Query 002620
Match_columns 899
No_of_seqs 646 out of 3632
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 16:58:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002620.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1337-1341//hhsearch_pdb/002620hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 1.0 1 1 229.3 10.6 241 454-695 17-314 (321)
2 3tqc_A Pantothenate kinase; bi 1.0 1 1 223.5 14.4 220 9-228 15-310 (321)
3 1sq5_A Pantothenate kinase; P- 1.0 1 1 185.8 10.9 177 515-692 78-299 (308)
4 1sq5_A Pantothenate kinase; P- 1.0 1 1 184.0 13.5 217 10-226 4-296 (308)
5 1a7j_A Phosphoribulokinase; tr 1.0 1 1 181.1 11.1 176 515-690 3-216 (290)
6 3ghx_A Adenylate cyclase CYAB; 1.0 1 1 173.9 12.4 128 253-395 35-178 (179)
7 1odf_A YGR205W, hypothetical 3 1.0 1 1 173.6 12.1 178 513-691 27-278 (290)
8 3aez_A Pantothenate kinase; tr 1.0 1 1 173.5 14.6 240 454-694 11-304 (312)
9 1uj2_A Uridine-cytidine kinase 1.0 1 1 172.2 14.3 173 514-688 19-212 (252)
10 3aez_A Pantothenate kinase; tr 1.0 1 1 172.0 14.7 219 10-228 10-301 (312)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=1.00 E-value=1 Score=229.26 Aligned_cols=241 Identities=17% Similarity=0.209 Sum_probs=182.3
Q ss_pred CCCCCCCCEECCCCCCCCCCC--CCCCCCCCCCEEEECCCCCC-CCCHHHHHHHHHHHHHH-------H--CCCCCEEEE
Q ss_conf 422223310034588867875--33588766621000179984-10024589999999998-------7--289988994
Q 002620 454 MEPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL-------E--NKGLPVIVG 521 (899)
Q Consensus 454 ~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~e~~~~~i~~i~~l~-------~--~~~~~~iIG 521 (899)
+.....+|+.+..+.++++++ +....++++.+.+..+.+-| ++.+.+.+.....+.+. . ..+.|++||
T Consensus 17 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iig 96 (321)
T 3tqc_A 17 LQFNRQQWGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIG 96 (321)
T ss_dssp EEEEHHHHTC------CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEE
T ss_pred EEECHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 57789999988438999999999998547898768999999999999998986263488999999974457789878999
Q ss_pred EECCCCCCHHHHHHHHHHHHC-------CCCCCCCCCCCHHHC----C-CCCCCCCCCCCHHHHHHHHHHHHCCC-CEEC
Q ss_conf 308888538999999998929-------931045441130100----1-24678956111999999999886499-4102
Q 002620 522 IGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----K-DFKYDDFSSLDLSLLSKNISDIRNGR-RTKV 588 (899)
Q Consensus 522 I~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~-~~~~d~p~t~D~~lL~~~L~~L~~g~-~v~~ 588 (899)
|+||+||||||+++.|...++ +.++++|+||.+... . ..+++.|+++|.+++.+.+..++.|+ .+.+
T Consensus 97 I~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~ 176 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRI 176 (321)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEE
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 87999999999999999985026899828999404422550344567887603684200289999988753034553035
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCHH-----------HHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCC
Q ss_conf 445622354578642022168728999921145065-----------650198799999490465789865074222544
Q 002620 589 PIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-----------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (899)
Q Consensus 589 P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~~-----------l~~~~D~~I~v~~~~d~rL~Rri~RD~~~rg~~ 657 (899)
|.||+..+++.+. .+....+.+|||+||++++++. +.+.+|++|||+++.++++.|++.||...+|..
T Consensus 177 P~yd~~~~~r~~~-~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a 255 (321)
T 3tqc_A 177 PVYSHHYYDIVRG-QYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTT 255 (321)
T ss_dssp EEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTG
T ss_pred CHHHHHCCCCCCC-CEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCHHHHHH
T ss_conf 5112100363567-346606897899971330346544444420456665348489998999999999998611322101
Q ss_pred CCH---------------------HHHHHHCCCHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf 433---------------------23775203035530145567552998199998778
Q 002620 658 MSQ---------------------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695 (899)
Q Consensus 658 ~~~---------------------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl~ 695 (899)
... .+|.....|.+++||.|++..||++++.+.+....
