Query 002623
Match_columns 899
No_of_seqs 560 out of 5117
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 3E-122 7E-127 1060.1 74.0 726 82-888 1-730 (786)
2 TIGR03346 chaperone_ClpB ATP-d 100.0 1E-103 2E-108 961.7 89.3 803 83-892 1-805 (852)
3 PRK10865 protein disaggregatio 100.0 2E-103 4E-108 954.5 86.3 807 78-893 1-809 (857)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 4E-103 1E-107 946.9 84.2 786 83-892 1-810 (852)
5 CHL00095 clpC Clp protease ATP 100.0 3E-100 6E-105 929.8 80.2 747 79-891 1-760 (821)
6 KOG1051 Chaperone HSP104 and r 100.0 1E-96 2E-101 859.0 50.7 771 75-872 4-791 (898)
7 TIGR02639 ClpA ATP-dependent C 100.0 1.4E-93 3E-98 862.4 69.9 677 83-892 1-691 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 5E-91 1.1E-95 824.9 69.7 678 83-893 2-696 (758)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.7E-45 1E-49 397.3 29.6 477 253-891 188-729 (802)
10 KOG0730 AAA+-type ATPase [Post 100.0 2.9E-39 6.2E-44 358.6 29.2 401 272-893 214-650 (693)
11 TIGR01243 CDC48 AAA family ATP 100.0 5.8E-34 1.3E-38 345.9 34.2 441 252-891 175-668 (733)
12 KOG0736 Peroxisome assembly fa 100.0 8.6E-31 1.9E-35 293.2 31.3 436 256-893 402-893 (953)
13 KOG0735 AAA+-type ATPase [Post 100.0 1.6E-29 3.5E-34 280.2 29.1 411 275-890 430-880 (952)
14 COG0466 Lon ATP-dependent Lon 99.9 6.6E-25 1.4E-29 246.7 30.1 317 527-887 189-533 (782)
15 COG2204 AtoC Response regulato 99.9 1.9E-24 4.2E-29 239.4 21.5 265 595-894 90-358 (464)
16 KOG0741 AAA+-type ATPase [Post 99.9 1.8E-23 3.9E-28 225.5 26.2 174 267-457 247-439 (744)
17 TIGR00763 lon ATP-dependent pr 99.9 5.8E-23 1.2E-27 250.2 33.7 318 527-889 186-532 (775)
18 COG0464 SpoVK ATPases of the A 99.9 6.1E-23 1.3E-27 239.8 27.9 413 267-890 9-457 (494)
19 COG2256 MGS1 ATPase related to 99.9 1.8E-23 4E-28 221.4 19.8 195 243-476 12-218 (436)
20 PF07724 AAA_2: AAA domain (Cd 99.9 1.9E-24 4.2E-29 213.7 11.0 155 677-846 1-171 (171)
21 COG1222 RPT1 ATP-dependent 26S 99.9 8.4E-23 1.8E-27 212.9 19.1 198 253-478 149-372 (406)
22 TIGR00382 clpX endopeptidase C 99.9 1.7E-22 3.8E-27 224.1 21.4 238 640-892 68-364 (413)
23 COG3829 RocR Transcriptional r 99.9 5.7E-23 1.2E-27 226.2 17.2 217 647-894 243-463 (560)
24 COG0542 clpA ATP-binding subun 99.9 5.8E-22 1.2E-26 230.4 26.0 179 256-454 492-733 (786)
25 COG3604 FhlA Transcriptional r 99.9 7E-23 1.5E-27 222.1 16.3 215 649-895 223-441 (550)
26 PRK10787 DNA-binding ATP-depen 99.9 2.1E-21 4.5E-26 233.6 29.7 313 528-889 189-533 (784)
27 KOG2004 Mitochondrial ATP-depe 99.9 8.1E-22 1.8E-26 220.0 24.0 239 612-891 375-629 (906)
28 COG1223 Predicted ATPase (AAA+ 99.9 1.2E-22 2.6E-27 201.7 13.0 189 246-457 112-318 (368)
29 PF05496 RuvB_N: Holliday junc 99.9 2.8E-22 6.1E-27 200.2 15.0 189 243-475 12-226 (233)
30 KOG0733 Nuclear AAA ATPase (VC 99.9 8.6E-22 1.9E-26 216.2 18.4 251 191-475 463-730 (802)
31 PRK05342 clpX ATP-dependent pr 99.9 1.2E-21 2.6E-26 219.1 19.7 240 640-893 62-359 (412)
32 TIGR02639 ClpA ATP-dependent C 99.9 4.2E-20 9E-25 224.1 31.4 178 256-454 455-690 (731)
33 COG1222 RPT1 ATP-dependent 26S 99.9 9.3E-22 2E-26 205.1 14.3 192 647-891 149-368 (406)
34 TIGR02974 phageshock_pspF psp 99.9 3.1E-21 6.7E-26 211.5 18.7 213 651-895 1-218 (329)
35 CHL00195 ycf46 Ycf46; Provisio 99.9 1.6E-19 3.5E-24 205.7 33.1 185 649-891 228-440 (489)
36 KOG0730 AAA+-type ATPase [Post 99.9 9.1E-21 2E-25 211.8 17.5 176 274-478 466-652 (693)
37 KOG0734 AAA+-type ATPase conta 99.8 1.6E-20 3.5E-25 203.0 17.3 205 250-482 299-525 (752)
38 KOG0727 26S proteasome regulat 99.8 1.3E-20 2.8E-25 186.1 14.8 191 648-891 154-372 (408)
39 CHL00095 clpC Clp protease ATP 99.8 5.4E-19 1.2E-23 216.8 32.5 204 255-476 509-783 (821)
40 KOG0738 AAA+-type ATPase [Post 99.8 1.3E-19 2.8E-24 189.9 20.9 198 252-477 209-431 (491)
41 PRK11608 pspF phage shock prot 99.8 1.1E-19 2.3E-24 199.8 20.5 216 648-895 5-225 (326)
42 PRK11034 clpA ATP-dependent Cl 99.8 1.8E-18 3.8E-23 206.7 31.7 200 256-476 459-717 (758)
43 TIGR01817 nifA Nif-specific re 99.8 1.1E-19 2.4E-24 214.0 20.9 215 648-895 195-413 (534)
44 PRK10820 DNA-binding transcrip 99.8 2.3E-19 5E-24 209.2 21.5 217 647-895 202-422 (520)
45 PF05496 RuvB_N: Holliday junc 99.8 9E-20 2E-24 182.3 15.4 169 647-871 22-198 (233)
46 PRK05022 anaerobic nitric oxid 99.8 2.3E-19 5E-24 209.3 21.5 216 648-895 186-405 (509)
47 PRK15424 propionate catabolism 99.8 2.8E-19 6.1E-24 205.8 20.0 214 648-895 218-450 (538)
48 TIGR02329 propionate_PrpR prop 99.8 3E-19 6.4E-24 206.0 20.2 214 648-895 211-435 (526)
49 KOG0736 Peroxisome assembly fa 99.8 2.6E-19 5.7E-24 201.7 19.1 196 253-475 670-892 (953)
50 COG1221 PspF Transcriptional r 99.8 1.1E-19 2.4E-24 198.3 15.5 215 645-894 74-293 (403)
51 KOG2028 ATPase related to the 99.8 1.2E-19 2.5E-24 188.2 14.0 184 243-456 126-328 (554)
52 PRK14956 DNA polymerase III su 99.8 4.6E-19 9.9E-24 198.2 19.5 204 243-477 6-229 (484)
53 COG3283 TyrR Transcriptional r 99.8 3.7E-19 8.1E-24 184.3 17.2 212 647-894 202-416 (511)
54 KOG0989 Replication factor C, 99.8 2.9E-19 6.4E-24 182.9 15.8 206 243-476 24-236 (346)
55 PF00158 Sigma54_activat: Sigm 99.8 3.3E-19 7.1E-24 176.0 15.2 163 651-845 1-164 (168)
56 CHL00195 ycf46 Ycf46; Provisio 99.8 1.3E-18 2.8E-23 198.3 20.2 201 252-478 225-444 (489)
57 PRK07003 DNA polymerase III su 99.8 2E-18 4.3E-23 199.2 21.2 204 243-477 4-227 (830)
58 TIGR02881 spore_V_K stage V sp 99.8 2.3E-18 4.9E-23 184.1 20.0 213 253-478 4-238 (261)
59 TIGR03346 chaperone_ClpB ATP-d 99.8 3.9E-17 8.5E-22 200.9 33.7 182 255-454 565-804 (852)
60 PRK13342 recombination factor 99.8 2.8E-18 6.1E-23 195.3 20.4 195 244-476 1-202 (413)
61 PRK15429 formate hydrogenlyase 99.8 3.2E-18 7E-23 207.2 21.8 216 648-895 375-594 (686)
62 COG2255 RuvB Holliday junction 99.8 1.3E-18 2.8E-23 176.4 15.1 192 245-480 16-233 (332)
63 KOG0739 AAA+-type ATPase [Post 99.8 6.1E-19 1.3E-23 178.4 12.7 186 253-460 131-337 (439)
64 PRK03992 proteasome-activating 99.8 5.1E-18 1.1E-22 190.9 21.5 198 253-478 129-352 (389)
65 COG1223 Predicted ATPase (AAA+ 99.8 5.9E-19 1.3E-23 175.6 12.1 171 644-870 116-302 (368)
66 TIGR02915 PEP_resp_reg putativ 99.8 1.1E-17 2.4E-22 193.8 24.5 261 600-895 92-357 (445)
67 PRK12323 DNA polymerase III su 99.8 2.2E-18 4.8E-23 196.6 18.1 203 243-476 4-231 (700)
68 PRK10923 glnG nitrogen regulat 99.8 9.3E-18 2E-22 195.7 23.1 254 604-894 98-355 (469)
69 PLN00020 ribulose bisphosphate 99.8 2.9E-18 6.3E-23 182.4 16.9 159 272-454 144-328 (413)
70 PRK11388 DNA-binding transcrip 99.8 3.8E-18 8.3E-23 205.5 20.3 214 647-895 323-539 (638)
71 CHL00181 cbbX CbbX; Provisiona 99.8 4.2E-18 9.1E-23 183.0 17.8 183 638-870 12-214 (287)
72 CHL00181 cbbX CbbX; Provisiona 99.8 2.1E-17 4.6E-22 177.6 21.6 189 276-477 59-253 (287)
73 PRK14960 DNA polymerase III su 99.8 8.7E-18 1.9E-22 192.3 19.5 204 243-477 3-226 (702)
74 PTZ00454 26S protease regulato 99.8 9.9E-18 2.1E-22 187.4 18.8 199 253-479 143-367 (398)
75 TIGR02880 cbbX_cfxQ probable R 99.8 5E-18 1.1E-22 182.7 15.8 180 640-869 13-212 (284)
76 PRK14949 DNA polymerase III su 99.8 9.9E-18 2.1E-22 197.2 19.2 203 243-476 4-226 (944)
77 COG5271 MDN1 AAA ATPase contai 99.8 4.6E-16 1E-20 183.4 32.4 151 681-865 890-1047(4600)
78 TIGR01241 FtsH_fam ATP-depende 99.8 2.2E-17 4.8E-22 192.4 21.2 200 251-478 51-275 (495)
79 PRK07994 DNA polymerase III su 99.8 2.5E-17 5.5E-22 191.9 20.3 204 243-477 4-227 (647)
80 PLN03025 replication factor C 99.8 1.1E-17 2.4E-22 184.1 16.5 193 244-472 2-202 (319)
81 KOG0731 AAA+-type ATPase conta 99.8 1.2E-17 2.7E-22 192.9 17.3 198 252-476 308-531 (774)
82 PRK13341 recombination factor 99.8 2E-17 4.3E-22 196.8 19.4 198 243-476 16-223 (725)
83 TIGR03345 VI_ClpV1 type VI sec 99.8 2.4E-16 5.2E-21 192.3 29.2 183 255-455 566-810 (852)
84 COG0464 SpoVK ATPases of the A 99.7 4.6E-17 1E-21 190.5 21.8 183 274-482 274-466 (494)
85 PRK14964 DNA polymerase III su 99.7 5E-17 1.1E-21 184.3 20.5 204 244-478 2-225 (491)
86 PRK11361 acetoacetate metaboli 99.7 1.1E-16 2.5E-21 186.1 24.1 258 603-895 98-361 (457)
87 COG2256 MGS1 ATPase related to 99.7 6.8E-18 1.5E-22 179.4 12.4 169 649-888 24-199 (436)
88 PRK14962 DNA polymerase III su 99.7 5.4E-17 1.2E-21 185.2 20.7 203 243-476 2-224 (472)
89 PRK14958 DNA polymerase III su 99.7 3.6E-17 7.9E-22 188.6 19.3 204 243-477 4-227 (509)
90 TIGR02902 spore_lonB ATP-depen 99.7 2.2E-17 4.7E-22 192.4 17.5 215 241-478 51-312 (531)
91 TIGR03689 pup_AAA proteasome A 99.7 2E-17 4.4E-22 188.0 16.5 177 250-433 177-380 (512)
92 KOG0735 AAA+-type ATPase [Post 99.7 2.2E-17 4.8E-22 184.5 16.0 174 274-475 699-882 (952)
93 TIGR01243 CDC48 AAA family ATP 99.7 6.3E-17 1.4E-21 197.2 21.5 197 253-478 451-672 (733)
94 PTZ00361 26 proteosome regulat 99.7 2.6E-17 5.6E-22 185.0 16.7 201 250-478 178-404 (438)
95 KOG0728 26S proteasome regulat 99.7 1.8E-17 4E-22 163.8 13.2 155 270-442 175-342 (404)
96 TIGR02880 cbbX_cfxQ probable R 99.7 2E-16 4.3E-21 170.4 22.2 166 276-454 58-227 (284)
97 COG5271 MDN1 AAA ATPase contai 99.7 2.2E-16 4.8E-21 186.1 23.6 151 274-454 886-1061(4600)
98 KOG0737 AAA+-type ATPase [Post 99.7 2.6E-17 5.5E-22 173.4 14.5 195 253-476 90-309 (386)
99 KOG0727 26S proteasome regulat 99.7 1.8E-17 3.9E-22 164.0 12.5 152 272-441 185-349 (408)
100 CHL00176 ftsH cell division pr 99.7 1.3E-16 2.9E-21 187.6 22.1 198 252-477 180-402 (638)
101 PRK14957 DNA polymerase III su 99.7 1.1E-16 2.3E-21 184.2 20.5 205 243-478 4-228 (546)
102 TIGR01818 ntrC nitrogen regula 99.7 2.8E-16 6.1E-21 183.0 24.2 255 604-894 93-351 (463)
103 PRK15115 response regulator Gl 99.7 1.8E-16 3.9E-21 183.6 22.1 247 606-895 102-352 (444)
104 KOG0652 26S proteasome regulat 99.7 5.9E-17 1.3E-21 161.1 15.2 172 253-442 169-366 (424)
105 KOG0734 AAA+-type ATPase conta 99.7 3.1E-17 6.7E-22 177.9 14.2 187 647-889 302-515 (752)
106 PRK14952 DNA polymerase III su 99.7 2E-16 4.3E-21 183.7 21.7 202 245-477 3-226 (584)
107 KOG0740 AAA+-type ATPase [Post 99.7 5.6E-17 1.2E-21 177.5 16.1 198 251-475 149-368 (428)
108 COG2255 RuvB Holliday junction 99.7 7.2E-17 1.6E-21 163.8 15.6 170 647-872 24-201 (332)
109 PRK14961 DNA polymerase III su 99.7 1.1E-16 2.4E-21 178.9 18.9 204 243-477 4-227 (363)
110 PRK00080 ruvB Holliday junctio 99.7 1.2E-16 2.5E-21 176.9 18.8 189 246-478 16-230 (328)
111 PRK14951 DNA polymerase III su 99.7 5.7E-16 1.2E-20 180.4 25.3 204 243-477 4-232 (618)
112 PRK07764 DNA polymerase III su 99.7 5.1E-16 1.1E-20 186.9 25.2 203 244-477 4-228 (824)
113 PRK05201 hslU ATP-dependent pr 99.7 6.9E-17 1.5E-21 176.4 15.5 222 641-893 7-382 (443)
114 PRK06645 DNA polymerase III su 99.7 2.8E-16 6E-21 179.8 20.5 205 243-478 9-237 (507)
115 TIGR02881 spore_V_K stage V sp 99.7 1.8E-16 3.8E-21 169.6 17.2 180 650-886 7-205 (261)
116 TIGR02902 spore_lonB ATP-depen 99.7 1.4E-16 3E-21 185.7 17.4 205 648-898 64-302 (531)
117 TIGR00635 ruvB Holliday juncti 99.7 4.7E-16 1E-20 170.9 20.4 182 253-478 2-209 (305)
118 PRK08451 DNA polymerase III su 99.7 5.4E-16 1.2E-20 177.4 21.4 205 243-478 2-226 (535)
119 PRK14959 DNA polymerase III su 99.7 3.8E-16 8.3E-21 180.3 19.9 202 243-475 4-225 (624)
120 PRK08691 DNA polymerase III su 99.7 4.3E-16 9.2E-21 180.4 20.1 204 243-477 4-227 (709)
121 TIGR01242 26Sp45 26S proteasom 99.7 4.4E-16 9.6E-21 174.7 19.8 199 252-478 119-343 (364)
122 CHL00206 ycf2 Ycf2; Provisiona 99.7 3.9E-16 8.4E-21 192.2 19.9 181 272-480 1626-1859(2281)
123 PF01078 Mg_chelatase: Magnesi 99.7 3.1E-17 6.7E-22 163.5 8.0 187 648-856 2-206 (206)
124 PRK14969 DNA polymerase III su 99.7 1.9E-15 4.2E-20 175.5 23.7 204 243-477 4-227 (527)
125 PHA02544 44 clamp loader, smal 99.7 4.6E-16 9.9E-21 171.8 17.4 186 243-455 9-200 (316)
126 PRK05563 DNA polymerase III su 99.7 1.1E-15 2.5E-20 178.7 21.5 204 243-477 4-227 (559)
127 COG1219 ClpX ATP-dependent pro 99.7 2.1E-16 4.6E-21 162.1 13.2 237 640-890 52-345 (408)
128 KOG0991 Replication factor C, 99.7 1.1E-16 2.3E-21 157.1 10.3 191 240-458 12-208 (333)
129 PRK10865 protein disaggregatio 99.7 1.2E-14 2.5E-19 178.3 30.2 183 254-454 567-807 (857)
130 TIGR00390 hslU ATP-dependent p 99.7 4E-16 8.7E-21 170.3 15.2 221 642-893 5-380 (441)
131 KOG0729 26S proteasome regulat 99.7 1.2E-16 2.6E-21 159.3 10.2 197 253-477 175-397 (435)
132 PRK05896 DNA polymerase III su 99.7 1.2E-15 2.7E-20 175.2 19.8 204 243-477 4-227 (605)
133 KOG0989 Replication factor C, 99.7 3.9E-16 8.4E-21 160.2 13.9 163 648-871 35-207 (346)
134 KOG0728 26S proteasome regulat 99.7 2.7E-16 5.9E-21 155.6 11.5 195 644-891 142-364 (404)
135 PRK09111 DNA polymerase III su 99.7 1.9E-15 4.1E-20 176.7 20.7 204 243-477 12-240 (598)
136 COG0465 HflB ATP-dependent Zn 99.7 5.2E-16 1.1E-20 176.9 15.6 220 252-500 147-391 (596)
137 PRK03992 proteasome-activating 99.7 3.3E-16 7.2E-21 176.3 14.0 194 645-891 127-348 (389)
138 PRK14956 DNA polymerase III su 99.7 4.9E-16 1.1E-20 174.0 15.0 184 648-889 17-210 (484)
139 PRK07133 DNA polymerase III su 99.7 2.4E-15 5.2E-20 176.2 21.0 203 243-476 6-225 (725)
140 PRK14963 DNA polymerase III su 99.7 2.4E-15 5.1E-20 173.2 20.4 201 245-476 4-223 (504)
141 KOG0726 26S proteasome regulat 99.7 5.3E-17 1.1E-21 164.0 5.8 171 252-440 182-378 (440)
142 PRK14965 DNA polymerase III su 99.7 1.8E-15 3.9E-20 177.8 19.2 204 244-478 5-228 (576)
143 PTZ00454 26S protease regulato 99.7 5.8E-16 1.3E-20 173.2 14.1 194 646-892 142-363 (398)
144 PRK07003 DNA polymerase III su 99.7 6.4E-16 1.4E-20 178.6 14.7 171 648-869 15-195 (830)
145 KOG0731 AAA+-type ATPase conta 99.7 5.4E-16 1.2E-20 179.4 14.1 189 647-891 309-529 (774)
146 COG2812 DnaX DNA polymerase II 99.7 3E-15 6.6E-20 168.9 19.8 205 243-478 4-228 (515)
147 PRK04195 replication factor C 99.7 8.4E-16 1.8E-20 178.4 15.4 184 243-457 2-195 (482)
148 PRK12323 DNA polymerase III su 99.7 3E-16 6.5E-21 179.3 11.1 172 648-869 15-200 (700)
149 PRK14949 DNA polymerase III su 99.7 3.9E-16 8.5E-21 183.9 12.1 181 648-888 15-207 (944)
150 KOG2170 ATPase of the AAA+ sup 99.6 1.1E-15 2.3E-20 156.5 13.3 218 639-869 72-304 (344)
151 PRK12402 replication factor C 99.6 4.7E-15 1E-19 165.4 19.9 204 244-475 4-231 (337)
152 PRK06647 DNA polymerase III su 99.6 6.3E-15 1.4E-19 171.6 21.1 204 243-477 4-227 (563)
153 PRK10365 transcriptional regul 99.6 4E-15 8.7E-20 172.4 19.5 212 651-894 141-356 (441)
154 COG0606 Predicted ATPase with 99.6 7.4E-16 1.6E-20 168.4 12.2 222 648-895 178-437 (490)
155 TIGR02903 spore_lon_C ATP-depe 99.6 3.4E-14 7.4E-19 168.2 26.9 206 647-898 152-392 (615)
156 KOG0738 AAA+-type ATPase [Post 99.6 3.5E-16 7.6E-21 164.4 8.8 196 647-891 210-428 (491)
157 PRK06305 DNA polymerase III su 99.6 1.2E-14 2.6E-19 166.0 21.5 204 243-477 5-229 (451)
158 TIGR02397 dnaX_nterm DNA polym 99.6 1.7E-14 3.6E-19 162.2 21.3 204 243-477 2-225 (355)
159 PRK14953 DNA polymerase III su 99.6 1.5E-14 3.3E-19 166.0 21.2 204 243-477 4-227 (486)
160 PRK14955 DNA polymerase III su 99.6 6.9E-15 1.5E-19 166.4 18.2 205 243-478 4-236 (397)
161 TIGR02903 spore_lon_C ATP-depe 99.6 1.9E-14 4.1E-19 170.3 22.3 212 243-477 142-401 (615)
162 KOG0726 26S proteasome regulat 99.6 4.2E-16 9E-21 157.6 7.0 193 646-891 182-402 (440)
163 TIGR02640 gas_vesic_GvpN gas v 99.6 7.7E-15 1.7E-19 156.7 17.1 169 655-864 4-197 (262)
164 PRK07994 DNA polymerase III su 99.6 2.8E-15 6E-20 174.9 14.4 168 648-868 15-194 (647)
165 PF00004 AAA: ATPase family as 99.6 5.9E-15 1.3E-19 140.6 13.7 121 279-416 1-131 (132)
166 TIGR01242 26Sp45 26S proteasom 99.6 7.2E-16 1.6E-20 173.0 8.3 194 645-891 118-339 (364)
167 TIGR01241 FtsH_fam ATP-depende 99.6 3.4E-15 7.3E-20 174.1 13.9 188 648-891 54-271 (495)
168 KOG0745 Putative ATP-dependent 99.6 9.7E-15 2.1E-19 155.5 15.8 197 681-891 228-487 (564)
169 PRK14954 DNA polymerase III su 99.6 2.3E-14 4.9E-19 167.8 20.6 204 244-478 5-236 (620)
170 PRK14958 DNA polymerase III su 99.6 4.5E-15 9.7E-20 171.3 14.6 169 648-869 15-195 (509)
171 PRK00080 ruvB Holliday junctio 99.6 1.2E-14 2.7E-19 160.7 17.3 166 648-869 24-197 (328)
172 PRK00440 rfc replication facto 99.6 2E-14 4.4E-19 159.0 19.1 202 243-476 5-209 (319)
173 PRK14970 DNA polymerase III su 99.6 4.5E-14 9.7E-19 159.1 22.1 204 243-477 5-216 (367)
174 TIGR00635 ruvB Holliday juncti 99.6 1.3E-14 2.8E-19 159.4 17.1 165 648-868 3-175 (305)
175 PRK14948 DNA polymerase III su 99.6 3.5E-14 7.7E-19 167.2 21.6 202 243-475 4-227 (620)
176 PRK14960 DNA polymerase III su 99.6 6.1E-15 1.3E-19 169.2 14.5 170 648-869 14-194 (702)
177 PRK10733 hflB ATP-dependent me 99.6 1.5E-14 3.2E-19 172.7 18.2 177 275-479 184-373 (644)
178 TIGR00763 lon ATP-dependent pr 99.6 1.2E-14 2.6E-19 177.6 17.7 180 256-456 321-536 (775)
179 PRK14952 DNA polymerase III su 99.6 7.5E-15 1.6E-19 170.6 14.6 169 648-869 12-194 (584)
180 TIGR03689 pup_AAA proteasome A 99.6 4.9E-15 1.1E-19 168.7 12.4 165 648-867 181-380 (512)
181 PTZ00361 26 proteosome regulat 99.6 3.9E-15 8.5E-20 167.4 11.5 192 647-891 181-400 (438)
182 PRK14971 DNA polymerase III su 99.6 4.4E-14 9.6E-19 166.5 20.9 204 243-477 5-229 (614)
183 PRK14957 DNA polymerase III su 99.6 4.7E-15 1E-19 170.7 12.1 184 648-889 15-208 (546)
184 KOG0742 AAA+-type ATPase [Post 99.6 1.1E-14 2.4E-19 153.5 13.8 164 254-436 354-533 (630)
185 PRK07940 DNA polymerase III su 99.6 8.5E-15 1.8E-19 163.4 13.7 172 648-863 4-187 (394)
186 KOG0651 26S proteasome regulat 99.6 4.1E-15 8.9E-20 152.3 10.0 182 253-457 130-337 (388)
187 KOG0652 26S proteasome regulat 99.6 6.3E-15 1.4E-19 146.8 11.0 187 648-889 170-386 (424)
188 PLN00020 ribulose bisphosphate 99.6 1.3E-14 2.7E-19 154.9 14.0 146 677-868 147-314 (413)
189 KOG0729 26S proteasome regulat 99.6 2.6E-15 5.6E-20 150.0 7.9 187 647-891 175-382 (435)
190 PRK14964 DNA polymerase III su 99.6 5.9E-15 1.3E-19 167.5 11.8 184 648-888 12-204 (491)
191 PRK14961 DNA polymerase III su 99.6 8.1E-15 1.8E-19 164.0 12.6 171 648-869 15-195 (363)
192 PRK14951 DNA polymerase III su 99.6 8E-15 1.7E-19 170.9 12.8 171 648-869 15-200 (618)
193 PRK07764 DNA polymerase III su 99.6 1.5E-14 3.3E-19 174.3 15.6 170 648-869 14-196 (824)
194 PLN03025 replication factor C 99.6 2.1E-14 4.6E-19 158.2 15.3 161 648-869 12-175 (319)
195 KOG0739 AAA+-type ATPase [Post 99.6 5.3E-15 1.1E-19 150.2 9.3 184 647-888 131-328 (439)
196 PRK04132 replication factor C 99.6 1.7E-12 3.7E-17 155.4 31.8 136 681-868 566-705 (846)
197 PRK14950 DNA polymerase III su 99.6 2.5E-13 5.4E-18 160.8 24.6 203 243-476 4-227 (585)
198 COG3284 AcoR Transcriptional a 99.6 1.2E-14 2.6E-19 163.9 12.7 207 652-895 316-525 (606)
199 CHL00176 ftsH cell division pr 99.6 1.9E-14 4E-19 169.6 14.5 190 648-890 182-398 (638)
200 PRK07133 DNA polymerase III su 99.6 1.2E-14 2.6E-19 170.3 12.3 171 648-869 17-194 (725)
201 PHA02244 ATPase-like protein 99.6 5.3E-13 1.2E-17 144.1 23.8 204 648-890 95-306 (383)
202 PRK14959 DNA polymerase III su 99.6 2.6E-14 5.7E-19 165.3 14.2 182 648-889 15-208 (624)
203 TIGR02640 gas_vesic_GvpN gas v 99.6 1E-13 2.2E-18 148.0 17.6 163 264-457 11-215 (262)
204 KOG0732 AAA+-type ATPase conta 99.6 4.2E-14 9.2E-19 168.0 16.0 201 253-475 263-486 (1080)
205 PRK14965 DNA polymerase III su 99.6 1.1E-14 2.3E-19 171.4 10.9 170 648-869 15-195 (576)
206 KOG0742 AAA+-type ATPase [Post 99.6 5.8E-12 1.3E-16 133.3 30.0 169 648-870 354-533 (630)
207 PRK14962 DNA polymerase III su 99.5 3.2E-14 6.9E-19 162.6 14.0 182 648-889 13-206 (472)
208 COG2812 DnaX DNA polymerase II 99.5 7.6E-15 1.7E-19 165.7 8.8 171 648-869 15-195 (515)
209 TIGR00368 Mg chelatase-related 99.5 5.4E-14 1.2E-18 161.3 15.6 223 648-895 191-451 (499)
210 PRK08691 DNA polymerase III su 99.5 1.4E-14 3.1E-19 167.9 10.5 183 648-889 15-208 (709)
211 PRK06645 DNA polymerase III su 99.5 3.2E-14 7E-19 163.0 13.2 170 648-869 20-204 (507)
212 PRK05342 clpX ATP-dependent pr 99.5 2.3E-13 4.9E-18 152.7 19.3 187 257-454 73-357 (412)
213 PRK05563 DNA polymerase III su 99.5 6.9E-14 1.5E-18 163.8 15.8 171 647-869 14-195 (559)
214 COG0466 Lon ATP-dependent Lon 99.5 1.4E-13 3E-18 156.1 17.5 178 256-454 324-537 (782)
215 PRK14969 DNA polymerase III su 99.5 1.7E-14 3.6E-19 167.8 10.4 185 648-890 15-209 (527)
216 PRK08451 DNA polymerase III su 99.5 4.5E-14 9.8E-19 161.7 13.6 172 648-869 13-193 (535)
217 PRK08084 DNA replication initi 99.5 1.6E-13 3.4E-18 144.1 16.7 177 253-456 20-201 (235)
218 PRK05896 DNA polymerase III su 99.5 3.1E-14 6.8E-19 163.7 11.6 170 648-869 15-195 (605)
219 PF07728 AAA_5: AAA domain (dy 99.5 4.4E-14 9.6E-19 136.1 10.9 131 681-843 1-139 (139)
220 TIGR00390 hslU ATP-dependent p 99.5 1.9E-13 4.1E-18 149.6 16.9 188 257-456 14-380 (441)
221 PRK09111 DNA polymerase III su 99.5 4.1E-14 8.9E-19 165.5 12.6 172 648-869 23-208 (598)
222 PRK05201 hslU ATP-dependent pr 99.5 1.6E-13 3.4E-18 150.2 16.0 188 257-456 17-382 (443)
223 PRK14963 DNA polymerase III su 99.5 5.6E-14 1.2E-18 161.9 13.2 171 648-869 13-192 (504)
224 PRK06305 DNA polymerase III su 99.5 5E-14 1.1E-18 160.9 12.7 170 648-869 16-197 (451)
225 PHA02544 44 clamp loader, smal 99.5 1.6E-13 3.4E-18 151.7 16.1 177 648-893 20-201 (316)
226 PRK13531 regulatory ATPase Rav 99.5 1.3E-13 2.7E-18 154.1 14.8 181 637-864 8-193 (498)
227 PRK14953 DNA polymerase III su 99.5 4E-14 8.7E-19 162.5 11.3 183 648-889 15-208 (486)
228 KOG2004 Mitochondrial ATP-depe 99.5 1.9E-13 4.2E-18 153.7 16.1 178 256-454 412-625 (906)
229 PRK13342 recombination factor 99.5 1.5E-13 3.2E-18 156.7 15.6 167 648-889 11-184 (413)
230 TIGR01650 PD_CobS cobaltochela 99.5 1.7E-13 3.7E-18 146.8 14.7 157 681-864 66-232 (327)
231 COG0714 MoxR-like ATPases [Gen 99.5 1.8E-13 3.9E-18 151.5 15.3 174 640-860 15-197 (329)
232 PRK07940 DNA polymerase III su 99.5 2.9E-13 6.2E-18 151.3 16.8 175 253-457 3-206 (394)
233 KOG0737 AAA+-type ATPase [Post 99.5 4.4E-14 9.5E-19 149.2 9.3 191 648-891 91-307 (386)
234 PRK10787 DNA-binding ATP-depen 99.5 8E-13 1.7E-17 159.8 21.2 184 256-461 323-542 (784)
235 PTZ00112 origin recognition co 99.5 1.1E-12 2.4E-17 152.2 20.5 211 254-477 754-988 (1164)
236 PRK13341 recombination factor 99.5 2.8E-13 6E-18 161.7 16.2 176 649-891 28-207 (725)
237 CHL00206 ycf2 Ycf2; Provisiona 99.5 1.1E-13 2.4E-18 171.1 12.5 173 681-892 1632-1854(2281)
238 KOG2035 Replication factor C, 99.5 3.2E-12 6.9E-17 129.4 20.7 206 245-475 3-233 (351)
239 PRK06893 DNA replication initi 99.5 6.1E-13 1.3E-17 139.2 15.9 178 251-456 12-195 (229)
240 PRK14955 DNA polymerase III su 99.5 1.1E-13 2.4E-18 156.6 11.0 170 648-869 15-203 (397)
241 COG1220 HslU ATP-dependent pro 99.5 8.3E-14 1.8E-18 144.2 8.9 117 753-896 252-386 (444)
242 COG0465 HflB ATP-dependent Zn 99.5 1.6E-13 3.6E-18 156.6 12.0 189 648-889 149-364 (596)
243 TIGR02928 orc1/cdc6 family rep 99.5 4.2E-12 9.1E-17 143.3 23.4 212 254-478 14-254 (365)
244 KOG0744 AAA+-type ATPase [Post 99.5 1.8E-13 3.9E-18 141.0 10.9 148 279-434 180-343 (423)
245 PF06068 TIP49: TIP49 C-termin 99.5 5.4E-13 1.2E-17 142.2 14.8 100 753-890 280-379 (398)
246 PRK14954 DNA polymerase III su 99.5 2.2E-13 4.7E-18 159.6 12.9 170 648-869 15-203 (620)
247 PRK06647 DNA polymerase III su 99.5 2.7E-13 5.8E-18 158.1 13.0 169 648-868 15-194 (563)
248 CHL00081 chlI Mg-protoporyphyr 99.5 2.5E-13 5.4E-18 148.1 11.8 180 647-865 15-232 (350)
249 TIGR00382 clpX endopeptidase C 99.5 1.7E-12 3.7E-17 144.7 18.7 187 257-454 79-363 (413)
250 KOG2028 ATPase related to the 99.5 1.6E-13 3.4E-18 143.1 9.7 136 681-870 164-299 (554)
251 PRK12402 replication factor C 99.5 7.8E-13 1.7E-17 147.6 15.9 182 648-889 14-214 (337)
252 PRK04195 replication factor C 99.5 6.7E-13 1.5E-17 154.3 15.6 172 649-889 14-190 (482)
253 PRK07399 DNA polymerase III su 99.5 3.8E-13 8.2E-18 146.4 12.4 167 647-865 2-195 (314)
254 KOG0990 Replication factor C, 99.4 1.3E-12 2.8E-17 135.2 15.3 210 237-478 23-240 (360)
255 COG1224 TIP49 DNA helicase TIP 99.4 1.8E-12 3.9E-17 135.5 15.9 99 753-889 293-391 (450)
256 PF14532 Sigma54_activ_2: Sigm 99.4 1.9E-13 4.2E-18 131.3 8.3 137 652-852 1-138 (138)
257 PRK14948 DNA polymerase III su 99.4 5.5E-13 1.2E-17 157.2 13.8 172 648-869 15-197 (620)
258 PRK09112 DNA polymerase III su 99.4 4.9E-12 1.1E-16 139.6 20.2 201 249-474 17-244 (351)
259 PRK05642 DNA replication initi 99.4 2.2E-12 4.7E-17 135.3 16.5 176 253-456 17-200 (234)
260 PF00004 AAA: ATPase family as 99.4 5.7E-13 1.2E-17 126.9 11.1 118 682-850 1-131 (132)
261 PRK14971 DNA polymerase III su 99.4 5.5E-13 1.2E-17 157.3 13.0 170 648-869 16-197 (614)
262 PF05673 DUF815: Protein of un 99.4 6.7E-12 1.5E-16 127.8 18.5 192 252-474 24-245 (249)
263 PRK10733 hflB ATP-dependent me 99.4 7.6E-13 1.6E-17 158.0 13.6 187 649-891 152-368 (644)
264 TIGR02397 dnaX_nterm DNA polym 99.4 1.3E-12 2.8E-17 146.9 14.8 170 647-869 12-193 (355)
265 COG3829 RocR Transcriptional r 99.4 6.7E-13 1.5E-17 147.3 11.9 181 251-452 241-458 (560)
266 PF07726 AAA_3: ATPase family 99.4 4.7E-13 1E-17 122.4 8.5 106 681-801 1-112 (131)
267 PRK13407 bchI magnesium chelat 99.4 1.8E-12 3.9E-17 141.3 14.5 222 251-490 4-300 (334)
268 PRK13407 bchI magnesium chelat 99.4 1.1E-12 2.3E-17 143.1 12.6 180 648-865 7-216 (334)
269 PF13177 DNA_pol3_delta2: DNA 99.4 5.5E-13 1.2E-17 131.4 9.0 151 653-853 1-162 (162)
