Query 002622
Match_columns 899
No_of_seqs 146 out of 191
Neff 3.1
Searched_HMMs 13730
Date Tue Mar 26 15:51:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002622.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1342-1346//hhsearch_scop/002622hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5na_ a.24.10.3 (A:) Chemota 4.8 74 0.0054 7.2 2.8 88 746-835 13-102 (128)
2 d1y74a1 a.194.1.1 (A:17-73) Li 4.2 88 0.0064 6.7 4.9 46 791-839 2-47 (57)
3 d1zl8a1 a.194.1.1 (A:4-53) Lin 3.6 1E+02 0.0076 6.2 2.7 44 791-837 1-44 (50)
4 d1tqga_ a.24.10.3 (A:) Chemota 3.5 1.1E+02 0.0079 6.1 3.2 34 663-697 48-81 (105)
5 d2i5ua1 a.275.1.1 (A:2-75) Unc 3.3 1.2E+02 0.0087 5.8 2.6 15 491-505 10-24 (74)
6 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 2.9 1.4E+02 0.0099 5.4 -0.0 13 446-458 39-51 (76)
7 d1t3ta3 d.284.1.2 (A:1-152) FG 2.7 1.5E+02 0.011 5.1 1.7 103 491-594 41-145 (152)
8 d1s3si_ d.15.1.2 (I:) p47 {Rat 2.2 1.9E+02 0.014 4.4 0.0 8 11-18 20-27 (50)
9 d1iu4a_ d.3.1.8 (A:) Microbial 2.1 2E+02 0.015 4.2 0.6 53 613-665 106-164 (331)
10 d1c0pa1 c.4.1.2 (A:999-1193,A: 2.0 2.1E+02 0.015 4.1 0.5 18 97-121 11-28 (268)
No 1
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.83 E-value=74 Score=7.22 Aligned_cols=88 Identities=8% Similarity=-0.018 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCEE-EECCCCCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999999867876439199-97687321122-220243025544267889868999999997533105642999999
Q 002622 746 AREQAKALEGARDRWERQGIKV-VVDKDLREESD-AAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINT 823 (899)
Q Consensus 746 ~~e~A~vLEea~~rW~~~gikv-~vd~~~~e~~~-~~~~w~~~~~~~~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~ 823 (899)
+.++-..|+..-.+|++.+-.. .++.=+|.=-+ -|.. ..-+-..+....++.+++++.++.-...+.....+++.+
T Consensus 13 a~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a--~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~~~~~l~~ 90 (128)
T d1i5na_ 13 ADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGA--GTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLE 90 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999999999999878894899999999999771088--636849999999999999999983898989999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 002622 824 IIHKILLFISNL 835 (899)
Q Consensus 824 ~~~~i~~~i~~l 835 (899)
.+..++.++..+
T Consensus 91 ~~d~l~~~l~~~ 102 (128)
T d1i5na_ 91 TKDIMQEQLDAY 102 (128)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.18 E-value=88 Score=6.69 Aligned_cols=46 Identities=17% Similarity=0.399 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2678898689999999975331056429999999999999999999999
Q 002622 791 SVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWA 839 (899)
Q Consensus 791 ~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~~~ 839 (899)
.++.-|+||--|++||+. .+.+..--+..+.+|.| ..|...+||--
T Consensus 2 ~L~rDv~RaieLle~LQ~-~gevp~~KL~aLqkVLq--SdF~~avREVY 47 (57)
T d1y74a1 2 GLERDVSRAVELLERLQR-SGELPPQKLQALQRVLQ--SRFCSAIREVY 47 (57)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf 606889999999999988-69998399999999999--99999999999
No 3
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=3.65 E-value=1e+02 Score=6.19 Aligned_cols=44 Identities=11% Similarity=0.369 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26788986899999999753310564299999999999999999999
Q 002622 791 SVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 837 (899)
Q Consensus 791 ~~~~~~~ra~~l~~klk~m~~~~~~~~~~~~~~~~~~i~~~i~~l~~ 837 (899)
+++.-|+||--|++||+. .+++...-+..+.+|.| ..|...+||
T Consensus 1 ~L~rDv~RaieLle~Lq~-sgevp~~KL~aLqkVLq--SdF~~avRE 44 (50)
T d1zl8a1 1 NLERDVQRILELMEHVQK-TGEVNNAKLASLQQVLQ--SEFFGAVRE 44 (50)
T ss_dssp HHHHHHHHHHHHHHHHGG-GSSSTHHHHHHHHHHHS--CSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 905689999999999988-69998699999999999--999999999
No 4
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=3.53 E-value=1.1e+02 Score=6.08 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEH
Q ss_conf 54556778999999986999999999743123132
Q 002622 663 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 697 (899)
Q Consensus 663 lKeraaie~e~q~L~~Lr~EVde~~q~L~s~k~ei 697 (899)
||+-|++- .-..+..+-+.+++.++.+...+...