T Consensus 256 ~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~v~ 314 (321)
T 3tqc_A 256 FKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSIQ 314 (321)
T ss_dssp GGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSCEE
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCEE
T ss_conf 02728889988347999999999999986463278874746766756999608997277
No 2
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=1.00 E-value=1 Score=223.49 Aligned_cols=220 Identities=15% Similarity=0.180 Sum_probs=180.9
Q ss_pred HHHCCCCCCCCC-CCCCCCC----CCCCCCCCCCCCCCCC---CHHHHHHHHHHHH--------------H--CCCCCEE
Q ss_conf 853047331245-9888999----9732245885222000---0899999999988--------------6--1799599
Q 002620 9 VFEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELR--------------E--KKGGIVT 64 (899)
Q Consensus 9 ~~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~is~d~---~y~~l~~~i~~~~--------------~--~~~~~~i 64 (899)
-|.+|+|+.|+. ..+++++ +...++++++.+++++ +|.++++.+.... + ....+++
T Consensus 15 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~i 94 (321)
T 3tqc_A 15 PYLQFNRQQWGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYI 94 (321)
T ss_dssp SEEEEEHHHHTC------CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEE
T ss_pred CCEEECHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 84577899999884389999999999985478987689999999999999989862634889999999744577898789
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-------CEEEECCCCCCC---------CCCCCCCCCCCHHHHHHHHHHHHCCC-CC
Q ss_conf 99988889838999999999849-------909945751122---------23599988765899999998532399-62
Q 002620 65 VGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGK-DT 127 (899)
Q Consensus 65 IgI~G~sGSGKTTla~~La~~Lg-------~~vI~~D~~y~~---------~~~~~~p~~~d~~~l~~~L~~l~~~~-~i 127 (899)
|||+|++||||||+++.|+..++ +.++++|+||.. ....+.|+++|.+.+.+.+..+..++ .+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v 174 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNV 174 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 99879999999999999999850268998289994044225503445678876036842002899999887530345530
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHH-----------HHCCCCEEEEEECCHHHHHHHHHHHCCCCC--
Q ss_conf 2243006543001211000489749999813332453-----------303797899999598999999997025895--
Q 002620 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS-- 194 (899)
Q Consensus 128 ~~p~~d~~~~~r~~~~~~~~~~~~vvIiEG~~~~~~~-----------l~~~~D~~I~Ida~~~~~l~Rri~RD~~~~-- 194 (899)
.+|.||+..+++.........+.+++|+||+++++.. +.+.+|++|||+++.+++++|++.||...+
T Consensus 175 ~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~ 254 (321)
T 3tqc_A 175 RIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRT 254 (321)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCHHHHH
T ss_conf 35511210036356734660689789997133034654444442045666534848999899999999999861132210
Q ss_pred --------------CCHHHHH---H----HH-CHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf --------------4899999---8----42-177531039976768599989998
Q 002620 195 --------------CSLDSLI---D----SI-FPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 195 --------------~~~e~~~---~----~~-~p~~~k~I~p~~~~ADiII~N~~~ 228 (899)
.+.++.. . .+ .|++++||.|++.+||+|++.+-.