270 PRK14950 DNA polymerase III su 99.4 1.5E-12 3.3E-17 154.1 14.4 171 647-869 14-196 (585)
271 COG1224 TIP49 DNA helicase TIP 99.4 8.1E-12 1.7E-16 130.7 17.1 95 349-455 292-394 (450)
272 PRK08903 DnaA regulatory inact 99.4 1.4E-11 3E-16 129.2 19.3 183 251-473 14-202 (227)
273 PRK09862 putative ATP-dependen 99.4 5.3E-12 1.2E-16 144.1 17.2 184 648-855 190-391 (506)
274 PRK05564 DNA polymerase III su 99.4 2.4E-12 5.3E-17 141.5 14.0 159 648-865 3-165 (313)
275 PRK00411 cdc6 cell division co 99.4 2.5E-11 5.3E-16 138.5 22.6 209 254-478 29-262 (394)
276 PRK07471 DNA polymerase III su 99.4 1.2E-11 2.7E-16 137.1 19.3 197 249-472 13-240 (365)
277 TIGR02442 Cob-chelat-sub cobal 99.4 2.2E-12 4.8E-17 154.0 14.4 173 647-864 2-213 (633)
278 PRK09112 DNA polymerase III su 99.4 2.1E-12 4.5E-17 142.5 13.1 166 648-863 22-211 (351)
279 PRK08727 hypothetical protein; 99.4 9.1E-12 2E-16 130.6 17.2 176 253-456 17-196 (233)
280 PRK00149 dnaA chromosomal repl 99.4 2E-11 4.4E-16 140.9 21.6 186 253-456 120-314 (450)
281 PRK07471 DNA polymerase III su 99.4 9.9E-13 2.2E-17 145.8 10.2 168 648-865 18-213 (365)
282 PRK14970 DNA polymerase III su 99.4 4.4E-12 9.5E-17 143.0 15.4 156 648-869 16-184 (367)
283 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.7E-11 3.6E-16 128.6 18.6 189 252-475 12-206 (226)
284 TIGR01650 PD_CobS cobaltochela 99.4 3.9E-12 8.4E-17 136.4 13.6 148 262-431 52-233 (327)
285 KOG0744 AAA+-type ATPase [Post 99.4 1.6E-12 3.4E-17 134.1 9.9 177 647-870 140-345 (423)
286 COG4650 RtcR Sigma54-dependent 99.4 1.9E-12 4.1E-17 131.4 9.9 209 647-887 182-397 (531)
287 TIGR00602 rad24 checkpoint pro 99.4 9.5E-12 2.1E-16 145.6 17.0 215 243-477 72-330 (637)
288 TIGR00362 DnaA chromosomal rep 99.4 4E-11 8.6E-16 136.8 21.7 186 253-456 108-302 (405)
289 TIGR02030 BchI-ChlI magnesium 99.4 3.6E-12 7.9E-17 139.3 12.4 180 647-864 2-218 (337)
290 COG3604 FhlA Transcriptional r 99.4 3.8E-12 8.3E-17 139.2 12.2 183 253-453 221-436 (550)
291 PRK00440 rfc replication facto 99.4 1.3E-11 2.7E-16 136.7 16.4 169 648-889 16-191 (319)
292 PRK08058 DNA polymerase III su 99.4 2.7E-12 5.9E-17 141.5 10.9 166 648-863 4-180 (329)
293 PF06068 TIP49: TIP49 C-termin 99.3 2.1E-11 4.5E-16 130.3 16.7 95 349-455 279-381 (398)
294 PRK06620 hypothetical protein; 99.3 1.2E-11 2.6E-16 127.6 14.3 134 277-456 45-181 (214)
295 PF00308 Bac_DnaA: Bacterial d 99.3 1.3E-11 2.9E-16 127.8 14.4 187 252-456 5-200 (219)
296 smart00350 MCM minichromosome 99.3 1.9E-11 4.2E-16 142.6 17.3 199 640-867 194-402 (509)
297 TIGR00678 holB DNA polymerase 99.3 1.5E-11 3.3E-16 124.9 14.5 142 681-864 16-167 (188)
298 CHL00081 chlI Mg-protoporyphyr 99.3 1.9E-11 4.1E-16 133.4 15.7 228 244-493 5-319 (350)
299 PRK12422 chromosomal replicati 99.3 5.5E-11 1.2E-15 135.5 19.6 199 252-475 108-318 (445)
300 smart00763 AAA_PrkA PrkA AAA d 99.3 3.7E-11 8E-16 130.2 16.8 210 650-890 52-348 (361)
301 COG1474 CDC6 Cdc6-related prot 99.3 1E-10 2.2E-15 129.7 20.7 210 255-481 17-248 (366)
302 COG1219 ClpX ATP-dependent pro 99.3 4.2E-11 9E-16 123.6 16.1 170 275-455 96-347 (408)
303 PRK14088 dnaA chromosomal repl 99.3 3.1E-11 6.6E-16 138.0 16.0 187 253-456 103-297 (440)
304 PRK06871 DNA polymerase III su 99.3 1.6E-11 3.4E-16 133.3 12.9 162 651-863 4-177 (325)
305 TIGR02974 phageshock_pspF psp 99.3 8E-11 1.7E-15 129.5 18.5 178 257-454 1-214 (329)
306 PRK05564 DNA polymerase III su 99.3 6.7E-11 1.5E-15 130.1 17.9 175 253-456 2-182 (313)
307 KOG2035 Replication factor C, 99.3 2.9E-11 6.3E-16 122.5 13.6 148 681-870 36-204 (351)
308 COG2204 AtoC Response regulato 99.3 3.4E-11 7.3E-16 134.5 15.4 182 252-453 138-354 (464)
309 PRK09087 hypothetical protein; 99.3 4.5E-11 9.7E-16 124.3 15.4 164 253-456 19-187 (226)
310 PRK14086 dnaA chromosomal repl 99.3 8.9E-11 1.9E-15 135.5 19.3 162 277-456 315-480 (617)
311 PRK11331 5-methylcytosine-spec 99.3 4.6E-11 9.9E-16 132.8 16.2 164 649-851 175-357 (459)
312 COG1221 PspF Transcriptional r 99.3 1.7E-11 3.7E-16 134.5 12.6 204 251-479 74-310 (403)
313 KOG0743 AAA+-type ATPase [Post 99.3 2.2E-11 4.7E-16 132.7 13.1 128 682-867 238-385 (457)
314 KOG0732 AAA+-type ATPase conta 99.3 1.2E-11 2.5E-16 147.5 11.9 193 648-891 264-485 (1080)
315 KOG0743 AAA+-type ATPase [Post 99.3 2.3E-11 5E-16 132.5 13.2 134 273-432 232-384 (457)
316 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.6E-11 5.7E-16 127.1 13.4 149 681-893 40-192 (226)
317 PRK08769 DNA polymerase III su 99.3 1.1E-11 2.4E-16 134.3 10.7 163 650-863 5-183 (319)
318 PTZ00111 DNA replication licen 99.3 3.9E-11 8.5E-16 142.8 16.2 198 640-866 441-658 (915)
319 PRK14087 dnaA chromosomal repl 99.3 2.4E-10 5.1E-15 130.8 21.8 189 252-456 112-311 (450)
320 KOG0991 Replication factor C, 99.3 7.7E-12 1.7E-16 123.3 8.0 163 648-872 26-192 (333)
321 KOG0651 26S proteasome regulat 99.3 9.5E-12 2.1E-16 127.9 8.8 154 648-854 131-305 (388)
322 PRK07399 DNA polymerase III su 99.3 1.1E-10 2.4E-15 127.1 17.7 194 253-472 2-223 (314)
323 TIGR02031 BchD-ChlD magnesium 99.3 3E-11 6.5E-16 142.6 14.3 155 679-866 16-175 (589)
324 COG1239 ChlI Mg-chelatase subu 99.3 4.8E-11 1E-15 129.4 14.5 181 645-866 13-233 (423)
325 TIGR00678 holB DNA polymerase 99.3 1.1E-10 2.3E-15 118.7 16.5 159 268-457 5-184 (188)
326 TIGR02030 BchI-ChlI magnesium 99.3 8E-11 1.7E-15 128.8 16.5 225 254-492 3-305 (337)
327 PF07724 AAA_2: AAA domain (Cd 99.3 1.1E-11 2.4E-16 122.8 8.9 112 274-395 1-131 (171)
328 PRK13531 regulatory ATPase Rav 99.3 4.4E-10 9.6E-15 126.0 22.4 213 257-490 22-278 (498)
329 PRK04132 replication factor C 99.3 6.8E-11 1.5E-15 141.8 17.0 164 277-476 565-737 (846)
330 PRK11608 pspF phage shock prot 99.3 1.8E-10 3.9E-15 126.9 19.0 181 253-453 4-220 (326)
331 PRK08903 DnaA regulatory inact 99.3 8.2E-11 1.8E-15 123.4 15.6 145 681-893 44-190 (227)
332 COG0470 HolB ATPase involved i 99.2 3.7E-11 8E-16 133.3 12.6 143 650-853 2-169 (325)
333 PF01078 Mg_chelatase: Magnesi 99.2 4.4E-12 9.5E-17 126.8 4.5 136 253-398 1-163 (206)
334 PRK06964 DNA polymerase III su 99.2 3.4E-11 7.4E-16 131.6 11.9 141 681-863 23-202 (342)
335 PRK06090 DNA polymerase III su 99.2 4.4E-11 9.4E-16 129.5 12.5 161 651-863 5-178 (319)
336 TIGR01817 nifA Nif-specific re 99.2 1.2E-10 2.5E-15 137.7 17.3 184 250-453 191-408 (534)
337 PRK07993 DNA polymerase III su 99.2 3E-11 6.5E-16 132.6 11.4 162 651-863 4-178 (334)
338 PRK05707 DNA polymerase III su 99.2 2.3E-11 4.9E-16 133.2 10.4 141 681-864 24-177 (328)
339 PTZ00112 origin recognition co 99.2 1E-10 2.2E-15 136.2 15.9 196 646-888 752-965 (1164)
340 KOG1969 DNA replication checkp 99.2 4.9E-11 1.1E-15 135.2 12.6 187 241-460 257-506 (877)
341 KOG0740 AAA+-type ATPase [Post 99.2 3.8E-11 8.2E-16 132.0 11.2 174 644-868 148-336 (428)
342 TIGR00764 lon_rel lon-related 99.2 9.6E-11 2.1E-15 138.5 15.1 116 744-889 210-341 (608)
343 KOG0745 Putative ATP-dependent 99.2 2.2E-10 4.8E-15 122.7 16.2 170 275-455 225-488 (564)
344 PF00158 Sigma54_activat: Sigm 99.2 7.6E-11 1.6E-15 116.5 12.0 138 257-414 1-166 (168)
345 PHA02244 ATPase-like protein 99.2 9.8E-11 2.1E-15 126.8 13.7 142 257-421 98-264 (383)
346 PRK06893 DNA replication initi 99.2 1.2E-10 2.5E-15 122.0 14.0 145 681-887 41-189 (229)
347 TIGR02329 propionate_PrpR prop 99.2 1.4E-10 3E-15 134.4 15.9 179 252-449 209-419 (526)
348 COG0714 MoxR-like ATPases [Gen 99.2 6.3E-11 1.4E-15 131.2 12.5 153 256-428 25-200 (329)
349 PRK13765 ATP-dependent proteas 99.2 1.1E-10 2.4E-15 137.2 14.4 118 744-890 219-351 (637)
350 COG0470 HolB ATPase involved i 99.2 3.3E-10 7.1E-15 125.7 17.3 152 256-424 2-174 (325)
351 TIGR02442 Cob-chelat-sub cobal 99.2 1.9E-10 4.1E-15 137.5 16.2 162 254-429 3-212 (633)
352 COG2607 Predicted ATPase (AAA+ 99.2 7.9E-10 1.7E-14 110.3 17.6 193 254-477 59-280 (287)
353 PRK15424 propionate catabolism 99.2 2.3E-10 5.1E-15 132.4 15.9 184 252-447 216-432 (538)
354 cd00009 AAA The AAA+ (ATPases 99.2 1.8E-10 3.9E-15 111.3 12.2 150 653-851 2-151 (151)
355 PRK08058 DNA polymerase III su 99.2 2.5E-10 5.4E-15 126.0 14.5 155 254-428 4-179 (329)
356 PF07728 AAA_5: AAA domain (dy 99.2 3.3E-11 7.1E-16 116.1 6.5 111 278-410 1-139 (139)
357 TIGR02928 orc1/cdc6 family rep 99.2 3.6E-10 7.8E-15 127.6 15.7 184 646-866 12-213 (365)
358 KOG1942 DNA helicase, TBP-inte 99.2 3.4E-10 7.3E-15 115.3 13.6 87 753-869 298-384 (456)
359 PRK05022 anaerobic nitric oxid 99.2 5.6E-10 1.2E-14 130.7 17.7 182 253-454 185-401 (509)
360 COG1220 HslU ATP-dependent pro 99.2 5.9E-10 1.3E-14 116.0 15.6 106 349-455 251-382 (444)
361 PRK08084 DNA replication initi 99.2 4.4E-10 9.5E-15 118.1 14.9 145 681-887 47-195 (235)
362 PF05673 DUF815: Protein of un 99.2 1.6E-09 3.5E-14 110.6 17.9 183 648-872 26-214 (249)
363 PRK11388 DNA-binding transcrip 99.1 3.5E-10 7.6E-15 136.7 15.5 180 252-454 322-535 (638)
364 PRK11331 5-methylcytosine-spec 99.1 3.2E-10 7E-15 126.1 13.7 152 254-418 174-358 (459)
365 PRK08727 hypothetical protein; 99.1 5.8E-10 1.3E-14 117.0 15.0 146 681-889 43-192 (233)
366 KOG1942 DNA helicase, TBP-inte 99.1 4.7E-10 1E-14 114.3 13.3 95 349-455 297-400 (456)
367 PRK00411 cdc6 cell division co 99.1 7.6E-10 1.6E-14 126.3 16.8 178 647-866 28-221 (394)
368 cd00009 AAA The AAA+ (ATPases 99.1 4.4E-10 9.6E-15 108.5 12.8 145 258-416 1-150 (151)
369 PRK15429 formate hydrogenlyase 99.1 1.5E-09 3.3E-14 131.9 20.2 182 252-453 373-589 (686)
370 PRK10820 DNA-binding transcrip 99.1 9.6E-10 2.1E-14 128.7 17.5 182 251-452 200-416 (520)
371 PF13177 DNA_pol3_delta2: DNA 99.1 1.3E-09 2.8E-14 107.5 15.6 143 259-419 1-162 (162)
372 PRK05707 DNA polymerase III su 99.1 2.1E-09 4.6E-14 117.7 18.5 176 263-472 11-205 (328)
373 COG1474 CDC6 Cdc6-related prot 99.1 8.4E-10 1.8E-14 122.4 14.4 180 648-868 16-206 (366)
374 PRK08769 DNA polymerase III su 99.1 4.9E-09 1.1E-13 113.8 19.9 182 261-471 10-209 (319)
375 PRK05642 DNA replication initi 99.1 1.3E-09 2.9E-14 114.3 14.5 146 681-889 47-196 (234)
376 PRK05917 DNA polymerase III su 99.1 6.5E-10 1.4E-14 118.0 12.0 145 656-853 4-155 (290)
377 PF07726 AAA_3: ATPase family 99.1 1.5E-11 3.3E-16 112.6 -0.5 108 278-411 1-130 (131)
378 PF05621 TniB: Bacterial TniB 99.1 6.7E-09 1.5E-13 109.5 18.9 195 274-478 59-269 (302)
379 COG0593 DnaA ATPase involved i 99.1 1.5E-09 3.2E-14 119.8 14.6 163 276-456 113-278 (408)
380 TIGR00764 lon_rel lon-related 99.1 2.6E-09 5.7E-14 126.4 17.1 120 348-478 217-371 (608)
381 TIGR00362 DnaA chromosomal rep 99.0 1.7E-09 3.6E-14 123.5 14.4 154 681-888 138-297 (405)
382 COG1239 ChlI Mg-chelatase subu 99.0 3.5E-09 7.5E-14 115.1 15.8 208 253-481 15-286 (423)
383 PF00308 Bac_DnaA: Bacterial d 99.0 1.4E-09 3E-14 112.8 11.8 155 681-889 36-196 (219)
384 COG0606 Predicted ATPase with 99.0 6E-10 1.3E-14 122.6 9.4 147 252-422 176-383 (490)
385 KOG0741 AAA+-type ATPase [Post 99.0 2.3E-10 5E-15 125.1 6.0 138 681-869 258-418 (744)
386 PRK08699 DNA polymerase III su 99.0 8E-10 1.7E-14 120.9 9.9 141 681-863 23-183 (325)
387 PRK07993 DNA polymerase III su 99.0 1.4E-08 3.1E-13 111.6 19.2 179 261-472 8-206 (334)
388 TIGR03015 pepcterm_ATPase puta 99.0 4.5E-08 9.7E-13 105.5 22.7 182 274-477 41-245 (269)
389 PRK12422 chromosomal replicati 99.0 3E-09 6.5E-14 121.4 14.1 152 681-886 143-298 (445)
390 PF01637 Arch_ATPase: Archaeal 99.0 1.2E-09 2.7E-14 114.6 10.2 198 257-457 1-227 (234)
391 smart00350 MCM minichromosome 99.0 4.4E-09 9.5E-14 122.9 15.7 202 255-479 203-454 (509)
392 PRK06871 DNA polymerase III su 99.0 1.9E-08 4.1E-13 109.4 19.4 149 262-429 9-177 (325)
393 PRK07276 DNA polymerase III su 99.0 1.9E-09 4.1E-14 114.9 11.4 157 653-862 6-172 (290)
394 TIGR00368 Mg chelatase-related 99.0 2.6E-09 5.7E-14 123.0 13.1 155 252-422 189-395 (499)
395 PRK00149 dnaA chromosomal repl 99.0 2.9E-09 6.3E-14 123.1 13.0 154 681-888 150-309 (450)
396 PTZ00111 DNA replication licen 99.0 8.6E-09 1.9E-13 123.2 16.2 164 254-433 449-659 (915)
397 KOG2680 DNA helicase TIP49, TB 99.0 4.8E-09 1E-13 107.4 12.0 97 753-887 290-386 (454)
398 KOG0990 Replication factor C, 99.0 8.4E-10 1.8E-14 114.7 6.5 157 649-869 41-207 (360)
399 PRK06964 DNA polymerase III su 99.0 1.6E-08 3.5E-13 110.8 16.8 152 263-428 9-201 (342)
400 PRK14086 dnaA chromosomal repl 98.9 4.7E-09 1E-13 121.5 12.9 142 681-869 316-463 (617)
401 smart00763 AAA_PrkA PrkA AAA d 98.9 9.8E-09 2.1E-13 111.6 14.6 96 349-453 237-348 (361)
402 PF12775 AAA_7: P-loop contain 98.9 2.2E-09 4.7E-14 114.7 8.8 150 266-435 24-197 (272)
403 KOG1051 Chaperone HSP104 and r 98.9 4E-09 8.6E-14 125.7 11.7 121 257-395 564-712 (898)
404 PF00493 MCM: MCM2/3/5 family 98.9 9.2E-10 2E-14 121.4 5.9 204 640-869 15-225 (331)
405 KOG1808 AAA ATPase containing 98.9 7.9E-09 1.7E-13 130.3 14.6 146 261-428 422-596 (1856)
406 PRK12377 putative replication 98.9 4E-09 8.6E-14 110.6 9.9 106 681-806 103-210 (248)
407 TIGR02031 BchD-ChlD magnesium 98.9 1.2E-08 2.7E-13 120.6 15.3 197 274-492 14-254 (589)
408 PRK14087 dnaA chromosomal repl 98.9 1.4E-08 2.9E-13 116.5 14.8 158 681-889 143-307 (450)
409 KOG0480 DNA replication licens 98.9 6.9E-09 1.5E-13 116.3 11.7 225 638-892 334-571 (764)
410 PRK06090 DNA polymerase III su 98.9 3.6E-08 7.8E-13 107.0 16.7 149 262-428 10-177 (319)
411 PRK05818 DNA polymerase III su 98.9 5.7E-09 1.2E-13 108.3 9.7 127 681-852 9-147 (261)
412 TIGR02915 PEP_resp_reg putativ 98.9 5E-08 1.1E-12 113.2 18.5 182 253-454 137-353 (445)
413 PF14532 Sigma54_activ_2: Sigm 98.9 1.7E-09 3.7E-14 103.9 4.5 130 258-419 1-137 (138)
414 PRK08116 hypothetical protein; 98.9 1.2E-08 2.6E-13 109.0 11.3 108 681-806 116-225 (268)
415 PRK10923 glnG nitrogen regulat 98.9 5.3E-08 1.1E-12 113.8 17.8 182 253-454 136-352 (469)
416 PRK14088 dnaA chromosomal repl 98.9 1.7E-08 3.6E-13 115.6 13.0 156 681-889 132-293 (440)
417 PRK07132 DNA polymerase III su 98.9 3.3E-08 7.2E-13 106.5 14.4 143 656-863 3-160 (299)
418 PRK13406 bchD magnesium chelat 98.8 1.1E-08 2.5E-13 119.6 11.6 177 679-890 25-207 (584)
419 TIGR00602 rad24 checkpoint pro 98.8 2.7E-08 5.8E-13 116.9 13.9 52 648-703 83-134 (637)
420 PRK13765 ATP-dependent proteas 98.8 2.3E-08 5E-13 117.9 12.7 122 347-479 225-381 (637)
421 PF02861 Clp_N: Clp amino term 98.8 7.8E-09 1.7E-13 81.4 5.9 52 94-145 1-52 (53)
422 KOG1969 DNA replication checkp 98.8 3.9E-08 8.4E-13 112.2 13.4 158 681-891 328-500 (877)
423 PRK09087 hypothetical protein; 98.8 8.1E-08 1.7E-12 100.0 15.0 135 681-888 46-182 (226)
424 PF12775 AAA_7: P-loop contain 98.8 3.8E-08 8.3E-13 105.2 12.7 156 681-869 35-197 (272)
425 PRK06620 hypothetical protein; 98.8 4.5E-08 9.7E-13 101.1 12.7 129 681-889 46-177 (214)
426 smart00382 AAA ATPases associa 98.8 3.6E-08 7.7E-13 94.2 10.6 130 276-417 2-146 (148)
427 PRK08699 DNA polymerase III su 98.8 1.4E-07 3E-12 103.5 15.9 153 262-428 8-182 (325)
428 PRK08181 transposase; Validate 98.8 5.3E-08 1.1E-12 103.4 12.2 106 681-808 108-215 (269)
429 PRK09862 putative ATP-dependen 98.8 1.4E-08 3E-13 116.4 7.9 150 253-422 189-392 (506)
430 KOG2680 DNA helicase TIP49, TB 98.8 8.3E-08 1.8E-12 98.5 12.6 94 349-454 289-390 (454)
431 PRK11361 acetoacetate metaboli 98.7 1.2E-07 2.6E-12 110.5 15.8 182 253-454 141-357 (457)
432 PF13173 AAA_14: AAA domain 98.7 4.6E-08 9.9E-13 92.7 9.8 124 277-423 3-127 (128)
433 KOG0478 DNA replication licens 98.7 3E-08 6.5E-13 112.2 9.5 186 640-855 420-616 (804)
434 PRK15115 response regulator Gl 98.7 1.3E-07 2.8E-12 109.7 15.4 176 256-454 135-348 (444)
435 TIGR01818 ntrC nitrogen regula 98.7 4.2E-07 9.1E-12 106.1 19.3 179 255-453 134-347 (463)
436 COG2607 Predicted ATPase (AAA+ 98.7 5.2E-07 1.1E-11 90.5 16.7 182 649-872 60-246 (287)
437 smart00382 AAA ATPases associa 98.7 8E-08 1.7E-12 91.8 10.9 118 681-801 4-125 (148)
438 PRK15455 PrkA family serine pr 98.7 1.5E-07 3.3E-12 106.9 14.4 192 647-867 74-348 (644)
439 TIGR03015 pepcterm_ATPase puta 98.7 2.9E-07 6.2E-12 99.3 16.0 174 681-889 45-226 (269)
440 COG1241 MCM2 Predicted ATPase 98.7 5.4E-08 1.2E-12 113.8 10.1 201 642-868 279-486 (682)
441 PRK08116 hypothetical protein; 98.7 1.8E-07 3.9E-12 100.0 13.3 131 277-420 115-251 (268)
442 PRK06526 transposase; Provisio 98.7 4.9E-08 1.1E-12 103.2 8.8 105 681-808 100-207 (254)
443 PF01695 IstB_IS21: IstB-like 98.7 2.4E-08 5.2E-13 99.9 6.0 106 681-808 49-156 (178)
444 PF06309 Torsin: Torsin; Inte 98.6 5.2E-08 1.1E-12 89.3 6.8 67 639-707 15-81 (127)
445 PRK07952 DNA replication prote 98.6 8.5E-08 1.8E-12 100.4 9.1 107 681-806 101-209 (244)
446 PRK06835 DNA replication prote 98.6 7.6E-08 1.6E-12 105.3 8.9 107 681-806 185-293 (329)
447 PRK12377 putative replication 98.6 9E-08 1.9E-12 100.4 8.3 115 275-410 100-222 (248)
448 COG1484 DnaC DNA replication p 98.6 1.5E-07 3.3E-12 99.5 10.0 107 681-808 107-215 (254)
449 COG3283 TyrR Transcriptional r 98.6 8.2E-07 1.8E-11 93.6 14.6 176 253-450 202-409 (511)
450 PRK05917 DNA polymerase III su 98.6 1.3E-06 2.8E-11 93.1 15.2 138 263-418 5-154 (290)
451 PF03215 Rad17: Rad17 cell cyc 98.6 8.1E-07 1.8E-11 102.8 14.7 214 243-476 7-269 (519)
452 PRK10365 transcriptional regul 98.5 2.2E-06 4.7E-11 99.5 18.5 175 256-454 140-353 (441)
453 PRK06581 DNA polymerase III su 98.5 9.1E-07 2E-11 89.9 11.7 135 681-866 17-162 (263)
454 PF13173 AAA_14: AAA domain 98.5 7.4E-07 1.6E-11 84.4 10.5 121 681-857 4-127 (128)
455 PRK07952 DNA replication prote 98.5 5.7E-07 1.2E-11 94.2 10.5 114 277-410 100-221 (244)
456 PRK09183 transposase/IS protei 98.5 2.8E-07 6E-12 98.1 8.3 105 681-808 104-212 (259)
457 COG0593 DnaA ATPase involved i 98.5 1.5E-06 3.2E-11 96.3 14.1 141 681-869 115-261 (408)
458 COG3284 AcoR Transcriptional a 98.5 3.1E-07 6.7E-12 104.7 8.7 172 258-452 316-519 (606)
459 PRK08181 transposase; Validate 98.4 5.5E-07 1.2E-11 95.7 9.1 121 275-410 105-230 (269)
460 PRK07132 DNA polymerase III su 98.4 9.9E-06 2.1E-10 87.5 18.7 146 263-428 4-159 (299)
461 PF13401 AAA_22: AAA domain; P 98.4 1.2E-06 2.6E-11 83.1 10.2 109 275-393 3-125 (131)
462 PRK13406 bchD magnesium chelat 98.4 3.6E-06 7.8E-11 98.9 15.9 190 275-492 24-246 (584)
463 PF05729 NACHT: NACHT domain 98.4 2.9E-06 6.4E-11 83.8 13.0 145 279-431 3-163 (166)
464 PF12774 AAA_6: Hydrolytic ATP 98.4 2.2E-06 4.7E-11 89.1 12.3 131 682-860 35-175 (231)
465 KOG2227 Pre-initiation complex 98.4 1E-05 2.2E-10 88.9 17.7 187 252-453 147-357 (529)
466 KOG3595 Dyneins, heavy chain [ 98.4 2.6E-05 5.5E-10 101.3 23.8 140 277-433 128-288 (1395)
467 PF12774 AAA_6: Hydrolytic ATP 98.4 1.4E-06 3E-11 90.6 10.0 131 265-426 23-175 (231)
468 KOG0481 DNA replication licens 98.4 1.5E-06 3.2E-11 95.4 10.4 188 643-857 325-519 (729)
469 COG1484 DnaC DNA replication p 98.4 1E-06 2.2E-11 93.3 9.0 103 275-394 104-209 (254)
470 PF13401 AAA_22: AAA domain; P 98.4 7.2E-07 1.6E-11 84.6 6.9 108 681-801 6-125 (131)
471 PF03215 Rad17: Rad17 cell cyc 98.4 1.1E-05 2.3E-10 93.6 17.7 213 651-897 21-260 (519)
472 COG5245 DYN1 Dynein, heavy cha 98.4 7.3E-05 1.6E-09 91.0 24.3 162 273-453 1491-1682(3164)
473 KOG2227 Pre-initiation complex 98.4 1.9E-06 4.1E-11 94.4 10.5 183 648-870 149-343 (529)
474 PRK06921 hypothetical protein; 98.3 6.3E-07 1.4E-11 95.6 6.5 104 681-807 119-230 (266)
475 PRK07276 DNA polymerase III su 98.3 9.1E-06 2E-10 87.0 15.1 145 260-427 7-171 (290)
476 PRK06835 DNA replication prote 98.3 1.9E-06 4.2E-11 94.3 10.2 118 276-410 183-305 (329)
477 PHA00729 NTP-binding motif con 98.3 2.3E-06 4.9E-11 87.6 9.7 127 265-429 6-138 (226)
478 PRK08939 primosomal protein Dn 98.3 1.7E-06 3.7E-11 94.0 9.4 107 681-808 158-267 (306)
479 KOG1970 Checkpoint RAD17-RFC c 98.3 1.1E-05 2.3E-10 90.2 15.1 200 243-457 70-308 (634)
480 KOG0477 DNA replication licens 98.3 1.4E-06 2.9E-11 97.8 7.7 140 647-801 447-598 (854)
481 PRK05818 DNA polymerase III su 98.3 8.2E-06 1.8E-10 85.1 13.1 125 275-419 6-148 (261)
482 PF13191 AAA_16: AAA ATPase do 98.3 1E-06 2.2E-11 89.0 6.0 47 256-302 1-50 (185)
483 PRK06526 transposase; Provisio 98.3 1.3E-06 2.8E-11 92.5 6.6 123 275-420 97-236 (254)
484 PF01695 IstB_IS21: IstB-like 98.2 1.2E-06 2.6E-11 87.7 5.2 101 275-395 46-151 (178)
485 PF05729 NACHT: NACHT domain 98.2 4.8E-06 1E-10 82.3 9.4 146 681-867 2-165 (166)
486 PRK06921 hypothetical protein; 98.2 4E-06 8.6E-11 89.5 9.1 122 275-410 116-240 (266)
487 COG1618 Predicted nucleotide k 98.2 2.9E-05 6.3E-10 73.6 13.4 143 276-434 5-175 (179)
488 PRK15455 PrkA family serine pr 98.2 1.3E-05 2.7E-10 91.6 13.0 52 251-302 72-129 (644)
489 PF01637 Arch_ATPase: Archaeal 98.2 3E-06 6.6E-11 88.8 7.5 174 652-868 2-207 (234)
490 COG4650 RtcR Sigma54-dependent 98.2 3.8E-06 8.2E-11 86.1 7.3 152 257-427 186-368 (531)
491 TIGR02688 conserved hypothetic 98.2 2.3E-05 5E-10 86.6 13.9 98 681-802 211-313 (449)
492 PF00910 RNA_helicase: RNA hel 98.2 3.1E-06 6.7E-11 77.3 6.0 94 682-801 1-107 (107)
493 KOG0482 DNA replication licens 98.2 2.3E-06 5.1E-11 93.8 5.9 187 640-855 333-529 (721)
494 PF08298 AAA_PrkA: PrkA AAA do 98.2 1.7E-05 3.7E-10 85.7 12.3 208 649-889 61-344 (358)
495 KOG1514 Origin recognition com 98.2 3E-05 6.4E-10 89.2 14.8 170 255-434 396-592 (767)
496 PRK08939 primosomal protein Dn 98.1 3.7E-06 8E-11 91.5 7.3 101 275-394 155-261 (306)
497 KOG2228 Origin recognition com 98.1 2.5E-05 5.4E-10 82.4 12.8 165 255-431 24-219 (408)
498 PF00931 NB-ARC: NB-ARC domain 98.1 2.3E-05 4.9E-10 85.3 12.3 173 260-456 1-194 (287)
499 KOG0478 DNA replication licens 98.1 3.7E-05 8E-10 87.8 13.7 161 257-435 431-630 (804)
500 COG1241 MCM2 Predicted ATPase 98.1 2.4E-05 5.3E-10 92.0 12.4 174 244-433 275-485 (682)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-122 Score=1060.07 Aligned_cols=726 Identities=58% Similarity=0.931 Sum_probs=662.5
Q ss_pred hccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCCcCC
Q 002623 82 DFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLG 161 (899)
Q Consensus 82 ~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s 161 (899)
+||++++.+|..|+.+|++++|+++++||||++|+.++++. .++..+|++++.++..+...+.+.|...+. +.+|
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~s 75 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGIDLDKLRQELEEFIDKLPKVLGS---PYLS 75 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHHcCCCHHHHHHHHHHHHhccCCCCCC---CCCC
Confidence 58999999999999999999999999999999999998887 999999999999999999999999877662 7889
Q ss_pred hhHHHHHHHHHHHHHHcCCCccCHHHHHHHhhccC-chhhhHHHhcCCChhhHHHHHHHHhccccccCCCCCcchHHHHh
Q 002623 162 RDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEK 240 (899)
Q Consensus 162 ~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~-~~~~~ll~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~ 240 (899)
+.++++++.|+.+|+.++++||+++|+|++++.++ +.+..+|...+++...+.+.+..+.++.......++.....|.+
T Consensus 76 ~~~~~~~~~a~~~a~~~~~~~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 155 (786)
T COG0542 76 PRLKRVLERAWLLAQSLGDEYVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQDALEK 155 (786)
T ss_pred HHHHHHHHHHHHHHHhccCccccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHHHHhcccccCCcccccchhhHHH
Confidence 99999999999999999999999999999999887 78889999999999999888888887655555555666689999
Q ss_pred hcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 241 YGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
|+.+|++.++.+++||+|||+++|++++++|+|+.++|++|+|+||||||++|++||+++..|+||+.|++..++++|++
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCc-hHHHHHHHhhhhcCCCeEEEEecChhHHHhh
Q 002623 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG-AMDAGNLLKPMLGRGELRCIGATTLDEYRKY 399 (899)
Q Consensus 321 ~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~-~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~ 399 (899)
++++|++|+|+||++++.+++++...+ ++||||||||++++++...| ++|+.|+|+++|.+|.++||||||..+|++|
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 999999999999999999999999876 99999999999999998876 6999999999999999999999999999999
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhh
Q 002623 400 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (899)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~ 479 (899)
++.|+||.|||++|.+.+|+.++...||+++.++|+.+|+|.|+|+++.+++.+|.|||++|++||||+|++|+||++++
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~ 394 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 480 MEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRV 559 (899)
Q Consensus 480 ~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~ 559 (899)
+... .|..++.+++++.+++.|+..+.++.+ .+++..+.....+++
T Consensus 395 l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~----------------------------~~~k~~~~~~~~~~~----- 440 (786)
T COG0542 395 LEID-KPEELDELERELAQLEIEKEALEREQD----------------------------EKEKKLIDEIIKLKE----- 440 (786)
T ss_pred hccc-CCcchhHHHHHHHHHHHHHHHHhhhhh----------------------------HHHHHHHHHHHHHhh-----
Confidence 9988 999999999999999999988765543 111111111111110
Q ss_pred hHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHH
Q 002623 560 NLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREK 639 (899)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~ 639 (899)
+....++.++.. .|++++|++++++|+|+|+.++...+...
