Query 002622
Match_columns 899
No_of_seqs 146 out of 191
Neff 3.1
Searched_HMMs 29240
Date Tue Mar 26 15:46:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002622.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1342-1346//hhsearch_pdb/002622hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pyw_A S-layer protein SAP; SL 1.0 1 1 213.8 14.9 156 389-582 17-174 (203)
2 4aq1_A SBSB protein; structura 1.0 1 1 212.3 0.0 154 388-583 13-168 (892)
3 3pyw_A S-layer protein SAP; SL 1.0 1 1 144.1 12.1 111 448-583 3-113 (203)
4 4aq1_A SBSB protein; structura 1.0 1 1 139.4 0.0 101 388-515 72-174 (892)
5 3vkg_A Dynein heavy chain, cyt 1.0 1 1 24.6 20.6 26 16-41 1029-1054(3245)
6 2i1j_A Moesin; FERM, coiled-co 1.0 1 1 23.8 6.4 91 624-714 320-420 (575)
7 3oja_B Anopheles plasmodium-re 1.0 1 1 20.9 14.1 26 664-689 527-552 (597)
8 2p22_A Suppressor protein STP2 1.0 1 1 19.0 12.2 141 606-751 8-157 (174)
9 3na7_A HP0958; flagellar bioge 1.0 1 1 17.9 21.1 168 588-768 16-194 (256)
10 3iox_A AGI/II, PA; alpha helix 1.0 1 1 17.8 12.5 97 587-714 13-109 (497)
No 1
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=1.00 E-value=1 Score=213.79 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=126.7
Q ss_pred HHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 799998614611248-9768999865999999999970312224346556542236787777558999999927999999
Q 002622 389 QGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLA 467 (899)
Q Consensus 389 qIeALAaLGVLkiiE-g~F~PnepVTRAEFARwLVRAls~L~Rnp~skI~Pa~~is~stepAFsDVspdDPdf~YIQAAA 467 (899)
.|+.|..+|++.+++ ++|+|+++|||+||+.||+++++. +. .....+.|.||+ +||++.+|+.++
T Consensus 17 ~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~~---~~~~~~~F~Dv~-~~w~~~~i~~a~ 82 (203)
T 3pyw_A 17 SINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------PI---DKDAKPSFADSQ-GQWYTPFIAAVE 82 (203)
T ss_dssp HHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------CC---CTTCCCSCGGGC-SSTTHHHHHHHH
T ss_pred HHHHHHHCCCEECCCCCEECCCCCCHHHHHHHHHHHHHCC----------CC---CCCCCCCCCCCC-CHHHHHHHHHHH
T ss_conf 9999998849754899808999885299999999998189----------87---768899898998-678999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8297445766656778999997548999585999999999-871048961346421036660136787900289999998
Q 002622 468 EAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKM-ALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADL 546 (899)
Q Consensus 468 EAGIIsGkLSG~~~~s~ddG~~tFkPDsPITRQELAswkV-ALe~~~LPead~k~L~~~sgFtD~dkIs~wA~~AV~adL 546 (899)
+.|||.|+. ++ |+|+++|||+||+.|++ ++.+.... . ......|.|...| .|+..+|....
T Consensus 83 ~~Gii~g~~-----------~~-F~P~~~iTR~e~a~~l~r~~~~~~~~--~---~~~~~~f~D~~~i-~wa~~~v~~~~ 144 (203)
T 3pyw_A 83 KAGVIKGTG-----------NG-FEPNGKIDRVSMASLLVEAYKLDTKV--N---GTPATKFKDLETL-NWGKEKANILV 144 (203)
T ss_dssp HTTSSCCCS-----------SC-CCTTSBCBHHHHHHHHHHHHTGGGGS--S---SCCCCCCHHHHTC-SSSHHHHHHHH
T ss_pred HCCCEECCC-----------CC-CCCCCCCCHHHHHHHHHHHHCCCCCC--C---CCCCCCCCCCCCC-HHHHHHHHHHH
T ss_conf 884853679-----------98-89989666999999999996465566--6---6667787788742-89999999999
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 316233311004888755799988299999999802
Q 002622 547 TAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 582 (899)
Q Consensus 547 ~aGdqsII~~vfG~tg~FqPnKPVTRAEAAAaL~~G 582 (899)
.. ||+. |..+.|+|++++||+|+|++|++.
