTNR 369 (899)
Q Consensus 351 lD~v~~lG~--~fvEiE~~~~ 369 (899)
||.++|.+. .|+|||..++
T Consensus 97 vD~~~g~~~gL~~~EvE~~se 117 (146)
T cd07761 97 LDVFEGRLTGLVYAEVEFPSE 117 (146)
T ss_pred EEEEcCCCCCeEEEEEEcCCc
Confidence 999999872 2888888653
No 136
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.64 E-value=3.2e-08 Score=105.08 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=74.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcC-----Cceecccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNG-----RRTKVPIF 591 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g-----~~v~~P~y 591 (899)
+.+|+|+|++||||||+|+.|++.+|...++.|++|+.........+-+ -.|.+.+.+.+..+... ....+...
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVD-LEDEEALVALAAHLDISFESDPGGQRVFLN 82 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCC-CCCHHHHHHHHhcCCeEEecCCCcceEEEC
Confidence 5789999999999999999999999999999999998732211111111 11233333322221110 00001111
Q ss_pred cccccc-------------cCCccce--------eeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcC
Q 002620 592 DLETGA-------------RSGFKEL--------EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 592 D~~~~~-------------r~~~~~~--------~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
+..... ......+ .......-+|+||.+.... +.+..+++||++++.+.|..||..+.
T Consensus 83 ~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~-vl~~a~~~ifl~a~~e~R~~Rr~~~~ 161 (225)
T PRK00023 83 GEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTV-VFPDAELKIFLTASAEERAERRYKEL 161 (225)
T ss_pred CcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheE-EeCCCCEEEEEECCHHHHHHHHHHHH
Confidence 100000 0000000 0001224589999985543 33337999999999999988877664
No 137
>PRK03839 putative kinase; Provisional
Probab=98.62 E-value=1.8e-07 Score=95.51 Aligned_cols=97 Identities=22% Similarity=0.322 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccC---CCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG---NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~---~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (899)
.|.|+|++||||||+|+.|++.+|+.++++|++++...-. .......+..+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 61 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEE-------------------- 61 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHH--------------------
Confidence 5899999999999999999999999999999986532110 00111112222221111
Q ss_pred cccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
. .. ...+|++|.+.. + ...|++||++++.+...+|...|.
T Consensus 62 ---~--~~-~~~vIidG~~~~---l-~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 62 ---E--FK-EKNVVLDGHLSH---L-LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ---h--cc-CCCEEEEecccc---c-cCCCEEEEEECCHHHHHHHHHHcC
Confidence 0 01 123688886532 2 247999999999999988887764
No 138
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.62 E-value=2.3e-07 Score=94.79 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=70.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
+|.|.|++||||||+|+.|++.+|+.+|+++++.+.....+.+ . -..+.+.+ ..|..+..............
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~--~-~~~~~~~~---~~g~~~~~~~~~~ll~~~~~-- 72 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSE--N-GELIESMI---KNGKIVPSEVTVKLLKNAIQ-- 72 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCCh--H-HHHHHHHH---HCCCcCCHHHHHHHHHHHHh--
Confidence 5899999999999999999999999999998876533221111 0 01111111 12222111111111111111
Q ss_pred ccccCCCcEEEEEccccch---h---hhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 144 VIKGASSGVVIVDGTYALD---A---RLR---SLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~---~l~---~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
... ..-+|+||..--. . .+. ...|+.||+++|.+..++|...|..
T Consensus 73 --~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 73 --ADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred --ccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 111 4568999974422 1 111 2578999999999999999998864
No 139
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=95.00 Aligned_cols=102 Identities=23% Similarity=0.299 Sum_probs=77.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh--------CCeEEecCccccccc----------------cCCCCCCccHHHHHH
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI--------GCTLISMENYRVGVD----------------EGNDLDSIDFDALVQ 116 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L--------g~~vI~~D~~~~~~~----------------~~~~p~s~d~~~l~~ 116 (899)
-|++||+.||.||||||++-+|-..+ .+..++.|+||.... -++-++++|...+.+
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~e 109 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVE 109 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHH
Confidence 38999999999999999999886544 257799999987432 245679999999999
Q ss_pred HHHhhhcCC----ccccccchhhhhhcccc-----cccccCCCcEEEEEccccch
Q 002620 117 NLQDLTEGK----DTLIPMFDYQQKNRIGS-----KVIKGASSGVVIVDGTYALD 162 (899)
Q Consensus 117 ~L~~l~~~~----~i~~p~~d~~~~~~~~~-----~~~~~~~~~vVIvEG~~l~~ 162 (899)
.|..+.++. .+..|.|++......+. ......+..++|+||.++.-
T Consensus 110 vLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF 164 (282)
T KOG2878|consen 110 VLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGF 164 (282)
T ss_pred HHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccc
Confidence 998876653 38889999876543322 22334467899999998854
No 140
>PRK04040 adenylate kinase; Provisional
Probab=98.60 E-value=2.3e-07 Score=95.92 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=81.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh--CCeEEecCcccccccc-CCCCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~~~-~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
|.+|+|+|++||||||+++.|++.+ +..+++.++++..... .+... +.+.+.+. ... ....+......
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~--~~d~~r~l----~~~---~~~~~~~~a~~ 72 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVE--HRDEMRKL----PPE---EQKELQREAAE 72 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCC--CHHHHhhC----Chh---hhHHHHHHHHH
Confidence 5789999999999999999999999 8999999998654321 11111 12222211 000 00001111111
Q ss_pred cccccccccCCCcEEEEEccccch------h-----hhh-cCCCEEEEEEcCHHHHHHHHHH---hccCCccCHHHHHHh
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALD------A-----RLR-SLLDIRVAVVGGVHFSLISKVQ---YDIGDSCSLDSLIDS 203 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~------~-----~l~-~~~D~~I~Vda~~~~rl~R~i~---RD~~~r~~~e~~~~~ 203 (899)
. .........+|++|-+.+. + .+. -..|.+|+++++++..++|++. |+... .+.+.+...
T Consensus 73 ~----i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~-es~e~I~~~ 147 (188)
T PRK04040 73 R----IAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDV-ETEEDIEEH 147 (188)
T ss_pred H----HHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCC-CCHHHHHHH
Confidence 1 1111234457888866422 1 112 2458999999999988888875 22111 222222221
Q ss_pred h--cHHhhhhcCCCcCcCcEEEECC
Q 002620 204 I--FPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 204 ~--~p~~~k~Iep~~~~ADiII~N~ 226 (899)
+ ...+..++.......+.+|.|+
T Consensus 148 ~~~a~~~a~~~a~~~g~~~~iI~N~ 172 (188)
T PRK04040 148 QEMNRAAAMAYAVLTGATVKIVENR 172 (188)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECC
Confidence 1 1122222223344578888888
No 141
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.59 E-value=3.8e-07 Score=92.83 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=78.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCC---CccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD---SIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~---s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
+..|.|.|++||||||+++.|++.+|..++++|.........+-.. ......++.. ...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~------------------e~~ 65 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDR------------------EEK 65 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHH------------------HHH
Confidence 3469999999999999999999999999999998533222110000 0000111100 000
Q ss_pred cccccccccCCCcEEEEEccccc-hh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCC---ccCH----HHHHHhhcHH
Q 002620 139 RIGSKVIKGASSGVVIVDGTYAL-DA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGD---SCSL----DSLIDSIFPL 207 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~-~~---~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~---r~~~----e~~~~~~~p~ 207 (899)
.... . .. ...+++.-|.... .+ .+....+.+|||+++.+.++.|...+.... .... +.+.+...|.
T Consensus 66 ~l~~-l-~~-~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~ 142 (172)
T PRK05057 66 VINE-L-TE-KQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPL 142 (172)
T ss_pred HHHH-H-Hh-CCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0000 0 00 1224444333332 22 333456899999999999988875432211 1122 2233344566
Q ss_pred hhhhcCCCcCcCcEEEECCCCC
Q 002620 208 FRKHIEPDLHHAQIRINNRFVS 229 (899)
Q Consensus 208 ~~k~Iep~~~~ADiII~N~~~~ 229 (899)
|.+ .||++|+++..+
T Consensus 143 Y~~-------~Ad~~idt~~~s 157 (172)
T PRK05057 143 YEE-------IADVTIRTDDQS 157 (172)
T ss_pred HHh-------hCCEEEECCCCC
Confidence 655 699999988443
No 142
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.59 E-value=1.3e-07 Score=93.52 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=76.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~ 144 (899)
|.|+|++||||||+|+.|++.+|+..++.|.+........ ...+.+.. +. ..+........ . .
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~------~~~~~~~~-----~~----~~~~~~e~~~~-~-~ 64 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMS------IPEIFAEE-----GE----EGFRELEREVL-L-L 64 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCC------HHHHHHHH-----CH----HHHHHHHHHHH-H-H
Confidence 7899999999999999999999999999999865433221 00110000 00 00000000000 0 0
Q ss_pred cccCCCcEEEEEcccc-chh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCc---cC---HHHHHHhhcHHhhhhcCC
Q 002620 145 IKGASSGVVIVDGTYA-LDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CS---LDSLIDSIFPLFRKHIEP 214 (899)
Q Consensus 145 ~~~~~~~vVIvEG~~l-~~~---~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r---~~---~e~~~~~~~p~~~k~Iep 214 (899)
. ......||..|... ... ........+|||++|.+.+.+|...|+.... .+ .........+.|.+
T Consensus 65 ~-~~~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~---- 139 (154)
T cd00464 65 L-LTKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYRE---- 139 (154)
T ss_pred H-hccCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHH----
Confidence 0 01123444444322 222 1223356899999999999888877752221 11 23333334455544
Q ss_pred CcCcCcEEEECC
Q 002620 215 DLHHAQIRINNR 226 (899)
Q Consensus 215 ~~~~ADiII~N~ 226 (899)
.||++++.+
T Consensus 140 ---~ad~~i~~~ 148 (154)
T cd00464 140 ---VADLTIDTD 148 (154)
T ss_pred ---hCcEEEECC
Confidence 699999877
No 143
>PRK06762 hypothetical protein; Provisional
Probab=98.56 E-value=2.4e-07 Score=93.31 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=71.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l--~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (899)
|.+|+|+|++||||||+|+.|++.+ ++.+++.|.+..... ..++.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~---~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML---RVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc---cccCCCCCcCHHHHHHHHHHH--------------
Confidence 6789999999999999999999998 466788887764311 112344444455444432221
Q ss_pred ccccCCccceeeccCCcEEEEEeecccc------hhhhhcCC---EEEEEEcCchhhHHHHhhcCc
Q 002620 595 TGARSGFKELEVSEDCGVIIFEGVYALH------PEIRKSLD---LWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 595 ~~~r~~~~~~~~~~~~dVVIvEG~~~~~------~~l~~~~D---~~I~vd~~~d~rl~Rri~RD~ 651 (899)
.....++|+++.+.-. ..+....+ ..||+++|.++++.|...|+.
T Consensus 65 ------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 65 ------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred ------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 1124677888886421 23333333 789999999999999988864
No 144
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.55 E-value=4.1e-07 Score=93.82 Aligned_cols=158 Identities=9% Similarity=0.012 Sum_probs=82.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCC-----ccHHHHHHHHHhhhcCCccccccchh
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDS-----IDFDALVQNLQDLTEGKDTLIPMFDY 134 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s-----~d~~~l~~~L~~l~~~~~i~~p~~d~ 134 (899)
.++++|.|+||||||||||++.|.+.+.-...+...--+... .+..+. ...+.+.+ .+..+.-+.+-.|..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r-~gE~~G~dY~fvs~~~F~~---~i~~~~f~e~~~~~g 77 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR-PGDEEGKTYFFLTIEEFKK---GIADGEFLEWAEVHD 77 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCC-CCCCCCceeEeCCHHHHHH---HHHcCCeEEEEEECC
Confidence 357899999999999999999998754211111111111111 111111 11222222 222333333322221
Q ss_pred hhhhcc-cccccccCCCcEEEEEccccchhhhhcCC-C--EEEEEEcC-HHHHHHHHHHhccCCccCHHHHHHhhcHHhh
Q 002620 135 QQKNRI-GSKVIKGASSGVVIVDGTYALDARLRSLL-D--IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (899)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D--~~I~Vda~-~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~ 209 (899)
..+.-. ...........++|++.-.-....+...+ + +.|||.+| .+....|+..|+.....+++.+++.+.+...
T Consensus 78 ~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~ 157 (186)
T PRK14737 78 NYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELD 157 (186)
T ss_pred eeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 111110 00011123456777774433333344333 3 68999985 5777777778765444556666666555444
Q ss_pred hhcCCCcCcCcEEEECC
Q 002620 210 KHIEPDLHHAQIRINNR 226 (899)
Q Consensus 210 k~Iep~~~~ADiII~N~ 226 (899)
. ...+|.||.|+
T Consensus 158 ~-----~~~~D~vI~N~ 169 (186)
T PRK14737 158 E-----ANEFDYKIIND 169 (186)
T ss_pred h-----hccCCEEEECc
Confidence 3 57899999998
No 145
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.53 E-value=5.5e-07 Score=92.05 Aligned_cols=119 Identities=16% Similarity=0.075 Sum_probs=71.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccc--hhhhhhc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF--DYQQKNR 139 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~--d~~~~~~ 139 (899)
..+|+|.|++||||||+|+.|++.+|...++++++.+.......+ ....+...+. .+. ..|.- .......
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~---~~~--~~~~~~~~~~l~~~ 74 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSE---RGKQLQAIME---SGD--LVPLDTVLDLLKDA 74 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH---HHHHHHHHHH---CCC--CCCHHHHHHHHHHH
Confidence 458999999999999999999999999999999876532111111 0111111111 121 11210 0001111
Q ss_pred ccccccccCCCcEEEEEccccch---hhh---hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 140 IGSKVIKGASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~---~~l---~~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
... .......+|+||..-.. ..+ ....|+.||++++.+...+|...|..
T Consensus 75 ~~~---~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 75 MVA---ALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred HHc---ccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 110 12334578899964321 111 13578999999999999999988864
No 146
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.51 E-value=4.4e-07 Score=93.33 Aligned_cols=117 Identities=20% Similarity=0.081 Sum_probs=70.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~ 144 (899)
|.|.|++||||||+|+.|++.+|+.+|++|++.+.......+ ....+.+.+. .+..+...............
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~l~~~~l~~-- 73 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTE---LGKKAKEYID---SGKLVPDEIVIKLLKERLKK-- 73 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCCh---HHHHHHHHHH---cCCccCHHHHHHHHHHHHhc--
Confidence 789999999999999999999999999999986643222111 1111122211 12221111111111111111
Q ss_pred cccCCCcEEEEEccccch------hhhhc---CCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 145 IKGASSGVVIVDGTYALD------ARLRS---LLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 145 ~~~~~~~vVIvEG~~l~~------~~l~~---~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
.....-+|++|...-. ..... ..|+.|+++++.++.++|...|..
T Consensus 74 --~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 74 --PDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred --ccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 1123457888853321 12222 679999999999999999998874
No 147
>PRK14528 adenylate kinase; Provisional
Probab=98.51 E-value=7.2e-07 Score=91.98 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=72.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHh-hhcCCccccccchhhhhhcc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRI 140 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~ 140 (899)
|..|.|.|++||||||+|+.|++.+|++++++|++.+.....+.+ +...+.. +..|..+.-.........+.
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~-------~g~~~~~~~~~g~lvp~~~~~~~~~~~l 73 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTA-------MGIEAKRYMDAGDLVPDSVVIGIIKDRI 73 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCH-------HHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999986643222211 1111121 12222211111111222221
Q ss_pred cccccccCCCcEEEEEccccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 141 GSKVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
.. .....-+|+||.---. ..+ ....|.+|++++|.+..+.|...|..
T Consensus 74 ~~----~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 74 RE----ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred hC----cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 11 1123468889963211 111 13589999999999999999998854
No 148
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.51 E-value=4.7e-07 Score=90.94 Aligned_cols=168 Identities=18% Similarity=0.322 Sum_probs=121.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchh--h-----------cccccCCCcccccHHHHHHHHH
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSE--Q-----------VKDFKYDDFSSLDLSLLSKNIS 578 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~--~-----------~~~~~~d~p~t~D~~lL~~~L~ 578 (899)
-.||+|+|.||+|-||.+.+....++ +..+.-|.|++-. + -..+.+-.|.+-|+..|.+.+.
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 34799999999999999998887763 5678899997641 1 1233455789999999999988
Q ss_pred HHhcCCceeccc----------ccccccccCCccceeeccCCcEEEEEeecccc----hhhhhcCCEEEEEEcCchhhHH
Q 002620 579 DIRNGRRTKVPI----------FDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI 644 (899)
Q Consensus 579 ~L~~g~~v~~P~----------yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~----~~l~~~~D~~I~vd~~~d~rl~ 644 (899)
.--....-.... |+...|.-.+|.. ..++.|++..||.+.+- -.+.+.+|+.|=+..-......
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~--lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWI 162 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQP--LPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWI 162 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCCCccc--CCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHH
Confidence 764422222222 2222333343322 24668999999999864 4578899999999888888899
Q ss_pred HHhhcCccccccccch-hhHHhhccchhhhhcccccCcccEEE
Q 002620 645 SRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKI 686 (899)
Q Consensus 645 Rri~RD~~~rg~~~~~-~q~~~~v~p~~~~~I~p~~~~ADivI 686 (899)
..+.||..+||.+.+. .+-.-...+.|..||-|.-...|+-+
T Consensus 163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINF 205 (289)
T COG3954 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINF 205 (289)
T ss_pred HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCccccccccce
Confidence 9999999999998775 23333456789999999887777643
No 149
>PRK13946 shikimate kinase; Provisional
Probab=98.50 E-value=3e-07 Score=94.54 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=77.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (899)
+..|.++|++||||||+++.||+.||++++++|......... . ...+.+.. +. +.+.........
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~-~-----~~e~~~~~-----ge----~~~~~~e~~~l~ 74 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARM-T-----IAEIFAAY-----GE----PEFRDLERRVIA 74 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCC-C-----HHHHHHHH-----CH----HHHHHHHHHHHH
Confidence 457999999999999999999999999999999854432211 0 00010000 00 000000000000
Q ss_pred ccccccCCCcEEEEEcccc--chh--hhhcCCCEEEEEEcCHHHHHHHHHHhccCC---ccCHHHHHHhhcHHhhhhcCC
Q 002620 142 SKVIKGASSGVVIVDGTYA--LDA--RLRSLLDIRVAVVGGVHFSLISKVQYDIGD---SCSLDSLIDSIFPLFRKHIEP 214 (899)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l--~~~--~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~---r~~~e~~~~~~~p~~~k~Iep 214 (899)
. .. .....||..|... ... .+....+++||+++|.+.+++|...|.... ..+..+.++++......
T Consensus 75 ~-l~--~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~---- 147 (184)
T PRK13946 75 R-LL--KGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYP---- 147 (184)
T ss_pred H-HH--hcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHH----
Confidence 0 11 1224566655433 221 121235789999999999999887765321 12333334333221111
Q ss_pred CcCcCcEEEECCC
Q 002620 215 DLHHAQIRINNRF 227 (899)
Q Consensus 215 ~~~~ADiII~N~~ 227 (899)
....+|++|+++.
T Consensus 148 ~y~~~dl~i~~~~ 160 (184)
T PRK13946 148 VYAEADLTVASRD 160 (184)
T ss_pred HHHhCCEEEECCC
Confidence 1124799987663
No 150
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.49 E-value=1.4e-07 Score=99.51 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=75.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcc--cccCCCcccccHHHHHHHHHHHh------cC-----
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR------NG----- 583 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~--~~~~d~p~t~D~~lL~~~L~~L~------~g----- 583 (899)
+++|+|+||+||||||+++.|+..++..+++.|++|+..... ..+.+.+ |-..+.+.+..+. .|
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLT---SEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCC---CHHHHHHHHHhCCCEEecCCCceeEE
Confidence 468999999999999999999999999999999999753211 1111111 2222222222210 00
Q ss_pred --------------------CceecccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhH
Q 002620 584 --------------------RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL 643 (899)
Q Consensus 584 --------------------~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl 643 (899)
....+|........+. ......+-+|+||.+.... +.+..|++||++++.+.|.
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q-----r~~a~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ-----QALAKNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERA 152 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH-----HHHhhcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHH
Confidence 0011111111111100 0001123499999986653 2233889999999999999
Q ss_pred HHHhhcCcc
Q 002620 644 ISRVQRDKS 652 (899)
Q Consensus 644 ~Rri~RD~~ 652 (899)
.||..|...
T Consensus 153 ~Rr~~~~~~ 161 (217)
T TIGR00017 153 KRRYKQLQI 161 (217)
T ss_pred HHHHHHHhc
Confidence 999888643
No 151
>PRK14527 adenylate kinase; Provisional
Probab=98.48 E-value=7e-07 Score=92.26 Aligned_cols=140 Identities=18% Similarity=0.084 Sum_probs=79.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhh-hcCCccccccchhhhhhc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNR 139 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~ 139 (899)
.+.+|.|.|++||||||+|+.|++.+|+..+++|++.+.....+.+ +...+..+ ..+..+............
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~l~~~~ 77 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTE-------LGQRAKPIMEAGDLVPDELILALIRDE 77 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcH-------HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999999999999999986643222111 11112221 112211111111111111
Q ss_pred ccccccccCCCcEEEEEccccchh----------hhhcCCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHHhhcHH
Q 002620 140 IGSKVIKGASSGVVIVDGTYALDA----------RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPL 207 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~~----------~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r--~~~e~~~~~~~p~ 207 (899)
.. ..+ ..-+|+||..--.. .....+|.++|+++|.++++.|...|..... .+-++.+.+.+..
T Consensus 78 l~----~~~-~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~ 152 (191)
T PRK14527 78 LA----GME-PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQV 152 (191)
T ss_pred Hh----cCC-CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHH
Confidence 11 111 23488898643211 1113478899999999999999998864322 2223444444444
Q ss_pred hhhhc
Q 002620 208 FRKHI 212 (899)
Q Consensus 208 ~~k~I 212 (899)
|.+..
T Consensus 153 y~~~~ 157 (191)
T PRK14527 153 YREQT 157 (191)
T ss_pred HHHHh
Confidence 44433
No 152
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.48 E-value=4.4e-07 Score=112.26 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=95.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccc----cCC-CC------CCccHHHHH-----HHHHhhh----
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGN-DL------DSIDFDALV-----QNLQDLT---- 122 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~-~p------~s~d~~~l~-----~~L~~l~---- 122 (899)
++|+|+||+||||||+|+.||+.||+.+|+++.+||.+. ..+ ++ +..|.+.+. ..+..+.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTSYA 114 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceEec
Confidence 689999999999999999999999999999999999532 111 11 122333332 1121111
Q ss_pred ----------------------------------cCCcccc----ccchhhhhhc---------ccccccccCCCcEEEE
Q 002620 123 ----------------------------------EGKDTLI----PMFDYQQKNR---------IGSKVIKGASSGVVIV 155 (899)
Q Consensus 123 ----------------------------------~~~~i~~----p~~d~~~~~~---------~~~~~~~~~~~~vVIv 155 (899)
++.++.. |.+....... ............-+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~~~~V~ 194 (863)
T PRK12269 115 PLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGARVVC 194 (863)
T ss_pred ccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0001110 1111100000 0000000112235888
Q ss_pred EccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhh----cHHhhhhcCCCcCcCc-EEEECCCCC
Q 002620 156 DGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI----FPLFRKHIEPDLHHAQ-IRINNRFVS 229 (899)
Q Consensus 156 EG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~----~p~~~k~Iep~~~~AD-iII~N~~~~ 229 (899)
||--+. +-+.+.+|++|||+|+++.|.+||..... ...+.+++.+.+ .....+-+.|.+...| ++|+|+.++
T Consensus 195 eGRDig-TvVfPdA~~KifL~As~e~RA~RR~~e~~-~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ 271 (863)
T PRK12269 195 EGRDLT-TVVFVDADLKCYLDASIEARVARRWAQGT-SRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLT 271 (863)
T ss_pred ECCCCc-cEECCCCCEEEEEECCHHHHHHHHHHhhh-ccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCC
Confidence 988765 35668899999999999999999976543 224455544433 3344445677777767 455777554
No 153
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.47 E-value=1.4e-06 Score=86.13 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccc----cCCCC-CCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDL-DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~p-~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
+|.|+|++||||||+|+.|++.+|+.+++.|.+..... ..+.+ ..-+.......+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTD------------------ 62 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHH------------------
Confidence 47899999999999999999999999999999876311 11111 11111111111110
Q ss_pred cccccccccCCCcEEEEEccccch---hhhhcCC---C-EEEEEEcCHHHHHHHHHHhcc
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---D-IRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D-~~I~Vda~~~~rl~R~i~RD~ 191 (899)
.... .. ......+|+++.+... ..+...+ . ..||++++.++..+|...|..
T Consensus 63 ~~~~-~l-~~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (150)
T cd02021 63 ALLA-KL-ASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKG 120 (150)
T ss_pred HHHH-HH-HhCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhccc
Confidence 0000 00 0112245666665544 2333432 3 579999999999888888863
No 154
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.47 E-value=4.8e-07 Score=91.52 Aligned_cols=135 Identities=14% Similarity=0.160 Sum_probs=76.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCC---CCccHHHHHHHHHhhhcCCccccccchhhhhhc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p---~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (899)
..|.|+|++||||||+|+.||+.+|+++++.|.+........-. ...+...+.+.-...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~------------------ 64 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAA------------------ 64 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHH------------------
Confidence 35888999999999999999999999999999975432211110 011111111111100
Q ss_pred ccccccccCCCcEEEEEc-cccchh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCC-c-----cC----HHHHHHhhc
Q 002620 140 IGSKVIKGASSGVVIVDG-TYALDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGD-S-----CS----LDSLIDSIF 205 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG-~~l~~~---~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~-r-----~~----~e~~~~~~~ 205 (899)
. . . ......||.-| ..++.. .+....+++||++++++..++|...|.... + .+ ..+..+...
T Consensus 65 ~-~-~--~~~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~ 140 (171)
T PRK03731 65 L-E-A--VTAPSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAERE 140 (171)
T ss_pred H-H-H--hcCCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHH
Confidence 0 0 0 01123344433 333332 232446899999999999998887764211 1 11 123333344
Q ss_pred HHhhhhcCCCcCcCcEEEECC
Q 002620 206 PLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 206 p~~~k~Iep~~~~ADiII~N~ 226 (899)
+.|.+ .|+++|+++
T Consensus 141 ~~y~~-------~a~~~Id~~ 154 (171)
T PRK03731 141 ALYRE-------VAHHIIDAT 154 (171)
T ss_pred HHHHH-------hCCEEEcCC
Confidence 44444 567888876
No 155
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.46 E-value=1.1e-06 Score=97.82 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
.++...|+|+|++||||||+++.|++.||++++++|......... ....+.+. .|.. .|......
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~------~i~ei~~~-----~G~~----~fr~~e~~ 194 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGL------SVSEIFAL-----YGQE----GYRRLERR 194 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCC------CHHHHHHH-----HCHH----HHHHHHHH
Confidence 345568999999999999999999999999999999754322111 00000000 0100 01111001
Q ss_pred cccccccccCCCcEEEEEccccch-h----hhhcCCCEEEEEEcCHHHHHHHHHHhccCC----cc----CHHHHHHhhc
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALD-A----RLRSLLDIRVAVVGGVHFSLISKVQYDIGD----SC----SLDSLIDSIF 205 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~-~----~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~----r~----~~e~~~~~~~ 205 (899)
.... .. .....+||..|..... + .+.. -.++|||+++.+.+.+|...|.... .. ......+...
T Consensus 195 ~l~~-ll-~~~~~~VI~~Ggg~v~~~~~~~~l~~-~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~ 271 (309)
T PRK08154 195 ALER-LI-AEHEEMVLATGGGIVSEPATFDLLLS-HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASRE 271 (309)
T ss_pred HHHH-HH-hhCCCEEEECCCchhCCHHHHHHHHh-CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 0100 00 1112355555554322 1 2222 2478999999999999988775321 11 1222223334
Q ss_pred HHhhhhcCCCcCcCcEEEECCCC
Q 002620 206 PLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 206 p~~~k~Iep~~~~ADiII~N~~~ 228 (899)
|.|. +||++|+|+..