T Consensus 441 ---------------------~~~~~~~~~~~~------------------~v~~~~Ia~vv~~~TgIPv~~l~~~e~~k 481 (786)
T COG0542 441 ---------------------GRIPELEKELEA------------------EVDEDDIAEVVARWTGIPVAKLLEDEKEK 481 (786)
T ss_pred ---------------------hhhhhHHHHHhh------------------ccCHHHHHHHHHHHHCCChhhhchhhHHH
Confidence 001111111111 18999999999999999999999999999
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
+.++++.+.++|+||++|+..+..+|++.++|+.+|++|+|++||.||+|||||.+|++||..+|++...++++|||+|+
T Consensus 482 ll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~ 561 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYM 561 (786)
T ss_pred HHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEec
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTS 799 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 799 (899)
++|++++++|+|||||||+++|.|++++++.||+||+||||+|+||+++|.|||+||+|+++|+.|++++|+|++|||||
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCC--C
Q 002623 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSP--W 877 (899)
Q Consensus 800 N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~--~ 877 (899)
|.|+..+.....+ .....++.+.+.++..++..|+|+|++|+|.+|+|.||+.+++.+|++.++.++...+.... .
T Consensus 642 N~Gs~~i~~~~~~--~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l 719 (786)
T COG0542 642 NAGSEEILRDADG--DDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITL 719 (786)
T ss_pred ccchHHHHhhccc--cccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 9999988764211 22234677888899999999999999999999999999999999999999999998887543 5
Q ss_pred ccCHHHHHHhh
Q 002623 878 HFNYEMLVKFC 888 (899)
Q Consensus 878 ~~~~~~l~~~~ 888 (899)
.+++++...+.
T Consensus 720 ~~s~~a~~~l~ 730 (786)
T COG0542 720 ELSDEAKDFLA 730 (786)
T ss_pred EECHHHHHHHH
Confidence 67777754443
No 2
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.2e-103 Score=961.72 Aligned_cols=803 Identities=61% Similarity=0.966 Sum_probs=728.6
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCCcCCh
Q 002623 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGR 162 (899)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 162 (899)
||+.++++|..|+.+|++++|++|+|||||+||+.++++.+.++|+++|+|++.++..+...+++.|...+....++||+
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd~~~l~~~l~~~l~~~~~~~~~~~~~~~S~ 80 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVNVGALRQALEKELEKLPKVSGPGGQVYLSP 80 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHhcccccCCCCCCCCCcCH
Confidence 79999999999999999999999999999999999999999999999999999999999999987664332113578999
Q ss_pred hHHHHHHHHHHHHHHcCCCccCHHHHHHHhhccCchhhhHHHhcCCChhhHHHHHHHHhccccccCCCCCcchHHHHhhc
Q 002623 163 DLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEALEKYG 242 (899)
Q Consensus 163 ~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~~~~~~ll~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (899)
.++++|+.|+.+|..+|+.+|+++|||+||+++++.+.++|..+|++.+.+++.+..+.++.......+....+.|.+|+
T Consensus 81 ~~~~vLe~A~~~A~~~g~~~I~teHLLlALl~e~~~a~~iL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (852)
T TIGR03346 81 ELNRLLNLAEKLAQKRGDEFISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINAVRGGQKVTSANAEDQYEALEKYA 160 (852)
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCCccHHHHHHHcCCCHHHHHHHHHhhccCccccccccccchhHHHHHh
Confidence 99999999999999999999999999999998874456899999999999988887654322221112234457999999
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 322 (899)
.+|+++++++.++|+|||++++++++++|+++.++|+||+||||||||++|+++++.+..+.+|..+.+.+++.++++.+
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhcc
Q 002623 323 IAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 402 (899)
Q Consensus 323 ~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~ 402 (899)
.+|.+|.|+++.+++.++..+....+++||||||+|.+.+++...+..++.++|++++++|.+.+||+||.++|++++.+
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~ 320 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEK 320 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhc
Confidence 99999999999999999999876556899999999999987776677889999999999999999999999999999999
Q ss_pred CHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhhc
Q 002623 403 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEI 482 (899)
Q Consensus 403 d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~~ 482 (899)
|+++.+||+.|.+++|+.+++..||+.+..+|+.+|++.++++++.+++.+|.+|+++|++||||++++|+||+++++..
T Consensus 321 d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~ 400 (852)
T TIGR03346 321 DAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEI 400 (852)
T ss_pred CHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002623 483 TSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLE 562 (899)
Q Consensus 483 ~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~~~~ 562 (899)
...|..++.+++.+..++.++..+.++.+.....++.++++++..++.++..+...|..+...+.....+++++..++.+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (852)
T TIGR03346 401 DSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLE 480 (852)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999977766667788899999999999999999999999999999888888888877777
Q ss_pred HHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHh
Q 002623 563 IQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLH 642 (899)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~ 642 (899)
.+...+.+++.++.+++|+.+..+++.+........+.. ...+....|+.++|+.++++|+|+|...+...+...+..
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~ 558 (852)
T TIGR03346 481 LEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEET--KPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLH 558 (852)
T ss_pred HHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhcc--ccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 888888999999999999888888887776665543321 134566789999999999999999999999999999999
Q ss_pred HHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhh
Q 002623 643 LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH 722 (899)
Q Consensus 643 l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~ 722 (899)
+++.+.+.|+||+.+++.+..++...+.|...|++|.+++||+||||||||++|++||+.+++.+.+++++||+++.+.+
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~ 638 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC
Q 002623 723 AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (899)
Q Consensus 723 ~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~ 802 (899)
..+.++|.+++|+||.+++.+++.++..|++|||||||+++++++++.|+++|++|.++|..|+.+++.|++||+|||.|
T Consensus 639 ~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccC--CCccC
Q 002623 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS--PWHFN 880 (899)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~--~~~~~ 880 (899)
...+.....+ ..++.+...+.+.+.+.|+|+|++|||.++.|.||+.+++.+|+...+..+...+... ...++
T Consensus 719 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~ 793 (852)
T TIGR03346 719 SQFIQELAGG-----DDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELS 793 (852)
T ss_pred hHhHhhhccc-----ccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 8876553211 1245667778888899999999999999999999999999999999999877655433 36789
Q ss_pred HHHHHHhhcccc
Q 002623 881 YEMLVKFCYLAF 892 (899)
Q Consensus 881 ~~~l~~~~~~~~ 892 (899)
++++..++...|
T Consensus 794 ~~a~~~L~~~~~ 805 (852)
T TIGR03346 794 DAALDFLAEAGY 805 (852)
T ss_pred HHHHHHHHHhCC
Confidence 999999888877
No 3
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=1.7e-103 Score=954.52 Aligned_cols=807 Identities=52% Similarity=0.853 Sum_probs=728.7
Q ss_pred CChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCC
Q 002623 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (899)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~ 157 (899)
||+++||+.++.+|+.|+.+|++++|.+|++||||++|+.++++.+..+|+++|+|++.++..+...+++.|...+....
T Consensus 1 ~~~~~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (857)
T PRK10865 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGINAGQLRTDINQALSRLPQVEGTGGD 80 (857)
T ss_pred CChHHhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 67999999999999999999999999999999999999999989999999999999999999999999877753322245
Q ss_pred CcCChhHHHHHHHHHHHHHHcCCCccCHHHHHHHhhccCchhhhHHHhcCCChhhHHHHHHHHhccccccCCCCCcchHH
Q 002623 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEA 237 (899)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~~~~~~ll~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 237 (899)
+++|+.++++|+.|+.++..+|+.+|+++|+|++++.+++....+|..++++.+.+.+.+..+.++.......++...+.
T Consensus 81 ~~~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (857)
T PRK10865 81 VQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA 160 (857)
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHHHhhccccccccccccchhH
Confidence 78999999999999999999999999999999999988755556899999999999888866543222111122334578
Q ss_pred HHhhcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE
Q 002623 238 LEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (899)
Q Consensus 238 l~~~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (899)
|.+|+.||++++++++++|+|||++++++++++|+++.++|+||+||||||||++|++||+.+..+.+|..+.+.+++.+
T Consensus 161 l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred HHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHH
Q 002623 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR 397 (899)
Q Consensus 318 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~ 397 (899)
+++.+.+|.+|+|+++.+++.+++++....+++||||||+|.+.+++...+..+++++|++.+++|.+++|||||.++|+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 99999999999999999999999998765678999999999999888777889999999999999999999999999999
Q ss_pred hhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHh
Q 002623 398 KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 398 ~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~ 477 (899)
+++.+|+++.|||+.|.++.|+.+++..|++.+..+|+.+|++.++++++..++.++.||++++++|++|++++|.+++.
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 478 LKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEID 557 (899)
Q Consensus 478 ~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~ 557 (899)
+++.....|..++.+++.+..++.+.+.+..+....+..+++++++++..+++++..+.++|..+...+.......++++
T Consensus 401 ~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele 480 (857)
T PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELE 480 (857)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999877766778889999999999999999999999999998888778888888
Q ss_pred HHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHH
Q 002623 558 RVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSER 637 (899)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~ 637 (899)
.++..++++.+.+++..+.++.|+.+..++.++...+.... ....++...|+.++|+.++++|+|+|+.++...+.
T Consensus 481 ~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~ 556 (857)
T PRK10865 481 QAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEG----KTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESER 556 (857)
T ss_pred HHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhc----cccccccCccCHHHHHHHHHHHHCCCchhhhhhHH
Confidence 88888889999999999888888887777776655433221 22346667899999999999999999999999999
Q ss_pred HHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecccc
Q 002623 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (899)
Q Consensus 638 ~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (899)
.++..+++.+++.|+||+.+++.|..++...+.|..+|++|++++||+||||||||++|++||+.+++.+.++++++|++
T Consensus 557 ~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se 636 (857)
T PRK10865 557 EKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSE 636 (857)
T ss_pred HHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred chhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 718 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
+.+.+..+.++|.+++|+|+..++.+++.++..|++||||||++++++++++.|+++|++|+++|+.|+++++.+++||+
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~ 716 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM 716 (857)
T ss_pred hhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence 99888889999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhccc--C
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY--S 875 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~--~ 875 (899)
|||.++..+.+.. +. ..+..+.+.+...+.+.|+|+|++|||.++.|.||+.+++.+|++.++.++..++.. -
T Consensus 717 TSN~g~~~~~~~~-~~----~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi 791 (857)
T PRK10865 717 TSNLGSDLIQERF-GE----LDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGY 791 (857)
T ss_pred eCCcchHHHHHhc-cc----cchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999987765421 11 124456666777788999999999999999999999999999999999997654422 1
Q ss_pred CCccCHHHHHHhhccccc
Q 002623 876 PWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 876 ~~~~~~~~l~~~~~~~~~ 893 (899)
...++++++..++.+.|.
T Consensus 792 ~l~is~~al~~L~~~gy~ 809 (857)
T PRK10865 792 EIHISDEALKLLSENGYD 809 (857)
T ss_pred cCcCCHHHHHHHHHcCCC
Confidence 357899999888887765
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=4.5e-103 Score=946.93 Aligned_cols=786 Identities=42% Similarity=0.673 Sum_probs=680.6
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCCcCCh
Q 002623 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGSMLGR 162 (899)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 162 (899)
+|+.++++|+.|+.+|++++|++|+|+|||+||+.++++.+..+|+.+|++++.++..+..++.+.|...+ ..+++|+
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd~~~Lr~~le~~l~~~p~~~~--~~~~~S~ 78 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNT--RTPVFSP 78 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCC--CCCCcCH
Confidence 68999999999999999999999999999999999988999999999999999999999999987665332 3578999
Q ss_pred hHHHHHHHHHHH-HHHcCCCccCHHHHHHHhhccCc---hhhhHHHhc-CCChhhHHHHHHHH-hccc-cc----cCC--
Q 002623 163 DLEALIQRSREY-KKEYGDSFVSVEHLVLGFTQDQR---FGKQLFRDF-QISLPTLKSAIEAI-RGRQ-SV----IDQ-- 229 (899)
Q Consensus 163 ~~~~~l~~A~~~-a~~~g~~~I~~ehlllall~~~~---~~~~ll~~~-gv~~~~l~~~i~~~-~~~~-~~----~~~-- 229 (899)
.++++|+.|+.+ +..+|+.+|+++|||+||++++. .+..++..+ +++.+.+.+.+..+ .+.. .. ...
T Consensus 79 ~l~~vL~~A~~~~a~~~g~~~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (852)
T TIGR03345 79 HLVELLQEAWLLASLELGDGRIRSGHLLLALLTDPELRRLLGSISPELAKIDREALREALPALVEGSAEASAAAADAGPA 158 (852)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHHHHHHHhcCCccccccccccccc
Confidence 999999999974 56799999999999999998763 455677777 99999998887654 2111 11 000
Q ss_pred ---CCCcchHHHHhhcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCc
Q 002623 230 ---DPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVP 306 (899)
Q Consensus 230 ---~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p 306 (899)
......+.|.+|+.||++++++++++|+|||++++++++++|+++.++|+||+||||||||++|++||+.+..+.+|
T Consensus 159 ~~~~~~~~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~ 238 (852)
T TIGR03345 159 AAAAGAAGTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238 (852)
T ss_pred cccccccchhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 01123468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeE
Q 002623 307 QALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELR 386 (899)
Q Consensus 307 ~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~ 386 (899)
..+.+.+++.++++.+.+|.+|+|+++.+++.+++++...+.++||||||+|.+.+++...+..++.|+|++.+++|.++
T Consensus 239 ~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~ 318 (852)
T TIGR03345 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR 318 (852)
T ss_pred ccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeE
Confidence 99999999999999999999999999999999999997656789999999999998887667788889999999999999
Q ss_pred EEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 387 CIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 387 ~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
||||||.++|++++++||+|.|||+.|.|++|+.+++.+||+.+...|+.+|++.++++++.+++.+|.||++++++|||
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 467 AIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTD--KASKDRLNRLEAELSLLKERQAQLTEQWEHEKT 544 (899)
Q Consensus 467 a~~lld~a~~~~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~--~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~ 544 (899)
|+|++|+||+++++...+.|..++.+++.+..++.+...+.++.. .....+..++++++..+++++..+...|+.++.
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999889999999999999999999998865532 122346777889999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhcHH---HHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHH
Q 002623 545 VMTRIQSIKEEIDRVNLEIQQAEREYDLN---RAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIV 621 (899)
Q Consensus 545 ~l~~~~~~~e~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~ 621 (899)
........+.+. .++.. ...+..++.+..++ ..+...... ..+....|+.++|++++
T Consensus 479 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~v~~~~i~~vv 538 (852)
T TIGR03345 479 LVEAILALRAEL------------EADADAPADDDAALRAQLAELE-------AALASAQGE-EPLVFPEVDAQAVAEVV 538 (852)
T ss_pred HHHHHHHHHHHh------------hhcccchhhhhHHHHHHHHHHH-------HHHHHHhhc-cccccceecHHHHHHHH
Confidence 554332222211 11111 11222222223333 233222222 24556779999999999
Q ss_pred HHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHH
Q 002623 622 SKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALAS 701 (899)
Q Consensus 622 ~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~ 701 (899)
++|+|+|+.++...+...+..++..|.+.|+||+.+++.+..++...+.|+.+|++|++++||+||||||||++|++||+
T Consensus 539 ~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 539 ADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred HHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeee
Q 002623 702 YMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVT 781 (899)
Q Consensus 702 ~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~ 781 (899)
.+++....++++||++|.+.++++.++|+++||+||.+++.+++.++++|++||+||||+++++++++.|+++|++|+++
T Consensus 619 ~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~ 698 (852)
T TIGR03345 619 LLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVME 698 (852)
T ss_pred HHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceee
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHH
Q 002623 782 DSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIV 861 (899)
Q Consensus 782 ~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~ 861 (899)
|+.|+.+++.|++||+|||.+...|.....+.. .....+.+...+.+.+...|+|+|++||+ +|+|.||+.+++.+|+
T Consensus 699 d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv 776 (852)
T TIGR03345 699 DGEGREIDFKNTVILLTSNAGSDLIMALCADPE-TAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIV 776 (852)
T ss_pred cCCCcEEeccccEEEEeCCCchHHHHHhccCcc-cCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHH
Confidence 999999999999999999999988876432211 11234667788888999999999999996 9999999999999999
Q ss_pred HHHHHHHHhhcccC---CCccCHHHHHHhhcccc
Q 002623 862 RLQVSFSKVSWIYS---PWHFNYEMLVKFCYLAF 892 (899)
Q Consensus 862 ~~~l~~~~~~~~~~---~~~~~~~~l~~~~~~~~ 892 (899)
+..+.++..++... ...++++++..++...+
T Consensus 777 ~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~ 810 (852)
T TIGR03345 777 RLKLDRIARRLKENHGAELVYSEALVEHIVARCT 810 (852)
T ss_pred HHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcC
Confidence 99999987655432 35678888666655444
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=3e-100 Score=929.83 Aligned_cols=747 Identities=48% Similarity=0.779 Sum_probs=656.5
Q ss_pred ChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCCCCCCC
Q 002623 79 TQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAGS 158 (899)
Q Consensus 79 ~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~ 158 (899)
||++||++++++|..|+.+|++++|++|+|||||+||+.++++.+.++|+++|++++.++..+...+++.+.... ..+
T Consensus 1 m~~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid~~~l~~~l~~~l~~~~~~~~--~~~ 78 (821)
T CHL00095 1 MFERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVTLKDARIEVEKIIGRGTGFVA--VEI 78 (821)
T ss_pred ChhhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc--ccc
Confidence 789999999999999999999999999999999999999999999999999999999999999998876543221 357
Q ss_pred cCChhHHHHHHHHHHHHHHcCCCccCHHHHHHHhhccC-chhhhHHHhcCCChhhHHHHHHHHhcccc--ccC-CCCCcc
Q 002623 159 MLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQS--VID-QDPEGK 234 (899)
Q Consensus 159 ~~s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~-~~~~~ll~~~gv~~~~l~~~i~~~~~~~~--~~~-~~~~~~ 234 (899)
+||+.++++++.|+.+|..+++.+|+++|+|+||+.++ +.+.++|..+|++.+.++..+........ ... ......
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l~~~l~~~~e~~~~~~~~~~~ 158 (821)
T CHL00095 79 PFTPRAKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLILNLIGEIIEAILGAEQSRSK 158 (821)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999999999999999999999999999999886 67778999999999999888876432211 100 111223
Q ss_pred hHHHHhhcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeE
Q 002623 235 YEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKL 314 (899)
Q Consensus 235 ~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~ 314 (899)
.+.|++|+.+|+++++.+.++|++|+++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..+.+.++
T Consensus 159 ~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i 238 (821)
T CHL00095 159 TPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLV 238 (821)
T ss_pred chHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChh
Q 002623 315 ISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (899)
Q Consensus 315 ~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~ 394 (899)
+++|++.+.+|.+|+|+++++++.+++++.. .+++||||||+|.+++++...+..++.++|++.+++|.+++||+||.+
T Consensus 239 ~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 239 ITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred EEeeHHHHhccCCCccHHHHHHHHHHHHHHh-cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 9999999999999999999999999999965 468999999999999888777778899999999999999999999999
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHH
Q 002623 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (899)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a 474 (899)
+|+++++.||+|.+||+.|.+++|+.++...|++.+.+.|+.++++.++++++..++.+|.+|+++|++|+||++++|++
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a 397 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEA 397 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 475 AAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKE 554 (899)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e 554 (899)
|+++++.....|..++.+++.+..++.+...+.++.+. +...+++.+...+++++..+...|+.+.
T Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 463 (821)
T CHL00095 398 GSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF---ETAKQLRDREMEVRAQIAAIIQSKKTEE----------- 463 (821)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------
Confidence 99999988888999999999999988888777544321 1122222222233333333333333221
Q ss_pred HHHHHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchh
Q 002623 555 EIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQ 634 (899)
Q Consensus 555 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~ 634 (899)
. .......|+.++|+.+++.|+|+|+.++..
T Consensus 464 -----------------------------------------------~--~~~~~~~v~~~~i~~~~~~~tgip~~~~~~ 494 (821)
T CHL00095 464 -----------------------------------------------E--KRLEVPVVTEEDIAEIVSAWTGIPVNKLTK 494 (821)
T ss_pred -----------------------------------------------c--ccccCCccCHHHHHHHHHHHHCCCchhhch
Confidence 0 011235689999999999999999999999
Q ss_pred hHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEec
Q 002623 635 SEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (899)
Q Consensus 635 ~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (899)
.+...+..++..|.+.|+||+.+++.|..++...+.|+..|++|++++||+||||||||++|++||+.+|+...+++++|
T Consensus 495 ~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d 574 (821)
T CHL00095 495 SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD 574 (821)
T ss_pred hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEE
Q 002623 715 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (899)
Q Consensus 715 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 794 (899)
|++|.+.+.+++++|+++||+|+.+++.+++.++.+|++||+|||||++++++++.|+++||+|+++|+.|+.+++.+++
T Consensus 575 ~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred chhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhhhhccC--CCCC--C---CcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHH
Q 002623 795 IIMTSNVGSQYILNMD--DETF--P---KETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 795 iI~ttN~~~~~~~~~~--~~~~--~---~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
||+|||.|...+.... .++. . ....++.+.+.+.+.+...|+|+|++|||.+|+|.||+.+++.+|++..+.+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999987665321 1111 1 1223567788888889999999999999999999999999999999999999
Q ss_pred HHhhcccC--CCccCHHHHHHhhccc
Q 002623 868 SKVSWIYS--PWHFNYEMLVKFCYLA 891 (899)
Q Consensus 868 ~~~~~~~~--~~~~~~~~l~~~~~~~ 891 (899)
+..++... ...+++++...++...
T Consensus 735 l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 735 LFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 87766444 3577888876665543
No 6
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-96 Score=859.03 Aligned_cols=771 Identities=49% Similarity=0.730 Sum_probs=692.0
Q ss_pred CCCCChhhccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcC-CCHHHHHHHHHHHhhcCCCCCC
Q 002623 75 SGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVG-VDNTRLLEATEKFIQRQPKVLG 153 (899)
Q Consensus 75 ~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~g-v~~~~l~~~~~~~~~~~~~~~~ 153 (899)
+.++++++||++|..||..|+.+|+++||+++||+|++.+||..++++++++|.+.+ ++..++..++...+.++|+..+
T Consensus 4 ~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~~l~~ralelc~~v~l~rlpt~~~ 83 (898)
T KOG1051|consen 4 GVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSHPLQCRALELCFNVSLNRLPTSYG 83 (898)
T ss_pred cccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcCcccHHHHHHHHHHHHHhccCCCC
Confidence 456788999999999999999999999999999999999999999999999999999 9999999999999999998876
Q ss_pred CCCCCcCChhHHHHHHHHHHHH----HHcCCCccCHHHHHHH-hhccCchhhhHHHhcCCChhhHHHHHHHHhccccccC
Q 002623 154 ETAGSMLGRDLEALIQRSREYK----KEYGDSFVSVEHLVLG-FTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVID 228 (899)
Q Consensus 154 ~~~~~~~s~~~~~~l~~A~~~a----~~~g~~~I~~ehllla-ll~~~~~~~~ll~~~gv~~~~l~~~i~~~~~~~~~~~ 228 (899)
|+.+..+..++.++++++ ..+++.||..||+.+. .+.|+..+.++++++|++...++..|....+...+..
T Consensus 84 ----p~~sn~l~aalkr~qa~qrr~~~~~~~~~vkvE~~~li~silDdp~vsrv~reag~~s~~vK~~ve~~~g~~~~~~ 159 (898)
T KOG1051|consen 84 ----PPVSNALMAALKRAQAHQRRGCEEQQQQAVKVELEQLILSILDDPSVSRVMREAGFSSSAVKSAVEQPVGQFRSPS 159 (898)
T ss_pred ----CccchHhHHHHHHHHHHHHhcchhhccchhhHhHHhhheeeecCchHHHHHHHhcCChHHHHHHHHhhccccCCCC
Confidence 455555555555555555 4578889999998443 3344444559999999999999999999886555555
Q ss_pred CCCCcchHHHHhhcccHHHHHhcCCCCCCcCc-hHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcc
Q 002623 229 QDPEGKYEALEKYGKDLTAMASAGKLDPVIGR-DDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ 307 (899)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~-~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~ 307 (899)
..+......|.+|+.++++.++.+.++|++|+ ++++++++++|+++.++|++|+|+||+|||.+++.+++++..|++|.
T Consensus 160 ~~~~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~ 239 (898)
T KOG1051|consen 160 RGPLWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPE 239 (898)
T ss_pred cCCccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCc
Confidence 45555678999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEE
Q 002623 308 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRC 387 (899)
Q Consensus 308 ~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~ 387 (899)
.+.+..++.+++..+.+|.+++|+++.+++.+..++...++++||||||+|++++.+...+.+++.|+|++.+.+|.+||
T Consensus 240 ~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~ 319 (898)
T KOG1051|consen 240 TLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWC 319 (898)
T ss_pred cccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEE
Confidence 99999999999999999999999999999999999987678899999999999999888778999999999999999999
Q ss_pred EEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhH
Q 002623 388 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (899)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a 467 (899)
|||||..+|+++++.+|+|.+||+.+.++.|+.++...||+.+.++|+.+|++.+++.++..++.++.+|++.+++|+++
T Consensus 320 IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~a 399 (898)
T KOG1051|consen 320 IGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCA 399 (898)
T ss_pred EecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 468 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 547 (899)
Q Consensus 468 ~~lld~a~~~~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~ 547 (899)
++++|+||+.++......|.++..+++....++.++..++++++..++.++. .+++...+.....+...|..+++.++
T Consensus 400 idl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~ 477 (898)
T KOG1051|consen 400 IDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIE 477 (898)
T ss_pred ccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccc--cccccccccccccchhhhccchhHHh
Confidence 9999999999999999999999999999999999999999888877887777 66777778888889999999999998
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcC
Q 002623 548 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 627 (899)
Q Consensus 548 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~ 627 (899)
..+.....++.... ++++++.+++..+.++.|+.++ +...+ .... ...+..++..++..|+|+
T Consensus 478 ~l~~~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-----~~~~~------~~~~-----~~~~~~~i~~~~s~~tgi 540 (898)
T KOG1051|consen 478 ELKLKKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-----DELSE------KSND-----NQGGESDISEVVSRWTGI 540 (898)
T ss_pred hhccccCCcccchh-hhcccCCCCcchhhhccccccc-----hhhhh------hccc-----ccCCccchhhhhhhhcCC
Confidence 88777777777666 8899999999999999998887 11111 1111 111788999999999999
Q ss_pred CcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC
Q 002623 628 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 707 (899)
Q Consensus 628 ~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~ 707 (899)
|+......+..++..+++.|.++|+||++++.+|..+|..++.|..+| +|.+|++|.||+|+|||.+|++||..+|++.
T Consensus 541 p~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse 619 (898)
T KOG1051|consen 541 PVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSE 619 (898)
T ss_pred chhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999999999999999988 8888999999999999999999999999999
Q ss_pred CceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCce
Q 002623 708 EALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 708 ~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~ 787 (899)
..|+++||++|.+ +++++|.++||+|+++++.|++.+++.|++||+|||||++|+++++.|+++||+|+++|+.|+.
T Consensus 620 ~~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~ 696 (898)
T KOG1051|consen 620 ENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGRE 696 (898)
T ss_pred cceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcE
Confidence 9999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCEEEEEecCCChhhhhccCC------CCCCCcchHHHHHHHHHHHHH----hcCChHHHhccceEEecCCCCHHHH
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDD------ETFPKETAYETIKQRVMDAAR----SIFRPEFMNRVDEYIVFQPLDRDQI 857 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~p~ll~R~d~~i~f~~l~~e~i 857 (899)
++++|+|||||+|.+.+.+..... ........+......+.+.++ ..|+|+|++|+|.++.|.+++.+++
T Consensus 697 Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~ 776 (898)
T KOG1051|consen 697 VDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDEL 776 (898)
T ss_pred eeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhH
Confidence 999999999999999887655321 111112334445666777778 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 002623 858 SSIVRLQVSFSKVSW 872 (899)
Q Consensus 858 ~~I~~~~l~~~~~~~ 872 (899)
.+|+...+.....++
T Consensus 777 ~~i~~~~~~e~~~r~ 791 (898)
T KOG1051|consen 777 IEIVNKQLTEIEKRL 791 (898)
T ss_pred hhhhhhHHHHHHHHh
Confidence 999999887775443
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.4e-93 Score=862.40 Aligned_cols=677 Identities=44% Similarity=0.716 Sum_probs=601.8
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHhh-cCCCCCCC-CCCCcC
Q 002623 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQ-RQPKVLGE-TAGSML 160 (899)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~ 160 (899)
||++++++|..|+++|++++|++|++||||+|||++++ +.++|+++|+|++.++..+...++ +.|...+. ...+++
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~~gid~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 78 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEECGGDVEALRKDLEDYLENNLPSITEENEADPEQ 78 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCCc
Confidence 68999999999999999999999999999999999765 669999999999999999999887 44533221 135789
Q ss_pred ChhHHHHHHHHHHHHHHcCCCccCHHHHHHHhhccC-chhhhHHHhcCCChhhHHHHHHH-Hhc-c-c-cccCC----CC
Q 002623 161 GRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEA-IRG-R-Q-SVIDQ----DP 231 (899)
Q Consensus 161 s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~-~~~~~ll~~~gv~~~~l~~~i~~-~~~-~-~-~~~~~----~~ 231 (899)
|+.++++|+.|+.+|..+|+++|+++|||+||++++ +.+.++|...|++.+.+...+.. ... . . ..... ..
T Consensus 79 S~~lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 158 (731)
T TIGR02639 79 TVGVQRVLQRALLHVKSAGKKEIGIGDILVALFDEEDSHASYFLKSQGITRLDILEYISHGIPKDDGKNRDAEEAGKEEA 158 (731)
T ss_pred CHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHHHHhhccccccccccccccccccc
Confidence 999999999999999999999999999999999886 67778999999999999887753 111 1 0 00000 01
Q ss_pred CcchHHHHhhcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCC
Q 002623 232 EGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN 311 (899)
Q Consensus 232 ~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~ 311 (899)
....+.|.+|+.||++++++++++|++||++++++++++|+++.++|+||+||||||||++|+++|+.+..+++|..+.+
T Consensus 159 ~~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 159 KKQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred ccchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 12346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC-chHHHHHHHhhhhcCCCeEEEEe
Q 002623 312 RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-GAMDAGNLLKPMLGRGELRCIGA 390 (899)
Q Consensus 312 ~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~-~~~~~~~~L~~~l~~~~v~~I~a 390 (899)
++++.+|++.+.+|.+|.|+++.+++++++++... .++||||||+|.+++++... +..+++++|++.+++|.+.+||+
T Consensus 239 ~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~Iga 317 (731)
T TIGR02639 239 AKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGS 317 (731)
T ss_pred CeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999999999999999999999999998754 58899999999999877543 45788999999999999999999
Q ss_pred cChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHH
Q 002623 391 TTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDL 470 (899)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~l 470 (899)
||..+|++++++|++|.|||+.|.|++|+.+++.+||+.+...|+.+|++.++++++.+++.+|.+|+.++++|+||+++
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~l 397 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDV 397 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 471 VDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQ 550 (899)
Q Consensus 471 ld~a~~~~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~ 550 (899)
+|++|+++++.....
T Consensus 398 ld~a~a~~~~~~~~~----------------------------------------------------------------- 412 (731)
T TIGR02639 398 IDEAGASFRLRPKAK----------------------------------------------------------------- 412 (731)
T ss_pred HHHhhhhhhcCcccc-----------------------------------------------------------------
Confidence 999998776521100
Q ss_pred HHHHHHHHHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcc
Q 002623 551 SIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVS 630 (899)
Q Consensus 551 ~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~ 630 (899)
....|+.+++..+++.|+|+|+.
T Consensus 413 ---------------------------------------------------------~~~~v~~~~i~~~i~~~tgiP~~ 435 (731)
T TIGR02639 413 ---------------------------------------------------------KKANVSVKDIENVVAKMAHIPVK 435 (731)
T ss_pred ---------------------------------------------------------cccccCHHHHHHHHHHHhCCChh
Confidence 01247889999999999999999
Q ss_pred cchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCce
Q 002623 631 KLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710 (899)
Q Consensus 631 ~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~ 710 (899)
.+...+...+..++..+.+.|+||+.+++.+..++...+.|...|++|.+++||+||||||||++|++||+.+ +.++
T Consensus 436 ~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~ 512 (731)
T TIGR02639 436 TVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHL 512 (731)
T ss_pred hhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCe
Confidence 9988999999999999999999999999999999999999999999999999999999999999999999999 6789
Q ss_pred EEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeee
Q 002623 711 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSF 790 (899)
Q Consensus 711 ~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~ 790 (899)
+++||++|.+.+.++.++|+++||+|+.+++.+++.++..|++||||||||++++++++.|+++||+|.++|..|+.+++
T Consensus 513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHh
Q 002623 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV 870 (899)
Q Consensus 791 ~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~ 870 (899)
.+++||+|||.|...+.....+.. .....+.+...+...|.|+|++|||.+|+|.||+.+++.+|+++.++++..
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~-----~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~ 667 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFG-----SENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSK 667 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcc-----hhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999876644211111 123344667778899999999999999999999999999999999998877
Q ss_pred hcccC--CCccCHHHHHHhhcccc
Q 002623 871 SWIYS--PWHFNYEMLVKFCYLAF 892 (899)
Q Consensus 871 ~~~~~--~~~~~~~~l~~~~~~~~ 892 (899)
.+... ...++++++..++...+
T Consensus 668 ~l~~~~~~l~i~~~a~~~La~~~~ 691 (731)
T TIGR02639 668 QLNEKNIKLELTDDAKKYLAEKGY 691 (731)
T ss_pred HHHhCCCeEEeCHHHHHHHHHhCC
Confidence 66544 35778888777766543
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-91 Score=824.95 Aligned_cols=678 Identities=40% Similarity=0.662 Sum_probs=596.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCCCC--CCCCc
Q 002623 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQR-QPKVLGE--TAGSM 159 (899)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~~~-~~~~~~~--~~~~~ 159 (899)
+|+.+..+|..|..+|++++|.+|++||||++|+.+++ +..+|+.+|++.+.++..+..+++. .|...+. ...++
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHHcCCCHHHHHHHHHHHHhhcCCcCCCCCCcCCcC
Confidence 78999999999999999999999999999999998654 8899999999999999999998863 3322211 12367
Q ss_pred CChhHHHHHHHHHHHHHHcCCCccCHHHHHHHhhccC-chhhhHHHhcCCChhhHHHHHHHHhcc-ccc--c---CC---
Q 002623 160 LGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGR-QSV--I---DQ--- 229 (899)
Q Consensus 160 ~s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~-~~~~~ll~~~gv~~~~l~~~i~~~~~~-~~~--~---~~--- 229 (899)
++..++++++.|+.+|..+++.+|+++|||+||++++ +.+.++|..++++...+...+...... ... . ..
