Query 002622
Match_columns 899
No_of_seqs 143 out of 191
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 03:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00395 SLH: S-layer homology 98.9 7.7E-10 1.7E-14 86.7 4.3 44 449-503 1-45 (45)
2 PF00395 SLH: S-layer homology 97.8 2.6E-05 5.6E-10 61.3 3.8 44 527-576 1-45 (45)
3 PF08317 Spc7: Spc7 kinetochor 96.4 0.34 7.4E-06 52.8 19.6 166 563-755 123-290 (325)
4 KOG0018 Structural maintenance 96.0 2.2 4.7E-05 53.6 25.6 251 616-889 226-515 (1141)
5 KOG1029 Endocytic adaptor prot 96.0 1.4 3E-05 53.8 23.0 87 642-730 399-500 (1118)
6 TIGR03185 DNA_S_dndD DNA sulfu 95.3 8.7 0.00019 45.7 32.3 88 631-718 229-316 (650)
7 smart00787 Spc7 Spc7 kinetocho 95.1 0.82 1.8E-05 50.4 16.4 165 563-755 118-285 (312)
8 PRK00106 hypothetical protein; 94.9 3 6.6E-05 49.2 20.8 11 763-773 255-265 (535)
9 KOG1029 Endocytic adaptor prot 94.8 8.7 0.00019 47.5 24.3 85 627-733 363-450 (1118)
10 COG4942 Membrane-bound metallo 94.4 9.3 0.0002 44.3 22.7 111 634-751 145-255 (420)
11 KOG0994 Extracellular matrix g 94.3 17 0.00037 46.8 25.7 93 667-759 1464-1578(1758)
12 PF09726 Macoilin: Transmembra 94.1 9.9 0.00022 46.4 23.3 96 587-685 422-523 (697)
13 PF09726 Macoilin: Transmembra 93.9 13 0.00028 45.4 23.8 89 676-764 462-575 (697)
14 PF12128 DUF3584: Protein of u 93.9 26 0.00056 44.9 33.1 186 616-814 716-919 (1201)
15 PRK00106 hypothetical protein; 93.6 9.1 0.0002 45.4 21.2 37 724-761 179-217 (535)
16 PRK12704 phosphodiesterase; Pr 93.3 13 0.00028 43.8 22.0 39 722-761 162-202 (520)
17 COG1196 Smc Chromosome segrega 92.2 35 0.00077 43.6 25.0 21 404-424 111-131 (1163)
18 TIGR03319 YmdA_YtgF conserved 91.8 23 0.00051 41.7 21.4 96 662-761 99-196 (514)
19 KOG0161 Myosin class II heavy 91.1 74 0.0016 43.4 30.4 77 680-759 1254-1330(1930)
20 PF10186 Atg14: UV radiation r 90.9 22 0.00047 37.0 18.1 33 778-810 178-211 (302)
21 PRK11637 AmiB activator; Provi 90.7 34 0.00073 38.8 24.1 43 661-703 174-216 (428)
22 PRK12704 phosphodiesterase; Pr 90.6 29 0.00064 41.0 20.7 56 631-686 81-136 (520)
23 TIGR03319 YmdA_YtgF conserved 90.2 35 0.00075 40.4 20.8 83 631-717 75-167 (514)
24 KOG4302 Microtubule-associated 90.1 48 0.001 40.7 22.0 251 608-894 37-325 (660)
25 PTZ00121 MAEBL; Provisional 89.3 45 0.00098 44.2 21.7 23 43-66 290-312 (2084)
26 PF05667 DUF812: Protein of un 89.3 59 0.0013 39.3 28.4 30 701-730 393-422 (594)
27 TIGR02169 SMC_prok_A chromosom 89.1 67 0.0014 39.7 34.9 19 405-423 110-128 (1164)
28 KOG0980 Actin-binding protein 88.3 84 0.0018 39.9 23.4 267 593-898 424-702 (980)
29 PTZ00121 MAEBL; Provisional 88.3 68 0.0015 42.7 22.2 34 571-604 1087-1120(2084)
30 KOG0933 Structural maintenance 88.2 90 0.002 40.2 30.8 71 792-862 960-1036(1174)
31 TIGR01069 mutS2 MutS2 family p 88.0 4.8 0.0001 49.3 12.4 58 641-698 499-556 (771)
32 TIGR00606 rad50 rad50. This fa 87.7 1E+02 0.0022 40.1 29.9 12 106-117 43-54 (1311)
33 KOG0995 Centromere-associated 87.6 74 0.0016 38.5 30.4 66 620-685 289-371 (581)
34 PF12072 DUF3552: Domain of un 87.1 40 0.00087 34.9 21.3 88 594-685 44-131 (201)
35 KOG3850 Predicted membrane pro 87.0 33 0.00072 39.8 17.1 58 582-642 259-316 (455)
36 KOG0579 Ste20-like serine/thre 86.4 31 0.00068 42.6 17.3 76 620-695 836-948 (1187)
37 PF10186 Atg14: UV radiation r 86.3 46 0.00099 34.7 17.3 9 748-756 145-153 (302)
38 PF00769 ERM: Ezrin/radixin/mo 86.2 41 0.00088 36.1 16.6 74 657-730 32-106 (246)
39 PF00038 Filament: Intermediat 85.4 57 0.0012 34.9 19.1 119 611-735 181-305 (312)
40 PF05701 WEMBL: Weak chloropla 85.3 86 0.0019 37.0 22.5 114 609-722 248-364 (522)
41 COG1579 Zn-ribbon protein, pos 85.3 61 0.0013 35.3 17.8 60 676-735 91-150 (239)
42 PLN03188 kinesin-12 family pro 85.1 27 0.00058 45.4 16.7 119 604-725 1105-1252(1320)
43 KOG0612 Rho-associated, coiled 85.1 1.2E+02 0.0027 39.7 22.1 105 622-729 498-615 (1317)
44 PF12072 DUF3552: Domain of un 84.5 54 0.0012 34.0 19.8 59 663-721 88-146 (201)
45 PRK11637 AmiB activator; Provi 84.3 81 0.0017 35.9 26.1 13 587-599 44-56 (428)
46 KOG2685 Cystoskeletal protein 83.8 52 0.0011 38.4 16.9 145 562-718 21-194 (421)
47 KOG4673 Transcription factor T 83.6 1.3E+02 0.0028 37.6 28.0 71 627-701 390-469 (961)
48 KOG0161 Myosin class II heavy 83.5 2E+02 0.0042 39.7 35.4 100 594-697 861-962 (1930)
49 TIGR00634 recN DNA repair prot 83.4 54 0.0012 38.6 17.5 148 585-736 211-373 (563)
50 PRK00409 recombination and DNA 83.4 27 0.00058 43.2 15.5 12 677-688 569-580 (782)
51 PRK02224 chromosome segregatio 83.2 1.2E+02 0.0027 37.1 30.9 12 881-892 468-479 (880)
52 KOG0977 Nuclear envelope prote 82.9 93 0.002 37.6 19.0 28 701-728 203-234 (546)
53 PHA02562 46 endonuclease subun 82.8 97 0.0021 35.6 23.0 13 412-424 110-122 (562)
54 PF04156 IncA: IncA protein; 82.5 53 0.0012 32.9 14.8 29 624-652 94-122 (191)
55 PF08317 Spc7: Spc7 kinetochor 80.7 88 0.0019 34.6 16.9 104 608-716 130-244 (325)
56 KOG0996 Structural maintenance 80.4 2E+02 0.0044 37.8 28.2 59 705-763 436-494 (1293)
57 PRK04863 mukB cell division pr 79.8 1.6E+02 0.0036 39.3 21.3 14 410-423 146-159 (1486)
58 PRK12705 hypothetical protein; 79.8 1.4E+02 0.0031 35.6 20.0 14 762-775 227-240 (508)
59 PRK09039 hypothetical protein; 78.4 1.2E+02 0.0027 34.1 18.9 51 687-737 122-172 (343)
60 PRK00409 recombination and DNA 78.3 16 0.00035 45.0 11.3 58 633-697 503-560 (782)
61 PTZ00266 NIMA-related protein 78.2 23 0.00049 45.2 12.8 41 562-603 408-448 (1021)
62 PF09738 DUF2051: Double stran 78.2 44 0.00095 37.3 13.6 82 703-792 120-201 (302)
63 TIGR01069 mutS2 MutS2 family p 77.4 46 0.00099 41.2 14.8 47 644-690 530-577 (771)
64 COG1196 Smc Chromosome segrega 77.3 2.3E+02 0.005 36.6 33.8 16 490-505 112-127 (1163)
65 PF07888 CALCOCO1: Calcium bin 77.3 1.8E+02 0.0039 35.3 21.4 40 616-656 170-209 (546)
66 PRK09039 hypothetical protein; 77.1 1.3E+02 0.0029 33.8 20.8 23 581-604 44-66 (343)
67 PF10473 CENP-F_leu_zip: Leuci 77.0 87 0.0019 31.7 14.7 11 588-598 8-18 (140)
68 KOG0018 Structural maintenance 76.9 82 0.0018 40.6 16.6 84 676-761 418-501 (1141)
69 TIGR02168 SMC_prok_B chromosom 76.5 2E+02 0.0043 35.5 35.6 7 490-496 574-580 (1179)
70 PF10174 Cast: RIM-binding pro 75.9 1.5E+02 0.0034 37.1 18.6 160 596-762 11-204 (775)
71 PF09730 BicD: Microtubule-ass 74.3 1.6E+02 0.0034 36.8 17.9 112 632-743 34-148 (717)
72 PTZ00266 NIMA-related protein 74.2 51 0.0011 42.3 14.3 9 415-423 269-277 (1021)
73 PF10146 zf-C4H2: Zinc finger- 73.7 72 0.0015 34.4 13.4 47 627-674 3-49 (230)
74 COG4372 Uncharacterized protei 73.4 2E+02 0.0043 34.0 20.2 82 616-702 80-161 (499)
75 PF10168 Nup88: Nuclear pore c 73.4 95 0.0021 38.4 15.9 33 572-609 534-567 (717)
76 PF10267 Tmemb_cc2: Predicted 72.8 1.4E+02 0.0031 34.7 16.3 56 585-643 214-269 (395)
77 PF05565 Sipho_Gp157: Siphovir 72.7 46 0.001 33.5 11.1 79 676-761 3-81 (162)
78 TIGR03185 DNA_S_dndD DNA sulfu 71.3 2.4E+02 0.0052 34.0 27.2 15 611-625 183-197 (650)
79 PRK03918 chromosome segregatio 71.2 2.5E+02 0.0055 34.3 30.9 36 684-719 306-341 (880)
80 KOG4403 Cell surface glycoprot 71.2 1.5E+02 0.0033 35.2 15.9 35 721-755 341-375 (575)
81 PRK12705 hypothetical protein; 71.1 1.3E+02 0.0027 36.1 15.7 61 683-748 100-160 (508)
82 KOG1899 LAR transmembrane tyro 70.9 1.2E+02 0.0027 37.4 15.5 13 585-597 106-118 (861)
83 PRK11281 hypothetical protein; 70.9 3.4E+02 0.0073 35.6 23.2 27 736-762 229-255 (1113)
84 PF14362 DUF4407: Domain of un 70.1 1.7E+02 0.0036 31.7 17.6 32 622-653 132-163 (301)
85 TIGR00634 recN DNA repair prot 69.7 2.4E+02 0.0051 33.5 17.6 28 624-651 211-238 (563)
86 PRK10884 SH3 domain-containing 69.6 46 0.00099 35.2 10.7 24 631-654 92-115 (206)
87 KOG0976 Rho/Rac1-interacting s 69.5 3.3E+02 0.0071 34.9 26.4 210 654-869 376-631 (1265)
88 PF03962 Mnd1: Mnd1 family; I 69.5 56 0.0012 33.9 11.2 81 643-741 87-167 (188)
89 PHA02562 46 endonuclease subun 68.9 2.2E+02 0.0049 32.8 25.0 9 753-761 274-282 (562)
90 KOG0977 Nuclear envelope prote 68.8 1.2E+02 0.0026 36.7 14.9 90 617-713 84-173 (546)
91 PF10211 Ax_dynein_light: Axon 68.7 1.5E+02 0.0033 30.8 14.8 18 607-624 81-98 (189)
92 KOG4286 Dystrophin-like protei 68.6 3.3E+02 0.0072 34.6 20.1 188 631-854 91-293 (966)
93 PF05262 Borrelia_P83: Borreli 68.2 2.7E+02 0.0058 33.4 17.5 38 457-505 75-112 (489)
94 KOG0996 Structural maintenance 68.0 4E+02 0.0087 35.3 29.5 80 673-755 453-532 (1293)
95 KOG0976 Rho/Rac1-interacting s 67.3 3.6E+02 0.0078 34.6 27.4 111 616-730 272-396 (1265)
96 TIGR02169 SMC_prok_A chromosom 66.6 3.3E+02 0.0072 33.9 36.4 16 490-505 110-125 (1164)
97 PF04111 APG6: Autophagy prote 65.7 48 0.001 36.8 10.4 31 645-675 52-82 (314)
98 KOG0239 Kinesin (KAR3 subfamil 65.7 2.8E+02 0.006 34.4 17.5 69 684-755 244-312 (670)
99 PF05957 DUF883: Bacterial pro 64.9 33 0.00071 31.3 7.6 46 800-845 8-53 (94)
100 TIGR01843 type_I_hlyD type I s 64.8 2.2E+02 0.0047 31.2 20.6 26 701-726 202-227 (423)
101 KOG0979 Structural maintenance 64.6 4.3E+02 0.0093 34.5 24.4 49 645-693 673-721 (1072)
102 PF02601 Exonuc_VII_L: Exonucl 64.3 2.2E+02 0.0047 31.0 17.1 32 616-647 156-187 (319)
103 KOG1103 Predicted coiled-coil 64.1 2.9E+02 0.0063 32.3 16.8 70 591-664 119-192 (561)
104 TIGR02680 conserved hypothetic 64.0 4.7E+02 0.01 34.7 29.6 14 408-421 139-152 (1353)
105 PF01442 Apolipoprotein: Apoli 63.7 80 0.0017 30.2 10.3 31 862-892 107-137 (202)
106 smart00787 Spc7 Spc7 kinetocho 62.8 2.6E+02 0.0057 31.4 18.7 157 606-768 123-292 (312)
107 COG1579 Zn-ribbon protein, pos 62.7 2.4E+02 0.0052 30.9 22.1 65 662-733 87-155 (239)
108 PF14643 DUF4455: Domain of un 62.4 3.1E+02 0.0067 32.1 23.5 272 622-897 11-321 (473)
109 PF10498 IFT57: Intra-flagella 61.8 2E+02 0.0042 33.0 14.4 43 621-663 216-258 (359)
110 PF09731 Mitofilin: Mitochondr 61.3 3.3E+02 0.0073 32.1 20.7 116 616-734 320-441 (582)
111 KOG2391 Vacuolar sorting prote 60.8 30 0.00064 39.5 7.8 41 650-690 218-258 (365)
112 KOG4661 Hsp27-ERE-TATA-binding 60.5 36 0.00079 41.2 8.7 35 665-703 654-688 (940)
113 PF10168 Nup88: Nuclear pore c 60.0 4.2E+02 0.0092 33.0 17.7 29 678-706 611-640 (717)
114 KOG4809 Rab6 GTPase-interactin 59.3 3.8E+02 0.0083 32.9 16.5 142 609-758 420-567 (654)
115 PRK04863 mukB cell division pr 58.2 6.3E+02 0.014 34.3 27.2 55 699-757 373-427 (1486)
116 PRK02292 V-type ATP synthase s 58.0 2.1E+02 0.0047 28.8 15.3 52 655-711 61-112 (188)
117 PLN03188 kinesin-12 family pro 57.3 6.2E+02 0.013 33.9 27.1 100 706-838 1069-1170(1320)
118 KOG0971 Microtubule-associated 57.3 5.6E+02 0.012 33.4 26.7 101 621-734 316-428 (1243)
119 PRK03918 chromosome segregatio 57.2 4.5E+02 0.0097 32.3 35.6 18 634-651 202-219 (880)
120 KOG0982 Centrosomal protein Nu 56.6 4.2E+02 0.0091 31.8 18.2 20 568-587 245-264 (502)
121 KOG0982 Centrosomal protein Nu 54.4 4.5E+02 0.0098 31.5 21.7 37 701-737 355-391 (502)
122 PF12128 DUF3584: Protein of u 54.2 6.3E+02 0.014 33.1 35.3 27 760-787 552-578 (1201)
123 PF05262 Borrelia_P83: Borreli 54.1 4.6E+02 0.01 31.5 17.2 41 640-680 221-261 (489)
124 KOG2129 Uncharacterized conser 54.1 39 0.00084 39.7 7.4 62 715-795 185-246 (552)
125 smart00502 BBC B-Box C-termina 54.0 1.7E+02 0.0036 26.4 10.7 79 793-871 13-91 (127)
126 KOG0979 Structural maintenance 53.7 6.4E+02 0.014 33.0 20.1 150 579-731 169-333 (1072)
127 TIGR03545 conserved hypothetic 53.7 74 0.0016 38.2 9.9 52 663-714 208-259 (555)
128 PRK06569 F0F1 ATP synthase sub 53.3 1.1E+02 0.0023 31.5 9.6 50 636-687 66-116 (155)
129 PF07246 Phlebovirus_NSM: Phle 53.1 1.4E+02 0.003 33.2 11.0 39 716-754 198-236 (264)
130 COG2433 Uncharacterized conser 52.1 1.5E+02 0.0033 36.4 11.9 33 697-729 476-508 (652)
131 PRK10361 DNA recombination pro 52.0 5E+02 0.011 31.2 23.6 49 829-878 171-222 (475)
132 KOG2129 Uncharacterized conser 51.8 4.6E+02 0.0099 31.4 15.2 61 666-726 259-319 (552)
133 TIGR03545 conserved hypothetic 51.8 1.6E+02 0.0034 35.5 12.2 61 673-733 190-250 (555)
134 PF07464 ApoLp-III: Apolipopho 51.7 91 0.002 31.9 8.8 103 793-895 37-146 (155)
135 PRK00247 putative inner membra 50.3 1.4E+02 0.003 35.1 11.1 59 703-761 321-381 (429)
136 KOG0995 Centromere-associated 50.2 5.8E+02 0.012 31.5 31.5 172 583-770 228-400 (581)
137 KOG0241 Kinesin-like protein [ 50.0 1.2E+02 0.0026 39.2 10.9 77 675-771 365-445 (1714)
138 KOG4691 Uncharacterized conser 49.8 1.7E+02 0.0036 31.7 10.5 43 587-634 81-130 (227)
139 PF00521 DNA_topoisoIV: DNA gy 49.6 4.2E+02 0.0091 30.6 14.7 50 685-741 375-424 (426)
140 PF01991 vATP-synt_E: ATP synt 49.4 2.8E+02 0.006 27.6 14.8 80 611-694 13-92 (198)
141 PF14992 TMCO5: TMCO5 family 48.6 2.9E+02 0.0063 31.1 12.6 80 648-727 54-141 (280)
142 PF15642 Tox-ODYAM1: Toxin in 48.4 1.1E+02 0.0024 34.5 9.4 84 603-692 81-166 (385)
143 PF02841 GBP_C: Guanylate-bind 48.3 2.5E+02 0.0054 30.6 12.1 10 415-424 39-48 (297)
144 cd07671 F-BAR_PSTPIP1 The F-BA 48.2 2.9E+02 0.0064 29.7 12.4 96 657-763 22-118 (242)
145 PF05911 DUF869: Plant protein 48.0 6.9E+02 0.015 31.7 18.0 22 793-814 254-275 (769)
146 COG4942 Membrane-bound metallo 47.6 5.5E+02 0.012 30.5 24.0 62 686-747 169-244 (420)
147 PF07780 Spb1_C: Spb1 C-termin 47.1 1.2E+02 0.0027 32.6 9.4 95 522-645 63-164 (215)
148 TIGR00606 rad50 rad50. This fa 46.5 8.3E+02 0.018 32.2 34.6 24 669-692 794-817 (1311)
149 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.0 2.9E+02 0.0064 26.9 17.2 81 640-720 39-119 (132)
150 PF10146 zf-C4H2: Zinc finger- 45.9 4.3E+02 0.0093 28.7 14.9 88 654-759 12-99 (230)
151 TIGR02231 conserved hypothetic 45.8 1.5E+02 0.0032 34.6 10.6 40 703-742 128-167 (525)
152 PRK04778 septation ring format 45.5 6.1E+02 0.013 30.4 32.0 108 610-718 282-399 (569)
153 KOG0249 LAR-interacting protei 45.3 6E+02 0.013 32.3 15.5 56 678-733 195-250 (916)
154 PRK10361 DNA recombination pro 45.3 6.2E+02 0.013 30.4 19.7 42 702-743 147-188 (475)
155 TIGR03007 pepcterm_ChnLen poly 45.0 5.4E+02 0.012 29.6 21.9 38 676-713 256-293 (498)
156 PF14362 DUF4407: Domain of un 44.8 4.4E+02 0.0095 28.6 14.4 18 716-733 196-213 (301)
157 PRK02224 chromosome segregatio 44.7 7E+02 0.015 30.8 34.6 45 696-741 583-627 (880)
158 PF03962 Mnd1: Mnd1 family; I 44.2 3.4E+02 0.0073 28.3 11.8 49 707-762 108-156 (188)
159 KOG0288 WD40 repeat protein Ti 43.9 3.9E+02 0.0085 31.8 13.2 88 585-677 29-117 (459)
160 KOG2412 Nuclear-export-signal 43.8 7.1E+02 0.015 30.7 15.7 71 667-738 183-256 (591)
161 PF08647 BRE1: BRE1 E3 ubiquit 42.6 2.9E+02 0.0063 25.8 12.7 45 621-665 34-80 (96)
162 PF00769 ERM: Ezrin/radixin/mo 42.6 4.7E+02 0.01 28.3 15.1 74 641-731 45-118 (246)
163 KOG2010 Double stranded RNA bi 42.4 2.5E+02 0.0055 32.5 11.1 87 681-774 122-219 (405)
164 PF09731 Mitofilin: Mitochondr 41.3 6.7E+02 0.015 29.7 23.3 34 800-833 469-508 (582)
165 PF10473 CENP-F_leu_zip: Leuci 40.8 4.1E+02 0.0089 27.1 16.6 95 626-724 11-105 (140)
166 PLN03229 acetyl-coenzyme A car 40.6 4.4E+02 0.0094 33.4 13.6 20 701-720 648-667 (762)
167 KOG4429 Uncharacterized conser 40.2 4E+02 0.0087 30.6 12.2 35 621-659 50-90 (421)
168 PF15290 Syntaphilin: Golgi-lo 40.1 1E+02 0.0022 34.7 7.6 62 690-758 63-124 (305)
169 PF00038 Filament: Intermediat 39.7 5.1E+02 0.011 27.9 25.9 70 617-686 46-115 (312)
170 PF13870 DUF4201: Domain of un 39.6 4.1E+02 0.009 26.8 11.4 48 641-688 44-91 (177)
171 PF07352 Phage_Mu_Gam: Bacteri 39.6 1.4E+02 0.0031 29.5 8.0 98 705-809 6-103 (149)
172 PF11932 DUF3450: Protein of u 39.3 5E+02 0.011 27.6 16.0 114 599-713 24-142 (251)
173 KOG2751 Beclin-like protein [S 39.2 5.6E+02 0.012 30.7 13.5 121 565-693 103-233 (447)
174 PF10481 CENP-F_N: Cenp-F N-te 38.7 3.6E+02 0.0077 30.7 11.4 65 667-731 63-131 (307)
175 PRK10884 SH3 domain-containing 37.7 1.7E+02 0.0038 31.0 8.7 13 642-654 96-108 (206)
176 KOG0964 Structural maintenance 37.7 1.1E+03 0.024 31.2 26.5 128 593-721 665-804 (1200)
177 PF08826 DMPK_coil: DMPK coile 37.2 3E+02 0.0066 24.5 8.8 56 594-653 5-60 (61)
178 KOG0964 Structural maintenance 37.0 1.1E+03 0.025 31.1 33.3 18 489-506 108-125 (1200)
179 COG2433 Uncharacterized conser 36.9 4.8E+02 0.01 32.4 12.9 62 405-504 268-329 (652)
180 KOG2391 Vacuolar sorting prote 36.8 1.1E+02 0.0024 35.2 7.5 39 664-702 218-256 (365)
181 KOG1854 Mitochondrial inner me 36.2 8.2E+02 0.018 30.6 14.7 82 568-654 309-396 (657)
182 KOG0999 Microtubule-associated 36.2 9.5E+02 0.021 30.0 22.2 78 632-712 107-190 (772)
183 KOG2264 Exostosin EXT1L [Signa 36.2 1.7E+02 0.0036 36.1 9.0 27 702-728 114-140 (907)
184 COG4575 ElaB Uncharacterized c 35.9 1.1E+02 0.0025 29.8 6.4 63 822-884 11-73 (104)
185 PF06428 Sec2p: GDP/GTP exchan 35.6 90 0.0019 29.9 5.7 61 626-686 2-66 (100)
186 PF05701 WEMBL: Weak chloropla 35.4 8.4E+02 0.018 29.1 32.1 158 569-737 156-330 (522)
187 KOG0163 Myosin class VI heavy 35.3 8.1E+02 0.017 31.6 14.5 60 636-700 900-959 (1259)
188 PF06637 PV-1: PV-1 protein (P 35.1 5.1E+02 0.011 30.7 12.3 67 663-733 321-387 (442)
189 KOG0250 DNA repair protein RAD 34.8 1.2E+03 0.027 30.8 24.0 180 583-762 255-443 (1074)
190 cd07649 F-BAR_GAS7 The F-BAR ( 34.4 6.2E+02 0.013 27.3 19.8 41 593-634 65-105 (233)
191 PF08614 ATG16: Autophagy prot 34.3 2.7E+02 0.0057 28.7 9.2 18 731-748 155-172 (194)
192 PF12777 MT: Microtubule-bindi 34.1 2.7E+02 0.0059 31.1 10.0 55 670-724 25-79 (344)
193 KOG0243 Kinesin-like protein [ 34.0 1.2E+03 0.027 30.7 25.7 24 816-839 625-648 (1041)
194 PF04576 Zein-binding: Zein-bi 33.2 1.5E+02 0.0033 28.5 6.7 82 632-726 6-94 (94)
195 KOG1103 Predicted coiled-coil 33.0 2.3E+02 0.0049 33.1 9.1 50 609-658 209-264 (561)
196 PF00816 Histone_HNS: H-NS his 32.7 41 0.0009 30.6 2.9 53 739-791 12-81 (93)
197 COG0419 SbcC ATPase involved i 32.4 1.1E+03 0.025 29.7 32.8 32 675-706 278-309 (908)
198 KOG0612 Rho-associated, coiled 32.1 1.4E+03 0.031 30.8 24.4 57 635-691 497-556 (1317)
199 TIGR01843 type_I_hlyD type I s 32.1 7.2E+02 0.016 27.3 21.4 11 588-598 86-96 (423)
200 PF04094 DUF390: Protein of un 32.0 3.8E+02 0.0083 33.9 11.2 78 661-748 393-485 (828)
201 PRK03963 V-type ATP synthase s 32.0 5.6E+02 0.012 26.0 16.0 57 636-693 44-100 (198)
202 PF09537 DUF2383: Domain of un 31.9 2E+02 0.0042 26.5 7.1 98 793-898 7-106 (111)
203 KOG4403 Cell surface glycoprot 31.8 5.1E+02 0.011 31.2 11.7 61 787-850 354-421 (575)
204 PRK10404 hypothetical protein; 31.7 2.2E+02 0.0048 27.3 7.5 58 788-845 3-60 (101)
205 PF05335 DUF745: Protein of un 31.6 6.5E+02 0.014 26.7 12.8 93 667-759 60-152 (188)
206 KOG0978 E3 ubiquitin ligase in 31.2 1.2E+03 0.026 29.6 23.3 101 632-736 458-558 (698)
207 cd07651 F-BAR_PombeCdc15_like 30.8 6.5E+02 0.014 26.4 19.8 140 595-758 67-206 (236)
208 KOG1265 Phospholipase C [Lipid 30.7 4.8E+02 0.01 33.9 11.9 42 625-666 1114-1155(1189)
209 KOG1854 Mitochondrial inner me 30.6 1.2E+03 0.025 29.4 14.7 82 591-681 367-452 (657)
210 PRK15396 murein lipoprotein; P 30.5 1.8E+02 0.004 26.9 6.6 44 703-750 26-69 (78)
211 cd00187 TOP4c DNA Topoisomeras 30.2 8.8E+02 0.019 28.8 13.5 50 686-736 390-439 (445)
212 PF00210 Ferritin: Ferritin-li 30.2 4.2E+02 0.0092 24.1 10.0 130 704-843 1-140 (142)
213 PF06637 PV-1: PV-1 protein (P 30.0 6.3E+02 0.014 30.0 11.9 44 636-679 321-364 (442)
214 KOG3612 PHD Zn-finger protein 29.8 4.5E+02 0.0097 32.3 11.0 60 616-691 439-499 (588)
215 cd07683 F-BAR_srGAP1 The F-BAR 29.6 8.4E+02 0.018 27.3 14.8 119 616-736 21-147 (253)
216 PF04728 LPP: Lipoprotein leuc 29.3 2.5E+02 0.0054 24.9 6.8 44 703-750 4-47 (56)
217 KOG4661 Hsp27-ERE-TATA-binding 29.3 5.9E+02 0.013 31.7 11.9 28 571-598 597-624 (940)
218 PF13945 NST1: Salt tolerance 29.2 1.9E+02 0.0042 30.7 7.3 69 617-690 105-175 (190)
219 KOG1772 Vacuolar H+-ATPase V1 29.0 5.4E+02 0.012 25.6 9.7 51 641-693 37-87 (108)
220 TIGR02680 conserved hypothetic 29.0 1.6E+03 0.034 30.2 32.6 13 493-505 139-151 (1353)
221 PF10191 COG7: Golgi complex c 28.9 3.7E+02 0.0081 33.6 10.8 114 772-891 4-125 (766)
222 KOG2891 Surface glycoprotein [ 28.7 9.4E+02 0.02 27.6 16.9 37 699-735 390-426 (445)
223 KOG3809 Microtubule-binding pr 28.6 7.5E+02 0.016 29.9 12.4 67 642-708 510-580 (583)
224 KOG3540 Beta amyloid precursor 28.5 5.5E+02 0.012 31.3 11.4 112 596-738 275-410 (615)
225 COG1510 Predicted transcriptio 28.3 2.2E+02 0.0048 30.2 7.5 38 562-603 34-73 (177)
226 KOG0163 Myosin class VI heavy 27.7 1.5E+03 0.032 29.5 15.1 16 561-576 829-844 (1259)
227 PF07888 CALCOCO1: Calcium bin 27.5 1.2E+03 0.027 28.6 30.3 10 488-497 107-116 (546)
228 PTZ00491 major vault protein; 27.2 5.9E+02 0.013 32.7 11.9 35 638-673 744-778 (850)
229 PF15070 GOLGA2L5: Putative go 27.1 1.3E+03 0.028 28.6 19.9 9 725-733 249-257 (617)
230 PF08703 PLC-beta_C: PLC-beta 27.1 5.2E+02 0.011 27.5 10.0 45 625-669 91-135 (185)
231 PF12325 TMF_TATA_bd: TATA ele 27.0 6.3E+02 0.014 25.0 12.0 35 656-690 50-84 (120)
232 PLN02372 violaxanthin de-epoxi 26.9 6.6E+02 0.014 30.1 11.5 77 592-685 363-443 (455)
233 PRK10869 recombination and rep 26.9 1.2E+03 0.026 28.1 16.9 85 624-708 207-302 (553)
234 PRK11519 tyrosine kinase; Prov 26.5 1.3E+03 0.028 28.5 17.3 17 563-579 233-249 (719)
235 PF12126 DUF3583: Protein of u 26.3 9E+02 0.02 27.9 12.0 50 681-736 60-121 (324)
236 PF03961 DUF342: Protein of un 26.0 4.9E+02 0.011 30.1 10.5 37 654-690 372-408 (451)
237 KOG0962 DNA repair protein RAD 25.6 1.8E+03 0.04 30.0 17.1 124 617-744 303-440 (1294)
238 COG1340 Uncharacterized archae 25.5 1E+03 0.023 27.1 21.8 125 581-726 105-238 (294)
239 PF07798 DUF1640: Protein of u 25.4 7.4E+02 0.016 25.3 16.7 10 570-579 16-25 (177)
240 PF03938 OmpH: Outer membrane 25.4 6.3E+02 0.014 24.5 13.2 50 676-727 52-101 (158)
241 KOG0971 Microtubule-associated 25.3 1.7E+03 0.037 29.5 21.3 25 702-726 325-349 (1243)
242 smart00434 TOP4c DNA Topoisome 25.2 5E+02 0.011 30.5 10.4 45 684-729 398-442 (445)
243 PF04478 Mid2: Mid2 like cell 25.1 35 0.00075 35.1 1.1 23 91-113 49-71 (154)
244 TIGR01005 eps_transp_fam exopo 24.6 1.4E+03 0.03 28.1 19.1 136 586-726 240-400 (754)
245 PF07111 HCR: Alpha helical co 24.5 1.5E+03 0.034 28.7 20.2 158 575-740 125-313 (739)
246 PRK13182 racA polar chromosome 24.4 4.3E+02 0.0094 27.5 8.7 86 616-704 40-148 (175)
247 COG1318 Predicted transcriptio 24.3 7.7E+02 0.017 26.4 10.5 100 566-675 38-155 (182)
248 PRK06800 fliH flagellar assemb 24.3 5.6E+02 0.012 27.8 9.5 18 745-762 81-98 (228)
249 PF05917 DUF874: Helicobacter 24.2 4.3E+02 0.0094 30.3 9.2 44 689-732 170-213 (398)
250 TIGR01061 parC_Gpos DNA topois 24.0 1.1E+03 0.024 29.6 13.5 57 684-741 410-466 (738)
251 COG4877 Uncharacterized protei 23.7 77 0.0017 28.4 2.8 34 725-758 11-45 (63)
252 KOG2896 UV radiation resistanc 23.5 1.3E+03 0.027 27.3 13.7 103 657-759 52-170 (377)
253 KOG0994 Extracellular matrix g 23.4 2E+03 0.044 29.7 30.7 99 634-735 1470-1575(1758)
254 COG4768 Uncharacterized protei 23.3 4.9E+02 0.011 26.8 8.5 42 788-830 43-84 (139)
255 COG3264 Small-conductance mech 23.3 7.5E+02 0.016 31.8 11.8 18 748-765 202-219 (835)
256 PF15066 CAGE1: Cancer-associa 23.2 1.4E+03 0.031 27.9 14.1 112 638-749 311-433 (527)
257 PF09304 Cortex-I_coil: Cortex 23.2 7.5E+02 0.016 24.6 11.1 28 670-697 54-81 (107)
258 PF04624 Dec-1: Dec-1 repeat; 23.2 87 0.0019 24.2 2.6 14 736-749 9-22 (27)
259 PF03999 MAP65_ASE1: Microtubu 23.0 1.1E+03 0.024 28.6 13.0 91 581-676 262-362 (619)
260 PF07096 DUF1358: Protein of u 22.9 32 0.0007 34.3 0.4 41 80-121 15-55 (124)
261 PHA02940 hypothetical protein; 22.5 4.4E+02 0.0095 29.8 8.7 89 676-767 9-97 (315)
262 KOG0963 Transcription factor/C 22.4 1.6E+03 0.035 28.2 17.6 136 590-741 174-318 (629)
263 TIGR01000 bacteriocin_acc bact 22.3 1.2E+03 0.027 26.8 20.9 16 586-601 107-122 (457)
264 PRK10807 paraquat-inducible pr 22.2 6E+02 0.013 30.6 10.5 78 790-877 413-491 (547)
265 PTZ00421 coronin; Provisional 22.2 1.3E+02 0.0029 35.2 5.2 33 701-734 452-484 (493)
266 PRK05689 fliJ flagellar biosyn 22.2 7.3E+02 0.016 24.1 16.2 74 660-733 23-102 (147)
267 PF03148 Tektin: Tektin family 22.2 1.2E+03 0.027 26.7 23.7 73 775-852 194-266 (384)
268 TIGR00570 cdk7 CDK-activating 21.8 1.2E+03 0.027 26.6 13.6 23 581-603 111-133 (309)
269 TIGR03752 conj_TIGR03752 integ 21.7 5.8E+02 0.013 30.7 10.0 75 588-693 71-145 (472)
270 PRK05560 DNA gyrase subunit A; 21.7 1.4E+03 0.03 29.0 13.8 53 684-737 413-465 (805)
271 PF05622 HOOK: HOOK protein; 21.6 31 0.00067 41.8 0.0 16 587-602 456-471 (713)
272 PF05010 TACC: Transforming ac 21.6 1E+03 0.022 25.6 19.2 50 678-734 115-168 (207)
273 PF05837 CENP-H: Centromere pr 21.5 6.5E+02 0.014 24.0 8.7 30 716-745 58-99 (106)
274 cd07653 F-BAR_CIP4-like The F- 21.5 9.5E+02 0.021 25.1 16.7 27 617-643 22-48 (251)
275 TIGR01000 bacteriocin_acc bact 21.4 1.3E+03 0.028 26.7 24.1 35 563-601 74-108 (457)
276 PRK10132 hypothetical protein; 21.4 4.6E+02 0.0099 25.5 7.7 45 800-844 22-66 (108)
277 PRK10404 hypothetical protein; 21.4 7.4E+02 0.016 23.8 10.4 20 801-820 9-28 (101)
278 PF06098 Radial_spoke_3: Radia 21.3 1.2E+03 0.026 26.3 12.1 70 623-704 124-193 (291)
279 PF04568 IATP: Mitochondrial A 21.3 1.5E+02 0.0032 28.7 4.4 15 671-685 69-83 (100)
280 cd08779 Death_PIDD Death Domai 21.2 1.1E+02 0.0024 28.0 3.4 33 727-759 41-76 (86)
281 COG0419 SbcC ATPase involved i 21.2 1.7E+03 0.038 28.1 32.5 60 701-761 276-335 (908)
282 PRK01156 chromosome segregatio 21.1 1.7E+03 0.036 27.9 20.9 148 612-762 589-740 (895)
283 PF10267 Tmemb_cc2: Predicted 21.1 1E+03 0.022 28.0 11.7 67 679-759 242-309 (395)
284 KOG2264 Exostosin EXT1L [Signa 21.0 3.4E+02 0.0073 33.6 8.0 62 701-772 99-160 (907)
285 PF04576 Zein-binding: Zein-bi 20.7 4.5E+02 0.0097 25.5 7.4 50 705-758 2-56 (94)
286 PRK14011 prefoldin subunit alp 20.4 9.2E+02 0.02 24.6 12.4 127 702-843 3-133 (144)
287 KOG0239 Kinesin (KAR3 subfamil 20.1 1.8E+03 0.038 27.8 17.2 22 816-837 416-437 (670)
288 PF09177 Syntaxin-6_N: Syntaxi 20.0 7E+02 0.015 23.0 10.6 48 790-839 8-55 (97)
289 PF03980 Nnf1: Nnf1 ; InterPr 20.0 7.2E+02 0.016 23.2 12.5 45 614-659 6-50 (109)
No 1
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=98.94 E-value=7.7e-10 Score=86.74 Aligned_cols=44 Identities=27% Similarity=0.430 Sum_probs=31.6
Q ss_pred CccCCCCCCCCh-HHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHH
Q 002622 449 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV 503 (899)
Q Consensus 449 AF~DVppsDPyf-~yIQAAAEAGIIsGkLSG~~~~s~ddG~~tF~PD~PITRQELA 503 (899)
.|+||+..+|+| .+|+.|++.|||.|+.+ ++|+|+++|||+|||
T Consensus 1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~~-----------~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYAEAIQWLYQLGIISGYSD-----------GTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTTHHHHHHHHTTSS---TT-----------S---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCcccCCC-----------CeECCCCCcCHHHhC
Confidence 499999999966 99999999999999842 389999999999986
No 2
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=97.77 E-value=2.6e-05 Score=61.35 Aligned_cols=44 Identities=34% Similarity=0.392 Sum_probs=27.8
Q ss_pred cccccCCCCc-chHHHHHHHHhcccccceeeccCCCCccCCCCCCcHHHHH
Q 002622 527 GFIDIDKINP-DAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAA 576 (899)
Q Consensus 527 gFtDadkI~~-wA~~AVaadL~aGdqsIIr~vfG~tg~FqPnKPVTRAEAA 576 (899)
.|.|...+++ |+ .+|...... |||.+. ..+.|+|++++||+|+|
T Consensus 1 ~F~Dv~~~~~~~a-~~i~~~~~~---gi~~G~--~~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYA-EAIQWLYQL---GIISGY--SDGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTT-HHHHHHHHT---TSS-----TTS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHH-HHHHHHHHc---CCcccC--CCCeECCCCCcCHHHhC
Confidence 3899999988 77 888765554 465442 25789999999999997
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.38 E-value=0.34 Score=52.84 Aligned_cols=166 Identities=24% Similarity=0.255 Sum_probs=100.5
Q ss_pred ccCCCCCCcHHHHHHHHH--cccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002622 563 LFQPDKPVTNAQAAVALA--IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKM 640 (899)
Q Consensus 563 ~FqPnKPVTRAEAAAaL~--~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~ 640 (899)
.|+=-|..+|.+|-.+.| +-.+-+++.+.|.+--..=..+.+.. . +.+..=.+....+...