T Consensus 48 LKG~a~~~-gl~~i~~lah~lE~~l~~~~~~~~~~ 81 (105)
T d1tqga_ 48 LKGMAGTM-GFSSMAKLCHTLENILDKARNSEIKI 81 (105)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HCCCHHHC-CHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 74741313-88999999999999999998689999
No 5
>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
Probab=3.27 E-value=1.2e+02 Score=5.80 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=6.9
Q ss_pred CCCCCCCCHHHHHHH
Q ss_conf 489995859999999
Q 002622 491 FLPESPLSRQDLVSW 505 (899)
Q Consensus 491 FkPDsPITRQELAsw 505 (899)
|+.=+|++.+++-.|
T Consensus 10 fG~lsp~~~e~i~~w 24 (74)
T d2i5ua1 10 FGLMSSKTMTDFDYW 24 (74)
T ss_dssp SCSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 877589999999999
No 6
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=2.91 E-value=1.4e+02 Score=5.41 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 7777558999999
Q 002622 446 TDLAFDDITPEDP 458 (899)
Q Consensus 446 tepAFsDVspdDP 458 (899)
..-.|.||++++|
T Consensus 39 V~V~i~Ev~~enW 51 (76)
T d1gyxa_ 39 ISIALQQIQPESW 51 (76)
T ss_dssp CEEEEEECCGGGH
T ss_pred EEEEEEECCHHHH
T ss_conf 9999998797760
No 7
>d1t3ta3 d.284.1.2 (A:1-152) FGAM synthase PurL, PurS-like domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.68 E-value=1.5e+02 Score=5.09 Aligned_cols=103 Identities=15% Similarity=0.009 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 48999585999999999871048961346421036660136787900289999998316233311004888755799988
Q 002622 491 FLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPV 570 (899)
Q Consensus 491 FkPDsPITRQELAswkVALe~~~LPead~k~L~~~sgFtD~dkIs~wA~~AV~adL~aGdqsII~~vfG~tg~FqPnKPV 570 (899)
...+.+++.++...+.-.|.+...............-.-=.+-|+||.-.|.-+....|-..|.+.-.|..-.|. .++.
T Consensus 41 v~~~~~l~~~~~~~L~~LL~~~~~~~~~~~~~~~~~V~PR~gtiSPWSSKAtdI~~~cGl~~V~RIERg~~y~~~-~~~~ 119 (152)
T d1t3ta3 41 ADLNAPLNDSEQAQLTRLLQYGPALSSHTPAGKLLLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIE-ASTL 119 (152)
T ss_dssp EEESSCCCHHHHHHHHHHTCCSCCCCCCCCCSEEEEEEECTTCCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEE-CTTC
T ss_pred HHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEEEEEC-CCCC
T ss_conf 110578999999999998676843346686676699960365015418889999998298302302004788843-8877
Q ss_pred CHHHHHHHH--HCCCCHHHHHHHHHH
Q ss_conf 299999999--802202358999988
Q 002622 571 TNAQAAVAL--AIGEASDAVNEELQR 594 (899)
Q Consensus 571 TRAEAAAaL--~~G~~~e~v~eEL~R 594 (899)
+.++...++ -.-||.|.+..++.-
T Consensus 120 ~~~~~~~~~~~L~DrMTE~v~~~~~~ 145 (152)
T d1t3ta3 120 TAEQWRQVAAELHDRMMETVFSSLTD 145 (152)
T ss_dssp CHHHHHHHHHTTSCTTTEEEESSGGG
T ss_pred CHHHHHHHHHHCCCCCHHHHHCCHHH
T ss_conf 88999887764537767888667356
No 8
>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.22 E-value=1.9e+02 Score=4.41 Aligned_cols=8 Identities=63% Similarity=0.949 Sum_probs=0.0
Q ss_pred CCCEEHHH
Q ss_conf 52000200
Q 002622 11 TSLQLRLA 18 (899)
Q Consensus 11 ~s~qlr~~ 18 (899)
|++|+||+
T Consensus 20 T~iQiRL~ 27 (50)
T d1s3si_ 20 TNIQIRLA 27 (50)
T ss_dssp --------
T ss_pred EEEEEEEC
T ss_conf 68999947
No 9
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase {Streptoverticillium mobaraense [TaxId: 35621]}
Probab=2.08 E-value=2e+02 Score=4.18 Aligned_cols=53 Identities=32% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999-99999988898865999--99999999999---999998989988998545
Q 002622 613 AEVEKEI-NESFEKELSMEREKIDV--VEKMAEEARQE---LERLRAEREVDKIALMKE 665 (899)
Q Consensus 613 ~~~~~di-~~~f~~el~~Er~~~~~--vEk~~eea~~e---Le~~r~ere~e~~~llKe 665 (899)
++.+|-| +.+|+++.--.|-|-.+ +.|-++.|..| |.+|+++--.-+.+|+.|
T Consensus 106 aefegriak~sfde~kgfkrardvasvmnkale~ahdeg~y~~nlk~~l~n~ndal~~e 164 (331)
T d1iu4a_ 106 AEFEGRVAKESFDEEKGFQRAREVASVMNRALENAHDESAYLDNLKKELANGNDALRNE 164 (331)
T ss_dssp HHHHHHHHHHHBCHHHHHHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHTTCGGGGC
T ss_pred HHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCC
T ss_conf 45425000113454434157888999999987611330157777776512674054403
No 10
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Probab=2.04 E-value=2.1e+02 Score=4.11 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 1111023678764345665202433
Q 002622 97 IVQAGVAGVVLFAGLTFAALSLSKR 121 (899)
Q Consensus 97 ~~~~gvag~~l~~gl~~aa~s~~k~ 121 (899)
+||+|++|+ .+|+.|+++
T Consensus 11 VIGaGiaGl-------~~A~~L~~~ 28 (268)
T d1c0pa1 11 VLGSGVIGL-------SSALILARK 28 (268)
T ss_dssp EECCSHHHH-------HHHHHHHHT
T ss_pred EECCCHHHH-------HHHHHHHHC
T ss_conf 999509999-------999999978
Done!