T Consensus 80 ~~~~~~~~l~~a~~~~~~~~~~~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T PRK11034 80 PTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDPGSQPNS 159 (758)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHHHHHhCCccccccccccccccccc
Confidence 8999999999999999999999999999999999886 777789999999988876665431110 000 0 00
Q ss_pred -CCCcchHHHHhhcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccc
Q 002623 230 -DPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA 308 (899)
Q Consensus 230 -~~~~~~~~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~ 308 (899)
......+.|.+|+.+|++.++.+++++++|+++++++++++|+++.++|+||+||||||||++|+++++.+..+++|..
T Consensus 160 ~~~~~~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~ 239 (758)
T PRK11034 160 EEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_pred cccccchhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCch
Confidence 0012236899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCC-CchHHHHHHHhhhhcCCCeEE
Q 002623 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT-NGAMDAGNLLKPMLGRGELRC 387 (899)
Q Consensus 309 l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~-~~~~~~~~~L~~~l~~~~v~~ 387 (899)
+.++.++.++++.+..|.+|+|+++.+++.++..+.. .+++||||||+|.+.+.+.. .+..++.++|++++++|++.+
T Consensus 240 l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~-~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~v 318 (758)
T PRK11034 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_pred hcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHh-cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEE
Confidence 9999999999999999999999999999999998875 35789999999999988763 456889999999999999999
Q ss_pred EEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhH
Q 002623 388 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (899)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a 467 (899)
||+||.++|++++..|++|.|||+.|.|++|+.+++..||+.+..+|+.+|++.++++++..++.++.+|++++++|+||
T Consensus 319 IgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred EecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 468 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 547 (899)
Q Consensus 468 ~~lld~a~~~~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~ 547 (899)
++++|+||+++++....
T Consensus 399 idlldea~a~~~~~~~~--------------------------------------------------------------- 415 (758)
T PRK11034 399 IDVIDEAGARARLMPVS--------------------------------------------------------------- 415 (758)
T ss_pred HHHHHHHHHhhccCccc---------------------------------------------------------------
Confidence 99999999987642000
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcC
Q 002623 548 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 627 (899)
Q Consensus 548 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~ 627 (899)
.-...|+.+++.+++++|+|+
T Consensus 416 -----------------------------------------------------------~~~~~v~~~~i~~v~~~~tgi 436 (758)
T PRK11034 416 -----------------------------------------------------------KRKKTVNVADIESVVARIARI 436 (758)
T ss_pred -----------------------------------------------------------ccccccChhhHHHHHHHHhCC
Confidence 000136778999999999999
Q ss_pred CcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC
Q 002623 628 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 707 (899)
Q Consensus 628 ~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~ 707 (899)
|...+...+...+..+++.|...|+||+++++.|..++...+.|+..+++|++++||+||||||||++|+++|+.+ +
T Consensus 437 p~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~ 513 (758)
T PRK11034 437 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G 513 (758)
T ss_pred ChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCce
Q 002623 708 EALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 708 ~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~ 787 (899)
.+++++||+++.+.+.++.++|.++||+|+..++.+++.++..|++||||||||++++++++.|+++||+|.++|..|++
T Consensus 514 ~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 514 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCce
Confidence 89999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHH
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
+++.+++||+|||.|.+.+.....|+... .....+.+.++..|+|+|++|||.+|.|+||+.+++.+|++.++.+
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~-----~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQ-----DNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccc-----hhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999877654422222111 1123345667889999999999999999999999999999999998
Q ss_pred HHhhcccC--CCccCHHHHHHhhccccc
Q 002623 868 SKVSWIYS--PWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 868 ~~~~~~~~--~~~~~~~~l~~~~~~~~~ 893 (899)
+...+... ...++++++..++...+.
T Consensus 669 ~~~~l~~~~i~l~~~~~~~~~l~~~~~~ 696 (758)
T PRK11034 669 LQAQLDQKGVSLEVSQEARDWLAEKGYD 696 (758)
T ss_pred HHHHHHHCCCCceECHHHHHHHHHhCCC
Confidence 88777443 467888888888765543
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-45 Score=397.31 Aligned_cols=477 Identities=22% Similarity=0.322 Sum_probs=323.7
Q ss_pred CCCCCcCchHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 253 KLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
.|.++=|.+..+..+.+.+ .-.+++++||+||||||||.||+++|.++ +.+|++++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 4777888888776666543 33567899999999999999999999999 9999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhhc--------CCCeEEEE
Q 002623 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG--------RGELRCIG 389 (899)
Q Consensus 321 ~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~--------~~~v~~I~ 389 (899)
++++| +.|+.|++++++|++++.. .|||+||||||.+.+.+... ....+..-|...|+ ...|.+||
T Consensus 258 eivSG--vSGESEkkiRelF~~A~~~-aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 258 EIVSG--VSGESEKKIRELFDQAKSN-APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred hhhcc--cCcccHHHHHHHHHHHhcc-CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 99977 6799999999999999864 69999999999999888654 22334444555553 13799999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
|||.++ .+||+|+| ||+ .|.+..|+..++.+||+.+++.+.... +-....+++++.+|... .
T Consensus 335 ATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-----~~d~~qlA~lTPGfVGA-----D 399 (802)
T KOG0733|consen 335 ATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-----DFDFKQLAKLTPGFVGA-----D 399 (802)
T ss_pred cCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-----CcCHHHHHhcCCCccch-----h
Confidence 999998 79999999 998 899999999999999999998744222 22356778999887544 6
Q ss_pred HHHHHHHHHHhhhhh--ccCC-chhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 467 AIDLVDEAAAKLKME--ITSK-PTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEK 543 (899)
Q Consensus 467 a~~lld~a~~~~~~~--~~~~-~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~ 543 (899)
...|+.+|+..+--+ .... |.... - ..+.. .+ ... +.+.
T Consensus 400 L~AL~~~Aa~vAikR~ld~~~~p~~~~--------------~-~~ed~-~~-~~~---------------------~~d~ 441 (802)
T KOG0733|consen 400 LMALCREAAFVAIKRILDQSSSPLTKV--------------P-ISEDS-SN-KDA---------------------EEDQ 441 (802)
T ss_pred HHHHHHHHHHHHHHHHhhcccCccccC--------------C-ccccc-cC-CCc---------------------cchh
Confidence 667777766443211 0000 00000 0 00000 00 000 0000
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhc--CcccccccCChhhHHHHH
Q 002623 544 TVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISS--GKSMLREEVTGSDIAEIV 621 (899)
Q Consensus 544 ~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~v~~~~i~~~~ 621 (899)
+.+.. + ..+++..++.+ .+ .+.|..-... ...+..-.+..+|+.+.+
T Consensus 442 S~i~~-----~---------~~~~~~~~ld~--------------v~---~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al 490 (802)
T KOG0733|consen 442 SSIKI-----T---------SNAERPLELDR--------------VV---QDAILNNPDPLSKELLEGLSIKFEDFEEAL 490 (802)
T ss_pred hhhhc-----C---------CcccccccHHH--------------HH---HHHHHhCCCCcChHHhccceecHHHHHHHH
Confidence 00000 0 00000000000 00 0000000000 000111235566666666
Q ss_pred HHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHH--------HHcCCCCCCCCcceeEEeccCCCcHH
Q 002623 622 SKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKT 693 (899)
Q Consensus 622 ~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT 693 (899)
..+ .|.. .++-+..+.+.-|++|.+++++..+|..+|.. .+.|...|. .+||+||||||||
T Consensus 491 ~~i--QPSa-----kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~Ps----GvLL~GPPGCGKT 559 (802)
T KOG0733|consen 491 SKI--QPSA-----KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPS----GVLLCGPPGCGKT 559 (802)
T ss_pred Hhc--Ccch-----hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCC----ceEEeCCCCccHH
Confidence 543 1211 12334555666789999999999999988842 245666544 3999999999999
Q ss_pred HHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCccccc--ccchhHHHhhCCCeEEEEeCCCccCh------
Q 002623 694 ELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRRRPYAVILFDEIEKAHS------ 765 (899)
Q Consensus 694 ~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~l~~------ 765 (899)
.+|+++|+.. +.+|+.+...++.++ |+|..+ .++++...+.+.+|||||||+|.+-|
T Consensus 560 LlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 560 LLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred HHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 9999999998 899999999998655 455433 35777778888899999999999764
Q ss_pred -----HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH
Q 002623 766 -----DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 840 (899)
Q Consensus 766 -----~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll 840 (899)
.+.|.||..||... ...++.+|++||. ...++|+++
T Consensus 625 s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNR------------------------------PDiIDpAiL 665 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNR------------------------------PDIIDPAIL 665 (802)
T ss_pred chhHHHHHHHHHHHhcccc---------cccceEEEeecCC------------------------------Ccccchhhc
Confidence 38999999998642 2357899999999 677888888
Q ss_pred --hccceEEecCCCCHHHHHHHHHHHHHHHHh---------hcccCC--CccCHHHHHHhhccc
Q 002623 841 --NRVDEYIVFQPLDRDQISSIVRLQVSFSKV---------SWIYSP--WHFNYEMLVKFCYLA 891 (899)
Q Consensus 841 --~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~---------~~~~~~--~~~~~~~l~~~~~~~ 891 (899)
+|||.++.+.+++.+|...|++...+.... ++.... .+|+...|..+|+.+
T Consensus 666 RPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 666 RPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREA 729 (802)
T ss_pred CCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHH
Confidence 899999999999999999999888773111 222222 367777777666643
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-39 Score=358.58 Aligned_cols=401 Identities=23% Similarity=0.346 Sum_probs=303.4
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeE
Q 002623 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQII 351 (899)
Q Consensus 272 ~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~I 351 (899)
+-+.+.++|++||||+|||.+++++|++. ++.++.++.+.++. ++.|+.+..+++.|.++.....|.|
T Consensus 214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli~--k~~gEte~~LR~~f~~a~k~~~psi 281 (693)
T KOG0730|consen 214 GIKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELIS--KFPGETESNLRKAFAEALKFQVPSI 281 (693)
T ss_pred CCCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHHH--hcccchHHHHHHHHHHHhccCCCee
Confidence 44677899999999999999999999998 89999999999984 5889999999999999987655999
Q ss_pred EEEccchhhccCCCCC-c-hHHHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHc-cCc-eEEecCCCHHHH
Q 002623 352 LFIDEIHTVVGAGATN-G-AMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER-RFQ-QVYVDQPNVEDT 423 (899)
Q Consensus 352 L~iDEi~~l~~~~~~~-~-~~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~-Rf~-~i~~~~ps~ee~ 423 (899)
+||||++.+.+.+... + ...+...|+.+++ .+++++|++||.+. .+|++++| ||+ .+.|..|+..++
T Consensus 282 i~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~R 356 (693)
T KOG0730|consen 282 IFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGR 356 (693)
T ss_pred EeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchhH
Confidence 9999999999876543 2 3444455555554 57899999999997 79999998 998 899999999999
Q ss_pred HHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHH
Q 002623 424 ISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMER 503 (899)
Q Consensus 424 ~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~~~~~~~~l~~~~~~i~~~~~e~ 503 (899)
.+|++.+.++++ .. ++..+..++..+.+|... ++..++.+|....-.+
T Consensus 357 ldIl~~l~k~~~----~~-~~~~l~~iA~~thGyvGa-----DL~~l~~ea~~~~~r~---------------------- 404 (693)
T KOG0730|consen 357 LDILRVLTKKMN----LL-SDVDLEDIAVSTHGYVGA-----DLAALCREASLQATRR---------------------- 404 (693)
T ss_pred HHHHHHHHHhcC----Cc-chhhHHHHHHHccchhHH-----HHHHHHHHHHHHHhhh----------------------
Confidence 999999998843 33 567777888888877432 3334443333211100
Q ss_pred HhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcHHHHHHhhhccH
Q 002623 504 LSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSL 583 (899)
Q Consensus 504 ~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (899)
. ..++..+
T Consensus 405 ----------------------------------------------------------~------~~~~~~A-------- 412 (693)
T KOG0730|consen 405 ----------------------------------------------------------T------LEIFQEA-------- 412 (693)
T ss_pred ----------------------------------------------------------h------HHHHHHH--------
Confidence 0 0000000
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHH
Q 002623 584 NALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAE 663 (899)
Q Consensus 584 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~ 663 (899)
...+.++.+.+.+ ....+.-|++|-|+++.++.+..
T Consensus 413 -------------------------~~~i~psa~Re~~-------------------ve~p~v~W~dIGGlE~lK~elq~ 448 (693)
T KOG0730|consen 413 -------------------------LMGIRPSALREIL-------------------VEMPNVSWDDIGGLEELKRELQQ 448 (693)
T ss_pred -------------------------HhcCCchhhhhee-------------------ccCCCCChhhccCHHHHHHHHHH
Confidence 0011222222222 11222347889999999999998
Q ss_pred HHHH--------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCc
Q 002623 664 AIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYV 735 (899)
Q Consensus 664 ~l~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~ 735 (899)
+|.. .+.|+.+|+ .+|||||||||||++|+++|+.. +.+|+.+.+.++. ++++|.....
T Consensus 449 ~V~~p~~~pe~F~r~Gi~ppk----GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~-----sk~vGeSEr~- 515 (693)
T KOG0730|consen 449 AVEWPLKHPEKFARFGISPPK----GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELF-----SKYVGESERA- 515 (693)
T ss_pred HHhhhhhchHHHHHhcCCCCc----eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHH-----HHhcCchHHH-
Confidence 8742 355666554 49999999999999999999999 8999999999884 4455554433
Q ss_pred ccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChh
Q 002623 736 GYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (899)
Q Consensus 736 g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~ 804 (899)
.+.++...+++.++|+||||||.+. ..+++.||+.||... ..++++||++||.
T Consensus 516 ----ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNR--- 579 (693)
T KOG0730|consen 516 ----IREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNR--- 579 (693)
T ss_pred ----HHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCC---
Confidence 2567888888888999999999864 348899999998532 2258999999999
Q ss_pred hhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHh--ccceEEecCCCCHHHHHHHHHHHHHHHHh-------hcccC
Q 002623 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSFSKV-------SWIYS 875 (899)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~--R~d~~i~f~~l~~e~i~~I~~~~l~~~~~-------~~~~~ 875 (899)
...+++++++ |||.+|++++++.+...+|++.+++++.. ++...
T Consensus 580 ---------------------------pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 580 ---------------------------PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQA 632 (693)
T ss_pred ---------------------------hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 7888999995 99999999999999999999999998764 33334
Q ss_pred CCccCHHHHHHhhccccc
Q 002623 876 PWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 876 ~~~~~~~~l~~~~~~~~~ 893 (899)
..+||...|..+|+.+-.
T Consensus 633 T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 633 TEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred hccCChHHHHHHHHHHHH
Confidence 578899999999986543
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.8e-34 Score=345.87 Aligned_cols=441 Identities=24% Similarity=0.386 Sum_probs=294.3
Q ss_pred CCCCCCcCchHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 252 GKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~-------------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
-+++++.|.+..++.+.+.+. -..+.++||+||||||||++++++|+.+ +.+++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEe
Confidence 467889999988777766542 1345789999999999999999999998 88899999
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC-c--hHHHHHHHhhhhc----CCCeEEEEec
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-G--AMDAGNLLKPMLG----RGELRCIGAT 391 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~-~--~~~~~~~L~~~l~----~~~v~~I~at 391 (899)
.+.+.. +|.|+.+..++.+|..+.. ..|+||||||+|.+.+.++.. + ...+.+.|..+++ ++.+.+|++|
T Consensus 245 ~~~i~~--~~~g~~~~~l~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 245 GPEIMS--KYYGESEERLREIFKEAEE-NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred cHHHhc--ccccHHHHHHHHHHHHHHh-cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 888774 4789999999999998875 457899999999998765432 1 1334555555553 5789999999
Q ss_pred ChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCC-CHHHHHHHHHhcccccCCCCChhhH
Q 002623 392 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRI-SDSALVEAAILSDRYISGRFLPDKA 467 (899)
Q Consensus 392 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i-~~~~l~~~~~ls~~~i~~~~~p~~a 467 (899)
|... .+|+++++ ||+ .|.++.|+.+++.+||+..... +.+ .+..+..++..+.+|. +...
T Consensus 322 n~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~------~~l~~d~~l~~la~~t~G~~-----gadl 385 (733)
T TIGR01243 322 NRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN------MPLAEDVDLDKLAEVTHGFV-----GADL 385 (733)
T ss_pred CChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC------CCCccccCHHHHHHhCCCCC-----HHHH
Confidence 9886 68999998 998 7999999999999999955543 222 2334666777776653 3333
Q ss_pred HHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 468 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 547 (899)
Q Consensus 468 ~~lld~a~~~~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~ 547 (899)
..++..++..+.-+. +.. . ....+.
T Consensus 386 ~~l~~~a~~~al~r~-------------~~~---~--~~~~~~------------------------------------- 410 (733)
T TIGR01243 386 AALAKEAAMAALRRF-------------IRE---G--KINFEA------------------------------------- 410 (733)
T ss_pred HHHHHHHHHHHHHHH-------------hhc---c--cccccc-------------------------------------
Confidence 344444332211000 000 0 000000
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcC
Q 002623 548 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 627 (899)
Q Consensus 548 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~ 627 (899)
..+ .. . ..-...++.+++...+....
T Consensus 411 ---------~~i-------------~~---------------------~---------~~~~~~v~~~df~~Al~~v~-- 436 (733)
T TIGR01243 411 ---------EEI-------------PA---------------------E---------VLKELKVTMKDFMEALKMVE-- 436 (733)
T ss_pred ---------ccc-------------cc---------------------h---------hcccccccHHHHHHHHhhcc--
Confidence 000 00 0 00001123333333332211
Q ss_pred CcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHH--------HcCCCCCCCCcceeEEeccCCCcHHHHHHHH
Q 002623 628 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKAL 699 (899)
Q Consensus 628 ~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~l 699 (899)
|.. + ...+......-|.++.|++.+++.|...+... ..+...| . .+||+||||||||++|+++
T Consensus 437 ps~-~----~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~---~-giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 437 PSA-I----REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPP---K-GVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred ccc-c----chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC---c-eEEEECCCCCCHHHHHHHH
Confidence 100 0 01111122334678999999999998887531 1233322 2 4999999999999999999
Q ss_pred HHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC------------hHH
Q 002623 700 ASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDV 767 (899)
Q Consensus 700 a~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~------------~~~ 767 (899)
|..+ +.+|+.++++++... ++|..... .+.++...+...++||||||||.+. ..+
T Consensus 508 A~e~---~~~fi~v~~~~l~~~-----~vGese~~-----i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~ 574 (733)
T TIGR01243 508 ATES---GANFIAVRGPEILSK-----WVGESEKA-----IREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRI 574 (733)
T ss_pred HHhc---CCCEEEEehHHHhhc-----ccCcHHHH-----HHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHH
Confidence 9998 789999999876332 33322211 2355666777888999999999874 236
Q ss_pred HHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccce
Q 002623 768 FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDE 845 (899)
Q Consensus 768 ~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~ 845 (899)
.+.|+..|+.-. ...+++||+|||. ...++|+++ +|||.
T Consensus 575 ~~~lL~~ldg~~---------~~~~v~vI~aTn~------------------------------~~~ld~allRpgRfd~ 615 (733)
T TIGR01243 575 VNQLLTEMDGIQ---------ELSNVVVIAATNR------------------------------PDILDPALLRPGRFDR 615 (733)
T ss_pred HHHHHHHhhccc---------CCCCEEEEEeCCC------------------------------hhhCCHhhcCCCccce
Confidence 678888887410 2247999999998 678899998 59999
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 846 YIVFQPLDRDQISSIVRLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 846 ~i~f~~l~~e~i~~I~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
+|.|++|+.++..+|++.++.+... .+.....+++...+..+|+.+
T Consensus 616 ~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A 668 (733)
T TIGR01243 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREA 668 (733)
T ss_pred EEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999887765432 222234567777777777643
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-31 Score=293.21 Aligned_cols=436 Identities=20% Similarity=0.279 Sum_probs=290.7
Q ss_pred CCcCchHHHHHHHHHhhcCC---------CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc
Q 002623 256 PVIGRDDEIRRCIQILSRRT---------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~~~---------~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~ 326 (899)
+..+++.-+..+.+++.-+. ...+||+|+||||||++++++|+++ |.+++.+||.++.+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~- 470 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAE- 470 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhc-
Confidence 34556666666666663321 2346999999999999999999999 999999999999865
Q ss_pred cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc-------CCCeEEEEecChhHHHhh
Q 002623 327 KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKY 399 (899)
Q Consensus 327 ~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~~~v~~I~at~~~~~~~~ 399 (899)
..+..+.++...|..++.. .|+|||+-.+|.+....+..........+...+. .+.+.+|++|+..+
T Consensus 471 -s~~~~etkl~~~f~~a~~~-~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~---- 544 (953)
T KOG0736|consen 471 -SASHTETKLQAIFSRARRC-SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE---- 544 (953)
T ss_pred -ccchhHHHHHHHHHHHhhc-CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc----
Confidence 4577888899999988764 6899999999988754444444445555555543 45889999999887
Q ss_pred hccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCC-HHHHHHHHHhcccccCCCCChhhHHHHHHHHHHh
Q 002623 400 IEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRIS-DSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 400 ~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~-~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~ 477 (899)
.+++.+++-|- .|.++.|+.++|.+||+.+..... +. +.-+..++..+++|. +.....+++..-
T Consensus 545 -~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~------~n~~v~~k~~a~~t~gfs-----~~~L~~l~~~~s-- 610 (953)
T KOG0736|consen 545 -DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP------LNQDVNLKQLARKTSGFS-----FGDLEALVAHSS-- 610 (953)
T ss_pred -cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc------cchHHHHHHHHHhcCCCC-----HHHHHHHhcCch--
Confidence 78899999775 899999999999999998887522 22 223344455444432 212222221110
Q ss_pred hhhhccCCchhHHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002623 478 LKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEID 557 (899)
Q Consensus 478 ~~~~~~~~~~~l~~~~~~i~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~ 557 (899)
++ ...+
T Consensus 611 -----------~~--------------------------~~~~------------------------------------- 616 (953)
T KOG0736|consen 611 -----------LA--------------------------AKTR------------------------------------- 616 (953)
T ss_pred -----------HH--------------------------HHHH-------------------------------------
Confidence 00 0000
Q ss_pred HHhHHHHHHHHhhcHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHH-------hcCCcc
Q 002623 558 RVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKW-------TGIPVS 630 (899)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~-------~g~~~~ 630 (899)
++.+.-...+. +.....-.+-...++++++...+++. .|-|
T Consensus 617 -----i~~~~l~g~~~-------------------------~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAP-- 664 (953)
T KOG0736|consen 617 -----IKNKGLAGGLQ-------------------------EEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAP-- 664 (953)
T ss_pred -----HHhhcccccch-------------------------hccccccccccceecHHHHHHHHHHHHHhhhhhcCCC--
Confidence 00000000000 00000001112334555555444432 2222
Q ss_pred cchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHH-------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHh
Q 002623 631 KLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYM 703 (899)
Q Consensus 631 ~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~-------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l 703 (899)
.+.+.-|++|.|.++++..|.+.|.. ...|... .. .+|||||||||||.+|+++|..+
T Consensus 665 -----------KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrk---RS-GILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 665 -----------KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRK---RS-GILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred -----------CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccc---cc-eeEEECCCCCchHHHHHHHHhhc
Confidence 13344589999999999999998853 2223321 11 39999999999999999999998
Q ss_pred cCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChH-------------HHHH
Q 002623 704 FNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSD-------------VFNV 770 (899)
Q Consensus 704 ~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~-------------~~~~ 770 (899)
.-.|+++...++.+. ++|....+ .+.+++..+.+.+|||||||+|++.|. +..+
T Consensus 730 ---sL~FlSVKGPELLNM-----YVGqSE~N-----VR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQ 796 (953)
T KOG0736|consen 730 ---SLNFLSVKGPELLNM-----YVGQSEEN-----VREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQ 796 (953)
T ss_pred ---eeeEEeecCHHHHHH-----HhcchHHH-----HHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHH
Confidence 788999998888544 45544433 367889999999999999999998864 7888
Q ss_pred HHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEe
Q 002623 771 FLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIV 848 (899)
Q Consensus 771 Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~ 848 (899)
||..||. +.++ +...+.||.+||. .+.++|+|+ +|||..+.
T Consensus 797 LLAELDg--ls~~-----~s~~VFViGATNR------------------------------PDLLDpALLRPGRFDKLvy 839 (953)
T KOG0736|consen 797 LLAELDG--LSDS-----SSQDVFVIGATNR------------------------------PDLLDPALLRPGRFDKLVY 839 (953)
T ss_pred HHHHhhc--ccCC-----CCCceEEEecCCC------------------------------ccccChhhcCCCccceeEE
Confidence 9999885 2221 2357899999999 778889988 89999999
Q ss_pred cCCCC-HHHHHHHHHHHHHHHHhhc--------ccCCCccCHHHHHHhhccccc
Q 002623 849 FQPLD-RDQISSIVRLQVSFSKVSW--------IYSPWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 849 f~~l~-~e~i~~I~~~~l~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 893 (899)
+.+.. .+....+++..-+++..+- ...+..++.+.+-.+|..+|.
T Consensus 840 vG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l 893 (953)
T KOG0736|consen 840 VGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAML 893 (953)
T ss_pred ecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHH
Confidence 98876 4555667766666554321 123456666666666766664
No 13
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-29 Score=280.24 Aligned_cols=411 Identities=20% Similarity=0.240 Sum_probs=268.8
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~i 354 (899)
...|+||.||+|+|||.||+++++++.... .+++..++|+.+.... ...+...++.+|.++.. .+|.|+++
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~-~~PSiIvL 500 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALW-YAPSIIVL 500 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhccchh--HHHHHHHHHHHHHHHHh-hCCcEEEE
Confidence 456899999999999999999999985322 5778888998875321 33444455666666665 46899999
Q ss_pred ccchhhccCCCCCchH------HHH----HHHhhhhcCC-CeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCH
Q 002623 355 DEIHTVVGAGATNGAM------DAG----NLLKPMLGRG-ELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNV 420 (899)
Q Consensus 355 DEi~~l~~~~~~~~~~------~~~----~~L~~~l~~~-~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ 420 (899)
|++|.|.++..++++. ... ++.+.++.++ .+.+|++.+... .++|-|.+ +|+ .+.++.|..
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcch
Confidence 9999999744433221 112 2333344444 458888877765 67777766 788 789999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhhccC-CchhHHHHHHHHHHH
Q 002623 421 EDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITS-KPTALDEINRSVLKL 499 (899)
Q Consensus 421 ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~~~~-~~~~l~~~~~~i~~~ 499 (899)
.+|.+||+.++.+ ....+....++.++..+.+| .+.+..-+++.|...+.....+ .+..+
T Consensus 576 ~~R~~IL~~~~s~----~~~~~~~~dLd~ls~~TEGy-----~~~DL~ifVeRai~~a~leris~~~kll---------- 636 (952)
T KOG0735|consen 576 TRRKEILTTIFSK----NLSDITMDDLDFLSVKTEGY-----LATDLVIFVERAIHEAFLERISNGPKLL---------- 636 (952)
T ss_pred hHHHHHHHHHHHh----hhhhhhhHHHHHHHHhcCCc-----cchhHHHHHHHHHHHHHHHHhccCcccc----------
Confidence 9999999988876 22444556666677777766 3445555555554332210000 00000
Q ss_pred HHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcHHHHHHhh
Q 002623 500 EMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAAELK 579 (899)
Q Consensus 500 ~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 579 (899)
.+..++++-+.
T Consensus 637 -----------------------------------------------------------tke~f~ksL~~---------- 647 (952)
T KOG0735|consen 637 -----------------------------------------------------------TKELFEKSLKD---------- 647 (952)
T ss_pred -----------------------------------------------------------hHHHHHHHHHh----------
Confidence 00000000000
Q ss_pred hccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHH
Q 002623 580 YGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVK 659 (899)
Q Consensus 580 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~ 659 (899)
+.+..+ -|+...+- .+.-|.+|.|..++++
T Consensus 648 --------------------------------F~P~aL-------R~ik~~k~-----------tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 648 --------------------------------FVPLAL-------RGIKLVKS-----------TGIRWEDIGGLFEAKK 677 (952)
T ss_pred --------------------------------cChHHh-------hhcccccc-----------CCCCceecccHHHHHH
Confidence 000000 01111110 0012567888888888
Q ss_pred HHHHHHHHHH-cC----CCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCC
Q 002623 660 SVAEAIQRSR-AG----LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY 734 (899)
Q Consensus 660 ~l~~~l~~~~-~~----~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~ 734 (899)
.+.+.+..-. .. ..+-+.+ ..+|||||||||||.+|-++|..+ +..|+.+...++ .++++|+....
T Consensus 678 ~l~~~i~~P~kyp~if~~~plr~~-~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPEl-----L~KyIGaSEq~ 748 (952)
T KOG0735|consen 678 VLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPEL-----LSKYIGASEQN 748 (952)
T ss_pred HHHHHHhccccchHHHhhCCcccc-cceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHH-----HHHHhcccHHH
Confidence 8888875311 10 0011122 249999999999999999999988 788999988887 45566665443
Q ss_pred cccccccchhHHHhhCCCeEEEEeCCCccChH-----------HHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCCh
Q 002623 735 VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSD-----------VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (899)
Q Consensus 735 ~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~-----------~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~ 803 (899)
+ +.+++..+.+.+|||||||+|++.|. +.|.||+.||..+.- ..+.|+++|..
T Consensus 749 v-----R~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl---------~GV~i~aaTsR-- 812 (952)
T KOG0735|consen 749 V-----RDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL---------DGVYILAATSR-- 812 (952)
T ss_pred H-----HHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc---------ceEEEEEecCC--
Confidence 3 57888888899999999999998753 899999999864322 24677777776
Q ss_pred hhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHHHHHh-------hccc
Q 002623 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSKV-------SWIY 874 (899)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~-------~~~~ 874 (899)
.+.++|+|+ +|+|..|..+.+++.+..+|++..-+.+.. .+..
T Consensus 813 ----------------------------pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~ 864 (952)
T KOG0735|consen 813 ----------------------------PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQ 864 (952)
T ss_pred ----------------------------ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhh
Confidence 677888888 899999999999999988888876664432 1222
Q ss_pred CCCccCHHHHHHhhcc
Q 002623 875 SPWHFNYEMLVKFCYL 890 (899)
Q Consensus 875 ~~~~~~~~~l~~~~~~ 890 (899)
...+|+.+.+..+|..
T Consensus 865 ~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 865 KTDGFTGADLQSLLYN 880 (952)
T ss_pred hcCCCchhhHHHHHHH
Confidence 2356777777766653
No 14
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.6e-25 Score=246.67 Aligned_cols=317 Identities=20% Similarity=0.308 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcHHH---HHHhhhccHHHHHHHHHHHHHHHHHHh--
Q 002623 527 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNR---AAELKYGSLNALQRQLESAEKELNEYI-- 601 (899)
Q Consensus 527 ~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 601 (899)
++..+++.+......+...++-++.+. .+++.++++++|+|.++. +.+...|...+-..++.+..+.+....
T Consensus 189 ~v~~Rlek~l~~l~~ei~~~~~ek~I~---~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p 265 (782)
T COG0466 189 DVKERLEKLLDLLEKEIDLLQLEKRIR---KKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLP 265 (782)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCC
Confidence 455666666666666666666556665 468889999999999986 344444433221222333322222211
Q ss_pred --------h---cCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHc
Q 002623 602 --------S---SGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRA 670 (899)
Q Consensus 602 --------~---~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~ 670 (899)
+ .-..|....-....+..++++.+.+||.+.+. +..++......|.++-.|.+++++.|.+.+.....
T Consensus 266 ~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l 344 (782)
T COG0466 266 KEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKL 344 (782)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 0 01123333446678899999999999997544 55678888889999999999999999998754333
Q ss_pred CCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh-h
Q 002623 671 GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-R 749 (899)
Q Consensus 671 ~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~ 749 (899)
...-.+|+ ++|+||||||||++++.||+.+ +..|+++..+.+ .+.+.+-|+...|+|...|+.+.+..+ .
T Consensus 345 -~~~~kGpI--LcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGv---rDEAEIRGHRRTYIGamPGrIiQ~mkka~ 415 (782)
T COG0466 345 -TKKLKGPI--LCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGV---RDEAEIRGHRRTYIGAMPGKIIQGMKKAG 415 (782)
T ss_pred -hccCCCcE--EEEECCCCCCchhHHHHHHHHh---CCCEEEEecCcc---ccHHHhccccccccccCChHHHHHHHHhC
Confidence 23345676 9999999999999999999999 889999999998 566788899999999999887766665 4
Q ss_pred CCCeEEEEeCCCccChHH----HHHHHHhhcCC---eeecCC-CceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHH
Q 002623 750 RPYAVILFDEIEKAHSDV----FNVFLQILDDG---RVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYE 821 (899)
Q Consensus 750 ~~~~vl~lDEid~l~~~~----~~~Ll~~le~g---~~~~~~-g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~ 821 (899)
..+.|++|||||++..+. ..+||.+||.. .|.|.. ....|.++++||+|+|.
T Consensus 416 ~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs-------------------- 475 (782)
T COG0466 416 VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS-------------------- 475 (782)
T ss_pred CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc--------------------
Confidence 456699999999998664 58999999853 677766 66778899999999998
Q ss_pred HHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHh---hcccCCCccCHHHHHHh
Q 002623 822 TIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV---SWIYSPWHFNYEMLVKF 887 (899)
Q Consensus 822 ~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~---~~~~~~~~~~~~~l~~~ 887 (899)
.+.++++|++|. ++|.+..|+.++..+|+.++|-.-.. .+......|+.++|..+
T Consensus 476 ----------l~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~i 533 (782)
T COG0466 476 ----------LDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDI 533 (782)
T ss_pred ----------cccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHH
Confidence 778999999999 99999999999999999988764332 22223467777775433
No 15
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.92 E-value=1.9e-24 Score=239.39 Aligned_cols=265 Identities=16% Similarity=0.219 Sum_probs=218.4
Q ss_pred HHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCC
Q 002623 595 KELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD 674 (899)
Q Consensus 595 ~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~ 674 (899)
....+++.+..+.+.++++.+.+...+.+......... +......-.......++|++.+++.+...+.+......
T Consensus 90 ~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~---e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a- 165 (464)
T COG2204 90 TAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQR---ENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDA- 165 (464)
T ss_pred HHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhh---hhhhhhhccccccCCceecCHHHHHHHHHHHHHhCCCC-
Confidence 34455666777888899999999999988755432111 00000011113467899999999999999987654433
Q ss_pred CCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCC-CcccccccchhHHHhhCCCe
Q 002623 675 PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYA 753 (899)
Q Consensus 675 ~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~ 753 (899)
++|++|++||||..+|++|++...+.+.|||.+||+.+....-.+.+||+.+| ++|....+ .+.+..+++|
T Consensus 166 ------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r--~G~fE~A~GG 237 (464)
T COG2204 166 ------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRR--IGRFEQANGG 237 (464)
T ss_pred ------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCccccc--CcceeEcCCc
Confidence 49999999999999999999999988999999999999988888999999887 55544332 3678889999
Q ss_pred EEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHh
Q 002623 754 VILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 833 (899)
Q Consensus 754 vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (899)
.||||||..|+.++|..||++|+++.++.-.|...-.-+++||++||........ .+
T Consensus 238 TLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~-----------------------~G 294 (464)
T COG2204 238 TLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA-----------------------AG 294 (464)
T ss_pred eEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH-----------------------cC
Confidence 9999999999999999999999999998877766666799999999996554433 78
Q ss_pred cCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhcccccc
Q 002623 834 IFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTI 894 (899)
Q Consensus 834 ~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 894 (899)
.|+.+|++|++. .|.+|||. .+||..++++++++++.+++.....|+++++..++.|.|+.
T Consensus 295 ~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG 358 (464)
T COG2204 295 RFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG 358 (464)
T ss_pred CcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCh
Confidence 999999999977 58999998 79999999999999999999999999999999999999985
No 16
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-23 Score=225.50 Aligned_cols=174 Identities=25% Similarity=0.382 Sum_probs=125.8
Q ss_pred HHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh
Q 002623 267 CIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES 346 (899)
Q Consensus 267 ~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~ 346 (899)
+++.|....-+.+|||||||||||.+|+.|...+... .|.. +|-+.+. .+|+|+.|+.++++|..+.+.