T Consensus 123 q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L------~-----------~~~~~l~~~~~~l~~~ 185 (325)
T PF08317_consen 123 QFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKL------D-----------KQLEQLDELLPKLRER 185 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------HHHHHHHHHHHHHHHH
Confidence 455666777888877665 66666777666654322211111111 0 0000111122223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHH
Q 002622 641 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 720 (899)
Q Consensus 641 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~ 720 (899)
+.....|+.+++....+ .=.|-.+.|..||.|+.++-..|...|-++..=+..++.+..+++.-.+.+.+
T Consensus 186 ~~~L~~e~~~Lk~~~~e----------~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~ 255 (325)
T PF08317_consen 186 KAELEEELENLKQLVEE----------IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE 255 (325)
T ss_pred HHHHHHHHHHHHHHHhh----------hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444432221 12377788888888888888888877777777777777777777666666666
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002622 721 LQYELEVERKALSMARAWAEDEAKRAREQAKALEG 755 (899)
Q Consensus 721 ~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEe 755 (899)
++.++..=.+-+.--|.|-..|..+-+++-+.||.
T Consensus 256 l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 256 LLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 66666555555556789999999999999999997
No 4
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=2.2 Score=53.62 Aligned_cols=251 Identities=20% Similarity=0.250 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcce
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 695 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv 695 (899)
+.+| +-..++++....-+-.++.-....-.+++..+ ++....+++-+.++.. +......|-+ ...|..=++
T Consensus 226 E~~i-~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k----~e~~ki~re~~~~Dk~---i~~ke~~l~e-rp~li~~ke 296 (1141)
T KOG0018|consen 226 EACI-EKANDELSRLNAEIPKLKERMDKKEREIRVRK----KERGKIRRELQKVDKK---ISEKEEKLAE-RPELIKVKE 296 (1141)
T ss_pred hhhH-hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHhh-hhHHhhcch
Confidence 4444 24445555555544444444444333333333 4445566666666643 2333334444 456788888
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCC
Q 002622 696 EISYEKERINMLRKEAENENQEIARLQYELEVER---KALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKD 772 (899)
Q Consensus 696 ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek---kAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~ 772 (899)
.+...+.||.+..++++.........+.+++..+ +|+.-++.-.|+|-++.+. .| |-++...++
T Consensus 297 ~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q----------~r---g~~lnl~d~ 363 (1141)
T KOG0018|consen 297 NASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ----------ER---GSELNLKDD 363 (1141)
T ss_pred hhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hc---cccCCcchH
Confidence 9999999999999999999999999998877654 4555555555555433221 11 111111111
Q ss_pred -------ccccccc-------chhhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 002622 773 -------LREESDA-------AVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKW 838 (899)
Q Consensus 773 -------~~~~~~~-------~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~ 838 (899)
|.+++.. ..-----.++-.++.+.+|-..|-.+++.+...| .++..-++.+..+|-++...+.+.
T Consensus 364 ~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sv-er~~~~~~~L~~~i~s~~~~~~e~ 442 (1141)
T KOG0018|consen 364 QVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESV-ERLDKRRNKLAAKITSLSRSYEEL 442 (1141)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 1111223445566666777777777777777766 333444444444444444443333
Q ss_pred HHHHhhHH---------------------HHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccch-hhhhhhhhh
Q 002622 839 ASKASMRA---------------------AELKDATILKAKGSVQELQQSTAEFRSNLTEGAK-RVAGDCREG 889 (899)
Q Consensus 839 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-r~~~~c~~g 889 (899)
......-. +.+.|+.+-...++=+...+.+.+.=-...-|.+ ||.|.|+--
T Consensus 443 ~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 443 KHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred hhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhccccc
Confidence 32222111 3334444434333334444444444445556777 899999753
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.4 Score=53.82 Aligned_cols=87 Identities=26% Similarity=0.344 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002622 642 EEARQELERLRA---------------EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 706 (899)
Q Consensus 642 eea~~eLe~~r~---------------ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 706 (899)
|.|+.|||+.|. .||++-+.++|+|- ..=.+.|.-|...+....++|.--|+.|-.-|..|+.
T Consensus 399 Eaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~--~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~ 476 (1118)
T KOG1029|consen 399 EAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKK--KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence 456667766553 23444444444442 3334456666667777777787888888888888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 002622 707 LRKEAENENQEIARLQYELEVERK 730 (899)
Q Consensus 707 L~~~~e~~~q~i~~~k~~LE~Ekk 730 (899)
+.+.++...-+|.+||..|.-=-+
T Consensus 477 ~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777654333
No 6
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.31 E-value=8.7 Score=45.70 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=72.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 002622 631 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 710 (899)
Q Consensus 631 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~ 710 (899)
.++...+++.++++..++++++.+....-..++.+|..++.++..|..-+.+....+-.++++..=...=..-|+.++..
T Consensus 229 ~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q 308 (650)
T TIGR03185 229 AQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQ 308 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHH
Confidence 34466677777777888888888777788899999999999999999999999999999999988777777888888888
Q ss_pred HHHHHHHH
Q 002622 711 AENENQEI 718 (899)
Q Consensus 711 ~e~~~q~i 718 (899)
++.+++..
T Consensus 309 ~~~e~~~~ 316 (650)
T TIGR03185 309 LQKEEQSQ 316 (650)
T ss_pred HHHHHHHH
Confidence 88776433
No 7
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.13 E-value=0.82 Score=50.38 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=101.4
Q ss_pred ccCCCCCCcHHHHHHHHH--cccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002622 563 LFQPDKPVTNAQAAVALA--IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKM 640 (899)
Q Consensus 563 ~FqPnKPVTRAEAAAaL~--~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~ 640 (899)
.|+=-|.-+|.+|-.+.| |-..-+++-+.|.+-=.. |..+.......+.+
T Consensus 118 Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~----------------------------l~~D~~~L~~~~~~ 169 (312)
T smart00787 118 QFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEG----------------------------LKEDYKLLMKELEL 169 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHH
Confidence 577778889999988876 666666666665542111 11122222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHH
Q 002622 641 AEEARQELERLRAEREVDKIALMKERAAI-ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 719 (899)
Q Consensus 641 ~eea~~eLe~~r~ere~e~~~llKerAa~-e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~ 719 (899)
+..++.+|.+....=..+...|.+....| .|--..|..||.++.++.+.+...+-++..=++.++++...++...+...
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333 45677888888888888888777777666666666666666666666665
Q ss_pred HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002622 720 RLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 755 (899)
Q Consensus 720 ~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEe 755 (899)
+++.++-.-.+=+-.-|.|-..|+.+=+++-+.||.
T Consensus 250 e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 250 ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 555555444444445689999999999999999987
No 8
>PRK00106 hypothetical protein; Provisional
Probab=94.86 E-value=3 Score=49.23 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.0
Q ss_pred cCcEEEEcCCc
Q 002622 763 QGIKVVVDKDL 773 (899)
Q Consensus 763 ~gikv~vd~~~ 773 (899)
-|+.++||+.-
T Consensus 255 tGvdliiddtp 265 (535)
T PRK00106 255 TGIDVIIDDTP 265 (535)
T ss_pred hCceEEEcCCC
Confidence 37888888654
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=8.7 Score=47.47 Aligned_cols=85 Identities=29% Similarity=0.350 Sum_probs=53.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002622 627 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 706 (899)
Q Consensus 627 l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 706 (899)
...||++..++||.+|. ..|||+.|.|.++ |++-++|+-++.|-+-|. +--|+-|++.
T Consensus 363 qEqErk~qlElekqLer-QReiE~qrEEerk------keie~rEaar~ElEkqRq---------------lewErar~qe 420 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLER-QREIERQREEERK------KEIERREAAREELEKQRQ---------------LEWERARRQE 420 (1118)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 34567777788887765 3467776664333 344444555554444432 2357888899
Q ss_pred HHHHHHHHHHHHHHhhH---HHHHHHHHHH
Q 002622 707 LRKEAENENQEIARLQY---ELEVERKALS 733 (899)
Q Consensus 707 L~~~~e~~~q~i~~~k~---~LE~EkkAL~ 733 (899)
|+.+.+.+++.|..++. .|+.|-++|.
T Consensus 421 m~~Qk~reqe~iv~~nak~~ql~~eletLn 450 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVYLNAKKKQLQQELETLN 450 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887543 4566666653
No 10
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.42 E-value=9.3 Score=44.25 Aligned_cols=111 Identities=22% Similarity=0.155 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHH
Q 002622 634 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 713 (899)
Q Consensus 634 ~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~ 713 (899)
....-.+|.+...++.+.-..-.+....|-..|+.|+.|++.|..+..|..++.++|.....| =+..+.+|.++++.
T Consensus 145 ~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E---~kk~~~~l~~~l~~ 221 (420)
T COG4942 145 SVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE---RKKTLAQLNSELSA 221 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344555677777777777777788888888999999999999999999999999988765432 24455666677766
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002622 714 ENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAK 751 (899)
Q Consensus 714 ~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~ 751 (899)
+++.+..|+ +...+|.-.=+=+|.+|.++||.+.
T Consensus 222 ~q~~l~eL~----~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 222 DQKKLEELR----ANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655444 3334444333334444444444443
No 11
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.27 E-value=17 Score=46.78 Aligned_cols=93 Identities=24% Similarity=0.303 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHH----------HHhhhc--ceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-
Q 002622 667 AAIESEMEILSKLRREVEEQL----------ESLMSN--KVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS- 733 (899)
Q Consensus 667 Aa~e~e~q~L~~Lr~EVde~~----------q~L~s~--kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~- 733 (899)
-.|+.-+++|.+|-.+|-+.| +.||.+ .+++..+-+.|+.|-.+|...-..|.++..+|-.=|--+.
T Consensus 1464 ~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~r 1543 (1758)
T KOG0994|consen 1464 SQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIAR 1543 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHH
Confidence 346777778888877776543 344433 4567778888888888888877777766666543332222
Q ss_pred ---------HHHHhHHHHHHHHHHHHHHHHHHhHH
Q 002622 734 ---------MARAWAEDEAKRAREQAKALEGARDR 759 (899)
Q Consensus 734 ---------m~RsWaEdEA~r~~e~A~vLEea~~r 759 (899)
-+|+||||+-..+..--.+||+|-+-
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~A 1578 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKGQAEDVVEALEEADVA 1578 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677777776666666677776543
No 12
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.11 E-value=9.9 Score=46.35 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHH-HhhHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 002622 587 AVNEELQRIEAES-AAENAVSEHSALVAEVE--KEINESFEKELSMEREKIDVVEKMAEEARQELERLR---AEREVDKI 660 (899)
Q Consensus 587 ~v~eEL~RlEAE~-~a~~av~~~~~l~~~~~--~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r---~ere~e~~ 660 (899)
-+..||.||.+|- .+|+.+.+ |-.++. ---.+....+|..=|..-+.+|.-+.++..-....| ..=|+-+.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~E---LRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQE---LRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH---HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888884 33433322 111100 000122333333334444444444333333333333 22344455
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHH
Q 002622 661 ALMKERAAIESEMEILSKLRREVEE 685 (899)
Q Consensus 661 ~llKerAa~e~e~q~L~~Lr~EVde 685 (899)
+..+-|+.+|.|-....+=|.+-++
T Consensus 499 eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555666666665555554444333
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.92 E-value=13 Score=45.38 Aligned_cols=89 Identities=29% Similarity=0.296 Sum_probs=49.9
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------------------
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA------------------------ 731 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkA------------------------ 731 (899)
|..||.|.|++--+|..-.-.--.||+.|+-|.+.+..++..-..+...|..||+|
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e 541 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAE 541 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHH
Confidence 44444444444434443333344455555555555555555555555555555544
Q ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 002622 732 -LSMARAWAEDEAKRAREQAKALEGARDRWERQG 764 (899)
Q Consensus 732 -L~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~g 764 (899)
+..-|.=.|.|.++-|..-+..||.-+.|+..+
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567777777777777777777777655
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.91 E-value=26 Score=44.94 Aligned_cols=186 Identities=20% Similarity=0.249 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHhHHHHHHHHHHhh
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAA----IESEMEILSKLRREVEEQLESLM 691 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa----~e~e~q~L~~Lr~EVde~~q~L~ 691 (899)
+.+.++.|......-..++..+.+..+.+..+.+..+.+-+++...=|+++-. |..=++-+..|. ..++...
T Consensus 716 ~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~----~~l~~ie 791 (1201)
T PF12128_consen 716 RNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLE----KELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHH
Confidence 45666777766666667777777777777777776666666666655555532 222222222222 2333333
Q ss_pred hcceehh-hHH-------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 002622 692 SNKVEIS-YEK-------------ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGAR 757 (899)
Q Consensus 692 s~kvei~-~Ek-------------~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~ 757 (899)
..+-.|. |++ .+..+|..++..-.+++.+++..|+.-++.+.-.|.=.+.+.+...++..-|++-.
T Consensus 792 ~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l 871 (1201)
T PF12128_consen 792 ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQL 871 (1201)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221 111 12333444444445555556666666666666666666666666666666666655
Q ss_pred HHHhhcCcEEEEcCCcccccccchhhhhcccccchHHHHHhHHHHHHHHHHhhhhcc
Q 002622 758 DRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS 814 (899)
Q Consensus 758 ~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~ 814 (899)
++=+....++ .++ ...|....-...+.+.+...++++..++.+..+++
T Consensus 872 ~~l~~~~~~l---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 919 (1201)
T PF12128_consen 872 RRLRDLLEKL---AEL------SEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELK 919 (1201)
T ss_pred HHHHHHHhhh---hhc------CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433333333 111 12233333337788888888888888887777776
No 15
>PRK00106 hypothetical protein; Provisional
Probab=93.58 E-value=9.1 Score=45.44 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHH-HHHHHHHhHHHh
Q 002622 724 ELEVERKALSMARAWAEDEAKR-AREQ-AKALEGARDRWE 761 (899)
Q Consensus 724 ~LE~EkkAL~m~RsWaEdEA~r-~~e~-A~vLEea~~rW~ 761 (899)
+-|+..++-.++|.. |+||+. +... -++|-.|-+|..
T Consensus 179 ~~~~~~~~~~~i~~~-e~~a~~~a~~~a~~ii~~aiqr~a 217 (535)
T PRK00106 179 ENKLTHEIATRIREA-EREVKDRSDKMAKDLLAQAMQRLA 217 (535)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666654 334433 2222 356788888865
No 16
>PRK12704 phosphodiesterase; Provisional
Probab=93.34 E-value=13 Score=43.76 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHH-HHH-HHHHHHHhHHHh
Q 002622 722 QYELEVERKALSMARAWAEDEAKRA-REQ-AKALEGARDRWE 761 (899)
Q Consensus 722 k~~LE~EkkAL~m~RsWaEdEA~r~-~e~-A~vLEea~~rW~ 761 (899)
+-+-|+.+++-.+.|. .|+||+.. ... -++|-.|-+|..
T Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~i~~~a~qr~a 202 (520)
T PRK12704 162 KVEEEARHEAAVLIKE-IEEEAKEEADKKAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444556667777776 34455432 222 346777878743
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.16 E-value=35 Score=43.55 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=16.8
Q ss_pred CCcCCCCCccHHHHHHHHHHH
Q 002622 404 ADVKPGDLCIRREYARWLVSA 424 (899)
Q Consensus 404 ~~F~Pn~pITRAEFARwLVRA 424 (899)
.+|-=+..|+..++...|..+
T Consensus 111 ~Y~INg~~~~~~dI~~l~~~~ 131 (1163)
T COG1196 111 EYYINGEKVRLKDIQDLLADS 131 (1163)
T ss_pred EEEECCcEeeHHHHHHHHHhc
Confidence 467778899999998887664
No 18
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.82 E-value=23 Score=41.72 Aligned_cols=96 Identities=29% Similarity=0.327 Sum_probs=42.4
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 002622 662 LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 741 (899)
Q Consensus 662 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEd 741 (899)
|-+.+..++.+.+.|.....+++++.+.+....-+...+-+++..|. ..+-.+.+--+-+-++..++-.|.|-. |+
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt---~~eak~~l~~~~~~~~~~~~~~~~~~~-~~ 174 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLT---QEEAKEILLEEVEEEARHEAAKLIKEI-EE 174 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33334445555555555555555554444332222222222222221 122222223334445566666777654 33
Q ss_pred HHHH-HHHH-HHHHHHHhHHHh
Q 002622 742 EAKR-AREQ-AKALEGARDRWE 761 (899)
Q Consensus 742 EA~r-~~e~-A~vLEea~~rW~ 761 (899)
||+. +... -++|-.|-+|..
T Consensus 175 ~~~~~a~~~a~~i~~~aiqr~a 196 (514)
T TIGR03319 175 EAKEEADKKAKEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3332 2222 356778888743
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.13 E-value=74 Score=43.36 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 002622 680 RREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 759 (899)
Q Consensus 680 r~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~r 759 (899)
=.+++.+...|+..+...+.|-..+.+.+.+.+.+...+++.++.++.+.+=| +.=+++|.|+....+..|-.+.+-
T Consensus 1254 ~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle~e~r~k~~l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1254 LDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLEEETREKSALENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555567888999999999999999999999999999999999886655 888999999999988888776654
No 20
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.89 E-value=22 Score=37.04 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=16.6
Q ss_pred ccchhhhhcccccch-HHHHHhHHHHHHHHHHhh
Q 002622 778 DAAVMWVNAGKQFSV-DQTVSRAQSLVDKLKAMA 810 (899)
Q Consensus 778 ~~~~~w~~~~~~~~~-~~~~~ra~~l~~klk~m~ 810 (899)
..|+.+.|...-... +..|.-|=..+-.|=.|.
T Consensus 178 I~~~~lp~~~~~~~~~~~~isaALgyvahlv~ll 211 (302)
T PF10186_consen 178 ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLL 211 (302)
T ss_pred ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 467666665433332 355666644444444433
No 21
>PRK11637 AmiB activator; Provisional
Probab=90.74 E-value=34 Score=38.77 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHH
Q 002622 661 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 703 (899)
Q Consensus 661 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~ 703 (899)
.|-+.+..++.+++.|..-+.++..++..+...+.++..++..
T Consensus 174 ~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 174 ELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444
No 22
>PRK12704 phosphodiesterase; Provisional
Probab=90.60 E-value=29 Score=40.97 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=24.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 002622 631 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 686 (899)
Q Consensus 631 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~ 686 (899)
+.+...-|+.+..-...|++....=++....|-+.+..++.+.+.|..++.+++++
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~ 136 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444444444444333333344444444444444444444444433
No 23
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=90.22 E-value=35 Score=40.35 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=39.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHH-------HHHHhhhcceehhhHHHH
Q 002622 631 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE-------QLESLMSNKVEISYEKER 703 (899)
Q Consensus 631 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde-------~~q~L~s~kvei~~Ek~~ 703 (899)
+.+...-|+.+..-...|++-...=++....|-+.+..++...+.|-.+..|.++ .|++++. ++.|+-+
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~----lt~~eak 150 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG----LTQEEAK 150 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHH
Confidence 4444444555544444455444443344444445555555555555555555444 4555443 3344433
Q ss_pred ---HHHHHHHHHHHHHH
Q 002622 704 ---INMLRKEAENENQE 717 (899)
Q Consensus 704 ---l~kL~~~~e~~~q~ 717 (899)
|+++..++..+-..
T Consensus 151 ~~l~~~~~~~~~~~~~~ 167 (514)
T TIGR03319 151 EILLEEVEEEARHEAAK 167 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555554444333
No 24
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.06 E-value=48 Score=40.69 Aligned_cols=251 Identities=16% Similarity=0.191 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHhh-hh
Q 002622 608 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKI--------------------ALMK-ER 666 (899)
Q Consensus 608 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~--------------------~llK-er 666 (899)
+..+++++++.+..++..++....+....+.+-...+..||..+-...-.... .+|- =|
T Consensus 37 ~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr 116 (660)
T KOG4302|consen 37 RDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLR 116 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHH
Confidence 44577777777777777666666666666666666666666655443211111 0000 12
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhc----ceehhhHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 002622 667 AAIESEMEILSKLRREVEEQLESLMSN----KVEISYEKE----RINMLRKEAENENQEIARLQYELEVERKALSMARAW 738 (899)
Q Consensus 667 Aa~e~e~q~L~~Lr~EVde~~q~L~s~----kvei~~Ek~----~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsW 738 (899)
+.-+.-+..+..+.++++.+.+.|... ...+.+|.+ +|+.|+..+ .+|+-||
T Consensus 117 ~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L-----------~~L~~ek--------- 176 (660)
T KOG4302|consen 117 KQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHL-----------NELQKEK--------- 176 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHH-----------HHHHHHH---------
Confidence 333334444555555555555555544 111222211 111111111 1222222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCcEEE-----EcCCcccccccchhhhhcccccchHHHHHhHHHHHHHHHHhhhhc
Q 002622 739 AEDEAKRAREQAKALEGARDRWERQGIKVV-----VDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDV 813 (899)
Q Consensus 739 aEdEA~r~~e~A~vLEea~~rW~~~gikv~-----vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~ 813 (899)
+.|-+.--...++...-|.--|++.- |..+|.+... .-...-.++|+.|-+.++.+|+.+..+-
T Consensus 177 ----~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~-------~~~~~is~etl~~L~~~v~~l~~~k~qr 245 (660)
T KOG4302|consen 177 ----SDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDG-------EQSRSISDETLDRLDKMVKKLKEEKKQR 245 (660)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccC-------cccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334445566677888887654 2333333221 0015566889999999998888876543
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhh
Q 002622 814 SGKSKEIINTIIHKILLFISNLKKWASKASMRA----AELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREG 889 (899)
Q Consensus 814 ~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~g 889 (899)
.+.|..+..+|+.|-..|.-=..+..... .|+-+. .+-....|..++.-|.-...-=...-|.|+.+||..
T Consensus 246 ----~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~-~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~E 320 (660)
T KOG4302|consen 246 ----LQKLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEP-NSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSE 320 (660)
T ss_pred ----HHHHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhcc-ccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34466667777777666653333322221 122222 222334455555555444444455568888888888
Q ss_pred Hhhhh
Q 002622 890 VEKLT 894 (899)
Q Consensus 890 v~k~~ 894 (899)
++.|-
T Consensus 321 leel~ 325 (660)
T KOG4302|consen 321 LEELW 325 (660)
T ss_pred HHHHH
Confidence 77664
No 25
>PTZ00121 MAEBL; Provisional
Probab=89.32 E-value=45 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=14.0
Q ss_pred ccccccccCCCCCCCCCccccccc
Q 002622 43 PVHLRCFGPSAGRRRGCSLSIRSE 66 (899)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~ 66 (899)
.-.-+||-+ -....|.-||.-|+
T Consensus 290 ~n~~rCf~p-~Kke~gk~wtY~sS 312 (2084)
T PTZ00121 290 QGFERCFLP-MKKEAGKEWTYASS 312 (2084)
T ss_pred cCCcceeee-ecccccCCceeeec
Confidence 344567766 45556777876544
No 26
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.28 E-value=59 Score=39.35 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002622 701 KERINMLRKEAENENQEIARLQYELEVERK 730 (899)
Q Consensus 701 k~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 730 (899)
..+|.||..-++...+.+..|+...|.=|.
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777777766665554333
No 27
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.07 E-value=67 Score=39.68 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=12.1
Q ss_pred CcCCCCCccHHHHHHHHHH
Q 002622 405 DVKPGDLCIRREYARWLVS 423 (899)
Q Consensus 405 ~F~Pn~pITRAEFARwLVR 423 (899)
+|--+.+||+.++...|-.