T Consensus 255 a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~ 310 (321)
T 3tqc_A 255 TFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAAD 310 (321)
T ss_dssp GGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTT
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCC
T ss_conf 10272888998834799999999999998646327887474676675699960899
No 3
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=1.00 E-value=1 Score=185.78 Aligned_cols=177 Identities=18% Similarity=0.180 Sum_probs=139.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC-------CCCCCCCCCCCHHHC----CC-CCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 9988994308888538999999998929-------931045441130100----12-46789561119999999998864
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KD-FKYDDFSSLDLSLLSKNISDIRN 582 (899)
Q Consensus 515 ~~~~iIGI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~~-~~~d~p~t~D~~lL~~~L~~L~~ 582 (899)
+.+.+|||+||+||||||+++.|+..++ +.++++|+++.+... .. ..++.+.+++...+...+..+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99879998899998899999999998720899975999725785485999985777516898977659999999999867
Q ss_pred CCC-EECCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCH-----------HHHHCCCEEEEEECCCHHHHHHHHHCC
Q ss_conf 994-10244562235457864202216872899992114506-----------565019879999949046578986507
Q 002620 583 GRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----------EIRKSLDLWIAVVGGVHSHLISRVQRD 650 (899)
Q Consensus 583 g~~-v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~~-----------~l~~~~D~~I~v~~~~d~rL~Rri~RD 650 (899)
+.. +.+|.||++.+++.+. .+....+.++||+|||+++++ .+.+.+|.+|||++|.++++.|++.|+
T Consensus 158 ~~~~i~~P~~~~~~~~~~~~-~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~ 236 (308)
T 1sq5_A 158 GVPNVTAPVYSHLIYDVIPD-GDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRF 236 (308)
T ss_dssp TCSCEEECCEETTTTEECTT-CCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCCEECCCCCCCCCCCCCC-CCEECCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHCCEEEEEECCHHHHHHHHHHHH
T ss_conf 99823034325423575655-33003899889988634378732365554467899858889999799999999999999
Q ss_pred CCCC---------------CCCCCH------HHHHHHCCCHHHHHCCCCCCCCCEEECCCCCC
Q ss_conf 4222---------------544433------23775203035530145567552998199998
Q 002620 651 KSRM---------------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (899)
Q Consensus 651 ~~~r---------------g~~~~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (899)
...| |.+.++ .||...+.|++..||+|.+..||++|+|+.+.
T Consensus 237 ~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~~ 299 (308)
T 1sq5_A 237 LKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANH 299 (308)
T ss_dssp HHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGG
T ss_pred HHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 999985145872011023689999999999999985228889987256665673899837997
No 4
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=1.00 E-value=1 Score=184.02 Aligned_cols=217 Identities=15% Similarity=0.197 Sum_probs=164.0
Q ss_pred HHCCCCCCCCC-CCCCCCC----CCCCCCCCCCCCCCCC---CHHHHHHHHHHHH----------------HCCCCCEEE
Q ss_conf 53047331245-9888999----9732245885222000---0899999999988----------------617995999
Q 002620 10 FEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELR----------------EKKGGIVTV 65 (899)
Q Consensus 10 ~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~is~d~---~y~~l~~~i~~~~----------------~~~~~~~iI 65 (899)
|.+++|..|++ ....+.+ +...+...+..+++++ .|.++++.+.... .....+.+|
T Consensus 4 ~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~ii 83 (308)
T 1sq5_A 4 YLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYII 83 (308)
T ss_dssp EEEEEHHHHHHTCC---C-CCHHHHHHHHHHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEE
T ss_pred CEEECHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 37877999997601699889999998621776310357699999999999999873005589999987346889998799
Q ss_pred EEECCCCCCHHHHHHHHHHHHC-------CEEEECCCCCCC--------C-CCCCCCCCCCHHHHHHHHHHHHCCCC-CC
Q ss_conf 9988889838999999999849-------909945751122--------2-35999887658999999985323996-22
Q 002620 66 GIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG--------V-DEGNDLDSIDFDALVQNLQDLTEGKD-TL 128 (899)
Q Consensus 66 gI~G~sGSGKTTla~~La~~Lg-------~~vI~~D~~y~~--------~-~~~~~p~~~d~~~l~~~L~~l~~~~~-i~ 128 (899)
||+|++||||||+++.|+..++ +.++++|+++.. + ...+.+.+++...+...+..+..+.. +.
T Consensus 84 gI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~ 163 (308)
T 1sq5_A 84 SIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVT 163 (308)
T ss_dssp EEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 98899998899999999998720899975999725785485999985777516898977659999999999867998230
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCHH-----------HHHCCCCEEEEEECCHHHHHHHHHHHCCC-----
Q ss_conf 24300654300121100048974999981333245-----------33037978999995989999999970258-----
Q 002620 129 IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----------RLRSLLDIRVAVVGGVHFSLISKVQYDIG----- 192 (899)
Q Consensus 129 ~p~~d~~~~~r~~~~~~~~~~~~vvIiEG~~~~~~-----------~l~~~~D~~I~Ida~~~~~l~Rri~RD~~----- 192 (899)
+|.|++..+.+...........+++|+||+++++. .+.+.+|.+|||+++.+++++|++.|+..