T Consensus 247 vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr-ePKI--------VNGPeIL--~KYVGeSE~NvR~LFaDAEeE 315 (744)
T KOG0741|consen 247 VIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR-EPKI--------VNGPEIL--NKYVGESEENVRKLFADAEEE 315 (744)
T ss_pred HHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC-CCcc--------cCcHHHH--HHhhcccHHHHHHHHHhHHHH
Confidence 3455555666788999999999999999999998432 2322 3444455 469999999999999988752
Q ss_pred -------CCCeEEEEccchhhccCCCCC-c----hHHHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHc--
Q 002623 347 -------EGQIILFIDEIHTVVGAGATN-G----AMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER-- 408 (899)
Q Consensus 347 -------~~~~IL~iDEi~~l~~~~~~~-~----~~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~-- 408 (899)
.+=-|+++||||.++..+++. | ...+.|-|+.-++ -.++.+||-||+.+ -+|.||+|
T Consensus 316 ~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPG 390 (744)
T KOG0741|consen 316 QRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPG 390 (744)
T ss_pred HHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCC
Confidence 122388899999999766543 1 1234454544443 24899999999998 58999999
Q ss_pred cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 409 RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 409 Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
||. .+++..|+..-|.+|++-.-+++..+. .--++-.+..++.++..|
T Consensus 391 RlEVqmEIsLPDE~gRlQIl~IHT~rMre~~-~l~~dVdl~elA~lTKNf 439 (744)
T KOG0741|consen 391 RLEVQMEISLPDEKGRLQILKIHTKRMRENN-KLSADVDLKELAALTKNF 439 (744)
T ss_pred ceEEEEEEeCCCccCceEEEEhhhhhhhhcC-CCCCCcCHHHHHHHhcCC
Confidence 998 799999999999999987776655432 222333456667777654
No 17
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.92 E-value=5.8e-23 Score=250.16 Aligned_cols=318 Identities=19% Similarity=0.261 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcHHHH---HHhhhccHHHHHHHHHHHHHHHHHHh--
Q 002623 527 LLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRA---AELKYGSLNALQRQLESAEKELNEYI-- 601 (899)
Q Consensus 527 ~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~-- 601 (899)
++..+++.+......+.+.+.-.+.+. .+++.++++.+++|.+++. .+...|...+-+.++....+.+.+..
T Consensus 186 d~~~RL~~l~~lL~~ele~l~l~~~I~---~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~~~ 262 (775)
T TIGR00763 186 NIEKRLKKALELLKKELELLKLQNKIT---KKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELKLP 262 (775)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcCCC
Confidence 345555555555666665555555554 3566677777777777752 22223321111112222222221111
Q ss_pred -----------hcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHc
Q 002623 602 -----------SSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRA 670 (899)
Q Consensus 602 -----------~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~ 670 (899)
..-..+....-....+..+++.++++||.+.... ...+......+.++++|++.+++.+...+.....
T Consensus 263 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~ 341 (775)
T TIGR00763 263 EEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKL 341 (775)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Confidence 0001122233455677889999999999986655 6678888889999999999999999987654332
Q ss_pred CCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhh-
Q 002623 671 GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR- 749 (899)
Q Consensus 671 ~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~- 749 (899)
.. .+++| +++|+||||||||++|++||+.+ +.++++++++.+.+ .+.+.|+...|+|...+.. ...+..
T Consensus 342 ~~-~~~~~--~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~~~~~~~---~~~i~g~~~~~~g~~~g~i-~~~l~~~ 411 (775)
T TIGR00763 342 RG-KMKGP--ILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVRD---EAEIRGHRRTYVGAMPGRI-IQGLKKA 411 (775)
T ss_pred hc-CCCCc--eEEEECCCCCCHHHHHHHHHHHh---cCCeEEEeCCCccc---HHHHcCCCCceeCCCCchH-HHHHHHh
Confidence 11 22334 59999999999999999999999 78899999877633 3455666677777655433 333432
Q ss_pred -CCCeEEEEeCCCccChH----HHHHHHHhhcC---CeeecCC-CceeeeCCEEEEEecCCChhhhhccCCCCCCCcchH
Q 002623 750 -RPYAVILFDEIEKAHSD----VFNVFLQILDD---GRVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 820 (899)
Q Consensus 750 -~~~~vl~lDEid~l~~~----~~~~Ll~~le~---g~~~~~~-g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~ 820 (899)
..++||||||||+++++ ..++|+++||. +.+.|.. +..+++++++||+|||.
T Consensus 412 ~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~------------------- 472 (775)
T TIGR00763 412 KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS------------------- 472 (775)
T ss_pred CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC-------------------
Confidence 23459999999999764 45899999985 5677765 66788899999999998
Q ss_pred HHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhh---cccCCCccCHHHHHHhhc
Q 002623 821 ETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS---WIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 821 ~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~---~~~~~~~~~~~~l~~~~~ 889 (899)
...++|+|++|| .+|.|++|+.++..+|++.++.....+ +......++.+++..++.
T Consensus 473 -----------~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~ 532 (775)
T TIGR00763 473 -----------IDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK 532 (775)
T ss_pred -----------chhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH
Confidence 567899999999 689999999999999999888543222 223345788888766554
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.1e-23 Score=239.84 Aligned_cols=413 Identities=23% Similarity=0.286 Sum_probs=260.1
Q ss_pred HHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh
Q 002623 267 CIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES 346 (899)
Q Consensus 267 ~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~ 346 (899)
+.+.+......+++++||||+|||.++++++.. +.....++..... .++.|+.+..+..++..+...
T Consensus 9 ~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~ 75 (494)
T COG0464 9 LFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-----------GAEFLSINGPEIL--SKYVGESELRLRELFEEAEKL 75 (494)
T ss_pred HHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-----------cCcccccCcchhh--hhhhhHHHHHHHHHHHHHHHh
Confidence 344555678889999999999999999999987 1122444544444 458899999999999999875
Q ss_pred CCCeEEEEccchhhccCCCCC---chHHHHHHHhhhhc---CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecC
Q 002623 347 EGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG---RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQ 417 (899)
Q Consensus 347 ~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ 417 (899)
. ++++++||++.+.+..... -...+...+...++ ++.+.+++.|+... .+++++++ ||. .+.+..
T Consensus 76 ~-~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~ 149 (494)
T COG0464 76 A-PSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNL 149 (494)
T ss_pred C-CCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCC
Confidence 4 5899999999999777652 11223333333333 44577777777775 68899888 887 789999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCC-HHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 002623 418 PNVEDTISILRGLRERYELHHGVRIS-DSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSV 496 (899)
Q Consensus 418 ps~ee~~~Il~~~~~~~~~~~~~~i~-~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~~~~~~~~l~~~~~~i 496 (899)
|....+.+|+...... ..+. +.....++..+.+|... ....+...+......+
T Consensus 150 ~~~~~~~ei~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~r--------------- 203 (494)
T COG0464 150 PDEAGRLEILQIHTRL------MFLGPPGTGKTLAARTVGKSGA-----DLGALAKEAALRELRR--------------- 203 (494)
T ss_pred CCHHHHHHHHHHHHhc------CCCcccccHHHHHHhcCCccHH-----HHHHHHHHHHHHHHHh---------------
Confidence 9988877777655432 1111 23334444444333211 1111111111100000
Q ss_pred HHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcHHHHH
Q 002623 497 LKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRAA 576 (899)
Q Consensus 497 ~~~~~e~~~~~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~ 576 (899)
T Consensus 204 -------------------------------------------------------------------------------- 203 (494)
T COG0464 204 -------------------------------------------------------------------------------- 203 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccch
Q 002623 577 ELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDP 656 (899)
Q Consensus 577 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~ 656 (899)
.+ ........++.++....+.+..+. .. .....+..-|.++.|.+.
T Consensus 204 ------------~~-------------~~~~~~~~~~~~~~~~~l~~~~~~-~~--------~~~~~~~v~~~diggl~~ 249 (494)
T COG0464 204 ------------AI-------------DLVGEYIGVTEDDFEEALKKVLPS-RG--------VLFEDEDVTLDDIGGLEE 249 (494)
T ss_pred ------------hh-------------ccCcccccccHHHHHHHHHhcCcc-cc--------cccCCCCcceehhhcHHH
Confidence 00 000001112233333333332211 00 000111223566777777
Q ss_pred HHHHHHHHHHHHHcCCC----CCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCC
Q 002623 657 AVKSVAEAIQRSRAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP 732 (899)
Q Consensus 657 ~~~~l~~~l~~~~~~~~----~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~ 732 (899)
+++.+...+.....-.. ...+|...+||+||||||||++|+++|..+ +.+|+.++++++.+ +++|...
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~s-----k~vGese 321 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLS-----KWVGESE 321 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhc-----cccchHH
Confidence 77777777643211000 011222259999999999999999999988 88999999997743 3444433
Q ss_pred CCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCC
Q 002623 733 GYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (899)
Q Consensus 733 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~ 801 (899)
..+ +.++...++..++||||||+|++. ..+.+.|+..|+.-. ...++++|++||.
T Consensus 322 k~i-----r~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~ 387 (494)
T COG0464 322 KNI-----RELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR 387 (494)
T ss_pred HHH-----HHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCC
Confidence 222 456777777788999999999864 258888999887421 2346889999999
Q ss_pred ChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHh--ccceEEecCCCCHHHHHHHHHHHHHHHHh---------
Q 002623 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSFSKV--------- 870 (899)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~--R~d~~i~f~~l~~e~i~~I~~~~l~~~~~--------- 870 (899)
...++|+++. |||.+|.|++++.++..+|+...+.+...
T Consensus 388 ------------------------------p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~ 437 (494)
T COG0464 388 ------------------------------PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLE 437 (494)
T ss_pred ------------------------------ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHH
Confidence 6788899997 99999999999999999999999984332
Q ss_pred hcccCCCccCHHHHHHhhcc
Q 002623 871 SWIYSPWHFNYEMLVKFCYL 890 (899)
Q Consensus 871 ~~~~~~~~~~~~~l~~~~~~ 890 (899)
.+.....+++...+..+|..
T Consensus 438 ~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 438 ELAEITEGYSGADIAALVRE 457 (494)
T ss_pred HHHHHhcCCCHHHHHHHHHH
Confidence 11111234666666666654
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.8e-23 Score=221.40 Aligned_cols=195 Identities=28% Similarity=0.387 Sum_probs=157.0
Q ss_pred ccHHHHHhcCCCCCCcCchH------HHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE
Q 002623 243 KDLTAMASAGKLDPVIGRDD------EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~------~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (899)
.+|..++||.+++++|||+. .++++++ .....+.+|||||||||||+|+.||+.. +.+|..
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~ 78 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEA 78 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEE
Confidence 38999999999999999987 3455555 5777899999999999999999999998 899998
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecCh
Q 002623 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 393 (899)
Q Consensus 317 l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~ 393 (899)
++ +..+|.+ .++.++++++.. +...||||||||++. ...|..|++.+|+|.+++|||||.
T Consensus 79 ~s--Av~~gvk-------dlr~i~e~a~~~~~~gr~tiLflDEIHRfn--------K~QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 79 LS--AVTSGVK-------DLREIIEEARKNRLLGRRTILFLDEIHRFN--------KAQQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred ec--cccccHH-------HHHHHHHHHHHHHhcCCceEEEEehhhhcC--------hhhhhhhhhhhcCCeEEEEeccCC
Confidence 85 3444332 577888888643 347899999999998 556788999999999999999999
Q ss_pred hHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhh---hCCCCCHHHHHHHHHhcccccCCCCChhhHHHH
Q 002623 394 DEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELH---HGVRISDSALVEAAILSDRYISGRFLPDKAIDL 470 (899)
Q Consensus 394 ~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~---~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~l 470 (899)
+++ |.+.++|++|+..+.+.+.+.+++.+++...+...+.. ..+.+++++++.++.++++.. ..+..+
T Consensus 142 NPs---F~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~------R~aLN~ 212 (436)
T COG2256 142 NPS---FELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA------RRALNL 212 (436)
T ss_pred CCC---eeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH------HHHHHH
Confidence 997 89999999999999999999999999998744332211 124489999999999998631 244555
Q ss_pred HHHHHH
Q 002623 471 VDEAAA 476 (899)
Q Consensus 471 ld~a~~ 476 (899)
++.+..
T Consensus 213 LE~~~~ 218 (436)
T COG2256 213 LELAAL 218 (436)
T ss_pred HHHHHH
Confidence 555443
No 20
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.91 E-value=1.9e-24 Score=213.74 Aligned_cols=155 Identities=52% Similarity=0.865 Sum_probs=130.6
Q ss_pred CCcceeEEeccCCCcHHHHHHHHHHHhc-CCCCceEEeccccchh----hhhhhhhcCCCCCCcccccccchhHHHhhCC
Q 002623 677 RPIASFMFMGPTGVGKTELAKALASYMF-NTEEALVRIDMSEYME----KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRP 751 (899)
Q Consensus 677 ~p~~~lLl~Gp~GtGKT~lA~~la~~l~-~~~~~~~~i~~~~~~~----~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~ 751 (899)
+|.+++||+||+|||||++|++|++.++ +...+++.+||++|.. .+.++.++|.+++++++.+.+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~g---------- 70 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGG---------- 70 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHT----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchh----------
Confidence 5778999999999999999999999998 7889999999999998 777788899888888765443
Q ss_pred CeEEEEeCCCccCh-----------HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchH
Q 002623 752 YAVILFDEIEKAHS-----------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 820 (899)
Q Consensus 752 ~~vl~lDEid~l~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~ 820 (899)
|||||||||+++ .+|+.||++||+|++++..|+.+++.+++||+|+|.+........... ....
T Consensus 71 --VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~---~~~~ 145 (171)
T PF07724_consen 71 --VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSG---EAIE 145 (171)
T ss_dssp --EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHC---TCCH
T ss_pred --hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccc---cccH
Confidence 999999999999 999999999999999999999999999999999999887766532111 1223
Q ss_pred HHHHHHHHHHHHhcCChHHHhccceE
Q 002623 821 ETIKQRVMDAARSIFRPEFMNRVDEY 846 (899)
Q Consensus 821 ~~~~~~~~~~~~~~~~p~ll~R~d~~ 846 (899)
......+.+.+...|.|+|++|||.+
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 44455566777899999999999764
No 21
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.4e-23 Score=212.87 Aligned_cols=198 Identities=25% Similarity=0.379 Sum_probs=162.3
Q ss_pred CCCCCcCchHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l-------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
+++++=|.++.++.+.+.. .-.+++.+|||||||||||.||+++|+.. ++.|+.+..
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvg 218 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVG 218 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEecc
Confidence 4566667777666665543 34677899999999999999999999997 999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCC---CchHHHHHHHhhhhc-------CCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPMLG-------RGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l~-------~~~v~~I~ 389 (899)
|+++ .+|.|+....++++|.-|+.+ .|+|+||||||.+...+-. +|..+++..|.++|. ++++.+|+
T Consensus 219 SElV--qKYiGEGaRlVRelF~lArek-aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ 295 (406)
T COG1222 219 SELV--QKYIGEGARLVRELFELAREK-APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM 295 (406)
T ss_pred HHHH--HHHhccchHHHHHHHHHHhhc-CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence 9998 569999999999999998874 6999999999999866643 367889998888884 67999999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
|||..+ .+||||+| ||+ .|+|+.|+.+.+.+||+....++....+++ ++.++..+.+ +..+.
T Consensus 296 ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g-----~sGAd 360 (406)
T COG1222 296 ATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARLTEG-----FSGAD 360 (406)
T ss_pred ecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHhcCC-----CchHH
Confidence 999998 69999999 998 899999999999999999888866554444 4555666654 34557
Q ss_pred HHHHHHHHHHhh
Q 002623 467 AIDLVDEAAAKL 478 (899)
Q Consensus 467 a~~lld~a~~~~ 478 (899)
...++-+|+..+
T Consensus 361 lkaictEAGm~A 372 (406)
T COG1222 361 LKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHhHHH
Confidence 777788877654
No 22
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.90 E-value=1.7e-22 Score=224.06 Aligned_cols=238 Identities=23% Similarity=0.345 Sum_probs=169.0
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcCCCC----CC-----CCcceeEEeccCCCcHHHHHHHHHHHhcCCCCce
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD----PH-----RPIASFMFMGPTGVGKTELAKALASYMFNTEEAL 710 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~----~~-----~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~ 710 (899)
...+...|.+.|+||+++++.+..++...+.+... +. .+.+++||+||||||||++|++||+.+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 35677788899999999999999988654443322 11 113589999999999999999999988 7889
Q ss_pred EEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh-------hCCCeEEEEeCCCccCh--------------HHHH
Q 002623 711 VRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHS--------------DVFN 769 (899)
Q Consensus 711 ~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~l~~--------------~~~~ 769 (899)
..++++.+. +++|+|....+.+...++ .+.++||||||||++++ .+|+
T Consensus 145 ~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 888887652 345777655555655554 34557999999999987 6999
Q ss_pred HHHHhhcCCeeec---CCCceeeeCCEEEEEecCC---------ChhhhhccC-----CCCCCC--cc--hH-HHHHHHH
Q 002623 770 VFLQILDDGRVTD---SQGRTVSFTNTVIIMTSNV---------GSQYILNMD-----DETFPK--ET--AY-ETIKQRV 827 (899)
Q Consensus 770 ~Ll~~le~g~~~~---~~g~~~~~~~~iiI~ttN~---------~~~~~~~~~-----~~~~~~--~~--~~-~~~~~~~ 827 (899)
.||++|| |.+++ ..|+.+++.++++|+|+|. |.+.+.... -|+... .. .. +.+....
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999996 88776 4588889999999999999 444332210 111111 00 01 1122222
Q ss_pred HHHH-HhcCChHHHhccceEEecCCCCHHHHHHHHHHHHH----HHHhhcccC--CCccCHHHHHHhhcccc
Q 002623 828 MDAA-RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVS----FSKVSWIYS--PWHFNYEMLVKFCYLAF 892 (899)
Q Consensus 828 ~~~~-~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~----~~~~~~~~~--~~~~~~~~l~~~~~~~~ 892 (899)
.+.+ +..|.|+|++|+|.++.|.||+.+++.+|+...++ ++...+... ...++++++..++..++
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~ 364 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKAL 364 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCC
Confidence 2333 44599999999999999999999999999998644 444433222 36788888877766543
No 23
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=5.7e-23 Score=226.21 Aligned_cols=217 Identities=18% Similarity=0.284 Sum_probs=191.6
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
-+++|+|.+.++..+...+++...... ++|+.|++||||..+|++|++.+-+.+.||+.+||+.+.+..-.+.
T Consensus 243 ~f~~Iig~S~~m~~~~~~akr~A~tds-------tVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESE 315 (560)
T COG3829 243 TFDDIIGESPAMLRVLELAKRIAKTDS-------TVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESE 315 (560)
T ss_pred chhhhccCCHHHHHHHHHHHhhcCCCC-------cEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHH
Confidence 367899999999998888876543322 5999999999999999999999999999999999999999888899
Q ss_pred hcCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhh
Q 002623 727 LIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 805 (899)
Q Consensus 727 l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~ 805 (899)
+||..+| ++|...+|. .+.+..+++|.||||||..|+...|..||++|+++++..-.|......+++||++||.....
T Consensus 316 LFGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~ 394 (560)
T COG3829 316 LFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEK 394 (560)
T ss_pred HhCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHH
Confidence 9999887 677665432 37778889999999999999999999999999999988776766677899999999996655
Q ss_pred hhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHH
Q 002623 806 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYE 882 (899)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~ 882 (899)
+.+ .+.|+.+|++|++. -|.+|||. ++|+..++..++.++..++.+...+++++
T Consensus 395 ~i~-----------------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 395 MIA-----------------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred HHh-----------------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 544 78999999999987 48899998 79999999999999999999999999999
Q ss_pred HHHHhhcccccc
Q 002623 883 MLVKFCYLAFTI 894 (899)
Q Consensus 883 ~l~~~~~~~~~~ 894 (899)
++..+..++|+.
T Consensus 452 a~~~L~~y~WPG 463 (560)
T COG3829 452 ALALLLRYDWPG 463 (560)
T ss_pred HHHHHHhCCCCc
Confidence 999999999985
No 24
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.8e-22 Score=230.40 Aligned_cols=179 Identities=25% Similarity=0.306 Sum_probs=140.3
Q ss_pred CCcCchHHHHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccc---
Q 002623 256 PVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI--- 323 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~---------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~--- 323 (899)
.|+||++.|..+.+.+.+ ++..++||.||+|||||.||++||..+..+ ...++++|||+++
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~EkH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEKH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHHH
Confidence 399999999999998754 334577999999999999999999999443 4789999999973
Q ss_pred -------ccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------
Q 002623 324 -------AGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (899)
Q Consensus 324 -------~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------- 383 (899)
++..|+|.-+ ...+.++.+..+.+|+++|||+..+ .++.|+|+++|++|
T Consensus 565 sVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKAH--------pdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAH--------PDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhcC--------HHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 5556777544 2344555666678999999999998 89999999999876
Q ss_pred CeEEEEecChhH-------------------------HHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhh
Q 002623 384 ELRCIGATTLDE-------------------------YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH 437 (899)
Q Consensus 384 ~v~~I~at~~~~-------------------------~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~ 437 (899)
+.++|+|+|--. .+++ ..|+|++|++ .|.|.+.+.++..+|+...+.++...
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~--F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~ 711 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKH--FRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKR 711 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhh--CCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 557888888321 1111 3599999999 78888889999999998777665532
Q ss_pred -----hCCCCCHHHHHHHHHhc
Q 002623 438 -----HGVRISDSALVEAAILS 454 (899)
Q Consensus 438 -----~~~~i~~~~l~~~~~ls 454 (899)
..+.+++++.+++++.+
T Consensus 712 L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 712 LAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred HHhCCceEEECHHHHHHHHHhc
Confidence 34578999998888776
No 25
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.89 E-value=7e-23 Score=222.09 Aligned_cols=215 Identities=17% Similarity=0.262 Sum_probs=186.6
Q ss_pred cceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhc
Q 002623 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (899)
..|||++.++..+.+.|........ ++|+.|++||||..+||+|++.+.+.+.|||.+||+.+.+....+.+|
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~Sd~-------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKSDS-------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcCCC-------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 4799999999999999987654333 599999999999999999999999999999999999999998899999
Q ss_pred CCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhh
Q 002623 729 GAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (899)
Q Consensus 729 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~ 807 (899)
|+..| ++|....+ .+.+..+.+|.||||||..++..+|..||.+|++|++..-.|.....-+++||++||.+...
T Consensus 296 GHeKGAFTGA~~~r--~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~-- 371 (550)
T COG3604 296 GHEKGAFTGAINTR--RGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEE-- 371 (550)
T ss_pred cccccccccchhcc--CcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHH--
Confidence 99877 44533222 25566788899999999999999999999999999998777766666789999999995433
Q ss_pred ccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceE-EecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHH
Q 002623 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEML 884 (899)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~-i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l 884 (899)
.|. .+.|+.+|++|++.+ +.+|||. ++|+.-++.+++++++.+++.....++++++
T Consensus 372 ------------------~V~---~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al 430 (550)
T COG3604 372 ------------------MVR---DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEAL 430 (550)
T ss_pred ------------------HHH---cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHH
Confidence 333 789999999999774 8889997 6899999999999999999999999999999
Q ss_pred HHhhccccccc
Q 002623 885 VKFCYLAFTIR 895 (899)
Q Consensus 885 ~~~~~~~~~~~ 895 (899)
..+.++.|+.+
T Consensus 431 ~~L~~y~wPGN 441 (550)
T COG3604 431 ELLSSYEWPGN 441 (550)
T ss_pred HHHHcCCCCCc
Confidence 99999999853
No 26
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.89 E-value=2.1e-21 Score=233.64 Aligned_cols=313 Identities=20% Similarity=0.319 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcHHHH---HHhhhccH-------HHHHHHHHHH----
Q 002623 528 LKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVNLEIQQAEREYDLNRA---AELKYGSL-------NALQRQLESA---- 593 (899)
Q Consensus 528 l~~~l~~l~~~~~~e~~~l~~~~~~~e~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~l~~~---- 593 (899)
+..+++.+....+++.+.+.-.+.+. .+++.++++.+++|.+++. .+...|.. .+++..+...
T Consensus 189 ~~eRLe~Ll~lL~~Eleil~l~~~I~---~~v~~~~~k~q~e~~lreq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~ 265 (784)
T PRK10787 189 VNERLEYLMAMMESEIDLLQVEKRIR---NRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPK 265 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhcchhhhhhhcccccCCCcchhHHHHHHHHHHhcCCCH
Confidence 44455555555555555554444444 4566777778888877752 22222321 1122222111
Q ss_pred ------HHHHHHHhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHH
Q 002623 594 ------EKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQR 667 (899)
Q Consensus 594 ------~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~ 667 (899)
.+++..+. .+.........+..++++.+.+||.+.+. +...+......|.++.+|++.+++.+.+.+..
T Consensus 266 ~~~~~~~~e~~~~~----~~~~~~~e~~~~~~yl~~~~~~pw~~~~~-~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~ 340 (784)
T PRK10787 266 EAKEKAEAELQKLK----MMSPMSAEATVVRGYIDWMVQVPWNARSK-VKKDLRQAQEILDTDHYGLERVKDRILEYLAV 340 (784)
T ss_pred HHHHHHHHHHHHHH----hCCCCCchHHHHHHHHHHHHhCCCCCCCc-ccccHHHHHHHhhhhccCHHHHHHHHHHHHHH
Confidence 12222221 12233445567888999999999998654 44577778888999999999999999987764
Q ss_pred HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHH
Q 002623 668 SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVV 747 (899)
Q Consensus 668 ~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~ 747 (899)
... .....+| .++|+||||||||++++.+++.+ +.++++++++...+ ...+.|+...|.|...++.+....
T Consensus 341 ~~~-~~~~~g~--~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~d---~~~i~g~~~~~~g~~~G~~~~~l~ 411 (784)
T PRK10787 341 QSR-VNKIKGP--ILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVRD---EAEIRGHRRTYIGSMPGKLIQKMA 411 (784)
T ss_pred HHh-cccCCCc--eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCCC---HHHhccchhccCCCCCcHHHHHHH
Confidence 322 1223344 49999999999999999999998 67899999887643 455667666677666554433332
Q ss_pred h-hCCCeEEEEeCCCccChHH----HHHHHHhhcCC---eeecCC-CceeeeCCEEEEEecCCChhhhhccCCCCCCCcc
Q 002623 748 R-RRPYAVILFDEIEKAHSDV----FNVFLQILDDG---RVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKET 818 (899)
Q Consensus 748 ~-~~~~~vl~lDEid~l~~~~----~~~Ll~~le~g---~~~~~~-g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~ 818 (899)
+ ...+.|+||||||+++++. +++|+++||.+ .++|.. .-.++.++++||+|+|.
T Consensus 412 ~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~----------------- 474 (784)
T PRK10787 412 KVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS----------------- 474 (784)
T ss_pred hcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC-----------------
Confidence 2 2245699999999999875 59999999975 566665 44567899999999997
Q ss_pred hHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHH-HHHhhc--ccCCCccCHHHHHHhhc
Q 002623 819 AYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVS-FSKVSW--IYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~-~~~~~~--~~~~~~~~~~~l~~~~~ 889 (899)
. .++|+|++|| .+|.|.+|+.+++.+|++++|. +...+. ......++.+++..++.
T Consensus 475 -------------~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 475 -------------M-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred -------------C-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 4 4899999999 7899999999999999999996 333332 22346788888655543
No 27
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.1e-22 Score=220.03 Aligned_cols=239 Identities=21% Similarity=0.304 Sum_probs=191.6
Q ss_pred CChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCc
Q 002623 612 VTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVG 691 (899)
Q Consensus 612 v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtG 691 (899)
-..+....++++.+.+||++.+.+ .-.+..-...|.++-.|.+++++.|.+.|...+.... .++++ ++|+||||+|
T Consensus 375 sEfnvtrNYLdwlt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs-~qGkI--lCf~GPPGVG 450 (906)
T KOG2004|consen 375 SEFNVTRNYLDWLTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGS-VQGKI--LCFVGPPGVG 450 (906)
T ss_pred cchhHHHHHHHHHHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhccc-CCCcE--EEEeCCCCCC
Confidence 344667888999999999987655 4566667778889999999999999998876554332 45665 9999999999
Q ss_pred HHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh-hCCCeEEEEeCCCccChH----
Q 002623 692 KTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSD---- 766 (899)
Q Consensus 692 KT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~l~~~---- 766 (899)
||++|+.||+.+ +..|+++..+.+ .+++.+-|+...|+|...|+.+...-+ +..+.+++|||||++...
T Consensus 451 KTSI~kSIA~AL---nRkFfRfSvGG~---tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGD 524 (906)
T KOG2004|consen 451 KTSIAKSIARAL---NRKFFRFSVGGM---TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGD 524 (906)
T ss_pred cccHHHHHHHHh---CCceEEEecccc---ccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCC
Confidence 999999999999 888999999988 556778899999999998776655444 445669999999998743
Q ss_pred HHHHHHHhhcCC---eeecCC-CceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhc
Q 002623 767 VFNVFLQILDDG---RVTDSQ-GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNR 842 (899)
Q Consensus 767 ~~~~Ll~~le~g---~~~~~~-g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R 842 (899)
=-.+||.+||.. .|.|.. .-.+|.+++.||||.|. -..++|+|++|
T Consensus 525 PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~------------------------------idtIP~pLlDR 574 (906)
T KOG2004|consen 525 PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV------------------------------IDTIPPPLLDR 574 (906)
T ss_pred hHHHHHHhcChhhccchhhhccccccchhheEEEEeccc------------------------------cccCChhhhhh
Confidence 357899999853 566655 56788899999999999 68899999999
Q ss_pred cceEEecCCCCHHHHHHHHHHHHHHHHh-h--cccCCCccCHHH----HHHhhccc
Q 002623 843 VDEYIVFQPLDRDQISSIVRLQVSFSKV-S--WIYSPWHFNYEM----LVKFCYLA 891 (899)
Q Consensus 843 ~d~~i~f~~l~~e~i~~I~~~~l~~~~~-~--~~~~~~~~~~~~----l~~~~~~~ 891 (899)
. ++|.++.|..++..+|.+++|-.... . +..+...++.++ |..||..+
T Consensus 575 M-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEa 629 (906)
T KOG2004|consen 575 M-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREA 629 (906)
T ss_pred h-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999875543 2 222346667666 67778753
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.88 E-value=1.2e-22 Score=201.67 Aligned_cols=189 Identities=26% Similarity=0.389 Sum_probs=150.5
Q ss_pred HHHHhcCCCCCCcCchHHHHHHH---HHh------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE
Q 002623 246 TAMASAGKLDPVIGRDDEIRRCI---QIL------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (899)
Q Consensus 246 ~~~~~~~~l~~iiG~~~~i~~~~---~~l------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (899)
.+....-+|+++|||++.-+... +.| ..-.++|+||+||||||||.+|++||.+. +.+++.
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~ 181 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLL 181 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEE
Confidence 34456678999999998655433 233 22456899999999999999999999998 899999
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC----chHHHHHHHhhhhc----CCCeEEE
Q 002623 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLG----RGELRCI 388 (899)
Q Consensus 317 l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~----~~~v~~I 388 (899)
+....+++ .++|+...+++++++.+... .|||+||||+|.+.-.+.-+ ...++.|.|+.-|+ +-.|..|
T Consensus 182 vkat~liG--ehVGdgar~Ihely~rA~~~-aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 182 VKATELIG--EHVGDGARRIHELYERARKA-APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred echHHHHH--HHhhhHHHHHHHHHHHHHhc-CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 99999984 48999999999999999874 59999999999987444322 33567777777775 4479999
Q ss_pred EecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 389 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
++||.++ .+||++++||. .|+|..|+.+|+.+|++..++++... +... +..++..+.++
T Consensus 259 aaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp--v~~~---~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--VDAD---LRYLAAKTKGM 318 (368)
T ss_pred eecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc--cccC---HHHHHHHhCCC
Confidence 9999998 58999999998 89999999999999999999985532 3323 55566666543
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.88 E-value=2.8e-22 Score=200.20 Aligned_cols=189 Identities=24% Similarity=0.312 Sum_probs=132.8
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHh---hc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQIL---SR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l---~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (899)
.++.+.+||..|+++|||++.+....-.+ .. ....|+|||||||+||||||+.||+++ +.++..+
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~ 81 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKIT 81 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEE
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEec
Confidence 56788999999999999998766543322 22 234689999999999999999999999 8888877
Q ss_pred EcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--------------
Q 002623 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------- 383 (899)
Q Consensus 318 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------- 383 (899)
+.+.+.. .+ .+..++..+ ..+.||||||||++. ...+++|.++||++
T Consensus 82 sg~~i~k----~~----dl~~il~~l---~~~~ILFIDEIHRln--------k~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 82 SGPAIEK----AG----DLAAILTNL---KEGDILFIDEIHRLN--------KAQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp ECCC--S----CH----HHHHHHHT-----TT-EEEECTCCC----------HHHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred cchhhhh----HH----HHHHHHHhc---CCCcEEEEechhhcc--------HHHHHHHHHHhccCeEEEEeccccccce
Confidence 6543321 12 233444443 345699999999998 77899999999876
Q ss_pred ------CeEEEEecChhHHHhhhccCHHHHccCce-EEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 384 ------ELRCIGATTLDEYRKYIEKDPALERRFQQ-VYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 384 ------~v~~I~at~~~~~~~~~~~d~al~~Rf~~-i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
++.+|||||... .++++|++||.. ..+..++.+|+.+|+...... .++.+++++...++..|.
T Consensus 143 ~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsr- 212 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSR- 212 (233)
T ss_dssp EEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTT-
T ss_pred eeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcC-
Confidence 457899999986 689999999995 479999999999988766655 789999999999999884
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 002623 457 YISGRFLPDKAIDLVDEAA 475 (899)
Q Consensus 457 ~i~~~~~p~~a~~lld~a~ 475 (899)
..|.-|..++..+-
T Consensus 213 -----GtPRiAnrll~rvr 226 (233)
T PF05496_consen 213 -----GTPRIANRLLRRVR 226 (233)
T ss_dssp -----TSHHHHHHHHHHHC
T ss_pred -----CChHHHHHHHHHHH
Confidence 57989988887654
No 30
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.6e-22 Score=216.19 Aligned_cols=251 Identities=25% Similarity=0.389 Sum_probs=177.4
Q ss_pred HhhccC-chhhhHHHhcCCChhhHHHHHHHHhcccccc--CCCCCcchHHHH---hhcccHHHHHhcCCCCCCcCchHHH
Q 002623 191 GFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQSVI--DQDPEGKYEALE---KYGKDLTAMASAGKLDPVIGRDDEI 264 (899)
Q Consensus 191 all~~~-~~~~~ll~~~gv~~~~l~~~i~~~~~~~~~~--~~~~~~~~~~l~---~~~~~l~~~~~~~~l~~iiG~~~~i 264 (899)
++..++ +...+.+..+.|..+++..++..+.+..+-. ...|...|..+. ..-..|.. .-+.|+.-.+
T Consensus 463 ~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~----aI~~PiK~pd--- 535 (802)
T KOG0733|consen 463 AILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNM----AILAPIKRPD--- 535 (802)
T ss_pred HHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHH----HHhhhccCHH---
Confidence 455444 4446778888999999999998876543211 123555544332 22122221 1222322222
Q ss_pred HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHH
Q 002623 265 RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT 344 (899)
Q Consensus 265 ~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~ 344 (899)
+.+.+.-..+.++||+||||||||.||+++|++. +..|+++--.++. .+|+|+.|..++.+|..++
T Consensus 536 --~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 536 --LFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRAR 601 (802)
T ss_pred --HHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhh
Confidence 2334445667899999999999999999999997 9999999999998 5699999999999999998
Q ss_pred hhCCCeEEEEccchhhccCCCCCch---HHHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eEE
Q 002623 345 ESEGQIILFIDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVY 414 (899)
Q Consensus 345 ~~~~~~IL~iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~ 414 (899)
.+ .|||+|+||+|.|.+.++.++. ..+.|-|+.-|+ +..|.+|+|||.++ -+||+++| ||+ .++
T Consensus 602 ~s-aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~Ly 675 (802)
T KOG0733|consen 602 AS-APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLY 675 (802)
T ss_pred cC-CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceee
Confidence 74 6999999999999988877643 345555555553 55899999999998 68999999 999 689
Q ss_pred ecCCCHHHHHHHHHHHHHHHhhhhCCCCCHH-HHHHHHHhcccccCCCCChhhHHHHHHHHH
Q 002623 415 VDQPNVEDTISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (899)
Q Consensus 415 ~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~-~l~~~~~ls~~~i~~~~~p~~a~~lld~a~ 475 (899)
|..|+.+++..||+.+.+. ++..++++ .++.++.... -+.|.......|+.+|.