T Consensus 110 ~~~n~~~~~~~~~~~~l~~ 128 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHDFLAA 128 (1164)
T ss_pred EEECCccccHHHHHHHHHH
Confidence 3445667888887665544
No 28
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.28 E-value=84 Score=39.86 Aligned_cols=267 Identities=22% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHH--HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002622 593 QRIE--AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIE 670 (899)
Q Consensus 593 ~RlE--AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e 670 (899)
+|+| +|..+++ +..|.+|+.+. +||. +++..++.-+++|++...+.-.-||++..++.....-+---+-.++
T Consensus 424 ~ry~klkek~t~l-~~~h~~lL~K~-~di~----kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le 497 (980)
T KOG0980|consen 424 NRYEKLKEKYTEL-RQEHADLLRKY-DDIQ----KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALE 497 (980)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------hHHHH
Q 002622 671 SEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARA--------WAEDE 742 (899)
Q Consensus 671 ~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~Rs--------WaEdE 742 (899)
+=++.|..|-.|++++-..|-+-.-....+...|+.++++--..-.++..-.-++++ +++...|+ =.-+|
T Consensus 498 ~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~--~~~e~e~si~ql~l~~~~~~e 575 (980)
T KOG0980|consen 498 SLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREA--LRLEAERSINQLELDSSASTE 575 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHhhHHHhhcccccchH
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCcEEEEcCCcccccccchhhhhcccccchHHHHHhHHHHHHHHHHhhhhcc--cchHHH
Q 002622 743 AKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS--GKSKEI 820 (899)
Q Consensus 743 A~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~--~~~~~~ 820 (899)
|--.|-.-..=--..+-=...||.+.++.=...+..++ | +-..+-+-.+.++++..+-...+.+-.+ -....-
T Consensus 576 a~~tQ~~~~~~~~il~~~~~~~~q~lq~al~~ld~P~~--~---~~~~~p~~Llst~~~~s~n~~~~e~~~~~yla~~~d 650 (980)
T KOG0980|consen 576 AGITQLQDDLNDPILDGSLASGIQALQNALYQLDSPLH--W---RCLTSPDFLLSTAENASVNATQFETSFNNYLADGDD 650 (980)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCcc--c---CcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHhhhhhhcc
Q 002622 821 INTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFK 898 (899)
Q Consensus 821 ~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k~~~rfk 898 (899)
++.+|+-|..|-..+-..+.++..-+.. +..||+-||.+-||. +++.+++|+
T Consensus 651 ~s~~i~~v~~fs~~~~~~~~na~a~~~t-------------------------a~~e~~d~v~~l~k~-~~~~a~~~~ 702 (980)
T KOG0980|consen 651 ASDLIHCVTLFSHLISTTINNAKATAYT-------------------------ASPEGSDRVNDLCKK-CGREALAFL 702 (980)
T ss_pred hhhHhhHHHHHHHHHHHHHhcchhheec-------------------------cCCchhHHHHHHHHH-HHHHHHHHH
No 29
>PTZ00121 MAEBL; Provisional
Probab=88.27 E-value=68 Score=42.73 Aligned_cols=34 Identities=32% Similarity=0.365 Sum_probs=19.5
Q ss_pred cHHHHHHHHHcccchhhHHHHHHHHHHHHHhhHH
Q 002622 571 TNAQAAVALAIGEASDAVNEELQRIEAESAAENA 604 (899)
Q Consensus 571 TRAEAAAaL~~G~~~e~v~eEL~RlEAE~~a~~a 604 (899)
.|+.-|.--.+|...++-.+|--|.|+++.+..+
T Consensus 1087 ~~~~~~~~~~~~~~e~~r~~et~r~ee~r~~ee~ 1120 (2084)
T PTZ00121 1087 NRADEATEEAFGKAEEAKKTETGKAEEARKAEEA 1120 (2084)
T ss_pred ccchhhhHHHhhhHHHhhhhhhhhhHHHHHHHHH
Confidence 3455555555677766666666666655544443
No 30
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.21 E-value=90 Score=40.16 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=53.2
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhhhhHH
Q 002622 792 VDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNL------KKWASKASMRAAELKDATILKAKGSVQ 862 (899)
Q Consensus 792 ~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (899)
+-++=+|-+.|-+|...|-..|+-+.-.+|++.=.++..+.+.+ |..+.+.....++.+-.+..||+..+.
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN 1036 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVN 1036 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666778888888888899999999998877777665544 456667777778888888888876653
No 31
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.00 E-value=4.8 Score=49.26 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehh
Q 002622 641 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 698 (899)
Q Consensus 641 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~ 698 (899)
.+.|+.-+...+.+-++-+..|-.+|..++.+++.+.+++.|++++.++|-.+.-++-
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555555566566666555555555544444333
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.68 E-value=1e+02 Score=40.14 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=5.6
Q ss_pred HHhhhhhhhhhh
Q 002622 106 VLFAGLTFAALS 117 (899)
Q Consensus 106 ~l~~gl~~aa~s 117 (899)
-||=+|+||-+.
T Consensus 43 Til~ai~~al~G 54 (1311)
T TIGR00606 43 TIIECLKYICTG 54 (1311)
T ss_pred HHHHHHHHHhcC
Confidence 344445555443
No 33
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.62 E-value=74 Score=38.52 Aligned_cols=66 Identities=26% Similarity=0.376 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Q 002622 620 NESFEKELSMEREKIDVVEKMAEEARQ-----------------ELERLRAEREVDKIALMKERAAIESEMEILSKLRRE 682 (899)
Q Consensus 620 ~~~f~~el~~Er~~~~~vek~~eea~~-----------------eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~E 682 (899)
++.|+++|++=.+-++++|--.+..+. +++++..||++-.-++.|=.-+++..++.+-.++.|
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455777766555444444443333332 455666666666666666666666666666555554
Q ss_pred HHH
Q 002622 683 VEE 685 (899)
Q Consensus 683 Vde 685 (899)
+.+
T Consensus 369 ~~~ 371 (581)
T KOG0995|consen 369 IED 371 (581)
T ss_pred HHH
Confidence 443
No 34
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=87.14 E-value=40 Score=34.90 Aligned_cols=88 Identities=25% Similarity=0.334 Sum_probs=40.9
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002622 594 RIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM 673 (899)
Q Consensus 594 RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~ 673 (899)
+.||++.-..+...--+- ...++.-++.++...|......|+-+..--..|++....=++....|-+.+..+..++
T Consensus 44 ~~eAe~~~ke~~~eakee----~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~ 119 (201)
T PF12072_consen 44 EREAEAIKKEAELEAKEE----AQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRK 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666555554431111 1234445556665555555555555544444444444433333334444444444444
Q ss_pred HHHHHhHHHHHH
Q 002622 674 EILSKLRREVEE 685 (899)
Q Consensus 674 q~L~~Lr~EVde 685 (899)
+.|-.++.+++.
T Consensus 120 ~~l~~~~~e~~~ 131 (201)
T PF12072_consen 120 EELEEREEELEE 131 (201)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 35
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=87.01 E-value=33 Score=39.77 Aligned_cols=58 Identities=28% Similarity=0.347 Sum_probs=42.2
Q ss_pred ccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002622 582 GEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAE 642 (899)
Q Consensus 582 G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~e 642 (899)
|...++|.+||..|- |-++.....-| .|.++.++|++ |.-+-|.+||=|-+.+|..+-
T Consensus 259 ~~~l~aileeL~eIk-~~q~~Leesye-~Lke~~krdy~-fi~etLQEERyR~erLEEqLN 316 (455)
T KOG3850|consen 259 GAALDAILEELREIK-ETQALLEESYE-RLKEQIKRDYK-FIAETLQEERYRYERLEEQLN 316 (455)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 334789999998875 44555544433 58888899995 888889999988877776653
No 36
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.41 E-value=31 Score=42.60 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=50.5
Q ss_pred HHHHHHHHH-HHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HhhhhhHHH---------------------
Q 002622 620 NESFEKELS-MEREKIDVVEKMAE----EARQELERLRAEREVDKIA---LMKERAAIE--------------------- 670 (899)
Q Consensus 620 ~~~f~~el~-~Er~~~~~vek~~e----ea~~eLe~~r~ere~e~~~---llKerAa~e--------------------- 670 (899)
+++|+-||. .||....++|++-+ +.|.|-.++|.|+|++... .||.+--..
T Consensus 836 kr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~e 915 (1187)
T KOG0579|consen 836 KRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKE 915 (1187)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455666653 57888788887654 4566777889999988753 344332222
Q ss_pred -----H---HHHHHHHhHHHHHHHHHHhhhcce
Q 002622 671 -----S---EMEILSKLRREVEEQLESLMSNKV 695 (899)
Q Consensus 671 -----~---e~q~L~~Lr~EVde~~q~L~s~kv 695 (899)
+ +++.+.+++.++|.||++++...-
T Consensus 916 q~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k 948 (1187)
T KOG0579|consen 916 QIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHK 948 (1187)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 246678888889999998886543
No 37
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.25 E-value=46 Score=34.71 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 002622 748 EQAKALEGA 756 (899)
Q Consensus 748 e~A~vLEea 756 (899)
.|...+.++
T Consensus 145 ~r~~l~~~l 153 (302)
T PF10186_consen 145 RRRQLIQEL 153 (302)
T ss_pred HHHHHHHHH
Confidence 344444443
No 38
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.18 E-value=41 Score=36.13 Aligned_cols=74 Identities=26% Similarity=0.226 Sum_probs=42.3
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002622 657 VDKIALMKE-RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 730 (899)
Q Consensus 657 ~e~~~llKe-rAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 730 (899)
.+.+.+|-+ +--.+.+.+.|-.-+.+.+++.++|......-..|+..|+.-..+++.+-..+.......+.|.+
T Consensus 32 e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~ 106 (246)
T PF00769_consen 32 EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAE 106 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344545533 44457788899999999999999999999988888888777766666666555555544444443
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.36 E-value=57 Score=34.95 Aligned_cols=119 Identities=22% Similarity=0.342 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 002622 611 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAER---EVDKIALMKERAAIESEMEILSKLRREVEEQL 687 (899)
Q Consensus 611 l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~er---e~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 687 (899)
++.+-+.|+...|..++..=+........-+..++.|+.++|..- ..++..|-...++++.+...|- .+.+...
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le---~~~~~~~ 257 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE---QRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH---HHHHHHH
Confidence 334445566666666665555555555555566666666666532 2333344444444444443332 1222222
Q ss_pred HHhhhcceehhhHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHH
Q 002622 688 ESLMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALSMA 735 (899)
Q Consensus 688 q~L~s~kvei~~Ek~~l~kL~~~~e---~~~q~i~~~k~~LE~EkkAL~m~ 735 (899)
+.+-.. |..=...|.+|+.+++ .+.+.+.++|--|+.|..+.+-|
T Consensus 258 ~~~~~~---i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 258 EEYQAE---IAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---hhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111111 1111233445555543 44588999999999998876543
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.33 E-value=86 Score=37.02 Aligned_cols=114 Identities=26% Similarity=0.266 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHH
Q 002622 609 SALVAEVEKEINESFEKELSM---EREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEE 685 (899)
Q Consensus 609 ~~l~~~~~~di~~~f~~el~~---Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde 685 (899)
+..+..+++++..+=..++.. ++.....+...+..+..||+..+..-++-+.+...=|..+++=+-.|-+.|.|+..
T Consensus 248 ~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~ 327 (522)
T PF05701_consen 248 SAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566776666656665 35566667777888889999999888888888888888888888888888888888
Q ss_pred HHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002622 686 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 722 (899)
Q Consensus 686 ~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k 722 (899)
+-+++....+.|..=+..|.+++.+++.-+..-.+.+
T Consensus 328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k 364 (522)
T PF05701_consen 328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK 364 (522)
T ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh
Confidence 8888888888777777777777777765544444433
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.33 E-value=61 Score=35.30 Aligned_cols=60 Identities=27% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 735 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 735 (899)
+..|..|++-.=+++.+-.-++..=.+++++|..+++..++.+.+++-.+...++++.-.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333333333344555555666666666666666666655555443
No 42
>PLN03188 kinesin-12 family protein; Provisional
Probab=85.12 E-value=27 Score=45.41 Aligned_cols=119 Identities=23% Similarity=0.314 Sum_probs=79.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhhhh
Q 002622 604 AVSEHSALVAEVEKEINESFEKELSMER---EKIDVVEKMAEE-------------ARQELERLRAEREVDKIALMKERA 667 (899)
Q Consensus 604 av~~~~~l~~~~~~di~~~f~~el~~Er---~~~~~vek~~ee-------------a~~eLe~~r~ere~e~~~llKerA 667 (899)
|+-+|..|+++- -|++.-+-+=|.+=| +=|.+|-|-+.. .-.||--||.+||||..-|.+|--
T Consensus 1105 am~ghar~~e~y-a~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk 1183 (1320)
T PLN03188 1105 AMEGHARMLEQY-ADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENK 1183 (1320)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455677788774 566655555444443 345556554433 346999999999999988877754
Q ss_pred -----------HHHHHHHHHHHhHHHHHHHHHHhhhcceeh-hhHHHHHHHHHHHHHHHH-HHHHHhhHHH
Q 002622 668 -----------AIESEMEILSKLRREVEEQLESLMSNKVEI-SYEKERINMLRKEAENEN-QEIARLQYEL 725 (899)
Q Consensus 668 -----------a~e~e~q~L~~Lr~EVde~~q~L~s~kvei-~~Ek~~l~kL~~~~e~~~-q~i~~~k~~L 725 (899)
||.+-=+||.+||+= |.--.++-+|... -+|-+++-|...++..|| .+|+-++-.|
T Consensus 1184 ~l~~qlrdtaeav~aagellvrl~ea--eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1184 SLQAQLRDTAEAVQAAGELLVRLKEA--EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667899999863 3344566666543 355666667667777788 7888887777
No 43
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.11 E-value=1.2e+02 Score=39.65 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHH-------HHhHH---HHHHHHH
Q 002622 622 SFEKELSMEREKIDVVEKMAEEARQELERLRAEREVD---KIALMKERAAIESEMEIL-------SKLRR---EVEEQLE 688 (899)
Q Consensus 622 ~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e---~~~llKerAa~e~e~q~L-------~~Lr~---EVde~~q 688 (899)
.-.+++..|+++...++.+...-..||+.++.....- +..+.+.|+.++.....+ .+||. +...|+|
T Consensus 498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq 577 (1317)
T KOG0612|consen 498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQ 577 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHH
Confidence 4456677777777777777777777777774433332 223444444444322221 12222 2333333
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002622 689 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 729 (899)
Q Consensus 689 ~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 729 (899)
.+.. +.....++++-|+......-++--.+++++|+++
T Consensus 578 ~~~e---~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~ 615 (1317)
T KOG0612|consen 578 QELE---ENRDLEDKLSLLEESKSKLSKENKKLRSELEKER 615 (1317)
T ss_pred HHhh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 4444555555555544444444445555555554
No 44
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=84.47 E-value=54 Score=33.97 Aligned_cols=59 Identities=29% Similarity=0.391 Sum_probs=32.4
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHh
Q 002622 663 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARL 721 (899)
Q Consensus 663 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~ 721 (899)
.+.-..++.+.+.|.+...+++..-+.|...+-.+-.-+..++.+..+...+.+.|+.+
T Consensus 88 ~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAgl 146 (201)
T PF12072_consen 88 QQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGL 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344555556666666666666666555555555555555555555555555555443
No 45
>PRK11637 AmiB activator; Provisional
Probab=84.33 E-value=81 Score=35.86 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHH
Q 002622 587 AVNEELQRIEAES 599 (899)
Q Consensus 587 ~v~eEL~RlEAE~ 599 (899)
.+.++|..++.+-
T Consensus 44 ~~~~~l~~l~~qi 56 (428)
T PRK11637 44 DNRDQLKSIQQDI 56 (428)
T ss_pred hhHHHHHHHHHHH
Confidence 3455555555443
No 46
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=83.84 E-value=52 Score=38.43 Aligned_cols=145 Identities=23% Similarity=0.239 Sum_probs=81.9
Q ss_pred CccCCCCCCcHHHH--HHHHHcccchhhHHHH--HHHHHHHHHhhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002622 562 RLFQPDKPVTNAQA--AVALAIGEASDAVNEE--LQRIEAESAAENAVSE-HSALVAEVEKEINESFEKELSMEREKIDV 636 (899)
Q Consensus 562 g~FqPnKPVTRAEA--AAaL~~G~~~e~v~eE--L~RlEAE~~a~~av~~-~~~l~~~~~~di~~~f~~el~~Er~~~~~ 636 (899)
.+|.|.+=-|+-.+ =.+.++-..++.+..| +.+.|....++..-.. --.|..++ .||+ +|.++|..|=+...+
T Consensus 21 ~r~s~~dW~~~~~~~~~~a~a~r~~s~~ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R~-~di~-~Wk~el~~ele~l~~ 98 (421)
T KOG2685|consen 21 QRYSPTDWFTRNSAQVQEADASRDQSERIRRESRLLVNETNALTDKMQRDTTEKLGQRL-DDVN-FWKGELDRELEDLAA 98 (421)
T ss_pred cccChhhhcccccccccHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHH-HHHHHHHHHHHHHHH
Confidence 34555544333222 2233444445556666 4555566666555444 34577776 7896 999999988655444
Q ss_pred HHHHHHH----HHHHHHHHH---HH-------HHHH----------HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhh
Q 002622 637 VEKMAEE----ARQELERLR---AE-------REVD----------KIALMKERAAIESEMEILSKLRREVEEQLESLMS 692 (899)
Q Consensus 637 vek~~ee----a~~eLe~~r---~e-------re~e----------~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s 692 (899)
.=.+++. ...+|+-+. .. |++- -.+|+||-+.|++=+++|.+.=.++.+|+..+-
T Consensus 99 E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr- 177 (421)
T KOG2685|consen 99 EIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTLERAEEQLRLNR- 177 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 2222222 222222111 01 2211 136888888888888888888888888876543
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHH
Q 002622 693 NKVEISYEKERINMLRKEAENENQEI 718 (899)
Q Consensus 693 ~kvei~~Ek~~l~kL~~~~e~~~q~i 718 (899)
+-=++|..|++.|.+++
T Consensus 178 ---------~ar~~Le~Dl~dK~eA~ 194 (421)
T KOG2685|consen 178 ---------EARQNLERDLSDKQEAY 194 (421)
T ss_pred ---------HHHHHHhhhhhhhhhhh
Confidence 23356666777766654
No 47
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.57 E-value=1.3e+02 Score=37.60 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=46.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------HHHHhHHHHHHHHHHhhhcceeh
Q 002622 627 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME---------ILSKLRREVEEQLESLMSNKVEI 697 (899)
Q Consensus 627 l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q---------~L~~Lr~EVde~~q~L~s~kvei 697 (899)
+..++.--.+|.-+.+++.+-+..+ |+....+.|||-|+..|+. ++..+-.|-|||.-.|+.+--+.
T Consensus 390 ~~~~k~~~s~~ssl~~e~~QRva~l----EkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 390 DLKRKSNESEVSSLREEYHQRVATL----EKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred HHHHHhhcccccchHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445666666666655443 5556788888888888776 34445566899999998877666
Q ss_pred hhHH
Q 002622 698 SYEK 701 (899)
Q Consensus 698 ~~Ek 701 (899)
+-++
T Consensus 466 SK~q 469 (961)
T KOG4673|consen 466 SKKQ 469 (961)
T ss_pred HHHH
Confidence 5543
No 48
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.50 E-value=2e+02 Score=39.67 Aligned_cols=100 Identities=26% Similarity=0.266 Sum_probs=55.0
Q ss_pred HHHHHHHhhHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 002622 594 RIEAESAAENAVSEHSALVAEV--EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIES 671 (899)
Q Consensus 594 RlEAE~~a~~av~~~~~l~~~~--~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~ 671 (899)
|-|-|.....-+.+...|..++ +++.-+-=++.+..++.+..++|+.+.+...+++.+ ++.+..+=+++-.++.
T Consensus 861 ~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~----ee~~~~le~~~~~~~~ 936 (1930)
T KOG0161|consen 861 RKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEE----EEKNAELERKKRKLEQ 936 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3333333333344444444444 555555555555555666666666665555544433 3334455555555566
Q ss_pred HHHHHHHhHHHHHHHHHHhhhcceeh
Q 002622 672 EMEILSKLRREVEEQLESLMSNKVEI 697 (899)
Q Consensus 672 e~q~L~~Lr~EVde~~q~L~s~kvei 697 (899)
+.+.|.....+++.+++.|..++...
T Consensus 937 e~~~l~~~~~~~E~~~~k~~~Ek~~~ 962 (1930)
T KOG0161|consen 937 EVQELKEQLEELELTLQKLELEKNAA 962 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677677777777777777665544
No 49
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.43 E-value=54 Score=38.61 Aligned_cols=148 Identities=24% Similarity=0.303 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHH-HHHHhhHHHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002622 585 SDAVNEELQRIE-AESAAENAVSEHSALV--------------AEVEKEINESFEKELSMEREKIDVVEKMAEEARQELE 649 (899)
Q Consensus 585 ~e~v~eEL~RlE-AE~~a~~av~~~~~l~--------------~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe 649 (899)
.+.+.+|+.||. +|+..+..-.+...|- .++.+.+...++.++..=.++...+.-.++++..+|.
T Consensus 211 ~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~ 290 (563)
T TIGR00634 211 DEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQ 290 (563)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777776 6666555544433221 1122233222443433333444444444444444444
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002622 650 RLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 729 (899)
Q Consensus 650 ~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 729 (899)
+....-+-+-. +-..++.....+.+|++.--..++.|...+-++..|-+.++....+++.-.+++..++..++.=-
T Consensus 291 ~~~~~l~~dp~----~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a 366 (563)
T TIGR00634 291 NYLDELEFDPE----RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAA 366 (563)
T ss_pred HHHHhCCCCHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332111111 11335555556666665555555555555555555555555555566666666666655555444
Q ss_pred HHHHHHH
Q 002622 730 KALSMAR 736 (899)
Q Consensus 730 kAL~m~R 736 (899)
+.|+..|
T Consensus 367 ~~Ls~~R 373 (563)
T TIGR00634 367 VALSLIR 373 (563)
T ss_pred HHHHHHH
Confidence 5555543
No 50
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.41 E-value=27 Score=43.16 Aligned_cols=12 Identities=8% Similarity=0.396 Sum_probs=4.9
Q ss_pred HHhHHHHHHHHH
Q 002622 677 SKLRREVEEQLE 688 (899)
Q Consensus 677 ~~Lr~EVde~~q 688 (899)
..++.|..++++
T Consensus 569 ~~~~~~a~~~l~ 580 (782)
T PRK00409 569 EEAEKEAQQAIK 580 (782)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=83.17 E-value=1.2e+02 Score=37.09 Aligned_cols=12 Identities=33% Similarity=0.385 Sum_probs=5.3
Q ss_pred hhhhhhhhhHhh
Q 002622 881 RVAGDCREGVEK 892 (899)
Q Consensus 881 r~~~~c~~gv~k 892 (899)
.+.++++..+.+
T Consensus 468 ~~~~~~~~~~~~ 479 (880)
T PRK02224 468 ETIEEDRERVEE 479 (880)
T ss_pred hhHHHHHHHHHH
Confidence 344444444444
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=82.87 E-value=93 Score=37.58 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHH----HHHHHhhHHHHHH
Q 002622 701 KERINMLRKEAENEN----QEIARLQYELEVE 728 (899)
Q Consensus 701 k~~l~kL~~~~e~~~----q~i~~~k~~LE~E 728 (899)
+.++|.|+.+|++.. ++|.+++.....+
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd 234 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRD 234 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 345555666665554 5555555554444
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.81 E-value=97 Score=35.64 Aligned_cols=13 Identities=0% Similarity=0.391 Sum_probs=7.9
Q ss_pred ccHHHHHHHHHHH
Q 002622 412 CIRREYARWLVSA 424 (899)
Q Consensus 412 ITRAEFARwLVRA 424 (899)
.+..+|..+|...
T Consensus 110 ~~~~~~~~~i~~~ 122 (562)
T PHA02562 110 ASSKDFQKYFEQM 122 (562)
T ss_pred ccHHHHHHHHHHH
Confidence 3556676666663
No 54
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.54 E-value=53 Score=32.87 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=13.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002622 624 EKELSMEREKIDVVEKMAEEARQELERLR 652 (899)
Q Consensus 624 ~~el~~Er~~~~~vek~~eea~~eLe~~r 652 (899)
.+|+..++++..+.+..+.....++...+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455555555555544444443333
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.65 E-value=88 Score=34.61 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHhHHHHH
Q 002622 608 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVD---KIALMKERAAIESEMEILSKLRREVE 684 (899)
Q Consensus 608 ~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e---~~~llKerAa~e~e~q~L~~Lr~EVd 684 (899)
+..|.++ ++|- -|+-++ .......++..++....+.+.+....+.- +..+...+++++.+...|..+..|++
T Consensus 130 ~aRl~aK--~~WY-eWR~~l--l~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~ 204 (325)
T PF08317_consen 130 YARLEAK--KMWY-EWRMQL--LEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE 204 (325)
T ss_pred HHHHHHH--HHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334443 4553 455433 34555566666666666666666533322 22444455556666555555544432
Q ss_pred --------HHHHHhhhcceehhhHHHHHHHHHHHHHHHHH
Q 002622 685 --------EQLESLMSNKVEISYEKERINMLRKEAENENQ 716 (899)
Q Consensus 685 --------e~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q 716 (899)
..-+.|+..+.+|..-+..|..|+.+++...+
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433333
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.43 E-value=2e+02 Score=37.76 Aligned_cols=59 Identities=25% Similarity=0.219 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 002622 705 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQ 763 (899)
Q Consensus 705 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~ 763 (899)
++.+.+++.-+.++.+|+-.++.|.+-|.=-+.=+..+...-++--.-+|+.--.|..+
T Consensus 436 e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 436 EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444555555666666666666666666666666666666666666666655555543
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.83 E-value=1.6e+02 Score=39.34 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=9.6
Q ss_pred CCccHHHHHHHHHH
Q 002622 410 DLCIRREYARWLVS 423 (899)
Q Consensus 410 ~pITRAEFARwLVR 423 (899)
.|+|..|+-..+-.
T Consensus 146 ~~~ti~Elk~~i~e 159 (1486)
T PRK04863 146 RVLTLNELKDKAAA 159 (1486)
T ss_pred ccCCHHHHHHHHHH
Confidence 46777887776655
No 58
>PRK12705 hypothetical protein; Provisional
Probab=79.77 E-value=1.4e+02 Score=35.64 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=9.7
Q ss_pred hcCcEEEEcCCccc
Q 002622 762 RQGIKVVVDKDLRE 775 (899)
Q Consensus 762 ~~gikv~vd~~~~~ 775 (899)
..|+.|+||+.-..
T Consensus 227 ~tGvdliiddtp~~ 240 (508)
T PRK12705 227 LTGVDLIIDDTPEA 240 (508)
T ss_pred hhCCceEecCCccc
Confidence 45888888875544
No 59
>PRK09039 hypothetical protein; Validated
Probab=78.36 E-value=1.2e+02 Score=34.06 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002622 687 LESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARA 737 (899)
Q Consensus 687 ~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~Rs 737 (899)
-+.|...+.+|...+-.++.|+.+++.=...+..++..|.+=++-..-++.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~ 172 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQA 172 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777888877777777777777777665554444443
No 60
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.29 E-value=16 Score=44.99 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceeh
Q 002622 633 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 697 (899)
Q Consensus 633 ~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei 697 (899)
-++..++++.+-..+++++= ..|-++|..++.+++.+..++.|++++.+.|..++-++
T Consensus 503 ii~~A~~~~~~~~~~~~~li-------~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 503 IIEEAKKLIGEDKEKLNELI-------ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 44445555555555555555555555555544444333
No 61
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=78.20 E-value=23 Score=45.18 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=24.1
Q ss_pred CccCCCCCCcHHHHHHHHHcccchhhHHHHHHHHHHHHHhhH
Q 002622 562 RLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAEN 603 (899)
Q Consensus 562 g~FqPnKPVTRAEAAAaL~~G~~~e~v~eEL~RlEAE~~a~~ 603 (899)
...-|..-.|.-.|.+-.|.|+..-. ..|-.|+|.|+.-+.
T Consensus 408 ~~~~~s~~~~~~~~~~g~~g~r~eke-~~ER~r~e~e~~er~ 448 (1021)
T PTZ00266 408 DRKYPQDGATHCHAVNGHYGGRVDKD-HAERARIEKENAHRK 448 (1021)
T ss_pred ccccccccccccccccCccccccchh-HHHHHHHHHHHHHHH
Confidence 34456666666666666666665332 256677777765443
No 62
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.15 E-value=44 Score=37.34 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCcccccccchh
Q 002622 703 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVM 782 (899)
Q Consensus 703 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~ 782 (899)
.|+.|...+-..+.++.+...+||..|.+...++.=..+=-...++|-..| ++|||-++=| .-..+.+.++.
T Consensus 120 ~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli-------~khGlVlv~~-~~ngd~~~~~~ 191 (302)
T PF09738_consen 120 KLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI-------EKHGLVLVPD-ATNGDTSDEPN 191 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCeeeCCC-CCCCccccCcc
Confidence 333444444444445555666788888888887754433222334444444 5799988766 55556666666
Q ss_pred hhhcccccch
Q 002622 783 WVNAGKQFSV 792 (899)
Q Consensus 783 w~~~~~~~~~ 792 (899)
|.-.++..-|
T Consensus 192 ~~~~~~~~~v 201 (302)
T PF09738_consen 192 NVGHPKRALV 201 (302)
T ss_pred ccCCCccccc
Confidence 6655555444
No 63
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=77.37 E-value=46 Score=41.16 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHhHHHHHHHHHHh
Q 002622 644 ARQELERLRAEREVDKIALMKERAAIESE-MEILSKLRREVEEQLESL 690 (899)
Q Consensus 644 a~~eLe~~r~ere~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L 690 (899)
.+.++++++.+.++.+..|-+++..++.+ .+++..+++|..++++..
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a 577 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333332 234445555555555444
No 64
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.33 E-value=2.3e+02 Score=36.63 Aligned_cols=16 Identities=6% Similarity=0.368 Sum_probs=7.7
Q ss_pred ccCCCCcCcHHHHHHH
Q 002622 490 FFLPESPLSRQDLVSW 505 (899)
Q Consensus 490 tF~PD~PITRQELAvw 505 (899)
||==+...+..|....
T Consensus 112 Y~INg~~~~~~dI~~l 127 (1163)
T COG1196 112 YYINGEKVRLKDIQDL 127 (1163)
T ss_pred EEECCcEeeHHHHHHH
Confidence 4444455555554443
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.25 E-value=1.8e+02 Score=35.33 Aligned_cols=40 Identities=30% Similarity=0.523 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE 656 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere 656 (899)
+..+. ....+|..++++-+.++...+++....+.++.+++
T Consensus 170 ~~~v~-~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~ 209 (546)
T PF07888_consen 170 REEVE-RLEAELEQEEEEMEQLKQQQKELTESSEELKEERE 209 (546)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44553 45667777777766666666666665555554443
No 66
>PRK09039 hypothetical protein; Validated
Probab=77.06 E-value=1.3e+02 Score=33.79 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=14.1
Q ss_pred cccchhhHHHHHHHHHHHHHhhHH
Q 002622 581 IGEASDAVNEELQRIEAESAAENA 604 (899)
Q Consensus 581 ~G~~~e~v~eEL~RlEAE~~a~~a 604 (899)
-...-.+..+||++|+++ +++.+
T Consensus 44 Ls~~i~~~~~eL~~L~~q-Ia~L~ 66 (343)
T PRK09039 44 LSREISGKDSALDRLNSQ-IAELA 66 (343)
T ss_pred HHHHHhhHHHHHHHHHHH-HHHHH
Confidence 444556677788888776 34433
No 67
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.04 E-value=87 Score=31.66 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 002622 588 VNEELQRIEAE 598 (899)
Q Consensus 588 v~eEL~RlEAE 598 (899)
|.++|.|.+.+
T Consensus 8 v~~kLK~~~~e 18 (140)
T PF10473_consen 8 VEEKLKESESE 18 (140)
T ss_pred HHHHHHHHHHh
Confidence 34444444433
No 68
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.88 E-value=82 Score=40.64 Aligned_cols=84 Identities=20% Similarity=0.155 Sum_probs=54.1
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 755 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEe 755 (899)
+.++......+...+.+-.-.+.-.+..+.+|+.+.....++.-++.-+|.....-|..+.+=--.=.|+.+-++ ++ +
T Consensus 418 ver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~e-av-e 495 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQE-AV-E 495 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHH-HH-H
Confidence 345555556666666666666777777888888888888888888888888888777777543222233333332 22 3
Q ss_pred HhHHHh
Q 002622 756 ARDRWE 761 (899)
Q Consensus 756 a~~rW~ 761 (899)
+-.||-
T Consensus 496 ~lKr~f 501 (1141)
T KOG0018|consen 496 ALKRLF 501 (1141)
T ss_pred HHHHhC
Confidence 456664
No 69
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=76.47 E-value=2e+02 Score=35.49 Aligned_cols=7 Identities=43% Similarity=0.690 Sum_probs=3.2
Q ss_pred ccCCCCc
Q 002622 490 FFLPESP 496 (899)
Q Consensus 490 tF~PD~P 496 (899)
+|-|.+.
T Consensus 574 ~~l~l~~ 580 (1179)
T TIGR02168 574 TFLPLDS 580 (1179)
T ss_pred EEeeccc
Confidence 4555433
No 70
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.92 E-value=1.5e+02 Score=37.11 Aligned_cols=160 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002622 596 EAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDV-------VEKMAEEARQELERLRAEREVDKIALMKERAA 668 (899)
Q Consensus 596 EAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~-------vek~~eea~~eLe~~r~ere~e~~~llKerAa 668 (899)
|.|++-+......+.|-.- .-+|+.||..+++.||....+ ....|.....|+++...+.+.--..| |-+..