T Consensus 164 ~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~ 243 (308)
T 1sq5_A 164 APVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGA 243 (308)
T ss_dssp ECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCEECCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 34325423575655330038998899886343787323655544678998588899997999999999999999999851
Q ss_pred C-----------CCCHHHHHH---H-----HCHHHHHHCCCCCCCCCEEEECC
Q ss_conf 9-----------548999998---4-----21775310399767685999899
Q 002620 193 D-----------SCSLDSLID---S-----IFPLFRKHIEPDLHHAQIRINNR 226 (899)
Q Consensus 193 ~-----------~~~~e~~~~---~-----~~p~~~k~I~p~~~~ADiII~N~ 226 (899)
. ..+.+++.+ . ..|++.+||+|.+.+||+||+|+
T Consensus 244 ~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~ 296 (308)
T 1sq5_A 244 FTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp TTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred CCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 45872011023689999999999999985228889987256665673899837
No 5
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=1.00 E-value=1 Score=181.07 Aligned_cols=176 Identities=15% Similarity=0.287 Sum_probs=139.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC-----CCCCCCCCCCC-HHHC-----------CCCCCCC--CCCCCHHHHHH
Q ss_conf 9988994308888538999999998929-----93104544113-0100-----------1246789--56111999999
Q 002620 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQV-----------KDFKYDD--FSSLDLSLLSK 575 (899)
Q Consensus 515 ~~~~iIGI~G~sGSGKTTla~~L~~~l~-----~~vislDdfy~-~~~~-----------~~~~~d~--p~t~D~~lL~~ 575 (899)
.++++|||+||+||||||+|+.|++.++ +.++++|+||+ +... +..+++. |+++|.+.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER 82 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHH
T ss_conf 99649999898999999999999999725288714764330101798774565544543267676877800316999999
Q ss_pred HHHHHHCCCCEECCCCCC-----CCCCCCCC--CCEEEC-CCCCEEEEEEECCC----CHHHHHCCCEEEEEECCCHHHH
Q ss_conf 999886499410244562-----23545786--420221-68728999921145----0656501987999994904657
Q 002620 576 NISDIRNGRRTKVPIFDL-----ETGARSGF--KELEVS-EDCGVIIFEGVYAL----HPEIRKSLDLWIAVVGGVHSHL 643 (899)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~-----~~~dr~~~--~~~~~~-~~~dVVIvEG~~~~----~~~l~~~~D~~I~v~~~~d~rL 643 (899)
.+..+..++.+..|.|++ ..+.+... ..|... .+.+++|+||++++ ...+.+.+|.+|||+++.++++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEECCHHHHH
T ss_conf 99999749960550530552101236888774043001279997899971332445435768986888999989988999
Q ss_pred HHHHHCCCCCCCCCCCH-HHHHHHCCCHHHHHCCCCCCCCCE------EECCCC
Q ss_conf 89865074222544433-237752030355301455675529------981999
Q 002620 644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHL------KIRNDF 690 (899)
Q Consensus 644 ~Rri~RD~~~rg~~~~~-~q~~~~v~p~~~~~I~p~~~~ADi------vI~n~~ 690 (899)
.|++.||...||.+.+. .+......|.+..||+|.+..||+ +|+|+.
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEECCCCEECCCC
T ss_conf 999664431349986899999997170178762331313988632574315887
No 6
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=1.00 E-value=1 Score=173.89 Aligned_cols=128 Identities=12% Similarity=0.120 Sum_probs=113.2
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEC--CEEEEEECCEEECCCCCCCCCEEEEEEEH----HHHHHHHH
Q ss_conf 1354322001000356999852000248803386519--97999984202038975456116999733----08989985
Q 002620 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD 326 (899)
Q Consensus 253 f~~~~~e~D~Y~~~~~r~~~~~dea~~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~ 326 (899)
+.+...|+|+||+.|.++++.++.++ |||..+ ++..+|||||+.+. +.|+.| +|..+|..