T Consensus 676 V~lPn~~eR~~ILK~~tkn----~k~pl~~dVdl~eia~~~~---c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 676 VGLPNAEERVAILKTITKN----TKPPLSSDVDLDEIARNTK---CEGFTGADLAALVREAS 730 (802)
T ss_pred ecCCCHHHHHHHHHHHhcc----CCCCCCcccCHHHHhhccc---ccCCchhhHHHHHHHHH
Confidence 9999999999999999884 23333322 2445554432 01234445666666654
No 31
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.88 E-value=1.2e-21 Score=219.06 Aligned_cols=240 Identities=23% Similarity=0.321 Sum_probs=163.0
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcCC----C---CCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEE
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGL----S---DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR 712 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~----~---~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~ 712 (899)
...+...|.+.|+||+.+++.|..++....... . ....+.+++||+||||||||++|++||+.+ +.+|+.
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~ 138 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAI 138 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCcee
Confidence 345666777889999999999988874322212 1 112234579999999999999999999998 789999
Q ss_pred eccccchhhhhhhhhcCCCCCCcccccccchhHH-------HhhCCCeEEEEeCCCccCh--------------HHHHHH
Q 002623 713 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEV-------VRRRPYAVILFDEIEKAHS--------------DVFNVF 771 (899)
Q Consensus 713 i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~-------~~~~~~~vl~lDEid~l~~--------------~~~~~L 771 (899)
++|+.+.. .+|+|......+... +..+.++||||||||++++ .+|+.|
T Consensus 139 id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 139 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQAL 207 (412)
T ss_pred cchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHH
Confidence 99987633 346665444444333 3356789999999999975 399999
Q ss_pred HHhhcCCee--ecCCCceeeeCCEEEEEecCC---------Chhhhhcc-----CCCCCCCcch------HHHHHHHHH-
Q 002623 772 LQILDDGRV--TDSQGRTVSFTNTVIIMTSNV---------GSQYILNM-----DDETFPKETA------YETIKQRVM- 828 (899)
Q Consensus 772 l~~le~g~~--~~~~g~~~~~~~~iiI~ttN~---------~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~- 828 (899)
|++||.+.+ ++..|+..++.++++|.|+|. |.+.+... ..|+...... ...+.+.+.
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 999985543 344577777788888888888 32222111 1111111000 123333332
Q ss_pred HH-HHhcCChHHHhccceEEecCCCCHHHHHHHHHH----HHHHHHhhcccC--CCccCHHHHHHhhccccc
Q 002623 829 DA-ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL----QVSFSKVSWIYS--PWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 829 ~~-~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~----~l~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 893 (899)
+. .+..|.|+|++|+|.++.|.||+.+++.+|+.. .++++...+... ...++++++..++..++.
T Consensus 288 ~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~ 359 (412)
T PRK05342 288 EDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIE 359 (412)
T ss_pred HHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCC
Confidence 22 244589999999999999999999999999985 444444433333 357889998877775443
No 32
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.87 E-value=4.2e-20 Score=224.12 Aligned_cols=178 Identities=20% Similarity=0.279 Sum_probs=131.9
Q ss_pred CCcCchHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc--
Q 002623 256 PVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-- 324 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~~---------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-- 324 (899)
.++||+..++.+...+.+. +..++||+||||||||++|++||+.+ +.+++.+||+.+..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEKH 524 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhcc
Confidence 4899999999988877541 22357999999999999999999998 78899999988642
Q ss_pred --------cccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------
Q 002623 325 --------GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (899)
Q Consensus 325 --------~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------- 383 (899)
...|.|..+. ..+.++.+..+.+||||||++.+. .++++.|.+++++|
T Consensus 525 ~~~~lig~~~gyvg~~~~---~~l~~~~~~~p~~VvllDEieka~--------~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQG---GLLTEAVRKHPHCVLLLDEIEKAH--------PDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred cHHHHhcCCCCCcccchh---hHHHHHHHhCCCeEEEEechhhcC--------HHHHHHHHHhhccCeeecCCCcccCCC
Confidence 2335553221 122333334567899999999987 78999999999876
Q ss_pred CeEEEEecChhHH--Hh------------------hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhh---h-
Q 002623 384 ELRCIGATTLDEY--RK------------------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH---H- 438 (899)
Q Consensus 384 ~v~~I~at~~~~~--~~------------------~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~---~- 438 (899)
+..+|+|||...- .+ .....|+|.+||+ .|.|.+.+.++..+|++..++++... .
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3458888875310 00 0124689999998 78888889999999998887754422 2
Q ss_pred -CCCCCHHHHHHHHHhc
Q 002623 439 -GVRISDSALVEAAILS 454 (899)
Q Consensus 439 -~~~i~~~~l~~~~~ls 454 (899)
.+.+++++++.+++.+
T Consensus 674 ~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 674 IKLELTDDAKKYLAEKG 690 (731)
T ss_pred CeEEeCHHHHHHHHHhC
Confidence 3678999999998864
No 33
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9.3e-22 Score=205.14 Aligned_cols=192 Identities=26% Similarity=0.399 Sum_probs=155.5
Q ss_pred hccceeccchHHHHHHHHHH--------HHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc
Q 002623 647 LHKRVVGQDPAVKSVAEAIQ--------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~--------~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (899)
-+.+|-|.++.++.|.+++. ....|+.+|. .+|||||||||||.||+++|+.. +..|+++..|++
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK----GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSEl 221 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK----GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSEL 221 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHH
Confidence 46789999999999999984 2345777665 39999999999999999999988 899999999998
Q ss_pred hhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCce
Q 002623 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 719 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~ 787 (899)
. .+++|.-+..+ +.+++..+...++||||||||... .++|..++++|..-.-.|+
T Consensus 222 V-----qKYiGEGaRlV-----RelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~---- 287 (406)
T COG1222 222 V-----QKYIGEGARLV-----RELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP---- 287 (406)
T ss_pred H-----HHHhccchHHH-----HHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC----
Confidence 4 44566543332 577888888889999999999753 5689988888865322232
Q ss_pred eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHH
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQV 865 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l 865 (899)
..|+.||++||. .+.++|+|+ +|||..|.||.++.+...+|++...
T Consensus 288 --~~nvKVI~ATNR------------------------------~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 288 --RGNVKVIMATNR------------------------------PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred --CCCeEEEEecCC------------------------------ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 258999999999 788999999 8999999999999999999999999
Q ss_pred HHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 866 SFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 866 ~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
.+++. .+.....++|.+.+...|..+
T Consensus 336 rkM~l~~dvd~e~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 336 RKMNLADDVDLELLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred hhccCccCcCHHHHHHhcCCCchHHHHHHHHHH
Confidence 88764 333445788888888888764
No 34
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.87 E-value=3.1e-21 Score=211.53 Aligned_cols=213 Identities=17% Similarity=0.228 Sum_probs=175.6
Q ss_pred eeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCC
Q 002623 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730 (899)
Q Consensus 651 i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~ 730 (899)
++|++.+++.+...+........ ++||+|++||||+.+|++|+....+.+.||+.+||+.+.+....+.+||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~-------pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDR-------PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCC-------CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 57999999999999987653222 49999999999999999999998777899999999998766556788887
Q ss_pred CCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhcc
Q 002623 731 PPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (899)
Q Consensus 731 ~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~ 809 (899)
..+ +.|... .-.+.+..+.+|+||||||+.++.++|..|+.+|+++.+....+......++++|++||.....+..
T Consensus 74 ~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~- 150 (329)
T TIGR02974 74 EAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA- 150 (329)
T ss_pred ccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh-
Confidence 654 333221 1235567778899999999999999999999999999876555544455789999999985544332
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCC-CccCHHHHH
Q 002623 810 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSP-WHFNYEMLV 885 (899)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~-~~~~~~~l~ 885 (899)
.+.|+++|++||+. .|.+|||. .+|+..++++++.+++.+++... ..++++++.
T Consensus 151 ----------------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~ 208 (329)
T TIGR02974 151 ----------------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQARE 208 (329)
T ss_pred ----------------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHH
Confidence 67899999999965 79999998 78999999999999999888877 799999999
Q ss_pred Hhhccccccc
Q 002623 886 KFCYLAFTIR 895 (899)
Q Consensus 886 ~~~~~~~~~~ 895 (899)
.++.+.|+.+
T Consensus 209 ~L~~y~WPGN 218 (329)
T TIGR02974 209 QLLEYHWPGN 218 (329)
T ss_pred HHHhCCCCch
Confidence 9999999853
No 35
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.87 E-value=1.6e-19 Score=205.74 Aligned_cols=185 Identities=20% Similarity=0.296 Sum_probs=131.7
Q ss_pred cceeccchHHHHHHHHHHH-----HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhh
Q 002623 649 KRVVGQDPAVKSVAEAIQR-----SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~-----~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (899)
++|.|.+.+++.+...... ...|...|+ .+||+||||||||++|+++|..+ +.+|+.++++.+..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pk----GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~--- 297 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPR----GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG--- 297 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCc----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc---
Confidence 4566666666655543221 233444333 49999999999999999999999 88999999986532
Q ss_pred hhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccCh------------HHHHHHHHhhcCCeeecCCCceeeeC
Q 002623 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS------------DVFNVFLQILDDGRVTDSQGRTVSFT 791 (899)
Q Consensus 724 ~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~ 791 (899)
.++|..... .+.++...+...++||||||||++.. .+++.|++.|++. ..
T Consensus 298 --~~vGese~~-----l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~ 359 (489)
T CHL00195 298 --GIVGESESR-----MRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KS 359 (489)
T ss_pred --cccChHHHH-----HHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CC
Confidence 222322111 13445556677789999999997643 2556677777641 24
Q ss_pred CEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 792 ~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+++||+|||. ...++|+++ +|||.+|.++.|+.++..+|++.++.+..
T Consensus 360 ~V~vIaTTN~------------------------------~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~ 409 (489)
T CHL00195 360 PVFVVATANN------------------------------IDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR 409 (489)
T ss_pred ceEEEEecCC------------------------------hhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC
Confidence 6889999998 678899998 49999999999999999999999999864
Q ss_pred h---------hcccCCCccCHHHHHHhhccc
Q 002623 870 V---------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 870 ~---------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
. .+.....+|+...|...|..+
T Consensus 410 ~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 410 PKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred CCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 2 222234578888877777543
No 36
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.1e-21 Score=211.78 Aligned_cols=176 Identities=27% Similarity=0.419 Sum_probs=146.2
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEE
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~ 353 (899)
.+++.||||||||||||++|+++|.+. ++.|+++...++. ++|.|+.|..++++|+.++.. .|+|+|
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkgpEL~--sk~vGeSEr~ir~iF~kAR~~-aP~IiF 532 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKGPELF--SKYVGESERAIREVFRKARQV-APCIIF 532 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccCHHHH--HHhcCchHHHHHHHHHHHhhc-CCeEEe
Confidence 567889999999999999999999998 9999999999998 569999999999999999875 579999
Q ss_pred EccchhhccCCCCCch---HHHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHH
Q 002623 354 IDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDT 423 (899)
Q Consensus 354 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~ 423 (899)
+||||.+.+.+++++. ..+.+.|+.-|+ ..+|.+|+|||.++ .+|+++.| ||+ .|+|+.|+.+.+
T Consensus 533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD-----MIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh-----hcCHHHcCCcccceeEeecCccHHHH
Confidence 9999999988865433 334444444443 45899999999998 79999999 998 789999999999
Q ss_pred HHHHHHHHHHHhhhhCCCCCHH-HHHHHHHhcccccCCCCChhhHHHHHHHHHHhh
Q 002623 424 ISILRGLRERYELHHGVRISDS-ALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 424 ~~Il~~~~~~~~~~~~~~i~~~-~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~ 478 (899)
.+|++...+++. +++. .+..+++.+.+| .......++.+|+..+
T Consensus 608 ~~Ilk~~~kkmp------~~~~vdl~~La~~T~g~-----SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 608 LEILKQCAKKMP------FSEDVDLEELAQATEGY-----SGAEIVAVCQEAALLA 652 (693)
T ss_pred HHHHHHHHhcCC------CCccccHHHHHHHhccC-----ChHHHHHHHHHHHHHH
Confidence 999998887643 3333 466777777665 5568888999988654
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.6e-20 Score=203.03 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=161.1
Q ss_pred hcCCCCCCcCchH---HHHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE
Q 002623 250 SAGKLDPVIGRDD---EIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (899)
Q Consensus 250 ~~~~l~~iiG~~~---~i~~~~~~l~~---------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (899)
...+|+++.|.|+ +++.+++.|+. +-++.+||+||||||||.||+++|.+. +.+|+..
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~ 368 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYA 368 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEec
Confidence 3557999999987 77888887754 345789999999999999999999997 9999988
Q ss_pred EcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhh---c----CCCeEEEEe
Q 002623 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML---G----RGELRCIGA 390 (899)
Q Consensus 318 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l---~----~~~v~~I~a 390 (899)
.-+++. -.|+|.-..+++++|..++.. .|||+||||||.+-+.+.......+...|.++| + +..|++|||
T Consensus 369 sGSEFd--Em~VGvGArRVRdLF~aAk~~-APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 369 SGSEFD--EMFVGVGARRVRDLFAAAKAR-APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred cccchh--hhhhcccHHHHHHHHHHHHhc-CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 777765 348888889999999999875 599999999999988776654333444455554 2 348999999
Q ss_pred cChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhH
Q 002623 391 TTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (899)
Q Consensus 391 t~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a 467 (899)
||.++ .+|++|.| ||+ .|.|+.|+..-|.+||..++.+... .-+++..++ ++=+. .+.....
T Consensus 446 TNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~--~~~VD~~ii---ARGT~-----GFsGAdL 510 (752)
T KOG0734|consen 446 TNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL--DEDVDPKII---ARGTP-----GFSGADL 510 (752)
T ss_pred cCChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCc--ccCCCHhHh---ccCCC-----CCchHHH
Confidence 99998 79999999 999 8999999999999999999887543 333444443 33333 3456688
Q ss_pred HHHHHHHHHhhhhhc
Q 002623 468 IDLVDEAAAKLKMEI 482 (899)
Q Consensus 468 ~~lld~a~~~~~~~~ 482 (899)
..++..|+-++....
T Consensus 511 aNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 511 ANLVNQAALKAAVDG 525 (752)
T ss_pred HHHHHHHHHHHHhcC
Confidence 889999887776543
No 38
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-20 Score=186.11 Aligned_cols=191 Identities=25% Similarity=0.410 Sum_probs=149.6
Q ss_pred ccceeccchHHHHHHHHHHH--------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 648 HKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
..++.|.+-.++.+++++.. ..-|+.+|+ .+|+|||||||||++|+++|+.. ...|+++..++|.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidppr----gvllygppg~gktml~kava~~t---~a~firvvgsefv 226 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPR----GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV 226 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCc----ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH
Confidence 46788888888889888742 133566554 39999999999999999999987 6789999999984
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCcc-----------ChHHHHHHHHhhcCCeeecCCCcee
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
.+++|.-|..+ +.++...+++.++|+||||||.. +.++|..|+.++..-.-.|
T Consensus 227 -----qkylgegprmv-----rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd------ 290 (408)
T KOG0727|consen 227 -----QKYLGEGPRMV-----RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD------ 290 (408)
T ss_pred -----HHHhccCcHHH-----HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC------
Confidence 45566655443 56788888888999999999974 4668888888775421111
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS 866 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~ 866 (899)
...|+.+|++||. ...++|+|+ +|+|..|.||.++..+.+-++.....
T Consensus 291 q~~nvkvimatnr------------------------------adtldpallrpgrldrkiefplpdrrqkrlvf~tits 340 (408)
T KOG0727|consen 291 QTTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITS 340 (408)
T ss_pred cccceEEEEecCc------------------------------ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhh
Confidence 2258999999999 677888888 89999999999999998888888877
Q ss_pred HHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 867 FSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 867 ~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
+++. .+...+.+++...++.+|+.+
T Consensus 341 km~ls~~vdle~~v~rpdkis~adi~aicqea 372 (408)
T KOG0727|consen 341 KMNLSDEVDLEDLVARPDKISGADINAICQEA 372 (408)
T ss_pred cccCCcccCHHHHhcCccccchhhHHHHHHHH
Confidence 7654 344456788888999999865
No 39
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.85 E-value=5.4e-19 Score=216.82 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=138.9
Q ss_pred CCCcCchHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc-
Q 002623 255 DPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA- 324 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l~~~---------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~- 324 (899)
..++||+..++.+...+.+. +..++||+||||||||++|++||+.+... +..++.+|++.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhcccc
Confidence 45999999999998877431 12357999999999999999999998432 45789999887631
Q ss_pred ---------cccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC------------
Q 002623 325 ---------GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 383 (899)
Q Consensus 325 ---------~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------ 383 (899)
...|.|..+. ..+...+ ...+.+|++|||+|.+. .++++.|+++++.|
T Consensus 582 ~~~~~l~g~~~gyvg~~~~--~~l~~~~-~~~p~~VvllDeieka~--------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNEG--GQLTEAV-RKKPYTVVLFDEIEKAH--------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCcc--chHHHHH-HhCCCeEEEECChhhCC--------HHHHHHHHHHhccCceecCCCcEEec
Confidence 2235543221 1222333 33456899999999987 78999999999875
Q ss_pred -CeEEEEecChhHH-----------------------Hh---------hhccCHHHHccCc-eEEecCCCHHHHHHHHHH
Q 002623 384 -ELRCIGATTLDEY-----------------------RK---------YIEKDPALERRFQ-QVYVDQPNVEDTISILRG 429 (899)
Q Consensus 384 -~v~~I~at~~~~~-----------------------~~---------~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~ 429 (899)
+..+|+|||...- .. .....|+|.+|++ .|.|.+.+.++..+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 4568888874210 00 0013589999996 778888999999999987
Q ss_pred HHHHHhh---hh--CCCCCHHHHHHHHHhc-ccccCCCCChhhHHHHHHHHHH
Q 002623 430 LRERYEL---HH--GVRISDSALVEAAILS-DRYISGRFLPDKAIDLVDEAAA 476 (899)
Q Consensus 430 ~~~~~~~---~~--~~~i~~~~l~~~~~ls-~~~i~~~~~p~~a~~lld~a~~ 476 (899)
.+..+.. .. .+.+++++.+.+++.+ +.-...|.+.......+....+
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 7765432 12 4678999999998863 2122344444444444443333
No 40
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-19 Score=189.94 Aligned_cols=198 Identities=22% Similarity=0.359 Sum_probs=149.9
Q ss_pred CCCCCCcCchHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 252 GKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
-+.++|.|.++..+-+-+.. .+++-+.+|++||||||||.||+++|-++ +..|+.+..
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSs 278 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSS 278 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEech
Confidence 36778999887665555432 34666899999999999999999999998 889998887
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCch----HHHHHHHhhhhc-------CCC-eEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGA----MDAGNLLKPMLG-------RGE-LRC 387 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~----~~~~~~L~~~l~-------~~~-v~~ 387 (899)
+.+. ++|+|+.|..++-+|+-++.. .|.++||||||.|...+++.+. ..+.+-|+..|+ ..+ |.|
T Consensus 279 stlt--SKwRGeSEKlvRlLFemARfy-APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 279 STLT--SKWRGESEKLVRLLFEMARFY-APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred hhhh--hhhccchHHHHHHHHHHHHHh-CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 7777 679999999999999888765 5899999999999987776533 333333444443 223 555
Q ss_pred EEecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 388 IGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
.++||.+ | ++|.+|+|||. .|+|+.|+.+.+..+++..+...+.. ++-.++.+++.+.+| ..+.
T Consensus 356 LAATN~P-W----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----~~~~~~~lae~~eGy-----SGaD 420 (491)
T KOG0738|consen 356 LAATNFP-W----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----DPVNLEDLAERSEGY-----SGAD 420 (491)
T ss_pred EeccCCC-c----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----CCccHHHHHHHhcCC-----ChHH
Confidence 6666665 4 99999999998 89999999999999999887753332 333456678888776 4456
Q ss_pred HHHHHHHHHHh
Q 002623 467 AIDLVDEAAAK 477 (899)
Q Consensus 467 a~~lld~a~~~ 477 (899)
...++.+|...
T Consensus 421 I~nvCreAsm~ 431 (491)
T KOG0738|consen 421 ITNVCREASMM 431 (491)
T ss_pred HHHHHHHHHHH
Confidence 77777777644
No 41
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.84 E-value=1.1e-19 Score=199.76 Aligned_cols=216 Identities=15% Similarity=0.199 Sum_probs=174.1
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
++.++|.+..++.+.+.+........ ++||+|++||||+++|++|+......+.+|+.+||+.+.+......+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~-------pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~l 77 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDK-------PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCC-------CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHH
Confidence 45799999999999999987653222 49999999999999999999888767789999999998765445678
Q ss_pred cCCCCCC-cccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 728 IGAPPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 728 ~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
||...+. .|... ...+.+..+.+|+||||||+.+++.+|..|+.+|+++.+....+......+++||+||+.....+
T Consensus 78 fg~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l 155 (326)
T PRK11608 78 FGHEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM 155 (326)
T ss_pred ccccccccCCccc--ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHH
Confidence 8876542 23221 11345567788999999999999999999999999987665444333345899999999855443
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCC-CccCHH
Q 002623 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSP-WHFNYE 882 (899)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~-~~~~~~ 882 (899)
.. .+.|+++|++||.. .|.+|||. .+|+..++++++.+++.+++... ..++++
T Consensus 156 ~~-----------------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~ 212 (326)
T PRK11608 156 VA-----------------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTER 212 (326)
T ss_pred HH-----------------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 32 67899999999954 89999998 58999999999999998888774 689999
Q ss_pred HHHHhhccccccc
Q 002623 883 MLVKFCYLAFTIR 895 (899)
Q Consensus 883 ~l~~~~~~~~~~~ 895 (899)
++..++.+.|+.+
T Consensus 213 al~~L~~y~WPGN 225 (326)
T PRK11608 213 ARETLLNYRWPGN 225 (326)
T ss_pred HHHHHHhCCCCcH
Confidence 9999999999853
No 42
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.83 E-value=1.8e-18 Score=206.67 Aligned_cols=200 Identities=20% Similarity=0.270 Sum_probs=140.6
Q ss_pred CCcCchHHHHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc--
Q 002623 256 PVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA-- 324 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~---------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-- 324 (899)
.++||+..++.+.+.+.+ ++..++||+||||||||++|+.+|+.+ +.+++.+||+.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 389999999999988753 233568999999999999999999998 78899999987642
Q ss_pred ------c--ccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------
Q 002623 325 ------G--AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (899)
Q Consensus 325 ------~--~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------- 383 (899)
| ..|.|... ...+.++....+.+||||||+|.+. .++++.|+++|++|
T Consensus 529 ~~~~LiG~~~gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~--------~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred cHHHHcCCCCCcccccc---cchHHHHHHhCCCcEEEeccHhhhh--------HHHHHHHHHHHhcCeeecCCCceecCC
Confidence 1 12444211 1223333334457899999999997 78999999999865
Q ss_pred CeEEEEecChhHH---H-----------------hhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhh-----
Q 002623 384 ELRCIGATTLDEY---R-----------------KYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELH----- 437 (899)
Q Consensus 384 ~v~~I~at~~~~~---~-----------------~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~----- 437 (899)
++.+|+|||...- . -...+.|+|.+|++ .|.|.+.+.++..+|+...+..+...
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4558999883210 0 00135699999998 78888999999999998776654432
Q ss_pred hCCCCCHHHHHHHHHhcc-cccCCCCChhhHHHHHHHHHH
Q 002623 438 HGVRISDSALVEAAILSD-RYISGRFLPDKAIDLVDEAAA 476 (899)
Q Consensus 438 ~~~~i~~~~l~~~~~ls~-~~i~~~~~p~~a~~lld~a~~ 476 (899)
..+.+++++++++++..- .-...|.+.......+....+
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 346789999999987542 222345554444444444333
No 43
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.83 E-value=1.1e-19 Score=214.03 Aligned_cols=215 Identities=17% Similarity=0.257 Sum_probs=176.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+..++|++.+++.+.+.+........ ++||+|++||||+++|++|+....+.+.+|+.+||+.+.+....+.+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~-------pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNS-------TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCC-------CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHH
Confidence 46799999999999999987653222 49999999999999999999998877889999999999776666788
Q ss_pred cCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 728 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
||...+ +.|... .-.+.+..+.+|+||||||+.+++++|..|+++|+++.+....+......++++|+||+......
T Consensus 268 fg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~ 345 (534)
T TIGR01817 268 FGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345 (534)
T ss_pred cCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH
Confidence 998654 223211 11234556678999999999999999999999999998775554444456899999999865433
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHH
Q 002623 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEM 883 (899)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~ 883 (899)
.. .+.|+++|++||+. .|.+|||. .+|+..++++++.+++.+++.. ..+++++
T Consensus 346 ~~-----------------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~-~~~s~~a 401 (534)
T TIGR01817 346 VA-----------------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRP-LTITPSA 401 (534)
T ss_pred HH-----------------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCC-CCCCHHH
Confidence 22 67899999999966 79999998 7999999999999999888877 7899999
Q ss_pred HHHhhccccccc
Q 002623 884 LVKFCYLAFTIR 895 (899)
Q Consensus 884 l~~~~~~~~~~~ 895 (899)
+..++.+.|+.+
T Consensus 402 ~~~L~~~~WPGN 413 (534)
T TIGR01817 402 IRVLMSCKWPGN 413 (534)
T ss_pred HHHHHhCCCCCh
Confidence 999999999853
No 44
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.83 E-value=2.3e-19 Score=209.17 Aligned_cols=217 Identities=17% Similarity=0.229 Sum_probs=177.5
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
-+++++|.+.+++.+...+++...... ++||+|++||||+++|++++........||+.+||+.+.+....+.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~-------pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~e 274 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDA-------PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESE 274 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCC-------CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHH
Confidence 467899999999999988876544222 4999999999999999999998887788999999999977666678
Q ss_pred hcCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhh
Q 002623 727 LIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQY 805 (899)
Q Consensus 727 l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~ 805 (899)
+||..++ +.+...+ ..+.+..+.+|+||||||+.+++..|..|++++++|.++...+......+++||+||+.....
T Consensus 275 lFG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~ 352 (520)
T PRK10820 275 LFGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVE 352 (520)
T ss_pred hcCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHH
Confidence 8987654 3332222 125566778899999999999999999999999998776544433344689999999986554
Q ss_pred hhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHH
Q 002623 806 ILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYE 882 (899)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~ 882 (899)
+.. .+.|+++|++|+.. .|.+|||. .+|+..+++.++.+++.+++.....++++
T Consensus 353 l~~-----------------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 353 LVQ-----------------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred HHH-----------------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 433 67899999999865 79999998 57999999999999999988887899999
Q ss_pred HHHHhhccccccc
Q 002623 883 MLVKFCYLAFTIR 895 (899)
Q Consensus 883 ~l~~~~~~~~~~~ 895 (899)
++..++.+.|+.+
T Consensus 410 a~~~L~~y~WPGN 422 (520)
T PRK10820 410 LNTVLTRYGWPGN 422 (520)
T ss_pred HHHHHhcCCCCCH
Confidence 9999999999753
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=9e-20 Score=182.30 Aligned_cols=169 Identities=15% Similarity=0.328 Sum_probs=116.4
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
-+++++||++.+..+...++.++.. +.++.|++||||||+|||++|+.||+.+ +.+|...+.+.+....
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r----~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~~---- 90 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR----GEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKAG---- 90 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT----TS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SCH----
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc----CCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhHH----
Confidence 3678999999999988887765432 2334589999999999999999999999 7778766665442221
Q ss_pred hcCCCCCCcccccccchhHHHh-hCCCeEEEEeCCCccChHHHHHHHHhhcCCeee--cCCC---c--eeeeCCEEEEEe
Q 002623 727 LIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVT--DSQG---R--TVSFTNTVIIMT 798 (899)
Q Consensus 727 l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~--~~~g---~--~~~~~~~iiI~t 798 (899)
.+...+. -.++.||||||||++++.+|+.|+.+||+|.+. .+.| + .++.+++.+|.+
T Consensus 91 ---------------dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 91 ---------------DLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ---------------HHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ---------------HHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 2222232 234569999999999999999999999999864 2333 2 455689999999
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhh
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS 871 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~ 871 (899)
|+. .+.++++|++||..+..+..|+.+++.+|+.+....++.+
T Consensus 156 TTr------------------------------~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~ 198 (233)
T PF05496_consen 156 TTR------------------------------AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE 198 (233)
T ss_dssp ESS------------------------------GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E
T ss_pred ecc------------------------------ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC
Confidence 998 6889999999998888999999999999999877766643
No 46
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.83 E-value=2.3e-19 Score=209.27 Aligned_cols=216 Identities=17% Similarity=0.243 Sum_probs=177.4
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
...++|++..++.+...+........ ++||+|++||||+.+|++|+......+.+|+.+||+.+.+....+.+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~-------pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDL-------NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCC-------cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 35799999999999999987654322 49999999999999999999998877889999999999766556788
Q ss_pred cCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 728 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
||+..+ +.|... .-.+.+..+.+|+||||||+.+++++|..|+++|+++.+....+......++++|++||......
T Consensus 259 fG~~~g~~~ga~~--~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~ 336 (509)
T PRK05022 259 FGHVKGAFTGAIS--NRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE 336 (509)
T ss_pred cCccccccCCCcc--cCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHH
Confidence 987654 333221 11234567788999999999999999999999999988765444444446899999999865443
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHH
Q 002623 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEM 883 (899)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~ 883 (899)
.. .+.|+++|++|+.. .|.+|||. .+|+..++++++.+++.+++.....+++++
T Consensus 337 ~~-----------------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a 393 (509)
T PRK05022 337 VR-----------------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAA 393 (509)
T ss_pred HH-----------------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 22 67899999999966 69999998 689999999999999999988888999999
Q ss_pred HHHhhccccccc
Q 002623 884 LVKFCYLAFTIR 895 (899)
Q Consensus 884 l~~~~~~~~~~~ 895 (899)
+..++.+.|+.+
T Consensus 394 ~~~L~~y~WPGN 405 (509)
T PRK05022 394 QAALLAYDWPGN 405 (509)
T ss_pred HHHHHhCCCCCc
Confidence 999999999853
No 47
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.82 E-value=2.8e-19 Score=205.75 Aligned_cols=214 Identities=17% Similarity=0.235 Sum_probs=170.4
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHH--------hcCCCCceEEeccccch
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASY--------MFNTEEALVRIDMSEYM 719 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~--------l~~~~~~~~~i~~~~~~ 719 (899)
+.+++|++.+++.+...+........ ++||+|++||||+.+|++|++. ..+.+.||+.+||+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~-------pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~ 290 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSA-------AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA 290 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCC-------cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC
Confidence 45699999999999999987544322 4999999999999999999998 66677899999999998
Q ss_pred hhhhhhhhcCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEe
Q 002623 720 EKHAVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (899)
Q Consensus 720 ~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 798 (899)
+....+.+||...| ++|...+ .-.+.+..+.+|+||||||+.+++..|..|+++|+++.+....+...-..++++|++
T Consensus 291 e~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaa 369 (538)
T PRK15424 291 ESLLEAELFGYEEGAFTGSRRG-GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISA 369 (538)
T ss_pred hhhHHHHhcCCccccccCcccc-ccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEe
Confidence 77667889998665 3333211 122566778899999999999999999999999999988765554444568999999
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccC
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYS 875 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~ 875 (899)
||.....+.. .+.|+++|++|++. .|.+|||. .+|+..++++++.++...+...
T Consensus 370 t~~~L~~~v~-----------------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~ 426 (538)
T PRK15424 370 THCDLEEDVR-----------------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP 426 (538)
T ss_pred cCCCHHHHHh-----------------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC
Confidence 9986544433 67899999999965 79999998 6899999999999976554432
Q ss_pred CCccCHHH-------HHHhhccccccc
Q 002623 876 PWHFNYEM-------LVKFCYLAFTIR 895 (899)
Q Consensus 876 ~~~~~~~~-------l~~~~~~~~~~~ 895 (899)
+++++ +..++.+.|+.+
T Consensus 427 ---~~~~a~~~~~~a~~~L~~y~WPGN 450 (538)
T PRK15424 427 ---FSAALRQGLQQCETLLLHYDWPGN 450 (538)
T ss_pred ---CCHHHHHhhHHHHHHHHhCCCCch
Confidence 55554 488999999853
No 48
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.82 E-value=3e-19 Score=205.99 Aligned_cols=214 Identities=14% Similarity=0.221 Sum_probs=174.1
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+++++|++.+++.+...++....... ++||+|++||||+.+|++|+....+.+.||+.+||+.+.+....+.+
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~-------pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDA-------TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCC-------cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHh
Confidence 45699999999999999987544322 59999999999999999999988778899999999999876667789
Q ss_pred cCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 728 IGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 728 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
||...| ++|...+ .-.+.+..+.+|+||||||+.+++.+|..|+++|+++.+....+......++++|++||......
T Consensus 284 FG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~ 362 (526)
T TIGR02329 284 FGYEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTA 362 (526)
T ss_pred cCCccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHH
Confidence 998665 3333211 12356677788999999999999999999999999998766554444456899999999865443
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHH
Q 002623 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEM 883 (899)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~ 883 (899)
.. .+.|+++|++|++. .|.+|||. .+|+..++++++.++..++. .++++++
T Consensus 363 v~-----------------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~---~~~~~~a 416 (526)
T TIGR02329 363 VQ-----------------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALR---LPDSEAA 416 (526)
T ss_pred hh-----------------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcC---CCCCHHH
Confidence 33 67899999999965 79999998 68999999999999887653 3588999
Q ss_pred HHH-------hhccccccc
Q 002623 884 LVK-------FCYLAFTIR 895 (899)
Q Consensus 884 l~~-------~~~~~~~~~ 895 (899)
+.. ++.++|+.+
T Consensus 417 ~~~~~~~~~~L~~y~WPGN 435 (526)
T TIGR02329 417 AQVLAGVADPLQRYPWPGN 435 (526)
T ss_pred HHHhHHHHHHHHhCCCCch
Confidence 888 999999853
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.6e-19 Score=201.68 Aligned_cols=196 Identities=26% Similarity=0.427 Sum_probs=148.1
Q ss_pred CCCCCcCchHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 253 KLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
..+||=|-++.-..+++.+ .-+++.++|||||||||||.+|+++|-++ +..|+++.-.
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGP 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCH
Confidence 3455666665444444433 12446789999999999999999999999 8999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCc----hHH-HHHHHhhhhc------CCCeEEEE
Q 002623 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG----AMD-AGNLLKPMLG------RGELRCIG 389 (899)
Q Consensus 321 ~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~----~~~-~~~~L~~~l~------~~~v~~I~ 389 (899)
++. .+|+|+.|++++++|..+++ ..|||||+||+|.+.++++..| .+| +..-|+.-|+ ...|.+||
T Consensus 740 ELL--NMYVGqSE~NVR~VFerAR~-A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 740 ELL--NMYVGQSEENVREVFERARS-AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHH--HHHhcchHHHHHHHHHHhhc-cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 988 56999999999999999986 4699999999999998887653 233 2222333332 23799999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCC-CHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQP-NVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p-s~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~ 465 (899)
|||+++ -+||+|+| ||+ .+++.++ +.+....||+.+-.++....+++ +..+++.+.-- +..+
T Consensus 817 ATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp~~----~TGA 882 (953)
T KOG0736|consen 817 ATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCPPN----MTGA 882 (953)
T ss_pred cCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCCcC----Cchh
Confidence 999998 68999999 999 6888888 77888999999998876555553 45566666433 3444
Q ss_pred hHHHHHHHHH
Q 002623 466 KAIDLVDEAA 475 (899)
Q Consensus 466 ~a~~lld~a~ 475 (899)
+...++-.|.