T Consensus 11 E~e~L~~ele~~~~~l~~~-~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e 88 (775)
T PF10174_consen 11 ENERLRRELERKQSKLGSS-MNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRE 88 (775)
T ss_pred HHHHHHHHHHHHHhHHHHH-HHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhH
Q ss_pred HHHHHHHHHHhHHHHH---------HHHHHhhhcceehhhH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---
Q 002622 669 IESEMEILSKLRREVE---------EQLESLMSNKVEISYE----KERINMLRKEAENENQEIARLQYELEVERKAL--- 732 (899)
Q Consensus 669 ~e~e~q~L~~Lr~EVd---------e~~q~L~s~kvei~~E----k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL--- 732 (899)
+..=.+-|.+-..+.+ +++.+|-.++=....| +..+++++..++.-++.+.....+++-=.++|
T Consensus 89 ~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~ 168 (775)
T PF10174_consen 89 LNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSK 168 (775)
T ss_pred HHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred -----------HHHHHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 002622 733 -----------SMARAWAEDEAKRAREQAKALEGARDRWER 762 (899)
Q Consensus 733 -----------~m~RsWaEdEA~r~~e~A~vLEea~~rW~~ 762 (899)
.|.+.-++.|+...+ |+....+|++
T Consensus 169 g~~~~~~~~~~~~~~~~~~~e~~~~~-----le~lle~~e~ 204 (775)
T PF10174_consen 169 GLSAEAEEEDNEALRRIREAEARIMR-----LESLLERKEK 204 (775)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHH
No 71
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.31 E-value=1.6e+02 Score=36.78 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH---HHhhhcceehhhHHHHHHHHH
Q 002622 632 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL---ESLMSNKVEISYEKERINMLR 708 (899)
Q Consensus 632 ~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~---q~L~s~kvei~~Ek~~l~kL~ 708 (899)
.++.++|.-+-.++++|.+.++|.+-=....-.-+.+.++--..-.+||.|+.|.= +||+.+-.++-.|---|||.-
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444555555566666666666554333332223333333333345677766653 456666666666666666665
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH
Q 002622 709 KEAENENQEIARLQYELEVERKALSMARAWAEDEA 743 (899)
Q Consensus 709 ~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA 743 (899)
+-+-.-+=+..-+|-++..=.+=..++++=+||-+
T Consensus 114 s~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 114 SVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444443334444444333333444555554433
No 72
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=74.19 E-value=51 Score=42.26 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 002622 415 REYARWLVS 423 (899)
Q Consensus 415 AEFARwLVR 423 (899)
.++..+|.+
T Consensus 269 ~eL~dLI~~ 277 (1021)
T PTZ00266 269 KELNILIKN 277 (1021)
T ss_pred HHHHHHHHH
Confidence 344444444
No 73
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.70 E-value=72 Score=34.41 Aligned_cols=47 Identities=28% Similarity=0.189 Sum_probs=32.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002622 627 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 674 (899)
Q Consensus 627 l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q 674 (899)
|..=|.|..++||+..+.+.|++.++.+. +-+.+|-||+..+..|+-
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34447888889999988888888777665 555555555555555543
No 74
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.43 E-value=2e+02 Score=34.00 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcce
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKV 695 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kv 695 (899)
+.+|. .-..||..=.....++|---+.|++||+.-++||+.-...+-.-|--+-.--|+|.+| -+|+|+|-++=-
T Consensus 80 ~~qlr-~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~----t~Q~q~lqtrl~ 154 (499)
T COG4372 80 RPQLR-ALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL----TKQAQDLQTRLK 154 (499)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44443 2334454444445555555566777777777776643332222222222223444443 455555554444
Q ss_pred ehhhHHH
Q 002622 696 EISYEKE 702 (899)
Q Consensus 696 ei~~Ek~ 702 (899)
.++.+..
T Consensus 155 ~l~~qr~ 161 (499)
T COG4372 155 TLAEQRR 161 (499)
T ss_pred HHHHHHH
Confidence 4444433
No 75
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.40 E-value=95 Score=38.40 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHHHHHcccchhhHHHH-HHHHHHHHHhhHHHHhhH
Q 002622 572 NAQAAVALAIGEASDAVNEE-LQRIEAESAAENAVSEHS 609 (899)
Q Consensus 572 RAEAAAaL~~G~~~e~v~eE-L~RlEAE~~a~~av~~~~ 609 (899)
-.|.-.+|. ++.+.+++| |.+.+ .|+.+...|.
T Consensus 534 ~~E~l~lL~--~a~~vlreeYi~~~~---~ar~ei~~rv 567 (717)
T PF10168_consen 534 PQECLELLS--QATKVLREEYIEKQD---LAREEIQRRV 567 (717)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344445544 788888888 66664 2444444443
No 76
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=72.84 E-value=1.4e+02 Score=34.66 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002622 585 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEE 643 (899)
Q Consensus 585 ~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~ee 643 (899)
-..+.+||.-+......-.--. ..|.++.+.|+ .++-+.|.+||-|...+|..+.+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~--e~Lk~~~~~e~-~~~~~~LqEEr~R~erLEeqlNd 269 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESI--EKLKEQYQREY-QFILEALQEERYRYERLEEQLND 269 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677766655443222222 24777788898 49999999999999888776643
No 77
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=72.66 E-value=46 Score=33.54 Aligned_cols=79 Identities=28% Similarity=0.377 Sum_probs=57.8
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 755 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEe 755 (899)
|..|..+..+.++.+-.+-..--.=.+.|+-+..+++.|-+.+..+--.+|++.+|+ ..|++|-++|++.++.
T Consensus 3 LYel~~~~~~l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~-------k~E~krL~~rkk~~e~ 75 (162)
T PF05565_consen 3 LYELTDEYLELLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAI-------KAEIKRLQERKKSIEN 75 (162)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 444555555555444343222112246788899999999999999999999988764 6899999999999999
Q ss_pred HhHHHh
Q 002622 756 ARDRWE 761 (899)
Q Consensus 756 a~~rW~ 761 (899)
-..|++
T Consensus 76 ~~~~Lk 81 (162)
T PF05565_consen 76 RIDRLK 81 (162)
T ss_pred HHHHHH
Confidence 888877
No 78
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.29 E-value=2.4e+02 Score=34.04 Aligned_cols=15 Identities=7% Similarity=0.421 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q 002622 611 LVAEVEKEINESFEK 625 (899)
Q Consensus 611 l~~~~~~di~~~f~~ 625 (899)
+++++++|++.+|..
T Consensus 183 ~~~~L~~dl~~~~~~ 197 (650)
T TIGR03185 183 LIDRLAGDLTNVLRR 197 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467778888877664
No 79
>PRK03918 chromosome segregation protein; Provisional
Probab=71.23 E-value=2.5e+02 Score=34.32 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=15.2
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHH
Q 002622 684 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 719 (899)
Q Consensus 684 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~ 719 (899)
...++.|-.....+-.+.+.+++-..+++.+.+.+.
T Consensus 306 ~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~ 341 (880)
T PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEERLE 341 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333
No 80
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.16 E-value=1.5e+02 Score=35.19 Aligned_cols=35 Identities=37% Similarity=0.365 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002622 721 LQYELEVERKALSMARAWAEDEAKRAREQAKALEG 755 (899)
Q Consensus 721 ~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEe 755 (899)
||+.-|+|-+=+.+-|.=+|.+-+-++|-|.-|..
T Consensus 341 Lq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 341 LQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45666778888888898888888888777766554
No 81
>PRK12705 hypothetical protein; Provisional
Probab=71.13 E-value=1.3e+02 Score=36.11 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002622 683 VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE 748 (899)
Q Consensus 683 Vde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e 748 (899)
++..-+.|...+-.+...++.|+++..+...+.+.+..+.. -+|-.++-.=+|+|+++.-+
T Consensus 100 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~-----~eak~~l~~~~~~~~~~e~~ 160 (508)
T PRK12705 100 LDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTP-----EQARKLLLKLLDAELEEEKA 160 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445555553333334444433332 24666777777888775433
No 82
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=70.88 E-value=1.2e+02 Score=37.40 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHH
Q 002622 585 SDAVNEELQRIEA 597 (899)
Q Consensus 585 ~e~v~eEL~RlEA 597 (899)
.+.+.|-|+|||-
T Consensus 106 ~~~yQerLaRLe~ 118 (861)
T KOG1899|consen 106 YPEYQERLARLEM 118 (861)
T ss_pred chHHHHHHHHHhc
Confidence 3668899999993
No 83
>PRK11281 hypothetical protein; Provisional
Probab=70.86 E-value=3.4e+02 Score=35.61 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 002622 736 RAWAEDEAKRAREQAKALEGARDRWER 762 (899)
Q Consensus 736 RsWaEdEA~r~~e~A~vLEea~~rW~~ 762 (899)
|.++..+-.+-+++-+.|.++-..++.
T Consensus 229 ~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 229 RDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555666666666665553
No 84
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=70.06 E-value=1.7e+02 Score=31.73 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002622 622 SFEKELSMEREKIDVVEKMAEEARQELERLRA 653 (899)
Q Consensus 622 ~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ 653 (899)
.+..++...+..+...++-+..+..++.+.+.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433333
No 85
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=69.69 E-value=2.4e+02 Score=33.50 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=20.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002622 624 EKELSMEREKIDVVEKMAEEARQELERL 651 (899)
Q Consensus 624 ~~el~~Er~~~~~vek~~eea~~eLe~~ 651 (899)
+++|..|+.+..-.||+.+.+..=++-+
T Consensus 211 ~e~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 211 DEALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4567788888888888877666655555
No 86
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.57 E-value=46 Score=35.20 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=14.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 002622 631 REKIDVVEKMAEEARQELERLRAE 654 (899)
Q Consensus 631 r~~~~~vek~~eea~~eLe~~r~e 654 (899)
|.+..++|+-+++++.+|++.+.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445556666666677777776544
No 87
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=69.53 E-value=3.3e+02 Score=34.94 Aligned_cols=210 Identities=18% Similarity=0.215 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH--------------hHHHHHHHHHHh---hhcceehhhHHHHHHHHHHHHH----
Q 002622 654 EREVDKIALMKERAAIESEMEILSK--------------LRREVEEQLESL---MSNKVEISYEKERINMLRKEAE---- 712 (899)
Q Consensus 654 ere~e~~~llKerAa~e~e~q~L~~--------------Lr~EVde~~q~L---~s~kvei~~Ek~~l~kL~~~~e---- 712 (899)
.-++++..|+-+.|..+.|+++|.+ .+.|+.+-+++| -+.++..-|--++++-|-+-.+
T Consensus 376 nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrr 455 (1265)
T KOG0976|consen 376 NVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRR 455 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHh
Confidence 3345666777788888888877753 233444444443 3333333333334444444333
Q ss_pred ----HHHHHHHHhh---HHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEc--CCcccccccc
Q 002622 713 ----NENQEIARLQ---YELEVERK---ALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVD--KDLREESDAA 780 (899)
Q Consensus 713 ----~~~q~i~~~k---~~LE~Ekk---AL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd--~~~~~~~~~~ 780 (899)
..++-|.+++ .-||.-|| -+-|+.+-.+.||+|-.+--+.|.+.+=-++..--+..-- +|-.-+.+
T Consensus 456 raIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~ag~h~adss-- 533 (1265)
T KOG0976|consen 456 RAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKAGDHPADSS-- 533 (1265)
T ss_pred hHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC--
Confidence 3333333322 22222222 1346666677777776655555544432222100000000 01111111
Q ss_pred hhhhhcccccchHHHHHhHHHHHHHHHHhhhhcc----------cchHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHH
Q 002622 781 VMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS----------GKSKEIINTIIHKILLFIS---NLKKWASKASMRAA 847 (899)
Q Consensus 781 ~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~----------~~~~~~~~~~~~~i~~~i~---~l~~~~~~~~~~~~ 847 (899)
-....+-+--+||.|...=--|+..|-..++ +++|.-..+.+++|-++-. .+|+--+.++..+.
T Consensus 534 ---qrdselrsAkktIqevkadn~k~q~lL~evrq~q~k~leenv~lRkgma~a~~kIee~kr~w~nsret~erl~let~ 610 (1265)
T KOG0976|consen 534 ---QRDSELRSAKKTIQEVKADNPKAQSLLAEVRQRQKKSLEENVFLRKGMARAHHKIEERKRVWLNSRETKERLCLETV 610 (1265)
T ss_pred ---cccHHHHHHHHHHHhccccCHHHHHHhhchhhhhhhccChHHHHHHHHHHHHhhhHHHHhhhhhhHHHHHHHHHHhh
Confidence 1223344455677665333334445544444 5667777777788776543 35666677777788
Q ss_pred HHHHHHHHHhhhhHHHHHHhHH
Q 002622 848 ELKDATILKAKGSVQELQQSTA 869 (899)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~ 869 (899)
.++|. ..|....+++...-|.
T Consensus 611 ~~e~k-~~k~eeelqek~~qVm 631 (1265)
T KOG0976|consen 611 HFEDK-LDKLEEELQEKECQVM 631 (1265)
T ss_pred hhhhh-hHHHHHHHHHHHHHHh
Confidence 88887 7777777777665554
No 88
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.53 E-value=56 Score=33.87 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhh
Q 002622 643 EARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 722 (899)
Q Consensus 643 ea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k 722 (899)
+...+|+.++..|+.. .+|+.+-.+.+.|..-..++...|+.+. ....++|++|..++..-.+++.+-.
T Consensus 87 ~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~------~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 87 ELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYS------ENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555443 4444444443333333333333333222 1356788888888887777776655
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 002622 723 YELEVERKALSMARAWAED 741 (899)
Q Consensus 723 ~~LE~EkkAL~m~RsWaEd 741 (899)
-- +-++++|+..
T Consensus 156 DN-------I~~l~~~~~~ 167 (188)
T PF03962_consen 156 DN-------IFSLKSYLKK 167 (188)
T ss_pred hh-------HHHHHHHHHH
Confidence 33 4467777754
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=68.93 E-value=2.2e+02 Score=32.79 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=3.6
Q ss_pred HHHHhHHHh
Q 002622 753 LEGARDRWE 761 (899)
Q Consensus 753 LEea~~rW~ 761 (899)
++....-|+
T Consensus 274 ~~~~~~~~~ 282 (562)
T PHA02562 274 FQKVIKMYE 282 (562)
T ss_pred HHHHHHHhc
Confidence 333334443
No 90
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=68.80 E-value=1.2e+02 Score=36.73 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhccee
Q 002622 617 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVE 696 (899)
Q Consensus 617 ~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kve 696 (899)
+-|+.+|+.|+..=|.-+.+..+--..+..|+.+++.+-++-+.-+.| .-+.+.--|.++++.+-+|..-..+
T Consensus 84 s~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~-------~~k~~~~~re~~~~~~~~l~~leAe 156 (546)
T KOG0977|consen 84 SGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK-------AEKERRGAREKLDDYLSRLSELEAE 156 (546)
T ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHhhhhhhhhhH
Confidence 347777887777777666666665555555555555544333322222 1122233344455555555555555
Q ss_pred hhhHHHHHHHHHHHHHH
Q 002622 697 ISYEKERINMLRKEAEN 713 (899)
Q Consensus 697 i~~Ek~~l~kL~~~~e~ 713 (899)
+.+=+.++.+|..++..
T Consensus 157 ~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55544444444444333
No 91
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=68.69 E-value=1.5e+02 Score=30.78 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002622 607 EHSALVAEVEKEINESFE 624 (899)
Q Consensus 607 ~~~~l~~~~~~di~~~f~ 624 (899)
+++.|+.+++..+...+.
T Consensus 81 ERGlLL~rvrde~~~~l~ 98 (189)
T PF10211_consen 81 ERGLLLLRVRDEYRMTLD 98 (189)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 468888888877776665
No 92
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=68.61 E-value=3.3e+02 Score=34.61 Aligned_cols=188 Identities=19% Similarity=0.292 Sum_probs=103.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHH
Q 002622 631 REKIDVVEKMAEEARQELERLRAEREVDKIALMKER------AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 704 (899)
Q Consensus 631 r~~~~~vek~~eea~~eLe~~r~ere~e~~~llKer------Aa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l 704 (899)
|.+.++.+........-|+++-.=-+....+|+++. +|+.-|+..-.-|++||.+---...| .-|.-++
T Consensus 91 r~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s-----~~e~a~~ 165 (966)
T KOG4286|consen 91 RSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMS-----TLETARI 165 (966)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHH-----HHHHHHH
Confidence 444444444333344444444332233334555543 68888899889999998764222211 2344444
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCcccccccchhhh
Q 002622 705 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 784 (899)
Q Consensus 705 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~ 784 (899)
-=.+-.+|...+ .+-.++++-|-.|-.+.|. .+-+| |++..-|++-||.++ .|
T Consensus 166 fl~~~p~e~~e~--~~~~~e~~p~~r~q~~~r~--------~~kqa---~~~~~~we~l~~~~~-------------~w- 218 (966)
T KOG4286|consen 166 FLTEQPLEGLEK--YQEPRELPPEERAQNVTRL--------LRKQA---EEVNTEWEKLNLHSA-------------DW- 218 (966)
T ss_pred HHhcCCCcchhh--cCCcccCCHHHHHHHHHHH--------HHHHH---HHHHHHHHHhCcchh-------------hH-
Confidence 444444444444 4555666655554444332 33334 677788999998763 35
Q ss_pred hcccccchHHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002622 785 NAGKQFSVDQTVSRAQSLVDKLKAMANDVS------GKSKEIINTIIH---KILLFISNLKKWASKASMRAAELKDATI 854 (899)
Q Consensus 785 ~~~~~~~~~~~~~ra~~l~~klk~m~~~~~------~~~~~~~~~~~~---~i~~~i~~l~~~~~~~~~~~~~~~~~~~ 854 (899)
+-.|+.|+.|-+.|-..+..+..+++ +--+-|=+-+|. --++-|..+|+.++.+...++.+.|.|.
T Consensus 219 ----~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ 293 (966)
T KOG4286|consen 219 ----QRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLAR 293 (966)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHH
Confidence 35688898888877776666666554 111111111221 1223345667777777777777776654
No 93
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=68.17 E-value=2.7e+02 Score=33.41 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHcCCcccCcccccCCCCCCCCCccCCCCcCcHHHHHHH
Q 002622 457 DPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSW 505 (899)
Q Consensus 457 DPyf~yIQAAAEAGIIsGkLSG~~~~s~ddG~~tF~PD~PITRQELAvw 505 (899)
+-.|.+|..+. -||.|||.. .+-|.+.+.-|=+.+|.+
T Consensus 75 ~a~vdhI~nlr--rIiagyl~~---------aygY~~~~a~~lA~fit~ 112 (489)
T PF05262_consen 75 NARVDHINNLR--RIIAGYLEA---------AYGYSDEDAETLATFITI 112 (489)
T ss_pred CCCccHHHHHH--HHHHHHHHH---------hcCCChhhHHHHHHHHHH
Confidence 56778888764 588888864 234777666555555544
No 94
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.95 E-value=4e+02 Score=35.32 Aligned_cols=80 Identities=28% Similarity=0.312 Sum_probs=40.0
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002622 673 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKA 752 (899)
Q Consensus 673 ~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~v 752 (899)
.+++..++++.|+++..|--+-.-|..|...++ +++.-....+.++++++.+=..=|.||-.-.++.-++.-+--.-
T Consensus 453 ~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~e---kel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~ 529 (1293)
T KOG0996|consen 453 EELLEKEERELDEILDSLKQETEGIREEIEKLE---KELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK 529 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665555555555444333 33444444445555555554444555555455554444444444
Q ss_pred HHH
Q 002622 753 LEG 755 (899)
Q Consensus 753 LEe 755 (899)
|+.
T Consensus 530 L~~ 532 (1293)
T KOG0996|consen 530 LLA 532 (1293)
T ss_pred HHH
Confidence 443
No 95
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=67.31 E-value=3.6e+02 Score=34.59 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhHHHHHHHHHHHhHHH--
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA-----------EREVDKIALMKERAAIESEMEILSKLRRE-- 682 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~-----------ere~e~~~llKerAa~e~e~q~L~~Lr~E-- 682 (899)
+.+++ .|..-|-.|....++.=|+.++-+.+|.+-++ --+.++-.+-.++|+|.|. |..-|..
T Consensus 272 m~qlk-~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~---LlEarrk~e 347 (1265)
T KOG0976|consen 272 MRQLK-AKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCA---LLEARRKAE 347 (1265)
T ss_pred HHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhc
Confidence 45553 56666666665555555555554444444333 2234455566677777765 3333333
Q ss_pred -HHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002622 683 -VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 730 (899)
Q Consensus 683 -Vde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk 730 (899)
.|+.++.|--.+.+....-.+|+.+....+.+.|.+..++.+++--..
T Consensus 348 gfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 348 GFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555666666666666666666665554433
No 96
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=66.55 E-value=3.3e+02 Score=33.88 Aligned_cols=16 Identities=6% Similarity=0.397 Sum_probs=10.5
Q ss_pred ccCCCCcCcHHHHHHH
Q 002622 490 FFLPESPLSRQDLVSW 505 (899)
Q Consensus 490 tF~PD~PITRQELAvw 505 (899)
+|--+.++|+.++...
T Consensus 110 ~~~n~~~~~~~~~~~~ 125 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHDF 125 (1164)
T ss_pred EEECCccccHHHHHHH
Confidence 4555667887776554
No 97
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.70 E-value=48 Score=36.83 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002622 645 RQELERLRAEREVDKIALMKERAAIESEMEI 675 (899)
Q Consensus 645 ~~eLe~~r~ere~e~~~llKerAa~e~e~q~ 675 (899)
...|++++.+-.+++..|-+|++.++.|...
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555566665555443
No 98
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=65.68 E-value=2.8e+02 Score=34.38 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=45.2
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002622 684 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 755 (899)
Q Consensus 684 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEe 755 (899)
+..-+.|...+-+...-++.+.++..+++...+.+-.++..|+.+.+-|.--. +++..+.+-|.+++|-
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~---~e~~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK---KEKEERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 33333444444445555667777777777777777777888887777665444 4445566788888886
No 99
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.89 E-value=33 Score=31.26 Aligned_cols=46 Identities=13% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002622 800 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMR 845 (899)
Q Consensus 800 ~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~ 845 (899)
+.|++.+..+...+...+.+.++.+-+++...+..+++.+.++...
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~ 53 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQ 53 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555444444433
No 100
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=64.84 E-value=2.2e+02 Score=31.17 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002622 701 KERINMLRKEAENENQEIARLQYELE 726 (899)
Q Consensus 701 k~~l~kL~~~~e~~~q~i~~~k~~LE 726 (899)
+..+..++.++..-..++.+++..++
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~ 227 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQID 227 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 101
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.64 E-value=4.3e+02 Score=34.49 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 002622 645 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 693 (899)
Q Consensus 645 ~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~ 693 (899)
...+-++|.+-+.+...+...++.+|.+...|...++|++.....+.-.
T Consensus 673 ~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~ 721 (1072)
T KOG0979|consen 673 LKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILD 721 (1072)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666888899999999999999999999887776543
No 102
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=64.27 E-value=2.2e+02 Score=30.97 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQE 647 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~e 647 (899)
+..+.+.+...+...+.+...+.+.+......
T Consensus 156 ~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~ 187 (319)
T PF02601_consen 156 RQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRR 187 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 45566777777777777766666665554443
No 103
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=64.09 E-value=2.9e+02 Score=32.32 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhHHHHhh-HHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002622 591 ELQRIEAESAAENAVSEH-SALVAEVEKEIN---ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMK 664 (899)
Q Consensus 591 EL~RlEAE~~a~~av~~~-~~l~~~~~~di~---~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llK 664 (899)
=+..|||++.+..--+++ ..+++-++++-+ +..+ ...|..|..+.+|-- .-.-|+++|...+.-..-|+-
T Consensus 119 li~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiE--Fe~~e~kK~E~~k~K--l~~qLeeEk~RHeqis~mLil 192 (561)
T KOG1103|consen 119 LIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIE--FEIEEKKKAEIAKDK--LEMQLEEEKKRHEQISLMLIL 192 (561)
T ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 356788888776655553 334444444433 3322 223344444444433 234566666666555444443
No 104
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.02 E-value=4.7e+02 Score=34.75 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=11.7
Q ss_pred CCCCccHHHHHHHH
Q 002622 408 PGDLCIRREYARWL 421 (899)
Q Consensus 408 Pn~pITRAEFARwL 421 (899)
.+.|+||.+|..+|
T Consensus 139 ~~~plt~~~l~~~l 152 (1353)
T TIGR02680 139 AGIPLTRDRLKEAL 152 (1353)
T ss_pred CCccCCHHHHHHHh
Confidence 47899999998765
No 105
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=63.68 E-value=80 Score=30.17 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHhHHHHhhhhcccchhhhhhhhhhHhh
Q 002622 862 QELQQSTAEFRSNLTEGAKRVAGDCREGVEK 892 (899)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~k 892 (899)
..+...+..+...+.....++...+-..++.
T Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~ 137 (202)
T PF01442_consen 107 SRLEEEVDELEESLESRSEELKEKIEERLEE 137 (202)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333333
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.82 E-value=2.6e+02 Score=31.40 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhHHH
Q 002622 606 SEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRRE 682 (899)
Q Consensus 606 ~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~---e~~~llKerAa~e~e~q~L~~Lr~E 682 (899)
-.++.|.++ ++|= -|.-++. .--...+++.++....+.+.|...-+. -+..+.+..+.+..|...|..+..|
T Consensus 123 K~~aRl~ak--~~WY-eWR~kll--egLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 123 KTFARLEAK--KMWY-EWRMKLL--EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHH--HHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345556664 6773 5776652 233444566666666666665543322 2336667778888888888777777
Q ss_pred HHHH-HHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHH
Q 002622 683 VEEQ-LESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE--------QAKAL 753 (899)
Q Consensus 683 Vde~-~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e--------~A~vL 753 (899)
++.- -.-|..-|-++......++..+.+++..++.+.++...++.-.+=...++.=+ .||.+..+ -..-|
T Consensus 198 ~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I-~~ae~~~~~~r~~t~~Ei~~L 276 (312)
T smart00787 198 LEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI-AEAEKKLEQCRGFTFKEIEKL 276 (312)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCHHHHHHH
Confidence 6441 11122223455556666666666666666666666666665444444444322 23444333 23334
Q ss_pred HHHhHHHh-hcCcEEE
Q 002622 754 EGARDRWE-RQGIKVV 768 (899)
Q Consensus 754 Eea~~rW~-~~gikv~ 768 (899)
..-.+-++ -+|++++
T Consensus 277 k~~~~~Le~l~g~~~~ 292 (312)
T smart00787 277 KEQLKLLQSLTGWKIT 292 (312)
T ss_pred HHHHHHHHHHhCCeeE
Confidence 44444444 5677754
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.68 E-value=2.4e+02 Score=30.92 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=29.8
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHH
Q 002622 662 LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK----EAENENQEIARLQYELEVERKALS 733 (899)
Q Consensus 662 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~----~~e~~~q~i~~~k~~LE~EkkAL~ 733 (899)
-.++..|+..|++.+-.=....+..+..| +.+.+.|++... .+......+...+..+|.|.+.+.
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l-------~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAEL-------MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666544333333333332 223333333333 333333344555555565555544
No 108
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=62.38 E-value=3.1e+02 Score=32.09 Aligned_cols=272 Identities=17% Similarity=0.192 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhHHHHHHHHHHhhh----
Q 002622 622 SFEKELSMEREKI-DVVEKMAEEARQELERLRAEREVDKIALMK----ERAAIESEMEILSKLRREVEEQLESLMS---- 692 (899)
Q Consensus 622 ~f~~el~~Er~~~-~~vek~~eea~~eLe~~r~ere~e~~~llK----erAa~e~e~q~L~~Lr~EVde~~q~L~s---- 692 (899)
.+-+.+..|..++ .+||..+.++-..|..--.+-+++...++. ..+-++..++-|..|..+|.+.++.=..
T Consensus 11 ~~~~~~~~e~~~i~~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~ 90 (473)
T PF14643_consen 11 KALESFHEELASISEEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKE 90 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665544 458888888887777666666666555543 3456677788888888877774433211
Q ss_pred -cceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHH--------------HhHHHHHHHHHHHHH
Q 002622 693 -NKVEISYEKERINMLRKEAENENQEIARLQYELEVERK------ALSMAR--------------AWAEDEAKRAREQAK 751 (899)
Q Consensus 693 -~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ekk------AL~m~R--------------sWaEdEA~r~~e~A~ 751 (899)
..-=-..|++|..+|..-+..-...+.+.=+.+..|.+ |..|=. .-.+.+-++-+....
T Consensus 91 l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~ 170 (473)
T PF14643_consen 91 LDEDLEELEKERADKLKKVLRKYVEILEKIAHLLPPDVERLIEKEAMEINQALLGNRRAYADLFANLMEAELQRELSYRR 170 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11113578899999988888888877777666654433 332211 112222223333344
Q ss_pred HHHHHhHHHhhcCcEEEEcC---CcccccccchhhhhcccccchHHHHHhHHHHHHH----HHHhhhhc-ccchHHHHHH
Q 002622 752 ALEGARDRWERQGIKVVVDK---DLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDK----LKAMANDV-SGKSKEIINT 823 (899)
Q Consensus 752 vLEea~~rW~~~gikv~vd~---~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~k----lk~m~~~~-~~~~~~~~~~ 823 (899)
-.+...++|+..--...|.. .+.-+..-.|..+ ..-++.-...-..|..+ |..+..-. ...++.-+.+
T Consensus 171 ~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~----~~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~e 246 (473)
T PF14643_consen 171 RWQDRVDDWRALRHERAIQEFREFMASEEFQNPPER----KQLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEE 246 (473)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 45666777775433333221 1111111111111 11111111112222222 22222111 3555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhh-hhhhhhhHhhhhhhc
Q 002622 824 IIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRV-AGDCREGVEKLTQRF 897 (899)
Q Consensus 824 ~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~-~~~c~~gv~k~~~rf 897 (899)
.+..+..+-..+-++......+.....+.....+...++.+++...+++..-.+.+-.+ ...|-.-|+++-++|
T Consensus 247 W~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~ 321 (473)
T PF14643_consen 247 WYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEF 321 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777888888888899999999999999888766666554 356766666655554
No 109
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.83 E-value=2e+02 Score=33.03 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002622 621 ESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM 663 (899)
Q Consensus 621 ~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~ll 663 (899)
+-|.--+..=+.....++..+.+++..|+++..+..+.+..+-
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555556788888999999999999999888777665443
No 110
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.31 E-value=3.3e+02 Score=32.12 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHhHHHHHHHHHHhhhc
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEM--EILSKLRREVEEQLESLMSN 693 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~--q~L~~Lr~EVde~~q~L~s~ 693 (899)
+..+.+.|+++|..|=++..+ .+.++..++|...+.+.+++....++++-.-|... .-|..|+..|.++- ..+..
T Consensus 320 ~~~l~~~~~~~L~~eL~~~~~--~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le-~~~~~ 396 (582)
T PF09731_consen 320 REELEEKYEEELRQELKRQEE--AHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALE-EALDA 396 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 455666666666665333222 24555566777777777777777776665544432 23556666666543 34555
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHH
Q 002622 694 KVEISYEKERINMLRKEAENENQEIARL----QYELEVERKALSM 734 (899)
Q Consensus 694 kvei~~Ek~~l~kL~~~~e~~~q~i~~~----k~~LE~EkkAL~m 734 (899)
+.++..+..+++.|..-+..=...+..- .--|..|-.+|.-
T Consensus 397 ~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 397 RSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHH
Confidence 6677777777887776666655555444 1334445455443
No 111
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.81 E-value=30 Score=39.53 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 002622 650 RLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 690 (899)
Q Consensus 650 ~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 690 (899)
++|..++++...+.+++++|..-.|.|..-..|+++|.++|
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etL 258 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETL 258 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 44555666666777777777777777776666666666555
No 112
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=60.47 E-value=36 Score=41.20 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHH
Q 002622 665 ERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 703 (899)
Q Consensus 665 erAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~ 703 (899)
||-.||||+|-|-+-|-| +++|--+|+.|+.|+.+
T Consensus 654 erlrle~qRQrLERErmE----rERLEreRM~ve~eRr~ 688 (940)
T KOG4661|consen 654 ERLRLERQRQRLERERME----RERLERERMKVEEERRD 688 (940)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 445688888888776655 45777778888776543
No 113
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.97 E-value=4.2e+02 Score=33.05 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHhhhcceehh-hHHHHHHH
Q 002622 678 KLRREVEEQLESLMSNKVEIS-YEKERINM 706 (899)
Q Consensus 678 ~Lr~EVde~~q~L~s~kvei~-~Ek~~l~k 706 (899)
.|..-++.+++.+....=..+ +|++-.++
T Consensus 611 ~L~~R~~~vl~~l~~~~P~LS~AEr~~~~E 640 (717)
T PF10168_consen 611 KLMKRVDRVLQLLNSQLPVLSEAEREFKKE 640 (717)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 455567888888865433333 45544333
No 114
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.35 E-value=3.8e+02 Score=32.94 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 002622 609 SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 688 (899)
Q Consensus 609 ~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 688 (899)
+++.-+++|+++. ++++ =.+.-+.++-+.+...|.+++|-+..+..+++- |- |-.|+.-..+|++.--+-+.
T Consensus 420 ~d~i~~le~e~~~-y~de----~~kaqaevdrlLeilkeveneKnDkdkkiaele--r~-~kdqnkkvaNlkHk~q~Ekk 491 (654)
T KOG4809|consen 420 ADQIKQLEKEASY-YRDE----CGKAQAEVDRLLEILKEVENEKNDKDKKIAELE--RH-MKDQNKKVANLKHKQQLEKK 491 (654)
T ss_pred HHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHhhhccccchhhhcC--ch-hhhhhhHHhhHHHHHHHHHH
Confidence 4455666777763 3433 344556666777888999999988877766654 22 22233333344443333333
Q ss_pred HhhhcceehhhHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHHHHHHH---HHHHHHHHHHhH
Q 002622 689 SLMSNKVEISYEKERINMLRKE--AENENQEIARLQYELEVERKALSMAR-AWAEDEAKRA---REQAKALEGARD 758 (899)
Q Consensus 689 ~L~s~kvei~~Ek~~l~kL~~~--~e~~~q~i~~~k~~LE~EkkAL~m~R-sWaEdEA~r~---~e~A~vLEea~~ 758 (899)
.-+-.-++|-.+.+.+-.-+.. ++...-++.++|.+|++=+--|++.| +-+|.|+--+ ++|-+.||++-.
T Consensus 492 k~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~errk~Lee~le 567 (654)
T KOG4809|consen 492 KNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILE 567 (654)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555544222221 44455566677777777666666664 5566665443 356667777643
No 115
>PRK04863 mukB cell division protein MukB; Provisional
Probab=58.22 E-value=6.3e+02 Score=34.29 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 002622 699 YEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGAR 757 (899)
Q Consensus 699 ~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~ 757 (899)
.-++.+.++..+++.-.+++..++..+.....++..+ +.++..-+.....|+.|.