T Consensus 145 ~~---Gi~~---g~~~~f~P~~~iTRaE~A~~l~r~ 174 (203)
T 3pyw_A 145 EL---GISV---GTGDQWEPKKTVTKAEAAQFIAKT 174 (203)
T ss_dssp HT---TCSC---CCSSCCCTTSBCBHHHHHHHHHHH
T ss_pred HC---CCEE---CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 87---5976---889976899887499999999999
No 2
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=1.00 E-value=1 Score=212.26 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=121.2
Q ss_pred HHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5799998614611248-976899986599999999997031222434655654223678777755899999992799999
Q 002622 388 VQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGL 466 (899)
Q Consensus 388 ~qIeALAaLGVLkiiE-g~F~PnepVTRAEFARwLVRAls~L~Rnp~skI~Pa~~is~stepAFsDVspdDPdf~YIQAA 466 (899)
..|+.|+.+|++++++ +.|+|+++|||+|||.||+|+++. +. .....+.|.||++ |+++||+.|
T Consensus 13 eaIe~LaekGIIkGY~DGTFrPdkpITRAEFAaMLvRALGL----------e~---~saas~sFSDVp~--Wya~yIaaA 77 (892)
T 4aq1_A 13 DAIDFLVSTGATKGKTETKFGVYDEITRLDAAVILARVLKL----------DV---GNAKDAGFTDVPK--DRAKYVNAL 77 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCC----------CC---CCCCCCCCCCCCH--HHHHHHHHH
T ss_conf 99999997878860789818799616399999999998188----------86---6556788776898--899999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98297445766656778999997548999585999999999-87104896134642103666013678790028999999
Q 002622 467 AEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKM-ALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLAD 545 (899)
Q Consensus 467 AEAGIIsGkLSG~~~~s~ddG~~tFkPDsPITRQELAswkV-ALe~~~LPead~k~L~~~sgFtD~dkIs~wA~~AV~ad 545 (899)
+++|||.|+.+ ++|+|+++|||+|||.|++ ++++. ... ....|.|...+ |+ ++|...
T Consensus 78 veaGIIsGy~D-----------GTFrPnqpITRAEaAvMLvRALgL~---~~~-----~~ssFkDV~s~--WA-eaIaaA 135 (892)
T 4aq1_A 78 VEAGVLNGKAP-----------GKFGAYDPLTRVEMAKIIANAHKLK---ADD-----VKLPFTDVNDT--WA-PYVKAL 135 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHCCCEECCCC-----------CCCCCCCCCCHHHHHHHHHHHHCCC---CCC-----CCCCCCCCCHH--HH-HHHHHH
T ss_conf 97888844889-----------8699997726999999999983787---756-----66774677277--99-999999
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 83162333110048887557999882999999998022
Q 002622 546 LTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGE 583 (899)
Q Consensus 546 L~aGdqsII~~vfG~tg~FqPnKPVTRAEAAAaL~~G~ 583 (899)
.. .+||.+. .++.|+|++++||+|||++|++.-
T Consensus 136 ve---~GIIsGy--~DGtFrPn~~ITRAEAAvmL~RAL 168 (892)
T 4aq1_A 136 YK---YEVTKGK--TPTSFGAYQNITRGDFAQFVYRAV 168 (892)
T ss_dssp --------------------------------------
T ss_pred HH---CCCEECC--CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98---5990658--998488999624999999999997
No 3
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=1.00 E-value=1 Score=144.11 Aligned_cols=111 Identities=22% Similarity=0.253 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
Q ss_conf 77558999999927999999829744576665677899999754899958599999999987104896134642103666
Q 002622 448 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSG 527 (899)
Q Consensus 448 pAFsDVspdDPdf~YIQAAAEAGIIsGkLSG~~~~s~ddG~~tFkPDsPITRQELAswkVALe~~~LPead~k~L~~~sg 527 (899)
..|+||+.+||++.+|+.+++.|||.|+.+ ++|+|+++|||+|++.|++.+.. ++... .....