T Consensus 272 ~~y~--------~ad~~I~t~~~ 286 (309)
T PRK08154 272 PLYA--------RADAVVDTSGL 286 (309)
T ss_pred HHHH--------hCCEEEECCCC
Confidence 5443 49999999844
No 156
>PRK13947 shikimate kinase; Provisional
Probab=98.45 E-value=7.5e-07 Score=89.96 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=34.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccccc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (899)
..|.|.|++||||||+|+.||+.||+++++.|.+....
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 35999999999999999999999999999999975543
No 157
>PRK04040 adenylate kinase; Provisional
Probab=98.44 E-value=5.7e-07 Score=92.92 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=35.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccch
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS 554 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l--~~~vislDdfy~~ 554 (899)
|.+|+|+|++||||||+++.|++.+ +..+++.|+++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHH
Confidence 6789999999999999999999999 7889999999865
No 158
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.43 E-value=2.1e-07 Score=90.78 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=67.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
+|.+.|++||||||+|+.|++.+++.+|+.|.+...+...+.+...+.......+..... .....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----- 65 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILN----------AAIRK----- 65 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHH----------HHHHH-----
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHH----------HHHHH-----
Confidence 588999999999999999999999999999998876654333322221112111111000 00000
Q ss_pred ccccCCCcEEEEEccccchh------hhhcCC---CEEEEEEcCHHHHHHHHHHhccCCc
Q 002620 144 VIKGASSGVVIVDGTYALDA------RLRSLL---DIRVAVVGGVHFSLISKVQYDIGDS 194 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~------~l~~~~---D~~I~Vda~~~~rl~R~i~RD~~~r 194 (899)
.. ....-+|++..+.... .+.... -..|+++++.++..+|...|.....
T Consensus 66 ~l--~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~ 123 (143)
T PF13671_consen 66 AL--RNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD 123 (143)
T ss_dssp HH--HTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT
T ss_pred HH--HcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc
Confidence 00 1122466676665541 112211 2668999999999999888876543
No 159
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.42 E-value=8.3e-07 Score=91.36 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=64.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCC--CccHHHHHHHHHhhhcCCccccc-cc---hhhh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD--SIDFDALVQNLQDLTEGKDTLIP-MF---DYQQ 136 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~--s~d~~~l~~~L~~l~~~~~i~~p-~~---d~~~ 136 (899)
.+|+|.||+|||||||++.|+..++..++..|............+ .+..+.+.+.+. .+ ..... .+ .+.+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAG---QN-LFALSWHANGLYYGV 78 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHH---CC-chhhHHHHhCCccCC
Confidence 379999999999999999999987777777776533211111111 111122111111 11 10000 00 0011
Q ss_pred hhcccccccccCCCcEEEEEccccchhhhhcC---CCEEEEEEcCHHHHHHHHHHhc
Q 002620 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSL---LDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~---~D~~I~Vda~~~~rl~R~i~RD 190 (899)
...+.. .+ .....||++|.......+... .-.+|||++|.++..+|...|+
T Consensus 79 ~~~~~~-~l--~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 79 GIEIDL-WL--HAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred cHHHHH-HH--hCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 111111 11 123456678776554333322 2367899999999999988875
No 160
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.42 E-value=3.8e-07 Score=91.86 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (899)
.+..|.+.|++||||||+|+.|++.+|..+++.|++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~ 40 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIE 40 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence 46688999999999999999999999999999998865
No 161
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.41 E-value=1.1e-06 Score=88.58 Aligned_cols=134 Identities=19% Similarity=0.193 Sum_probs=81.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCcc---HHHHHH----HHHhhhcCCccccccchhh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSID---FDALVQ----NLQDLTEGKDTLIPMFDYQ 135 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d---~~~l~~----~L~~l~~~~~i~~p~~d~~ 135 (899)
.-|.+.|++||||||+++.||+.||...+|+|.+........-++-|+ .+.+++ .|..+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~------------- 69 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELL------------- 69 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHh-------------
Confidence 358899999999999999999999999999999755322221111111 111111 111111
Q ss_pred hhhcccccccccCCCcEEEEEccccch-hhhhcC---CCEEEEEEcCHHHHHHHHHHhccCCc----cC----HHHHHHh
Q 002620 136 QKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSL---LDIRVAVVGGVHFSLISKVQYDIGDS----CS----LDSLIDS 203 (899)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~---~D~~I~Vda~~~~rl~R~i~RD~~~r----~~----~e~~~~~ 203 (899)
.. .+.||.-|-.++. +..+.+ .-.+||++++.++.++|.- +|.... .+ +++.++.
T Consensus 70 -----------~~-~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~-~~~~RPll~~~~~~~~l~~L~~~ 136 (172)
T COG0703 70 -----------EE-DNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ-RDRKRPLLQTEDPREELEELLEE 136 (172)
T ss_pred -----------hc-CCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc-cccCCCcccCCChHHHHHHHHHH
Confidence 11 1355555554443 322222 2389999999999877765 332111 22 3455666
Q ss_pred hcHHhhhhcCCCcCcCcEEEECCCCC
Q 002620 204 IFPLFRKHIEPDLHHAQIRINNRFVS 229 (899)
Q Consensus 204 ~~p~~~k~Iep~~~~ADiII~N~~~~ 229 (899)
-.|.|++ .||++++.+..+
T Consensus 137 R~~~Y~e-------~a~~~~~~~~~~ 155 (172)
T COG0703 137 RQPLYRE-------VADFIIDTDDRS 155 (172)
T ss_pred HHHHHHH-------hCcEEecCCCCc
Confidence 6788887 699999888554
No 162
>PRK03839 putative kinase; Provisional
Probab=98.41 E-value=8.8e-07 Score=90.49 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=66.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r 598 (899)
.|.|+|++||||||+++.|++.++..++++|+++....... .++..+...+..+...+....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----------------- 63 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGE-EKDDEMEIDFDKLAYFIEEEF----------------- 63 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcc-cCChhhhcCHHHHHHHHHHhc-----------------
Confidence 47889999999999999999999999999999986432111 112222223333333322200
Q ss_pred CCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcC
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
. .+.+|++|.+... ...|..||++++.+....|...|.
T Consensus 64 ---------~-~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 64 ---------K-EKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ---------c-CCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 0 1236778865322 136889999999999888876664
No 163
>PRK08356 hypothetical protein; Provisional
Probab=98.41 E-value=9.9e-07 Score=91.55 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=67.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh---hcccccCCCcccc----cHHHHHHHHHHH--hcCCce
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---QVKDFKYDDFSSL----DLSLLSKNISDI--RNGRRT 586 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~---~~~~~~~d~p~t~----D~~lL~~~L~~L--~~g~~v 586 (899)
..++|+|+||+||||||+|+.|++ +|..++|+.+.++.. +..++.|.....+ +...+.+.-.-+ .-|..+
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 346899999999999999999975 898899999876541 1112222110000 000111100000 001110
Q ss_pred ecccccccccccCCccceeeccCCcEEEEEeecccc--hhhhhcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 587 ~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~--~~l~~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
.+ ...-+ .. .....++++|+-... ..+.......||++++.+.+..|...|+.
T Consensus 83 ~~----~~~~~-----~~---~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 83 LI----RLAVD-----KK---RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred HH----HHHHH-----Hh---ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCC
Confidence 00 00000 00 112358999994443 23444446899999999988888777764
No 164
>PRK02496 adk adenylate kinase; Provisional
Probab=98.40 E-value=6e-07 Score=92.03 Aligned_cols=137 Identities=14% Similarity=0.055 Sum_probs=76.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (899)
|..|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+.. ...... +..+..+.-.........+..
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g---~~~~~~---~~~g~~~~~~~~~~~l~~~l~ 74 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLG---IKAQGY---MDKGELVPDQLVLDLVQERLQ 74 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhH---HHHHHH---HHCCCccCHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999987654322211100 011111 112221111111111111111
Q ss_pred ccccccCCCcEEEEEccccc-------hh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhhh
Q 002620 142 SKVIKGASSGVVIVDGTYAL-------DA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (899)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~-------~~---~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k 210 (899)
. .+...-+|+||.--- .. .+....|..|+++++.+....|...|... .+.++.+++.+..|.+
T Consensus 75 ~----~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd~~~~~~~r~~~y~~ 147 (184)
T PRK02496 75 Q----PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK--DDTEEVIRRRLEVYRE 147 (184)
T ss_pred C----cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH
Confidence 0 112235788997321 11 12235799999999999999998887432 1223344444444444
No 165
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.40 E-value=1.3e-06 Score=87.34 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=72.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccc------cccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG------VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~------~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (899)
.|+|||.+|+||||+|+.|+ .+|..++++-++.+. .++....-..|.+.++..+..+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~-------------- 66 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLR-------------- 66 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhc--------------
Confidence 69999999999999999999 799999999887552 222222345677777777664321
Q ss_pred hcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 138 NRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
....|+|+.+. ++.+.+|++|.+.++++.-..|...|-
T Consensus 67 ------------~~~~Ivd~H~~---hl~~~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 67 ------------EGSGIVDSHLS---HLLPDCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred ------------cCCeEeechhh---hcCCCCCEEEEEcCCHHHHHHHHHHcC
Confidence 12457777765 556689999999999999888877775
No 166
>PRK14531 adenylate kinase; Provisional
Probab=98.40 E-value=2e-06 Score=88.39 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=69.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhh-hcCCccccccchhhhhhccc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIG 141 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~ 141 (899)
..|.|.|++||||||+|+.|++.+|+..|+++++.+.-...+.+ +.+.+..+ ..|..+.-............
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~-------~~~~~~~~~~~G~~v~d~l~~~~~~~~l~ 75 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSA-------LGQEAEAVMNRGELVSDALVLAIVESQLK 75 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCH-------HHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 36999999999999999999999999999998876532221111 11112221 22222111111111111111
Q ss_pred ccccccCCCcEEEEEccccchh---h-------hhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 142 SKVIKGASSGVVIVDGTYALDA---R-------LRSLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~~---~-------l~~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
. ....-+|+||...-.. . ....+|.++++++|.++...|...|..
T Consensus 76 ----~-~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 76 ----A-LNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred ----h-ccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 0 0123467798865421 1 112468899999999999999888743
No 167
>PRK14530 adenylate kinase; Provisional
Probab=98.39 E-value=1.5e-06 Score=91.48 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=68.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC--CCCCccHHHHHHHHHhhhcCCccccccchhhhhhccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN--DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~--~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (899)
.|.|.|++||||||+|+.|++.+|+..|++|++.+.....+ ..++. ....... +..|..+.-...........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~-~~~~~~~---~~~g~~~~d~~~~~~l~~~l- 79 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTE-YDTPGEY---MDAGELVPDAVVNEIVEEAL- 79 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccch-HHHHHHH---HHcCCCCCHHHHHHHHHHHH-
Confidence 59999999999999999999999999999999876432111 00100 1111111 12222111111111111111
Q ss_pred ccccccCCCcEEEEEccccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 142 SKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
....-+|++|...-. ..+. ...|++||++++.++.++|...|.
T Consensus 80 ------~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 80 ------SDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred ------hcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 112357889843322 1221 347999999999999999887774
No 168
>PRK13948 shikimate kinase; Provisional
Probab=98.38 E-value=2.1e-06 Score=88.26 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=35.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (899)
+.+..|.++|.+||||||+++.|++.||..+||+|.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~ 47 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIER 47 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHH
Confidence 3456799999999999999999999999999999986543
No 169
>PRK14532 adenylate kinase; Provisional
Probab=98.37 E-value=2.7e-06 Score=87.50 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=68.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhh-cCCccccccchhhhhhccccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~~~~~~ 143 (899)
|.|.|++||||||+|+.||+.+|+.+|++|++.+.....+.+ +...+..+. .|..+.-...........
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 72 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSE-------LGQRVKGIMDRGELVSDEIVIALIEERL--- 72 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCH-------HHHHHHHHHHCCCccCHHHHHHHHHHHH---
Confidence 788999999999999999999999999999986643221111 111122211 232221111111111111
Q ss_pred ccccCCCcEEEEEccccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 144 VIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.......-+|++|..--. ..+ ....|.+|++++|.++.+.|...|.
T Consensus 73 -~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 73 -PEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred -hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 111223467889854321 111 1346899999999999998888774
No 170
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.37 E-value=2.3e-07 Score=88.39 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=59.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEec---Cccccccc---cCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISM---ENYRVGVD---EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~---D~~~~~~~---~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
|+|+|++||||||+|+.|++.++..+.+. +....... ........+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR------------ 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH------------
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc------------
Confidence 79999999999999999999873211111 01100000 1122233444433333222211100
Q ss_pred cccccccccCCCcEEEEEccccchhhhhcCCCEE-EEEEcCHHHHHHHHHHhccCCc
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR-VAVVGGVHFSLISKVQYDIGDS 194 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~-I~Vda~~~~rl~R~i~RD~~~r 194 (899)
.......+|++|...... .....+.. |||+|+.+++.+|...|.....
T Consensus 69 -------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~~ 117 (129)
T PF13238_consen 69 -------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRKEE 117 (129)
T ss_dssp -------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTSCH
T ss_pred -------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCCCC
Confidence 123345778888887542 11222223 9999999999999988875443
No 171
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.37 E-value=5e-07 Score=93.36 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=79.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHh-----------cCCc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIR-----------NGRR 585 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~-----------~g~~ 585 (899)
.++|+|.||+||||||+|+.||..||...+++--+|+.-...... ...+-.|.+.+...+..+. +|+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~-~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALK-HGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHH-cCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 489999999999999999999999999999999999973321111 1111134444444444321 1111
Q ss_pred eecccccccccccC------Cc------cce-eeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCcc
Q 002620 586 TKVPIFDLETGARS------GF------KEL-EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (899)
Q Consensus 586 v~~P~yD~~~~~r~------~~------~~~-~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~ 652 (899)
+.-..=....+..+ +. ... ......+=+|+||-=.+. -+.+..+++||+++++++|-+||.+....
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~ 161 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQA 161 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 10000000000000 00 000 001122458899987764 24466789999999999999999875543
No 172
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.36 E-value=7.9e-07 Score=76.59 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=46.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (899)
+|+|+|++||||||+++.|++.| ++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 48999999999999999999975 2222221
Q ss_pred cccccccCCCcEEEEEccccchh----hhhcCCCEEEEEEc
Q 002620 141 GSKVIKGASSGVVIVDGTYALDA----RLRSLLDIRVAVVG 177 (899)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~----~l~~~~D~~I~Vda 177 (899)
++|+||.+.+.. .+...+|++||+++
T Consensus 34 -----------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -----------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -----------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 899999999875 57899999999997
No 173
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.36 E-value=2.1e-06 Score=85.68 Aligned_cols=104 Identities=23% Similarity=0.281 Sum_probs=59.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhh
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (899)
++.+|-|+|.+||||||+|+.|.+.| | +.+++.|.+...+...-..+.-|+....+.+..+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~------------ 68 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAK------------ 68 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHH------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHH------------
Confidence 36789999999999999999999988 3 678899988776543222222222222222221110
Q ss_pred hhhcccccccccCCCcEEEEEccccch---hhhhcCCC----EEEEEEcCHHHHHHH
Q 002620 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS 185 (899)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D----~~I~Vda~~~~rl~R 185 (899)
.-.....+||+..+-.+. ...+..+. +-|||+||.+++.+|
T Consensus 69 ---------ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 69 ---------LLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp ---------HHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred ---------HHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 011223466666666655 22333332 669999999988665
No 174
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.34 E-value=2.6e-06 Score=89.45 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=70.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHh-hhcCCccccccchhhhhhccccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+ +...+.. +..|..+.-..+......+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~ 74 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP-------LGKKAKEYMEKGELVPDEIVNQLVKERLTQN 74 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999986643322211 1111222 12232222111222222222110
Q ss_pred ccccCCCcEEEEEccccch---hhh---hc-CCCEEEEEEcCHHHHHHHHHHhc
Q 002620 144 VIKGASSGVVIVDGTYALD---ARL---RS-LLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l---~~-~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.....-+|+||.---. ..+ .. ..|.+|++++|.+..+.|...|.
T Consensus 75 ---~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 75 ---QDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred ---cccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 1113468999963322 122 22 57899999999999999988874
No 175
>PLN02200 adenylate kinase family protein
Probab=98.33 E-value=8e-07 Score=94.97 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=74.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (899)
+.|++|.|.|++||||||+|+.|++.+|+..++++|..+..-.. .+.+...+. ..+..|+.+.-......
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~-------~s~~~~~i~---~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS-------NSEHGAMIL---NTIKEGKIVPSEVTVKL 110 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc-------cChhHHHHH---HHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999999999999999998743211 111111122 22334443221110000
Q ss_pred ccccCCccceeeccCCcEEEEEeecccch---hh----hhcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 595 TGARSGFKELEVSEDCGVIIFEGVYALHP---EI----RKSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 595 ~~~r~~~~~~~~~~~~dVVIvEG~~~~~~---~l----~~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
...+. ... ...-+|++|..-... .+ ....|..|+++++.++.+.|...|..
T Consensus 111 l~~~l-----~~~-~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 111 IQKEM-----ESS-DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred HHHHH-----hcC-CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 00111 001 123589999653221 11 12478999999999999999888753
No 176
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.31 E-value=5.1e-06 Score=84.69 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=59.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCe--EEecCcccc-ccccCC-CCCCccHHHHHHHHHhhhcCCccccccc---hhhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRV-GVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMF---DYQQ 136 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~-~~~~~~-~p~s~d~~~l~~~L~~l~~~~~i~~p~~---d~~~ 136 (899)
+|+|+|++||||||+++.|+..++.. +.....+.. .....+ .......+.+...+ ..+.-..+..+ ....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHRE---DGGAFALSWQAHGLSYGI 79 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHH---HCCCEEEEEeecCccccC
Confidence 68999999999999999999877531 111111111 111111 11111222222111 11111111111 0011
Q ss_pred hhcccccccccCCCcEEEEEccccchhhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 002620 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLL--DIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~--D~~I~Vda~~~~rl~R~i~RD 190 (899)
...... .......||++|.......+...+ -.+||++++.+.+.+|...|.
T Consensus 80 ~~~i~~---~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 80 PAEIDQ---WLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred hHHHHH---HHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 111111 112345678888755444333322 278999999999999988875
No 177
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.31 E-value=1.7e-06 Score=88.37 Aligned_cols=117 Identities=14% Similarity=0.152 Sum_probs=68.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r 598 (899)
+|.|.|++||||||+|+.|++.+|+.++|++|..+..-.. +.+ . -..+.+. +.+|..+.--.........
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~----~~~-~--~~~~~~~---~~~g~~~~~~~~~~ll~~~ 70 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKS----GSE-N--GELIESM---IKNGKIVPSEVTVKLLKNA 70 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhc----CCh-H--HHHHHHH---HHCCCcCCHHHHHHHHHHH
Confidence 4778999999999999999999999999999988743211 000 0 0011111 1233222110000000000
Q ss_pred CCccceeeccCCcEEEEEeecccc---h---hhh---hcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALH---P---EIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~---~l~---~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
..... ..-+|++|..--. . .+. ...|..|+++++.+..+.|...|..
T Consensus 71 -----~~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 71 -----IQADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred -----HhccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 00011 3568999975422 1 111 1467899999999999999888864
No 178
>PLN02199 shikimate kinase
Probab=98.30 E-value=4.4e-06 Score=91.06 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=43.6
Q ss_pred cccccHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccccc
Q 002620 40 SFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (899)
Q Consensus 40 s~d~~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (899)
|||.. .|-+..+..... -+...|.++|.+||||||+++.||+.+|+++||+|.+....
T Consensus 83 ~~de~--~Lk~~a~~i~~~-l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~ 140 (303)
T PLN02199 83 PFDED--ILKRKAEEVKPY-LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQA 140 (303)
T ss_pred CCCHH--HHHHHHHHHHHH-cCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHH
Confidence 78774 244444444332 23346899999999999999999999999999999976643
No 179
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.29 E-value=1.6e-07 Score=104.03 Aligned_cols=43 Identities=37% Similarity=0.475 Sum_probs=38.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc--cccccccC
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEG 103 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~ 103 (899)
.+.+|+|+||+||||||+|..|++.+++.+|++|. +|+++.-.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~ 47 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIG 47 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeeccccc
Confidence 35789999999999999999999999999999999 68876543
No 180
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.1e-07 Score=104.12 Aligned_cols=173 Identities=20% Similarity=0.210 Sum_probs=97.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcc--ccccccCC-CCCCccHHHHHHHHHhhhcCCccccccchhhhh
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (899)
.+.+|.|+||+|||||-+|-.||+.+|++||++|++ |++++-+. .|..-++....++|-+++.-.+ .+...++...
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~ 80 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRD 80 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccc-cccHHHHHHH
Confidence 467899999999999999999999999999999995 99877543 2332222222333333222221 1222222222
Q ss_pred hcccccccccCCCcEEEEEccccchhhhhc-CCCEEEEEEcCHHHHHHHHHHhccCCcc--CHHHHHHhhcHHhhhhcCC
Q 002620 138 NRIGSKVIKGASSGVVIVDGTYALDARLRS-LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEP 214 (899)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~-~~D~~I~Vda~~~~rl~R~i~RD~~~r~--~~e~~~~~~~p~~~k~Iep 214 (899)
.......+...+.-.+++.|.+++-..+.. +.+.. .++.+.+ +++.......+ .+...+....|.
T Consensus 81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p---~~~~~~r--~~~~~~~~~~g~~~L~~~L~~~Dp~------- 148 (308)
T COG0324 81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLP---EADPEVR--RRLEAELAELGNDALHAELKKIDPE------- 148 (308)
T ss_pred HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCC---CCCHHHH--HHHHHHHHhcCHHHHHHHHHhhCHH-------
Confidence 222222223344457888999888755543 22221 2233333 32221111111 111222333333
Q ss_pred CcCcCcEEEECCCCCchhhhhhhcccccc-CCCCCcccccccc
Q 002620 215 DLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQGN 256 (899)
Q Consensus 215 ~~~~ADiII~N~~~~~~~~~~~~lk~~~~-~~~g~~ga~f~~~ 256 (899)
.|.-|-+|| +..++++++. .+||.+-+.+...
T Consensus 149 ---~a~~i~pnD-------~~Ri~RALEv~~~tGk~~s~~~~~ 181 (308)
T COG0324 149 ---AAAKIHPND-------PQRIIRALEVYYLTGKPISELQKR 181 (308)
T ss_pred ---HHHhcCCCc-------hhHHHHHHHHHHHHCCCHHHHhhc
Confidence 444566778 8889999887 8888887766544
No 181
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.28 E-value=2.5e-06 Score=89.86 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=68.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhh-hcCCccccccchhhhhhcccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~ 142 (899)
.|.|.|++||||||+|+.||+.+|+.+|+++++.+.......+ +...+... ..|..+...........+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~ 74 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLVKERLAQ 74 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence 4889999999999999999999999999999876643222211 11112111 122211111111111111111
Q ss_pred cccccCCCcEEEEEccccch---hhh----h---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 143 KVIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l----~---~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.....-+|+||.-.-. ..+ . ...|.+|+++++.+..+.|...|.
T Consensus 75 ----~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 75 ----PDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred ----cCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 1112357889953221 112 1 246899999999999999988884
No 182
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.28 E-value=1.9e-06 Score=87.63 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~ 553 (899)
...+.+|.+.|++||||||+|+.|+..+. +.+++.|++..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 34678999999999999999999999885 55666666543
No 183
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.27 E-value=1.7e-07 Score=102.94 Aligned_cols=172 Identities=13% Similarity=0.019 Sum_probs=95.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcc--ccccccCC-CCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
+.+|.|+||+|||||.||-.||+. +..+||+|.+ |++++-+. .|..-+.....++|-++....+ .+...++....
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e-~~sv~~f~~~a 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIK-EYNLGIFYKEA 81 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCC-ceeHHHHHHHH
Confidence 348999999999999999999998 6699999994 99887543 3443344444444444433322 11222222221
Q ss_pred cccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhhhhcCCCcCc
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHH 218 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k~Iep~~~~ 218 (899)
......+.......|++.|..++-..+..-.+.. -..+++.+. .+....... ..+ ..+.+..+-+...
T Consensus 82 ~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~--p~~~~~~r~--~~~~~~~~~-g~~-------~l~~~L~~~DP~~ 149 (300)
T PRK14729 82 LKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPST--PPVSSKIRI--YVNNLFTLK-GKS-------YLLEELKRVDFIR 149 (300)
T ss_pred HHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCC--CCCCHHHHH--HHHHHHHhc-CHH-------HHHHHHHhcCHHH
Confidence 1111122234455799999999876655433221 022333221 121111111 111 1222222222334
Q ss_pred CcEEEECCCCCchhhhhhhcccccc-CCCCCcccccc
Q 002620 219 AQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (899)
Q Consensus 219 ADiII~N~~~~~~~~~~~~lk~~~~-~~~g~~ga~f~ 254 (899)
|.-+-.|| ++.++++++. ..||...+.+.
T Consensus 150 A~~i~pnd-------~~Ri~RALEv~~~tG~~~s~~~ 179 (300)
T PRK14729 150 YESINKND-------IYRIKRSLEVYYQTGIPISQFL 179 (300)
T ss_pred HhhCCcCC-------HHHHHHHHHHHHHhCCChHhhh
Confidence 55666777 8899999988 67887766654
No 184
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.25 E-value=7.3e-07 Score=84.87 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=62.2
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh----cccccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~----~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (899)
|+|+|++||||||+|+.|++.++ ....|.++.... ........-...+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR---------- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH----------
T ss_pred CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc----------
Confidence 78999999999999999999873 122222221100 00011222334455554444444332110
Q ss_pred cccCCccceeeccCCcEEEEEeecccchhhhhcCCEE-EEEEcCchhhHHHHhhcCccc
Q 002620 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLW-IAVVGGVHSHLISRVQRDKSR 653 (899)
Q Consensus 596 ~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~-I~vd~~~d~rl~Rri~RD~~~ 653 (899)
.......+|++|++.... .....+.. |+++++.+++..|...|....
T Consensus 69 ----------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~ 116 (129)
T PF13238_consen 69 ----------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRKE 116 (129)
T ss_dssp ----------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTSC
T ss_pred ----------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCCC
Confidence 123356789999997542 11122223 999999999999988876443
No 185
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.25 E-value=4.9e-06 Score=88.63 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=72.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhc-CCccccccchhhhhhc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTE-GKDTLIPMFDYQQKNR 139 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~-~~~i~~p~~d~~~~~~ 139 (899)
.|..|.|.|++||||||+|+.|++.+|+.+|++|++.+.......+ +...+..+.. |..+.-..+.......
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~-------lg~~i~~~~~~G~lvpd~iv~~lv~~~ 77 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTT-------IGKEIQKVVTSGNLVPDNLVIAIVKDE 77 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 3455999999999999999999999999999999987743322111 1122222222 2211111111111111
Q ss_pred ccccccccCCCcEEEEEcccc-ch--hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 140 IGSKVIKGASSGVVIVDGTYA-LD--ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l-~~--~~l~--~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.... .......+|++|.-- .. ..+. ...|.+++++++.++.++|...|.
T Consensus 78 l~~~--~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 78 IAKV--TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHhh--ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 1110 012235689999632 11 1111 357899999999999999988875
No 186
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.23 E-value=4.9e-06 Score=91.94 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=74.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecCccccccccCCCCCCccH-----HHHHHHHHhhhcCCccccccchhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDEGNDLDSIDF-----DALVQNLQDLTEGKDTLIPMFDYQ 135 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~~~~p~s~d~-----~~l~~~L~~l~~~~~i~~p~~d~~ 135 (899)
+.+|.++|++||||||+|+.|++.+ ++.+|+.|.+...+......+.+.+ ..+.+...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 65 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQE---------------- 65 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHH----------------
Confidence 4689999999999999999999999 8999999998654322111111110 01110000
Q ss_pred hhhcccccccccCCCcEEEEEccccchh---hhhc-----CCCE-EEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcH
Q 002620 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---RLRS-----LLDI-RVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFP 206 (899)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~-----~~D~-~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p 206 (899)
..+.. . ......+|+++...... .+.. .+++ .+|++++.++..+|...|. ......+.+..+..
T Consensus 66 --~~~~~-~--l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~--~~~~~~~~i~~~~~ 138 (300)
T PHA02530 66 --AAALA-A--LKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG--ERAVPEDVLRSMFK 138 (300)
T ss_pred --HHHHH-H--HHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC--cCCCCHHHHHHHHH
Confidence 00000 0 01224578887766431 1111 1233 5899999999999998883 22234555555444
Q ss_pred Hhhhhc
Q 002620 207 LFRKHI 212 (899)
Q Consensus 207 ~~~k~I 212 (899)
.++.+.