T Consensus 883 DlYsLCSdA~ 892 (953)
T KOG0736|consen 883 DLYSLCSDAM 892 (953)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 50
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.82 E-value=1.1e-19 Score=198.32 Aligned_cols=215 Identities=16% Similarity=0.267 Sum_probs=178.0
Q ss_pred HhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC-CCCceEEeccccchhhhh
Q 002623 645 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-TEEALVRIDMSEYMEKHA 723 (899)
Q Consensus 645 ~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-~~~~~~~i~~~~~~~~~~ 723 (899)
...+..++|.+...+.+.+.++... |.+ . ++|+.|+|||||+.+|+.|+....+ ...|||.+||+.+.+...
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-----p~~-~-~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-----PSG-L-PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-----CCC-C-cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH
Confidence 3446789999999999999987621 211 1 5999999999999999999977766 689999999999999888
Q ss_pred hhhhcCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC
Q 002623 724 VSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (899)
Q Consensus 724 ~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~ 802 (899)
.+.+||+..| +.|...+. .+.+..+.+|+||+|||+.+++..|..|+++||+|.++.-.+......++++|++||..
T Consensus 147 ~~eLFG~~kGaftGa~~~k--~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 147 EAELFGHEKGAFTGAQGGK--AGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTED 224 (403)
T ss_pred HHHHhccccceeecccCCc--CchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccC
Confidence 8889999887 66744333 47888999999999999999999999999999999988655555666799999999984
Q ss_pred hhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHh-ccceEEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCcc
Q 002623 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN-RVDEYIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHF 879 (899)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~-R~d~~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~ 879 (899)
.... +. .+ ..|++ |+..+|.+|||. .+|+..++++++..+..+++.+....
T Consensus 225 l~~~--------------------~~---~g---~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~ 278 (403)
T COG1221 225 LEEA--------------------VL---AG---ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVD 278 (403)
T ss_pred HHHH--------------------HH---hh---cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 3221 11 11 46777 556689999998 68999999999999999999998888
Q ss_pred CHHHHHHhhcccccc
Q 002623 880 NYEMLVKFCYLAFTI 894 (899)
Q Consensus 880 ~~~~l~~~~~~~~~~ 894 (899)
+++++..+..|+|+.
T Consensus 279 ~~~a~~~L~~y~~pG 293 (403)
T COG1221 279 SPEALRALLAYDWPG 293 (403)
T ss_pred CHHHHHHHHhCCCCC
Confidence 899999999999975
No 51
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.82 E-value=1.2e-19 Score=188.23 Aligned_cols=184 Identities=24% Similarity=0.361 Sum_probs=144.3
Q ss_pred ccHHHHHhcCCCCCCcCchHH------HHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE
Q 002623 243 KDLTAMASAGKLDPVIGRDDE------IRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~------i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (899)
.+|.+++||.++++.|||+.. ++.+++ ....++++|+||||||||+||+.|+..... ..+.|++
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ie---q~~ipSmIlWGppG~GKTtlArlia~tsk~-------~Syrfve 195 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIE---QNRIPSMILWGPPGTGKTTLARLIASTSKK-------HSYRFVE 195 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCcchHHHHHHH---cCCCCceEEecCCCCchHHHHHHHHhhcCC-------CceEEEE
Confidence 589999999999999998763 444444 467789999999999999999999987622 1345666
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHh----hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecC
Q 002623 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTE----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATT 392 (899)
Q Consensus 317 l~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~ 392 (899)
+. +..++. ..++++|+.+++ .....||||||||++. ...+..+++..++|.+.+|||||
T Consensus 196 lS--At~a~t-------~dvR~ife~aq~~~~l~krkTilFiDEiHRFN--------ksQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 196 LS--ATNAKT-------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN--------KSQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred Ee--ccccch-------HHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh--------hhhhhcccceeccCceEEEeccc
Confidence 54 333332 246677777765 2467899999999998 55677899999999999999999
Q ss_pred hhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhh---------CCCCCHHHHHHHHHhccc
Q 002623 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHH---------GVRISDSALVEAAILSDR 456 (899)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~---------~~~i~~~~l~~~~~ls~~ 456 (899)
.++. |.+..+|.+||..+.+++.+.++...||..-...+.... .+.+++.++++++.++++
T Consensus 259 ENPS---Fqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 259 ENPS---FQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred CCCc---cchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 9886 788999999999999999999999999976555333221 235788889999888876
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=4.6e-19 Score=198.22 Aligned_cols=204 Identities=19% Similarity=0.179 Sum_probs=160.0
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
.+|.+++||.+|+++||++..++.+...+......| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 678999999999999999999998888877766555 799999999999999999999976432110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++++|... ..| .+.++.+.+.+.. .++..|+||||+|.|. .+++|.|+..+++
T Consensus 86 ~g~~~dviEIdaas------~~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp 149 (484)
T PRK14956 86 KGISSDVLEIDAAS------NRG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPP 149 (484)
T ss_pred ccCCccceeechhh------ccc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCC
Confidence 0112345554321 111 2234555554442 2345699999999997 6788999999987
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+++++|++||... .+.+++++||+.+.|..++.++..+.++.+++. +++.++++++..+++.+++.
T Consensus 150 ~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd----- 215 (484)
T PRK14956 150 AHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGS----- 215 (484)
T ss_pred CceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCh-----
Confidence 6899999998865 688999999999999999999999999888876 78999999999999999763
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
+.+|+.++|.+.+.
T Consensus 216 -~RdAL~lLeq~i~~ 229 (484)
T PRK14956 216 -VRDMLSFMEQAIVF 229 (484)
T ss_pred -HHHHHHHHHHHHHh
Confidence 56899999987653
No 53
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.81 E-value=3.7e-19 Score=184.26 Aligned_cols=212 Identities=20% Similarity=0.264 Sum_probs=185.9
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
-|+.+++.+..++.+....++...-.. ++|+.|++||||..+|++-+..+.+...||+.+||..+.+....+.
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDA-------PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDA-------PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESE 274 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCC-------CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHH
Confidence 467789999999988887776554332 3999999999999999999999999999999999999999988999
Q ss_pred hcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 727 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 727 l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
+||..+|..|+ .++++.+.+|.+|+|||..++|..|..||+++.+|.++.-.+..-.+-++++|+||......+
T Consensus 275 lFG~apg~~gk------~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~l 348 (511)
T COG3283 275 LFGHAPGDEGK------KGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVEL 348 (511)
T ss_pred HhcCCCCCCCc------cchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHH
Confidence 99998874332 267788889999999999999999999999999999987666666678999999999866655
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHH
Q 002623 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEM 883 (899)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~ 883 (899)
.+ ++.|+.++++|++. .+.+|||. .+|+.-+.+.++.+...+++....+++++.
T Consensus 349 v~-----------------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~ 405 (511)
T COG3283 349 VQ-----------------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADL 405 (511)
T ss_pred Hh-----------------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHH
Confidence 44 78999999999977 68999998 689999999999999999999999999999
Q ss_pred HHHhhcccccc
Q 002623 884 LVKFCYLAFTI 894 (899)
Q Consensus 884 l~~~~~~~~~~ 894 (899)
+..+.+|.|+.
T Consensus 406 ~~~L~~y~WpG 416 (511)
T COG3283 406 LTVLTRYAWPG 416 (511)
T ss_pred HHHHHHcCCCc
Confidence 99999999985
No 54
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.81 E-value=2.9e-19 Score=182.94 Aligned_cols=206 Identities=20% Similarity=0.229 Sum_probs=163.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 322 (899)
..|+++|+|.+|++++||+..++.+...+.++...|.|||||||||||+.|+++|+.+.+ +.+..+.+.+++.+..
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDE 99 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhccccc
Confidence 458999999999999999999999999998888899999999999999999999999966 3345677888876664
Q ss_pred cccccccchHHHHHHHHHHHHHh-----hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhH
Q 002623 323 IAGAKYRGEFEDRLKAVLKEVTE-----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDE 395 (899)
Q Consensus 323 ~~~~~~~g~~~~~l~~l~~~~~~-----~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~ 395 (899)
.+-+ ...+-.....++...... ....-|++|||+|.+. .++++.|++.|++ ...++|..||+..
T Consensus 100 rGis-vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------sdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 100 RGIS-VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------SDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred cccc-chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh--------HHHHHHHHHHHhccccceEEEEEcCChh
Confidence 3222 111111111111111100 0123699999999998 8999999999985 5889999999987
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHH
Q 002623 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (899)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~ 475 (899)
.+.+.+.+||+.+.|++...+.....|+.++.+ +++.+++++++.+++.|++-+ .+|+..++.+.
T Consensus 171 -----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdL------R~Ait~Lqsls 235 (346)
T KOG0989|consen 171 -----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDL------RRAITTLQSLS 235 (346)
T ss_pred -----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHhh
Confidence 788999999999999999999999999999988 899999999999999998753 25666666654
Q ss_pred H
Q 002623 476 A 476 (899)
Q Consensus 476 ~ 476 (899)
-
T Consensus 236 ~ 236 (346)
T KOG0989|consen 236 L 236 (346)
T ss_pred c
Confidence 3
No 55
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.81 E-value=3.3e-19 Score=175.96 Aligned_cols=163 Identities=20% Similarity=0.355 Sum_probs=126.9
Q ss_pred eeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCC
Q 002623 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730 (899)
Q Consensus 651 i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~ 730 (899)
++|.+.+++.+.+.++....... ++||+|++||||+.+|++|++...+.+.||+.+||+.+........+||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~-------pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDL-------PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS--------EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCC-------CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 57999999999999887643221 59999999999999999999999888899999999999877777889998
Q ss_pred CCCC-cccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhcc
Q 002623 731 PPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (899)
Q Consensus 731 ~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~ 809 (899)
..+. .|... .-.+.+..+.+|+||||||+.+++.+|..|+++|+++.+....+......+++||+|||.+...+..
T Consensus 74 ~~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~- 150 (168)
T PF00158_consen 74 EKGAFTGARS--DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE- 150 (168)
T ss_dssp CSSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH-
T ss_pred cccccccccc--ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH-
Confidence 7652 23222 2338899999999999999999999999999999999887665555556799999999996555443
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce
Q 002623 810 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE 845 (899)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~ 845 (899)
.+.|+++|++|+..
T Consensus 151 ----------------------~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 151 ----------------------QGRFREDLYYRLNV 164 (168)
T ss_dssp ----------------------TTSS-HHHHHHHTT
T ss_pred ----------------------cCCChHHHHHHhce
Confidence 78999999999954
No 56
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.80 E-value=1.3e-18 Score=198.33 Aligned_cols=201 Identities=19% Similarity=0.270 Sum_probs=150.4
Q ss_pred CCCCCCcCchHHHHHHHHH---h-------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccc
Q 002623 252 GKLDPVIGRDDEIRRCIQI---L-------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~---l-------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (899)
.+|+++.|.+...+.+.+. + ....++++||+||||||||.+|+++|..+ +.+++.++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~ 294 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGK 294 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHH
Confidence 3577788876533333221 1 12456789999999999999999999998 99999999998
Q ss_pred ccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC----chHHHHHHHhhhhc--CCCeEEEEecChhH
Q 002623 322 LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLG--RGELRCIGATTLDE 395 (899)
Q Consensus 322 l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~--~~~v~~I~at~~~~ 395 (899)
+.++ |.|+.+.+++++|..+... .||||||||||.++...... ....+.+.|...++ +..+.+|+|||...
T Consensus 295 l~~~--~vGese~~l~~~f~~A~~~-~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 LFGG--IVGESESRMRQMIRIAEAL-SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hccc--ccChHHHHHHHHHHHHHhc-CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 8854 8999999999999988754 68999999999988643322 12334444445554 45789999999887
Q ss_pred HHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHH
Q 002623 396 YRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 396 ~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld 472 (899)
.+||++.| ||+ .++|+.|+.+++.+|++.++.++.. ....+..+..+++.+.+| .+.....++.
T Consensus 372 -----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---~~~~~~dl~~La~~T~Gf-----SGAdI~~lv~ 438 (489)
T CHL00195 372 -----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---KSWKKYDIKKLSKLSNKF-----SGAEIEQSII 438 (489)
T ss_pred -----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC---CcccccCHHHHHhhcCCC-----CHHHHHHHHH
Confidence 79999998 998 7899999999999999998887421 122345567788888765 5556677777
Q ss_pred HHHHhh
Q 002623 473 EAAAKL 478 (899)
Q Consensus 473 ~a~~~~ 478 (899)
+|+..+
T Consensus 439 eA~~~A 444 (489)
T CHL00195 439 EAMYIA 444 (489)
T ss_pred HHHHHH
Confidence 766443
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=2e-18 Score=199.20 Aligned_cols=204 Identities=21% Similarity=0.220 Sum_probs=158.9
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCccc--c----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA--L---------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~~--l---------- 309 (899)
..|.+||||.+|+++|||+..++.+...+...+..|. ||+||+|||||++++.|++.+.+...... .
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~ 83 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHh
Confidence 3588999999999999999999999998877666665 89999999999999999999976321100 0
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 310 --~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
....++++|..+ .+| .+.++.+++.+.. .++..|+||||+|.|. ...+|.|++.||+
T Consensus 84 ~G~h~DviEIDAas------~rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------~~A~NALLKtLEEPP 147 (830)
T PRK07003 84 EGRFVDYVEMDAAS------NRG--VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------NHAFNAMLKTLEEPP 147 (830)
T ss_pred cCCCceEEEecccc------ccc--HHHHHHHHHHHHhccccCCceEEEEeChhhCC--------HHHHHHHHHHHHhcC
Confidence 012456665432 111 2234555555442 1345699999999997 6678888889986
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
.+++||++||... .+.+.+++||+.+.|..++.+++.+.|+.+++. +++.++++++..+++.+++.
T Consensus 148 ~~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gs----- 213 (830)
T PRK07003 148 PHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGS----- 213 (830)
T ss_pred CCeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC-----
Confidence 4789999998875 678999999999999999999999999988887 78999999999999999764
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
..+++.+++.+...
T Consensus 214 -mRdALsLLdQAia~ 227 (830)
T PRK07003 214 -MRDALSLTDQAIAY 227 (830)
T ss_pred -HHHHHHHHHHHHHh
Confidence 34788898887754
No 58
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=2.3e-18 Score=184.14 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=153.6
Q ss_pred CCCCCcCchHHHHHHHHHh------hc---------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE
Q 002623 253 KLDPVIGRDDEIRRCIQIL------SR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l------~~---------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (899)
.+++++|.++..+++.++. .. ....|+||+||||||||++|+.+|+.+..... +...+++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 3566889887544443321 00 13357899999999999999999998865321 234578889
Q ss_pred EcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhH
Q 002623 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDE 395 (899)
Q Consensus 318 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~ 395 (899)
+++++.+ .|.|+....+.++|..+ .++||||||+|.|...++.....++.+.|.+.++. +++++|++++..+
T Consensus 81 ~~~~l~~--~~~g~~~~~~~~~~~~a----~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 81 ERADLVG--EYIGHTAQKTREVIKKA----LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred cHHHhhh--hhccchHHHHHHHHHhc----cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 9888874 47888888888887765 35699999999997533322335667778887764 4678888887766
Q ss_pred HHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccC----CCCChhhHHHH
Q 002623 396 YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS----GRFLPDKAIDL 470 (899)
Q Consensus 396 ~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~----~~~~p~~a~~l 470 (899)
...+..++|+|++||. .|.|+.++.+++.+|++.++.. .++.++++++..+.+...+... ...-...+..+
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 6666788999999996 7999999999999999988876 5778999999888776544321 11223356666
Q ss_pred HHHHHHhh
Q 002623 471 VDEAAAKL 478 (899)
Q Consensus 471 ld~a~~~~ 478 (899)
++.|..+.
T Consensus 231 ~e~a~~~~ 238 (261)
T TIGR02881 231 IEKAIRRQ 238 (261)
T ss_pred HHHHHHHH
Confidence 76666544
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.80 E-value=3.9e-17 Score=200.95 Aligned_cols=182 Identities=21% Similarity=0.299 Sum_probs=129.4
Q ss_pred CCCcCchHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccc
Q 002623 255 DPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG 325 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l~~~---------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~ 325 (899)
..++||+..++.+...+.+. +..++||+||||||||++|++||+.+.. .+.+++.+||+.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~-------~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD-------DEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC-------CCCcEEEEechhhccc
Confidence 45999999999999988652 2245899999999999999999999843 2568899998876321
Q ss_pred ----------ccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC------------
Q 002623 326 ----------AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 383 (899)
Q Consensus 326 ----------~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------ 383 (899)
..|.|..+. ..+.+.....+.+|||||||+.+. .++++.|.++++.|
T Consensus 638 ~~~~~l~g~~~g~~g~~~~---g~l~~~v~~~p~~vlllDeieka~--------~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEG---GQLTEAVRRKPYSVVLFDEVEKAH--------PDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCcccc---cHHHHHHHcCCCcEEEEeccccCC--------HHHHHHHHHHHhcCceecCCCeEEec
Confidence 123332111 122233333456799999999987 78999999999765
Q ss_pred -CeEEEEecChhHH--Hh------------------hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhh---hh
Q 002623 384 -ELRCIGATTLDEY--RK------------------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL---HH 438 (899)
Q Consensus 384 -~v~~I~at~~~~~--~~------------------~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~---~~ 438 (899)
+.++|+|||...- .+ .-...|.|..||+ .+.|.+++.++...|+...+..+.. ..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3448999886210 00 1124588999998 6778888999999998777664332 12
Q ss_pred --CCCCCHHHHHHHHHhc
Q 002623 439 --GVRISDSALVEAAILS 454 (899)
Q Consensus 439 --~~~i~~~~l~~~~~ls 454 (899)
.+.+++++++.+++..
T Consensus 787 ~~~l~i~~~a~~~L~~~~ 804 (852)
T TIGR03346 787 KITLELSDAALDFLAEAG 804 (852)
T ss_pred CCeecCCHHHHHHHHHhC
Confidence 3678999999888763
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.79 E-value=2.8e-18 Score=195.30 Aligned_cols=195 Identities=28% Similarity=0.384 Sum_probs=155.7
Q ss_pred cHHHHHhcCCCCCCcCchHHHHH---HHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRR---CIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~---~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
||.+++||.+|+++||++..+.. +...+......+++|+||||||||++|+.+++.+ +.+++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 58899999999999999988665 6666667777899999999999999999999987 7788888754
Q ss_pred cccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHH
Q 002623 321 ALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR 397 (899)
Q Consensus 321 ~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~ 397 (899)
.. + ...++.+++.+.. .+.+.||||||+|.+. ...++.|++.++++.+.+|++|+.+++
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~--------~~~q~~LL~~le~~~iilI~att~n~~- 132 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN--------KAQQDALLPHVEDGTITLIGATTENPS- 132 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC--------HHHHHHHHHHhhcCcEEEEEeCCCChh-
Confidence 32 1 1234445555432 2356899999999987 567788999999999999999887654
Q ss_pred hhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCC-CCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHH
Q 002623 398 KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGV-RISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (899)
Q Consensus 398 ~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~-~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~ 476 (899)
+.+++++++||..+.|.+++.++...+++..+..... ++ .++++++..++.++.+ -+..+..+++.++.
T Consensus 133 --~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~G------d~R~aln~Le~~~~ 202 (413)
T PRK13342 133 --FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANG------DARRALNLLELAAL 202 (413)
T ss_pred --hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 4678999999999999999999999999887766432 44 8899999999998854 24567777777664
No 61
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.79 E-value=3.2e-18 Score=207.22 Aligned_cols=216 Identities=17% Similarity=0.218 Sum_probs=176.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+..++|++.+++.+...+........ ++||+|++|||||++|++|+......+.+|+.+||..+......+.+
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~-------pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~l 447 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDS-------TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL 447 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCC-------CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhh
Confidence 35799999999999999887643322 49999999999999999999998777899999999998665555678
Q ss_pred cCCCCCC-cccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 728 IGAPPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 728 ~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
||+..+. .|.. ....+.+..+.+|+||||||+.+++++|..|+.+|+++.+....+......++++|+||+......
T Consensus 448 fg~~~~~~~g~~--~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~ 525 (686)
T PRK15429 448 FGHERGAFTGAS--AQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 525 (686)
T ss_pred cCcccccccccc--cchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHH
Confidence 8875542 2211 112345667778999999999999999999999999988766554444446899999999865443
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHH
Q 002623 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEM 883 (899)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~ 883 (899)
.. .+.|+++|++|+.. .|.+|||. ++|+..+++.++.+++.+++.....+++++
T Consensus 526 ~~-----------------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~a 582 (686)
T PRK15429 526 VA-----------------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAET 582 (686)
T ss_pred HH-----------------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 33 67899999999966 69999998 689999999999999999888888899999
Q ss_pred HHHhhccccccc
Q 002623 884 LVKFCYLAFTIR 895 (899)
Q Consensus 884 l~~~~~~~~~~~ 895 (899)
+..++++.|+.+
T Consensus 583 l~~L~~y~WPGN 594 (686)
T PRK15429 583 LRTLSNMEWPGN 594 (686)
T ss_pred HHHHHhCCCCCc
Confidence 999999999854
No 62
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.3e-18 Score=176.39 Aligned_cols=192 Identities=26% Similarity=0.318 Sum_probs=148.0
Q ss_pred HHHHHhcCCCCCCcCchHHHHHHHHHhhc-----CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 245 LTAMASAGKLDPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~~~~~l~~-----~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.....||..|+++|||++..+++--.++. ...-|+||+||||.||||||..+|+++ |..+-....
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~tsG 85 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITSG 85 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEeccc
Confidence 34457899999999999755554444432 233689999999999999999999999 766665544
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-----------------
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR----------------- 382 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~----------------- 382 (899)
..+... | .+-.++..+. .+-||||||||++. ..+-++|-++|++
T Consensus 86 p~leK~----g----DlaaiLt~Le---~~DVLFIDEIHrl~--------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 86 PALEKP----G----DLAAILTNLE---EGDVLFIDEIHRLS--------PAVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred ccccCh----h----hHHHHHhcCC---cCCeEEEehhhhcC--------hhHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 444322 2 2344444443 34499999999998 5677889999864
Q ss_pred ---CCeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccccc
Q 002623 383 ---GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (899)
Q Consensus 383 ---~~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i 458 (899)
..+.+|||||... .+...|++||. ...+..++.+|+.+|+...... .++.+++++...++..|
T Consensus 147 ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~----l~i~i~~~~a~eIA~rS---- 213 (332)
T COG2255 147 LDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI----LGIEIDEEAALEIARRS---- 213 (332)
T ss_pred ccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH----hCCCCChHHHHHHHHhc----
Confidence 2678999999997 68899999998 6799999999999988776665 78999999999999888
Q ss_pred CCCCChhhHHHHHHHHHHhhhh
Q 002623 459 SGRFLPDKAIDLVDEAAAKLKM 480 (899)
Q Consensus 459 ~~~~~p~~a~~lld~a~~~~~~ 480 (899)
|..|.-|..|+......+.+
T Consensus 214 --RGTPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 214 --RGTPRIANRLLRRVRDFAQV 233 (332)
T ss_pred --cCCcHHHHHHHHHHHHHHHH
Confidence 45899999999887665544
No 63
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.1e-19 Score=178.44 Aligned_cols=186 Identities=23% Similarity=0.401 Sum_probs=145.6
Q ss_pred CCCCCcCchHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 253 KLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
..+++-|-+..-+.+.+.. +|.+-+.+||+|||||||+.||+++|-+. +..|+++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSS 200 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 200 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehH
Confidence 4566777776665555532 44556789999999999999999999998 8899999999
Q ss_pred cccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHH----HHHhhhh----cCCCeEEEEecC
Q 002623 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG----NLLKPML----GRGELRCIGATT 392 (899)
Q Consensus 321 ~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~----~~L~~~l----~~~~v~~I~at~ 392 (899)
+++ +++.|+.+..++.+|.-++. +.|.|+||||||.+.+.++...+...- ++|.++- ++..+.++||||
T Consensus 201 DLv--SKWmGESEkLVknLFemARe-~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 201 DLV--SKWMGESEKLVKNLFEMARE-NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HHH--HHHhccHHHHHHHHHHHHHh-cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 999 56899999999999998876 468999999999998877655332222 2233322 234788888888
Q ss_pred hhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCC
Q 002623 393 LDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (899)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~ 460 (899)
-+ | .+|.+++|||. .|+|+.|....+..+++..+.. ..-.+++..+..++....+|-..
T Consensus 278 iP-w----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 278 IP-W----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred Cc-h----hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCCcC
Confidence 76 3 89999999998 8999999999888887755543 34567888899999999988543
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.79 E-value=5.1e-18 Score=190.94 Aligned_cols=198 Identities=26% Similarity=0.389 Sum_probs=152.4
Q ss_pred CCCCCcCchHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~-------------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.++++.|.++.++.+.+.+. -.+++++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVG 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeeh
Confidence 56678999988877776541 1456789999999999999999999998 888999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhhc-------CCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~~I~ 389 (899)
+.+.. +|.|+.+..++.+|..+.. ..|+||||||+|.+.+.+... +..+.+..+..++. .+++.+|+
T Consensus 199 ~~l~~--~~~g~~~~~i~~~f~~a~~-~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~ 275 (389)
T PRK03992 199 SELVQ--KFIGEGARLVRELFELARE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIA 275 (389)
T ss_pred HHHhH--hhccchHHHHHHHHHHHHh-cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEE
Confidence 88873 4788888889999988765 458999999999998654432 23444555555542 35899999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
|||... .+|+++.+ ||+ .|.|+.|+.+++.+||+.....+.... +..+..++..+.+ +.+..
T Consensus 276 aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-----~~~~~~la~~t~g-----~sgad 340 (389)
T PRK03992 276 ATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-----DVDLEELAELTEG-----ASGAD 340 (389)
T ss_pred ecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-----cCCHHHHHHHcCC-----CCHHH
Confidence 999986 68999998 998 799999999999999998776532211 1235566666655 46678
Q ss_pred HHHHHHHHHHhh
Q 002623 467 AIDLVDEAAAKL 478 (899)
Q Consensus 467 a~~lld~a~~~~ 478 (899)
...++.+|+..+
T Consensus 341 l~~l~~eA~~~a 352 (389)
T PRK03992 341 LKAICTEAGMFA 352 (389)
T ss_pred HHHHHHHHHHHH
Confidence 888888888655
No 65
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.79 E-value=5.9e-19 Score=175.56 Aligned_cols=171 Identities=25% Similarity=0.379 Sum_probs=131.7
Q ss_pred HHhhccceeccchHHHHHHHHHHHHH----cCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 644 EEELHKRVVGQDPAVKSVAEAIQRSR----AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 644 ~~~l~~~i~Gq~~~~~~l~~~l~~~~----~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
.+..+++|+||+++++.-.-.++... .|.=.|+ ++|||||||||||++|+++|... ..|++.++..++.
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPk----nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~li 188 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPK----NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELI 188 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcc----eeEEECCCCccHHHHHHHHhccc---CCceEEechHHHH
Confidence 34456889999999987665554322 1211232 79999999999999999999988 8899999988875
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC------------hHHHHHHHHhhcCCeeecCCCce
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~------------~~~~~~Ll~~le~g~~~~~~g~~ 787 (899)
..| +|. |......+.+..++..+||+||||+|.+. .++.|+||+-||.-.
T Consensus 189 Geh-----VGd-----gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-------- 250 (368)
T COG1223 189 GEH-----VGD-----GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-------- 250 (368)
T ss_pred HHH-----hhh-----HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--------
Confidence 442 221 11222456677778889999999999865 347899999998411
Q ss_pred eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHH
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
....++.|++||. ...++|++++||..-|.|.-++.++...|++.++++
T Consensus 251 -eneGVvtIaaTN~------------------------------p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 251 -ENEGVVTIAATNR------------------------------PELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred -cCCceEEEeecCC------------------------------hhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 1134888999998 788999999999999999999999999999999998
Q ss_pred HHh
Q 002623 868 SKV 870 (899)
Q Consensus 868 ~~~ 870 (899)
+..
T Consensus 300 ~Pl 302 (368)
T COG1223 300 FPL 302 (368)
T ss_pred CCC
Confidence 753
No 66
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.79 E-value=1.1e-17 Score=193.78 Aligned_cols=261 Identities=17% Similarity=0.218 Sum_probs=195.4
Q ss_pred HhhcCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHh-HHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCC
Q 002623 600 YISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLH-LEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRP 678 (899)
Q Consensus 600 ~~~~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~-l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p 678 (899)
+..+..+++.++++.+.+...+........ +. .....+.. ........++|.+..++.+...+....... .
T Consensus 92 ~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~--l~-~~~~~l~~~~~~~~~~~lig~s~~~~~l~~~i~~~a~~~----~- 163 (445)
T TIGR02915 92 IGLGAYDFYQKPIDPDVLKLIVDRAFHLYT--LE-TENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAPSD----I- 163 (445)
T ss_pred HHCCccEEEeCCCCHHHHHHHHhhhhhhhh--hH-HHHHHhhhhhhcccccceeecCHHHHHHHHHHHHHhCCC----C-
Confidence 334445667778888888887776543221 10 01111111 111123468999999998888876543211 1
Q ss_pred cceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCC-cccccccchhHHHhhCCCeEEEE
Q 002623 679 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY-VGYEEGGQLTEVVRRRPYAVILF 757 (899)
Q Consensus 679 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~l 757 (899)
++++.|++||||+.+|++++........+|+.+||+.+.+....+.+||...+. .|.. ....+.+..+.+|+|||
T Consensus 164 --~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l 239 (445)
T TIGR02915 164 --TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAV--KQTLGKIEYAHGGTLFL 239 (445)
T ss_pred --CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCc--cCCCCceeECCCCEEEE
Confidence 489999999999999999999987778899999999997765567889876553 2221 11234566778899999
Q ss_pred eCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCCh
Q 002623 758 DEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 837 (899)
Q Consensus 758 DEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 837 (899)
|||+.+++.+|..|+++++++.+....+......++++|+||+........ .+.|++
T Consensus 240 ~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~~~~ 296 (445)
T TIGR02915 240 DEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA-----------------------EGTFRE 296 (445)
T ss_pred echhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH-----------------------cCCccH
Confidence 999999999999999999998776544444445689999999986544332 678999
Q ss_pred HHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhccccccc
Q 002623 838 EFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIR 895 (899)
Q Consensus 838 ~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 895 (899)
+|++|+.. .|.+|||. .+|+..+++.++.+++.+++.....++++++..++.+.|+.+
T Consensus 297 ~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 297 DLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred HHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 99999964 79999998 689999999999999999888888999999999999999853
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2.2e-18 Score=196.63 Aligned_cols=203 Identities=23% Similarity=0.249 Sum_probs=159.4
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCC---------cc-----
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDV---------PQ----- 307 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~---------p~----- 307 (899)
..|.++|||.+|+++||++..++.+.+.+...+..|. ||+||+|||||++|+.|++.+.+... |.
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 4578999999999999999999999998887777775 99999999999999999999976211 00
Q ss_pred -----ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhh
Q 002623 308 -----ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (899)
Q Consensus 308 -----~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (899)
......++++|..+- .| .+.++++++.+.. .++..|+||||+|.|. ...+|.|++.
T Consensus 84 C~~I~aG~hpDviEIdAas~------~g--VDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------~~AaNALLKT 147 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASN------RG--VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKT 147 (700)
T ss_pred HHHHHcCCCCcceEeccccc------CC--HHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------HHHHHHHHHh
Confidence 001124566654321 11 2234555555432 2346799999999997 6788899999
Q ss_pred hcC--CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 380 LGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 380 l~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
||. ++++||++||... .+.+.+++||+.+.|..++.+++.+.|+.++.. .++.++++++..++..+++
T Consensus 148 LEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~G- 217 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQG- 217 (700)
T ss_pred hccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC-
Confidence 986 5789999999876 678999999999999999999999999888876 6889999999999999875
Q ss_pred cCCCCChhhHHHHHHHHHH
Q 002623 458 ISGRFLPDKAIDLVDEAAA 476 (899)
Q Consensus 458 i~~~~~p~~a~~lld~a~~ 476 (899)
-+.+++.++|.+..
T Consensus 218 -----s~RdALsLLdQaia 231 (700)
T PRK12323 218 -----SMRDALSLTDQAIA 231 (700)
T ss_pred -----CHHHHHHHHHHHHH
Confidence 45688889888765
No 68
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.78 E-value=9.3e-18 Score=195.65 Aligned_cols=254 Identities=18% Similarity=0.229 Sum_probs=191.6
Q ss_pred CcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeE
Q 002623 604 GKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFM 683 (899)
Q Consensus 604 ~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lL 683 (899)
..+.+.+++....+...+.......... . ... ..........++|.+..+..+...+........ +++
T Consensus 98 a~~~l~KP~~~~~L~~~i~~~l~~~~~~--~-~~~--~~~~~~~~~~lig~s~~~~~l~~~~~~~~~~~~-------~vl 165 (469)
T PRK10923 98 AFDYLPKPFDIDEAVALVERAISHYQEQ--Q-QPR--NIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSI-------SVL 165 (469)
T ss_pred cceEEecCCcHHHHHHHHHHHHHHHHHH--H-hhh--hhhhccccccceecCHHHHHHHHHHHHHhccCC-------eEE
Confidence 3355666677777776666543211000 0 000 000011235689999999988888765432211 499
Q ss_pred EeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCc
Q 002623 684 FMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEK 762 (899)
Q Consensus 684 l~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~ 762 (899)
+.|++||||+++|++|+......+.+|+.+||+.+......+.+||+..| +.|.... -.+.+..+.+|.||||||+.
T Consensus 166 i~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~ 243 (469)
T PRK10923 166 INGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI--RQGRFEQADGGTLFLDEIGD 243 (469)
T ss_pred EEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcC--CCCCeeECCCCEEEEecccc
Confidence 99999999999999999999878899999999999776666788998765 3332221 12445667788999999999
Q ss_pred cChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhc
Q 002623 763 AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNR 842 (899)
Q Consensus 763 l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R 842 (899)
+++..|..|+++|+++.+....|......+++||+||+........ .+.|+++|++|
T Consensus 244 l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~~~~~L~~~ 300 (469)
T PRK10923 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ-----------------------EGKFREDLFHR 300 (469)
T ss_pred CCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH-----------------------cCCchHHHHHH
Confidence 9999999999999999887765555455689999999985544332 67899999999
Q ss_pred cc-eEEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhcccccc
Q 002623 843 VD-EYIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTI 894 (899)
Q Consensus 843 ~d-~~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 894 (899)
|. ..|.+|||. .+|+..++++++.+++.+++.....++++++..++.+.|+.
T Consensus 301 l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred hcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 95 489999998 68999999999999998888887889999999999999984
No 69
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.78 E-value=2.9e-18 Score=182.41 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=124.9
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh----hC
Q 002623 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE----SE 347 (899)
Q Consensus 272 ~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~ 347 (899)
.-+.+..++|+||||||||.+|+++|..+ +.+++.++.+++.+ +|.|+.+..++.+|..+.. ..
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~s--k~vGEsEk~IR~~F~~A~~~a~~~~ 211 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELES--ENAGEPGKLIRQRYREAADIIKKKG 211 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhhc--CcCCcHHHHHHHHHHHHHHHhhccC
Confidence 34667788999999999999999999999 99999999999984 5999999999999999975 34
Q ss_pred CCeEEEEccchhhccCCCCC-ch---HHHHHHHhhhhc----------------CCCeEEEEecChhHHHhhhccCHHHH
Q 002623 348 GQIILFIDEIHTVVGAGATN-GA---MDAGNLLKPMLG----------------RGELRCIGATTLDEYRKYIEKDPALE 407 (899)
Q Consensus 348 ~~~IL~iDEi~~l~~~~~~~-~~---~~~~~~L~~~l~----------------~~~v~~I~at~~~~~~~~~~~d~al~ 407 (899)
.||||||||||.+.+..... +. .-+...|...++ .+++.||+|||.+. .+||+|+
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALl 286 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLI 286 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHc
Confidence 79999999999999776432 11 122233444332 34789999999997 7999999
Q ss_pred c--cCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhc
Q 002623 408 R--RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (899)
Q Consensus 408 ~--Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls 454 (899)
| ||+.. +..|+.+++.+||+.+.++ ..++...+..+++..