T Consensus 35 ~~~~~~q~d~yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~~t~Kgp~~~~---------~~e~~v~d~~~~~~iL~~ 100 (179)
T 3ghx_A 35 FTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGPGAER---------CEASNIEDVSKVQSMLAT 100 (179)
T ss_dssp EEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECSSSSB---------EEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEEEEECCCCCHHHCCCEE-----EEEEECCCCCEEEEEECCCCCC---------EEEEECCCHHHHHHHHHH
T ss_conf 05764499999958982477789479-----9888649982999995688881---------799972999999999998
Q ss_pred CCCCEEEEEEEEEEEEEECCEEEEEECCCCCCCCEEEEEEC--CH-------HHHHHHHHHCCCCCCC-CCHHHHHHHH
Q ss_conf 69835489999999999498999974469999982899932--87-------7899999992999995-4114799998
Q 002620 327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMVL 395 (899)
Q Consensus 327 LGy~~~~~~~K~R~~~~~~~~~v~lD~v~~lG~~FvEiE~~--~~-------~~i~~~a~~Lgl~~~~-~~~sYlel~l 395 (899)
|||.++..++|.|++|.+++++|+||+|++||. |+|||++ ++ +.+.+++.+||+..+. +++||+||++
T Consensus 101 LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG~-f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl~ 178 (179)
T 3ghx_A 101 LGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLLG 178 (179)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHHT
T ss_pred CCCCEEEEEEEEEEEEEECCEEEEEECCCCCCC-EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHCEEHHHHHHHH
T ss_conf 799478999999999998999999986479830-899999818845679999999999998595824323164999954
No 7
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=1.00 E-value=1 Score=173.58 Aligned_cols=178 Identities=18% Similarity=0.271 Sum_probs=133.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHC-------CCCC-CCCCCCCHHHCC-C-----------CCCCCCCCCCHHH
Q ss_conf 289988994308888538999999998929-------9310-454411301001-2-----------4678956111999
Q 002620 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVV-SLESYFKSEQVK-D-----------FKYDDFSSLDLSL 572 (899)
Q Consensus 513 ~~~~~~iIGI~G~sGSGKTTla~~L~~~l~-------~~vi-slDdfy~~~~~~-~-----------~~~d~p~t~D~~l 572 (899)
..+.+.+|||+|++||||||+++.|+..++ +..+ ++|+||.+.... . ..++.|+++|.++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCHHHHHH
T ss_conf 57998699997799888999999999983212777754898154642378589998753365540444346822668998
Q ss_pred HHHHHHHHHCC------CCEECCCCCCCC----CCCCCCCCEEECCCCCEEEEEEECCCC-HH-----------------
Q ss_conf 99999988649------941024456223----545786420221687289999211450-65-----------------
Q 002620 573 LSKNISDIRNG------RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PE----------------- 624 (899)
Q Consensus 573 L~~~L~~L~~g------~~v~~P~yD~~~----~dr~~~~~~~~~~~~dVVIvEG~~~~~-~~----------------- 624 (899)
+.+.+..++.| +.+.+|.||+.. ++|.+...+... +.+|+|+|||+++. +.
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~ 185 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 185 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEC-CCCEEEEECCCCCCCCCCHHHHHCCCCHHHHHHH
T ss_conf 999999866667656676456045761267766530334542575-8998999473003885520232022221468898
Q ss_pred ----------HHHCCCEE---EEEECCCHHHHHH-HHHC--C-CCCC--CCCCCH-HHHHHHCCCHHHHHCCCCC-----
Q ss_conf ----------65019879---9999490465789-8650--7-4222--544433-2377520303553014556-----
Q 002620 625 ----------IRKSLDLW---IAVVGGVHSHLIS-RVQR--D-KSRM--GCFMSQ-NDIMMTVFPMFQQHIEPHL----- 679 (899)
Q Consensus 625 ----------l~~~~D~~---I~v~~~~d~rL~R-ri~R--D-~~~r--g~~~~~-~q~~~~v~p~~~~~I~p~~----- 679 (899)
+++++|++ ||++++.+.++.| |+.| | ..++ |.+.+. .+|...++|+|+.|++|..