T Consensus 139 ~~~~~~ 144 (300)
T PHA02530 139 QMKEYR 144 (300)
T ss_pred HHHHhc
Confidence 455443
No 187
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.23 E-value=9.4e-06 Score=84.44 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=34.4
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh-----CCeEEecCccccc
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG 99 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~ 99 (899)
..++.+|+|+|.+||||||+++.|+..+ |+.+++.|.+...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG 66 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence 4677899999999999999999999876 3577888887543
No 188
>PLN02840 tRNA dimethylallyltransferase
Probab=98.23 E-value=2.2e-07 Score=105.98 Aligned_cols=178 Identities=17% Similarity=0.113 Sum_probs=95.2
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc--cccccccCC-CCCCccHHHHHHHHHhhhcCCccccccchhh
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~-~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (899)
.....+|+|+||+||||||+|..|++.++..+|++|. +|+++.-+. .|..-+.....++|-++..-.+ .+...++.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e-~ySv~~F~ 96 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSD-DYSVGAFF 96 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCC-ceeHHHHH
Confidence 3455689999999999999999999999999999998 588766433 2332233333333333222211 11122222
Q ss_pred hhhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHH--HHHhccCCccCHHHHHHhhcHHhhhhcC
Q 002620 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLIS--KVQYDIGDSCSLDSLIDSIFPLFRKHIE 213 (899)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R--~i~RD~~~r~~~e~~~~~~~p~~~k~Ie 213 (899)
.........+.....-.||+.|..++-..+..-.... -..+.+.+.+- .+.+. ......+... ....+.+.
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~--p~~~~~~r~~l~~~l~~~-~~~~g~~~l~----~~Ll~~~D 169 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDV--PKSSPEITSEVWSELVDF-QKNGDWDAAV----ELVVNAGD 169 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCC--CCCCHHHHHHHHHHHHHh-ccccCHHHHH----HHHHhccC
Confidence 2222111122234445789999999876555432211 12233432211 11111 0001111111 11122233
Q ss_pred CCcCcCcEEEECCCCCchhhhhhhcccccc-CCCCCcccccc
Q 002620 214 PDLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (899)
Q Consensus 214 p~~~~ADiII~N~~~~~~~~~~~~lk~~~~-~~~g~~ga~f~ 254 (899)
| .|.-+-.|| .+.++++++. ..+|.+.+.|.
T Consensus 170 P---~A~~i~pnD-------~~Ri~RALEV~~~TG~~~S~~~ 201 (421)
T PLN02840 170 P---KARSLPRND-------WYRLRRSLEIIKSSGSPPSAFS 201 (421)
T ss_pred c---HHHhcCCCc-------HHHHHHHHHHHHHHCCCHHHhh
Confidence 3 555666777 8889999887 67787766653
No 189
>PRK00625 shikimate kinase; Provisional
Probab=98.22 E-value=3.3e-06 Score=86.11 Aligned_cols=137 Identities=10% Similarity=0.072 Sum_probs=76.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCc-------ccccHHHHH-HHHHHHhcCCceeccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF-------SSLDLSLLS-KNISDIRNGRRTKVPI 590 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p-------~t~D~~lL~-~~L~~L~~g~~v~~P~ 590 (899)
.|.++|.+||||||+++.|++.++..++++|++-........ +..+ +.--+..+. +.+..+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~-~~~i~eif~~~Ge~~fr~~E~~~l~~l~--------- 71 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL-YSSPKEIYQAYGEEGFCREEFLALTSLP--------- 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC-CCCHHHHHHHHCHHHHHHHHHHHHHHhc---------
Confidence 377899999999999999999999999999988653211110 0010 000000111 1111110
Q ss_pred ccccccccCCccceeeccCCcEEEEEeecccchhhhhcC---CEEEEEEcCchhhHHHHhhcCccccccccch-hhHHhh
Q 002620 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMT 666 (899)
Q Consensus 591 yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~---D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~-~q~~~~ 666 (899)
....||-..|.....++....+ ...||++++.+....|...|........... .+.+..
T Consensus 72 -----------------~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~ 134 (173)
T PRK00625 72 -----------------VIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQ 134 (173)
T ss_pred -----------------cCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHH
Confidence 1122444555555554433333 5789999999988888776654322111111 233334
Q ss_pred ccchhhhhcccccCcccEEEcCC
Q 002620 667 VFPMFQQHIEPHLVHAHLKIRND 689 (899)
Q Consensus 667 v~p~~~~~I~p~~~~ADivI~n~ 689 (899)
..|.|.+ .||++|+.+
T Consensus 135 R~~~Y~~-------~ad~~i~~~ 150 (173)
T PRK00625 135 RIDRMRS-------IADYIFSLD 150 (173)
T ss_pred HHHHHHH-------HCCEEEeCC
Confidence 4445544 588888644
No 190
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.22 E-value=9.5e-06 Score=82.66 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=30.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCe--EEecCccccc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRVG 99 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~~ 99 (899)
.+|.++|++||||||+|+.|++.++.. .++.|.|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 479999999999999999999988754 4578877553
No 191
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.21 E-value=1.7e-06 Score=74.53 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.3
Q ss_pred EEEEEeecccch----hhhhcCCEEEEEEc
Q 002620 612 VIIFEGVYALHP----EIRKSLDLWIAVVG 637 (899)
Q Consensus 612 VVIvEG~~~~~~----~l~~~~D~~I~vd~ 637 (899)
++|+||.+.... .+++..|++||+++
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 999999999874 57889999999987
No 192
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.21 E-value=5.5e-06 Score=84.36 Aligned_cols=156 Identities=11% Similarity=0.017 Sum_probs=71.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCC----CCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL----DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p----~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
.+|+|.|++||||||+++.|+..++...++....-+....+... .-.+...+.+.+ ..+.-+....+....+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~ 78 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGNYYG 78 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHH---HcCCcEEEEEECCeeeC
Confidence 47999999999999999999986654333322111111110000 011222222221 22221222111111111
Q ss_pred cc-cccccccCCCcEEEEEccccchhhhhcCC-C-EEEEEEcC-HHHHHHHHHHhccCCccCHHHHHHhhcHHhhhhcCC
Q 002620 139 RI-GSKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEP 214 (899)
Q Consensus 139 ~~-~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vda~-~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k~Iep 214 (899)
.. ...........++|++........+.+.+ + +.|++..+ .+....|...|........+..++.+....+.
T Consensus 79 ~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~---- 154 (180)
T TIGR03263 79 TPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAH---- 154 (180)
T ss_pred CcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc----
Confidence 00 00000112345777776544333333333 4 45666444 55655555555432223444444444433322
Q ss_pred CcCcCcEEEECC
Q 002620 215 DLHHAQIRINNR 226 (899)
Q Consensus 215 ~~~~ADiII~N~ 226 (899)
.+.+|.+|.|+
T Consensus 155 -~~~~d~~i~n~ 165 (180)
T TIGR03263 155 -ADEFDYVIVND 165 (180)
T ss_pred -cccCcEEEECC
Confidence 45699999997
No 193
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.19 E-value=1.1e-05 Score=80.81 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCcccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (899)
|+|+|++||||||+|+.|+..+|..+++.|+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccC
Confidence 5789999999999999999999999999999854
No 194
>PRK13808 adenylate kinase; Provisional
Probab=98.19 E-value=4.6e-06 Score=92.92 Aligned_cols=115 Identities=17% Similarity=0.084 Sum_probs=69.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~ 144 (899)
|.|.|++||||||+|..|++.+|+.+|++|++.+.......+.. ..+.+.+ ..|..+.-..+......+...
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g---~~~~~~~---~~G~lVPdeiv~~li~e~l~~-- 74 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVG---LKAKDIM---ASGGLVPDEVVVGIISDRIEQ-- 74 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhh---HHHHHHH---HcCCCCCHHHHHHHHHHHHhc--
Confidence 78899999999999999999999999999998764332222211 0111111 122221111111122222211
Q ss_pred cccCCCcEEEEEccccchh---h----hh---cCCCEEEEEEcCHHHHHHHHHHh
Q 002620 145 IKGASSGVVIVDGTYALDA---R----LR---SLLDIRVAVVGGVHFSLISKVQY 189 (899)
Q Consensus 145 ~~~~~~~vVIvEG~~l~~~---~----l~---~~~D~~I~Vda~~~~rl~R~i~R 189 (899)
.....-+|+||.---.. . +. -..|++|+|++|.++.+.|...|
T Consensus 75 --~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 75 --PDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred --ccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 11224588898653321 1 11 25799999999999999998877
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.18 E-value=3.1e-06 Score=104.46 Aligned_cols=134 Identities=19% Similarity=0.292 Sum_probs=82.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCC-Cc--ccccHHHHHHHHHHHhcCCceec---ccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYD-DF--SSLDLSLLSKNISDIRNGRRTKV---PIF 591 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d-~p--~t~D~~lL~~~L~~L~~g~~v~~---P~y 591 (899)
.+|+|+||+||||||+|+.|++.+|..++++..+|+.........+ .+ ...|.+.+.+.+..+..+..+.+ |..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 3799999999999999999999999999999999987432111111 11 12345566666665544433222 110
Q ss_pred --------ccc--c-----c-----------ccCC---c-cceeeccC-------CcEEEEEeecccchhhhhcCCEEEE
Q 002620 592 --------DLE--T-----G-----------ARSG---F-KELEVSED-------CGVIIFEGVYALHPEIRKSLDLWIA 634 (899)
Q Consensus 592 --------D~~--~-----~-----------~r~~---~-~~~~~~~~-------~dVVIvEG~~~~~~~l~~~~D~~I~ 634 (899)
|-. . + -|.. . .......+ ..=+|+||--++.- +.+..|+++|
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtv-v~p~a~~K~~ 160 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTV-VAPDAEVRIL 160 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceE-EecCCCeEEE
Confidence 000 0 0 0000 0 00000011 12599999998762 3345799999
Q ss_pred EEcCchhhHHHHhhcCcc
Q 002620 635 VVGGVHSHLISRVQRDKS 652 (899)
Q Consensus 635 vd~~~d~rl~Rri~RD~~ 652 (899)
++++.+.|..||..++..
T Consensus 161 l~A~~~~Ra~Rr~~~~~~ 178 (712)
T PRK09518 161 LTAREEVRQARRSGQDRS 178 (712)
T ss_pred EECCHHHHHHHHHHhhhc
Confidence 999999999999988753
No 196
>PLN02165 adenylate isopentenyltransferase
Probab=98.18 E-value=3.1e-06 Score=93.99 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=72.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcc--ccccccCCC-CCCccHHHHHHHHHhhhcCC--ccccccchh
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGK--DTLIPMFDY 134 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-p~s~d~~~l~~~L~~l~~~~--~i~~p~~d~ 134 (899)
....+|+|+||+||||||+|..||..++..+|++|.+ |++++-... |...+...+.+++-+..... ......|..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~ 120 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRS 120 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHH
Confidence 3344899999999999999999999999999999995 787665432 33223222333333322221 122222222
Q ss_pred hhhhcccccccccCCCcEEEEEccccchhhhhc---------------------CCC-EEEEEEcCHHHHHHHHHHh
Q 002620 135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRS---------------------LLD-IRVAVVGGVHFSLISKVQY 189 (899)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~---------------------~~D-~~I~Vda~~~~rl~R~i~R 189 (899)
.....+. .+......+|++.|..++-..+.. .++ +.++++.+.+.-..|.-+|
T Consensus 121 ~a~~~I~--~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~R 195 (334)
T PLN02165 121 LASLSIS--EITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKR 195 (334)
T ss_pred HHHHHHH--HHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHH
Confidence 2122111 122234456777777765432222 133 3567887876655554444
No 197
>PRK13949 shikimate kinase; Provisional
Probab=98.16 E-value=5e-06 Score=84.47 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=32.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (899)
-|.|.|++||||||+++.|++.++..++++|.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~ 37 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE 37 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHH
Confidence 37789999999999999999999999999998765
No 198
>PRK12338 hypothetical protein; Provisional
Probab=98.15 E-value=6.5e-06 Score=91.12 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=32.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (899)
+|.+|+|+|+|||||||+|+.||+.+|+..+..+++.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r 40 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIR 40 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHH
Confidence 57899999999999999999999999998775555544
No 199
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.15 E-value=2.1e-05 Score=80.66 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=62.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccch
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFD 133 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d 133 (899)
...+.+|+|+|++||||||+++.|+..+ | +.+++.|.+.+.+..... +......+.+..+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~---~~~~~~~~~~~~~~----------- 80 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLG---FSEEDRKENIRRIG----------- 80 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccC---CCHHHHHHHHHHHH-----------
Confidence 3556899999999999999999999877 2 467788887654332111 11111111111100
Q ss_pred hhhhhcccccccccCCCcEEEEEccccch---hhhhcCC----CEEEEEEcCHHHHHHH
Q 002620 134 YQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL----DIRVAVVGGVHFSLIS 185 (899)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~----D~~I~Vda~~~~rl~R 185 (899)
. .. ........+||++...... ..+...+ -..+|+++|.+.+.+|
T Consensus 81 ----~-~~--~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 81 ----E-VA--KLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred ----H-HH--HHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 0 00 0011234578888876654 2232322 2568999999988777
No 200
>PRK14527 adenylate kinase; Provisional
Probab=98.14 E-value=6.1e-06 Score=85.26 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHH-HhcCCceecccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 593 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~ 593 (899)
..+.+|.|.||+||||||+|+.|++.++...+++|+..+..... ++ + +.+.+.. +..|..+.-.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~-------~~-~---~~~~~~~~~~~g~~~p~~~~~~ 72 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVAR-------GT-E---LGQRAKPIMEAGDLVPDELILA 72 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhc-------Cc-H---HHHHHHHHHHcCCCCcHHHHHH
Confidence 45778999999999999999999999999999999998753211 00 0 1111111 12232211100000
Q ss_pred cccccCCccceeeccCCcEEEEEeecccchh---hh-------hcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPE---IR-------KSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~---l~-------~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
...++. . ..+..-+|++|..-.... +. ..++..++++++.++.+.|...|..
T Consensus 73 l~~~~l-----~-~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 73 LIRDEL-----A-GMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred HHHHHH-----h-cCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 001111 0 011234888996532211 11 2367789999999999999888753
No 201
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.13 E-value=5.1e-06 Score=92.49 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=35.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (899)
.++...|+++|++||||||+++.|++.+|+.++++|....
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~ 169 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE 169 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH
Confidence 3556789999999999999999999999999999886543
No 202
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=2.5e-05 Score=76.54 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=36.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (899)
+-+.+|.|.|++||||||++++|++.||+..++.|+|+.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp 48 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHP 48 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCC
Confidence 445689999999999999999999999999999999987
No 203
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.11 E-value=1.5e-05 Score=79.13 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=73.0
Q ss_pred CceEEEEeeCCEEEEEEeccccccCcccccceeEEehhhHHHHHHHcCceeeeeeeeeeEEeecCcEEEEEecccCCCCc
Q 002620 749 SDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDAPSP 828 (899)
Q Consensus 749 ~~~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 828 (899)
...+|||..+++++||||+++.| ++|.++|.+|+..-..-|++ +..++.|+|.|..|..++.++++|.++|+|..
T Consensus 34 ~~~lRiR~~~~~~~lT~K~~~~~---~~R~E~E~~i~~~~~~~l~~--~~~~~~I~K~R~~~~~~~~~~~lD~~~g~~~g 108 (148)
T cd07891 34 ERTVRVRIAGDRAYLTIKGPTNG---LSRYEFEYEIPLADAEELLA--LCEGPVIEKTRYRVPHGGHTWEVDVFHGENAG 108 (148)
T ss_pred CcEEEEEEeCCEEEEEEEeCCCC---ceEEEEEEeCCHHHHHHHHh--cCCCCeEEEEEEEEEeCCEEEEEEEEcCCCCc
Confidence 35899999999999999999987 77899999998776666666 56788999999999999999999999999942
Q ss_pred --eEEEecccHH
Q 002620 829 --YLQIKGVDKE 838 (899)
Q Consensus 829 --~~~~~~~~~~ 838 (899)
|+||.-.+-+
T Consensus 109 L~~~EiE~~~e~ 120 (148)
T cd07891 109 LVVAEIELPSED 120 (148)
T ss_pred eEEEEEEcCCcc
Confidence 9999665544
No 204
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.11 E-value=7.3e-06 Score=83.76 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=68.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHH-hcCCceeccccc--c
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDI-RNGRRTKVPIFD--L 593 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L-~~g~~v~~P~yD--~ 593 (899)
..+|+|.|++||||||+|+.|++.+|...+++|++.+..... ..+ . .+.+..+ .+|.. .|.-. .
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~----~~~----~---~~~~~~~~~~~~~--~~~~~~~~ 69 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS----GSE----R---GKQLQAIMESGDL--VPLDTVLD 69 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc----CCH----H---HHHHHHHHHCCCC--CCHHHHHH
Confidence 357889999999999999999999999999999887642110 000 0 1111111 11211 11100 0
Q ss_pred cccccCCccceeeccCCcEEEEEeecccc---hhhh---hcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG~~~~~---~~l~---~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
...+.. ........-+|++|..-.. ..+. ...|..|+++++.+..+.|...|..
T Consensus 70 ~l~~~~----~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 70 LLKDAM----VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred HHHHHH----HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 000000 0001224567889864321 1111 2468999999999999888877753
No 205
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.09 E-value=1.5e-05 Score=95.42 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=73.9
Q ss_pred cCCccccccccHHHHHHHHHHHHh-cCCCcEEEEEECCCCCcHHHHHHHHHHHhCC------eEEecCccccccccCCCC
Q 002620 34 SLPVHASFDHGYYLLVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC------TLISMENYRVGVDEGNDL 106 (899)
Q Consensus 34 ~~~~~is~d~~y~~l~~~i~~~~~-~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~------~vI~~D~~~~~~~~~~~p 106 (899)
.+|..++.-+ +++.+..... +..++.+|.|+|.+||||||+|+.|++.|+. .+++.|.+.+.+......
T Consensus 367 ~pP~~f~rpe----V~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f 442 (568)
T PRK05537 367 EIPEWFSFPE----VVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGF 442 (568)
T ss_pred CCChhhcHHH----HHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCC
Confidence 3444555433 4444444443 3456789999999999999999999999985 889999886554321111
Q ss_pred CCccHHHHHHHHHhhhcCCccccccchhhhhhcccccccccCCCcEEEEEccccch---hh----hhcCCC-EEEEEEcC
Q 002620 107 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---AR----LRSLLD-IRVAVVGG 178 (899)
Q Consensus 107 ~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~----l~~~~D-~~I~Vda~ 178 (899)
...+.+...+.+..+. ........++|++.+..+. .. +...-. +.||++++
T Consensus 443 ~~~er~~~~~~l~~~a---------------------~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p 501 (568)
T PRK05537 443 SKEDRDLNILRIGFVA---------------------SEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATP 501 (568)
T ss_pred CHHHHHHHHHHHHHHH---------------------HHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCC
Confidence 1122222111111100 0011224577777665544 12 222223 47999999
Q ss_pred HHHHHHHH
Q 002620 179 VHFSLISK 186 (899)
Q Consensus 179 ~~~rl~R~ 186 (899)
.+++.+|.
T Consensus 502 ~e~l~~R~ 509 (568)
T PRK05537 502 LEVCEQRD 509 (568)
T ss_pred HHHHHHhc
Confidence 99887663
No 206
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.09 E-value=1.7e-05 Score=83.98 Aligned_cols=59 Identities=8% Similarity=-0.037 Sum_probs=38.5
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhcHHhhhhcCC-CcCcCcEEEECC
Q 002620 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIRINNR 226 (899)
Q Consensus 168 ~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~~~~p~~~k~Iep-~~~~ADiII~N~ 226 (899)
..|++||++++++.+++|...|..... ....++++++...|.+++.+ ....+++++.|.
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~ 202 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW 202 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC
Confidence 359999999999999999887764322 23334555555666655433 344577777653
No 207
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.09 E-value=1.5e-05 Score=82.31 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=43.1
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc-c---CHHHHHHhhcHHhhhhcCCCcCcCcEEEECC
Q 002620 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-C---SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 168 ~~D~~I~Vda~~~~rl~R~i~RD~~~r-~---~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
.-|+.||++|+.++-+.|..+|..... . .-+++.+.....|..|++..-...++.|+.+
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~ 188 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGD 188 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccc
Confidence 679999999999998888887765433 1 1146777777788887777666677777654
No 208
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.08 E-value=8.1e-06 Score=80.64 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=32.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
|.|.|++||||||+|+.|++.+|...++.|.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~ 36 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQ 36 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence 67899999999999999999999999999988653
No 209
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.07 E-value=1.1e-06 Score=96.16 Aligned_cols=171 Identities=18% Similarity=0.128 Sum_probs=88.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCc--cccccccCC-CCCCccHHHHHHHHHhhhcCCccccccchhhhhhcc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~-~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (899)
+|+|+||+|||||++|..|++.+++.+|++|+ +|+++.-.. .|..-+.+...+++-+.....+ .+..-++......
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-~~~v~~f~~~a~~ 79 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-SYSAADFQTLALN 79 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-eEcHHHHHHHHHH
Confidence 48999999999999999999999999999999 588776443 2322222222222222211111 1111111111111
Q ss_pred cccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhhhhcCCCcCcCc
Q 002620 141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQ 220 (899)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k~Iep~~~~AD 220 (899)
............|++.|..++-..+..-.... -..+++. +..+.+. ......+. .+.+..+-+...|.
T Consensus 80 ~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~--p~~~~~~--r~~l~~~-~~~~g~~~-------l~~~L~~~DP~~a~ 147 (287)
T TIGR00174 80 AIADITARGKIPLLVGGTGLYLKALLEGLSPT--PSADKLI--REQLEIL-AEEQGWDF-------LYNELKKVDPVAAA 147 (287)
T ss_pred HHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCC--CCCCHHH--HHHHHHH-HHHcCHHH-------HHHHHHhcCHHHHH
Confidence 11112233445888999999876555432211 0112222 2222211 11111111 12221122223455
Q ss_pred EEEECCCCCchhhhhhhcccccc-CCCCCcccccc
Q 002620 221 IRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (899)
Q Consensus 221 iII~N~~~~~~~~~~~~lk~~~~-~~~g~~ga~f~ 254 (899)
-|-.|| ++.++++++. ..+|.+.+.+.
T Consensus 148 ~i~~nd-------~~Ri~RALEi~~~tG~~~s~~~ 175 (287)
T TIGR00174 148 KIHPND-------TRRVQRALEVFYATGKPPSELF 175 (287)
T ss_pred hcCCcc-------HHHHHHHHHHHHHHCCChHHHh
Confidence 666677 8889999887 66787766653
No 210
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.07 E-value=3.8e-06 Score=102.80 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=77.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhc---CCcee-----
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN---GRRTK----- 587 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~---g~~v~----- 587 (899)
+..+|.|.||+||||||+|+.|++.++..+++.|.+|+.-....... ...-.|.+.+.+.+..+.- +..+.
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRA-GVALDDEAAIAALARGLPVRFEGDRIWLGGED 519 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHc-CcCCCCHHHHHHHHhcCCeeecCCeEEECCeE
Confidence 35589999999999999999999999999999999999742211100 0111244445554443221 00010
Q ss_pred -------------------cccccccccccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhh
Q 002620 588 -------------------VPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQ 648 (899)
Q Consensus 588 -------------------~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~ 648 (899)
.|..+.....+ .+......=+|+||--.+.- +.+..|++||++++.+.|-.||..
T Consensus 520 ~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~-----qr~~~~~~~~v~eGRdigtv-v~p~a~~kifl~a~~~~Ra~Rr~~ 593 (661)
T PRK11860 520 VTDAIRTEAAGMGASRVSALPAVRAALLAL-----QRSFRRLPGLVADGRDMGTV-IFPDAALKVFLTASAEARAERRYK 593 (661)
T ss_pred chhhhCcHHHHHHHHHHhCCHHHHHHHHHH-----HHHHhhCCCEEEECCCCccE-ECCCCCeEEEEECChhHHHHHHHH
Confidence 11111100000 00001122479999888752 334589999999999999999987
Q ss_pred cC
Q 002620 649 RD 650 (899)
Q Consensus 649 RD 650 (899)
..
T Consensus 594 ~~ 595 (661)
T PRK11860 594 QL 595 (661)
T ss_pred HH
Confidence 53
No 211
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.1e-05 Score=80.81 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=39.5
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccccccccC
Q 002620 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEG 103 (899)
Q Consensus 57 ~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~ 103 (899)
..+.++++|=+||.|||||||+|.+|.+.| | +.++|.|.+..++...
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~d 69 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRD 69 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCC
Confidence 345667999999999999999999999987 4 6789999988877644
No 212
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.05 E-value=1.8e-05 Score=81.69 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=80.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcc-----cccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK-----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~-----~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~ 590 (899)
.+++|.|+|||||||||+++.|.+...-...+..--=++...+ +|.| .+. .++...+..|.-++.-.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~f-----vs~---~~F~~~i~~~~f~e~~~ 74 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFF-----LTI---EEFKKGIADGEFLEWAE 74 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEe-----CCH---HHHHHHHHcCCeEEEEE
Confidence 5788999999999999999999886532222221111111111 1222 111 22334455666666555
Q ss_pred ccccc-cccCCccce-eeccCCcEEEEEeecccchhhhhcCC---EEEEEEcCc-hhhHHHHhhcCccccccccch-hhH
Q 002620 591 FDLET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSLD---LWIAVVGGV-HSHLISRVQRDKSRMGCFMSQ-NDI 663 (899)
Q Consensus 591 yD~~~-~~r~~~~~~-~~~~~~dVVIvEG~~~~~~~l~~~~D---~~I~vd~~~-d~rl~Rri~RD~~~rg~~~~~-~q~ 663 (899)
|.-.. |... +.+ .......++|++.-.-+...++..+. ..||+.+|. +....|+..|+.. +.+. ...
T Consensus 75 ~~g~~YGt~~--~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~----s~e~i~~R 148 (186)
T PRK14737 75 VHDNYYGTPK--AFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD----SEESIEKR 148 (186)
T ss_pred ECCeeecCcH--HHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC----CHHHHHHH
Confidence 44322 1111 111 12344678888865544455555543 689998875 5555666665432 1111 112
Q ss_pred HhhccchhhhhcccccCcccEEEcCC
Q 002620 664 MMTVFPMFQQHIEPHLVHAHLKIRND 689 (899)
Q Consensus 664 ~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (899)
+....+ .. .....+|.+|.|+
T Consensus 149 l~~~~~-e~----~~~~~~D~vI~N~ 169 (186)
T PRK14737 149 IENGII-EL----DEANEFDYKIIND 169 (186)
T ss_pred HHHHHH-HH----hhhccCCEEEECc
Confidence 221111 11 2246799999997
No 213
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=4.4e-05 Score=74.54 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=67.4
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEecCccccc--c--ccCCCC-CCccHHHHHHH----HHhhhcCCccccccchhhhhh
Q 002620 68 GGPSGSGKTSLAEKLASVIGCTLISMENYRVG--V--DEGNDL-DSIDFDALVQN----LQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 68 tG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~--~--~~~~~p-~s~d~~~l~~~----L~~l~~~~~i~~p~~d~~~~~ 138 (899)
.|.+||||||++..||+.||+..|+.|+++.. . ...+.| .--|+.-..+. +.....++.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~------------ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK------------ 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC------------
Confidence 49999999999999999999999999999873 1 112222 22222222222 222211111
Q ss_pred cccccccccCCCcEEEEEcccc--chhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhhh
Q 002620 139 RIGSKVIKGASSGVVIVDGTYA--LDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l--~~~~l~~~~-D-~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k 210 (899)
..||+...+= +...++..+ + ..||++.+.++.++|...|.+.. .+...++.|+...+.