T Consensus 373 eleeeleeleeEleelEeeLeeLqeqLaelqqel~el----Q~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 373 EADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQ----QTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554444433343333 334444455555555553
No 116
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=58.03 E-value=2.1e+02 Score=28.85 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 002622 655 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 711 (899)
Q Consensus 655 re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~ 711 (899)
|..-.+.+...|..+..+.++|..+..++-+.|..+..+ +| +.-|.+|..+.
T Consensus 61 r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--~y---~~~l~~li~~~ 112 (188)
T PRK02292 61 QELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--KR---EELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hH---HHHHHHHHHhc
Confidence 444445667777899999999999999999999998875 22 56677777665
No 117
>PLN03188 kinesin-12 family protein; Provisional
Probab=57.30 E-value=6.2e+02 Score=33.95 Aligned_cols=100 Identities=24% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhHHHhhcCcEEEEcCCcccccccchhh
Q 002622 706 MLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA--KRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMW 783 (899)
Q Consensus 706 kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA--~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w 783 (899)
.|+-|+|.-.--..+++.||+.||+.---| +|| +.++=|||.||.--+==++|
T Consensus 1069 elr~eles~r~l~Ekl~~EL~~eK~c~eel-----~~a~q~am~ghar~~e~ya~l~ek~-------------------- 1123 (1320)
T PLN03188 1069 ELRTELDASRALAEKQKHELDTEKRCAEEL-----KEAMQMAMEGHARMLEQYADLEEKH-------------------- 1123 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 667788887777788999999998643222 122 22455777777633222221
Q ss_pred hhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 002622 784 VNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKW 838 (899)
Q Consensus 784 ~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~ 838 (899)
..+-.--.|-+.=|+-.|.-|++...|-++ .+||.-+--=||.||-.
T Consensus 1124 ------~~ll~~hr~i~egi~dvkkaaakag~kg~~--~~f~~alaae~s~l~~e 1170 (1320)
T PLN03188 1124 ------IQLLARHRRIQEGIDDVKKAAARAGVRGAE--SKFINALAAEISALKVE 1170 (1320)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHHHH
Confidence 122222233366677778888877777776 67777777777777643
No 118
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.27 E-value=5.6e+02 Score=33.43 Aligned_cols=101 Identities=28% Similarity=0.331 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhHH--HHH---HHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 002622 621 ESFEKELSMEREKID--VVE---KMAEEARQELERLRAEREVDK-------IALMKERAAIESEMEILSKLRREVEEQLE 688 (899)
Q Consensus 621 ~~f~~el~~Er~~~~--~ve---k~~eea~~eLe~~r~ere~e~-------~~llKerAa~e~e~q~L~~Lr~EVde~~q 688 (899)
+.-|+||-+||---. +|| ...++.-.+||=||+|.++-= ..-+| .+|-|++- || +
T Consensus 316 aTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk---qlEqqN~r---LK-------d 382 (1243)
T KOG0971|consen 316 ATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK---QLEQQNAR---LK-------D 382 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH---HHHHHHHH---HH-------H
Confidence 356778877773322 222 223444556666666655431 01111 23444332 22 2
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002622 689 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM 734 (899)
Q Consensus 689 ~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m 734 (899)
.|.--|=--+.||+-.|||++++|.+|.++.+++..-|-=+.=+.+
T Consensus 383 alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 383 ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2222233445688999999999999999999887765543333333
No 119
>PRK03918 chromosome segregation protein; Provisional
Probab=57.19 E-value=4.5e+02 Score=32.28 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002622 634 IDVVEKMAEEARQELERL 651 (899)
Q Consensus 634 ~~~vek~~eea~~eLe~~ 651 (899)
...+++-+.....+++++
T Consensus 202 ~~~l~~ei~~l~~e~~~l 219 (880)
T PRK03918 202 LEEVLREINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444443333333333
No 120
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.55 E-value=4.2e+02 Score=31.75 Aligned_cols=20 Identities=0% Similarity=-0.160 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHcccchhh
Q 002622 568 KPVTNAQAAVALAIGEASDA 587 (899)
Q Consensus 568 KPVTRAEAAAaL~~G~~~e~ 587 (899)
..-+|.|-+++.++..|=|-
T Consensus 245 ~SrlkqEnlqLvhR~h~LEE 264 (502)
T KOG0982|consen 245 SSRLKQENLQLVHRYHMLEE 264 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34578899988888877543
No 121
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.36 E-value=4.5e+02 Score=31.49 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002622 701 KERINMLRKEAENENQEIARLQYELEVERKALSMARA 737 (899)
Q Consensus 701 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~Rs 737 (899)
+.++-.-+...+.++++..++--+|--|++-|+|.-.
T Consensus 355 ~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl 391 (502)
T KOG0982|consen 355 RVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444667777777777777666666666543
No 122
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.21 E-value=6.3e+02 Score=33.08 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=14.8
Q ss_pred HhhcCcEEEEcCCcccccccchhhhhcc
Q 002622 760 WERQGIKVVVDKDLREESDAAVMWVNAG 787 (899)
Q Consensus 760 W~~~gikv~vd~~~~~~~~~~~~w~~~~ 787 (899)
|+.. |==|||..|=..+.=.|.|..++
T Consensus 552 We~t-IGKVid~eLL~r~dL~P~l~~~~ 578 (1201)
T PF12128_consen 552 WEQT-IGKVIDEELLYRTDLEPQLVEDS 578 (1201)
T ss_pred HHHH-hHhhCCHHHhcCCCCCCeecCCC
Confidence 7766 44455555555555555555443
No 123
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=54.08 E-value=4.6e+02 Score=31.53 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhH
Q 002622 640 MAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLR 680 (899)
Q Consensus 640 ~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr 680 (899)
.++....++.+.+.+.+++...+-+.|..++...|..-++.
T Consensus 221 ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~p 261 (489)
T PF05262_consen 221 EAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLP 261 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCc
Confidence 33333344444444444444444444444444444444433
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=54.08 E-value=39 Score=39.68 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=33.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCcccccccchhhhhcccccchHH
Q 002622 715 NQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQ 794 (899)
Q Consensus 715 ~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~~~~~~~~~~~ 794 (899)
.-+..++...||-|.|||+- +-|-. .+ -||.- .|+- -+-|++..++-++-++..+.+.|.+
T Consensus 185 Rre~V~lentlEQEqEalvN-~LwKr-----md----kLe~e-kr~L--------q~KlDqpvs~p~~prdia~~~~~~g 245 (552)
T KOG2129|consen 185 RREAVQLENTLEQEQEALVN-SLWKR-----MD----KLEQE-KRYL--------QKKLDQPVSTPSLPRDIAKIPDVHG 245 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHH-HHHHH-----HH----HHHHH-HHHH--------HHHhcCcccCCCchhhhhcCccccC
Confidence 34556677777888887753 45531 11 11111 1110 1124566667777777777776665
Q ss_pred H
Q 002622 795 T 795 (899)
Q Consensus 795 ~ 795 (899)
-
T Consensus 246 D 246 (552)
T KOG2129|consen 246 D 246 (552)
T ss_pred c
Confidence 3
No 125
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.05 E-value=1.7e+02 Score=26.40 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=55.6
Q ss_pred HHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 002622 793 DQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEF 871 (899)
Q Consensus 793 ~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (899)
...+...++.+..|..+...+......+-..|-..+..|+..|.+.-..+.....+...............+.......
T Consensus 13 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 13 RKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777788888888888888888888888888888888888888877776666555555555554444444443
No 126
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.74 E-value=6.4e+02 Score=33.05 Aligned_cols=150 Identities=18% Similarity=0.236 Sum_probs=96.1
Q ss_pred HHcccc-hhhHHHHHHHHHH-HHHhhHHHHhh----HHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHH
Q 002622 579 LAIGEA-SDAVNEELQRIEA-ESAAENAVSEH----SAL---VAEVEKEINESFEKELSMEREKIDVVEK---MAEEARQ 646 (899)
Q Consensus 579 L~~G~~-~e~v~eEL~RlEA-E~~a~~av~~~----~~l---~~~~~~di~~~f~~el~~Er~~~~~vek---~~eea~~ 646 (899)
.+.|.. =..+..||--|++ |..-+.+...- .-| ...+++|++++-+.+....+.+-.+.-+ .|++...
T Consensus 169 kAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ 248 (1072)
T KOG0979|consen 169 KAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDR 248 (1072)
T ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhH
Confidence 334444 4556777777764 33444444321 222 3344889988887766555443332222 1556666
Q ss_pred HHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 002622 647 ELERLRAERE---VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQY 723 (899)
Q Consensus 647 eLe~~r~ere---~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~ 723 (899)
|+..++.+++ ++.-.+.|+..-+++-++.|-+.++|.+..+..+.++ +-.=..++++....+...++.+.+++.
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~---~~e~~~k~~~~~ek~~~~~~~v~~~~~ 325 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE---LNEALAKVQEKFEKLKEIEDEVEEKKN 325 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766554 3455789999999999999999888888877666543 223345777777777788888888888
Q ss_pred HHHHHHHH
Q 002622 724 ELEVERKA 731 (899)
Q Consensus 724 ~LE~EkkA 731 (899)
.||.=|++
T Consensus 326 ~le~lk~~ 333 (1072)
T KOG0979|consen 326 KLESLKKA 333 (1072)
T ss_pred HHHHHHHH
Confidence 88775554
No 127
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=53.73 E-value=74 Score=38.21 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHH
Q 002622 663 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE 714 (899)
Q Consensus 663 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~ 714 (899)
+|-=+++..-++.|-.|+.|...+.+.+.+-+-++..+++.++....+++.-
T Consensus 208 ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 208 IKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3333455566677788888888888888888888888888777777777653
No 128
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=53.30 E-value=1.1e+02 Score=31.52 Aligned_cols=50 Identities=12% Similarity=0.316 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 002622 636 VVEKMAEEARQELERLRAE-REVDKIALMKERAAIESEMEILSKLRREVEEQL 687 (899)
Q Consensus 636 ~vek~~eea~~eLe~~r~e-re~e~~~llKerAa~e~e~q~L~~Lr~EVde~~ 687 (899)
+.|+.+.+|+.|..+++.+ |++-.++...+|+++|.+- -.-|.+|+.+|.
T Consensus 66 ~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L--~~~~~~~~~~~~ 116 (155)
T PRK06569 66 YYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDL--KNSINQNIEDIN 116 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 4566667778888888887 7777788888888887653 334556666664
No 129
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=53.11 E-value=1.4e+02 Score=33.23 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=28.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002622 716 QEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALE 754 (899)
Q Consensus 716 q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLE 754 (899)
.....+-.++++..+-|+.-.-|.++|.+++.+....|-
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~ 236 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLR 236 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556777777788877899999999888766653
No 130
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.09 E-value=1.5e+02 Score=36.42 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002622 697 ISYEKERINMLRKEAENENQEIARLQYELEVER 729 (899)
Q Consensus 697 i~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 729 (899)
|-.=..++.+|..+++++...+.+|+-.|+-=+
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333356788888888888888888888776544
No 131
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=51.96 E-value=5e+02 Score=31.22 Aligned_cols=49 Identities=29% Similarity=0.281 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH--HHhhhhHHHHHHh-HHHHhhhhccc
Q 002622 829 LLFISNLKKWASKASMRAAELKDATI--LKAKGSVQELQQS-TAEFRSNLTEG 878 (899)
Q Consensus 829 ~~~i~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 878 (899)
..-|..|.+.-.++.+.+..|-.|-. +|+.|.|-|+|.. +.+. +++.+|
T Consensus 171 ~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~-sGL~~~ 222 (475)
T PRK10361 171 AHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEA-SGLREG 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHH-hCCCcC
Confidence 33344555555666666666666643 4788999888754 4443 355444
No 132
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=51.82 E-value=4.6e+02 Score=31.42 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002622 666 RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 726 (899)
Q Consensus 666 rAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 726 (899)
|+.||.=+--|.+-..+--|-+++++-+++-+-.|-.|+|.++..-=.+.+++++.-+|-|
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5666666666666667777777777777777777777777655544445666666554443
No 133
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.77 E-value=1.6e+02 Score=35.54 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=33.1
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002622 673 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 733 (899)
Q Consensus 673 ~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 733 (899)
++-+..++.-|++.-+.=...=..+..=++.+++|.++++.+.+.+..++.+|+.+++.+.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444455555554444211111223344556667777777777777777777766666543
No 134
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=51.69 E-value=91 Score=31.93 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=71.7
Q ss_pred HHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHh
Q 002622 793 DQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFR 872 (899)
Q Consensus 793 ~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (899)
+..++...++.++|+.=..+-++...+++..+..+|.+--.-||..--++.+.+.++++.--+-+-..+++.|-.+.+++
T Consensus 37 d~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~ 116 (155)
T PF07464_consen 37 DSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVS 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666679999999999999999999999988899999988888877777778888888887777
Q ss_pred hhhcc-------cchhhhhhhhhhHhhhhh
Q 002622 873 SNLTE-------GAKRVAGDCREGVEKLTQ 895 (899)
Q Consensus 873 ~~~~~-------~~kr~~~~c~~gv~k~~~ 895 (899)
..+.. ..|.+.|+.-..+.++..
T Consensus 117 ~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~ 146 (155)
T PF07464_consen 117 ENSEGANEKLQPAIKQAYDDAVKAAQKVQK 146 (155)
T ss_dssp S---SS-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66433 344455555554444443
No 135
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=50.34 E-value=1.4e+02 Score=35.11 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhHHHh
Q 002622 703 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKR--AREQAKALEGARDRWE 761 (899)
Q Consensus 703 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r--~~e~A~vLEea~~rW~ 761 (899)
++-.|+.+.-..+++-.+-+-+-.++||++.-.|.=++.|+++ .+||++..++++.|-+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
T PRK00247 321 RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRA 381 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666677776777777777777889999999999999999988 7778888888777653
No 136
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.19 E-value=5.8e+02 Score=31.46 Aligned_cols=172 Identities=18% Similarity=0.163 Sum_probs=93.6
Q ss_pred cchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002622 583 EASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSME-REKIDVVEKMAEEARQELERLRAEREVDKIA 661 (899)
Q Consensus 583 ~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~E-r~~~~~vek~~eea~~eLe~~r~ere~e~~~ 661 (899)
.-..++..|+.++++.+-+-. ++.+.++++=.+ .+..+| +.....=...|+....+++--+...++.+..
T Consensus 228 ~~~~~i~~~ie~l~~~n~~l~------e~i~e~ek~~~~---~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~ 298 (581)
T KOG0995|consen 228 KYFTSIANEIEDLKKTNRELE------EMINEREKDPGK---EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHhcCcch---HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344567788888887662211 122222222111 111112 2223334456777778888888888888888
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 002622 662 LMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 741 (899)
Q Consensus 662 llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEd 741 (899)
+=+|-...|.|.|.|..-..++--+++. . .|+.+ -++++..+.+.-.+.+.+.+++++...+-+-=+-.-+++
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~---Q--~iS~~--dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIEL---Q--GISGE--DVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888888888765433333333221 1 33333 244555555555666666666666655544333333344
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCcEEEEc
Q 002622 742 EAKRAREQAKALEGARDRWERQGIKVVVD 770 (899)
Q Consensus 742 EA~r~~e~A~vLEea~~rW~~~gikv~vd 770 (899)
=++-..-...-+-...+|-...++..-++
T Consensus 372 ~f~~le~~~~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 372 FFKELEKKFIDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444445555666667766665555555
No 137
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.00 E-value=1.2e+02 Score=39.17 Aligned_cols=77 Identities=29% Similarity=0.384 Sum_probs=50.6
Q ss_pred HHHHhHHHHHHHHHHhhh-cceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH---HHHHHHHH
Q 002622 675 ILSKLRREVEEQLESLMS-NKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE---AKRAREQA 750 (899)
Q Consensus 675 ~L~~Lr~EVde~~q~L~s-~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdE---A~r~~e~A 750 (899)
+...||+|||.....|.+ ++.+.-.=+++++++.+-++. |--+|-|.= -.-++||.
T Consensus 365 virElReEve~lr~qL~~ae~~~~~el~e~l~esekli~e--------------------i~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKE--------------------ITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH--------------------HHhHHHHHHHHHHHHHHHHH
Confidence 455689999999888887 555555555555554443332 122332211 12357888
Q ss_pred HHHHHHhHHHhhcCcEEEEcC
Q 002622 751 KALEGARDRWERQGIKVVVDK 771 (899)
Q Consensus 751 ~vLEea~~rW~~~gikv~vd~ 771 (899)
+-||.++...+--||||-=|+
T Consensus 425 ~~L~~~gis~~~sgikv~dDK 445 (1714)
T KOG0241|consen 425 AQLESMGISLENSGIKVGDDK 445 (1714)
T ss_pred HHHHHHHHHHhcccccccccc
Confidence 899999999999999986555
No 138
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.75 E-value=1.7e+02 Score=31.72 Aligned_cols=43 Identities=30% Similarity=0.370 Sum_probs=28.2
Q ss_pred hHHHHHHHHH-------HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002622 587 AVNEELQRIE-------AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKI 634 (899)
Q Consensus 587 ~v~eEL~RlE-------AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~ 634 (899)
.+.+|+.|.+ .|.++++-.+++.+|++ +|+-|-..+-.+|...
T Consensus 81 ~fr~Ev~r~~e~~~g~~ie~~~e~eaaE~~el~a-----~N~a~N~~~~~~R~~R 130 (227)
T KOG4691|consen 81 EFRSEVQRVHEARAGVLIERKAEKEAAEHRELMA-----WNQAENRRLHELRIAR 130 (227)
T ss_pred HHHHHHHHHHhhcchhHHHhhhhhHHHHHHHHHH-----HhHHHHHHHHHHHHHH
Confidence 4667777754 45556666666777775 5788887777666543
No 139
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=49.58 E-value=4.2e+02 Score=30.64 Aligned_cols=50 Identities=32% Similarity=0.442 Sum_probs=40.4
Q ss_pred HHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 002622 685 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 741 (899)
Q Consensus 685 e~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEd 741 (899)
+|++.|++-++ +.-=++.++||+.+++..++++..++..+.. |.--|.+|
T Consensus 375 ~q~~yLL~m~L-~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~------~~~l~~~d 424 (426)
T PF00521_consen 375 EQADYLLSMPL-RRLTKEEIEKLQKEIKELEKEIEELEKILPK------IKDLWKKD 424 (426)
T ss_dssp HHHHHHHTSBG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHH
T ss_pred HHHHHHHhchH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 88999998888 4444688899999999999999999998877 55556654
No 140
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=49.38 E-value=2.8e+02 Score=27.55 Aligned_cols=80 Identities=30% Similarity=0.483 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 002622 611 LVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 690 (899)
Q Consensus 611 l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 690 (899)
++++.+.+.++...+- +++....++..++.+..+++..+. |..-.+.+-..+.-+....+++..+..+|.+.|..+
T Consensus 13 I~~eA~~e~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~ 88 (198)
T PF01991_consen 13 IIAEAQEEAEKILEEA---EEEAEKEIEEIIEKAEKEAEQEKE-REISKAELEARRELLEAKQEIIDEVFEEVKEKLKSF 88 (198)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444432 233333345555556666655544 233334444555677777788888888887777777
Q ss_pred hhcc
Q 002622 691 MSNK 694 (899)
Q Consensus 691 ~s~k 694 (899)
....
T Consensus 89 ~~~~ 92 (198)
T PF01991_consen 89 SKDP 92 (198)
T ss_dssp TCCC
T ss_pred hcCH
Confidence 6665
No 141
>PF14992 TMCO5: TMCO5 family
Probab=48.60 E-value=2.9e+02 Score=31.10 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHhHHHHHHHHHHhhhccee----hhhHHHHHHHHHHHHHHHHHHHH
Q 002622 648 LERLRAEREVDKIALMKERAAIESEMEIL----SKLRREVEEQLESLMSNKVE----ISYEKERINMLRKEAENENQEIA 719 (899)
Q Consensus 648 Le~~r~ere~e~~~llKerAa~e~e~q~L----~~Lr~EVde~~q~L~s~kve----i~~Ek~~l~kL~~~~e~~~q~i~ 719 (899)
+...-.+++.++-.|-.+.|-+|.+++.| ..|.++++++...+-.++-. .-.=+.++|+++..+......+.
T Consensus 54 e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~ 133 (280)
T PF14992_consen 54 EDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIA 133 (280)
T ss_pred HhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHH
Confidence 33334467777777778889999999999 89999999998886444321 22224788899888888888887
Q ss_pred HhhHHHHH
Q 002622 720 RLQYELEV 727 (899)
Q Consensus 720 ~~k~~LE~ 727 (899)
.+.+...-
T Consensus 134 kve~d~~~ 141 (280)
T PF14992_consen 134 KVEDDYQQ 141 (280)
T ss_pred HHHHHHHH
Confidence 77654433
No 142
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=48.37 E-value=1.1e+02 Score=34.50 Aligned_cols=84 Identities=23% Similarity=0.444 Sum_probs=59.2
Q ss_pred HHHHh-hHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhH
Q 002622 603 NAVSE-HSALVAEVEKEINESFEKE-LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLR 680 (899)
Q Consensus 603 ~av~~-~~~l~~~~~~di~~~f~~e-l~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr 680 (899)
.||.. +.--+-.++.+||+-+-.| |+--|-+ +|++++|.+.++--.-..+++ +|-++|-.|-+|-++..++|
T Consensus 81 dav~GP~INSL~~lQq~vn~aY~sEv~kL~~~~---~ERn~~Er~~~iTt~~qq~ee---~Le~k~~~is~qL~~~~~~r 154 (385)
T PF15642_consen 81 DAVLGPKINSLTELQQKVNGAYGSEVIKLDRGR---SERNHEERRKKITTSHQQHEE---ALEKKKEDISRQLQVIPKHR 154 (385)
T ss_pred hhhcCcccchHHHHHHHHHhhhhHHHHHHHHhH---HHhhHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHhcchhhh
Confidence 34443 3334556688999999877 5554443 688888888877666655554 45678888888888888888
Q ss_pred HHHHHHHHHhhh
Q 002622 681 REVEEQLESLMS 692 (899)
Q Consensus 681 ~EVde~~q~L~s 692 (899)
-|+-.+++-|+.
T Consensus 155 ~EL~~~~~~l~~ 166 (385)
T PF15642_consen 155 VELKQKQDDLTK 166 (385)
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
No 143
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.32 E-value=2.5e+02 Score=30.62 Aligned_cols=10 Identities=20% Similarity=-0.024 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002622 415 REYARWLVSA 424 (899)
Q Consensus 415 AEFARwLVRA 424 (899)
.|-.+++-.|
T Consensus 39 ~e~~~A~~~A 48 (297)
T PF02841_consen 39 AENRAAVEKA 48 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 144
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=48.23 E-value=2.9e+02 Score=29.75 Aligned_cols=96 Identities=23% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHH-HHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002622 657 VDKIALMKERAAIESE-MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 735 (899)
Q Consensus 657 ~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 735 (899)
+++..++||||.||.+ -.-|.+|-..... ..++-.=+.-+..++.+++..-..=..+...|..|-+-|.-.
T Consensus 22 ~el~~f~keRa~iE~~Yak~L~kl~kk~~~--------~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~f 93 (242)
T cd07671 22 KDVEELLKQRAQAEERYGKELVQIARKAGG--------QTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEEF 93 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 002622 736 RAWAEDEAKRAREQAKALEGARDRWERQ 763 (899)
Q Consensus 736 RsWaEdEA~r~~e~A~vLEea~~rW~~~ 763 (899)
+.|-.++-|+.. -..+.+...|..+
T Consensus 94 ~~~qke~rK~~e---~~~eK~qk~~~~~ 118 (242)
T cd07671 94 RERQKEQRKKYE---AVMERVQKSKVSL 118 (242)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHH
No 145
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.97 E-value=6.9e+02 Score=31.73 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc
Q 002622 793 DQTVSRAQSLVDKLKAMANDVS 814 (899)
Q Consensus 793 ~~~~~ra~~l~~klk~m~~~~~ 814 (899)
.......+-|+.+|..|-...+
T Consensus 254 ~~~~~~~~~l~~~l~~~eeEnk 275 (769)
T PF05911_consen 254 QKRSKESEFLTERLQAMEEENK 275 (769)
T ss_pred ccchhhhHHHHHHHHHHHHHHH
Confidence 4445556777777777755543
No 146
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.55 E-value=5.5e+02 Score=30.48 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=35.6
Q ss_pred HHHHhhhcceehhhHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHH---HhHHHHHHHHH
Q 002622 686 QLESLMSNKVEISYEKERINMLR-----------KEAENENQEIARLQYELEVERKALSMAR---AWAEDEAKRAR 747 (899)
Q Consensus 686 ~~q~L~s~kvei~~Ek~~l~kL~-----------~~~e~~~q~i~~~k~~LE~EkkAL~m~R---sWaEdEA~r~~ 747 (899)
.+..|+-.+..|..|+..+..++ ..++.+.+-+.++..+|+.+.+=|.-|+ +=++++-.+..
T Consensus 169 ~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 169 TLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455666677777777666444 3444555555666666776666666665 33444444444
No 147
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=47.07 E-value=1.2e+02 Score=32.63 Aligned_cols=95 Identities=24% Similarity=0.240 Sum_probs=54.8
Q ss_pred hcccccccccCCCCcchHHHHHHHHhcccccceeeccCCCCccCCCCCCcHHHHHHHHHcccchhhHHHHHHHH------
Q 002622 522 LYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRI------ 595 (899)
Q Consensus 522 l~~~sgFtDadkI~~wA~~AVaadL~aGdqsIIr~vfG~tg~FqPnKPVTRAEAAAaL~~G~~~e~v~eEL~Rl------ 595 (899)
.+.-..|.|.+.+|.|+..-= ...++|+.|||+++++++= +-|.-|
T Consensus 63 ~yNRyaf~D~d~LP~WF~eDE------------------~kH~k~~~Pvtke~v~~~k----------~k~~einaRPIK 114 (215)
T PF07780_consen 63 SYNRYAFNDDDGLPDWFVEDE------------------KKHNKPQLPVTKEEVAEYK----------EKLREINARPIK 114 (215)
T ss_pred hccccccCCCCCCchhHHHHH------------------HhhcCCCCCCCHHHHHHHH----------HHHHHHcCCchH
Confidence 355677999989999987652 2468899999999887642 222111
Q ss_pred -HHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002622 596 -EAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEAR 645 (899)
Q Consensus 596 -EAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~ 645 (899)
-+|.-||.---+. .-++++++=....-+..=-.|+++...++++|--|.
T Consensus 115 KV~EAkaRKK~Ra~-kklek~kkKa~~I~~~~d~se~eK~~~i~kl~kka~ 164 (215)
T PF07780_consen 115 KVAEAKARKKRRAA-KKLEKAKKKAEAIADDEDMSEREKAKQIKKLYKKAK 164 (215)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCcCCChHHHHHHHHHHHHHhh
Confidence 2344444322221 122333333333333333347888888888885543
No 148
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.51 E-value=8.3e+02 Score=32.25 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhh
Q 002622 669 IESEMEILSKLRREVEEQLESLMS 692 (899)
Q Consensus 669 ~e~e~q~L~~Lr~EVde~~q~L~s 692 (899)
|..-.+-+..|+..|++....+..
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~ 817 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQG 817 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455566666666666655553
No 149
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.98 E-value=2.9e+02 Score=26.87 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHH
Q 002622 640 MAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIA 719 (899)
Q Consensus 640 ~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~ 719 (899)
.+.+|....+++=.-+-.....|-+=|+.+..-...+..|+.+++..-..|...+.....++..|++=..+++.+.+.+.
T Consensus 39 ~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 39 IAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444555555666666667777778888777777777777777777777777777777766665
Q ss_pred H
Q 002622 720 R 720 (899)
Q Consensus 720 ~ 720 (899)
.
T Consensus 119 ~ 119 (132)
T PF07926_consen 119 E 119 (132)
T ss_pred H
Confidence 4
No 150
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.87 E-value=4.3e+02 Score=28.72 Aligned_cols=88 Identities=23% Similarity=0.301 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002622 654 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 733 (899)
Q Consensus 654 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 733 (899)
+=++-+..++++=..++.|-..|..++.|.+..++ |+.+..+-+.++..+...|..+-..++.|++.
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~-----------Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~-- 78 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQ-----------ERMAHVEELRQINQDINTLENIIKQAESERNK-- 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45566678888888899999999988888887654 44444444455555554444444444444443
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHH
Q 002622 734 MARAWAEDEAKRAREQAKALEGARDR 759 (899)
Q Consensus 734 m~RsWaEdEA~r~~e~A~vLEea~~r 759 (899)
.++.+.+.++.-.-|..-.++
T Consensus 79 -----~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 79 -----RQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444433333
No 151
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.79 E-value=1.5e+02 Score=34.65 Aligned_cols=40 Identities=13% Similarity=-0.036 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH
Q 002622 703 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE 742 (899)
Q Consensus 703 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdE 742 (899)
.+.++..-+..+..++.....+|+.+.+.|.--...+++|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555444444443
No 152
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.46 E-value=6.1e+02 Score=30.39 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhh--------hHHHHHHHHHHHh
Q 002622 610 ALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK--IALMKER--------AAIESEMEILSKL 679 (899)
Q Consensus 610 ~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~--~~llKer--------Aa~e~e~q~L~~L 679 (899)
+-+..+...|...++ -|..|-.-...|++........|...+..-..-. ...|+++ ..+..=.+-|..|
T Consensus 282 ~~~~~i~~~Id~Lyd-~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~L 360 (569)
T PRK04778 282 EKNEEIQERIDQLYD-ILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESL 360 (569)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHH
Confidence 344455567765554 4555655555566555555555544444222222 2223333 1122333457778
Q ss_pred HHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHH
Q 002622 680 RREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEI 718 (899)
Q Consensus 680 r~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i 718 (899)
..++++..+.+....+.|+.=++++++|.++++.=....
T Consensus 361 e~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq 399 (569)
T PRK04778 361 EKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQ 399 (569)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877777777766654433333
No 153
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=45.35 E-value=6e+02 Score=32.34 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002622 678 KLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 733 (899)
Q Consensus 678 ~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 733 (899)
+|-.-|||+||--.-++..-..++++|..-...+....+++..-|--|--.++.|+
T Consensus 195 rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr 250 (916)
T KOG0249|consen 195 RLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLR 250 (916)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45566777776555555555555555544444444444444444444444444443
No 154
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.26 E-value=6.2e+02 Score=30.43 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH
Q 002622 702 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA 743 (899)
Q Consensus 702 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA 743 (899)
+.|++..+.++.-+..=.+-...|..|.+-|.-+-.=+-.||
T Consensus 147 e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea 188 (475)
T PRK10361 147 EQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEA 188 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444455556666655554444344443
No 155
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=44.98 E-value=5.4e+02 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHH
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 713 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~ 713 (899)
|..|+.++.++..+...+--.|..=+..|+.|+..+..
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 55566666666665555555555555555555555433
No 156
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=44.82 E-value=4.4e+02 Score=28.57 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=8.0
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 002622 716 QEIARLQYELEVERKALS 733 (899)
Q Consensus 716 q~i~~~k~~LE~EkkAL~ 733 (899)
.++..++..+.....+|.
T Consensus 196 ~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 196 AELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 444444444444444443
No 157
>PRK02224 chromosome segregation protein; Provisional
Probab=44.66 E-value=7e+02 Score=30.85 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=28.1
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 002622 696 EISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 741 (899)
Q Consensus 696 ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEd 741 (899)
++..+..+++. ..+++.+.+.+..-..+|+.+++.|.-.|.=+.+
T Consensus 583 ~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 627 (880)
T PRK02224 583 ELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELNDERRE 627 (880)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666664 5666666666666666777777666666553333
No 158
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.22 E-value=3.4e+02 Score=28.34 Aligned_cols=49 Identities=27% Similarity=0.405 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 002622 707 LRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWER 762 (899)
Q Consensus 707 L~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~ 762 (899)
|+.+++.-.+++.+++.+|+ -.+.|=-+.-.+.++....+-+|-.||..
T Consensus 108 ~l~~l~~l~~~~~~l~~el~-------~~~~~Dp~~i~~~~~~~~~~~~~anrwTD 156 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE-------KYSENDPEKIEKLKEEIKIAKEAANRWTD 156 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444455555554 23445555556666677777788888863
No 159
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.91 E-value=3.9e+02 Score=31.79 Aligned_cols=88 Identities=22% Similarity=0.187 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002622 585 SDAVNEELQRIEAESAAENAVSEH-SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM 663 (899)
Q Consensus 585 ~e~v~eEL~RlEAE~~a~~av~~~-~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~ll 663 (899)
...+++++.-++||.-|-.|-... ...+.+++.|.. .+.+||-+.++-+++.-.=..-++++|..-..+.-++-
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~-----~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENT-----QLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444432 222333333332 23345555555555554444444555544444444444
Q ss_pred hhhhHHHHHHHHHH
Q 002622 664 KERAAIESEMEILS 677 (899)
Q Consensus 664 KerAa~e~e~q~L~ 677 (899)
+.+|..+.-+-.|.