T Consensus 186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
T ss_conf 88899888988865022032599978987899999999999999864599999999999998532487776779874667
Q ss_pred -CCCCEEECCCCC
Q ss_conf -755299819999
Q 002620 680 -VHAHLKIRNDFD 691 (899)
Q Consensus 680 -~~ADivI~n~~~ 691 (899)
..||+++..+.+
T Consensus 266 ~~~adlvl~~~~~ 278 (290)
T 1odf_A 266 GSIATLTLGIDSN 278 (290)
T ss_dssp SSSEEEEEEECTT
T ss_pred CCCCCEEEEECCC
T ss_conf 8888889998899
No 8
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=1.00 E-value=1 Score=173.46 Aligned_cols=240 Identities=18% Similarity=0.247 Sum_probs=164.8
Q ss_pred CCCCCCCCEECCCCCCCCCCC--CCCCCCCCCCEEEECCCCCC-CCCHHHHHHHHHHHHHH-------------HCCCCC
Q ss_conf 422223310034588867875--33588766621000179984-10024589999999998-------------728998
Q 002620 454 MEPVLATWHFISSDPSHAGSS--VIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL-------------ENKGLP 517 (899)
Q Consensus 454 ~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l-~~~e~~~~~i~~i~~l~-------------~~~~~~ 517 (899)
......+|+.+....+..+++ .....++++.+.+..+...| +..+.+.+.+.+.+.+. ...+.+
T Consensus 11 ~~~~r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 90 (312)
T 3aez_A 11 VEFDRRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP 90 (312)
T ss_dssp EEEEHHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC
T ss_pred EEECHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 46779999998841899999899974569997078612455266599999998865667888777765023323578999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHC-------CCCCCCCCCCCHHHC----CCC-CCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8994308888538999999998929-------931045441130100----124-6789561119999999998864994
Q 002620 518 VIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR 585 (899)
Q Consensus 518 ~iIGI~G~sGSGKTTla~~L~~~l~-------~~vislDdfy~~~~~----~~~-~~d~p~t~D~~lL~~~L~~L~~g~~ 585 (899)
.+|||.||+||||||+++.|+..+. +.++++|+|+.+... ... .++.|.++|.+.+.+.+..+..+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~ 170 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD 170 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 79999899981199999999725355689970899936766786339999999985599858899999999998478734
Q ss_pred -EECCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCC----HHHHHCCCEEEEEECCCHHHHHHHHHCCCCCC------
Q ss_conf -1024456223545786420221687289999211450----65650198799999490465789865074222------
Q 002620 586 -TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM------ 654 (899)
Q Consensus 586 -v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rL~Rri~RD~~~r------ 654 (899)
+..|.|++..+.|... ......+.+++|+||++++. +.+.+.+|.+|||+++.+.++.|++.|+...+
T Consensus 171 ~~~~~~lS~G~~qRv~~-a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~ 249 (312)
T 3aez_A 171 YACAPVYSHLHYDIIPG-AEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD 249 (312)
T ss_dssp CEEEEEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred CCCCCCCCHHHHHHHHH-HHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 48713288126666665-78743699989978820047864589999659589999999999999999999998512358
Q ss_pred ---------CCCCCH------HHHHHHCCCHHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf ---------544433------2377520303553014556755299819999877
Q 002620 655 ---------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (899)
Q Consensus 655 ---------g~~~~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~rl 694 (899)
|.+.++ .+|...+.|++.+||.|++..||++|+++.+...