T Consensus 69 ------------~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF--M~~~ll~SQfa~LE~ 130 (161)
T COG3265 69 ------------HVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF--MPASLLDSQFATLEE 130 (161)
T ss_pred ------------ceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC--CCHHHHHHHHHHhcC
Confidence 1222222211 123444433 3 34799999999999988886332 344556655544443
No 214
>PLN02674 adenylate kinase
Probab=98.03 E-value=2.5e-05 Score=83.79 Aligned_cols=121 Identities=10% Similarity=-0.045 Sum_probs=73.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (899)
.....|.|.|++||||||+|+.|++.+|+..|+++++.+.....+.+- . ..+.+. +..|..+.-.........+
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~--g-~~i~~~---~~~G~lvpd~iv~~lv~~~ 102 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPL--G-IKAKEA---MDKGELVSDDLVVGIIDEA 102 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChh--h-HHHHHH---HHcCCccCHHHHHHHHHHH
Confidence 334568899999999999999999999999999999877533322221 0 111122 1233332222222222222
Q ss_pred ccccccccCCCcEEEEEccccch---hhh----h---cCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 140 IGSKVIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~---~~l----~---~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
... .....-+|++|.=--. ..+ . ...|.+|+++++.+..++|...|.
T Consensus 103 l~~----~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 103 MKK----PSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HhC----cCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 111 1122457888864322 111 1 357999999999999999988774
No 215
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.02 E-value=4.1e-05 Score=75.66 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
+|.++|++||||||+|+.|++.+++.+++.|++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 467899999999999999999999999999999864
No 216
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.02 E-value=8.1e-06 Score=83.95 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=67.3
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccccC
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 599 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r~ 599 (899)
|.|.|++||||||+|+.|++.+|+.++++|+..+...... +-....+.+. +.+|..+.-...........
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~-------~~~~~~~~~~---~~~g~~~~~~~~~~l~~~~l 71 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG-------TELGKKAKEY---IDSGKLVPDEIVIKLLKERL 71 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC-------ChHHHHHHHH---HHcCCccCHHHHHHHHHHHH
Confidence 6789999999999999999999999999999886421111 0001111111 11222211100000001100
Q ss_pred CccceeeccCCcEEEEEeecccc------hhhhh---cCCEEEEEEcCchhhHHHHhhcCc
Q 002620 600 GFKELEVSEDCGVIIFEGVYALH------PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 600 ~~~~~~~~~~~dVVIvEG~~~~~------~~l~~---~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
.......-+|++|.-... ..... ..+..|+++++.++.+.|...|..
T Consensus 72 -----~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 72 -----KKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred -----hcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 000023457888854322 11222 568999999999999999888764
No 217
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.01 E-value=1.6e-05 Score=82.78 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=31.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (899)
.+.+|.|+|.+||||||+|+.|++.+|+.++...|+.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r 39 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLR 39 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHH
Confidence 35789999999999999999999999987655555433
No 218
>PRK14530 adenylate kinase; Provisional
Probab=98.00 E-value=1.3e-05 Score=84.52 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=66.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r 598 (899)
.|.|.|++||||||+|+.|++.+|+..+++|++.........+ +.++ ....... .+..|..+.-..........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~--~~~~-~~~~~~~---~~~~g~~~~d~~~~~~l~~~ 78 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS--DMDT-EYDTPGE---YMDAGELVPDAVVNEIVEEA 78 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc--cccc-hHHHHHH---HHHcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999999999998853211110 0000 0001111 12233221111100000000
Q ss_pred CCccceeeccCCcEEEEEeecccch---hhh--hcCCEEEEEEcCchhhHHHHhhcC
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALHP---EIR--KSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~~---~l~--~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
....+-+|++|..-... .+. ...|..|+++++.+..+.|...|.
T Consensus 79 --------l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 79 --------LSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred --------HhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 01124578888433221 121 237899999999999988877664
No 219
>PRK12338 hypothetical protein; Provisional
Probab=97.99 E-value=1.1e-05 Score=89.30 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=34.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.|.+|.|+|+|||||||+|+.|+..+|...+..+|+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~ 41 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIRE 41 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHH
Confidence 589999999999999999999999999887766777665
No 220
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.99 E-value=8.8e-06 Score=84.09 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=45.3
Q ss_pred cCCEEEEEEcCchhhHHHHhhcCccccccccch------hhHHhhccchhhhhcccccCcccEEEcCC-CCCCC
Q 002620 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRND-FDPVL 694 (899)
Q Consensus 628 ~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~-~~~rl 694 (899)
.-|+.||++++.++-+.|..+| |+..+. .+|+..+...|..|++-...+-++.|+.+ +|...
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~R-----gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~ 194 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKR-----GRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVN 194 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHh-----CCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccC
Confidence 5689999999999888776664 555442 36888888889999887766777888744 44433
No 221
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.99 E-value=3.6e-05 Score=75.12 Aligned_cols=101 Identities=22% Similarity=0.265 Sum_probs=73.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccc------ccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~------~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (899)
.-|.|+|-+|+||||+|.+||+.+|...|++.++.+ ++++...---+|-+.+.+.|..+..+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg---------- 77 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG---------- 77 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC----------
Confidence 348999999999999999999999999999988754 4444444456777888887775433211
Q ss_pred hhcccccccccCCCcEEEEEccccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.+|=.-|..+|- ...||+++.|.+|...-..|.-.|-
T Consensus 78 --------------~IVDyHgCd~Fp---erwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 78 --------------NIVDYHGCDFFP---ERWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred --------------cEEeecccCccc---hhheeEEEEEecCchHHHHHHHHcC
Confidence 122222333331 2678999999999999988888775
No 222
>PRK14528 adenylate kinase; Provisional
Probab=97.99 E-value=2.6e-05 Score=80.49 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=68.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHH-HHhcCCceecccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNIS-DIRNGRRTKVPIFDLETGA 597 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~-~L~~g~~v~~P~yD~~~~~ 597 (899)
.|.|.||+||||||+|+.|++.+|+.++++|+..+..-... + . +...+. -+.+|..+.-........+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~-------~---~-~g~~~~~~~~~g~lvp~~~~~~~~~~ 71 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQ-------T---A-MGIEAKRYMDAGDLVPDSVVIGIIKD 71 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcC-------C---H-HHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 46789999999999999999999999999999986521110 0 0 001111 1223332211111111111
Q ss_pred cCCccceeeccCCcEEEEEeecccc-------hhhh---hcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 598 RSGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 598 r~~~~~~~~~~~~dVVIvEG~~~~~-------~~l~---~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
+. .......-+|++|.---. ..+. ...|..|+++.+.+..+.|...|-.
T Consensus 72 ~l-----~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 72 RI-----READCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred HH-----hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 11 001113468899953211 1111 2489999999999999999888753
No 223
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.98 E-value=3.4e-05 Score=77.89 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=78.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
...+.||-|.|++||||-|.|..+++.+|+..+|++++.|.-.... ++-.-..+.+. +.+|.-+..........+
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g~~I~~~---i~~G~iVP~ei~~~LL~~ 79 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERGALIKEI---IKNGDLVPVEITLSLLEE 79 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cChHHHHHHHH---HHcCCcCcHHHHHHHHHH
Confidence 3567899999999999999999999999999999999876433221 22222222222 223333222221111111
Q ss_pred cccccccccCCCcEEEEEccccc-------hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 002620 139 RIGSKVIKGASSGVVIVDGTYAL-------DARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~-------~~~l~~~~D~~I~Vda~~~~rl~R~i~RD~~~ 193 (899)
. ........-.++||.==- +..+....|+++|+||+.+++++|.+.|....
T Consensus 80 a----m~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~ 137 (195)
T KOG3079|consen 80 A----MRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN 137 (195)
T ss_pred H----HHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 1 111122223777875322 23344467999999999999999999998763
No 224
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.98 E-value=5.5e-05 Score=77.54 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=73.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhh-hcCCccccccchhhhhhcccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~ 142 (899)
.|.|.|+|||||||+|+.|++.++++.||+|+++++...... .+....... ..+.-+.-..+......+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t-------~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERT-------ELGEEIKKYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCC-------hHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 488999999999999999999999999999999885433221 122222222 223222222333334443332
Q ss_pred cccccCCCcEEEEEccccch---h----hh---hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 143 KVIKGASSGVVIVDGTYALD---A----RL---RSLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~----~l---~~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
. .... .+|++|.--.. . .+ ....|..+.++.+.+..+.|...|..
T Consensus 75 ~---d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 75 A---DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred h---cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 1 1112 57777764322 1 11 13568999999999999999888864
No 225
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.98 E-value=8.2e-05 Score=76.76 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
..+|+|.|+.||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999999885
No 226
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.97 E-value=3.4e-05 Score=80.32 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
...+|+|.|++||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446899999999999999999998765
No 227
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.96 E-value=2.4e-05 Score=84.32 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=71.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (899)
+|.++|.+||||||+|+.|++.++ +.+++.|.+...+..+.. ..+. .+.. ....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~----~~e~---~~~~--------------~~~~ 59 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKE----KYEE---FIRD--------------STLY 59 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhH----HhHH---HHHH--------------HHHH
Confidence 488999999999999999999873 445666655332211100 0000 0000 0000
Q ss_pred cccccccccCCCcEEEEEccccchh---hhh------cCCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhh
Q 002620 139 RIGSKVIKGASSGVVIVDGTYALDA---RLR------SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (899)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~---~l~------~~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~ 209 (899)
.+.. . ......||++|...... .+. ..-...||+++|.+.+.+|...|... ..++.++. ++.
T Consensus 60 ~i~~-~--l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~---~~~~~i~~---l~~ 130 (249)
T TIGR03574 60 LIKT-A--LKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK---IPNEVIKD---MYE 130 (249)
T ss_pred HHHH-H--HhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC---CCHHHHHH---HHH
Confidence 0000 0 11234688888765431 222 11236789999999999998877531 12334443 333
Q ss_pred hhcCCCc----CcCcEEEECC
Q 002620 210 KHIEPDL----HHAQIRINNR 226 (899)
Q Consensus 210 k~Iep~~----~~ADiII~N~ 226 (899)
+|-.|.. ..++++|+.+
T Consensus 131 r~e~p~~~~~wd~~~~~vd~~ 151 (249)
T TIGR03574 131 KFDEPGTKYSWDLPDLTIDTT 151 (249)
T ss_pred hhCCCCCCCCccCceEEecCC
Confidence 3333432 3488888765
No 228
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.95 E-value=3.6e-05 Score=78.29 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=33.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCcccccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV 100 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~ 100 (899)
...+|+|+|.+||||||+|+.|+..+. +.+++.|.+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~ 47 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNL 47 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHH
Confidence 446899999999999999999999872 5778999875543
No 229
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.95 E-value=1.8e-05 Score=79.94 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=32.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.|.|+|++||||||+++.|++.+|..+++.|.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~ 39 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS 39 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 366789999999999999999999999999988653
No 230
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.92 E-value=1.7e-05 Score=83.32 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=67.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~~~~~r 598 (899)
|.|.||+||||||+|+.|++.+|+.+||++|..+..-... .+ +...+.. +..|..+.--.......++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~----~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~ 70 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAG----TP-------LGKKAKEYMEKGELVPDEIVNQLVKER 70 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccc----cH-------HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999987421110 00 0111111 2233322111111111111
Q ss_pred CCccceeeccCCcEEEEEeecccc---hhhh---h-cCCEEEEEEcCchhhHHHHhhcC
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR---K-SLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~~l~---~-~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
.. .......-+|++|.---. ..+. . ..|..|+++.+.+..+.|...|-
T Consensus 71 i~----~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 71 LT----QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred Hh----cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 10 001113568999953322 1222 2 46899999999999998887764
No 231
>PLN02748 tRNA dimethylallyltransferase
Probab=97.91 E-value=4.6e-06 Score=96.90 Aligned_cols=107 Identities=24% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc--cccccccCC-CCCCccHHHHHHHHHhhhcCCccccccchhhh
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~-~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (899)
+...+|+|+||+||||||||..||..+++.+|++|. +|++++-.. .|..-+.....++|-++..-.+ .+...+|..
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e-~ysv~~F~~ 98 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSV-EFTAKDFRD 98 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCC-cCcHHHHHH
Confidence 455689999999999999999999999999999997 699876543 2333333334444444333221 122222222
Q ss_pred hhcccccccccCCCcEEEEEccccchhhhhc
Q 002620 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRS 167 (899)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~ 167 (899)
........+.....-.|||.|..++-..+..
T Consensus 99 ~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~ 129 (468)
T PLN02748 99 HAVPLIEEILSRNGLPVIVGGTNYYIQALVS 129 (468)
T ss_pred HHHHHHHHHHhcCCCeEEEcChHHHHHHHHc
Confidence 2221111223345568999999998765554
No 232
>PRK14531 adenylate kinase; Provisional
Probab=97.90 E-value=5e-05 Score=78.02 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=34.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~ 555 (899)
.|.|.||+||||||+|+.|++.+|+..+|++|..+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~ 40 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE 40 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence 5778999999999999999999999999999998753
No 233
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.90 E-value=2.6e-05 Score=77.34 Aligned_cols=112 Identities=20% Similarity=0.094 Sum_probs=65.6
Q ss_pred EECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccccc
Q 002620 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146 (899)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~ 146 (899)
|.||+||||||+|+.||+.+|+..|+++++.+.....+.+ --..+.+. +.+|..+.....-.....+....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~---~g~~i~~~---l~~g~~vp~~~v~~ll~~~l~~~--- 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSE---LGKQIQEY---LDNGELVPDELVIELLKERLEQP--- 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSH---HHHHHHHH---HHTTSS--HHHHHHHHHHHHHSG---
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhH---HHHHHHHH---HHhhccchHHHHHHHHHHHHhhh---
Confidence 6899999999999999999999999999976643322111 11122222 33444433333333333332221
Q ss_pred cCCCcEEEEEccccch------hh----hhcCCCEEEEEEcCHHHHHHHHHH
Q 002620 147 GASSGVVIVDGTYALD------AR----LRSLLDIRVAVVGGVHFSLISKVQ 188 (899)
Q Consensus 147 ~~~~~vVIvEG~~l~~------~~----l~~~~D~~I~Vda~~~~rl~R~i~ 188 (899)
....-+|++|.=--. .. .....|.+|+++++.+....|...
T Consensus 72 -~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 72 -PCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp -GTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred -cccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 234578888874432 11 234458999999999988777655
No 234
>PRK13946 shikimate kinase; Provisional
Probab=97.90 E-value=2.6e-05 Score=80.21 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=32.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (899)
+..|.++|++||||||+++.|++.||..+++.|...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~ 45 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI 45 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHH
Confidence 456889999999999999999999999999999753
No 235
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.89 E-value=2.4e-05 Score=77.79 Aligned_cols=36 Identities=33% Similarity=0.560 Sum_probs=29.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVG 99 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~ 99 (899)
+|.|+|.+||||||+|+.|+..+ | +.+++.|.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~ 41 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG 41 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh
Confidence 47899999999999999999988 5 455677776553
No 236
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.89 E-value=1.2e-05 Score=78.34 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
+|.+.|++||||||+|+.|+..+++.+++.|++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~ 36 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR 36 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence 577899999999999999999999999999998764
No 237
>PRK14526 adenylate kinase; Provisional
Probab=97.88 E-value=4.5e-05 Score=80.31 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=66.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~ 144 (899)
|+|.|++||||||+|+.|++.+|+..++++++.+.....+.+-. ..+.+.+ ..|.-+.-.........+...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g---~~i~~~~---~~g~lvpd~~~~~lv~~~l~~-- 74 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLG---KEIKQIV---ENGQLVPDSITIKIVEDKINT-- 74 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhh---HHHHHHH---HcCccCChHHHHHHHHHHHhc--
Confidence 78999999999999999999999999999998664322222110 1122221 122222111111111222211
Q ss_pred cccCCCcEEEEEccc-cch--hhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 002620 145 IKGASSGVVIVDGTY-ALD--ARLRSLL--DIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 145 ~~~~~~~vVIvEG~~-l~~--~~l~~~~--D~~I~Vda~~~~rl~R~i~RD 190 (899)
.....-+|+||.- -.. ..+...+ +..++++++.++.++|...|.
T Consensus 75 --~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 75 --IKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred --ccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence 1123457779873 222 2222221 356788999999999988874
No 238
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.88 E-value=6.5e-05 Score=77.49 Aligned_cols=59 Identities=10% Similarity=0.076 Sum_probs=38.2
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhcHHhhhhcCC-CcCcCcEE-EECC
Q 002620 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIR-INNR 226 (899)
Q Consensus 168 ~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~~~~p~~~k~Iep-~~~~ADiI-I~N~ 226 (899)
..|+.||++++++++++|...|..... ....++++.....|..++.. .+..+.++ |+++
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~ 185 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDAN 185 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEECC
Confidence 578999999999999999877753221 12234566667777776654 22334554 4544
No 239
>PRK13975 thymidylate kinase; Provisional
Probab=97.88 E-value=0.00016 Score=74.67 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=24.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCe
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCT 89 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~ 89 (899)
.+|.|.|+.||||||+++.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 579999999999999999999999853
No 240
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.86 E-value=4.1e-05 Score=78.49 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=74.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCC----CCCCccHHHH-HHHHHhhhcCCc----cccccchh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN----DLDSIDFDAL-VQNLQDLTEGKD----TLIPMFDY 134 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~----~p~s~d~~~l-~~~L~~l~~~~~----i~~p~~d~ 134 (899)
||.|+|..|||++|+|+.||+.||+.++|-+-+.......+ ..+.++.... ..++..+..+.. ...+..+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 79999999999999999999999999999855433222221 1223333322 222222221110 01111111
Q ss_pred hhhhcccccccccCCCcEEEEEccccchhhhhcCC--CEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhh---c-HHh
Q 002620 135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL--DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI---F-PLF 208 (899)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~--D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~---~-p~~ 208 (899)
................-+|+.|-.+.. +.... .+.|||.+|.+.|++|.+.|.......+...+... . ..+
T Consensus 81 -~~~~~~~~i~~la~~~~~Vi~GR~a~~--il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~~~~ 157 (179)
T PF13189_consen 81 -IFRAQSEIIRELAAKGNCVIVGRCANY--ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKRRRAYY 157 (179)
T ss_dssp -HHHHHHHHHHHHHH---EEEESTTHHH--HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccCCEEEEecCHhh--hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 001000011111222355666666543 22333 38999999999999999999765554444444321 1 122
Q ss_pred hhhc---CCCcCcCcEEEECC
Q 002620 209 RKHI---EPDLHHAQIRINNR 226 (899)
Q Consensus 209 ~k~I---ep~~~~ADiII~N~ 226 (899)
..+. ......-|+||+++
T Consensus 158 ~~~~~~~~~d~~~YDLvint~ 178 (179)
T PF13189_consen 158 KYYTGIDWGDPSNYDLVINTS 178 (179)
T ss_dssp HHH-SS-TTBGGG-SEEEEES
T ss_pred HHHhCCCCCCchhceEEEeCc
Confidence 2222 34567778888865
No 241
>PRK14532 adenylate kinase; Provisional
Probab=97.86 E-value=4.3e-05 Score=78.52 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
|.+.|++||||||+|+.|++.+|+..+|+|+..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~ 37 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRA 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHH
Confidence 56799999999999999999999999999999875
No 242
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.85 E-value=5.9e-05 Score=90.24 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (899)
.+...|.+.|.+||||||+++.||+.||.++||+|.+..
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie 42 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIE 42 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHH
Confidence 345679999999999999999999999999999999754
No 243
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.85 E-value=8e-05 Score=75.86 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=32.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (899)
+..|.|.|++||||||+++.|+..++..+++.|...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i 39 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI 39 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchH
Confidence 335788999999999999999999999999999754
No 244
>PRK02496 adk adenylate kinase; Provisional
Probab=97.85 E-value=5e-05 Score=77.87 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=32.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.|.|.||+||||||+|+.|++.+|+..+++|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 477899999999999999999999999999988764
No 245
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.84 E-value=4.7e-05 Score=80.21 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=33.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.|.|.|++||||||+|+.|++.+|+..+|+++..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence 377899999999999999999999999999998774
No 246
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.84 E-value=9e-05 Score=81.49 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=35.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCe-EEecCcccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~ 98 (899)
+.|++|.|+|++||||||+|..||..||.. +|++|.+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re 129 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE 129 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 568999999999999999999999999986 899998753
No 247
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=97.82 E-value=0.00012 Score=74.10 Aligned_cols=160 Identities=16% Similarity=0.242 Sum_probs=111.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCcccc----ccc-------c------CCCCCCccHHHHHHHH
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV----GVD-------E------GNDLDSIDFDALVQNL 118 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~----~~~-------~------~~~p~s~d~~~l~~~L 118 (899)
+..+|+|+|.||+|-||++..+.+.+. +.-|..|.|++ .++ + ...|++-|+..|.+.+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f 83 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF 83 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence 346899999999999999999988764 45688899866 111 1 1357888999998888
Q ss_pred HhhhcCCccccccchhhhhhcc----------cccccccCCCcEEEEEccccch----hhhhcCCCEEEEEEcCHHHHHH
Q 002620 119 QDLTEGKDTLIPMFDYQQKNRI----------GSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI 184 (899)
Q Consensus 119 ~~l~~~~~i~~p~~d~~~~~~~----------~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~~~rl~ 184 (899)
...-+...-....|-+...+.+ .++.. ..+.+++..||..... -.+...||+.|-|..-.++...
T Consensus 84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWI 162 (289)
T COG3954 84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWI 162 (289)
T ss_pred HHhcccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHH
Confidence 7664433222222222222211 22111 1236899999987654 4677889999888766777777
Q ss_pred HHHHhccCCcc-CHHHHHHhh---cHHhhhhcCCCcCcCcE
Q 002620 185 SKVQYDIGDSC-SLDSLIDSI---FPLFRKHIEPDLHHAQI 221 (899)
Q Consensus 185 R~i~RD~~~r~-~~e~~~~~~---~p~~~k~Iep~~~~ADi 221 (899)
..+.||..+|+ +.+..++.+ ++.|-.||-|.-.+.++
T Consensus 163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThI 203 (289)
T COG3954 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHI 203 (289)
T ss_pred HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccc
Confidence 77889988884 777777754 78889999998877776
No 248
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.82 E-value=5.5e-05 Score=76.99 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCC
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGC 543 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~ 543 (899)
+|+|.||+||||||+++.|+..++.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 6889999999999999999987653
No 249
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.80 E-value=3.9e-05 Score=81.74 Aligned_cols=122 Identities=13% Similarity=0.189 Sum_probs=70.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHH-HhcCCceecccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 593 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~ 593 (899)
+.|+-|.|.||+||||||+|+.|++.+|+.++|+|+.++.+.... .. + .+.+.. +.+|..+.-.....
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~---t~-----l---g~~i~~~~~~G~lvpd~iv~~ 72 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAK---TT-----I---GKEIQKVVTSGNLVPDNLVIA 72 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcC---Ch-----H---HHHHHHHHHcCCcCCHHHHHH
Confidence 356668899999999999999999999999999999998532111 00 0 111111 22232111111000
Q ss_pred cccccCCccceeeccCCcEEEEEeecccch---hhh--hcCCEEEEEEcCchhhHHHHhhcC
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR--KSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~---~l~--~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
...++.. .. .......+|++|.---.. .+. ...|..++++.+.++.+.|...|.
T Consensus 73 lv~~~l~--~~-~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 73 IVKDEIA--KV-TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHHHHHH--hh-ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 0011110 00 011235688999532211 111 246789999999999888887764
No 250
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.80 E-value=5.2e-05 Score=76.03 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
|.+.||+||||||+|+.|+..++..+++.|+|+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~ 35 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPA 35 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccCh
Confidence 45789999999999999999999999999999753
No 251
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.79 E-value=0.00016 Score=79.57 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (899)
..+.+|+|+|++||||||+++.|+. +|..++
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~ 34 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED-LGYYCV 34 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence 3456899999999999999999964 677665
No 252
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=4e-05 Score=83.66 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcc--ccccccCCC-CCCccHHHHHHHHHhhhc-CCccccccchhhh
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTE-GKDTLIPMFDYQQ 136 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-p~s~d~~~l~~~L~~l~~-~~~i~~p~~d~~~ 136 (899)
+-++|+|.|++|||||-||--||.+++..+|++|.+ |++++-... +...+..-+.++|-.... ..+...+.|..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~-- 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED-- 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH--
Confidence 457999999999999999999999999999999994 887653221 111122222233222111 11111111111
Q ss_pred hhcccccccccCCCcEEEEEccccchhhhhcC---------------------CC-EEEEEEcCHHHHHHHHHHh
Q 002620 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSL---------------------LD-IRVAVVGGVHFSLISKVQY 189 (899)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~---------------------~D-~~I~Vda~~~~rl~R~i~R 189 (899)
........+.....-.+|+.|...+-..+... +| ..+||+++..+-..|.-.|
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~R 158 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKR 158 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHH
Confidence 11111112233344567777777766433322 33 5689999999887777665
No 253
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.79 E-value=0.0002 Score=74.30 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=23.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (899)
..+|+|.|++||||||+++.|++.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999977
No 254
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.78 E-value=0.00016 Score=73.77 Aligned_cols=151 Identities=17% Similarity=0.072 Sum_probs=75.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCC--eEEecCccccccccC--CCCCCc-------c-HHHHHHHHHhhhcCCccccc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVGVDEG--NDLDSI-------D-FDALVQNLQDLTEGKDTLIP 130 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~~~~~~--~~p~s~-------d-~~~l~~~L~~l~~~~~i~~p 130 (899)
.||.+.|+|.|||||+|+.|++.+.. ..++.|.|...+..+ .....+ + -..+...+..+..+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA------ 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH------
Confidence 48999999999999999999999974 467889986632211 001111 0 01111111111000
Q ss_pred cchhhhhhcccccccccCCCcEEEEEccccch----hhh---hcCCC-EEEEEEcCHHHHHHHHHHhccCCccCHHHHHH
Q 002620 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARL---RSLLD-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (899)
Q Consensus 131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l---~~~~D-~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~ 202 (899)
. ........-||+|..+.-. ..+ ..-++ +.|-|.||.++..+|-..|-....+ ..+
T Consensus 76 -----i-------aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G----~a~ 139 (174)
T PF07931_consen 76 -----I-------AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG----LAA 139 (174)
T ss_dssp -----H-------HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT----HHH
T ss_pred -----H-------HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH----HHH
Confidence 0 0001123466777665433 222 22334 5678899999888887777532222 112
Q ss_pred hhcHHhhhhcCCCcCcCcEEEECCCCCchhhhhhhccc
Q 002620 203 SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240 (899)
Q Consensus 203 ~~~p~~~k~Iep~~~~ADiII~N~~~~~~~~~~~~lk~ 240 (899)
.+...-.+ -..-|+-|+.+..+..++..-+++.
T Consensus 140 ~q~~~Vh~-----~~~YDleVDTs~~sp~ecA~~I~~~ 172 (174)
T PF07931_consen 140 WQAEHVHE-----GGRYDLEVDTSATSPEECAREILAR 172 (174)
T ss_dssp HHTTGGGT-----T---SEEEETTSS-HHHHHHHHHTT
T ss_pred HHHhhccc-----CCCCCEEEECCCCCHHHHHHHHHHH
Confidence 22211111 2357899999987777777766654
No 255
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.76 E-value=4.5e-05 Score=76.46 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=69.6
Q ss_pred CCCcHHHHHHHHHHHhCCeEEecCccccccccCCCC---CCccHHHHHHHHHhhhcCCccccccchhhhhhccccccccc
Q 002620 71 SGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKG 147 (899)
Q Consensus 71 sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p---~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~ 147 (899)
+||||||+++.||+.||++++|+|.+........-. ...+.+.+++. ....... . ..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~------------------E~~~l~~-l-~~ 60 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFREL------------------ESEALRE-L-LK 60 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHH------------------HHHHHHH-H-HC
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHH------------------HHHHHHH-H-hc
Confidence 699999999999999999999999975532221000 00111111110 0000000 0 01
Q ss_pred CCCcEEEEE-ccccchhhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCc-cCH------HHHHHhhcHHhhhhcCCCc
Q 002620 148 ASSGVVIVD-GTYALDARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSL------DSLIDSIFPLFRKHIEPDL 216 (899)
Q Consensus 148 ~~~~vVIvE-G~~l~~~~l~---~~~D~~I~Vda~~~~rl~R~i~RD~~~r-~~~------e~~~~~~~p~~~k~Iep~~ 216 (899)
.. ..||.- |-.+..+... ...-.+|||+++++...+|...++.... ... ........|.|.+
T Consensus 61 ~~-~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~------ 133 (158)
T PF01202_consen 61 EN-NCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQ------ 133 (158)
T ss_dssp SS-SEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHH------
T ss_pred cC-cEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHh------
Confidence 11 344544 4444433222 3346899999999998888877665111 111 1122233566666
Q ss_pred CcCcEEEECCCC
Q 002620 217 HHAQIRINNRFV 228 (899)
Q Consensus 217 ~~ADiII~N~~~ 228 (899)
.||++++.+..