T Consensus 3 ~~F~Dv~~~~wa~~~I~~l~~~gii~G~~d-----------g~F~P~~~iTR~e~a~~l~r~~~--~~~~~----~~~~~ 65 (203)
T 3pyw_A 3 KTFPDVPADHWGIDSINYLVEKGAVKGNDK-----------GMFEPGKELTRAEAATMMAQILN--LPIDK----DAKPS 65 (203)
T ss_dssp CCBTTBCTTSTTHHHHHHHHHTTSCCCCTT-----------SCCCTTCBCBHHHHHHHHHHHTT--CCCCT----TCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEECCCC-----------CEECCCCCCHHHHHHHHHHHHHC--CCCCC----CCCCC
T ss_conf 978289999678999999998849754899-----------80899988529999999999818--98776----88998
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 01367879002899999983162333110048887557999882999999998022
Q 002622 528 FIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGE 583 (899)
Q Consensus 528 FtD~dkIs~wA~~AV~adL~aGdqsII~~vfG~tg~FqPnKPVTRAEAAAaL~~G~ 583 (899)
|.|.. +.|+.++|...... |||.+. .++ |+|++++||+|+|++|++.-
T Consensus 66 F~Dv~--~~w~~~~i~~a~~~---Gii~g~--~~~-F~P~~~iTR~e~a~~l~r~~ 113 (203)
T 3pyw_A 66 FADSQ--GQWYTPFIAAVEKA---GVIKGT--GNG-FEPNGKIDRVSMASLLVEAY 113 (203)
T ss_dssp CGGGC--SSTTHHHHHHHHHT---TSSCCC--SSC-CCTTSBCBHHHHHHHHHHHH
T ss_pred CCCCC--CHHHHHHHHHHHHC---CCEECC--CCC-CCCCCCCCHHHHHHHHHHHH
T ss_conf 98998--67899999999988---485367--998-89989666999999999996
No 4
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=1.00 E-value=1 Score=139.40 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=83.0
Q ss_pred HHHHHHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5799998614611248-976899986599999999997031222434655654223678777755899999992799999
Q 002622 388 VQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGL 466 (899)
Q Consensus 388 ~qIeALAaLGVLkiiE-g~F~PnepVTRAEFARwLVRAls~L~Rnp~skI~Pa~~is~stepAFsDVspdDPdf~YIQAA 466 (899)
..|+++..+|++.+++ +.|+|+++|||+|||.||+|+++. +. ......|.|++ ++|+ +||+.+
T Consensus 72 ~yIaaAveaGIIsGy~DGTFrPnqpITRAEaAvMLvRALgL----------~~----~~~~ssFkDV~-s~WA-eaIaaA 135 (892)
T 4aq1_A 72 KYVNALVEAGVLNGKAPGKFGAYDPLTRVEMAKIIANAHKL----------KA----DDVKLPFTDVN-DTWA-PYVKAL 135 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCC----------CC----CCCCCCCCCCC-HHHH-HHHHHH
T ss_conf 99999997888844889869999772699999999998378----------77----56667746772-7799-999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCC
Q ss_conf 982974457666567789999975489995859999999998-7104896
Q 002622 467 AEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMA-LEKRQLP 515 (899)
Q Consensus 467 AEAGIIsGkLSG~~~~s~ddG~~tFkPDsPITRQELAswkVA-Le~~~LP 515 (899)
+++|||.|+.+ ++|+|+++|||+|||.|+.+ +.....|
T Consensus 136 ve~GIIsGy~D-----------GtFrPn~~ITRAEAAvmL~RALnlk~eP 174 (892)
T 4aq1_A 136 YKYEVTKGKTP-----------TSFGAYQNITRGDFAQFVYRAVNINAVP 174 (892)
T ss_dssp -----------------------------------------------CCC
T ss_pred HHCCCEECCCC-----------CCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 98599065899-----------8488999624999999999997342576
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=24.64 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=12.1
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 20002378656898213335442037
Q 002622 16 RLALNCWSSSCNSPSVLVRSRFKKLN 41 (899)
Q Consensus 16 r~~~~~~~~~~~~p~~~~r~~~~~~~ 41 (899)
|+-|-...-..-|||+.-|.-|.-.+
T Consensus 1029 ~liFEv~dL~~ASPATVSRcGmVy~~ 1054 (3245)
T 3vkg_A 1029 RVMFEVQDLKYATLATISRCGMVWFS 1054 (3245)
T ss_dssp EEEEEESCCTTCCHHHHHTSEEEECC
T ss_pred EEEEEECCCCCCCHHHHEEEEEEEEC
T ss_conf 79998152021672321002589974
No 6
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=1.00 E-value=1 Score=23.82 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998889886599999999999999999998989---------9889985455-677899999998699999999974312
Q 002622 624 EKELSMEREKIDVVEKMAEEARQELERLRAERE---------VDKIALMKER-AAIESEMEILSKLRREVEEQLESLMSN 693 (899)
Q Consensus 624 ~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere---------~e~~~llKer-aaie~e~q~L~~Lr~EVde~~q~L~s~ 693 (899)
..+|..|+.....+|+--.+...-|..+..+-. .+.+.+|-|+ --.+.+.++|...+.+.+++-++|...
T Consensus 320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 320 REKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99888899999999984899999999999999999999998699999999999999999999998799999999999998
Q ss_pred CEEHHHHHHHHHHHHHHHHHH
Q ss_conf 313236789999999999988
Q 002622 694 KVEISYEKERINMLRKEAENE 714 (899)
Q Consensus 694 k~ei~~Ek~~l~kL~~~~e~~ 714 (899)
...-.-|++.|+.-..+.+.+
T Consensus 400 ~~~~~~e~~~l~~~~~~~~~~ 420 (575)
T 2i1j_A 400 KNMEAAERQKLEDEIRAKQEE 420 (575)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 886799999999989998899
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=20.91 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45567789999999869999999997
Q 002622 664 KERAAIESEMEILSKLRREVEEQLES 689 (899)
Q Consensus 664 Keraaie~e~q~L~~Lr~EVde~~q~ 689 (899)
+.+.+++..++.+-.++.|++++-.+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 88776554201113677664889998
No 8
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=1.00 E-value=1 Score=19.03 Aligned_cols=141 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 766899999999999999998889886599999999----9999999999989899889985455677899999998699
Q 002622 606 SEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA----EEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRR 681 (899)
Q Consensus 606 ~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~----eea~~eLe~~r~ere~e~~~llKeraaie~e~q~L~~Lr~ 681 (899)
..|.+|++.++--|+++++.-.....+.++..+... -.-..+|......-+.....|-+++..++.+.+.|-.=..