T Consensus 104 ~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 104 EQKAEFENAELALR 117 (459)
T ss_pred HhhhhhccchhhHH
Confidence 44444444333333
No 160
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=43.82 E-value=7.1e+02 Score=30.69 Aligned_cols=71 Identities=28% Similarity=0.274 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHh
Q 002622 667 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALSMARAW 738 (899)
Q Consensus 667 Aa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e---~~~q~i~~~k~~LE~EkkAL~m~RsW 738 (899)
+-+|-|+++|-.|..|.+-+ ++..-.+-.|..=+++.++-+.+.+ .++|+..+-|-.+|.|++-.-.+|.-
T Consensus 183 r~~e~Q~qv~qsl~~el~~i-~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~ 256 (591)
T KOG2412|consen 183 RLLEEQNQVLQSLDTELQAI-QREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIRAE 256 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33666777777766544322 1111111222222222233333333 34667777777777777777777754
No 161
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=42.60 E-value=2.9e+02 Score=25.84 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh
Q 002622 621 ESFEKELSMEREKIDVVEKMAEEARQELERLRA--EREVDKIALMKE 665 (899)
Q Consensus 621 ~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~--ere~e~~~llKe 665 (899)
....-|+..+..+.++++|.......|+.+|+. .+..+...-|++
T Consensus 34 ~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 34 LRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555566666777777777777777766665 344444444544
No 162
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.59 E-value=4.7e+02 Score=28.29 Aligned_cols=74 Identities=41% Similarity=0.453 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHH
Q 002622 641 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 720 (899)
Q Consensus 641 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~ 720 (899)
+++....|+..+.+-+.++..|-.+...-+.+++.|..=..|.. ..+..|..+.+.+..+..+
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~-----------------~~i~~l~ee~~~ke~Ea~~ 107 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE-----------------AEIARLEEESERKEEEAEE 107 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544444444444333222222 2345555666666667777
Q ss_pred hhHHHHHHHHH
Q 002622 721 LQYELEVERKA 731 (899)
Q Consensus 721 ~k~~LE~EkkA 731 (899)
++.+|+.=+++
T Consensus 108 lq~el~~ar~~ 118 (246)
T PF00769_consen 108 LQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666544333
No 163
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=42.41 E-value=2.5e+02 Score=32.47 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=54.0
Q ss_pred HHHHHHHHH-------hhhcceehhhHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002622 681 REVEEQLES-------LMSNKVEISYEKERINMLRKEAENEN----QEIARLQYELEVERKALSMARAWAEDEAKRAREQ 749 (899)
Q Consensus 681 ~EVde~~q~-------L~s~kvei~~Ek~~l~kL~~~~e~~~----q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~ 749 (899)
.||+|-|+. |-.+|...+|+-+.|...+.+.+... -+-.++-+++|++|-+.++|-.=.++=-.--+.|
T Consensus 122 ~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 122 SEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred HHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554 33677777777666666655555433 3345677899999999999975444322223344
Q ss_pred HHHHHHHhHHHhhcCcEEEEcCCcc
Q 002622 750 AKALEGARDRWERQGIKVVVDKDLR 774 (899)
Q Consensus 750 A~vLEea~~rW~~~gikv~vd~~~~ 774 (899)
-..||+ +|..++-++--+
T Consensus 202 deliee-------~Gl~~I~~~t~~ 219 (405)
T KOG2010|consen 202 DELIEE-------HGLVIIPDGTPN 219 (405)
T ss_pred HHHHHH-------cCeEeccCCCCC
Confidence 556665 888777665433
No 164
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=41.33 E-value=6.7e+02 Score=29.70 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhcccchHH------HHHHHHHHHHHHHH
Q 002622 800 QSLVDKLKAMANDVSGKSKE------IINTIIHKILLFIS 833 (899)
Q Consensus 800 ~~l~~klk~m~~~~~~~~~~------~~~~~~~~i~~~i~ 833 (899)
..|.++...++..++..+.- ++..++.++.+++-
T Consensus 469 ~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~ 508 (582)
T PF09731_consen 469 AQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLL 508 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheee
Confidence 34666666666665543332 45555555544443
No 165
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=40.84 E-value=4.1e+02 Score=27.06 Aligned_cols=95 Identities=23% Similarity=0.259 Sum_probs=40.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHH
Q 002622 626 ELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERIN 705 (899)
Q Consensus 626 el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~ 705 (899)
+|++=+.+..-++..++.+..||+...++++.-....-..|+.+++=.+-|.-+..+ +.+|-.+=+.+.-|++.|.
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~e----l~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSE----LNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555554444333333344433322222222222 1222223333445555555
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 002622 706 MLRKEAENENQEIARLQYE 724 (899)
Q Consensus 706 kL~~~~e~~~q~i~~~k~~ 724 (899)
+.+.+.+.+-.++.-..+.
T Consensus 87 k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 87 KELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 5555444444444443333
No 166
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=40.58 E-value=4.4e+02 Score=33.40 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002622 701 KERINMLRKEAENENQEIAR 720 (899)
Q Consensus 701 k~~l~kL~~~~e~~~q~i~~ 720 (899)
+++|++|..++..+.+.+.+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ 667 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIR 667 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 67777777777777776655
No 167
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=40.22 E-value=4e+02 Score=30.61 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002622 621 ESFEKELSMERE------KIDVVEKMAEEARQELERLRAEREVDK 659 (899)
Q Consensus 621 ~~f~~el~~Er~------~~~~vek~~eea~~eLe~~r~ere~e~ 659 (899)
--|++.+++.|. +-+++||+-+.+.+ ++++.|+.+
T Consensus 50 dk~deqiKaKkkLmV~aKkheaL~kl~eSaeq----e~aekEkrK 90 (421)
T KOG4429|consen 50 DKKDEQIKAKKKLMVLAKKHEALEKLEESAEQ----EKAEKEKRK 90 (421)
T ss_pred hhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH----hhcchHHHH
Confidence 368888888774 44566666655543 344445333
No 168
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.08 E-value=1e+02 Score=34.74 Aligned_cols=62 Identities=29% Similarity=0.432 Sum_probs=0.0
Q ss_pred hhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 002622 690 LMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 758 (899)
Q Consensus 690 L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~ 758 (899)
|--..|-|-.=|-+|-+-...++...-+|.+||+.|- +|=-.|+|+|.-|+.++- +|.|||.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~------RMrEDWIEEECHRVEAQL-ALKEARk 124 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLA------RMREDWIEEECHRVEAQL-ALKEARK 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHH
No 169
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.71 E-value=5.1e+02 Score=27.86 Aligned_cols=70 Identities=29% Similarity=0.353 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 002622 617 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 686 (899)
Q Consensus 617 ~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~ 686 (899)
+++...|+.+|..=|..+..+-+--..+..++.+++.+-+.-+..+-++.+....=...|..||.++|+-
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~ 115 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEE 115 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4577788888877777777766666666666666666665555555444444444444556666666643
No 170
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.64 E-value=4.1e+02 Score=26.77 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 002622 641 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE 688 (899)
Q Consensus 641 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q 688 (899)
|+....|-..+...-|+-+.+|++=|..+-.-.++|.++|+.......
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~ 91 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSE 91 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555666666666666666777777777766554433
No 171
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=39.58 E-value=1.4e+02 Score=29.50 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCcccccccchhhh
Q 002622 705 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 784 (899)
Q Consensus 705 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~~~~~~w~ 784 (899)
..-..++-.-+.++.++...+..|..+ ++.|.+.+++.-+.+-+.|+..-..|-.....--..+-.-+-...-+.|+
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~---i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~~k~Ks~~l~~G~v~~R 82 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIAR---IKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDELTKKKSLKLPFGTVGFR 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-----EE-SS-EE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhcccceEEEcCCeeEEEE
Confidence 334445555556666666666666554 46899999999999999999999999865432211333344456778888
Q ss_pred hcccccchHHHHHhHHHHHHHHHHh
Q 002622 785 NAGKQFSVDQTVSRAQSLVDKLKAM 809 (899)
Q Consensus 785 ~~~~~~~~~~~~~ra~~l~~klk~m 809 (899)
.......+. --+.|++.||.+
T Consensus 83 ~~~~~~~~~----~~~~vl~~Lk~~ 103 (149)
T PF07352_consen 83 KSTPKVKVR----DEEKVLEWLKEN 103 (149)
T ss_dssp --------T-----HHHHHHHHHHC
T ss_pred ecCCcccCC----CHHHHHHHHHHc
Confidence 777666541 456788888776
No 172
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.27 E-value=5e+02 Score=27.63 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhHHHHHHHH
Q 002622 599 SAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA---EREVDKIALMKERAAIESEMEI 675 (899)
Q Consensus 599 ~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~---ere~e~~~llKerAa~e~e~q~ 675 (899)
..+.+......+.-.+.++.|+ -|.++...=..++..+++-.+......+++.. .++++++.|=+....++.-++.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id-~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRID-QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhH--HHHHHHHHHHHHH
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYE--KERINMLRKEAEN 713 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~E--k~~l~kL~~~~e~ 713 (899)
|.-+=..+-+.|+.+...-+=+..+ ..||++|...+..
T Consensus 103 l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~ 142 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDD 142 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhc
No 173
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=39.16 E-value=5.6e+02 Score=30.66 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCCCcHHHHHHHHHcccchhhHH----------HHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002622 565 QPDKPVTNAQAAVALAIGEASDAVN----------EELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKI 634 (899)
Q Consensus 565 qPnKPVTRAEAAAaL~~G~~~e~v~----------eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~ 634 (899)
.+....+..++|.+...+++.+..+ +|-.+.-+..+..+...+..+.... +-+.+.|+.+..-.
T Consensus 103 ~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y------~~~l~~Le~~~~~~ 176 (447)
T KOG2751|consen 103 GSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTY------KACLQRLEQQNQDV 176 (447)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhcCccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 002622 635 DVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 693 (899)
Q Consensus 635 ~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~ 693 (899)
=++.+.-.+.+|..+......++..++|+++.++.+-+.+..=+.+.++....+-.+
T Consensus 177 --~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~e 233 (447)
T KOG2751|consen 177 --SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWRE 233 (447)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 174
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.72 E-value=3.6e+02 Score=30.65 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHh----hhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002622 667 AAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA 731 (899)
Q Consensus 667 Aa~e~e~q~L~~Lr~EVde~~q~L----~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkA 731 (899)
++|..|++-|+.....++-.-|+| ...-..|.+=...|....+.++.-.+++.++|++||-=..+
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666655555554444433 33445555556666677777777777777777777744333
No 175
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.69 E-value=1.7e+02 Score=31.03 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 002622 642 EEARQELERLRAE 654 (899)
Q Consensus 642 eea~~eLe~~r~e 654 (899)
.++..||++++++
T Consensus 96 p~le~el~~l~~~ 108 (206)
T PRK10884 96 PDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666666543
No 176
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.66 E-value=1.1e+03 Score=31.17 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=61.2
Q ss_pred HHHHHHHHhhHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002622 593 QRIEAESAAENAVSEHSALVAEV---EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 669 (899)
Q Consensus 593 ~RlEAE~~a~~av~~~~~l~~~~---~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~ 669 (899)
.|||+-.--..+...+.+|.+.+ |.+|+ .++.++..=+.....+|........+.+.++.+-..-+.....=.-++
T Consensus 665 srLe~~k~~~~~~~~~~~l~~~L~~~r~~i~-~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 665 SRLELLKNVNESRSELKELQESLDEVRNEIE-DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 45665555555555555554443 55553 344444433444444444444445555555444333333332223333
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceeh---h------hHHHHHHHHHHHHHHHHHHHHHh
Q 002622 670 ESEMEILSKLRREVEEQLESLMSNKVEI---S------YEKERINMLRKEAENENQEIARL 721 (899)
Q Consensus 670 e~e~q~L~~Lr~EVde~~q~L~s~kvei---~------~Ek~~l~kL~~~~e~~~q~i~~~ 721 (899)
+.-...|..++-..+.+.+..-+.+.++ + .|++++.+|..++..=++.+-.+
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~ 804 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRAL 804 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333444444444433333333322222 2 46788888888777666554433
No 177
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.20 E-value=3e+02 Score=24.52 Aligned_cols=56 Identities=34% Similarity=0.485 Sum_probs=36.6
Q ss_pred HHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002622 594 RIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 653 (899)
Q Consensus 594 RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ 653 (899)
-|+||-.|.+++..+ |- ++ +.-|..|+.+|..-..+..+++.-....+.+++++|.
T Consensus 5 aL~~EirakQ~~~eE--L~-kv-k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEE--LT-KV-KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHH--HH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHH--HH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366777777766655 32 33 3445678888887777777777777777777776664
No 178
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.00 E-value=1.1e+03 Score=31.09 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=15.7
Q ss_pred CccCCCCcCcHHHHHHHH
Q 002622 489 IFFLPESPLSRQDLVSWK 506 (899)
Q Consensus 489 ~tF~PD~PITRQELAvwk 506 (899)
.+|--++-+||.|++.++
T Consensus 108 eY~lD~k~Vtk~evvnLL 125 (1200)
T KOG0964|consen 108 EYFLDNKMVTKGEVVNLL 125 (1200)
T ss_pred hhhcccccccHHHHHHHH
Confidence 389999999999999863
No 179
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.89 E-value=4.8e+02 Score=32.43 Aligned_cols=62 Identities=19% Similarity=0.405 Sum_probs=38.0
Q ss_pred CcCCCCCccHHHHHHHHHHHcccccccccccccccccccCCCCCCccCCCCCCCChHHHHHHHHcCCcccCcccccCCCC
Q 002622 405 DVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNE 484 (899)
Q Consensus 405 ~F~Pn~pITRAEFARwLVRAsn~L~Rn~~skI~Pa~~i~~stepAF~DVppsDPyf~yIQAAAEAGIIsGkLSG~~~~s~ 484 (899)
+....+-+.|+|.++|+... + .|. -.=+||+| -|. .+..++.. .
T Consensus 268 ~~~S~r~~~~~eVve~I~~l-G----------~Pv--------vVAtDVtp-~P~--~V~KiAas-----f--------- 311 (652)
T COG2433 268 DLESRRGIDRSEVVEFISEL-G----------KPV--------VVATDVTP-APE--TVKKIAAS-----F--------- 311 (652)
T ss_pred eeeccccCCHHHHHHHHHHc-C----------Cce--------EEEccCCC-ChH--HHHHHHHH-----c---------
Confidence 35567778899999998663 2 142 23458854 343 34443321 1
Q ss_pred CCCCCccCCCCcCcHHHHHH
Q 002622 485 EPGPIFFLPESPLSRQDLVS 504 (899)
Q Consensus 485 ddG~~tF~PD~PITRQELAv 504 (899)
|...|-|++-||=+|=..
T Consensus 312 --~A~ly~P~~dLsveEK~~ 329 (652)
T COG2433 312 --NAVLYTPDRDLSVEEKQE 329 (652)
T ss_pred --CCcccCCcccCCHHHHHH
Confidence 344799999999888554
No 180
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.82 E-value=1.1e+02 Score=35.18 Aligned_cols=39 Identities=31% Similarity=0.255 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHH
Q 002622 664 KERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 702 (899)
Q Consensus 664 KerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~ 702 (899)
|=|.++|.|++-|..+.+++---.|.|...+-++..|++
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~e 256 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKE 256 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH
Confidence 334444555544444444444444444444333333333
No 181
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=36.24 E-value=8.2e+02 Score=30.64 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=35.9
Q ss_pred CCCcHHHH-HHHHHcccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHH
Q 002622 568 KPVTNAQA-AVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMERE-----KIDVVEKMA 641 (899)
Q Consensus 568 KPVTRAEA-AAaL~~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~-----~~~~vek~~ 641 (899)
..+...+. ..++..-.--+.++-||.+..|.---+--++ .++.|.+=.+-++.++..|++ -..+++++.
T Consensus 309 ~~L~~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~a-----iEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~ 383 (657)
T KOG1854|consen 309 ENLSEDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKRA-----IEKQRLQDSRALRAQLEYELEAHRRELQQELFKLI 383 (657)
T ss_pred hhccHhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----HHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 3333444455666666666443322222111 111222212344444443332 233466666
Q ss_pred HHHHHHHHHHHHH
Q 002622 642 EEARQELERLRAE 654 (899)
Q Consensus 642 eea~~eLe~~r~e 654 (899)
++.+..++++=..
T Consensus 384 ~~~~~~~~~el~~ 396 (657)
T KOG1854|consen 384 EEIRSSSKNELRN 396 (657)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555443
No 182
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.21 E-value=9.5e+02 Score=29.95 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhHHHHHHH---HHHhhhcceehhhHHHHHH
Q 002622 632 EKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRREVEEQ---LESLMSNKVEISYEKERIN 705 (899)
Q Consensus 632 ~~~~~vek~~eea~~eLe~~r~ere~---e~~~llKerAa~e~e~q~L~~Lr~EVde~---~q~L~s~kvei~~Ek~~l~ 705 (899)
.+|.++|.-+-..++||++.+.|+|. ....+..-.+++|.|+- +||.|+.|- =+||.++-.|.-.|-=-||
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~---rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 57888888888889999988887764 33456666788888874 566666553 4677777666655555566
Q ss_pred HHHHHHH
Q 002622 706 MLRKEAE 712 (899)
Q Consensus 706 kL~~~~e 712 (899)
|+-+-+-
T Consensus 184 KqVs~LR 190 (772)
T KOG0999|consen 184 KQVSNLR 190 (772)
T ss_pred HHHHHHh
Confidence 6655443
No 183
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.19 E-value=1.7e+02 Score=36.06 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002622 702 ERINMLRKEAENENQEIARLQYELEVE 728 (899)
Q Consensus 702 ~~l~kL~~~~e~~~q~i~~~k~~LE~E 728 (899)
.+++.|+..+.++++++++||-++|.-
T Consensus 114 ~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 114 TKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 456777778888888888887776643
No 184
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=35.88 E-value=1.1e+02 Score=29.85 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhh
Q 002622 822 NTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAG 884 (899)
Q Consensus 822 ~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~ 884 (899)
+.++..+..|++-+-+-....+.-+.+=-+...+++...+.+++.+..+-+..+..++|-.++
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~ 73 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAAD 73 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444444444444433333333333333333345666667777777777777667777666554
No 185
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=35.64 E-value=90 Score=29.94 Aligned_cols=61 Identities=36% Similarity=0.368 Sum_probs=37.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 002622 626 ELSMEREKIDVVEKMAEEARQELERLRAEREVD----KIALMKERAAIESEMEILSKLRREVEEQ 686 (899)
Q Consensus 626 el~~Er~~~~~vek~~eea~~eLe~~r~ere~e----~~~llKerAa~e~e~q~L~~Lr~EVde~ 686 (899)
+|..|+.+...+|+-...+-.|||.|-+.==.+ -+.--++|++++.....|-.--.|.+..
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~ 66 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEAL 66 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888877643222 2233456666666665544444444433
No 186
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.36 E-value=8.4e+02 Score=29.11 Aligned_cols=158 Identities=27% Similarity=0.359 Sum_probs=78.7
Q ss_pred CCcHHHHHHHHH--cccchhhHHHHHHHHHHHHHhhHH-----HHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002622 569 PVTNAQAAVALA--IGEASDAVNEELQRIEAESAAENA-----VSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 641 (899)
Q Consensus 569 PVTRAEAAAaL~--~G~~~e~v~eEL~RlEAE~~a~~a-----v~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~ 641 (899)
.+++++-|+... .+..-+.++.||.++-.+-..-.+ .-....++.+...|+ ..|..+|..=.++...+.+.+
T Consensus 156 A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~-~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 156 ALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDA-EEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345666655554 666677778888777644332211 111233333334444 367666544444444443333
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 002622 642 ----------EEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 711 (899)
Q Consensus 642 ----------eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~ 711 (899)
..+..++..|+.+-..-...-+.+ .. ..+.....+...|.+-+.+.-.=+.+|++...++
T Consensus 235 ~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~--------~~--~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~ 304 (522)
T PF05701_consen 235 EAAKDLESKLAEASAELESLQAELEAAKESKLEE--------EA--EAKEKSSELQSSLASAKKELEEAKKELEKAKEEA 304 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hH--HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222111111111111 00 2233333344445555555555666677777777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002622 712 ENENQEIARLQYELEVERKALSMARA 737 (899)
Q Consensus 712 e~~~q~i~~~k~~LE~EkkAL~m~Rs 737 (899)
..=+..+.-|+.+|+-+|.-|.-+|-
T Consensus 305 ~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 305 SSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777776664
No 187
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=35.33 E-value=8.1e+02 Score=31.65 Aligned_cols=60 Identities=25% Similarity=0.168 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhH
Q 002622 636 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYE 700 (899)
Q Consensus 636 ~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~E 700 (899)
.+.|-|++....|.--+..+.+|..-+.|-+-.+|.|+ -|.|-||+-++=.-++-..-.|
T Consensus 900 ~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER-----~rrEaeek~rre~ee~k~~k~e 959 (1259)
T KOG0163|consen 900 VAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAER-----KRREAEEKRRREEEEKKRAKAE 959 (1259)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHH
Confidence 34555555555555433344444444555444444443 3555555555444433333333
No 188
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.14 E-value=5.1e+02 Score=30.65 Aligned_cols=67 Identities=28% Similarity=0.432 Sum_probs=46.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002622 663 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 733 (899)
Q Consensus 663 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 733 (899)
.|||+.-|.|-..- +|+-|-.-|-|...-+|+-.-.|++.|. +++|.+..++.+++-.+.+--.||.
T Consensus 321 akek~~KEAqarea-klqaec~rQ~qlaLEEKaaLrkerd~L~---keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 321 AKEKAGKEAQAREA-KLQAECARQTQLALEEKAALRKERDSLA---KELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45555555544332 7788888888888888877777776654 4667777777777777777777764
No 189
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.77 E-value=1.2e+03 Score=30.82 Aligned_cols=180 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002622 583 EASDAVNEELQRIEAESAAENAVSEHSALVAEV-----EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV 657 (899)
Q Consensus 583 ~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~-----~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~ 657 (899)
+..+.+.+=|..|.++-.=-....-+.+|.++- -++-.....++++.+..++.++..-+-+....+.+++.+-+.
T Consensus 255 ~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~ 334 (1074)
T KOG0250|consen 255 EQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA 334 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHH
Q 002622 658 DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA----ENENQEIARLQYELEVERKALS 733 (899)
Q Consensus 658 e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~----e~~~q~i~~~k~~LE~EkkAL~ 733 (899)
-..++.--|+.++.-+-....++++.-+.....--.|..|.+=+..|.++.++. ..+..++.+.-..|+.|.+.|.
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 002622 734 MARAWAEDEAKRAREQAKALEGARDRWER 762 (899)
Q Consensus 734 m~RsWaEdEA~r~~e~A~vLEea~~rW~~ 762 (899)
-...=+.+|-...++-++.-++....=++
T Consensus 415 ~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 415 EQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 190
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.35 E-value=6.2e+02 Score=27.26 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=21.6
Q ss_pred HHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002622 593 QRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKI 634 (899)
Q Consensus 593 ~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~ 634 (899)
-+.|+|++|..=..--..|...+++.|+ -|-++...++..+
T Consensus 65 ~~~e~E~~a~~H~~la~~L~~ev~~~l~-~f~~~~~k~~k~~ 105 (233)
T cd07649 65 VKKSLADEAEVHLKFSSKLQSEVEKPLL-NFRENFKKDMKKL 105 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3456777765533333334444455564 6666655554443
No 191
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.28 E-value=2.7e+02 Score=28.70 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=7.8
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 002622 731 ALSMARAWAEDEAKRARE 748 (899)
Q Consensus 731 AL~m~RsWaEdEA~r~~e 748 (899)
||.|--.=+|+..++.++
T Consensus 155 ~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 192
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=34.15 E-value=2.7e+02 Score=31.07 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002622 670 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYE 724 (899)
Q Consensus 670 e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~ 724 (899)
..++..|..-+.|++++++.+..++-++..++...++....++.++.++...+-+
T Consensus 25 ~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~ 79 (344)
T PF12777_consen 25 EEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEE 79 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555554444444344444444444444444444444433
No 193
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=33.97 E-value=1.2e+03 Score=30.68 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 002622 816 KSKEIINTIIHKILLFISNLKKWA 839 (899)
Q Consensus 816 ~~~~~~~~~~~~i~~~i~~l~~~~ 839 (899)
+.+++++.+|+-.+.++..|+.-+
T Consensus 625 ~~r~~~~~~~e~~q~~~~~~k~~~ 648 (1041)
T KOG0243|consen 625 KDRDILSEVLESLQQLQEVLKKDS 648 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhH
Confidence 567788888888888777776543
No 194
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=33.18 E-value=1.5e+02 Score=28.49 Aligned_cols=82 Identities=29% Similarity=0.392 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHH
Q 002622 632 EKIDVVEKMAEEARQELERLRAEREV-------DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 704 (899)
Q Consensus 632 ~~~~~vek~~eea~~eLe~~r~ere~-------e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l 704 (899)
+....=.+.+..+..|||++|.--.- =..-|=+|||+++-| --|++|++-+|.. |+.+-|
T Consensus 6 ~~v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mE-----------A~Qy~Rm~EEk~~--yD~e~i 72 (94)
T PF04576_consen 6 RAVEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEME-----------ARQYQRMAEEKAE--YDQEAI 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHh--hHHHHH
Confidence 33444455566666777776642211 111233455554322 1478888888865 566778
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 002622 705 NMLRKEAENENQEIARLQYELE 726 (899)
Q Consensus 705 ~kL~~~~e~~~q~i~~~k~~LE 726 (899)
+.|..-+-.+..++..|..+||
T Consensus 73 e~L~~~l~~rE~e~~~Le~ele 94 (94)
T PF04576_consen 73 ESLKDILYKREKEIQSLEAELE 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 8888777777777777666653
No 195
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=33.03 E-value=2.3e+02 Score=33.13 Aligned_cols=50 Identities=38% Similarity=0.378 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 002622 609 SALVAEVEKEIN--ESFEKELSMEREKIDV----VEKMAEEARQELERLRAEREVD 658 (899)
Q Consensus 609 ~~l~~~~~~di~--~~f~~el~~Er~~~~~----vek~~eea~~eLe~~r~ere~e 658 (899)
.+|+-++++|-- .--++++..||+|+.. |||+++|..-|.+.||++++.+
T Consensus 209 ~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~re 264 (561)
T KOG1103|consen 209 EEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELERE 264 (561)
T ss_pred HHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677752 2457788899998764 8889988888888888866543
No 196
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=32.74 E-value=41 Score=30.57 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCcEE-----------------EEcCCcccccccchhhhhcccccc
Q 002622 739 AEDEAKRAREQAKALEGARDRWERQGIKV-----------------VVDKDLREESDAAVMWVNAGKQFS 791 (899)
Q Consensus 739 aEdEA~r~~e~A~vLEea~~rW~~~gikv-----------------~vd~~~~~~~~~~~~w~~~~~~~~ 791 (899)
.+-+.++.+++..+|.+++..=..+||.+ .|---++...++|-||.--|+.-.
T Consensus 12 ~~~~~~~~~e~~~~~~~i~~~~~~~Gis~~el~~~~~~~~~~~~~~~~~~KYr~p~~~g~tWsGrGr~P~ 81 (93)
T PF00816_consen 12 KEIEERRKQEREEAIAEIRELMAEYGISPEELAFGSAKKKKKRKRAKVPPKYRNPENPGETWSGRGRRPK 81 (93)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHTT--HHHCHHCCS-----EEEECSSESEEECSSSSEEECSSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHhhhhhhccccccccCCCCCeEeecCCCCCEeeccCCCCH
Confidence 45566777888889999999888999764 111223444456789987776643
No 197
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.39 E-value=1.1e+03 Score=29.70 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002622 675 ILSKLRREVEEQLESLMSNKVEISYEKERINM 706 (899)
Q Consensus 675 ~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 706 (899)
.+..+-.++....++|....-++..++..++.
T Consensus 278 ~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~ 309 (908)
T COG0419 278 ELERLLEELEEKIERLEELEREIEELEEELEG 309 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433333
No 198
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=32.11 E-value=1.4e+03 Score=30.79 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=39.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhh
Q 002622 635 DVVEKMAEEAR---QELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM 691 (899)
Q Consensus 635 ~~vek~~eea~---~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~ 691 (899)
.+++..+.+.. ..|+++-.+-++++..+.+..+.+--.++-+..||.+++++.+.+-
T Consensus 497 ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~ 556 (1317)
T KOG0612|consen 497 KEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMR 556 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence 34443433333 3444444456667777788888888888899999999998887665
No 199
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.07 E-value=7.2e+02 Score=27.29 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 002622 588 VNEELQRIEAE 598 (899)
Q Consensus 588 v~eEL~RlEAE 598 (899)
+..+++|++|+
T Consensus 86 l~~~~~~l~a~ 96 (423)
T TIGR01843 86 LESQVLRLEAE 96 (423)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 200
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=32.04 E-value=3.8e+02 Score=33.86 Aligned_cols=78 Identities=32% Similarity=0.374 Sum_probs=43.7
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----
Q 002622 661 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR---- 736 (899)
Q Consensus 661 ~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R---- 736 (899)
.|-.|||++|.+-.-+-.=|.-||.|.+- -...-+.-..+|+...+.+-.+--+.|-|+.|--|+-
T Consensus 393 al~~era~l~a~w~rv~egrr~v~~mv~~----------grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ 462 (828)
T PF04094_consen 393 ALAAERAALDAEWARVDEGRRAVDAMVEV----------GRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLD 462 (828)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777666555555566666442 1222233345555555555555555555555544432
Q ss_pred -----------HhHHHHHHHHHH
Q 002622 737 -----------AWAEDEAKRARE 748 (899)
Q Consensus 737 -----------sWaEdEA~r~~e 748 (899)
+|+||=+||...
T Consensus 463 ea~~~irlqy~~~~~~l~k~~~~ 485 (828)
T PF04094_consen 463 EALGDIRLQYEAHAEDLAKRVDD 485 (828)
T ss_pred hhccccccccchHHHHHHHHHHh
Confidence 788888877654
No 201
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=32.01 E-value=5.6e+02 Score=26.02 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 002622 636 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 693 (899)
Q Consensus 636 ~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~ 693 (899)
+.+++.+.|..+.+..+. |..-.+.+-..+.-+..+.+++..+-.++.+.|..|..+
T Consensus 44 ~~~~i~~~a~~~ae~ek~-r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~ 100 (198)
T PRK03963 44 KAEWILRKAKTQAELEKQ-RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPED 100 (198)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555555555554443 333333444455666677888888999998888887765
No 202
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=31.91 E-value=2e+02 Score=26.50 Aligned_cols=98 Identities=9% Similarity=0.157 Sum_probs=39.5
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 002622 793 DQTVSRAQSLVDKLKAMANDVS-GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEF 871 (899)
Q Consensus 793 ~~~~~ra~~l~~klk~m~~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (899)
++.+..-.+-++-.+.++.++. ...+.++.++++.=..++..|...+.+.+-...+-+.. ...+......+
T Consensus 7 n~Ll~~~~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~--------~g~~~r~~~~i 78 (111)
T PF09537_consen 7 NDLLKGLHDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSF--------KGALHRAWMDI 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HH--------CHHHH-TTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCH--------HHHHHHHHHHH
Confidence 3444444455555666666666 66677777777777777777777777776554333221 22233344455
Q ss_pred hhhhcccchh-hhhhhhhhHhhhhhhcc
Q 002622 872 RSNLTEGAKR-VAGDCREGVEKLTQRFK 898 (899)
Q Consensus 872 ~~~~~~~~kr-~~~~c~~gv~k~~~rfk 898 (899)
.+.+..+.+. +.+.|..|=.++.+.|+
T Consensus 79 k~~~~~~d~~aiL~~~~~gE~~~~~~y~ 106 (111)
T PF09537_consen 79 KSALGGDDDEAILEECERGEDMALEAYE 106 (111)
T ss_dssp HHS-----H-------------------
T ss_pred HHHhcCCCccchhhhhhhhhhhhhhhcc
Confidence 5556666564 89999998888877775
No 203
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=31.79 E-value=5.1e+02 Score=31.19 Aligned_cols=61 Identities=25% Similarity=0.310 Sum_probs=41.7
Q ss_pred ccccchHHHHHhHHHHHHHHHHhhhhcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002622 787 GKQFSVDQTVSRAQSLVDKLKAMANDVS-------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELK 850 (899)
Q Consensus 787 ~~~~~~~~~~~ra~~l~~klk~m~~~~~-------~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~ 850 (899)
.|...-++-+.-|....+|||.--..+- |+| |+.|=+||.+.-+.|-+--..++.+.++.+
T Consensus 354 kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss---lDdVD~kIleak~al~evtt~lrErl~RWq 421 (575)
T KOG4403|consen 354 KKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS---LDDVDHKILEAKSALSEVTTLLRERLHRWQ 421 (575)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888887655543 445 777778888877777666655555555544
No 204
>PRK10404 hypothetical protein; Provisional
Probab=31.68 E-value=2.2e+02 Score=27.29 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=36.3
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002622 788 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMR 845 (899)
Q Consensus 788 ~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~ 845 (899)
+++.-+....--+.|++-++.|.......+.+-+..+-.++...+...|....++...
T Consensus 3 ~~~~~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 3 NQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3445555555556777777777666666666666666666666666666655554443
No 205
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=31.62 E-value=6.5e+02 Score=26.69 Aligned_cols=93 Identities=23% Similarity=0.343 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002622 667 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRA 746 (899)
Q Consensus 667 Aa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~ 746 (899)
|+|.-..++|..|..||-|-=.-+-.++..+..=+.+++--..-...-++.+..++.-|+.=+.-|..++.=++-=-...