T Consensus 134 -~a~~~v~~~~~ 144 (158)
T PF01202_consen 134 -AADIVVDTDGS 144 (158)
T ss_dssp -HSSEEEETSSC
T ss_pred -cCeEEEeCCCC
Confidence 68999988843
No 256
>PLN02459 probable adenylate kinase
Probab=97.74 E-value=0.00017 Score=78.02 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=71.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHh-hhcCCccccccchhhhhhccc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIG 141 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~ 141 (899)
..|.|.|++||||||+|+.|++.+|+..|+++++.+.....+.+ +...+.. +..|.-+.-.........+..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~-------lg~~i~~~~~~G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGP-------LGAQLKEIVNQGKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccch-------hHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999987643222211 1112222 222322222222222222211
Q ss_pred ccccccCCCcEEEEEccccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 142 SKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.. ......-+|+||.=--. ..+. ...|.+|+++++.++.+.|...|.
T Consensus 103 ~~--~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 103 AG--EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred cc--cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 10 00123568888863322 1222 236899999999999999888774
No 257
>PRK14529 adenylate kinase; Provisional
Probab=97.72 E-value=0.00017 Score=76.54 Aligned_cols=116 Identities=13% Similarity=0.004 Sum_probs=71.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (899)
.|.|.|++||||||+|+.|++.+|...|++.++.+.....+.+- -..+.+.+ ..|.-+...........+...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~l---g~~i~~~i---~~G~lvpdei~~~lv~~~l~~- 74 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTEL---GKKAKEYI---DRGDLVPDDITIPMILETLKQ- 74 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChH---HHHHHHHH---hccCcchHHHHHHHHHHHHhc-
Confidence 38889999999999999999999999999998877543322221 11122222 223322222222222222211
Q ss_pred ccccCCCcEEEEEccccch---hhh-------hcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 144 VIKGASSGVVIVDGTYALD---ARL-------RSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l-------~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.. ..-+|+||.=--. ..+ ....|.+|+++++.++.+.|...|.
T Consensus 75 ---~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 75 ---DG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred ---cC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 11 3458888863322 111 1347999999999999999988874
No 258
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.72 E-value=9.7e-05 Score=75.26 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=31.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc--ccccccccch
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKS 554 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~--vislDdfy~~ 554 (899)
.+|.++|++||||||+|+.|++.++.. .++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 378899999999999999999988644 4578888764
No 259
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.72 E-value=0.00021 Score=73.19 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=32.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (899)
-+++|.|++||||||+++.|+..++...++.|+++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~ 39 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHP 39 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCC
Confidence 368999999999999999999999998999998754
No 260
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.70 E-value=0.00012 Score=91.05 Aligned_cols=38 Identities=32% Similarity=0.698 Sum_probs=36.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~ 555 (899)
++|+|+||+||||||+|+.||+.|+..+++++.+|+.-
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 69999999999999999999999999999999999973
No 261
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.69 E-value=0.00037 Score=71.49 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---CCeEEec
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g~~vI~~ 93 (899)
+|+|.|+.||||||+++.|++.+ |..++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 69999999999999999999988 5544433
No 262
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.00014 Score=76.68 Aligned_cols=39 Identities=36% Similarity=0.556 Sum_probs=35.0
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhCC-eEEecCcc
Q 002620 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENY 96 (899)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~-~vI~~D~~ 96 (899)
++..|.+|.|.|+||.||||+|..||..||+ .+|++|.+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 4567899999999999999999999999997 57888875
No 263
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.65 E-value=0.00019 Score=74.79 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=32.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.+.+|.|+|.+||||||+|+.|+..++..++..-|+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence 467899999999999999999999999766555555443
No 264
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.63 E-value=0.00034 Score=71.88 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (899)
+.+|.|.||+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999998864
No 265
>PRK13808 adenylate kinase; Provisional
Probab=97.62 E-value=0.00015 Score=81.08 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=65.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~~~~~r 598 (899)
|.|.||+||||||+|..|++.+|..+||+||..+.+-.. ..+. ...+.. +..|..+.--.......++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~----~s~~-------g~~~~~~~~~G~lVPdeiv~~li~e~ 71 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAA----GTPV-------GLKAKDIMASGGLVPDEVVVGIISDR 71 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhc----CChh-------hHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 567999999999999999999999999999998742110 1110 011111 1222221100000000111
Q ss_pred CCccceeeccCCcEEEEEeecccchh---h---hh----cCCEEEEEEcCchhhHHHHhhc
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALHPE---I---RK----SLDLWIAVVGGVHSHLISRVQR 649 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~~~---l---~~----~~D~~I~vd~~~d~rl~Rri~R 649 (899)
.. ......-+||+|.---.++ + .. ..|+.|+++.+.++.+.|...|
T Consensus 72 l~-----~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 72 IE-----QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred Hh-----cccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 10 0011245788885533221 1 11 4799999999999999998776
No 266
>PLN02842 nucleotide kinase
Probab=97.61 E-value=0.00018 Score=84.18 Aligned_cols=115 Identities=15% Similarity=0.031 Sum_probs=65.5
Q ss_pred EECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhhhcccccccc
Q 002620 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146 (899)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~ 146 (899)
|.|++||||||+|+.|++.+|..+|+++++.+.....+.+ --..+.+.+ .+|..+....+.....++.... .
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~---iG~~Ire~l---~~G~lvPdeiv~~ll~drl~~~--~ 73 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTD---IGKRAKEFM---NSGRLVPDEIVIAMVTGRLSRE--D 73 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCH---HHHHHHHHH---hCCCCCcHHHHHHHHHHHHhCc--c
Confidence 7899999999999999999999999999976542222111 111222222 2222211111111122222110 0
Q ss_pred cCCCcEEEEEccccch---hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 147 GASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 147 ~~~~~vVIvEG~~l~~---~~l---~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
.. ..-+|+||.---. ..+ ....|++|+++++.++.+.|...|.
T Consensus 74 ~~-~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 74 AK-EKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred cc-CCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 01 2236669942211 122 2357999999999999998877664
No 267
>PRK13947 shikimate kinase; Provisional
Probab=97.59 E-value=0.00024 Score=71.64 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=31.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (899)
|.|.|++||||||+|+.|++.||..+++.|.+..
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~ 37 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIE 37 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhh
Confidence 6789999999999999999999999999998754
No 268
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00018 Score=72.31 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=72.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCC---cccccHHHHHHHHHHHhcCCceecccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDD---FSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~---p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (899)
.|+|+|.+|.||||+|+.|+ .+|..++++-+|......-. .+|. ---.|.+.+...+..+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~-~~de~r~s~~vD~d~~~~~le~~~~------------- 66 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYT-EYDELRKSVIVDVDKLRKRLEELLR------------- 66 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCee-ccCCccceEEeeHHHHHHHHHHHhc-------------
Confidence 68999999999999999999 79999999888876432111 1111 223577888877776421
Q ss_pred cccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcCccccccccc
Q 002620 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (899)
Q Consensus 596 ~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~ 659 (899)
..-.|+||.++- +.+.+|+.|.+.++++.-..|... ||++.+
T Consensus 67 --------------~~~~Ivd~H~~h---l~~~~dlVvVLR~~p~~L~~RLk~-----RGy~~e 108 (180)
T COG1936 67 --------------EGSGIVDSHLSH---LLPDCDLVVVLRADPEVLYERLKG-----RGYSEE 108 (180)
T ss_pred --------------cCCeEeechhhh---cCCCCCEEEEEcCCHHHHHHHHHH-----cCCCHH
Confidence 134567776652 333789999999998877666554 566554
No 269
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.58 E-value=0.00022 Score=72.68 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=60.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc--ccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccc-cc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL-ET 595 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~--vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~-~~ 595 (899)
+|.|+||+||||||+++.|+..++.. +.....++.. . ...+-.+-...+.+.+. .....+.-..+..+-. .-
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITR-P-ASAGGENHIALSTEEFD---HREDGGAFALSWQAHGLSY 77 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEccc-C-CCCCCccccccCHHHHH---HHHHCCCEEEEEeecCccc
Confidence 67899999999999999999987532 1111111110 0 00000000011111111 2222332222222100 00
Q ss_pred cccCCccceeeccCCcEEEEEeecccchhhhhcCC--EEEEEEcCchhhHHHHhhcC
Q 002620 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD--LWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 596 ~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D--~~I~vd~~~d~rl~Rri~RD 650 (899)
+... ...........+|++|.-...+.++..+. ..||++++.+....|...|.
T Consensus 78 g~~~--~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 78 GIPA--EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred cChH--HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 0000 00001123457888887554455544332 68899999998888877763
No 270
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.57 E-value=0.00014 Score=75.67 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHh---CCeEEecCcccccc
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV 100 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~ 100 (899)
...|.+|.++|++||||||++..+...+ ++.+|+.|.|...+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 4678999999999999999999999987 58889999986543
No 271
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.57 E-value=0.00032 Score=76.22 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=37.3
Q ss_pred EEEEEEcCHHHHHHHHHHhccCCc-cCHHHHHHhhcHHhhhhcCCCcCcCcEEEECCCCC
Q 002620 171 IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVS 229 (899)
Q Consensus 171 ~~I~Vda~~~~rl~R~i~RD~~~r-~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~~~~ 229 (899)
.++|++|+.++-++|...-....- .......+. ...+++.++|-++.||+||+.+.++
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~-I~~Er~~L~~lr~~Ad~vIDTs~l~ 142 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRRHPLSSDGSLLEA-IEKERELLEPLRERADLVIDTSNLS 142 (284)
T ss_pred EEEEEECChHHHHHHHHhccCCCCCCCCCCcHHH-HHHHHHHHHHHHHhCCEEEECCCCC
Confidence 468999999998888754222111 110011122 4456677788899999999999765
No 272
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.57 E-value=0.00036 Score=70.44 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=27.9
Q ss_pred ECCCCCcHHHHHHHHHHHhCCeEEecCccc
Q 002620 68 GGPSGSGKTSLAEKLASVIGCTLISMENYR 97 (899)
Q Consensus 68 tG~sGSGKSTlA~~La~~Lg~~vI~~D~~~ 97 (899)
.|+|||||||+++.|+..+|...++.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCC
Confidence 499999999999999999999999999864
No 273
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.56 E-value=0.00041 Score=73.48 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=37.1
Q ss_pred CCEEEEEEcCchhhHHHHhhcCccccccccchhhHHhhccchhhhhccc-ccCcccEEEc
Q 002620 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP-HLVHAHLKIR 687 (899)
Q Consensus 629 ~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~I~p-~~~~ADivI~ 687 (899)
.|+.||++++++..+.|...|.... .......|+..+...|.++..+ ....+++++-
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~--e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~i 200 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPH--EMKVTSAYLQDIENAYKKTFLPEISEHSEVLQY 200 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCch--hhcccHHHHHHHHHHHHHHHHHhhccCCCEEEE
Confidence 5899999999999998876665221 1111245777777888777654 2334566653
No 274
>PLN02674 adenylate kinase
Probab=97.55 E-value=0.0004 Score=74.61 Aligned_cols=121 Identities=9% Similarity=-0.039 Sum_probs=68.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~ 594 (899)
..+..|.|.||+||||||.|+.|++.+|+..||+++..+.+-... .+-. ..+. .-+..|+.+.-......
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~----s~~g---~~i~---~~~~~G~lvpd~iv~~l 98 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TPLG---IKAK---EAMDKGELVSDDLVVGI 98 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhcc----Chhh---HHHH---HHHHcCCccCHHHHHHH
Confidence 334567789999999999999999999999999999998531110 0000 0111 11223332211110000
Q ss_pred ccccCCccceeeccCCcEEEEEeecccchh---hh-------hcCCEEEEEEcCchhhHHHHhhcC
Q 002620 595 TGARSGFKELEVSEDCGVIIFEGVYALHPE---IR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 595 ~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~---l~-------~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
..++. .......-+|++|.=--... +. -..|..|+++.+.+..+.|...|-
T Consensus 99 v~~~l-----~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 99 IDEAM-----KKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HHHHH-----hCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 01111 00011245777776532211 11 247899999999998888877664
No 275
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00016 Score=73.18 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (899)
.+.|.||.|.|++||||-|.|.++++.++...+|+.|..+.+.... ++--..++. ..+++|..|..-+...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~------gse~g~~I~---~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA------GSERGALIK---EIIKNGDLVPVEITLS 75 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc------cChHHHHHH---HHHHcCCcCcHHHHHH
Confidence 3568899999999999999999999999999999999998643221 111111111 2223343322211111
Q ss_pred cccccCCccceeeccCCcEEEEEeecc-------cchhhhhcCCEEEEEEcCchhhHHHHhhcCcc
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEGVYA-------LHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG~~~-------~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~ 652 (899)
-..+ ++.......-++++|.== ++..+....++.+|++++.++++.|.+.|+..
T Consensus 76 LL~~-----am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 76 LLEE-----AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHH-----HHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 0000 000011112266666542 12233435789999999999999999999865
No 276
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.55 E-value=0.0005 Score=71.55 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=32.7
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccc
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK 553 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~ 553 (899)
....+.+|+|+|++||||||+++.|+..+ ++.+++.|++..
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 34678999999999999999999999977 245566666653
No 277
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.53 E-value=0.00038 Score=72.49 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
...+|+|.|||||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999999765
No 278
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.53 E-value=5e-05 Score=77.82 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=67.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~-L~~g~~v~~P~yD~~~~~r 598 (899)
|.|.|||||||||+|+.|++.++.+.+|+|++++...... + -+....+. +.+|+-+.--.++.....|
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-------t----~lg~~~k~~i~~g~lv~d~i~~~~v~~r 71 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-------T----ELGEEIKKYIDKGELVPDEIVNGLVKER 71 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-------C----hHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence 6678999999999999999999999999999998632111 1 01111111 2333322212222222222
Q ss_pred CCccceeeccCCcEEEEEeecccc---h----hhh---hcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 599 SGFKELEVSEDCGVIIFEGVYALH---P----EIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 599 ~~~~~~~~~~~~dVVIvEG~~~~~---~----~l~---~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
... .....-+|++|.=-.- . .+. ...|..+.++.+.+.-+.|..-|..
T Consensus 72 l~~-----~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 72 LDE-----ADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred HHh-----hcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 210 0111267777765321 1 111 2567888888888888888777754
No 279
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.52 E-value=0.00029 Score=75.42 Aligned_cols=122 Identities=18% Similarity=0.303 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccccccccCCCCCCccHHHHHHHHHhhh
Q 002620 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT 122 (899)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~ 122 (899)
....+..+.+..++..+|||||++|+|||||...|...+ | +.|+..|.=-+ .. ++.. -=|+-++.++ .
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp-~t-GGAl-LGDRiRM~~~----~ 87 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP-FT-GGAL-LGDRIRMQEL----S 87 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG-CC----S-S--GGGCHHH----H
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC-CC-CCcc-cccHHHhcCc----C
Confidence 334455555666778999999999999999999998866 2 56777775211 00 0000 0011111111 1
Q ss_pred cCCcccccc---------chhhhhhcccccccccCCCcEEEEEccccch--hhhhcCCCEEEEEEcC
Q 002620 123 EGKDTLIPM---------FDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG 178 (899)
Q Consensus 123 ~~~~i~~p~---------~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~ 178 (899)
....+.+.. ....+.+. .........++||+|-..+.+ ..+.+.+|..++|-.|
T Consensus 88 ~d~~vfIRS~atRG~lGGls~~t~~~--v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 88 RDPGVFIRSMATRGSLGGLSRATRDA--VRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp TSTTEEEEEE---SSHHHHHHHHHHH--HHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred CCCCEEEeecCcCCCCCCccHhHHHH--HHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 111122211 11111111 123344567899999999887 4677999999999888
No 280
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.51 E-value=0.00037 Score=71.91 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=33.8
Q ss_pred cCCEEEEEEcCchhhHHHHhhcCccccccccchhhHHhhccchhhhhccc
Q 002620 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677 (899)
Q Consensus 628 ~~D~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~q~~~~v~p~~~~~I~p 677 (899)
..|..||+++++++++.|...|.... .......|...+...|..++..
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~~~~~~~~~~l~~~y~~~~~~ 171 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPE--EQGIPLDYLEDLHEAYEKWFLP 171 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHh--hhcCCHHHHHHHHHHHHHHHhh
Confidence 47899999999999988876654211 1111245777788888888765
No 281
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.51 E-value=0.00019 Score=82.96 Aligned_cols=39 Identities=41% Similarity=0.513 Sum_probs=35.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCe-EEecCcccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~ 98 (899)
.+|.+|.+.|++||||||+|..||..+|+. +|++|.+..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 468999999999999999999999999986 789998643
No 282
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.50 E-value=0.00033 Score=71.88 Aligned_cols=167 Identities=17% Similarity=0.091 Sum_probs=75.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC----CeEEecCcccccc-ccCCCCCCccHHHHHHHHHhhhcCCccccccchhhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENYRVGV-DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg----~~vI~~D~~~~~~-~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (899)
+.+|.|+||+|||||||++.|.+.+. .++-++-.-.+.- .++.+.--...+.+.+. ...+.=+.+..++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~---~~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERM---IKAGEFIEYGEYDGNY 78 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHH---HHTTHEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhh---hccccEEEEeeecchh
Confidence 45788999999999999999988764 2333333322211 11111101122222222 2222223332232211
Q ss_pred hhccccc-ccccCCCcEEEEEccccchhhhhc--CCCEEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhhhhcC
Q 002620 137 KNRIGSK-VIKGASSGVVIVDGTYALDARLRS--LLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIE 213 (899)
Q Consensus 137 ~~~~~~~-~~~~~~~~vVIvEG~~l~~~~l~~--~~D~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k~Ie 213 (899)
+...... ........++|++...-.-..+.. ..=+.|||.++....+++++.+.... +.+.+.++.. ..++.+.
T Consensus 79 YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~--~~~~i~~r~~-~~~~~~~ 155 (183)
T PF00625_consen 79 YGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDE--SEEEIEERLE-RAEKEFE 155 (183)
T ss_dssp EEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHC--HHHHHHHHHH-HHHHHHG
T ss_pred hhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccc--cHHHHHHHHH-HHHHHHh
Confidence 1110000 001123445666544322233332 33367999888777788877653221 2222222221 1122121
Q ss_pred CCcCcCcEEEECCCCCchhhhhhhc
Q 002620 214 PDLHHAQIRINNRFVSSFREAIYKL 238 (899)
Q Consensus 214 p~~~~ADiII~N~~~~~~~~~~~~l 238 (899)
.... .|.+|.|+ ++++....|
T Consensus 156 ~~~~-fd~vi~n~---~le~~~~~l 176 (183)
T PF00625_consen 156 HYNE-FDYVIVND---DLEEAVKEL 176 (183)
T ss_dssp GGGG-SSEEEECS---SHHHHHHHH
T ss_pred Hhhc-CCEEEECc---CHHHHHHHH
Confidence 1112 89999998 444444333
No 283
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.50 E-value=0.00046 Score=84.36 Aligned_cols=45 Identities=31% Similarity=0.393 Sum_probs=37.8
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHh-----CCeEEecCccccccc
Q 002620 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVD 101 (899)
Q Consensus 57 ~~~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~~ 101 (899)
....++.+|.++|.+||||||+|+.|++.| ++.+++.|.+...+.
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~ 504 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN 504 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC
Confidence 344568999999999999999999999987 357899999877654
No 284
>PHA00729 NTP-binding motif containing protein
Probab=97.49 E-value=0.00073 Score=71.54 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=66.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCe--EEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhhh
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (899)
.+...|.|+|++|+||||+|..|+..++.. .++.| +..+......--++.+.+...|.....+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~--~~~~d~~~~~~fid~~~Ll~~L~~a~~~~------------ 80 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK--DDAWQYVQNSYFFELPDALEKIQDAIDND------------ 80 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccch--hhHHhcCCcEEEEEHHHHHHHHHHHHhcC------------
Confidence 355679999999999999999999987632 23333 22222222223356666666655432221
Q ss_pred hcccccccccCCCcEEEEEcccc-----------------chhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 138 NRIGSKVIKGASSGVVIVDGTYA-----------------LDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l-----------------~~~~l~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
...+++|+|+..+ +.+.++..+++.++..++++....+...|.
T Consensus 81 ----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 81 ----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred ----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 1124667776222 224556678999999999888877766654
No 285
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00083 Score=68.46 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
...+|.|+||||+||||+++.|-+..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC
Confidence 346899999999999999999987653
No 286
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.48 E-value=0.00017 Score=79.74 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=33.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFK 553 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l-~~~vislDdfy~ 553 (899)
+.+|.+.|++||||||+|+.|++.+ +...++.|++..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH
Confidence 4578889999999999999999999 899999999754
No 287
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00056 Score=74.25 Aligned_cols=118 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccccccccCCCCCCc--cHHHHHHHHHhhh
Q 002620 50 KSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSI--DFDALVQNLQDLT 122 (899)
Q Consensus 50 ~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~p~s~--d~~~l~~~L~~l~ 122 (899)
+++..+....++..+|||||++|+||||+...|...| | +.||..|.=.. . .-+++ |.-++.+. .
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp-~----TGGsiLGDRiRM~~~----~ 109 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP-F----TGGSILGDRIRMQRL----A 109 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC-C----CCccccccHhhHHhh----c
Confidence 3444455667788899999999999999999998877 3 56777765211 0 00111 11111111 1
Q ss_pred cCCccccc---------cchhhhhhcccccccccCCCcEEEEEccccch--hhhhcCCCEEEEEEcC
Q 002620 123 EGKDTLIP---------MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG 178 (899)
Q Consensus 123 ~~~~i~~p---------~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~ 178 (899)
....+.+. -++..+.+. .........++||+|-..+.+ ..+.+.+|..++|-.|
T Consensus 110 ~~~~vFiRs~~srG~lGGlS~at~~~--i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 110 VDPGVFIRSSPSRGTLGGLSRATREA--IKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred cCCCeEEeecCCCccchhhhHHHHHH--HHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 11111110 011111111 123445678899999999987 4677999999999887
No 288
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.00011 Score=72.16 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=40.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFK 561 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~ 561 (899)
.-+.+|-|.|++||||||+++.|++.|++..+..|||+.+.......
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~ 56 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMT 56 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHh
Confidence 44668889999999999999999999999999999999986544333
No 289
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.45 E-value=0.00036 Score=76.22 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=54.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCccccccchhhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (899)
|.+|.|+|.+||||||+|+.|++.+. +.+++-|.+.- ......++......+..+....
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~--~~~~y~~~~~Ek~~R~~l~s~v-------------- 64 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI--DRNDYADSKKEKEARGSLKSAV-------------- 64 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSSS--GGGHHHHHHHHHHHH--------------
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc--chhhhhchhhhHHHHHHHHHHH--------------
Confidence 56899999999999999999998762 44566444431 1111112222222222222110
Q ss_pred hhcccccccccCCCcEEEEEccccchhh------h---hcCCCEEEEEEcCHHHHHHHHHHhccCCc
Q 002620 137 KNRIGSKVIKGASSGVVIVDGTYALDAR------L---RSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (899)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~------l---~~~~D~~I~Vda~~~~rl~R~i~RD~~~r 194 (899)
.. ......+||+|+.+-+... + ...--..||++++.+.++.|-..|....+
T Consensus 65 ----~r---~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~ 124 (270)
T PF08433_consen 65 ----ER---ALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPER 124 (270)
T ss_dssp ----HH---HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--
T ss_pred ----HH---hhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCC
Confidence 00 0122469999999855421 1 11122679999999999999988875433
No 290
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.45 E-value=0.00025 Score=70.93 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=29.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy 552 (899)
++.+|-++|.+||||||+|+.|...| | +.+++.|.+-
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 47899999999999999999999988 3 4466666554
No 291
>PRK13948 shikimate kinase; Provisional
Probab=97.45 E-value=0.00041 Score=71.44 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=34.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (899)
..+..|.+.|.+||||||+++.|++.+|..++++|.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie 46 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIE 46 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHH
Confidence 456778899999999999999999999999999997654
No 292
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.45 E-value=0.0002 Score=73.73 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=26.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (899)
+|+|.||+||||||+++.|+..++..++..|.+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~ 36 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEcCEE
Confidence 678899999999999999998877655544544
No 293
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.44 E-value=0.00045 Score=81.60 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=33.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (899)
.|+|+|++||||||+++.|++.+|+.++++|.+...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence 489999999999999999999999999999997543
No 294
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.43 E-value=0.00057 Score=80.93 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccccccCCCCCCccHHHHHHHHH-hhhcCCccccccchhhhh
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQ-DLTEGKDTLIPMFDYQQK 137 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~-~l~~~~~i~~p~~d~~~~ 137 (899)
...+.+|.+.|.+||||||+|+.++...|+.+|+.|.+-. ...+..... .+.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~~~~~~~a~~~L~--------------- 418 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------TQNCLTACERALD--------------- 418 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------HHHHHHHHHHHHh---------------
Confidence 4567899999999999999999999988999999997521 111111111 111
Q ss_pred hcccccccccCCCcEEEEEccccchh---hhhc---C--CC-EEEEEEcCHHHHHHHHHHhcc
Q 002620 138 NRIGSKVIKGASSGVVIVDGTYALDA---RLRS---L--LD-IRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~---~--~D-~~I~Vda~~~~rl~R~i~RD~ 191 (899)
...-||+|..++-.. .+.. . +. ..+|+++|.+++..|...|..
T Consensus 419 -----------~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 419 -----------QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred -----------CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 223567788777642 1111 1 12 457889999999988888865
No 295
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.40 E-value=0.00032 Score=78.76 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=70.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHhC------CeEEecCccccccc-c--CCCCCCccHHHHHHHHH--------hhhcCCcc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVD-E--GNDLDSIDFDALVQNLQ--------DLTEGKDT 127 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~~-~--~~~p~s~d~~~l~~~L~--------~l~~~~~i 127 (899)
+.++|.+||||||+++.|+..|+ +.+++.|+++.... + .+.+..-.+..+++.|. .+..|...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~ 81 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSEL 81 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67999999999999999997774 46999999985321 1 11122222233333332 22223222
Q ss_pred ccc-----cch-----hhhh-hc-c---------ccccc--ccCCCcEEEEEccccchhh---hh---cCC---CEEEEE
Q 002620 128 LIP-----MFD-----YQQK-NR-I---------GSKVI--KGASSGVVIVDGTYALDAR---LR---SLL---DIRVAV 175 (899)
Q Consensus 128 ~~p-----~~d-----~~~~-~~-~---------~~~~~--~~~~~~vVIvEG~~l~~~~---l~---~~~---D~~I~V 175 (899)
..| ... .... .. + ..... ....+-++|+++.+..... +. ... -..||+
T Consensus 82 ~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~l 161 (340)
T TIGR03575 82 SAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFL 161 (340)
T ss_pred cCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence 222 000 0000 00 0 00000 0123348999999987631 11 111 167999
Q ss_pred EcCHHHHHHHHHHhc
Q 002620 176 VGGVHFSLISKVQYD 190 (899)
Q Consensus 176 da~~~~rl~R~i~RD 190 (899)
++|.++++.|-..|.
T Consensus 162 d~ple~~l~RN~~R~ 176 (340)
T TIGR03575 162 DCPVESCLLRNKQRP 176 (340)
T ss_pred eCCHHHHHHHHhcCC
Confidence 999999999988885
No 296
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=97.39 E-value=0.00087 Score=66.54 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=68.5
Q ss_pred ceEEEEeeCCEEEEEEeccccccCcccccceeEEehhhHHHHHHHcCceeeeeeeeeeEEeec-CcEEEEEecccCCCC-
Q 002620 750 DCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQD-GKILIEVDHLQDAPS- 827 (899)
Q Consensus 750 ~~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~~~l~~lg~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~- 827 (899)
..+|||..+++|+||+|++. .++|.++|.+|+.....-|++ +..+..|+|.|..|.. ++.++.+|.++|.+.