T Consensus 250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~~v 304 (312)
T 3aez_A 250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSI 304 (312)
T ss_dssp TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTSCE
T ss_pred CCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCE
T ss_conf 5112101468999999999999998544777998664787777699961899846
No 9
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=1.00 E-value=1 Score=172.16 Aligned_cols=173 Identities=26% Similarity=0.481 Sum_probs=141.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCC----------CCCCCCCCCHH--------HCCCCCCCCCCCCCHHHHHH
Q ss_conf 8998899430888853899999999892993----------10454411301--------00124678956111999999
Q 002620 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKSE--------QVKDFKYDDFSSLDLSLLSK 575 (899)
Q Consensus 514 ~~~~~iIGI~G~sGSGKTTla~~L~~~l~~~----------vislDdfy~~~--------~~~~~~~d~p~t~D~~lL~~ 575 (899)
.+.|++|||+|++||||||+|+.|+..++.. ++++|+||+.. ..+...|++|+++|.+++.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 89857999889899999999999999853200244688428973675530037555322105887778920314999999
Q ss_pred HHHHHHCCCCEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCC-CHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCC
Q ss_conf 9998864994102445622354578642022168728999921145-065650198799999490465789865074222
Q 002620 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (899)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~dr~~~~~~~~~~~~dVVIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rL~Rri~RD~~~r 654 (899)
.|+.+..+..+..|.||+..+.+.. .+....+.++||+||++++ .+.+.+.+|..||++++.++++.|+..|+...+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~--~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKE--ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEE--EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCEEECCCCCCCCCCCCC--CEEEECCCCEEEEEEECCCCCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 9999976990535744540356777--61662799689994360036888997548018983788899999999887660
Q ss_pred CCCCCH--HHHHHHCCCHHHHHCCCCCCCCCEEECC
Q ss_conf 544433--2377520303553014556755299819
Q 002620 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (899)
Q Consensus 655 g~~~~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n 688 (899)
|.+.+. .++.....+.+..+++|....||++|++
T Consensus 177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~ 212 (252)
T 1uj2_A 177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPR 212 (252)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEET
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 799999999999842477999850455339689956
No 10
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=1.00 E-value=1 Score=172.00 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=168.9
Q ss_pred HHCCCCCCCCC-CCCCCCC----CCCCCCCCCCCCCCCC---CHHHHHHHHHHHH--------------------HCCCC
Q ss_conf 53047331245-9888999----9732245885222000---0899999999988--------------------61799
Q 002620 10 FEEGGRDYFQQ-QPSTSSS----SPSILQSLPVHASFDH---GYYLLVKSIQELR--------------------EKKGG 61 (899)
Q Consensus 10 ~~~~~r~~~~~-~~~~~~~----~~~~~~~~~~~is~d~---~y~~l~~~i~~~~--------------------~~~~~ 61 (899)
|.+++|+.|+. ....+.+ +...+.+++..+++++ .|.++.+.+.... ...+.
T Consensus 10 ~~~~~r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 89 (312)
T 3aez_A 10 YVEFDRRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPV 89 (312)
T ss_dssp EEEEEHHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCC
T ss_pred CEEECHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 14677999999884189999989997456999707861245526659999999886566788877776502332357899
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC-------CEEEECCCCCCCC---------CCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 59999988889838999999999849-------9099457511222---------3599988765899999998532399
Q 002620 62 IVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGK 125 (899)
Q Consensus 62 ~~iIgI~G~sGSGKTTla~~La~~Lg-------~~vI~~D~~y~~~---------~~~~~p~~~d~~~l~~~L~~l~~~~ 125 (899)
..+|||.|++||||||+++.|+..+. +.++++|+++.+. ..++.+++++.+.+.+.+..+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~ 169 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGS 169 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 97999989998119999999972535568997089993676678633999999998559985889999999999847873
Q ss_pred C-CCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCH----HHHHCCCCEEEEEECCHHHHHHHHHHHCCC-----C--
Q ss_conf 6-222430065430012110004897499998133324----533037978999995989999999970258-----9--
Q 002620 126 D-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-- 193 (899)
Q Consensus 126 ~-i~~p~~d~~~~~r~~~~~~~~~~~~vvIiEG~~~~~----~~l~~~~D~~I~Ida~~~~~l~Rri~RD~~-----~-- 193 (899)
. ...|.|++..+.++.........++++|+||++++. ..+.+.+|++|||+++.+.+..|++.|+.. .
T Consensus 170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~ 249 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD 249 (312)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 44871328812666666578743699989978820047864589999659589999999999999999999998512358
Q ss_pred ---------CCCHHHHHH--------HHCHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf ---------548999998--------42177531039976768599989998
Q 002620 194 ---------SCSLDSLID--------SIFPLFRKHIEPDLHHAQIRINNRFV 228 (899)
Q Consensus 194 ---------~~~~e~~~~--------~~~p~~~k~I~p~~~~ADiII~N~~~ 228 (899)
..+.++..+ ...|++.+||.|++.+||+||+|+-.
T Consensus 250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~ 301 (312)
T 3aez_A 250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDAD 301 (312)
T ss_dssp TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTT
T ss_pred CCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 5112101468999999999999998544777998664787777699961899
Done!