T Consensus 60 AaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el 139 (188)
T PF05335_consen 60 AALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQEL 139 (188)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666555444444444444444444444444444444455555555554544444444444444444
Q ss_pred HHHHHHHHHHhHH
Q 002622 747 REQAKALEGARDR 759 (899)
Q Consensus 747 ~e~A~vLEea~~r 759 (899)
.|.-..||.|++|
T Consensus 140 ~eK~qLLeaAk~R 152 (188)
T PF05335_consen 140 AEKTQLLEAAKRR 152 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 206
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.17 E-value=1.2e+03 Score=29.56 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 002622 632 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 711 (899)
Q Consensus 632 ~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~ 711 (899)
..+-+.|. +++.-.-|=...++++..+..||.||..+-....+|..=+...+++.+.| +..+-..+.++.+|..++
T Consensus 458 t~gsA~ed-~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l---~~~~~~~~~~i~~leeq~ 533 (698)
T KOG0978|consen 458 TIGSAFED-MQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTL---KASVDKLELKIGKLEEQE 533 (698)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33444444 44555556667788999999999999888777666666666666665555 455677777777777776
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 002622 712 ENENQEIARLQYELEVERKALSMAR 736 (899)
Q Consensus 712 e~~~q~i~~~k~~LE~EkkAL~m~R 736 (899)
-.=......+.-+|....-+|.|.+
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~k 558 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLK 558 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHH
Confidence 6666666666666666666666664
No 207
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=30.77 E-value=6.5e+02 Score=26.43 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=70.7
Q ss_pred HHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002622 595 IEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 674 (899)
Q Consensus 595 lEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q 674 (899)
.|.|.+|..-..--..|..++...|. .|-.++..+|.... .+.+++...+..-...+.|-|..-+.--+
T Consensus 67 ~e~e~~a~~H~~~a~~L~~~v~~~l~-~~~~~~~~~rK~~~----------~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~ 135 (236)
T cd07651 67 LETESMAKSHLKFAKQIRQDLEEKLA-AFASSYTQKRKKIQ----------SHMEKLLKKKQDQEKYLEKAREKYEADCS 135 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444432222334444455664 46777776665542 23333333344444555555555554444
Q ss_pred HHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002622 675 ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALE 754 (899)
Q Consensus 675 ~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLE 754 (899)
.+..++.+. + .++.+ .++|+...++.-.+.+...+...+.=.++|.-.|.=-+.+-..+=.+-.-||
T Consensus 136 ~~e~~~~~~----~-~~~~k--------e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lE 202 (236)
T cd07651 136 KINSYTLQS----Q-LTWGK--------ELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLE 202 (236)
T ss_pred hHHHHHHHH----c-ccCcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444321 1 12222 3677777777777777777777766666666665323333344444444555
Q ss_pred HHhH
Q 002622 755 GARD 758 (899)
Q Consensus 755 ea~~ 758 (899)
+-|-
T Consensus 203 e~Ri 206 (236)
T cd07651 203 EERI 206 (236)
T ss_pred HHHH
Confidence 5443
No 208
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=30.73 E-value=4.8e+02 Score=33.91 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002622 625 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKER 666 (899)
Q Consensus 625 ~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKer 666 (899)
++..+||.+.+--.+..++.++|..||...+.+.-..|.|..
T Consensus 1114 dK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~ 1155 (1189)
T KOG1265|consen 1114 DKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKH 1155 (1189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777776666665555543
No 209
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=30.60 E-value=1.2e+03 Score=29.43 Aligned_cols=82 Identities=26% Similarity=0.250 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 002622 591 ELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDV--VEKMAEEARQELERLRAEREVDKI-ALMKERA 667 (899)
Q Consensus 591 EL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~--vek~~eea~~eLe~~r~ere~e~~-~llKerA 667 (899)
||.|.++|+..+..... ..|...|+.+|..+=.+... +|.+=+-+++----+..+.++++. .+|+||.
T Consensus 367 ~~~~h~~~~~~E~~~~~---------~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ern 437 (657)
T KOG1854|consen 367 ELEAHRRELQQELFKLI---------EEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERN 437 (657)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 45555555555544333 26777777777665322221 333333333322223344444443 6788887
Q ss_pred HHHHHHH-HHHHhHH
Q 002622 668 AIESEME-ILSKLRR 681 (899)
Q Consensus 668 a~e~e~q-~L~~Lr~ 681 (899)
--..|-- .|.+||-
T Consensus 438 l~~~qvg~aL~rLrg 452 (657)
T KOG1854|consen 438 LHSSQVGKALSRLRG 452 (657)
T ss_pred chHhHHHHHHHHHHh
Confidence 6666655 6666663
No 210
>PRK15396 murein lipoprotein; Provisional
Probab=30.47 E-value=1.8e+02 Score=26.95 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002622 703 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 750 (899)
Q Consensus 703 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A 750 (899)
.+++|+++++.=+..+.+ |..+..+++..--=+.+||.|+.+|=
T Consensus 26 kvd~LssqV~~L~~kvdq----l~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQ----LSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665554444444 44444555555445889999999873
No 211
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=30.19 E-value=8.8e+02 Score=28.75 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=37.8
Q ss_pred HHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002622 686 QLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR 736 (899)
Q Consensus 686 ~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R 736 (899)
|++.|..-++--.. +..++||+++++...+++.+++..|..+.+...|..
T Consensus 390 qa~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~ 439 (445)
T cd00187 390 QADAILDMRLRRLT-KLEREKLLKELKELEAEIEDLEKILASEERPKDLWK 439 (445)
T ss_pred HHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 56666555554333 567789999999999999999999988888766643
No 212
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=30.18 E-value=4.2e+02 Score=24.08 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcC-Ccccccccch
Q 002622 704 INMLRKEAENENQEIARLQYELE-VERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDK-DLREESDAAV 781 (899)
Q Consensus 704 l~kL~~~~e~~~q~i~~~k~~LE-~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~-~~~~~~~~~~ 781 (899)
|+.|..-+..+++.....++.-- +....+.=+..+.++.|...++|+.-+.+ |=...|..+.... ++.+ .+.+
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e---~i~~lgg~p~~~~~~~~~--~~~~ 75 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAE---RILMLGGKPSGSPVEIPE--IPKP 75 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTS-SSTSHHHHHH--HHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHH---HHhcCCCCCCCcHHHhhh--hhcc
Confidence 45566666666666655544322 22334444567788888888888877765 3334443222211 1111 1111
Q ss_pred hhhhcccccchHHHHHhH----HHHHHHHHHhhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002622 782 MWVNAGKQFSVDQTVSRA----QSLVDKLKAMANDVS----GKSKEIINTIIHKILLFISNLKKWASKAS 843 (899)
Q Consensus 782 ~w~~~~~~~~~~~~~~ra----~~l~~klk~m~~~~~----~~~~~~~~~~~~~i~~~i~~l~~~~~~~~ 843 (899)
.+ -.++.+.+..+ +.+++.++.+..... -...+.+..++.....-+..|+.+..++.
T Consensus 76 ~~-----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l~ 140 (142)
T PF00210_consen 76 PE-----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNLK 140 (142)
T ss_dssp SS-----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 13555555544 555565655555443 35666777777777777777777766554
No 213
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.00 E-value=6.3e+02 Score=29.99 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 002622 636 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKL 679 (899)
Q Consensus 636 ~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~L 679 (899)
+-||.-.||.....+++++....-.-.|.|+||+..|++.|.+-
T Consensus 321 akek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 321 AKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKE 364 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666888888777777888888888888877653
No 214
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.76 E-value=4.5e+02 Score=32.28 Aligned_cols=60 Identities=25% Similarity=0.161 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHhHHHHHHHHHHhh
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESE-MEILSKLRREVEEQLESLM 691 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e-~q~L~~Lr~EVde~~q~L~ 691 (899)
-.|+...|.-.++.+|++-. +..+++|+.|+++++--. ..+ ..+|.++..||++|-+.|-
T Consensus 439 i~~~~~~~~sd~~~~rer~l---------~a~t~kL~~E~e~~q~~~-------~~~l~~~~~~~~~em~~~r~tlE 499 (588)
T KOG3612|consen 439 IIDLQESTLSDYSGSRERSL---------VAATEKLRQEFEELQQTS-------RRELPVPLRNFELEMAEMRKTLE 499 (588)
T ss_pred HHHHHHHHHHHhhcCCccch---------HHHHHHHHHHHHHHHHHH-------hhhhhhhhhcchHHHHHHHHHHH
Confidence 47888999999988887643 223344444443332211 111 2337778888888876653
No 215
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=29.59 E-value=8.4e+02 Score=27.31 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHH------HH-
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ------LE- 688 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~------~q- 688 (899)
-.||+.||.+.=..|++=...++||+..-..--..-+..+.-....+ +++.+-|=.++|...+.+-.+- |.
T Consensus 21 LqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~--~~S~~~~W~~lL~qT~~~sk~h~~LSd~y~~ 98 (253)
T cd07683 21 LQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQN--LLSPVNCWYLLLNQVRRESKDHATLSDIYLN 98 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999998888888888888888665542210000000111122 5778888888888877765441 11
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHH
Q 002622 689 SLMSNKVEISYEKERINMLRKEAENE-NQEIARLQYELEVERKALSMAR 736 (899)
Q Consensus 689 ~L~s~kvei~~Ek~~l~kL~~~~e~~-~q~i~~~k~~LE~EkkAL~m~R 736 (899)
.|+..=..+..+-.||.|-.+|+..+ |+++.++..||.-=.|--.|-.
T Consensus 99 ~~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t~mKtY~~y~ 147 (253)
T cd07683 99 NVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYH 147 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223777889999999998775 6789999999987555544444
No 216
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.34 E-value=2.5e+02 Score=24.92 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002622 703 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 750 (899)
Q Consensus 703 ~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A 750 (899)
+|.+|.++++.=+..|.+|..+. .+|+-.-.=+.+||.|+.+|-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv----~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV----NALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 56677776666555555555444 444444445778999998874
No 217
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=29.31 E-value=5.9e+02 Score=31.70 Aligned_cols=28 Identities=25% Similarity=0.156 Sum_probs=15.1
Q ss_pred cHHHHHHHHHcccchhhHHHHHHHHHHH
Q 002622 571 TNAQAAVALAIGEASDAVNEELQRIEAE 598 (899)
Q Consensus 571 TRAEAAAaL~~G~~~e~v~eEL~RlEAE 598 (899)
-|.++.---.+-+..|.+-||-.|-|||
T Consensus 597 dRks~srekr~~~sfdk~kE~Rr~Re~e 624 (940)
T KOG4661|consen 597 DRKSRSREKRRERSFDKRKEERRRREAE 624 (940)
T ss_pred hhHHHHHHhhhhhhHHhhhhHHHhHHHH
Confidence 4444444444455566666666555555
No 218
>PF13945 NST1: Salt tolerance down-regulator
Probab=29.16 E-value=1.9e+02 Score=30.73 Aligned_cols=69 Identities=26% Similarity=0.272 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 002622 617 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE-VD-KIALMKERAAIESEMEILSKLRREVEEQLESL 690 (899)
Q Consensus 617 ~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere-~e-~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 690 (899)
.-|+.||+.==..||..++-|||-.. |..+|..+. -+ -.+-=+-|.|||.|++.|.....|--+++...
T Consensus 105 e~LkeFW~SL~eeERr~LVkIEKe~V-----LkkmKeqq~h~C~C~vCgr~~~~ie~ele~ly~~~y~~l~~~~~~ 175 (190)
T PF13945_consen 105 EKLKEFWESLSEEERRSLVKIEKEAV-----LKKMKEQQKHSCSCSVCGRKRTAIEEELERLYDAYYEELEQYANH 175 (190)
T ss_pred HHHHHHHHccCHHHHHHHHHhhHHHH-----HHHHHHHhccCcccHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888888766677999999998542 333433210 01 12444567899999999998887776766543
No 219
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=29.04 E-value=5.4e+02 Score=25.56 Aligned_cols=51 Identities=31% Similarity=0.442 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 002622 641 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 693 (899)
Q Consensus 641 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~ 693 (899)
=+||..|.+.-|..||+|.- .|+.+++=++-.+-.++..+++..++.|-+.
T Consensus 37 KeEA~~Eie~yr~qrE~efk--~ke~~~~G~~~~~~~~~e~~t~~ki~~lk~~ 87 (108)
T KOG1772|consen 37 KEEAEKEIEEYRSQREKEFK--EKESAASGSQGALEKRLEQETDDKIAGLKTS 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 46788889999999998875 4678888889999999999999988877554
No 220
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=29.01 E-value=1.6e+03 Score=30.24 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=10.6
Q ss_pred CCCcCcHHHHHHH
Q 002622 493 PESPLSRQDLVSW 505 (899)
Q Consensus 493 PD~PITRQELAvw 505 (899)
...|+||.++...
T Consensus 139 ~~~plt~~~l~~~ 151 (1353)
T TIGR02680 139 AGIPLTRDRLKEA 151 (1353)
T ss_pred CCccCCHHHHHHH
Confidence 5789999998864
No 221
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=28.92 E-value=3.7e+02 Score=33.55 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=65.4
Q ss_pred Ccccccccchhhhhcc-----cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 002622 772 DLREESDAAVMWVNAG-----KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIH---KILLFISNLKKWASKAS 843 (899)
Q Consensus 772 ~~~~~~~~~~~w~~~~-----~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~---~i~~~i~~l~~~~~~~~ 843 (899)
.|-+++-....|.|+. +.-+.+++=.++-+|+-||+....+++.-.-+.+..+++ ++..=|..||.-+..+.
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3555565667788863 222334444578999999999999999766666666555 33334555666666666
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHh
Q 002622 844 MRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVE 891 (899)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~c~~gv~ 891 (899)
.+...++... .++..... .++. .-.-.+..|+=++.|++.+.
T Consensus 84 ~~~~~v~~~~-~~~e~~t~---~s~~--~L~~ld~vK~rm~~a~~~L~ 125 (766)
T PF10191_consen 84 EQMASVQEEI-KAVEQDTA---QSMA--QLAELDSVKSRMEAARETLQ 125 (766)
T ss_pred HHHHHHHHHH-hhhhccHH---HHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 6665555542 22222111 1111 11224556666677776654
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.70 E-value=9.4e+02 Score=27.63 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002622 699 YEKERINMLRKEAENENQEIARLQYELEVERKALSMA 735 (899)
Q Consensus 699 ~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 735 (899)
.|..|-+|-...+..+.|.|.+|+-..--|-.||.+|
T Consensus 390 reerrkqkeeeklk~e~qkikeleek~~eeedal~~a 426 (445)
T KOG2891|consen 390 REERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLA 426 (445)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666777777788888877776666677665
No 223
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=28.64 E-value=7.5e+02 Score=29.91 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHH
Q 002622 642 EEARQELERLRAEREVDKIALMKERAAIESEM----EILSKLRREVEEQLESLMSNKVEISYEKERINMLR 708 (899)
Q Consensus 642 eea~~eLe~~r~ere~e~~~llKerAa~e~e~----q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~ 708 (899)
.....||+.-|.++-.--.+|-.|+++-.|-- ..|.+|..++-++-+.+.--|-.|..-..||+||-
T Consensus 510 daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~IL~Ne~rIqk~i 580 (583)
T KOG3809|consen 510 DAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGRILNNEKRIQKFI 580 (583)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34456888888877777778888888766654 34555666666666666666666666666666654
No 224
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=28.53 E-value=5.5e+02 Score=31.27 Aligned_cols=112 Identities=30% Similarity=0.403 Sum_probs=62.8
Q ss_pred HHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHH
Q 002622 596 EAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM--KERAAIESEM 673 (899)
Q Consensus 596 EAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~ll--KerAa~e~e~ 673 (899)
+||++|.+--+...+|.+..|+=+ .+-++|-+.||.++.++- +....++| |.|+|+|-=.
T Consensus 275 ~ae~qaKnPKAekqalnqhFQ~~v-~sLEee~a~erqqlvetH-----------------~~RV~AmlNdrrR~Ale~yl 336 (615)
T KOG3540|consen 275 EAETQAKNPKAEKQALNQHFQKTV-SSLEEEAARERQQLVETH-----------------EARVEAMLNDRRRDALENYL 336 (615)
T ss_pred HHHhcccCchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHhhHHHHHHHHHH
Confidence 466777775545566666655544 466667677766655421 11112222 2233333332
Q ss_pred -----------HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHH
Q 002622 674 -----------EILSKLRREVEEQLESLMSNKVEISYEKERINMLR-----------KEAENENQEIARLQYELEVERKA 731 (899)
Q Consensus 674 -----------q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~-----------~~~e~~~q~i~~~k~~LE~EkkA 731 (899)
-+|..||.=| -..+|+|+.-|+ +-.+-+-|-+..|+++-|.=-..
T Consensus 337 aALqa~pprp~~Vl~aLkrYv-------------RAEqKdr~HTlrhyqHv~~vDpkkAaqmk~qV~thLrvIeeR~Nqs 403 (615)
T KOG3540|consen 337 AALQADPPRPHRVLQALKRYV-------------RAEQKDRMHTLRHYQHVLAVDPKKAAQMKSQVMTHLRVIEERINQS 403 (615)
T ss_pred HHHhcCCCChHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcch
Confidence 2334444322 123455555443 34566778899999998888889
Q ss_pred HHHHHHh
Q 002622 732 LSMARAW 738 (899)
Q Consensus 732 L~m~RsW 738 (899)
|+||+.-
T Consensus 404 LslL~~~ 410 (615)
T KOG3540|consen 404 LSLLYDV 410 (615)
T ss_pred hHHHhcC
Confidence 9999843
No 225
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=28.33 E-value=2.2e+02 Score=30.16 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.0
Q ss_pred CccCCCCCCcHHHHHHHH--HcccchhhHHHHHHHHHHHHHhhH
Q 002622 562 RLFQPDKPVTNAQAAVAL--AIGEASDAVNEELQRIEAESAAEN 603 (899)
Q Consensus 562 g~FqPnKPVTRAEAAAaL--~~G~~~e~v~eEL~RlEAE~~a~~ 603 (899)
-.|--.+|+|--|.+-+| ++++|+-++. .|+..+++++
T Consensus 34 ilyls~~Pmtl~Ei~E~lg~Sks~vS~~lk----kL~~~~lV~~ 73 (177)
T COG1510 34 ILYLSRKPLTLDEIAEALGMSKSNVSMGLK----KLQDWNLVKK 73 (177)
T ss_pred hheecCCCccHHHHHHHHCCCcchHHHHHH----HHHhcchHHh
Confidence 467788999999999887 4788877765 4777775554
No 226
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=27.70 E-value=1.5e+03 Score=29.54 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=9.3
Q ss_pred CCccCCCCCCcHHHHH
Q 002622 561 TRLFQPDKPVTNAQAA 576 (899)
Q Consensus 561 tg~FqPnKPVTRAEAA 576 (899)
..+|+|.=..-|-=.|
T Consensus 829 rkr~~~ri~~~~K~~~ 844 (1259)
T KOG0163|consen 829 RKRHRPRIAGIRKINA 844 (1259)
T ss_pred HhhhchHHHHHHHHHH
Confidence 4578887655554333
No 227
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=27.51 E-value=1.2e+03 Score=28.60 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=4.6
Q ss_pred CCccCCCCcC
Q 002622 488 PIFFLPESPL 497 (899)
Q Consensus 488 ~~tF~PD~PI 497 (899)
++.|+|.+|+
T Consensus 107 pFqf~~~~p~ 116 (546)
T PF07888_consen 107 PFQFRAPKPL 116 (546)
T ss_pred CcccCCCCcc
Confidence 3445544443
No 228
>PTZ00491 major vault protein; Provisional
Probab=27.17 E-value=5.9e+02 Score=32.71 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002622 638 EKMAEEARQELERLRAEREVDKIALMKERAAIESEM 673 (899)
Q Consensus 638 ek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~ 673 (899)
+.+-.++-.||++++..|+.|+ .+.|+++.||-++
T Consensus 744 ~a~~i~~~ael~~~~~~~~~e~-~~~~~~~~le~~k 778 (850)
T PTZ00491 744 KALRIEAEAELEKLRKRQELEL-EYEQAQNELEIAK 778 (850)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-HHHHHHhHHHHHH
Confidence 3444455566666666666653 4556666555444
No 229
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.12 E-value=1.3e+03 Score=28.65 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=5.6
Q ss_pred HHHHHHHHH
Q 002622 725 LEVERKALS 733 (899)
Q Consensus 725 LE~EkkAL~ 733 (899)
|-.|+++|.
T Consensus 249 l~~e~e~L~ 257 (617)
T PF15070_consen 249 LASEKEELH 257 (617)
T ss_pred HHHHHHHHH
Confidence 456666665
No 230
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=27.10 E-value=5.2e+02 Score=27.49 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=34.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002622 625 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 669 (899)
Q Consensus 625 ~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~ 669 (899)
++...||.+.+---++.++++++.-+|...+++.-..|++..+++
T Consensus 91 dK~e~er~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~ 135 (185)
T PF08703_consen 91 DKDEQERLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEV 135 (185)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888899999999999888888777777655443
No 231
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.98 E-value=6.3e+02 Score=25.04 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 002622 656 EVDKIALMKERAAIESEMEILSKLRREVEEQLESL 690 (899)
Q Consensus 656 e~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 690 (899)
..|+..|+++-..+......+..|+.++++.-++.
T Consensus 50 ~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 50 REEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666677777777777664443
No 232
>PLN02372 violaxanthin de-epoxidase
Probab=26.91 E-value=6.6e+02 Score=30.08 Aligned_cols=77 Identities=27% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHH--HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhh
Q 002622 592 LQRIE--AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEE--ARQELERLRAEREVDKIALMKERA 667 (899)
Q Consensus 592 L~RlE--AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~ee--a~~eLe~~r~ere~e~~~llKerA 667 (899)
|.||| +|. ....+-+|+.+.+++=-+.-++-+.+.+.++.. ...-|.+++.+-+.-.-+|.||
T Consensus 363 ~~~l~~~~e~-----------~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lske-- 429 (455)
T PLN02372 363 LERLEKDVEE-----------GEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKE-- 429 (455)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 002622 668 AIESEMEILSKLRREVEE 685 (899)
Q Consensus 668 a~e~e~q~L~~Lr~EVde 685 (899)
||++|..|+.|+.|
T Consensus 430 ----e~~~l~~~~~~~~~ 443 (455)
T PLN02372 430 ----EKELLEKLKMEASE 443 (455)
T ss_pred ----HHHHHHHHHHHHHH
No 233
>PRK10869 recombination and repair protein; Provisional
Probab=26.86 E-value=1.2e+03 Score=28.14 Aligned_cols=85 Identities=12% Similarity=0.200 Sum_probs=45.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhH----HHHHHHHHHHhHHHHHHHHHHhhh
Q 002622 624 EKELSMEREKIDVVEKMAEEARQELERLRAER-------EVDKIALMKERAA----IESEMEILSKLRREVEEQLESLMS 692 (899)
Q Consensus 624 ~~el~~Er~~~~~vek~~eea~~eLe~~r~er-------e~e~~~llKerAa----~e~e~q~L~~Lr~EVde~~q~L~s 692 (899)
+++|..|+.+..-.||+++.+..=++.+..+. -......|..-+. ++.-.+.|..+..++++....|-.
T Consensus 207 ~eeL~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~ 286 (553)
T PRK10869 207 FEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRH 286 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888877766666663211 0011111211122 222334455566666666666655
Q ss_pred cceehhhHHHHHHHHH
Q 002622 693 NKVEISYEKERINMLR 708 (899)
Q Consensus 693 ~kvei~~Ek~~l~kL~ 708 (899)
-.-.+.++.++|+.+.
T Consensus 287 ~~~~~~~dp~~l~~ie 302 (553)
T PRK10869 287 YLDRLDLDPNRLAELE 302 (553)
T ss_pred HHhhcCCCHHHHHHHH
Confidence 4444455555555444
No 234
>PRK11519 tyrosine kinase; Provisional
Probab=26.50 E-value=1.3e+03 Score=28.50 Aligned_cols=17 Identities=0% Similarity=-0.001 Sum_probs=10.3
Q ss_pred ccCCCCCCcHHHHHHHH
Q 002622 563 LFQPDKPVTNAQAAVAL 579 (899)
Q Consensus 563 ~FqPnKPVTRAEAAAaL 579 (899)
.|+..+|..=+..|-.|
T Consensus 233 s~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 233 TYTGEDREQIRDILNSI 249 (719)
T ss_pred EEEcCCHHHHHHHHHHH
Confidence 57777776555554444
No 235
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=26.28 E-value=9e+02 Score=27.85 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHH------------HHHHHHhhHHHHHHHHHHHHHH
Q 002622 681 REVEEQLESLMSNKVEISYEKERINMLRKEAENE------------NQEIARLQYELEVERKALSMAR 736 (899)
Q Consensus 681 ~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~------------~q~i~~~k~~LE~EkkAL~m~R 736 (899)
+.|+.+||+ +.-++..+..+|+..+.-|..= .|++++.+..| |+||.-||
T Consensus 60 e~v~~rYqR---~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~Fl---reAL~rLr 121 (324)
T PF12126_consen 60 EAVEARYQR---DYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFL---REALERLR 121 (324)
T ss_pred HHHHHHHHH---HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHhh
Confidence 455555554 3344445555555544443322 35556666555 56776666
No 236
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=26.01 E-value=4.9e+02 Score=30.06 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 002622 654 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 690 (899)
Q Consensus 654 ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L 690 (899)
++.+....+++.+..+..+.+.|.....++.++++++
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555555555555555555666666666
No 237
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=25.63 E-value=1.8e+03 Score=29.95 Aligned_cols=124 Identities=21% Similarity=0.208 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh------
Q 002622 617 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL------ 690 (899)
Q Consensus 617 ~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L------ 690 (899)
+++.+-|++.+...+++...+|+....+..|... .-..+..++-+.--+..+...+..|+...+.+-+.+
T Consensus 303 ~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~----l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~ 378 (1294)
T KOG0962|consen 303 GELLSNFEERLEEMGEKLRELEREISDLNEERSS----LIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQL 378 (1294)
T ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777888888888888888888877655533333 334445555555566666666666666676666633
Q ss_pred -hhcceehhhHHHH-HHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHhHHHHHH
Q 002622 691 -MSNKVEISYEKER-INML----RKEAENENQEIARLQYELEVERKALSMA--RAWAEDEAK 744 (899)
Q Consensus 691 -~s~kvei~~Ek~~-l~kL----~~~~e~~~q~i~~~k~~LE~EkkAL~m~--RsWaEdEA~ 744 (899)
.-...+.|.|... +.++ ...++.+-......-++++..+..+.|. +.|++=++.
T Consensus 379 ~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~ 440 (1294)
T KOG0962|consen 379 DSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQ 440 (1294)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344445555433 2221 2223333333334445555555555555 677776654
No 238
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=25.53 E-value=1e+03 Score=27.09 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=60.2
Q ss_pred cccchhhHHHHHHHHH-HHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002622 581 IGEASDAVNEELQRIE-AESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK 659 (899)
Q Consensus 581 ~G~~~e~v~eEL~RlE-AE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~ 659 (899)
.|+.-+.+..|+.||| ......+.-..+.+++.+. .+|. ++..-+++..+.-.-+.+.+.|...++.....-.
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I-~~L~-----k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~ 178 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKI-KELR-----KELEDAKKALEENEKLKELKAEIDELKKKAREIH 178 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888 4444445445566666654 2221 2222334444444444444455555554433211
Q ss_pred H--HHhhhhhHHHHHHH------HHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002622 660 I--ALMKERAAIESEME------ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 726 (899)
Q Consensus 660 ~--~llKerAa~e~e~q------~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE 726 (899)
. .-|-+.| =+|-.+ -.-.+|.+.|+|-+ .+-+++..+...|+++-.++.+|.
T Consensus 179 eki~~la~ea-qe~he~m~k~~~~~De~Rkeade~he--------------~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 179 EKIQELANEA-QEYHEEMIKLFEEADELRKEADELHE--------------EFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 1111222 111111 12234555555543 345566666666666666666543
No 239
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.44 E-value=7.4e+02 Score=25.29 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=5.2
Q ss_pred CcHHHHHHHH
Q 002622 570 VTNAQAAVAL 579 (899)
Q Consensus 570 VTRAEAAAaL 579 (899)
.|.+||=+++
T Consensus 16 ft~~QAe~i~ 25 (177)
T PF07798_consen 16 FTEEQAEAIM 25 (177)
T ss_pred CCHHHHHHHH
Confidence 4556664443
No 240
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=25.43 E-value=6.3e+02 Score=24.49 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEV 727 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~ 727 (899)
|..++.|+..+.+.|.+.+-..+.+ ..+++..+++.+.+++.+.+..+..
T Consensus 52 l~~~~~el~~~~~~l~~~~~~ls~~--~~~~~~~~l~~~~~~l~~~~~~~~~ 101 (158)
T PF03938_consen 52 LQAKQKELQKLQQKLQSQKATLSEE--ERQKRQQELQQKEQELQQFQQQAQQ 101 (158)
T ss_dssp HHHHHHHHHHHHHHHTTS----SSH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666665544433 2344455555555555555444443
No 241
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.34 E-value=1.7e+03 Score=29.49 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Q 002622 702 ERINMLRKEAENENQEIARLQYELE 726 (899)
Q Consensus 702 ~~l~kL~~~~e~~~q~i~~~k~~LE 726 (899)
+|.+-|+.++|.-.+.+..+..+||
T Consensus 325 ERaesLQ~eve~lkEr~deletdlE 349 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777776666666555544
No 242
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=25.24 E-value=5e+02 Score=30.53 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=33.4
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002622 684 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 729 (899)
Q Consensus 684 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~Ek 729 (899)
++|++.|..-++-=.. +..++||++++....+++.+++..|..+.
T Consensus 398 ~~q~~~IL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~l~~~~ 442 (445)
T smart00434 398 EEQADAILDMRLRRLT-KLEVEKLEKELKELEKEIEDLEKILASEL 442 (445)
T ss_pred HHHHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4577777666654333 66778999999999999999988887654
No 243
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.06 E-value=35 Score=35.15 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=12.5
Q ss_pred cCCCCcccccchhhHHHhhhhhh
Q 002622 91 KGGLGGIVQAGVAGVVLFAGLTF 113 (899)
Q Consensus 91 ~~~~~g~~~~gvag~~l~~gl~~ 113 (899)
+--+|-+||.|||=+|+.++|.|
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhhe
Confidence 34566667777754444444443
No 244
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.62 E-value=1.4e+03 Score=28.12 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHhhHHHHHHHH-------------------HHHHHHHHHHHHHHHhhHHHHHHH------
Q 002622 586 DAVNEELQRIEAESAAENAVSEHSALVAEVE-------------------KEINESFEKELSMEREKIDVVEKM------ 640 (899)
Q Consensus 586 e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~-------------------~di~~~f~~el~~Er~~~~~vek~------ 640 (899)
..++.+|...+++.++-++.... +..++. .-|+..=.+....+++....-.+.
T Consensus 240 ~~l~~ql~~a~~~~~~a~a~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~ 317 (754)
T TIGR01005 240 AELNTELSRARANRAAAEGTADS--VKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPR 317 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHH
Q 002622 641 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIAR 720 (899)
Q Consensus 641 ~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~ 720 (899)
...++.+++.++....++...++.. ++.+.+.+..-...++.+++.+-..-..+......+..|+.+++...+-...
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~~~---~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKITKS---LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHH
Q 002622 721 LQYELE 726 (899)
Q Consensus 721 ~k~~LE 726 (899)
+-.-+|
T Consensus 395 ll~r~~ 400 (754)
T TIGR01005 395 YLTNYR 400 (754)
T ss_pred HHHHHH
No 245
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=24.54 E-value=1.5e+03 Score=28.75 Aligned_cols=158 Identities=18% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHcccchhhHHHHHHHHHHHHHhhHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002622 575 AAVALAIGEASDAVNEELQRIEAESAAENAVS--EHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLR 652 (899)
Q Consensus 575 AAAaL~~G~~~e~v~eEL~RlEAE~~a~~av~--~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r 652 (899)
|-+...+-+..|+...||..+...-.-+..-. +|-+-++-+...++..=+.=-+.|=.+..+. .+|....
T Consensus 125 a~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~--------~~La~~q 196 (739)
T PF07111_consen 125 AGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEA--------KELAEAQ 196 (739)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH-------------HHhhhcceehhhHHHHHHHHHHHHHHHHHHHH
Q 002622 653 AEREVDKIALMKERAAIESEMEILSKLRREVEEQL-------------ESLMSNKVEISYEKERINMLRKEAENENQEIA 719 (899)
Q Consensus 653 ~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~-------------q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~ 719 (899)
.+++-=...|=|-+.+++.|.-++.+||.-|-+|. +.|.--==..--|++-|+--..-++..-+.+.
T Consensus 197 ~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt 276 (739)
T PF07111_consen 197 READLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHH----------------HHHHHHHHHhHH
Q 002622 720 RLQYELEVE----------------RKALSMARAWAE 740 (899)
Q Consensus 720 ~~k~~LE~E----------------kkAL~m~RsWaE 740 (899)
..=.--|.| +|+-.+|+.|=|
T Consensus 277 ~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WRE 313 (739)
T PF07111_consen 277 DILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWRE 313 (739)
T ss_pred HHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHH
No 246
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.38 E-value=4.3e+02 Score=27.54 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH--------------------HHHHHHHHHHH---HHHHHHHHHhhhhhHHHHH
Q 002622 616 EKEINESFEKELSMEREKIDVVEKMAE--------------------EARQELERLRA---EREVDKIALMKERAAIESE 672 (899)
Q Consensus 616 ~~di~~~f~~el~~Er~~~~~vek~~e--------------------ea~~eLe~~r~---ere~e~~~llKerAa~e~e 672 (899)
+.|| -|=+.+..-|.-+..++.+-+ +.+.-|+.-++ +|-+++...|.-+|.---=
T Consensus 40 ~~dl--~~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs 117 (175)
T PRK13182 40 EEDL--QLLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVS 117 (175)
T ss_pred HHHH--HHHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhhHHHHH
Q 002622 673 MEILSKLRREVEEQLESLMSNKVEISYEKERI 704 (899)
Q Consensus 673 ~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l 704 (899)
-|||.| |.|+|||+++|-+--.-|..+.+..