T Consensus 33 ~~vRvR~~~~~~~lT~K~~~----~~~R~E~E~~I~~~~~~~ll~--~~~~~~I~K~R~~~~~~~~~~~~vD~~~g~~~g 106 (146)
T cd07761 33 PEVRIRSKGEKYILTVKSGG----GLVREEIEIEIDKKEFEHLLE--KTEGNLIEKTRYLIPLEGGLLAELDVFEGRLTG 106 (146)
T ss_pred cEEEEEEECCEEEEEEEcCC----CcceEEEEEeCCHHHHHHHHH--hCCCCeEEEEEEEEEeCCCcEEEEEEEcCCCCC
Confidence 48999999999999999986 478899999997666655655 8888899999999999 999999999999764
Q ss_pred -ceEEEecccH
Q 002620 828 -PYLQIKGVDK 837 (899)
Q Consensus 828 -~~~~~~~~~~ 837 (899)
-|+||.-.+-
T Consensus 107 L~~~EvE~~se 117 (146)
T cd07761 107 LVYAEVEFPSE 117 (146)
T ss_pred eEEEEEEcCCc
Confidence 3677755543
No 297
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00035 Score=71.88 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=27.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC---CeEEecCc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMEN 95 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg---~~vI~~D~ 95 (899)
|.+|.++|.+||||||+|+.||+.|. ..+++...
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 46799999999999999999999883 44554443
No 298
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.37 E-value=0.001 Score=69.69 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.2
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHH
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLAS 84 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~ 84 (899)
.+.+.+|.|+|||||||||+++.|.+
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 45678899999999999999999976
No 299
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.35 E-value=0.00026 Score=76.34 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=25.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (899)
+|.++|++||||||+|+.|++.++ +.+++.|.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 367899999999999999999873 344555543
No 300
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.34 E-value=0.0011 Score=67.93 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
+++|.|++||||||+++.|+..++...++.|+++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~ 40 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA 40 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH
Confidence 688999999999999999999999888899988664
No 301
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0012 Score=71.73 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--CcccccccccchhhcccccCCCcccccHHHHHHHH
Q 002620 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNI 577 (899)
Q Consensus 503 ~i~~~~~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L 577 (899)
..+++..+....+++.+|||+|++|+||||+...|...| | +.||+.|-=-.- .-+++=-+.+ .+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~---------TGGsiLGDRi--RM 105 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF---------TGGSILGDRI--RM 105 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC---------CCccccccHh--hH
Confidence 345666677788999999999999999999999999887 2 567776622110 0011100000 01
Q ss_pred HHHhcCCceecccccccccccC---Cc--cce---e--eccCCcEEEEEeecccc--hhhhhcCCEEEEEEcCc
Q 002620 578 SDIRNGRRTKVPIFDLETGARS---GF--KEL---E--VSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGV 639 (899)
Q Consensus 578 ~~L~~g~~v~~P~yD~~~~~r~---~~--~~~---~--~~~~~dVVIvEG~~~~~--~~l~~~~D~~I~vd~~~ 639 (899)
+.+.....+ |=.+...|. +. ..+ . .....|+||+|-.-++. -.+.++.|..++|..|.
T Consensus 106 ~~~~~~~~v----FiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 106 QRLAVDPGV----FIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred HhhccCCCe----EEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 111111111 112211111 00 011 1 12457999999999987 45789999999998654
No 302
>PHA00729 NTP-binding motif containing protein
Probab=97.32 E-value=0.0015 Score=69.15 Aligned_cols=105 Identities=22% Similarity=0.120 Sum_probs=63.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC--cccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~--~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (899)
...-|.|+|++|+||||+|..|+..++. ..++.|+-..... ...--+|.+.+.+.|.....+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~------~~~~fid~~~Ll~~L~~a~~~~--------- 80 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYV------QNSYFFELPDALEKIQDAIDND--------- 80 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcC------CcEEEEEHHHHHHHHHHHHhcC---------
Confidence 4567889999999999999999998752 2233331111110 0112257777777766543321
Q ss_pred cccccCCccceeeccCCcEEEEEe---------ecc--------cchhhhhcCCEEEEEEcCchhhHHHHhhc
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEG---------VYA--------LHPEIRKSLDLWIAVVGGVHSHLISRVQR 649 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG---------~~~--------~~~~l~~~~D~~I~vd~~~d~rl~Rri~R 649 (899)
...+++|+|+ |+. +.+.++..++..++...+.+....+.-.|
T Consensus 81 --------------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 81 --------------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred --------------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 1135677777 441 33556777888888877776655554443
No 303
>COG0645 Predicted kinase [General function prediction only]
Probab=97.31 E-value=0.0015 Score=65.53 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=71.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccccccc-----CCCCCCccHHHHHHHHHhhhcCCccccccchhhhh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-----~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (899)
..+.+.|.+||||||+|+.|++.+|+..|.+|.+.+.+.. .+..+.+....-... |+....
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~v--------------y~~l~~ 67 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAV--------------YDELLG 67 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHH--------------HHHHHH
Confidence 4678999999999999999999999999999998775443 222233322211111 111000
Q ss_pred hcccccccccCCCcEEEEEccccch---hhhhcCCC------EEEEEEcCHHHHHHHHHHhcc
Q 002620 138 NRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD------IRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D------~~I~Vda~~~~rl~R~i~RD~ 191 (899)
+ ..........||+++.+.-. ......++ +.|.++++.++...|...|..
T Consensus 68 -~---A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 68 -R---AELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred -H---HHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 0 01112334578889988865 22222222 448889999999999999875
No 304
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.00092 Score=65.52 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=36.4
Q ss_pred eCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCc
Q 002620 523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF 565 (899)
Q Consensus 523 ~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p 565 (899)
.|.+||||||++..|++.||+..|..|+|+.+........+.|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiP 43 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIP 43 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCC
Confidence 4899999999999999999999999999999866554444444
No 305
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.28 E-value=0.0014 Score=67.47 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
..+|.|.|+.||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999999885
No 306
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.24 E-value=0.0011 Score=79.87 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=46.7
Q ss_pred eecCCCCcccchhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC------cccccccc
Q 002620 487 LVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC------EVVSLESY 551 (899)
Q Consensus 487 ~~~~~~~l~~~e~~~~~i~~~~~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l~~------~vislDdf 551 (899)
-...|++++.-|.... ..+....+.+.+.+|.++|.+||||||+|+.|+..++. .+++.|..
T Consensus 365 G~~pP~~f~rpeV~~i---L~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 365 GLEIPEWFSFPEVVAE---LRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CCCCChhhcHHHHHHH---HHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 3677888887776331 12223335567889999999999999999999999974 67777766
No 307
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.24 E-value=0.00029 Score=77.53 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=35.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-cccccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYF 552 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~-vislDdfy 552 (899)
.+.|++|.|+|++||||||+|..|+..+|.. +++.|.+-
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 3578999999999999999999999999876 88988776
No 308
>PLN02459 probable adenylate kinase
Probab=97.22 E-value=0.0012 Score=71.56 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=67.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~ 595 (899)
.++.|.|.||+||||||+|+.|++.+|...||+.+..+.+-... .+ +..+.-.-+.+|..+.--......
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t~------lg~~i~~~~~~G~lVPdeiv~~ll 97 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----GP------LGAQLKEIVNQGKLVPDEIIFSLL 97 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----ch------hHHHHHHHHHcCCccCHHHHHHHH
Confidence 44557778999999999999999999999999999987531110 00 001111112223221110000000
Q ss_pred cccCCccceeeccCCcEEEEEeecccchh---hhh--cCCEEEEEEcCchhhHHHHhhcC
Q 002620 596 GARSGFKELEVSEDCGVIIFEGVYALHPE---IRK--SLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 596 ~~r~~~~~~~~~~~~dVVIvEG~~~~~~~---l~~--~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
.++.. .. ......-+|++|.=--..+ +.. ..|..|+++.+.+..+.|...|.
T Consensus 98 ~~~l~--~~-~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 98 SKRLE--AG-EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred HHHHh--cc-cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 00000 00 0012356777776533211 212 36899999999998888887764
No 309
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00091 Score=67.73 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=31.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
|.+.|+.||||||+.+.||+.|+...+++|...-.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~ 39 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK 39 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH
Confidence 44679999999999999999999999999987653
No 310
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.22 E-value=0.0016 Score=66.91 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=64.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC----Ccccccccccchhhc--ccccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~----~~vislDdfy~~~~~--~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (899)
.+|.|.|||||||+|+++.|.+... ..+.++-..-++.+. .++.| .+ -.+.-..+..|.-+..-.|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~f-----vs---~~ef~~~i~~g~fve~~~~ 74 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHF-----VS---REEFEDDIKSGLFLEWGEY 74 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEE-----CC---HHHHHHHHHcCCeEEEEEE
Confidence 4677899999999999999988642 111111111111100 11111 11 1223334455665655554
Q ss_pred ccccc-ccCCccce-eeccCCcEEEEEeecccchhhhhc-CC-EEEEEEcCchhhHHHHhh
Q 002620 592 DLETG-ARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGVHSHLISRVQ 648 (899)
Q Consensus 592 D~~~~-~r~~~~~~-~~~~~~dVVIvEG~~~~~~~l~~~-~D-~~I~vd~~~d~rl~Rri~ 648 (899)
.-... ... ..+ .......++|+++-.-+...+... .+ ..||+.++....+.+|+.
T Consensus 75 ~g~~YGt~~--~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~ 133 (184)
T smart00072 75 SGNYYGTSK--ETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR 133 (184)
T ss_pred cCcCcccCH--HHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence 43211 111 111 112346788988876655555543 34 788998777776666665
No 311
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.22 E-value=0.00028 Score=78.43 Aligned_cols=39 Identities=36% Similarity=0.609 Sum_probs=35.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd--fy~~ 554 (899)
.+.+|.|+||+||||||+|..|++.+++.+||.|+ +|+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~ 43 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRG 43 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeec
Confidence 35689999999999999999999999999999999 5775
No 312
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.21 E-value=0.0019 Score=66.18 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=31.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy 552 (899)
..+.+.+|+|+|++||||||+++.|+..+. +.+++.|++-
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 346788999999999999999999998872 3456666554
No 313
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=97.21 E-value=0.00096 Score=69.54 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=87.8
Q ss_pred ccccccccccCCCCCCCCCcCCCc-eEEEEeeCCEEEEEEeccc-cccCcccccceeEEehhh-----------HHHHHH
Q 002620 727 AQNFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPL-REGNFIIQPKVDFDISIS-----------TVAGLL 793 (899)
Q Consensus 727 v~~y~d~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~-~d~~~~~~~~~~~~v~~~-----------~~~~l~ 793 (899)
.....+.||..| +..++..+ +||||+.++++.+|+|.+. .++....|++.|++|+.. +...+.
T Consensus 32 ~~~l~~~YfDTp----d~~L~~~~~aLRiR~~~~~~~~TlK~~~~~~~g~~~R~E~e~~l~~~~~~l~~~~~~~~~~~~~ 107 (197)
T cd07756 32 TRRLHNTYFDTP----DLALRRAGIALRVRREGGQWVQTLKTAGSVVGGLHQRPEWEVPLPGPAPDLDLASILPDGELLE 107 (197)
T ss_pred eeeeeeeeeeCc----ChHHHhCCCEEEEEeeCCeEEEEEeeCCcCCCCcccceeEcccCCCCCcCcchhhcCCcccCHh
Confidence 345678999999 77777766 9999999999999999886 445677899999999332 334566
Q ss_pred Hc----CceeeeeeeeeeEEeec----CcEEEEEec--ccCCC--CceEEE----ecccHHHHHHHHhhC
Q 002620 794 NL----GYQAVAYIEASAFIYQD----GKILIEVDH--LQDAP--SPYLQI----KGVDKEAVAAAGSTL 847 (899)
Q Consensus 794 ~l----g~~~~~~~~~~~~~~~~----~~~~~~~d~--~~~~~--~~~~~~----~~~~~~~~~~~~~~l 847 (899)
++ ++.++..+...|+.+.. ..|+|++|. |..-+ .+.-|| |.-+...+++++.+|
T Consensus 108 ~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l 177 (197)
T cd07756 108 ALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRL 177 (197)
T ss_pred hhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHH
Confidence 66 49999999999988877 349999998 44322 234443 666677888887765
No 314
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.19 E-value=0.00071 Score=67.26 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=26.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CC--ccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV---GC--EVVSLESYF 552 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~~--~vislDdfy 552 (899)
+|.|.|++||||||+|+.|+..+ +. .+++.|.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 46789999999999999999988 43 344555443
No 315
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0017 Score=65.51 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=31.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy 552 (899)
+..++.+|=++|.|||||||+|.+|.+.| | +.+++-|+.-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 44578999999999999999999999987 4 4455555543
No 316
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.17 E-value=0.0008 Score=70.06 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=31.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCcccccccccc
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK 553 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l---~~~vislDdfy~ 553 (899)
....|.+|.++|++||||||++..+...+ ++.+|+.|+|-.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34689999999999999999999999987 477899999844
No 317
>PRK13973 thymidylate kinase; Provisional
Probab=97.17 E-value=0.0015 Score=68.83 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=27.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh---CCeEEec
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L---g~~vI~~ 93 (899)
..|.|-|+.||||||.++.|++.| |..++.+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 679999999999999999999999 7777655
No 318
>PRK14526 adenylate kinase; Provisional
Probab=97.16 E-value=0.0014 Score=69.06 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
|.|.||+||||||+|+.|+..++...+|+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHH
Confidence 66899999999999999999999999999999875
No 319
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.14 E-value=0.00025 Score=72.78 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=57.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHH-HHHHHHHhcCCc----eecccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLL-SKNISDIRNGRR----TKVPIFDL 593 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL-~~~L~~L~~g~~----v~~P~yD~ 593 (899)
||.|++..|||++|+|+.||+.||..+++-+-+...........+....+|-... ...+..+..+.. ...+..+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 6899999999999999999999998886653222211111111112222332222 222333222110 01111111
Q ss_pred cccccCCccceeeccCCcEEEEEeecccchhhhhc-CCEEEEEEcCchhhHHHHhhcCccc
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LDLWIAVVGGVHSHLISRVQRDKSR 653 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~-~D~~I~vd~~~d~rl~Rri~RD~~~ 653 (899)
...... +.+......+-+|+.|+++.+ -+++. --+.||+.+|.+.|+.|.++|....
T Consensus 81 ~~~~~~--~~i~~la~~~~~Vi~GR~a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s 138 (179)
T PF13189_consen 81 IFRAQS--EIIRELAAKGNCVIVGRCANY-ILRDIPNVLHVFIYAPLEFRVERIMEREGIS 138 (179)
T ss_dssp HHHHHH--HHHHHHHH---EEEESTTHHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--
T ss_pred HHHHHH--HHHHHHhccCCEEEEecCHhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcCCC
Confidence 100000 001111113457788999865 12221 1389999999999999999886443
No 320
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0012 Score=65.95 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=31.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh-CCeEEecCcc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENY 96 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L-g~~vI~~D~~ 96 (899)
++++|.|+|.+|+||||+++.+.+.+ +..+++-.++
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~ 39 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDL 39 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHH
Confidence 47899999999999999999999888 7777877775
No 321
>PRK14529 adenylate kinase; Provisional
Probab=97.12 E-value=0.0017 Score=68.90 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=66.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccccC
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 599 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r~ 599 (899)
|.|.||+||||||.|+.|++.++...+|+.+..+.+-.. +.+ +..+.-.-+.+|..+.--.......++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~----~t~------lg~~i~~~i~~G~lvpdei~~~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG----GTE------LGKKAKEYIDRGDLVPDDITIPMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC----CCh------HHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 667999999999999999999999999998888742110 000 0011111122333221111111011111
Q ss_pred CccceeeccCCcEEEEEeecccchh---hh-------hcCCEEEEEEcCchhhHHHHhhcCc
Q 002620 600 GFKELEVSEDCGVIIFEGVYALHPE---IR-------KSLDLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 600 ~~~~~~~~~~~dVVIvEG~~~~~~~---l~-------~~~D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
.... ..-+|++|.=--... +. -..|..|+++.+.+..+.|...|-.
T Consensus 73 -----~~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 73 -----KQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred -----hccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 0011 345777776532211 11 2378999999999999988877743
No 322
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.12 E-value=0.0021 Score=66.92 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=31.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcc--ccccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~ 101 (899)
|.++.|.||+|+|||.+|-.||+.+|++||+.|.+ |.++.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~ 42 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS 42 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc
Confidence 57899999999999999999999999999999996 66554
No 323
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=97.10 E-value=0.00079 Score=68.53 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=73.3
Q ss_pred ccccccccCCCCCCCCCcCCCc-eEEEEeeCCEEEEEEeccccccCcccccceeEEehhhHH------------HHHHHc
Q 002620 729 NFIDMYLRLPGIPTNGQLTESD-CIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTV------------AGLLNL 795 (899)
Q Consensus 729 ~y~d~Y~~~~~l~~~~~~~~~~-~irir~~~~~~~l~~~~~~~d~~~~~~~~~~~~v~~~~~------------~~l~~l 795 (899)
.+.++||..| +..+.... +||.|..++++.+|+|.+..+ ..|++.|+.|..... ..+..+
T Consensus 33 ~~~~~YfDT~----d~~l~~~~lrlR~r~~~~~~~~TlK~~~~~---~~r~E~e~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (174)
T cd07374 33 QLRAIYFDTP----DLRLARAGLRLRRRTGGADAGWHLKLPGGI---SRRTEVRAPLGDAAAVAPLLLAAALVLAVTRGL 105 (174)
T ss_pred eeeeeEecCc----cchhhhCCcEEEEEcCCCccEEEEEccCCC---CCceEEEeecCCccCCcccccchhheeeecCCC
Confidence 5678999999 44333333 556656677999999998765 578999999843222 456779
Q ss_pred CceeeeeeeeeeEEeecC-----cEEEEEecccCC------CCceEEE
Q 002620 796 GYQAVAYIEASAFIYQDG-----KILIEVDHLQDA------PSPYLQI 832 (899)
Q Consensus 796 g~~~~~~~~~~~~~~~~~-----~~~~~~d~~~~~------~~~~~~~ 832 (899)
|++++..+...|+.|..+ .++|++|..+.. .-.++|+
T Consensus 106 ~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~e~E~ 153 (174)
T cd07374 106 PLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQYWREV 153 (174)
T ss_pred CceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceEEEEE
Confidence 999999999999988775 599999999883 3378888
No 324
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.09 E-value=0.00086 Score=68.45 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=31.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC--cccccccccch
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYFKS 554 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~--~vislDdfy~~ 554 (899)
.||.+.|+|.|||||+|+.|++.+.. ..+++|.|...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 37889999999999999999999963 57889999873
No 325
>PRK13975 thymidylate kinase; Provisional
Probab=97.08 E-value=0.0023 Score=66.01 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=24.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (899)
.+|.|.|+.||||||+++.|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999984
No 326
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.08 E-value=0.00034 Score=78.53 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=30.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC------Ccccccccccch
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYFKS 554 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~------~~vislDdfy~~ 554 (899)
+.++|++||||||+++.|+..+. +.++++|||+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 46799999999999999998774 459999999975
No 327
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.04 E-value=0.00046 Score=73.46 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=33.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC---cccccccccch
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKS 554 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~---~vislDdfy~~ 554 (899)
...+|.+.|+.|||||+||+.||+.||. +-+.||+.|.+
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvd 111 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVD 111 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeec
Confidence 4678889999999999999999999984 45678888876
No 328
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.0026 Score=62.33 Aligned_cols=42 Identities=33% Similarity=0.496 Sum_probs=34.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCcccccccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDE 102 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~ 102 (899)
+-.+|=|||-|||||||+|-+|.+.| | +.++|.|++..++..
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~ 76 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK 76 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc
Confidence 44679999999999999999998876 3 577899998777654
No 329
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0037 Score=63.85 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=65.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhc-----ccccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~-----~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (899)
..++.|+||||+||||+++.|-+..+ .-+|.-.-=++... .+|.| .+. .++.+.+..+.-+++..|
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~F-----vs~---~EF~~~i~~~~fLE~a~~ 74 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFF-----VTE---EEFEELIERDEFLEWAEY 74 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEe-----CCH---HHHHHHHhcCCcEEEEEE
Confidence 46778899999999999999988653 11111111111111 12333 112 223334445555555544
Q ss_pred cccccccCCccc--ee-eccCCcEEEEEeecccchhhhhcC-C-EEEEEEcCchhhHHHHhhcCccc
Q 002620 592 DLETGARSGFKE--LE-VSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVVGGVHSHLISRVQRDKSR 653 (899)
Q Consensus 592 D~~~~~r~~~~~--~~-~~~~~dVVIvEG~~~~~~~l~~~~-D-~~I~vd~~~d~rl~Rri~RD~~~ 653 (899)
.- ...+... .. ......-||+|==.-+...+++.+ | ..||+.+|.-..|.+|+.+...+
T Consensus 75 ~g---nyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtd 138 (191)
T COG0194 75 HG---NYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTD 138 (191)
T ss_pred cC---CcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCC
Confidence 33 2111111 11 111233444443333444455555 4 67899999999999998875433
No 330
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.97 E-value=0.0012 Score=65.37 Aligned_cols=112 Identities=22% Similarity=0.162 Sum_probs=62.0
Q ss_pred eeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCc
Q 002620 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 601 (899)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r~~~ 601 (899)
|.||+||||||+|+.|++.+|...||+.+..+..-... + ++..+.-..+.+|+.+.-...-.....+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~-------s---~~g~~i~~~l~~g~~vp~~~v~~ll~~~l-- 68 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSD-------S---ELGKQIQEYLDNGELVPDELVIELLKERL-- 68 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTT-------S---HHHHHHHHHHHTTSS--HHHHHHHHHHHH--
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhh-------h---HHHHHHHHHHHhhccchHHHHHHHHHHHH--
Confidence 57999999999999999999999999999887532110 1 11111122234454432222111111111
Q ss_pred cceeeccCCcEEEEEeecccch---hh-------hhcCCEEEEEEcCchhhHHHHhh
Q 002620 602 KELEVSEDCGVIIFEGVYALHP---EI-------RKSLDLWIAVVGGVHSHLISRVQ 648 (899)
Q Consensus 602 ~~~~~~~~~dVVIvEG~~~~~~---~l-------~~~~D~~I~vd~~~d~rl~Rri~ 648 (899)
.......-+|++|.=--.. .+ ....+..|+++++.+....|...
T Consensus 69 ---~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 69 ---EQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp ---HSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ---hhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 0012246688888765331 12 22357899999999877777554
No 331
>PLN02840 tRNA dimethylallyltransferase
Probab=96.96 E-value=0.00064 Score=78.09 Aligned_cols=40 Identities=30% Similarity=0.573 Sum_probs=35.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~ 554 (899)
....+|.|+||+||||||+|..|++.++..+|+.|++ |+.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~ 60 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRG 60 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecc
Confidence 4566899999999999999999999999999999985 544
No 332
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.95 E-value=0.002 Score=66.02 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=63.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC----cccccccccchhhc--ccccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGC----EVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~----~vislDdfy~~~~~--~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~y 591 (899)
.+|.|+||+||||||+++.|.+.++- .+-++-.--+..+. .++.| .+- .++.+.+..|.-+..-.|
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~f-----vs~---~~f~~~~~~~~fie~~~~ 74 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHF-----VSK---EEFERMIKAGEFIEYGEY 74 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE-------H---HHHHHHHHTTHEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEE-----Eee---chhhhhhccccEEEEeee
Confidence 34556999999999999999987751 11111111111000 11112 111 122233455666666666
Q ss_pred cccc-cccCCccce-eeccCCcEEEEEeecccchhhhhc--CCEEEEEEcCchhhHHHHhhc
Q 002620 592 DLET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS--LDLWIAVVGGVHSHLISRVQR 649 (899)
Q Consensus 592 D~~~-~~r~~~~~~-~~~~~~dVVIvEG~~~~~~~l~~~--~D~~I~vd~~~d~rl~Rri~R 649 (899)
+-.. |... ..+ .......++|++.-..+...++.. .-..||+..+....+.+++.+
T Consensus 75 ~g~~YGt~~--~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~ 134 (183)
T PF00625_consen 75 DGNYYGTSK--SAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRR 134 (183)
T ss_dssp TTEEEEEEH--HHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHT
T ss_pred cchhhhhcc--chhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhc
Confidence 4322 2111 111 122345667776554444445443 236889988888888888755
No 333
>PLN02165 adenylate isopentenyltransferase
Probab=96.94 E-value=0.00069 Score=75.57 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (899)
....+|+|.||+||||||||..|+..++..++++|..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3445889999999999999999999999999999987
No 334
>COG4639 Predicted kinase [General function prediction only]
Probab=96.92 E-value=0.002 Score=63.79 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=62.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcccccccc-CCCCCC-----ccHHHHHHHHHhhhcCCccccccchhh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-GNDLDS-----IDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-~~~p~s-----~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (899)
..+|.+.|.+||||||+|+.. .+.+.+|+.|++...+.. .+...+ .-++.+.+.+...
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qr-------------- 65 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQR-------------- 65 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHH--------------
Confidence 357999999999999999975 357899999998664421 111100 0111222222211
Q ss_pred hhhcccccccccCCCcEEEEEccccchh---------hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 002620 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYD 190 (899)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~---------~l~~~~D~~I~Vda~~~~rl~R~i~RD 190 (899)
....+.-|++...+-.. ....+.+..|++|.|...+..|-..|+
T Consensus 66 -----------l~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~ 118 (168)
T COG4639 66 -----------LRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE 118 (168)
T ss_pred -----------HHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence 12234667777665432 223455678999999999998865443
No 335
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0036 Score=61.48 Aligned_cols=101 Identities=20% Similarity=0.358 Sum_probs=67.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhccc-c--cCCCcccccHHHHHHHHHHHhc-CCceecccccccc
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKD-F--KYDDFSSLDLSLLSKNISDIRN-GRRTKVPIFDLET 595 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~-~--~~d~p~t~D~~lL~~~L~~L~~-g~~v~~P~yD~~~ 595 (899)
|.|+|-+|+||||+|.+||+.+|...|.+-|+.+..+.-. + .++.+ -+|-+.+.+.|..+.. |..|
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~-i~DEdkv~D~Le~~m~~Gg~I--------- 79 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCH-ILDEDKVLDELEPLMIEGGNI--------- 79 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCc-cccHHHHHHHHHHHHhcCCcE---------
Confidence 5579999999999999999999999999999888644221 1 12222 2577777887776433 3222
Q ss_pred cccCCccceeeccCCcEEEEEeecccchhhhhcCCEEEEEEcCchhhHHHHhhcC
Q 002620 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 596 ~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
|=.-| |-++|+ ..+|+.+.+.+|...-..|.-.|.
T Consensus 80 -----------------VDyHg-Cd~Fpe--rwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 80 -----------------VDYHG-CDFFPE--RWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred -----------------Eeecc-cCccch--hheeEEEEEecCchHHHHHHHHcC
Confidence 11111 112332 357888999999988888876654
No 336
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.87 E-value=0.0026 Score=75.52 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (899)
...|.+|.+.|++||||||+|+.++...|..+++.|.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 35788999999999999999999999889999999976
No 337
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.87 E-value=0.0034 Score=64.45 Aligned_cols=42 Identities=38% Similarity=0.660 Sum_probs=34.0
Q ss_pred cCCCC-EEEeeeCCCCccHHHHHHHHHHHh----CCcccccccccch
Q 002620 513 NKGLP-VIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYFKS 554 (899)
Q Consensus 513 ~~~~~-~iIgI~G~sGSGKTTla~~L~~~l----~~~vislDdfy~~ 554 (899)
..++| +.|++.||+|||||+|..++...| ...||.-|=|+..
T Consensus 8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~ 54 (202)
T COG0378 8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKE 54 (202)
T ss_pred HhcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechh
Confidence 34566 999999999999999998877666 5778888877754
No 338
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.82 E-value=0.0013 Score=73.85 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=33.9
Q ss_pred HHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 002620 510 LLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (899)
Q Consensus 510 l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (899)
+....+.+++|||+|++|||||||+..|...+. +.+++.|.-
T Consensus 49 ~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 49 LLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred HhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 333457899999999999999999999988762 567888764
No 339
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.80 E-value=0.0064 Score=67.10 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
...+|+|+|++||||||+++.|.. +|
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g 30 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LG 30 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cC
Confidence 346899999999999999999964 45
No 340
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.79 E-value=0.0048 Score=65.91 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=33.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCC---eEEecCcccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRV 98 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~ 98 (899)
...++|.+.|++|||||+||+.||+.||. +-+.+|++|.