T Consensus 8 ~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 8 TNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53799999999999999999999999999988899999999999999976899999999999999999999999998899
Q ss_pred HHHHHH-----HHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-----9743123132367899999999999889999986678999999999999768999999999999
Q 002622 682 EVEEQL-----ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAK 751 (899)
Q Consensus 682 EVde~~-----q~L~s~k~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsW~EdEA~r~~e~A~ 751 (899)
++.+.. ... +--++..+..-+.+..-++-.+..+|-++=|+|. +||.--+-=.+.=.|.+|.-|+
T Consensus 88 k~~e~~~~~~~~~~--diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~---~al~~g~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 88 KVQQFSSTSHVDDE--DVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLS---RMLHRGTIPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHTTSSCCCSS--CGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCC--CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998751788999--8556434885799999999989978999999999---9987598879999999999999
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=17.86 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999888999986678876689999999999999999888988659999999999999999999898998899854556
Q 002622 588 VNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERA 667 (899)
Q Consensus 588 v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKera 667 (899)
+-.++.+|+... ...-+-+..++.++ +.....+..-+..+..+++.....-.+++..+.-..+...-+.--+
T Consensus 16 lD~~i~~l~~~~------~~lp~el~~le~~~-~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~- 87 (256)
T 3na7_A 16 LDKEIDSLEPLI------REKRKDLDKALNDK-EAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK- 87 (256)
T ss_dssp HHHHHHHTHHHH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 999999999999------87589999999999-9999999999999999999999999789999999999999987258-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77899999998699999999974312313236789999999999988999998667899999999999976899999999
Q 002622 668 AIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAR 747 (899)
Q Consensus 668 aie~e~q~L~~Lr~EVde~~q~L~s~k~ei~~Ek~~l~kL~~~~e~~~q~i~~~k~~LE~EkkAL~m~RsW~EdEA~r~~ 747 (899)
-+..+..|.+|++.+-.+...-.-++.--.++++.+...++...+.+..++..|+..+..+.-..+=.+.+.....
T Consensus 88 ----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 88 ----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp ----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-----------HHHHHHCCCEEE
Q ss_conf 999999998-----------678764391999
Q 002622 748 EQAKALEGA-----------RDRWERQGIKVV 768 (899)
Q Consensus 748 e~A~vLEea-----------~~rW~~~gikv~ 768 (899)
++...|... -|+|. +|+-||
T Consensus 164 ~~r~~l~~~i~~~lL~~Yerir~~~-~g~avv 194 (256)
T 3na7_A 164 KKKEDLVEKTEPKIYSFYERIRRWA-KNTSIV 194 (256)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHH-GGGSEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 9999988569999999999999737-996699
No 10
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=1.00 E-value=1 Score=17.79 Aligned_cols=97 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999988899998667887668999999999999999988898865999999999999999999989899889985455
Q 002622 587 AVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKER 666 (899)
Q Consensus 587 ~v~eEL~RlEAE~~a~~av~~~~~l~~~~~~di~~~f~~el~~Er~~~~~vEk~~eea~~eLe~~r~ere~e~~~llKer 666 (899)
.+..||+|+++.| .|.++-++.++..-+.+-.+.+.--+.++..=+..++.-|++++.+-++.
T Consensus 13 ~yq~elarvqkan-----------------a~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dl 75 (497)
T 3iox_A 13 AYQTELARVQKAN-----------------ADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADL 75 (497)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999877-----------------88899999999987656678898899999888887777899999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHH
Q ss_conf 677899999998699999999974312313236789999999999988
Q 002622 667 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE 714 (899)
Q Consensus 667 aaie~e~q~L~~Lr~EVde~~q~L~s~k~ei~~Ek~~l~kL~~~~e~~ 714 (899)
|+...+ +-.--.....|-.++.++++.+.++|.+
T Consensus 76 akY~~~--------------~AeY~~kl~aYe~~~~~~~k~lae~ek~ 109 (497)
T 3iox_A 76 AKYQKD--------------LADYPVKLKAYEDEQTSIKAALAELEKH 109 (497)
T ss_dssp HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999888--------------9999999998899999999999888644
Done!