T Consensus 118 Yqll~h-r~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 118 YQLLQH-RREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhc
No 247
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=24.33 E-value=7.7e+02 Score=26.43 Aligned_cols=100 Identities=27% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCCCc----HHHHHHHHH---cccchhhHHHHHHHHHHHHHhhHHHHhh---HHHHHHHHHHHHHHHHHHHHHHH--hh
Q 002622 566 PDKPVT----NAQAAVALA---IGEASDAVNEELQRIEAESAAENAVSEH---SALVAEVEKEINESFEKELSMER--EK 633 (899)
Q Consensus 566 PnKPVT----RAEAAAaL~---~G~~~e~v~eEL~RlEAE~~a~~av~~~---~~l~~~~~~di~~~f~~el~~Er--~~ 633 (899)
|..++| +|.||-++. .|..-+-|-+||-|.|+- .|+-..++ +.|+-+. -++++.+. .-
T Consensus 38 ~~~~lTWvdSLavAAga~arekag~Ti~EIAeelG~TeqT--ir~hlkgetkAG~lv~et--------Y~~lK~G~~~~~ 107 (182)
T COG1318 38 PYERLTWVDSLAVAAGALAREKAGMTISEIAEELGRTEQT--VRNHLKGETKAGQLVRET--------YEKLKEGGLDAV 107 (182)
T ss_pred cccccchhhHHHHHHHHHHHHHccCcHHHHHHHhCCCHHH--HHHHHhcchhhhhHHHHH--------HHHHHccCcchH
Confidence 666666 588888887 466666777888887742 23322221 2222221 12222221 00
Q ss_pred HHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002622 634 IDVVEKM---A---EEARQELERLRAEREVDKIALMKERAAIESEMEI 675 (899)
Q Consensus 634 ~~~vek~---~---eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~ 675 (899)
.++.+++ . .-|..++++++.+...-+-+++++++.++-=+..
T Consensus 108 ~~~~~~~~~e~l~i~wa~~~l~ki~~~~~~~~ke~~e~k~K~~~~k~~ 155 (182)
T COG1318 108 EVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGE 155 (182)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhc
Confidence 1111111 1 1256677777777777777777777777655444
No 248
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=24.27 E-value=5.6e+02 Score=27.84 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhHHHhh
Q 002622 745 RAREQAKALEGARDRWER 762 (899)
Q Consensus 745 r~~e~A~vLEea~~rW~~ 762 (899)
..+++..-.|-+|..|++
T Consensus 81 ~~~e~~~~~e~~r~~fek 98 (228)
T PRK06800 81 HVQQQMKEIEAARQQFQK 98 (228)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566667777777775
No 249
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=24.20 E-value=4.3e+02 Score=30.29 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=24.8
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002622 689 SLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 732 (899)
Q Consensus 689 ~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL 732 (899)
.+--+|-....|+++..+-+-++|.+.|.-.+.|-.|--|-+-|
T Consensus 170 K~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeqqkliKeQKDf 213 (398)
T PF05917_consen 170 KVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQQKLIKEQKDF 213 (398)
T ss_pred HHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445666666666666666666666666655555443
No 250
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.04 E-value=1.1e+03 Score=29.64 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=43.5
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 002622 684 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 741 (899)
Q Consensus 684 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEd 741 (899)
++|.+.|..-++.-.. +..++||++|++...+++.+++..|..|.+=+.+.+.+.++
T Consensus 410 ~~q~~~il~m~l~~lt-~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ 466 (738)
T TIGR01061 410 ENQAEAIVSLRLYRLT-NTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEE 466 (738)
T ss_pred HHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666655554444 34477999999999999999999999999888887776654
No 251
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.67 E-value=77 Score=28.40 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhH
Q 002622 725 LEVERKALSMARAWAEDEAKRAREQAKAL-EGARD 758 (899)
Q Consensus 725 LE~EkkAL~m~RsWaEdEA~r~~e~A~vL-Eea~~ 758 (899)
|--|-+-+--++.|++||+|-..+|-+.| -|+.+
T Consensus 11 LRl~paiy~Aia~wA~de~RSiNaQIE~lL~E~lr 45 (63)
T COG4877 11 LRLEPAIYAAIAQWAEDEFRSINAQIEILLKEALR 45 (63)
T ss_pred eecCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344556667999999999999998865 44443
No 252
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=23.55 E-value=1.3e+03 Score=27.35 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHh-------HHHHHHHHHHhhhcceehhhHHHHHH-H--------HHHHHHHHHHHHHH
Q 002622 657 VDKIALMKERAAIESEMEILSKL-------RREVEEQLESLMSNKVEISYEKERIN-M--------LRKEAENENQEIAR 720 (899)
Q Consensus 657 ~e~~~llKerAa~e~e~q~L~~L-------r~EVde~~q~L~s~kvei~~Ek~~l~-k--------L~~~~e~~~q~i~~ 720 (899)
+++--.++..+..+|..+.+-.- -+..--|-+.+--+-.++.-|+.|++ + +...++..++++++
T Consensus 52 ~~lqk~i~~~k~~~c~r~~~r~~~~~~~~~~q~~~~q~~~~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk 131 (377)
T KOG2896|consen 52 LELQKSIRLKKDVECKRTELRVKILERLHVEQCLSAQVQSMRVEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSK 131 (377)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 002622 721 LQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 759 (899)
Q Consensus 721 ~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~r 759 (899)
.++-+|-=+..|...|.=.+-+--+-+-.-+=|.+++.+
T Consensus 132 ~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~ 170 (377)
T KOG2896|consen 132 KRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNE 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 253
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.36 E-value=2e+03 Score=29.69 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehh---hHHHHHHH
Q 002622 634 IDVVEKMAEEARQELERLRAEREV--DKI--ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS---YEKERINM 706 (899)
Q Consensus 634 ~~~vek~~eea~~eLe~~r~ere~--e~~--~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~---~Ek~~l~k 706 (899)
..++++++++++.=|.+..++-+. +.+ +|-+ .|-..-+-+.+|-.+|.|.+.+|..=-+.+. ....|.++
T Consensus 1470 ~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l---~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~ 1546 (1758)
T KOG0994|consen 1470 NRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLAL---ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAEN 1546 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHH
Confidence 345677777777666555443221 111 1111 1223334566777777777766655443332 35678899
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002622 707 LRKEAENENQEIARLQYELEVERKALSMA 735 (899)
Q Consensus 707 L~~~~e~~~q~i~~~k~~LE~EkkAL~m~ 735 (899)
|+++++.-+.....+|-..|.=++||..|
T Consensus 1547 L~s~A~~a~~~A~~v~~~ae~V~eaL~~A 1575 (1758)
T KOG0994|consen 1547 LQSEAERARSRAEDVKGQAEDVVEALEEA 1575 (1758)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888765
No 254
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=23.26 E-value=4.9e+02 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=32.7
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Q 002622 788 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILL 830 (899)
Q Consensus 788 ~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~ 830 (899)
=+..|+++.+..+.|+.|-+.++.||+||.- -|+.+..-|..
T Consensus 43 l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~-tld~vf~aV~d 84 (139)
T COG4768 43 LTSQVDGITHETEELLHKTNTLAEDVQGKVA-TLDPVFDAVKD 84 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHhHHHHHHHH
Confidence 3467899999999999999999999999974 44555544443
No 255
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=23.26 E-value=7.5e+02 Score=31.82 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHhhcCc
Q 002622 748 EQAKALEGARDRWERQGI 765 (899)
Q Consensus 748 e~A~vLEea~~rW~~~gi 765 (899)
.-..+.++.+.-|+.++-
T Consensus 202 q~~~~~d~l~~~~~~~~f 219 (835)
T COG3264 202 QLSAASDELRSLLHQQSF 219 (835)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344556666666665554
No 256
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.22 E-value=1.4e+03 Score=27.85 Aligned_cols=112 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHH
Q 002622 638 EKMAE-EARQELERLRAEREVDKIALMKERAAIESEM----------EILSKLRREVEEQLESLMSNKVEISYEKERINM 706 (899)
Q Consensus 638 ek~~e-ea~~eLe~~r~ere~e~~~llKerAa~e~e~----------q~L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~k 706 (899)
|-|+. |++.-|..--..++-..-.|=-.-..+|... |+|..+-.++.+-.+.|+-+|-.|+-||.-++|
T Consensus 311 edmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k 390 (527)
T PF15066_consen 311 EDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEK 390 (527)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHH
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002622 707 LRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQ 749 (899)
Q Consensus 707 L~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~ 749 (899)
.+..++.-...+-..=.+-..||+.|+|=--=+.-.-.+-|||
T Consensus 391 ~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 391 TLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
No 257
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.19 E-value=7.5e+02 Score=24.57 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceeh
Q 002622 670 ESEMEILSKLRREVEEQLESLMSNKVEI 697 (899)
Q Consensus 670 e~e~q~L~~Lr~EVde~~q~L~s~kvei 697 (899)
++..+-+..|+.+|+|.+..|-.+|+-.
T Consensus 54 ~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 54 ASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666777666665555443
No 258
>PF04624 Dec-1: Dec-1 repeat; InterPro: IPR006718 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This repeat is usually found in 12 copies in the central region of the protein. Its function is unknown. Length polymorphisms of Dec-1 have been observed in wild-type strains, and are caused by changes in the numbers of the first five repeats [].; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=23.18 E-value=87 Score=24.21 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHH
Q 002622 736 RAWAEDEAKRAREQ 749 (899)
Q Consensus 736 RsWaEdEA~r~~e~ 749 (899)
|-|.||.||--+++
T Consensus 9 RQwsEeqAk~qq~q 22 (27)
T PF04624_consen 9 RQWSEEQAKIQQAQ 22 (27)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999999977664
No 259
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=23.04 E-value=1.1e+03 Score=28.62 Aligned_cols=91 Identities=26% Similarity=0.363 Sum_probs=15.4
Q ss_pred cccchhhHHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHH-H-------HHHHHHHHHHHHHHHH
Q 002622 581 IGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKID-V-------VEKMAEEARQELERLR 652 (899)
Q Consensus 581 ~G~~~e~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~-~-------vek~~eea~~eLe~~r 652 (899)
+.+.-+.+.+||.||++-+.... ..++..+|.+|..+|+.=.-.+.++.. . -|.+++.--.|+++++
T Consensus 262 s~~~i~~l~~El~RL~~lK~~~l-----k~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 262 SLDTIEALEEELERLEELKKQNL-----KEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 45666779999999998775433 347777889999999876554444321 1 3556666667777777
Q ss_pred HH--HHHHHHHHhhhhhHHHHHHHHH
Q 002622 653 AE--REVDKIALMKERAAIESEMEIL 676 (899)
Q Consensus 653 ~e--re~e~~~llKerAa~e~e~q~L 676 (899)
.. .-++..+++.++-.+-.++..|
T Consensus 337 ~~~~~~k~Il~~v~k~~~l~~~~~~L 362 (619)
T PF03999_consen 337 EEYESRKPILELVEKWESLWEEMEEL 362 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 3455556676666665555544
No 260
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=22.94 E-value=32 Score=34.28 Aligned_cols=41 Identities=37% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCCchhhhhhccCCCCcccccchhhHHHhhhhhhhhhhcccc
Q 002622 80 NDGEQSIESQKKGGLGGIVQAGVAGVVLFAGLTFAALSLSKR 121 (899)
Q Consensus 80 ~~~~~~~~~~~~~~~~g~~~~gvag~~l~~gl~~aa~s~~k~ 121 (899)
+..+.+.++++...-+|...++|||+-+++|.+.. |++.|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~FL~~Va~~s~~aGF~~t-l~~aKK 55 (124)
T PF07096_consen 15 KTEEGSEKSRKFLIKGGAFLGGVAGASALAGFGTT-LALAKK 55 (124)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 45667777888888899999999999999999876 344444
No 261
>PHA02940 hypothetical protein; Provisional
Probab=22.46 E-value=4.4e+02 Score=29.76 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=70.6
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002622 676 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 755 (899)
Q Consensus 676 L~~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEe 755 (899)
|..||+.+-|-...|.--|.-|---.=....|+++++-=+++|.+.-+.--.=|+|+.+.-+-.++---.++|++++|--
T Consensus 9 lieL~eKI~eyIkDLedlk~dyd~~dfdaddLraeLeyI~kEi~~~~~~~ksVkeaielt~siL~~yy~~a~e~~k~Ls~ 88 (315)
T PHA02940 9 LIELKEKIGEYIKDLEDLKLDYDINDFDADDLRAELEYIQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKSKLLSD 88 (315)
T ss_pred hHHHHHHHHHHHHhHHHhhccCCCCcCchhhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55688888888888887777776444456788999998888988887777777888888888888888899999999987
Q ss_pred HhHHHhhcCcEE
Q 002622 756 ARDRWERQGIKV 767 (899)
Q Consensus 756 a~~rW~~~gikv 767 (899)
| +.++||+-
T Consensus 89 A---y~kN~i~s 97 (315)
T PHA02940 89 A---YNKNAIKS 97 (315)
T ss_pred H---HhhccHHH
Confidence 6 45666653
No 262
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=22.42 E-value=1.6e+03 Score=28.16 Aligned_cols=136 Identities=24% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 002622 590 EELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAE-------REVDKIAL 662 (899)
Q Consensus 590 eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~e-------re~e~~~l 662 (899)
+++.+=.||.++.+ +|-+..--+++..=..++..++...+....+|..++.. +-.+..-.
T Consensus 174 ~~~~q~~~e~e~~L-------------~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~li 240 (629)
T KOG0963|consen 174 EKLEQEWAEREAGL-------------KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLI 240 (629)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhHH
Q 002622 663 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK-ERINMLRKEAENENQEIARLQYELEVERKALSMAR-AWAE 740 (899)
Q Consensus 663 lKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek-~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~R-sWaE 740 (899)
|.+ ++.-++.+.-|..||+..-+.|++-.-.....+ +.+..+-..+.++--.|.+|-.+++..+++|+-+| .|+.
T Consensus 241 m~e---Le~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~ 317 (629)
T KOG0963|consen 241 MTE---LEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKA 317 (629)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 002622 741 D 741 (899)
Q Consensus 741 d 741 (899)
.
T Consensus 318 q 318 (629)
T KOG0963|consen 318 Q 318 (629)
T ss_pred H
No 263
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=22.26 E-value=1.2e+03 Score=26.80 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHh
Q 002622 586 DAVNEELQRIEAESAA 601 (899)
Q Consensus 586 e~v~eEL~RlEAE~~a 601 (899)
..+..+++||+||.-.
T Consensus 107 ~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 107 DNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466788888887643
No 264
>PRK10807 paraquat-inducible protein B; Provisional
Probab=22.21 E-value=6e+02 Score=30.65 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=42.2
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH-HHHHHhH
Q 002622 790 FSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSV-QELQQST 868 (899)
Q Consensus 790 ~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 868 (899)
..+++...++..+++|+..|. |+.++..+...+..+++-+.++.+.+.++...+.+.+...+ .++++..
T Consensus 413 s~l~~l~~~~~~il~kin~lp----------le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL 482 (547)
T PRK10807 413 GGLAQIQQKLMEALDKINNLP----------LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTL 482 (547)
T ss_pred CCHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Confidence 345677777788888877775 44444445555555555555555555444444333333222 4555555
Q ss_pred HHHhhhhcc
Q 002622 869 AEFRSNLTE 877 (899)
Q Consensus 869 ~~~~~~~~~ 877 (899)
.++..++.+
T Consensus 483 ~~l~~~l~~ 491 (547)
T PRK10807 483 RELNRSMQG 491 (547)
T ss_pred HHHHHHHhh
Confidence 555544443
No 265
>PTZ00421 coronin; Provisional
Probab=22.21 E-value=1.3e+02 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002622 701 KERINMLRKEAENENQEIARLQYELEVERKALSM 734 (899)
Q Consensus 701 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m 734 (899)
+.||+.|..++...|++|.+++-.|+ ||+++.|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 484 (493)
T PTZ00421 452 LGRLQALSEKLRTQHEEIKRCREALQ-KKESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35678888888888888888888876 6677665
No 266
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=22.16 E-value=7.3e+02 Score=24.07 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=45.4
Q ss_pred HHHhhhhhHHHHHHHHHHHh---HHHHHHHHHHhhhcceehhhH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002622 660 IALMKERAAIESEMEILSKL---RREVEEQLESLMSNKVEISYE---KERINMLRKEAENENQEIARLQYELEVERKALS 733 (899)
Q Consensus 660 ~~llKerAa~e~e~q~L~~L---r~EVde~~q~L~s~kvei~~E---k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~ 733 (899)
..|-+-+..++.+.+-|..| +.+....+.......+.+..= ..-|..|...+....+.|..++..++.-++.+.
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~ 102 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQ 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555 555555444444444433322 344788888888888888888888877666544
No 267
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=22.16 E-value=1.2e+03 Score=26.69 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=44.0
Q ss_pred cccccchhhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002622 775 EESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDA 852 (899)
Q Consensus 775 ~~~~~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~~~ 852 (899)
+..++-.+|... ....+.+|+..+.+-..|-..|.+-..++.+.+-......=..|++++.++..--.+|..-
T Consensus 194 ~~~~tp~~W~~~-----s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~q 266 (384)
T PF03148_consen 194 KNSSTPESWEEF-----SNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQ 266 (384)
T ss_pred ccCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677653 4778999998888877776666655555554444444444455666666655554444443
No 268
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.76 E-value=1.2e+03 Score=26.62 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=15.8
Q ss_pred cccchhhHHHHHHHHHHHHHhhH
Q 002622 581 IGEASDAVNEELQRIEAESAAEN 603 (899)
Q Consensus 581 ~G~~~e~v~eEL~RlEAE~~a~~ 603 (899)
.|--.+...+.|..+|++|.+.-
T Consensus 111 ~~~d~~~te~~l~~y~~~n~~~I 133 (309)
T TIGR00570 111 NNIDLENTKKKIETYQKENKDVI 133 (309)
T ss_pred cCCcHHHHHHHHHHHHHHhHHHH
Confidence 33344557888999999985543
No 269
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.71 E-value=5.8e+02 Score=30.75 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002622 588 VNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERA 667 (899)
Q Consensus 588 v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerA 667 (899)
++.||+.++++|-..++...+ |..+ +.+|...-...+..|| .++.+++.
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~--L~~r-~~~id~~i~~av~~~~----------------------------~~~~~~~~ 119 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENER--LQKR-EQSIDQQIQQAVQSET----------------------------QELTKEIE 119 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHh-hhhHHHHHHHHHHhhh----------------------------HHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhc
Q 002622 668 AIESEMEILSKLRREVEEQLESLMSN 693 (899)
Q Consensus 668 a~e~e~q~L~~Lr~EVde~~q~L~s~ 693 (899)
.+..|.+-|..+-..+..+|+.+...
T Consensus 120 ql~~~~~~~~~~l~~l~~~l~~~~~~ 145 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRLAGVLTG 145 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
No 270
>PRK05560 DNA gyrase subunit A; Validated
Probab=21.69 E-value=1.4e+03 Score=29.01 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=38.4
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002622 684 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARA 737 (899)
Q Consensus 684 de~~q~L~s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~Rs 737 (899)
++|.+.|..-++--.. +..++||++|++..++++.+++..|..+++=..++..
T Consensus 413 ~~qa~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~ 465 (805)
T PRK05560 413 EIQAQAILDMRLQRLT-GLERDKIEDEYKELLALIADLKDILASPERLLEIIKE 465 (805)
T ss_pred HHHHHHHHHhHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4466666655554433 3347899999999999999999999998876666543
No 271
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=21.64 E-value=31 Score=41.81 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhh
Q 002622 587 AVNEELQRIEAESAAE 602 (899)
Q Consensus 587 ~v~eEL~RlEAE~~a~ 602 (899)
.+.+.|.|||.||-.-
T Consensus 456 ~l~erl~rLe~ENk~L 471 (713)
T PF05622_consen 456 ELRERLLRLEHENKRL 471 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678899999998554
No 272
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.56 E-value=1e+03 Score=25.61 Aligned_cols=50 Identities=32% Similarity=0.424 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHH
Q 002622 678 KLRREVEEQLESLMSNKVEISYEKERINMLRKE----AENENQEIARLQYELEVERKALSM 734 (899)
Q Consensus 678 ~Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~----~e~~~q~i~~~k~~LE~EkkAL~m 734 (899)
.|+..+.++.++|.. +.+|.+.|..- ++.=+++|.++++..++|-.||+.
T Consensus 115 ~Lkk~~~ey~~~l~~-------~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa 168 (207)
T PF05010_consen 115 TLKKCIEEYEERLKK-------EEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQA 168 (207)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345666676666653 45777777654 445577888889998888888864
No 273
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.51 E-value=6.5e+02 Score=24.03 Aligned_cols=30 Identities=30% Similarity=0.600 Sum_probs=17.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHH------------HhHHHHHHH
Q 002622 716 QEIARLQYELEVERKALSMAR------------AWAEDEAKR 745 (899)
Q Consensus 716 q~i~~~k~~LE~EkkAL~m~R------------sWaEdEA~r 745 (899)
+.+..++.+|+.+|.=.++++ .|++|++=+
T Consensus 58 ~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVdWa~D~~L~ 99 (106)
T PF05837_consen 58 EKLEKLEKELKKSRQRWRVMKNVFQALIVGSGVDWAEDPKLR 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 344445555555555555554 899998754
No 274
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=21.50 E-value=9.5e+02 Score=25.15 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002622 617 KEINESFEKELSMEREKIDVVEKMAEE 643 (899)
Q Consensus 617 ~di~~~f~~el~~Er~~~~~vek~~ee 643 (899)
+||..||.+....|++-...+.|+...
T Consensus 22 ~~l~~f~keRa~iE~eYak~L~kLa~k 48 (251)
T cd07653 22 ERYGKFVKERAAIEQEYAKKLRKLVKK 48 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888777644
No 275
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=21.44 E-value=1.3e+03 Score=26.68 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=16.4
Q ss_pred ccCCCCCCcHHHHHHHHHcccchhhHHHHHHHHHHHHHh
Q 002622 563 LFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAA 601 (899)
Q Consensus 563 ~FqPnKPVTRAEAAAaL~~G~~~e~v~eEL~RlEAE~~a 601 (899)
..+..+.|.++|.=+-| + ...+..++..+++.-..
T Consensus 74 ~V~eG~~V~~G~~L~~l---d-~~~~~~~~~~~~~~~~~ 108 (457)
T TIGR01000 74 YLKENKFVKKGDLLVVY---D-NGNEENQKQLLEQQLDN 108 (457)
T ss_pred EcCCCCEecCCCEEEEE---C-chHHHHHHHHHHHHHHH
Confidence 45566666665542222 1 12344555555554433
No 276
>PRK10132 hypothetical protein; Provisional
Probab=21.42 E-value=4.6e+02 Score=25.54 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002622 800 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASM 844 (899)
Q Consensus 800 ~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~ 844 (899)
..|++-++.|.......+.+=+..+-.++...+...|+..+++..
T Consensus 22 ~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 22 NQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 445555555444444555555566666666666666665554433
No 277
>PRK10404 hypothetical protein; Provisional
Probab=21.41 E-value=7.4e+02 Score=23.83 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=8.7
Q ss_pred HHHHHHHHhhhhcccchHHH
Q 002622 801 SLVDKLKAMANDVSGKSKEI 820 (899)
Q Consensus 801 ~l~~klk~m~~~~~~~~~~~ 820 (899)
.|.+-|+.|..++....+..
T Consensus 9 ~l~~dl~~L~~dle~Ll~~~ 28 (101)
T PRK10404 9 RIDDDLTLLSETLEEVLRSS 28 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444333333
No 278
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=21.32 E-value=1.2e+03 Score=26.34 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHH
Q 002622 623 FEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 702 (899)
Q Consensus 623 f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~s~kvei~~Ek~ 702 (899)
|+=.+..+=....-|.|-++.|+.|+.++ +|+ ++|-.+++.+..+|..-=.-+|+|--.-.....||+
T Consensus 124 FDFd~EV~PiLeVLVgKtlEQAl~EV~EE-----eEL-------~~lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEke 191 (291)
T PF06098_consen 124 FDFDEEVKPILEVLVGKTLEQALMEVMEE-----EEL-------AALRRQQRAFEELRNAELAEVQRLEEAEKRRREEKE 191 (291)
T ss_pred cchHhhhhhHHHHHHHHHHHHHHHHHHHH-----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555666788888888877654 333 344444555555554333333444333333344444
Q ss_pred HH
Q 002622 703 RI 704 (899)
Q Consensus 703 ~l 704 (899)
|.
T Consensus 192 rR 193 (291)
T PF06098_consen 192 RR 193 (291)
T ss_pred HH
Confidence 43
No 279
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.28 E-value=1.5e+02 Score=28.65 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=8.6
Q ss_pred HHHHHHHHhHHHHHH
Q 002622 671 SEMEILSKLRREVEE 685 (899)
Q Consensus 671 ~e~q~L~~Lr~EVde 685 (899)
.|++-|.+||..+++
T Consensus 69 ~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655544
No 280
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=21.25 E-value=1.1e+02 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhHH
Q 002622 727 VERKALSMARAWAEDEA---KRAREQAKALEGARDR 759 (899)
Q Consensus 727 ~EkkAL~m~RsWaEdEA---~r~~e~A~vLEea~~r 759 (899)
....++.||+.|.+.+. ..+..-.++|.+++++
T Consensus 41 l~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~ 76 (86)
T cd08779 41 LDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQ 76 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHH
Confidence 45678999999999882 3356677777777654
No 281
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.23 E-value=1.7e+03 Score=28.12 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHh
Q 002622 701 KERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 761 (899)
Q Consensus 701 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~ 761 (899)
-..+..+..+++.+.+.+.+.+.+++.+.+-+.. +.=..++........+.+++....+.
T Consensus 276 ~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (908)
T COG0419 276 LRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLE 335 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666667777777766666666655 22223334444445555555444444
No 282
>PRK01156 chromosome segregation protein; Provisional
Probab=21.14 E-value=1.7e+03 Score=27.89 Aligned_cols=148 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhh
Q 002622 612 VAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLM 691 (899)
Q Consensus 612 ~~~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~~~llKerAa~e~e~q~L~~Lr~EVde~~q~L~ 691 (899)
+..+.++++ .-+.++..=..+...+++.+.+...+|++...+.+.....+-+-+.-++.-.+.+..|+.++.++ +...
T Consensus 589 l~e~~~~l~-~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l-~~~~ 666 (895)
T PRK01156 589 SNEIKKQLN-DLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEI-DSII 666 (895)
T ss_pred HHHHHHHHH-HHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q ss_pred hcceehhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHhHHHhh
Q 002622 692 SNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM----ARAWAEDEAKRAREQAKALEGARDRWER 762 (899)
Q Consensus 692 s~kvei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m----~RsWaEdEA~r~~e~A~vLEea~~rW~~ 762 (899)
.+......+-.++..-...++.+.+.+..-...|+.+++.|.- ++.=.+ +.++..+.-+.++.+...|.+
T Consensus 667 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~-~~~~~~~~l~~~~~~~~~l~~ 740 (895)
T PRK01156 667 PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN-DINETLESMKKIKKAIGDLKR 740 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
No 283
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.08 E-value=1e+03 Score=28.05 Aligned_cols=67 Identities=27% Similarity=0.309 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 002622 679 LRREVEEQLESLMSNKVEISYEKERINMLRKEA-ENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGAR 757 (899)
Q Consensus 679 Lr~EVde~~q~L~s~kvei~~Ek~~l~kL~~~~-e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~ 757 (899)
++.|+.-+.+.|--+|-.+ +||+....|+ |.++-+|.+||.+|-- | -|.=+=.+.||||-+.|+-
T Consensus 242 ~~~e~~~~~~~LqEEr~R~----erLEeqlNd~~elHq~Ei~~LKqeLa~------~----EEK~~Yqs~eRaRdi~E~~ 307 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRY----ERLEEQLNDLTELHQNEIYNLKQELAS------M----EEKMAYQSYERARDIWEVM 307 (395)
T ss_pred HHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh------H----HHHHHHHHHHHHhHHHHHH
Confidence 4445555566655444322 3455544443 5566688889888742 1 1112335667777666654
Q ss_pred HH
Q 002622 758 DR 759 (899)
Q Consensus 758 ~r 759 (899)
..
T Consensus 308 Es 309 (395)
T PF10267_consen 308 ES 309 (395)
T ss_pred HH
Confidence 43
No 284
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.04 E-value=3.4e+02 Score=33.62 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCC
Q 002622 701 KERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKD 772 (899)
Q Consensus 701 k~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~ 772 (899)
+-+-|+|++|++.-++.+.++|-.++.++--|..|.--+|. |. +.++|++. ++.-|+...-.
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq-aq------~~~~El~~---~n~pkl~LP~s 160 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ-AQ------RQLEELRE---TNNPKLFLPFS 160 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH-HH------HHHHHHHh---hcCCceeeccc
Confidence 45668899999999999999999888888777777654432 22 23555554 34555554443
No 285
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=20.75 E-value=4.5e+02 Score=25.47 Aligned_cols=50 Identities=38% Similarity=0.414 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhH
Q 002622 705 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA-----KRAREQAKALEGARD 758 (899)
Q Consensus 705 ~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA-----~r~~e~A~vLEea~~ 758 (899)
..|+..+..+++.+..+..+||.||.|-..| -+|| |=-.|.|.+-.||++
T Consensus 2 ~~Lr~~v~~er~~~~~L~~ELEeER~AaAsA----A~EAMaMI~RLQ~EKAa~~mEA~Q 56 (94)
T PF04576_consen 2 ERLRRAVEAERKALAALYAELEEERSAAASA----ASEAMAMILRLQEEKAAVEMEARQ 56 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4577778888888888888888888765443 2333 233455666666654
No 286
>PRK14011 prefoldin subunit alpha; Provisional
Probab=20.37 E-value=9.2e+02 Score=24.55 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccc---c
Q 002622 702 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREES---D 778 (899)
Q Consensus 702 ~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsWaEdEA~r~~e~A~vLEea~~rW~~~gikv~vd~~~~~~~---~ 778 (899)
+.|+.+.-.++.=++.+..++..|.. |.++++=. +++. +.|+. -+...-|-|-+-.++-=.+ .
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~----L~~a~~e~-~~~i------e~L~~---l~~~~eiLVPLg~s~yV~g~i~d 68 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSS----IDMMKMEL-LKSI------ESMEG---LKTSEEILIPLGPGAFLKAKIVD 68 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHH------HHHHc---cCCCCeEEEEcCCCcEEeEEecC
Confidence 35677777777777777766666554 55555433 2222 34442 2233334443333332222 1
Q ss_pred cchhhhhcccccchHHHHHhHHHHHH-HHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002622 779 AAVMWVNAGKQFSVDQTVSRAQSLVD-KLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKAS 843 (899)
Q Consensus 779 ~~~~w~~~~~~~~~~~~~~ra~~l~~-klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~ 843 (899)
+.---..-|.-..||.++..|...++ |.+.|-. ...+.-++|..+-+.+..+-..|...+.++.
T Consensus 69 ~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~-~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~ 133 (144)
T PRK14011 69 PDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDK-TKKEGNKKIEELNKEITKLRKELEKRAQAIE 133 (144)
T ss_pred CCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346678888999999999965555 4444432 2223333333333444444444445444443
No 287
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=20.13 E-value=1.8e+03 Score=27.77 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 002622 816 KSKEIINTIIHKILLFISNLKK 837 (899)
Q Consensus 816 ~~~~~~~~~~~~i~~~i~~l~~ 837 (899)
-...||.|.++++-..|..++.
T Consensus 416 ~~~Giipral~~lF~~~~~~~~ 437 (670)
T KOG0239|consen 416 EDPGIIPRALEKLFRTITSLKS 437 (670)
T ss_pred ccCCccHHHHHHHHHHHHhhcc
Confidence 4778888998888888887775
No 288
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.05 E-value=7e+02 Score=23.03 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=29.9
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 002622 790 FSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWA 839 (899)
Q Consensus 790 ~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~ 839 (899)
-.|..+|+++++++.....+..... ...-+......+..-|..|+..+
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~~~--~~~e~~~~~~eL~~~l~~ie~~L 55 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSDTS--SSEELKWLKRELRNALQSIEWDL 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--CcHhHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999998887776 33333334444444444443333
No 289
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=20.04 E-value=7.2e+02 Score=23.23 Aligned_cols=45 Identities=29% Similarity=0.290 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002622 614 EVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDK 659 (899)
Q Consensus 614 ~~~~di~~~f~~el~~Er~~~~~vek~~eea~~eLe~~r~ere~e~ 659 (899)
.+++-+..+|.+.+..|=+.+.. |+.+.+.+.||+++-.+....+
T Consensus 6 ~~~~Q~~~~l~~~~~~Ef~~I~~-Er~v~~kLneLd~Li~eA~~r~ 50 (109)
T PF03980_consen 6 SVHQQMIEFLEENCKKEFEEILE-ERDVVEKLNELDKLIEEAKERK 50 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhH
Confidence 33444555555555555433332 4445555666666665544433
Done!