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 45689999999999999999999999994 5567888654
No 341
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.78 E-value=0.0094 Score=63.63 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=40.3
Q ss_pred EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhhcHHhhhhcCCCcCcCcEEEECCCCC
Q 002620 171 IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVS 229 (899)
Q Consensus 171 ~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~~p~~~k~Iep~~~~ADiII~N~~~~ 229 (899)
-++|++|+.++-++|...-....-.+....+..-...++++..|-+..||.||+.+-++
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls 143 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELS 143 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCC
Confidence 35799999999888875422222222222233334567888899999999999998665
No 342
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.77 E-value=0.0013 Score=70.63 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccchhhcccccCCCcccccHHHHHHHHHH
Q 002620 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD 579 (899)
Q Consensus 505 ~~~~~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~ 579 (899)
..++.+....++..+|||+||+|+|||||...|...+ .+.|+..|-=-.-. -+++=-+.. .++.
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t---------GGAlLGDRi--RM~~ 85 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT---------GGALLGDRI--RMQE 85 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC------------SS--GG--GCHH
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC---------CCcccccHH--HhcC
Confidence 3455555667788999999999999999999999876 25566665221100 000000000 0000
Q ss_pred HhcCCceecccccccccccCC--------cccee--eccCCcEEEEEeecccch--hhhhcCCEEEEEEcCc
Q 002620 580 IRNGRRTKVPIFDLETGARSG--------FKELE--VSEDCGVIIFEGVYALHP--EIRKSLDLWIAVVGGV 639 (899)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~--------~~~~~--~~~~~dVVIvEG~~~~~~--~l~~~~D~~I~vd~~~ 639 (899)
+.....+ |=.+...|.. ...+. .....|+||+|-.-++.. ++.+..|..++|..|.
T Consensus 86 ~~~d~~v----fIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 86 LSRDPGV----FIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp HHTSTTE----EEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred cCCCCCE----EEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 1111111 1111111100 00000 123579999999999874 5789999999997764
No 343
>PLN02842 nucleotide kinase
Probab=96.76 E-value=0.002 Score=75.59 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=63.1
Q ss_pred eeCCCCccHHHHHHHHHHHhCCcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCc
Q 002620 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 601 (899)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~~~~~r~~~ 601 (899)
|.|++||||||+|+.|++.++..++++++..+.+... ++---..+.+. +.+|..+.-........++...
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~-------~T~iG~~Ire~---l~~G~lvPdeiv~~ll~drl~~ 71 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSA-------GTDIGKRAKEF---MNSGRLVPDEIVIAMVTGRLSR 71 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhcc-------CCHHHHHHHHH---HhCCCCCcHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999988753111 01000111111 1223221111111111111100
Q ss_pred cceeeccCCcEEEEEeecccc---hhhh---hcCCEEEEEEcCchhhHHHHhhcC
Q 002620 602 KELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 602 ~~~~~~~~~dVVIvEG~~~~~---~~l~---~~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
.. .. ..-+|++|.---. ..+. ...|+.|+++.+.++.+.|...|.
T Consensus 72 ~~---~~-~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 72 ED---AK-EKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred cc---cc-CCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 00 01 1235669842211 1122 246899999999999998877664
No 344
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.75 E-value=0.0048 Score=64.72 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=24.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHH
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANI 540 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~ 540 (899)
+.+.+.+|.|+|||||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567888999999999999999999764
No 345
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.75 E-value=0.00094 Score=66.94 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=26.9
Q ss_pred CCccHHHHHHHHHHHhCCcccccccccch
Q 002620 526 SGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 526 sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
+||||||+++.||..|+...+++|+++-.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~ 29 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE 29 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH
Confidence 69999999999999999999999998753
No 346
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.75 E-value=0.0025 Score=76.53 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=32.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
..|.+.|.+||||||+++.|++.||...+++|.+.-.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~ 43 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER 43 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence 3456789999999999999999999999999997543
No 347
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.71 E-value=0.0024 Score=71.65 Aligned_cols=116 Identities=16% Similarity=0.277 Sum_probs=63.9
Q ss_pred HHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccccccccCCCCCCccHHHHHHHHHhhhcCCcc
Q 002620 53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDT 127 (899)
Q Consensus 53 ~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~p~s~d~~~l~~~L~~l~~~~~i 127 (899)
+......+++.+|||+|++||||||++..|...+ | +.||+.|.-..- ..+ . -.-|..++.+ +.....+
T Consensus 47 ~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~-~~g-a-llgd~~r~~~----~~~~~~~ 119 (332)
T PRK09435 47 DALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR-TGG-S-ILGDKTRMER----LSRHPNA 119 (332)
T ss_pred HHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc-cch-h-hhchHhHHHh----hcCCCCe
Confidence 3333446778999999999999999999988766 3 677888863210 000 0 0002222111 1111110
Q ss_pred cccc---------chhhhhhcccccccccCCCcEEEEEccccch--hhhhcCCCEEEEEEc
Q 002620 128 LIPM---------FDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVG 177 (899)
Q Consensus 128 ~~p~---------~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda 177 (899)
.... ....+...+ ........+++|+|-....+ ..+...+|+++++..
T Consensus 120 ~~r~~~~~~~l~~~a~~~~~~~--~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~ 178 (332)
T PRK09435 120 FIRPSPSSGTLGGVARKTRETM--LLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQL 178 (332)
T ss_pred EEEecCCcccccchHHHHHHHH--HHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEec
Confidence 1100 011111111 12223456899999888876 356688999998864
No 348
>PRK07933 thymidylate kinase; Validated
Probab=96.66 E-value=0.0037 Score=65.97 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
+|+|-|+.||||||+++.|++.|.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999883
No 349
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.63 E-value=0.002 Score=61.29 Aligned_cols=31 Identities=39% Similarity=0.742 Sum_probs=27.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (899)
|.|.|++|+||||+++.+++.++..++..|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence 6799999999999999999999987765554
No 350
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.63 E-value=0.0012 Score=72.60 Aligned_cols=36 Identities=33% Similarity=0.623 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDd--fy~~ 554 (899)
+|.|+||+|||||++|..|++.++..+||.|+ +|+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG 38 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence 47899999999999999999999999999998 5775
No 351
>PLN02748 tRNA dimethylallyltransferase
Probab=96.62 E-value=0.0015 Score=76.36 Aligned_cols=40 Identities=33% Similarity=0.567 Sum_probs=36.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDd--fy~~ 554 (899)
+.+.+|.|+||+|||||+||..|+..+++.+|+.|. +|+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrg 61 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSG 61 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCC
Confidence 455689999999999999999999999999999996 6875
No 352
>COG4639 Predicted kinase [General function prediction only]
Probab=96.59 E-value=0.0025 Score=63.06 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=30.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
+.+|.+.|++||||||+|+..- ..+.++|+|++-..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~ 37 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLL 37 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHH
Confidence 4578899999999999999842 46889999999763
No 353
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.59 E-value=0.0015 Score=68.16 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=32.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccch
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKS 554 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy~~ 554 (899)
|.+|.+.||+|+||||.+.+||..+ .+.++++|.|--.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 7899999999999999999999887 2678899887654
No 354
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.56 E-value=0.0043 Score=67.89 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=53.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----CcccccccccchhhcccccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~~~~~~~~~~d~p~t~D~~lL~~~L~~L~~g~~v~~P~yD~ 593 (899)
+|.|+|.+||||||+|+.|++.+. +.+++-|++..... . |.++ .....+...+.....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~--~--y~~~--~~Ek~~R~~l~s~v~----------- 65 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRN--D--YADS--KKEKEARGSLKSAVE----------- 65 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTS--S--S--G--GGHHHHHHHHHHHHH-----------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchh--h--hhch--hhhHHHHHHHHHHHH-----------
Confidence 577999999999999999999863 45666555542211 1 2222 122222222222100
Q ss_pred cccccCCccceeeccCCcEEEEEeecccc---hh---hhhcC---CEEEEEEcCchhhHHHHhhcCc
Q 002620 594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PE---IRKSL---DLWIAVVGGVHSHLISRVQRDK 651 (899)
Q Consensus 594 ~~~~r~~~~~~~~~~~~dVVIvEG~~~~~---~~---l~~~~---D~~I~vd~~~d~rl~Rri~RD~ 651 (899)
.......+||+++.+-.. -+ +.... -..||++++.+.++.|-..|..
T Consensus 66 -----------r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 66 -----------RALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp -----------HHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred -----------HhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence 001224799999998542 11 22222 2689999999999999877763
No 355
>PLN02924 thymidylate kinase
Probab=96.53 E-value=0.015 Score=61.86 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
....+|+|.|+.||||||+++.|++.|.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999885
No 356
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0024 Score=64.81 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy 552 (899)
...+|+|.|++||||||+|+.|+..+. +.+++.|.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 456899999999999999999999873 4567888664
No 357
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.46 E-value=0.0037 Score=73.92 Aligned_cols=36 Identities=14% Similarity=0.404 Sum_probs=32.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.|+|+|++||||||+++.|++.+|+.++++|++...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence 478899999999999999999999999999988643
No 358
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0038 Score=64.48 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=24.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---Cccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG---CEVVSL 548 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~---~~visl 548 (899)
+|.++|++||||||+|+.|+..|. ..+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l 35 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL 35 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc
Confidence 567899999999999999999883 444444
No 359
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.42 E-value=0.0024 Score=60.79 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=27.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy 552 (899)
|.|.||+|+||||+++.+++.++..++.+|...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 457899999999999999999997776665443
No 360
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.40 E-value=0.018 Score=59.32 Aligned_cols=37 Identities=38% Similarity=0.707 Sum_probs=30.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh----CCeEEecCcccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV 98 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~~~ 98 (899)
++.|++.||+|||||||...+.+.| .+.||..|-+.+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~ 53 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeech
Confidence 5899999999999999988876655 578888887753
No 361
>PRK13973 thymidylate kinase; Provisional
Probab=96.33 E-value=0.0091 Score=62.95 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh---CCccccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSL 548 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l---~~~visl 548 (899)
..+|.|-|+.||||||.++.|++.| |..++.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3678899999999999999999998 5445443
No 362
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.32 E-value=0.0032 Score=63.15 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=23.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeEEecCccccc
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (899)
|+|+|+.|+||||+++.|++. |+.++ ..+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 899999999999999999997 98888 666553
No 363
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.31 E-value=0.0033 Score=65.51 Aligned_cols=37 Identities=38% Similarity=0.641 Sum_probs=32.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCcccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~ 98 (899)
|.+|++.||+|+||||.+.+||..+. +.+|++|.|.-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 67999999999999999999998762 67899998754
No 364
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.30 E-value=0.0026 Score=64.19 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.3
Q ss_pred eCCCCccHHHHHHHHHHHhCCcccccccccc
Q 002620 523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (899)
Q Consensus 523 ~G~sGSGKTTla~~L~~~l~~~vislDdfy~ 553 (899)
.|+|||||||+++.|+..+|...++.|.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~ 31 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 31 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCc
Confidence 4999999999999999999999999988764
No 365
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.21 E-value=0.0085 Score=58.49 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCe-EEecCcc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENY 96 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~-vI~~D~~ 96 (899)
+...+|++.|..||||||+++.+++.+|+. .+++--|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf 57 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTF 57 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCe
Confidence 445589999999999999999999999853 3444333
No 366
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.0038 Score=68.97 Aligned_cols=39 Identities=41% Similarity=0.730 Sum_probs=35.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~ 554 (899)
.+.+|.|.||+|||||-+|-.||..+|++|||+|+. |+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~ 42 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG 42 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence 367889999999999999999999999999999987 664
No 367
>PLN02772 guanylate kinase
Probab=96.18 E-value=0.028 Score=64.19 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (899)
...+|.|+||||||||||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999997754
No 368
>PRK13974 thymidylate kinase; Provisional
Probab=96.16 E-value=0.027 Score=59.30 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=23.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
.+|++-|+.||||||.++.|++.|.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998874
No 369
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.14 E-value=0.0049 Score=62.89 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
..+.+++|+|++|||||||++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4577999999999999999999998774
No 370
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.11 E-value=0.0089 Score=58.38 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=25.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (899)
....+|.+.|+.|||||||++.+++.+|+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 44568999999999999999999999984
No 371
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.09 E-value=0.0081 Score=67.82 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhc-CCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 45 YYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 45 y~~l~~~i~~~~~~-~~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
...++..+...... ..+..+++|+||+||||||+|+.|+..++
T Consensus 60 i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 60 IERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33344444443332 34568899999999999999999999875
No 372
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.08 E-value=0.0059 Score=62.31 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
..+.+|+|+|++|||||||++.|...|.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4567999999999999999999987763
No 373
>PRK13976 thymidylate kinase; Provisional
Probab=96.07 E-value=0.027 Score=59.28 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
.|+|-|.-||||||.++.|++.|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998874
No 374
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=96.05 E-value=0.033 Score=57.05 Aligned_cols=45 Identities=7% Similarity=-0.113 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCc--cCHHHHHHhhcHHhhhhc
Q 002620 168 LLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHI 212 (899)
Q Consensus 168 ~~D~~I~Vda~~~~rl~R~i~RD~~~r--~~~e~~~~~~~p~~~k~I 212 (899)
.-|+++|++++++++++|...|+.... .......++....|.+..
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~ 164 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELA 164 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999987222 233344444445555533
No 375
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.015 Score=61.76 Aligned_cols=39 Identities=38% Similarity=0.630 Sum_probs=33.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccc
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESY 551 (899)
Q Consensus 513 ~~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~-vislDdf 551 (899)
+...|.||.|.|+||.||||+|..||..||.. ++++|..
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 44679999999999999999999999999964 7787743
No 376
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.01 E-value=0.005 Score=61.74 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=20.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (899)
.|+|+||||||||||-+.++...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 58899999999999999999854
No 377
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.98 E-value=0.0085 Score=60.17 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHH
Q 002620 64 TVGIGGPSGSGKTSLAEKLASV 85 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~ 85 (899)
.|+|+||||||||||.+.+|..
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 4999999999999999999763
No 378
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.0079 Score=68.25 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=86.7
Q ss_pred ccccccceeccccCCCCcccccccCCceeEeeeCCEEEEEEcce-eecCCCccccceeEEEEeh--hHH-----------
Q 002620 256 NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQ-RIVDKNFIIRPKAEFEVGR--MTL----------- 321 (899)
Q Consensus 256 ~~~q~D~Y~~~~~rd~~~~dea~~~~~lRiR~~~~~~~ltyKg~-~~~~~~~~~k~r~E~ev~v--~~~----------- 321 (899)
.....++||+-|.+..+..+..+ |||+.++++.+|.|-- +..++. -.|.|+++.+ ...
T Consensus 33 ~~~L~n~YyDTpd~~L~~~~~gL-----RIR~~~~~y~~TlKtaG~v~gGl---H~RpEyn~~L~~~~~~~~~~p~~~~p 104 (432)
T COG3025 33 PQQLANIYYDTPDNWLRRHDMGL-----RIRREGGQYEQTLKTAGGVVGGL---HQRPEYNVPLPEDTLDLAELPRDRWP 104 (432)
T ss_pred hhhHhhhhcCCchHHHHhCCceE-----EEeccCCeEEEEEEecCcccccc---ccCccccccCCCCCcchhhChhhhcc
Confidence 45677999999999999999999 9999999999999944 333333 5899999998 111
Q ss_pred -HH---HHhcCCceeEEEEEEEEEEEe--C--CEEEEEeccC----CCCCCeEEEEec----CHHHHHHHHHHcCC
Q 002620 322 -GG---LLDLGYSVVASYKRASTYVVY--G--NLSVSFETID----TLDETFMVLRGT----NRKTVGAEALRMGI 381 (899)
Q Consensus 322 -~~---L~~LGf~~~~~v~K~R~~~~~--~--~~~v~lD~v~----~lG~~fvEiE~~----~~~~v~~~~~~Lgl 381 (899)
++ ....-..|+++.+=.|+.|.. | .++|+||... +.-.|+-|||.. +...+.++++.|-.
T Consensus 105 ~~~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age~q~picElElELKsG~~~aL~~la~~L~~ 180 (432)
T COG3025 105 AGIFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGERQEPICELELELKSGTPQALLALARTLAE 180 (432)
T ss_pred cccCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCcccCchhheehhhhcCCHHHHHHHHHHHHH
Confidence 11 123345788999999999965 3 5688999884 555667777765 55666666666543
No 379
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.96 E-value=0.011 Score=66.88 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
....++++.||+||||||+|+.|+..++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568899999999999999999999885
No 380
>PLN02199 shikimate kinase
Probab=95.96 E-value=0.0083 Score=65.91 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=33.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.-|.+.|.+||||||+++.|++.+|+.++++|.+...
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~ 139 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQ 139 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHH
Confidence 3567799999999999999999999999999988764
No 381
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.93 E-value=0.0057 Score=67.69 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=32.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf--y~~ 554 (899)
+.+|.|+||+|||||.||-.||.. +..+||.|+. |+.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ 42 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKE 42 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCC
Confidence 347899999999999999999999 5699999987 665
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.88 E-value=0.0072 Score=69.93 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=32.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy 552 (899)
+.|.+|+++|++||||||++..||..+ | +.++++|.|-
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 458999999999999999999999877 3 5678888665
No 383
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.88 E-value=0.013 Score=56.44 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCC
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (899)
+...+|.+.|.-|||||||++.+++.+|+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45578999999999999999999999985
No 384
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.0082 Score=59.89 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
.+..|+|||++||||||++..+++.|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 356799999999999999999998774
No 385
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.86 E-value=0.0069 Score=70.28 Aligned_cols=39 Identities=38% Similarity=0.500 Sum_probs=34.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFK 553 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~~-vislDdfy~ 553 (899)
..|.+|.+.|++||||||+|..|+..+|.. +++.|.+-.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 469999999999999999999999999976 789987644
No 386
>PHA03132 thymidine kinase; Provisional
Probab=95.85 E-value=0.067 Score=64.03 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=26.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (899)
.++|.|-|+.||||||+++.|++.+|..++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi 286 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVL 286 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence 578999999999999999999998854444
No 387
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.83 E-value=0.026 Score=61.58 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=34.2
Q ss_pred EEEEEEcCchhhHHHHhhcCccccccccchh-hHHhhccchhhhhcccccCcccEEEcCCC
Q 002620 631 LWIAVVGGVHSHLISRVQRDKSRMGCFMSQN-DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 631 ~~I~vd~~~d~rl~Rri~RD~~~rg~~~~~~-q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
..+|++++.++-+.|.-.-. |...+... ..... ...+.+.++|-+..||++||.+.
T Consensus 84 ~ilFLdA~d~~LirRy~eTR---R~HPL~~~~~~le~-I~~Er~~L~~lr~~Ad~vIDTs~ 140 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETR---RRHPLSSDGSLLEA-IEKERELLEPLRERADLVIDTSN 140 (284)
T ss_pred EEEEEECChHHHHHHHHhcc---CCCCCCCCCCcHHH-HHHHHHHHHHHHHhCCEEEECCC
Confidence 46799999888777754311 22222211 11122 34566777888999999999764
No 388
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.78 E-value=0.0062 Score=61.09 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 520 IgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
|+|+|+.|||||||++.|++. |+.++ +.+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 789999999999999999998 87766 555554
No 389
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.11 Score=54.81 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=36.5
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccC-CccCHH--HHHHhhcHHhhhhcCCCcCcCcEEEECC
Q 002620 168 LLDIRVAVVGGVHFSLISKVQYDIG-DSCSLD--SLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 168 ~~D~~I~Vda~~~~rl~R~i~RD~~-~r~~~e--~~~~~~~p~~~k~Iep~~~~ADiII~N~ 226 (899)
.-|+++|+|+++++.++|...|... ++...+ .+.+.....|.+....... .=++|+++
T Consensus 127 ~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~ 187 (208)
T COG0125 127 KPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPE-RIIVIDAS 187 (208)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECC
Confidence 4599999999999999999998665 442222 2455555555554322222 12456666
No 390
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.77 E-value=0.011 Score=65.14 Aligned_cols=37 Identities=38% Similarity=0.617 Sum_probs=30.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh----C---CeEEecCccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYR 97 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L----g---~~vI~~D~~~ 97 (899)
++.+|+|.||+||||||++..|+..+ | +.+|++|.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 46799999999999999999998755 3 5678998764
No 391
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.76 E-value=0.0096 Score=55.99 Aligned_cols=26 Identities=50% Similarity=0.663 Sum_probs=23.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCC
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGC 88 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (899)
..+.|.|++||||||+++.|+..++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999987753
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.74 E-value=0.0084 Score=66.05 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=31.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C---Ccccccccccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFK 553 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l----~---~~vislDdfy~ 553 (899)
.+.+|++.||+||||||++..|+..+ | +.++++|.|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 46799999999999999999998765 2 45888887653
No 393
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.73 E-value=0.012 Score=65.39 Aligned_cols=42 Identities=31% Similarity=0.522 Sum_probs=33.9
Q ss_pred HhcCCCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccc
Q 002620 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (899)
Q Consensus 56 ~~~~~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (899)
......+.+|+|+|++||||||++..|+..+ | +.+|+.|...
T Consensus 28 ~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 28 MPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3445678999999999999999999998765 3 5678888643
No 394
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.68 E-value=0.012 Score=64.49 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=31.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (899)
+++.+|+++|++|+||||++..||..+ | +.++++|-|.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 457899999999999999999999866 3 5678998753
No 395
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.68 E-value=0.012 Score=55.35 Aligned_cols=33 Identities=36% Similarity=0.294 Sum_probs=25.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCcc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (899)
..+++|.|+|||||||+++.+. -|...+..|++
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 3579999999999999999986 34444555654
No 396
>PRK06761 hypothetical protein; Provisional
Probab=95.66 E-value=0.016 Score=63.74 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=27.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (899)
.+|.|+|++||||||+++.|++.+...-++.+.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 4788999999999999999999987544444443
No 397
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.66 E-value=0.011 Score=60.37 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeE
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTL 90 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~v 90 (899)
+|.|+|++||||||+|..|+..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~ 29 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQV 29 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCc
Confidence 689999999999999999998877433
No 398
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.64 E-value=0.011 Score=68.26 Aligned_cols=33 Identities=36% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEe
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (899)
..+..|+|+|++|||||||++.|++.+|+..+.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 445689999999999999999999998876543
No 399
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.61 E-value=0.01 Score=61.94 Aligned_cols=36 Identities=33% Similarity=0.675 Sum_probs=27.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC----Cccccccccc
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYF 552 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~----~~vislDdfy 552 (899)
|+.|+|+|++||||||+.+.+...+. +.++..|-++
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 67899999999999999999988763 3444544443
No 400
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.61 E-value=0.008 Score=58.91 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998654
No 401
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.60 E-value=0.015 Score=55.98 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (899)
+..-+|.+.|+-|||||||++.++..+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 55678999999999999999999999973
No 402
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.033 Score=61.18 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=29.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCccccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (899)
.++|.+.||+|.||||+|++||++|.+. ..|.|+++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~~ 212 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYKG 212 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee--ecCccccc
Confidence 3579999999999999999999988655 44556553
No 403
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.59 E-value=0.011 Score=65.80 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=34.8
Q ss_pred HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCccccccccc
Q 002620 509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (899)
Q Consensus 509 ~l~~~~~~~~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDdfy 552 (899)
.+....+.+.+|+|+|++|||||||+..|+..+ .+.+++.|..+
T Consensus 26 ~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 26 RIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred hCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 333345678999999999999999999999876 25678888654
No 404
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.59 E-value=0.0089 Score=56.22 Aligned_cols=26 Identities=46% Similarity=0.673 Sum_probs=22.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (899)
..+.|.||+||||||+++.|+..++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46788999999999999999998753
No 405
>PRK06761 hypothetical protein; Provisional
Probab=95.58 E-value=0.02 Score=62.93 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=27.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (899)
.+|.|+|++||||||+++.|++.++..-++.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 579999999999999999999988754444443
No 406
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.57 E-value=0.0089 Score=61.19 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (899)
++|.|.|+.||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999988
No 407
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.55 E-value=0.0092 Score=62.31 Aligned_cols=22 Identities=50% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHH
Q 002620 63 VTVGIGGPSGSGKTSLAEKLAS 84 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~ 84 (899)
-+|.|.|||||||||+.+.|..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4799999999999999999954
No 408
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.54 E-value=0.0093 Score=63.32 Aligned_cols=32 Identities=47% Similarity=0.639 Sum_probs=24.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh----CCeEEecC
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISME 94 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D 94 (899)
-++||.|+|||||||+++.|+... |...++..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~ 69 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK 69 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc
Confidence 479999999999999999998643 34445543
No 409
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.024 Score=54.80 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=67.6
Q ss_pred eeEeeeCCEEEEEEcceeecCCCccccceeEEEEehhHHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCC--CCC
Q 002620 283 IKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL--DET 360 (899)
Q Consensus 283 lRiR~~~~~~~ltyKg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGf~~~~~v~K~R~~~~~~~~~v~lD~v~~l--G~~ 360 (899)
+|||..|.+.+||.||+. .+ -+|.|||-.+-+....+-|-+-+...++|+|-....+|.+-.+|...|- |=.
T Consensus 39 VRVRi~g~~A~LTiK~~~---~~---~~R~EfEY~iPl~DA~e~l~~~~g~~IEK~R~~v~~~G~~wEVDvF~G~n~gLv 112 (156)
T COG2954 39 VRVRIVGDRAYLTIKGGA---SG---LSRSEFEYEIPLADAEEMLTTACGRVIEKTRYPVRHGGFLWEVDVFLGDNAGLV 112 (156)
T ss_pred EEEEEecceEEEEEEccc---cc---eeeeeeeecccccCHHHHHHHhcchheeeeEeeeeeCCEEEEEeeecCcccceE
Confidence 499999999999999754 24 5899999999333333333444555899999999999999999999643 333
Q ss_pred eEEEEecCHHHHHHHHHHcCC
Q 002620 361 FMVLRGTNRKTVGAEALRMGI 381 (899)
Q Consensus 361 fvEiE~~~~~~v~~~~~~Lgl 381 (899)
-.|+|-.++.+-..+-..||-
T Consensus 113 vAEvEl~~e~~~~~lP~WLGr 133 (156)
T COG2954 113 VAEVELPDENADFDLPDWLGR 133 (156)
T ss_pred EEEEEcCccccCCcCccccCc
Confidence 468887666555555555663
No 410
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.0086 Score=63.54 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=21.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (899)
-++||.|+|||||||+++.|+-..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 478999999999999999998754
No 411
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.51 E-value=0.0085 Score=58.73 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 367899999999999999998764
No 412
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.50 E-value=0.012 Score=62.19 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhCCeE-EecCc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIGCTL-ISMEN 95 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg~~v-I~~D~ 95 (899)
+|||+|.+||||||+|+.+.+ .|.++ +++.+
T Consensus 2 iI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d 33 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE-NYNAVKYQLAD 33 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhH
Confidence 799999999999999999976 56666 77765
No 413
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.49 E-value=0.016 Score=67.15 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=32.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (899)
.++.+|+++|++||||||++..||..+ | +.++++|.|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 457899999999999999999999766 4 6778998764
No 414
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.49 E-value=0.0092 Score=62.35 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=19.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHH
Q 002620 518 VIVGIGGPSGSGKTSLAHKMAN 539 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~ 539 (899)
-+|.|.||||||||||.+.|-.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4677899999999999999865
No 415
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.48 E-value=0.0095 Score=64.00 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=23.6
Q ss_pred EECCCCCcHHHHHHHHHHHhC-----CeEEecCcc
Q 002620 67 IGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (899)
Q Consensus 67 ItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~ 96 (899)
|+||+||||||+++.+++.+. +.+|+.|.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 689999999999999999774 578888873
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.47 E-value=0.015 Score=65.10 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (899)
+++.+|++.||+||||||++..||..+ | +.++++|-+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 357899999999999999999999876 3 5667777653
No 417
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.083 Score=52.88 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=71.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCe-EEecCcc-ccccccCCCC-----CCccHHHHHHHHHhhhcCCccccccchhh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENY-RVGVDEGNDL-----DSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~-vI~~D~~-~~~~~~~~~p-----~s~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (899)
..|.+.|||||||-|+.......+... -+ .| .+-.....++ ++.+...+.+.- ..|. =.++|+
T Consensus 6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~---~fvrRvITRpa~ag~EdH~avs~~eF~~~a---~~g~----FAlsWq 75 (192)
T COG3709 6 RLIAVVGPSGAGKDTLLDAARARLAGRPRL---HFVRRVITRPADAGGEDHDALSEAEFNTRA---GQGA----FALSWQ 75 (192)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhccCCce---EEEEEEecccCCCCcccccccCHHHHHHHh---hcCc----eeEEeh
Confidence 579999999999999999998877321 01 01 1112222222 333333222210 1110 011222
Q ss_pred hhhcc----cccccccCCCcEEEEEccccchhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCccCHHHHHHhh
Q 002620 136 QKNRI----GSKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI 204 (899)
Q Consensus 136 ~~~~~----~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vda~~~~rl~R~i~RD~~~r~~~e~~~~~~ 204 (899)
.+... ...-.......+||+-|.-+.-+..+..+ + .++.|.+++++-.+|...|-. .+.+++.++.
T Consensus 76 AhGL~Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGR---Es~eeI~aRL 147 (192)
T COG3709 76 AHGLSYGIPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGR---ESREEILARL 147 (192)
T ss_pred hcCccccCchhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhcc---CCHHHHHHHH
Confidence 11110 01111234567999999988887666444 3 568899999999888888753 3455555543
No 418
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.45 E-value=0.012 Score=66.04 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=30.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (899)
+.+.+|++.||+||||||++..|+..+. +.++..|-|
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4578999999999999999999998772 456666654
No 419
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.43 E-value=0.012 Score=64.42 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=32.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy~ 553 (899)
+.+.+|++.|++|+||||++..|+..+ | +.++++|-|..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 457899999999999999999999876 2 56788887543
No 420
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.42 E-value=0.014 Score=59.19 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=28.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccc
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (899)
+++++|++||||||++..|+..+ | +.++++|.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 78999999999999999998865 4 5678888753
No 421
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.42 E-value=0.011 Score=62.66 Aligned_cols=24 Identities=46% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (899)
-.|+|.||||||||||.+.++...
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 369999999999999999997633
No 422
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.41 E-value=0.01 Score=62.89 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (899)
-+|+|.||||||||||-+.|....
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999998754
No 423
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.40 E-value=0.039 Score=67.70 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~ 553 (899)
...|.+|.++|.+||||||+|+.|++.|+ +.+++.|++..
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 34689999999999999999999999873 46788888765
No 424
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.40 E-value=0.015 Score=49.03 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (899)
+..|+|++||||||+..++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999998765
No 425
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.39 E-value=0.029 Score=59.47 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=39.7
Q ss_pred Cccccccc----cHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHh-----CCeEEecCcc
Q 002620 36 PVHASFDH----GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENY 96 (899)
Q Consensus 36 ~~~is~d~----~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~L-----g~~vI~~D~~ 96 (899)
+...+||+ ....++..+............+.|.|++|+|||++|+.++... .+.++++..+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 33455555 2233445555544433344568899999999999999998865 4566776654
No 426
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.39 E-value=0.013 Score=60.57 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=23.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
..+|.|.|+.||||||+++.|++.++
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999873
No 427
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.36 E-value=0.008 Score=64.59 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=21.5
Q ss_pred eeCCCCccHHHHHHHHHHHhC-----Ccccccc
Q 002620 522 IGGPSGSGKTSLAHKMANIVG-----CEVVSLE 549 (899)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~-----~~vislD 549 (899)
|.||.||||||+|+.+++.+. +.+|.+|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 579999999999999999874 4466666
No 428
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.019 Score=65.47 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=31.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (899)
.++.+|++.|+.||||||++..||..+ | +.++++|.+.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 345789999999999999999999766 2 5678888763
No 429
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.34 E-value=0.018 Score=48.57 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (899)
+..|+|++||||||+..++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999997654
No 430
>PRK14974 cell division protein FtsY; Provisional
Probab=95.31 E-value=0.017 Score=65.08 Aligned_cols=37 Identities=30% Similarity=0.480 Sum_probs=29.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCcc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~ 96 (899)
.++.+|+++|++||||||++..|+..+ | +.++++|-|
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 457899999999999999888888765 3 445777755
No 431
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.015 Score=58.07 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.++-|+|+|++||||||++.++++.|.-.-+..-.||-+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 467899999999999999999999885333444455543
No 432
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.015 Score=66.40 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy 552 (899)
+.|.+|++.||.||||||++..|+..+. +.++++|.|-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3568999999999999999999998762 5577888663
No 433
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.26 E-value=0.022 Score=59.48 Aligned_cols=35 Identities=37% Similarity=0.692 Sum_probs=27.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC----CeEEecCcc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY 96 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg----~~vI~~D~~ 96 (899)
|+.|+|+|+.||||||+.+.+...+. +.++..|.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~ 39 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIY 39 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcC
Confidence 56899999999999999999987653 445555543
No 434
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.24 E-value=0.016 Score=65.39 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=32.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislD 549 (899)
-+.|.++||-||+|+|||.+|++++..+|+..|.++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 468999999999999999999999999998766654
No 435
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.23 E-value=0.016 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVGCE 544 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~~~ 544 (899)
+|.|+||+||||||+|..|+..++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC
Confidence 68899999999999999999887643
No 436
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.23 E-value=0.013 Score=54.99 Aligned_cols=22 Identities=50% Similarity=0.505 Sum_probs=20.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHH
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMA 538 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~ 538 (899)
--+++|.||||||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999987
No 437
>PRK14974 cell division protein FtsY; Provisional
Probab=95.23 E-value=0.015 Score=65.49 Aligned_cols=38 Identities=32% Similarity=0.580 Sum_probs=29.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdf 551 (899)
.++|.+|+++|++||||||++..|+..+ | +.++..|-|
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3468999999999999999999998766 2 445666644
No 438
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.18 E-value=0.043 Score=58.07 Aligned_cols=51 Identities=29% Similarity=0.420 Sum_probs=33.9
Q ss_pred cccc--cHHHHHHHHHHHHh----cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeE
Q 002620 40 SFDH--GYYLLVKSIQELRE----KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTL 90 (899)
Q Consensus 40 s~d~--~y~~l~~~i~~~~~----~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~v 90 (899)
+|++ +-..+...+....+ +.....-+.+.||+|+||||+|+.+|..+|+.+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 5666 55666665544332 234456799999999999999999999998655
No 439
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.17 E-value=0.019 Score=57.82 Aligned_cols=25 Identities=48% Similarity=0.701 Sum_probs=23.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (899)
|.+|+|+|++||||||++..|...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 440
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.15 E-value=0.035 Score=66.11 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=30.0
Q ss_pred cCCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEe
Q 002620 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (899)
Q Consensus 58 ~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~ 92 (899)
......+..++||+||||||+.+.||+.+|..|+.
T Consensus 41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 34445699999999999999999999999987764
No 441
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.15 E-value=0.018 Score=60.19 Aligned_cols=34 Identities=41% Similarity=0.613 Sum_probs=28.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdf 551 (899)
.++.|.||+|+|||.+|-.||+.+|+++|+.|..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 4678999999999999999999999999999987
No 442
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.14 E-value=0.021 Score=55.43 Aligned_cols=26 Identities=46% Similarity=0.787 Sum_probs=23.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHhCCeE
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIGCTL 90 (899)
Q Consensus 65 IgItG~sGSGKSTlA~~La~~Lg~~v 90 (899)
|.|.|++|+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 67999999999999999999998554
No 443
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=95.13 E-value=0.083 Score=56.15 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCccccccccC------CCCCCccHHHHHHHHHhhhcCCcc
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEG------NDLDSIDFDALVQNLQDLTEGKDT 127 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~------~~p~s~d~~~l~~~L~~l~~~~~i 127 (899)
..++.+|.+.|-+|.|||++|+.|+..|. +.+.+..+|.+..... .+|...+-..+++.+....-..-+
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~ 88 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLI 88 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHH
Q ss_pred ccccchhhhhhcccccccccCCCcEEEEEccccch-------hhhhcCCCEEEEEEc---CHHHHHHHHHHhccC----C
Q 002620 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-------ARLRSLLDIRVAVVG---GVHFSLISKVQYDIG----D 193 (899)
Q Consensus 128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-------~~l~~~~D~~I~Vda---~~~~rl~R~i~RD~~----~ 193 (899)
. ........|.|+||...-. ..+.+.---++||++ +++........-... .
T Consensus 89 ~---------------~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~ 153 (222)
T PF01591_consen 89 E---------------WLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYK 153 (222)
T ss_dssp H---------------HHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGT
T ss_pred H---------------HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccc
Q ss_pred ccCHHHHHHhh---cHHhhhhcCC
Q 002620 194 SCSLDSLIDSI---FPLFRKHIEP 214 (899)
Q Consensus 194 r~~~e~~~~~~---~p~~~k~Iep 214 (899)
..+.+++++.. ...|++..+|
T Consensus 154 ~~~~e~A~~Df~~RI~~Ye~~YEp 177 (222)
T PF01591_consen 154 GMDPEEAIEDFKKRIEHYEKVYEP 177 (222)
T ss_dssp TS-HHHHHHHHHHHHHHHHTT---
T ss_pred cCCHHHHHHHHHHHHHhhcccccc
No 444
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.13 E-value=0.018 Score=56.75 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (899)
.+|+|+|+++||||||++.|...|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998866
No 445
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.11 E-value=0.024 Score=66.13 Aligned_cols=31 Identities=35% Similarity=0.599 Sum_probs=28.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (899)
+..+..|+||+||||||+.+.|++.+|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4568999999999999999999999998776
No 446
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.06 E-value=0.049 Score=51.77 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L 86 (899)
....+.|.|++|+||||+++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999877
No 447
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.02 E-value=0.029 Score=53.32 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=21.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l 541 (899)
...+.|.|++|+||||+++.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999987
No 448
>PRK10867 signal recognition particle protein; Provisional
Probab=95.01 E-value=0.021 Score=66.48 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Cccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF 552 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l----~--~~vislDdfy 552 (899)
+.|.+|.++|++||||||++..||..+ | +.++++|.|-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 458999999999999999999988765 2 5678888753
No 449
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.00 E-value=0.019 Score=58.06 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=28.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy 552 (899)
++++.|++||||||++..++..+ | +.++++|.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68899999999999999999876 3 5577888653
No 450
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.95 E-value=0.022 Score=56.75 Aligned_cols=29 Identities=41% Similarity=0.551 Sum_probs=26.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeE
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTL 90 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~v 90 (899)
+++|+|.||-.||||||+++||+.+|.+.
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~~ 36 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTTS 36 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCCc
Confidence 57899999999999999999999987643
No 451
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.023 Score=65.53 Aligned_cols=37 Identities=43% Similarity=0.593 Sum_probs=30.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHh----C--CeEEecCccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYR 97 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~L----g--~~vI~~D~~~ 97 (899)
++.+|+++|++||||||++..||..+ | +.++++|.+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 45789999999999999999999754 3 5678888754
No 452
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.94 E-value=0.019 Score=61.37 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L 86 (899)
+|+|.|||||||||+-+.+|...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998754
No 453
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.94 E-value=0.02 Score=66.05 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=27.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~l~~~v 545 (899)
..-...|+|.|++|||||||++.|+..+|...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 34567899999999999999999999988553
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.94 E-value=0.019 Score=59.76 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
+|.|+||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999887663
No 455
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.93 E-value=0.026 Score=64.93 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (899)
|.-|.+.||+|+||||+|+.||+.+++++++.|.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 4568999999999999999999999999999885
No 456
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.90 E-value=0.023 Score=66.12 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=30.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Ccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY 551 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l----~--~~vislDdf 551 (899)
+.|.+|.++|++||||||+|..||..+ | +.++++|.|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 458999999999999999999998764 2 567888864
No 457
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.89 E-value=0.076 Score=56.61 Aligned_cols=98 Identities=21% Similarity=0.341 Sum_probs=52.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHh----CCeEEecCcccc-ccccCCCCCCcc-----------------HHHHHHHHHhh
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV-GVDEGNDLDSID-----------------FDALVQNLQDL 121 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~~~-~~~~~~~p~s~d-----------------~~~l~~~L~~l 121 (899)
.|||.|..|||||||.+.|+..+ |-..++.+-... .+..+-.|+.-. .+...+.+.+.
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieF 134 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEF 134 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 59999999999999999998766 233344433211 111111221111 11111112222
Q ss_pred hc-CCccccc--cchhhhhhcccccccccCCCcEEEEEccccc
Q 002620 122 TE-GKDTLIP--MFDYQQKNRIGSKVIKGASSGVVIVDGTYAL 161 (899)
Q Consensus 122 ~~-~~~i~~p--~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~ 161 (899)
.. |.-+..| .|+.....|........-.++++|+|=.++.
T Consensus 135 aELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 135 AELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 22 1113333 4676677776555555556678888866664
No 458
>PF13173 AAA_14: AAA domain
Probab=94.89 E-value=0.032 Score=53.75 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhC----CeEEecCcc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY 96 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg----~~vI~~D~~ 96 (899)
.++.|.|+-||||||+++.+++.+. +..++.|+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 5799999999999999999998664 667777774
No 459
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.88 E-value=0.053 Score=58.35 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCccc
Q 002620 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYR 97 (899)
Q Consensus 59 ~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~ 97 (899)
..+|.+|.+.|..||||||+++.|-..+. ..+|+.|.-.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv 59 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAV 59 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHH
Confidence 46788999999999999999999987663 4688999743
No 460
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.88 E-value=0.021 Score=56.34 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 002620 519 IVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~~~l 541 (899)
+|+|.|+++||||||++.|.+.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999877
No 461
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.87 E-value=0.024 Score=57.74 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=57.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh----CCeEEecCcc------ccccc----c---------------CCCC----CC
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENY------RVGVD----E---------------GNDL----DS 108 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L----g~~vI~~D~~------~~~~~----~---------------~~~p----~s 108 (899)
--+++|.|+|||||||+.+.+|.-. |...|+..+. -|++. + +-.| .+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a 104 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNA 104 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCH
Confidence 3479999999999999999998733 4555665553 11110 0 0112 33
Q ss_pred ccHHHHHHHHHhhhc-CCcccc-ccchhhhhhcccccccccCCCcEEEEEccccch
Q 002620 109 IDFDALVQNLQDLTE-GKDTLI-PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 162 (899)
Q Consensus 109 ~d~~~l~~~L~~l~~-~~~i~~-p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~ 162 (899)
.+.+++...+...-- +..-.. +..+...+.|+.....-..+.+++++|-++.--
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsAL 160 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL 160 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhc
Confidence 344444333322110 101111 235566666765555556677899999888743
No 462
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.86 E-value=0.024 Score=65.16 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (899)
+..|.+.||+||||||+|+.|++.++++++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4679999999999999999999999998888876
No 463
>PRK10867 signal recognition particle protein; Provisional
Probab=94.85 E-value=0.034 Score=64.79 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh----C--CeEEecCcccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV 98 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~ 98 (899)
++|.+|.++|++||||||++..||..+ | +.+|++|.|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 457899999999999999888888754 4 56799998643
No 464
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.023 Score=65.30 Aligned_cols=39 Identities=28% Similarity=0.476 Sum_probs=32.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC---------Ccccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFK 553 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~---------~~vislDdfy~ 553 (899)
.+|.+|.+.||+|+||||++..|+..+. +.++++|.|--
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 4578999999999999999999998652 56888887743
No 465
>COG0645 Predicted kinase [General function prediction only]
Probab=94.83 E-value=0.022 Score=57.45 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=33.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~ 554 (899)
.++-+.|.+||||||+|+.|++.+|+..|..|..-+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~ 38 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKR 38 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHH
Confidence 4567899999999999999999999999999987664
No 466
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.024 Score=64.48 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l---~--~~vislDdfy~ 553 (899)
.++.+|++.||+||||||++..|+..+ | +.++++|.|--
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 357899999999999999999999766 2 56888987743
No 467
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.021 Score=65.74 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=29.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C--Cccccccccc
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF 552 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l----~--~~vislDdfy 552 (899)
.+.+|+++||+||||||++..|+..+ | +.++++|.|-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 46789999999999999999999754 2 5577777643
No 468
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.81 E-value=0.023 Score=57.29 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=23.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L 86 (899)
|.+++|+|.++||||||...|...|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 6799999999999999999998877
No 469
>PRK13768 GTPase; Provisional
Probab=94.81 E-value=0.03 Score=60.77 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=28.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN 95 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~ 95 (899)
+++|.|.|++||||||++..++..+ | +.+|+.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 5789999999999999999998766 3 56788886
No 470
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.76 E-value=0.03 Score=63.04 Aligned_cols=30 Identities=40% Similarity=0.522 Sum_probs=26.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCCeEE
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~~vI 91 (899)
...|+|.|++|||||||++.|+..+|..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 347999999999999999999998888764
No 471
>PRK10646 ADP-binding protein; Provisional
Probab=94.76 E-value=0.045 Score=54.73 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~~ 543 (899)
...-+|.+.|.-|||||||++.|++.||+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44568999999999999999999999984
No 472
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.75 E-value=0.04 Score=56.21 Aligned_cols=37 Identities=41% Similarity=0.575 Sum_probs=28.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhCC----eE--EecCcccc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIGC----TL--ISMENYRV 98 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg~----~v--I~~D~~~~ 98 (899)
...+.++||+|+|||.+|+.|++.+.. .+ ++|-.|-.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 457899999999999999999999984 44 45544533
No 473
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.75 E-value=0.032 Score=62.98 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (899)
+.|.+++|-||+|+|||.+|++++..+|+.+|.++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa 181 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA 181 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence 668999999999999999999999999987665544
No 474
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.052 Score=62.02 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=38.3
Q ss_pred cccc--cHHHHHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhCCe
Q 002620 40 SFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCT 89 (899)
Q Consensus 40 s~d~--~y~~l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~ 89 (899)
+|++ +-..+++.+......+.-+-.+.+.||+|+||||+|+.+++.++|.
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 4555 4556667666666655556678999999999999999999988763
No 475
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.021 Score=60.95 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l 541 (899)
=+|+|.||||||||||-+.++-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999765
No 476
>PRK10646 ADP-binding protein; Provisional
Probab=94.70 E-value=0.061 Score=53.80 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=25.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHhCC
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~Lg~ 88 (899)
+...+|.+.|.-|||||||++.|++.||+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33458999999999999999999999985
No 477
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.70 E-value=0.024 Score=66.05 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=31.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~-----~~vislDdf 551 (899)
..|.+|.++|++||||||++..|+..+. +.++++|.|
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4688999999999999999999998772 567777764
No 478
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=94.69 E-value=0.069 Score=52.89 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=27.0
Q ss_pred hcCCCcEEEEEECCCCCcHHHHHHHHHHHhC
Q 002620 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 57 ~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
..-+..-+|.+.|.-|||||||++.+++.||
T Consensus 20 ~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 20 EALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred hhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 3345667899999999999999999999888
No 479
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=94.69 E-value=0.22 Score=52.33 Aligned_cols=108 Identities=20% Similarity=0.127 Sum_probs=60.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHhC------CeEEecCcccccccc-CCCCCCccHHHHHHHHHhhhcCCccccccchh
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~~~-~~~p~s~d~~~l~~~L~~l~~~~~i~~p~~d~ 134 (899)
|.+|.|+|-+.|||||.|..|++.|. ...|.-|. .-+... ...-++-+...++..|..-.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de-slg~~~ns~y~~s~~EK~lRg~L~S~v------------ 67 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE-SLGIEKNSNYGDSQAEKALRGKLRSAV------------ 67 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh-hcCCCCcccccccHHHHHHHHHHHHHH------------
Confidence 56799999999999999999998773 22333332 222222 11122333334443333211
Q ss_pred hhhhcccccccccCCCcEEEEEccccch---------hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 002620 135 QQKNRIGSKVIKGASSGVVIVDGTYALD---------ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (899)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---------~~l~~~~D~~I~Vda~~~~rl~R~i~RD~ 191 (899)
.......++||+|...-.. .....-.-.+|+..+|.+.+.++--.|..
T Consensus 68 ---------~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~ 124 (281)
T KOG3062|consen 68 ---------DRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERED 124 (281)
T ss_pred ---------HhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCC
Confidence 1123446788888654322 11111123568889999999888766543
No 480
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.68 E-value=0.055 Score=66.77 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHh
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~L 86 (899)
-.|||.|.|||||||+++.|...+
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997644
No 481
>PF13173 AAA_14: AAA domain
Probab=94.68 E-value=0.031 Score=53.83 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=27.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC----Cccccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYF 552 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~----~~vislDdfy 552 (899)
.++.|.||.||||||+++.+++.+. +..+++|+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 4678899999999999999997654 4455555544
No 482
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.67 E-value=0.027 Score=58.69 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Q 002620 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (899)
Q Consensus 64 iIgItG~sGSGKSTlA~~La~~Lg 87 (899)
+|.|+||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998877553
No 483
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.67 E-value=0.025 Score=64.75 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 515 ~~~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
..|.+|+|+|++|||||||+..|...|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999998875
No 484
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.046 Score=57.49 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=80.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------ccc--ccC---CCccc------ccHHH-HH
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------VKD--FKY---DDFSS------LDLSL-LS 574 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~~~vislDdfy~~~~---------~~~--~~~---d~p~t------~D~~l-L~ 574 (899)
..++|.|-|+-||||||.++.|++.|...-+ +.+.+.+ .+. .+. .+|.+ -|... +.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~---~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI---KVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998842221 1222211 011 110 11211 11111 22
Q ss_pred HHHH-HHhcCCceecccccccccccCCccceeeccCCcEEEEEeecccchhhhh---cCCEEEEEEcCchhhHHHHhhcC
Q 002620 575 KNIS-DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRK---SLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 575 ~~L~-~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~dVVIvEG~~~~~~~l~~---~~D~~I~vd~~~d~rl~Rri~RD 650 (899)
+.+. .+..|..|-..+|..++--..+.. ...+ ++....++ .... .-|+++|++.|++..+.|...|.
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~-----~~~~---~~~~~~l~-~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~ 149 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGG-----RGLD---LDWVLALN-EFAPGGLKPDLTLYLDVPPEVALERIRKRG 149 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhc-----cCCC---HHHHHHHH-HhccCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 2222 245566666666666641111000 0000 00000011 1122 45899999999999999988876
Q ss_pred cc-ccccccchhhHHhhccchhhhhcccccCcccEEEcCCC
Q 002620 651 KS-RMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (899)
Q Consensus 651 ~~-~rg~~~~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (899)
.. .+-+. ....+...++..|......... .=++|+.+-
T Consensus 150 ~~~~r~E~-~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~ 188 (208)
T COG0125 150 ELRDRFEK-EDDEFLEKVREGYLELAAKFPE-RIIVIDASR 188 (208)
T ss_pred Cccchhhh-HHHHHHHHHHHHHHHHHhhCCC-eEEEEECCC
Confidence 54 11111 1123566677777776543322 234555543
No 485
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.65 E-value=0.048 Score=57.42 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEECCCCCcHHHHHHHHHHHhC-----CeEEecCcc
Q 002620 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (899)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgItG~sGSGKSTlA~~La~~Lg-----~~vI~~D~~ 96 (899)
+++.++.... ......|.|.|++|+||||+|+.++.... +..++++.+
T Consensus 25 ~~~~l~~~~~-~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 25 LLAALRQLAA-GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred HHHHHHHHHh-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4555554432 34456789999999999999999987652 344555544
No 486
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.64 E-value=0.046 Score=62.29 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=34.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccch
Q 002620 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKS 554 (899)
Q Consensus 516 ~~~iIgI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~ 554 (899)
+..+|.+.||+|.||||...+||..+. +.+|++|.|--.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG 247 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG 247 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence 478899999999999999999998763 779999999664
No 487
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.64 E-value=0.03 Score=56.45 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
.+|+|+|++||||||++..|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998773
No 488
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.026 Score=58.91 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHH
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLAS 84 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~ 84 (899)
++..|.++.|||||||||+.+.|-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 4567899999999999999999965
No 489
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.60 E-value=0.024 Score=57.11 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 002620 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (899)
Q Consensus 517 ~~iIgI~G~sGSGKTTla~~L~~~l~ 542 (899)
+.|+||+|.++||||||..+|...|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHH
Confidence 56899999999999999999998773
No 490
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.039 Score=62.78 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=32.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---C--CeEEecCcccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (899)
.+..+|+++||+||||||++..|+..+ | +.+|++|.|.-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 346789999999999999999998765 3 56799998743
No 491
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.59 E-value=0.02 Score=59.68 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANI 540 (899)
Q Consensus 514 ~~~~~iIgI~G~sGSGKTTla~~L~~~ 540 (899)
-....|.++.||||||||||.+.|-..
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 356678999999999999999998653
No 492
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.019 Score=58.74 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=36.3
Q ss_pred cCCcEEEEEeecccc-hhhhhcCCEEEEEEcCchhhHHHHhhcCccccc
Q 002620 608 EDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (899)
Q Consensus 608 ~~~dVVIvEG~~~~~-~~l~~~~D~~I~vd~~~d~rl~Rri~RD~~~rg 655 (899)
...++.|++-|+-.- ...+=.+|..||+.+++++++.|..+|-..+.+
T Consensus 132 ~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~ 180 (244)
T KOG4235|consen 132 NEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRAREEEK 180 (244)
T ss_pred ccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHhhhhhc
Confidence 346788889898643 333345799999999999999999988655443
No 493
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.57 E-value=0.04 Score=54.84 Aligned_cols=32 Identities=41% Similarity=0.580 Sum_probs=25.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc
Q 002620 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (899)
Q Consensus 63 ~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (899)
.-|.|+|+|||||||+|..|.+ .|..+++=|.
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~-~g~~lvaDD~ 46 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIK-RGHRLVADDR 46 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeEEECCE
Confidence 3589999999999999999976 4777775444
No 494
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.56 E-value=0.03 Score=61.39 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=28.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHHHh---C-CeEEecCc
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVI---G-CTLISMEN 95 (899)
Q Consensus 62 ~~iIgItG~sGSGKSTlA~~La~~L---g-~~vI~~D~ 95 (899)
|.+|+|+|.+|||||||+..|+..| | +.+|..|.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRGRVGTVKHMD 38 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 5689999999999999999999877 3 45566654
No 495
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.04 Score=63.34 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=31.6
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHh---------CCeEEecCccc
Q 002620 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---------GCTLISMENYR 97 (899)
Q Consensus 60 ~~~~iIgItG~sGSGKSTlA~~La~~L---------g~~vI~~D~~~ 97 (899)
.++.+|++.|++|+||||++..||..+ .+.++++|.|.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 346799999999999999999999765 25678999863
No 496
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.53 E-value=0.07 Score=63.19 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=42.1
Q ss_pred CCccccccc--cHHHHHHHHHHHH-------hc--CCCcEEEEEECCCCCcHHHHHHHHHHHhCCeEEecCc
Q 002620 35 LPVHASFDH--GYYLLVKSIQELR-------EK--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (899)
Q Consensus 35 ~~~~is~d~--~y~~l~~~i~~~~-------~~--~~~~~iIgItG~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (899)
.+...+|++ ++..+.+.+.... .+ -+.+.-|.+.||+|+|||.+|+.+|..+|.+++..|.
T Consensus 221 ~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 221 YSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 345566776 5554444443321 11 1345679999999999999999999999988776653
No 497
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.53 E-value=0.048 Score=57.75 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=24.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh-----CCccccccc
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLES 550 (899)
Q Consensus 518 ~iIgI~G~sGSGKTTla~~L~~~l-----~~~vislDd 550 (899)
..+.|.|++|||||++++.++..+ .+.+++..+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 345679999999999999999875 344555443
No 498
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.52 E-value=0.025 Score=58.19 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 002620 519 IVGIGGPSGSGKTSLAHKMA 538 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~ 538 (899)
++||.|++|||||||.+.|+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred EEEEECCCCCCHHHHHHHHh
No 499
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.49 E-value=0.068 Score=60.96 Aligned_cols=39 Identities=33% Similarity=0.590 Sum_probs=33.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHHHHhC-------CeEEecCccccc
Q 002620 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG 99 (899)
Q Consensus 61 ~~~iIgItG~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~ 99 (899)
+..+|++.||+|+||||....||.++. +.+|++|.|.-+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG 247 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG 247 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence 378999999999999999999998764 789999998543
No 500
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.49 E-value=0.022 Score=55.02 Aligned_cols=20 Identities=55% Similarity=0.891 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 002620 519 IVGIGGPSGSGKTSLAHKMA 538 (899)
Q Consensus 519 iIgI~G~sGSGKTTla~~L~ 538 (899)
+++|.|++|||||||.+.|+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEEccCCCccccceeeec
Done!