T Consensus 287 RpGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~f 328 (413)
T PLN00020 287 RDGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDTF 328 (413)
T ss_pred CCCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHcC
Confidence 9 99864 4689999999999988875 244555555554443
No 70
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.78 E-value=3.8e-18 Score=205.48 Aligned_cols=214 Identities=14% Similarity=0.237 Sum_probs=173.0
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
.+..++|.+.+++.+...+........ ++||+|++||||+++|++|++.....+.+|+.+||+.+......+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~-------pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~e 395 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSF-------PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEE 395 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCC-------CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHH
Confidence 367799999999999888877643222 4999999999999999999999877788999999999977655678
Q ss_pred hcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 727 LIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 727 l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
+||...+.. . ....+.+..+.+|+||||||+.+++++|..|+++|+++.++...+......++++|+|||.....+
T Consensus 396 lfg~~~~~~---~-~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~ 471 (638)
T PRK11388 396 FLGSDRTDS---E-NGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAML 471 (638)
T ss_pred hcCCCCcCc---c-CCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHH
Confidence 888653211 1 112244566778999999999999999999999999998775554444445799999999865443
Q ss_pred hccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHH
Q 002623 807 LNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEM 883 (899)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~ 883 (899)
.. .+.|+++|++|+.. .|.+|||. .+|+..+++.++.++..+++.. ..+++++
T Consensus 472 ~~-----------------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~-~~~s~~a 527 (638)
T PRK11388 472 VE-----------------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR-LKIDDDA 527 (638)
T ss_pred Hh-----------------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCC-CCcCHHH
Confidence 32 57899999999965 69999998 5799999999999998877665 4799999
Q ss_pred HHHhhccccccc
Q 002623 884 LVKFCYLAFTIR 895 (899)
Q Consensus 884 l~~~~~~~~~~~ 895 (899)
+..+..+.|+.+
T Consensus 528 ~~~L~~y~WPGN 539 (638)
T PRK11388 528 LARLVSYRWPGN 539 (638)
T ss_pred HHHHHcCCCCCh
Confidence 999999999853
No 71
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=4.2e-18 Score=183.04 Aligned_cols=183 Identities=18% Similarity=0.359 Sum_probs=134.4
Q ss_pred HHHHhHHHhhccceeccchHHHHHHHHHH-------HHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC----C
Q 002623 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQ-------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----T 706 (899)
Q Consensus 638 ~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~-------~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~ 706 (899)
..+..+...++.+++|++.++++|.+.+. +...|...+..+. +++|+||||||||++|+++++.++. .
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~-~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGL-HMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc-eEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34667777888899999999998877642 1234555444333 7999999999999999999998753 2
Q ss_pred CCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCcc---------ChHHHHHHHHhhcC
Q 002623 707 EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDD 777 (899)
Q Consensus 707 ~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l---------~~~~~~~Ll~~le~ 777 (899)
..+++.++++++. ..++|... ....+.++++.++||||||++.+ ..++++.|++.|++
T Consensus 91 ~~~~~~v~~~~l~-----~~~~g~~~--------~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 91 KGHLLTVTRDDLV-----GQYIGHTA--------PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred CCceEEecHHHHH-----HHHhccch--------HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 3357777766542 23344321 12345667778899999999986 46789999999986
Q ss_pred CeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHH
Q 002623 778 GRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI 857 (899)
Q Consensus 778 g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i 857 (899)
+ ..+++||++++... +.. .-.++|+|.+||+.+|.|++|+.+++
T Consensus 158 ~-----------~~~~~vI~ag~~~~-------------------~~~------~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 158 Q-----------RDDLVVIFAGYKDR-------------------MDK------FYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred C-----------CCCEEEEEeCCcHH-------------------HHH------HHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 3 24688888876511 100 12357999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 002623 858 SSIVRLQVSFSKV 870 (899)
Q Consensus 858 ~~I~~~~l~~~~~ 870 (899)
.+|+..++++...
T Consensus 202 ~~I~~~~l~~~~~ 214 (287)
T CHL00181 202 LQIAKIMLEEQQY 214 (287)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998753
No 72
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=2.1e-17 Score=177.58 Aligned_cols=189 Identities=20% Similarity=0.267 Sum_probs=138.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEc
Q 002623 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355 (899)
Q Consensus 276 ~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iD 355 (899)
..|+||+||||||||++|+++|+.+....+ +...+++.++.+.+.+. |.|+...+...++..+ .++|||||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~~l~~~--~~g~~~~~~~~~l~~a----~ggVLfID 129 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRDDLVGQ--YIGHTAPKTKEVLKKA----MGGVLFID 129 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHHHHHHH--HhccchHHHHHHHHHc----cCCEEEEE
Confidence 346899999999999999999998865221 12456899988777643 6777776666666654 35699999
Q ss_pred cchhhccCCCC-CchHHHHHHHhhhhcC--CCeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHH
Q 002623 356 EIHTVVGAGAT-NGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLR 431 (899)
Q Consensus 356 Ei~~l~~~~~~-~~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~ 431 (899)
|+|.+...+.. ....++++.|...|++ +++++|++++......++..+|+|.+||. .|.|++|+.+++.+|+..++
T Consensus 130 E~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 130 EAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred ccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 99999644322 2346778888888874 47899999988877777888999999998 89999999999999999998
Q ss_pred HHHhhhhCCCCCHHHHHHHHHhcccccCCCCC--hhhHHHHHHHHHHh
Q 002623 432 ERYELHHGVRISDSALVEAAILSDRYISGRFL--PDKAIDLVDEAAAK 477 (899)
Q Consensus 432 ~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~--p~~a~~lld~a~~~ 477 (899)
++ .+..+++++...+.....+-.....+ ...+..+++.+..+
T Consensus 210 ~~----~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 210 EE----QQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HH----hcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 87 56778888776666653321111111 23445555555443
No 73
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=8.7e-18 Score=192.30 Aligned_cols=204 Identities=20% Similarity=0.209 Sum_probs=159.0
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
..|.+++||.+|+++||++..++.+...+.+.+..+. ||+||+|||||++|+.+|+.+.+...+..
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 4688999999999999999999999888877665554 99999999999999999999965321110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++.+|.++- .+ .+.++.++..+.. .++..|+||||+|.|. ...++.|++.+++
T Consensus 83 ~g~hpDviEIDAAs~------~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------~~A~NALLKtLEEPP 146 (702)
T PRK14960 83 EGRFIDLIEIDAASR------TK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------THSFNALLKTLEEPP 146 (702)
T ss_pred cCCCCceEEeccccc------CC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhcCC
Confidence 11224666664321 11 2335555555432 2345699999999997 5678889999987
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+.+|++|+... .+.+.+++||..+.|.+++.+++...++.++++ .++.++++++..++..+.+
T Consensus 147 ~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~G------ 211 (702)
T PRK14960 147 EHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQG------ 211 (702)
T ss_pred CCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5788898887765 467889999999999999999999999988887 7899999999999999965
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-...++.++|.+++.
T Consensus 212 dLRdALnLLDQaIay 226 (702)
T PRK14960 212 SLRDALSLTDQAIAY 226 (702)
T ss_pred CHHHHHHHHHHHHHh
Confidence 345788888888764
No 74
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.77 E-value=9.9e-18 Score=187.39 Aligned_cols=199 Identities=20% Similarity=0.317 Sum_probs=148.9
Q ss_pred CCCCCcCchHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~-------------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
+++++.|.+..++.+.+.+. -.+++++||+||||||||++|+++|..+ +.+++.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~ 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVG 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 56778888876665555331 1356789999999999999999999998 888999988
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhhc-------CCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~~I~ 389 (899)
+.+. .+|.|+.+..++.+|..+.. ..|+||||||+|.+...+... .....+..+..++. ..++.+|+
T Consensus 213 s~l~--~k~~ge~~~~lr~lf~~A~~-~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~ 289 (398)
T PTZ00454 213 SEFV--QKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 289 (398)
T ss_pred HHHH--HHhcchhHHHHHHHHHHHHh-cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 7775 34788888889999988875 468999999999998654221 22334444444432 35789999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
|||..+ .+||++.| ||+ .|.|+.|+.+++..|++.+..++.... +-.+..++..+.+ +.+..
T Consensus 290 aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-----dvd~~~la~~t~g-----~sgaD 354 (398)
T PTZ00454 290 ATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-----EVDLEDFVSRPEK-----ISAAD 354 (398)
T ss_pred ecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-----ccCHHHHHHHcCC-----CCHHH
Confidence 999886 79999998 998 799999999999999998887633222 2234555666554 46778
Q ss_pred HHHHHHHHHHhhh
Q 002623 467 AIDLVDEAAAKLK 479 (899)
Q Consensus 467 a~~lld~a~~~~~ 479 (899)
...++.+|+..+.
T Consensus 355 I~~l~~eA~~~A~ 367 (398)
T PTZ00454 355 IAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876543
No 75
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=5e-18 Score=182.71 Aligned_cols=180 Identities=21% Similarity=0.374 Sum_probs=131.7
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHH-------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC----CC
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT----EE 708 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~-------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~----~~ 708 (899)
+.++.+.+...++|.+++++.|.+.+.. .+.|... ..|..+++|+||||||||++|+++++.+... ..
T Consensus 13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 4445556667799999999988775421 2345543 2344479999999999999999999988432 23
Q ss_pred ceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCcc---------ChHHHHHHHHhhcCCe
Q 002623 709 ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA---------HSDVFNVFLQILDDGR 779 (899)
Q Consensus 709 ~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l---------~~~~~~~Ll~~le~g~ 779 (899)
+++.++++++. ..++|... ..+.+.+.++.++||||||++.+ ..++++.|++.|+++.
T Consensus 92 ~~v~v~~~~l~-----~~~~g~~~--------~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~ 158 (284)
T TIGR02880 92 HLVSVTRDDLV-----GQYIGHTA--------PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR 158 (284)
T ss_pred eEEEecHHHHh-----Hhhcccch--------HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC
Confidence 68888876542 23444321 23446677777899999999977 3568899999998632
Q ss_pred eecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHH
Q 002623 780 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 859 (899)
Q Consensus 780 ~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~ 859 (899)
.++++|++++... + +. ...++|+|.+||+..|.|++|+.+|+..
T Consensus 159 -----------~~~~vI~a~~~~~-------------------~-~~-----~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 159 -----------DDLVVILAGYKDR-------------------M-DS-----FFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred -----------CCEEEEEeCCcHH-------------------H-HH-----HHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 4688888887621 0 00 2246899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 002623 860 IVRLQVSFSK 869 (899)
Q Consensus 860 I~~~~l~~~~ 869 (899)
|+.+++++..
T Consensus 203 I~~~~l~~~~ 212 (284)
T TIGR02880 203 IAGLMLKEQQ 212 (284)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 76
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=9.9e-18 Score=197.17 Aligned_cols=203 Identities=19% Similarity=0.212 Sum_probs=158.0
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCC----ccc---------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDV----PQA--------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~----p~~--------- 308 (899)
..|.++|||.+|+++||++..++.+...+...+..|. ||+||+|||||++|+.+|+.+.+... |..
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 5789999999999999999999998888887777776 89999999999999999999976421 110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++++|..+ ..| .+.++.++..+.. .++..|+||||+|.|. .+++|.|++.|+.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP 147 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPP 147 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccC
Confidence 0011234443221 111 1224445444432 2345799999999997 7789999999996
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+++++|++||... .+.+.+++||..+.|.+++.+++...|+.++.. .++.++++++..++.++.|
T Consensus 148 ~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~G------ 212 (944)
T PRK14949 148 EHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANG------ 212 (944)
T ss_pred CCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5789999988876 467899999999999999999999999888876 6899999999999999976
Q ss_pred ChhhHHHHHHHHHH
Q 002623 463 LPDKAIDLVDEAAA 476 (899)
Q Consensus 463 ~p~~a~~lld~a~~ 476 (899)
-+.+++.+++.+.+
T Consensus 213 d~R~ALnLLdQala 226 (944)
T PRK14949 213 SMRDALSLTDQAIA 226 (944)
T ss_pred CHHHHHHHHHHHHH
Confidence 45688899987774
No 77
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.76 E-value=4.6e-16 Score=183.40 Aligned_cols=151 Identities=28% Similarity=0.411 Sum_probs=120.7
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCC----CCCCcccccccchhHHHhhCCCeEEE
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA----PPGYVGYEEGGQLTEVVRRRPYAVIL 756 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~----~~~~~g~~~~~~l~~~~~~~~~~vl~ 756 (899)
++|+.||+.+|||++...+|+.. +..|++||..+.. +...++|. ..|...+.+ |.+.+++++.- .|+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHT---dlqeYiGTyvTdd~G~lsFkE-GvLVeAlR~Gy--WIV 960 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHT---DLQEYIGTYVTDDDGSLSFKE-GVLVEALRRGY--WIV 960 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccc---hHHHHhhceeecCCCceeeeh-hHHHHHHhcCc--EEE
Confidence 39999999999999999999999 8899999998874 34455654 344444554 57788888766 899
Q ss_pred EeCCCccChHHHHHHHHhhcCC-eeecCCCc--eeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHh
Q 002623 757 FDEIEKAHSDVFNVFLQILDDG-RVTDSQGR--TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 833 (899)
Q Consensus 757 lDEid~l~~~~~~~Ll~~le~g-~~~~~~g~--~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (899)
|||...++.+++++|.++||+. ++..+... .++++++++.+|.|++..+. . +.
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~Yg---------G---------------RK 1016 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYG---------G---------------RK 1016 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcccc---------c---------------hH
Confidence 9999999999999999999986 46666533 34568999999999864321 1 56
Q ss_pred cCChHHHhccceEEecCCCCHHHHHHHHHHHH
Q 002623 834 IFRPEFMNRVDEYIVFQPLDRDQISSIVRLQV 865 (899)
Q Consensus 834 ~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l 865 (899)
.++.+|++|| ..++|.....+++..|++..+
T Consensus 1017 ~LSrAFRNRF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1017 GLSRAFRNRF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred HHHHHHHhhh-HhhhcccCcHHHHHHHHhccC
Confidence 7889999999 889999999999998887643
No 78
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.76 E-value=2.2e-17 Score=192.36 Aligned_cols=200 Identities=25% Similarity=0.351 Sum_probs=148.2
Q ss_pred cCCCCCCcCchHHHHHH---HHHhh---------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 251 AGKLDPVIGRDDEIRRC---IQILS---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 251 ~~~l~~iiG~~~~i~~~---~~~l~---------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
..+|++++|.+.....+ +..+. ...++++||+||||||||++|+++|..+ +.+++.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSIS 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeecc
Confidence 34678889987754443 33332 2445789999999999999999999997 88999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---ch---HHHHHHHhhhh----cCCCeEEE
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GA---MDAGNLLKPML----GRGELRCI 388 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~---~~~~~~L~~~l----~~~~v~~I 388 (899)
.+.+.. .+.|..+..++.+|..+.. ..|+||||||+|.+...++.. +. ....+.|+..+ .++.+.+|
T Consensus 121 ~~~~~~--~~~g~~~~~l~~~f~~a~~-~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI 197 (495)
T TIGR01241 121 GSDFVE--MFVGVGASRVRDLFEQAKK-NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVI 197 (495)
T ss_pred HHHHHH--HHhcccHHHHHHHHHHHHh-cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEE
Confidence 887763 3677788889999998875 458999999999998665431 11 22333333333 34579999
Q ss_pred EecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChh
Q 002623 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (899)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~ 465 (899)
+|||.+. .+||+++| ||+ .|.|+.|+.+++.+|++.++... ... ++..+..++..+.+| .+.
T Consensus 198 ~aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~-----sga 262 (495)
T TIGR01241 198 AATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLA-PDVDLKAVARRTPGF-----SGA 262 (495)
T ss_pred EecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCC-cchhHHHHHHhCCCC-----CHH
Confidence 9999987 78999998 998 79999999999999999877652 221 334456677776654 566
Q ss_pred hHHHHHHHHHHhh
Q 002623 466 KAIDLVDEAAAKL 478 (899)
Q Consensus 466 ~a~~lld~a~~~~ 478 (899)
....++.+|+..+
T Consensus 263 dl~~l~~eA~~~a 275 (495)
T TIGR01241 263 DLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888876543
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=2.5e-17 Score=191.86 Aligned_cols=204 Identities=21% Similarity=0.202 Sum_probs=159.8
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCccc--c----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQA--L---------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~~--l---------- 309 (899)
..|.+++||.+|+++||++..++.+...+...+..|. ||+||+|||||++|+.+|+.+.+...... .
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 4689999999999999999999999998877777675 89999999999999999999977421100 0
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 310 --~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
....++++|..+ ..+ .+.++.+++.+.. .++..|+||||+|.|. .+.+|.|++.||+
T Consensus 84 ~g~~~D~ieidaas------~~~--VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------~~a~NALLKtLEEPp 147 (647)
T PRK07994 84 QGRFVDLIEIDAAS------RTK--VEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (647)
T ss_pred cCCCCCceeecccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------HHHHHHHHHHHHcCC
Confidence 111345554322 111 2234555555442 2345699999999998 7789999999997
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+++++|++||... .+.+.+++||..+.|..++.+++...|+.++.. .++.+++.++..++..+++
T Consensus 148 ~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~G------ 212 (647)
T PRK07994 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADG------ 212 (647)
T ss_pred CCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5888999888775 678999999999999999999999999888876 6889999999999999976
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+.+++.++|.+.+.
T Consensus 213 s~R~Al~lldqaia~ 227 (647)
T PRK07994 213 SMRDALSLTDQAIAS 227 (647)
T ss_pred CHHHHHHHHHHHHHh
Confidence 466899999887654
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.75 E-value=1.1e-17 Score=184.11 Aligned_cols=193 Identities=18% Similarity=0.214 Sum_probs=148.1
Q ss_pred cHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccc
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~ 323 (899)
+|.++|||.+|++++|+++.+..+...+......|+||+||||||||++|+++|+.+.+... ...+++++.++..
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 68999999999999999998888877777777788999999999999999999999854321 2346666654432
Q ss_pred ccccccchHHHHHHHHHHHHHh------hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhH
Q 002623 324 AGAKYRGEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDE 395 (899)
Q Consensus 324 ~~~~~~g~~~~~l~~l~~~~~~------~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~ 395 (899)
. ... ++..+..... .+...|++|||+|.+. .++++.|++.++. +..++|.+||...
T Consensus 77 ~----~~~----vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt--------~~aq~aL~~~lE~~~~~t~~il~~n~~~ 140 (319)
T PLN03025 77 G----IDV----VRNKIKMFAQKKVTLPPGRHKIVILDEADSMT--------SGAQQALRRTMEIYSNTTRFALACNTSS 140 (319)
T ss_pred c----HHH----HHHHHHHHHhccccCCCCCeEEEEEechhhcC--------HHHHHHHHHHHhcccCCceEEEEeCCcc
Confidence 1 112 2322222211 1235699999999997 5678889988885 4567788887654
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHH
Q 002623 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld 472 (899)
.+.+++++||..+.|.+|+.+++...++.++++ +++.++++++..++..+.+- ...++..++
T Consensus 141 -----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gD------lR~aln~Lq 202 (319)
T PLN03025 141 -----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGD------MRQALNNLQ 202 (319)
T ss_pred -----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHH
Confidence 567999999999999999999999999988877 79999999999999998753 235666665
No 81
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-17 Score=192.87 Aligned_cols=198 Identities=26% Similarity=0.389 Sum_probs=151.9
Q ss_pred CCCCCCcCchH---HHHHHHHHhh---------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 252 GKLDPVIGRDD---EIRRCIQILS---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 252 ~~l~~iiG~~~---~i~~~~~~l~---------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
-+|.|+.|.++ +|..++..|+ .+.++.+||+||||||||.||+++|.+. +.||++++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 47999999987 5555555553 3566899999999999999999999998 999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCC----CchHHHHHHHhhhh---c----CCCeEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT----NGAMDAGNLLKPML---G----RGELRCI 388 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~----~~~~~~~~~L~~~l---~----~~~v~~I 388 (899)
++++.. +.|.-..+++++|..++.. .|+|+||||||.+...++. .+..+.-+.|.++| + .+.++++
T Consensus 378 SEFvE~--~~g~~asrvr~lf~~ar~~-aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVEM--FVGVGASRVRDLFPLARKN-APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHHH--hcccchHHHHHHHHHhhcc-CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 999855 5555577899999998864 6999999999999877642 23344444455554 3 3479999
Q ss_pred EecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChh
Q 002623 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (899)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~ 465 (899)
++||..+ .+|++|+| ||+ .|.++.|+...+.+|++..+... ....++..+..++.+..+ +.++
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~----~~~~e~~dl~~~a~~t~g-----f~ga 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK----KLDDEDVDLSKLASLTPG-----FSGA 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc----CCCcchhhHHHHHhcCCC-----CcHH
Confidence 9999998 68999999 998 89999999999999999887763 222233444445566554 4566
Q ss_pred hHHHHHHHHHH
Q 002623 466 KAIDLVDEAAA 476 (899)
Q Consensus 466 ~a~~lld~a~~ 476 (899)
+...++.+|+-
T Consensus 521 dl~n~~neaa~ 531 (774)
T KOG0731|consen 521 DLANLCNEAAL 531 (774)
T ss_pred HHHhhhhHHHH
Confidence 77777777654
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.75 E-value=2e-17 Score=196.81 Aligned_cols=198 Identities=23% Similarity=0.316 Sum_probs=154.1
Q ss_pred ccHHHHHhcCCCCCCcCchHHHH---HHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIR---RCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~---~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.+|.+++||.+|++++|++..+. .+...+......+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna 85 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNA 85 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehh
Confidence 48999999999999999998774 45555666677799999999999999999999987 667777765
Q ss_pred ccccccccccchHHHHHHHHHHHHH----hhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhH
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVT----ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDE 395 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~----~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~ 395 (899)
.. .+. .+ ++..+..+. ..+.+.+|||||||.+. ...++.|++.++++.+.+|++|+.++
T Consensus 86 ~~--~~i---~d----ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln--------~~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 86 VL--AGV---KD----LRAEVDRAKERLERHGKRTILFIDEVHRFN--------KAQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred hh--hhh---HH----HHHHHHHHHHHhhhcCCceEEEEeChhhCC--------HHHHHHHHHHhcCceEEEEEecCCCh
Confidence 42 111 11 223333321 22346799999999997 56678899999999999999998876
Q ss_pred HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhh---hhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHH
Q 002623 396 YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYEL---HHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 396 ~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~---~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld 472 (899)
+ +.+++++.+|+..+.|++++.+++..+++..+..... ..++.++++++..++..+.+. -..+..+++
T Consensus 149 ~---~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD------~R~lln~Le 219 (725)
T PRK13341 149 Y---FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD------ARSLLNALE 219 (725)
T ss_pred H---hhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 5 4678999999999999999999999999988875433 246889999999999988643 236777777
Q ss_pred HHHH
Q 002623 473 EAAA 476 (899)
Q Consensus 473 ~a~~ 476 (899)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 7664
No 83
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.75 E-value=2.4e-16 Score=192.35 Aligned_cols=183 Identities=19% Similarity=0.249 Sum_probs=132.9
Q ss_pred CCCcCchHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc-
Q 002623 255 DPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA- 324 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l~~~---------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~- 324 (899)
..++||+..++.+.+.+.+. +...+||+||||||||.+|++||+.+..+ ...++.+||+.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~-------~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG-------EQNLITINMSEFQEA 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC-------CcceEEEeHHHhhhh
Confidence 35999999999999987431 12247999999999999999999998543 45789999887632
Q ss_pred ---------cccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC------------
Q 002623 325 ---------GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ 383 (899)
Q Consensus 325 ---------~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------ 383 (899)
...|.|..+. ..+.++....+.+||+||||+.+. .++.++|.+++++|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~---g~L~~~v~~~p~svvllDEieka~--------~~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG---GVLTEAVRRKPYSVVLLDEVEKAH--------PDVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred hhhccccCCCCCccccccc---chHHHHHHhCCCcEEEEechhhcC--------HHHHHHHHHHhhcceeecCCCcEEec
Confidence 2235554222 122333334567899999999877 77899999999765
Q ss_pred -CeEEEEecChhH--H-------------Hh---------hhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh---
Q 002623 384 -ELRCIGATTLDE--Y-------------RK---------YIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE--- 435 (899)
Q Consensus 384 -~v~~I~at~~~~--~-------------~~---------~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~--- 435 (899)
+..+|+|||... + .. .....|+|.+|++.|.|.+.+.++..+|+...+..+.
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl 787 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRL 787 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467888888411 0 00 0114699999999889999999999999987666543
Q ss_pred -hh--hCCCCCHHHHHHHHHhcc
Q 002623 436 -LH--HGVRISDSALVEAAILSD 455 (899)
Q Consensus 436 -~~--~~~~i~~~~l~~~~~ls~ 455 (899)
.. ..+.+++++++.+++.+.
T Consensus 788 ~~~~gi~l~i~d~a~~~La~~g~ 810 (852)
T TIGR03345 788 KENHGAELVYSEALVEHIVARCT 810 (852)
T ss_pred HHhcCceEEECHHHHHHHHHHcC
Confidence 22 235789999999998874
No 84
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.6e-17 Score=190.47 Aligned_cols=183 Identities=27% Similarity=0.391 Sum_probs=146.2
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEE
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~ 353 (899)
+.+..+||+||||||||++|+++|..+ +.+|+.++.+++. ++|.|+.+..++.+|..+.. ..|+|||
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~~~~l~--sk~vGesek~ir~~F~~A~~-~~p~iiF 340 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVKGSELL--SKWVGESEKNIRELFEKARK-LAPSIIF 340 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEeeCHHHh--ccccchHHHHHHHHHHHHHc-CCCcEEE
Confidence 455689999999999999999999987 9999999999887 56999999999999999985 4689999
Q ss_pred EccchhhccCCCCCch---HHHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHH
Q 002623 354 IDEIHTVVGAGATNGA---MDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDT 423 (899)
Q Consensus 354 iDEi~~l~~~~~~~~~---~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~ 423 (899)
|||+|.+.+.++.... ..+.+.|+..++ ..+|.+|+|||.+. .+|+++.| ||+ .|+|+.|+.+++
T Consensus 341 iDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred EEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc-----ccCHhhcccCccceEeecCCCCHHHH
Confidence 9999999988765432 345555555553 34789999999997 79999999 998 799999999999
Q ss_pred HHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhhc
Q 002623 424 ISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEI 482 (899)
Q Consensus 424 ~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~~ 482 (899)
.+|++..+...... ...+..+..+++.+.+ +.......++.+|+.......
T Consensus 416 ~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~-----~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 416 LEIFKIHLRDKKPP---LAEDVDLEELAEITEG-----YSGADIAALVREAALEALREA 466 (494)
T ss_pred HHHHHHHhcccCCc---chhhhhHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHh
Confidence 99999888752211 1234556666775554 567788888888886655433
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5e-17 Score=184.28 Aligned_cols=204 Identities=20% Similarity=0.217 Sum_probs=160.5
Q ss_pred cHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHhhcCCCccc--------------
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------- 308 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~-~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------- 308 (899)
.|..+|||.+|+++|||+..++.+.+.+...+.. ++||+||+|+||||+|+.+|+.+.+...|..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 4788999999999999999998888877665554 6899999999999999999999876433321
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--C
Q 002623 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (899)
Q Consensus 309 l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~ 383 (899)
.....++++|.++-. | .+.++.+++.+.. .+...|++|||+|.|. ..++|.|+..+++ .
T Consensus 82 ~~~~Dv~eidaas~~------~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 82 SNHPDVIEIDAASNT------S--VDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------NSAFNALLKTLEEPAP 145 (491)
T ss_pred cCCCCEEEEecccCC------C--HHHHHHHHHHHHhccccCCceEEEEeChHhCC--------HHHHHHHHHHHhCCCC
Confidence 234567777764321 1 2235566665543 2345699999999997 5678889999986 5
Q ss_pred CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCC
Q 002623 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (899)
Q Consensus 384 ~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~ 463 (899)
.+.+|++|+... .+.+.+++||+.+.|.+++.+++...++.++++ .++.++++++..+++.+.+ -
T Consensus 146 ~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~G------s 210 (491)
T PRK14964 146 HVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSG------S 210 (491)
T ss_pred CeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------C
Confidence 788888887665 467899999999999999999999999988887 7899999999999999964 3
Q ss_pred hhhHHHHHHHHHHhh
Q 002623 464 PDKAIDLVDEAAAKL 478 (899)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (899)
+..+..+++.++...
T Consensus 211 lR~alslLdqli~y~ 225 (491)
T PRK14964 211 MRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHHHHHHHHHHhc
Confidence 457888888887654
No 86
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.74 E-value=1.1e-16 Score=186.11 Aligned_cols=258 Identities=16% Similarity=0.216 Sum_probs=190.6
Q ss_pred cCcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHH-hHH-HhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcc
Q 002623 603 SGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLL-HLE-EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIA 680 (899)
Q Consensus 603 ~~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~-~l~-~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~ 680 (899)
+..+++.+++..+.+...+........ +.. +...+. .+. ..-...++|.+..+..+...+........
T Consensus 98 Ga~d~l~KP~~~~~L~~~i~~~l~~~~--l~~-~~~~l~~~l~~~~~~~~ii~~S~~~~~~~~~~~~~a~~~~------- 167 (457)
T PRK11361 98 GAFDYVIKPFDLDELNLIVQRALQLQS--MKK-EIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQA------- 167 (457)
T ss_pred CccEEEecccCHHHHHHHHhhhccccc--cch-hhhhhhhhhhccccccceecccHHHhHHHHHHHHHcCCCc-------
Confidence 334556667777777777665433221 110 000011 111 11234589999988888887766543222
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCC-cccccccchhHHHhhCCCeEEEEeC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY-VGYEEGGQLTEVVRRRPYAVILFDE 759 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDE 759 (899)
++++.|++||||+++|++++......+.+|+.+||..+......+.+||+..+. .|... .-.+.+..+.+|+|||||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQT--LRQGLFERANEGTLLLDE 245 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCC--CCCCceEECCCCEEEEec
Confidence 599999999999999999999887778899999999997766667889976542 22211 112455667789999999
Q ss_pred CCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHH
Q 002623 760 IEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 839 (899)
Q Consensus 760 id~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 839 (899)
|+.+++.+|..|+.+|+++.+....+......++++|+|||.....+.. .+.|++++
T Consensus 246 i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~-----------------------~g~~~~~l 302 (457)
T PRK11361 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK-----------------------EGTFREDL 302 (457)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH-----------------------cCCchHHH
Confidence 9999999999999999998766444444344689999999986554433 67899999
Q ss_pred Hhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhccccccc
Q 002623 840 MNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIR 895 (899)
Q Consensus 840 l~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 895 (899)
+.|+.. .|.+|||. .+|+..++..++.++..+++.....++++++..++.+.|+.+
T Consensus 303 ~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 361 (457)
T PRK11361 303 FYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGN 361 (457)
T ss_pred HHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCc
Confidence 999955 79999998 689999999999999988888778999999999999999863
No 87
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.74 E-value=6.8e-18 Score=179.38 Aligned_cols=169 Identities=20% Similarity=0.342 Sum_probs=126.2
Q ss_pred cceeccchHH---HHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhh
Q 002623 649 KRVVGQDPAV---KSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 649 ~~i~Gq~~~~---~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~ 725 (899)
++++||++.+ .-|..++... .+.+++||||||||||++|+.||... +..|..++....
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~------- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS------- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc-------
Confidence 4577777666 3444444321 12269999999999999999999988 788888776543
Q ss_pred hhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCC
Q 002623 726 RLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (899)
Q Consensus 726 ~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~ 801 (899)
|..+.+.+.+..++ ....|||+|||++++...|+.||..+|+|. +++|.+|.-
T Consensus 85 ----------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~-------------iilIGATTE 141 (436)
T COG2256 85 ----------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGT-------------IILIGATTE 141 (436)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCe-------------EEEEeccCC
Confidence 11122233333321 124699999999999999999999999974 667877765
Q ss_pred ChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCH
Q 002623 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNY 881 (899)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~ 881 (899)
.+ .-.+.|+|++|+ .++.|.||+.+++.+++.+.+......+......+++
T Consensus 142 NP----------------------------sF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~ 192 (436)
T COG2256 142 NP----------------------------SFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDE 192 (436)
T ss_pred CC----------------------------CeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCH
Confidence 32 346789999999 9999999999999999999888888888877777888
Q ss_pred HHHHHhh
Q 002623 882 EMLVKFC 888 (899)
Q Consensus 882 ~~l~~~~ 888 (899)
+++..+.
T Consensus 193 ~a~~~l~ 199 (436)
T COG2256 193 EALDYLV 199 (436)
T ss_pred HHHHHHH
Confidence 7755443
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=5.4e-17 Score=185.19 Aligned_cols=203 Identities=22% Similarity=0.244 Sum_probs=149.8
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
..|.+++||.+|+++||++..++.+...+......| +||+||||||||++|+.+|+.+.+...+..
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 357889999999999999998888877776666554 799999999999999999999865321110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++.+|.+. ..| .+.++.+.+.+.. .+...|+||||+|.+. ...++.|+..+++
T Consensus 82 ~g~~~dv~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 82 EGTFMDVIELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------KEAFNALLKTLEEPP 145 (472)
T ss_pred cCCCCccEEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------HHHHHHHHHHHHhCC
Confidence 0112455665422 122 1234444444332 2345699999999997 5567888888886
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+.+|++|+... .+.+++++||..+.|.+++.+++..+++..+.. .++.++++++..++..+.+-
T Consensus 146 ~~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~Gd----- 211 (472)
T PRK14962 146 SHVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGG----- 211 (472)
T ss_pred CcEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCC-----
Confidence 6788888877543 578999999999999999999999988888776 68899999999999987642
Q ss_pred ChhhHHHHHHHHHH
Q 002623 463 LPDKAIDLVDEAAA 476 (899)
Q Consensus 463 ~p~~a~~lld~a~~ 476 (899)
...++..++.++.
T Consensus 212 -lR~aln~Le~l~~ 224 (472)
T PRK14962 212 -LRDALTMLEQVWK 224 (472)
T ss_pred -HHHHHHHHHHHHH
Confidence 2256677766554
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=3.6e-17 Score=188.59 Aligned_cols=204 Identities=21% Similarity=0.178 Sum_probs=159.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
..|.++|||.+|+++||++..++.+...+......| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 83 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHh
Confidence 458999999999999999999999999987777777 599999999999999999999976432211
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++++|.++- .| .+.++.+++.+.. .+...|+||||+|.|. .+++|.|+..|+.
T Consensus 84 ~g~~~d~~eidaas~------~~--v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------~~a~naLLk~LEepp 147 (509)
T PRK14958 84 EGRFPDLFEVDAASR------TK--VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------GHSFNALLKTLEEPP 147 (509)
T ss_pred cCCCceEEEEccccc------CC--HHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------HHHHHHHHHHHhccC
Confidence 01123666664321 11 2235555555442 2345699999999998 6678889999986
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
..+.+|++||... .+.+.+++||..+.|..++.+++...++.++++ .++.++++++..++..+.+
T Consensus 148 ~~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~G------ 212 (509)
T PRK14958 148 SHVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANG------ 212 (509)
T ss_pred CCeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4788888887664 567789999999999999999999888888877 7899999999999999864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..+..+++.+++.
T Consensus 213 slR~al~lLdq~ia~ 227 (509)
T PRK14958 213 SVRDALSLLDQSIAY 227 (509)
T ss_pred cHHHHHHHHHHHHhc
Confidence 356889999988765
No 90
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.74 E-value=2.2e-17 Score=192.43 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=155.5
Q ss_pred hcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 241 YGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
..++|.+++||..|++++|++..++.+...+......++||+||||||||++|+++++........+...+.+++.+||.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 35699999999999999999999999998877777789999999999999999999987643221112225789999986
Q ss_pred ccccccc-c----cchHHHHH---HHHH---------HHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC
Q 002623 321 ALIAGAK-Y----RGEFEDRL---KAVL---------KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG 383 (899)
Q Consensus 321 ~l~~~~~-~----~g~~~~~l---~~l~---------~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~ 383 (899)
......+ + .|.....+ ...+ ..+.....+++||||||+.|. .+.++.|.++|+++
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~--------~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH--------PVQMNKLLKVLEDR 202 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC--------HHHHHHHHHHHHhC
Confidence 4210000 0 00000000 0000 001112346799999999998 67788888877643
Q ss_pred ------------------------------CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHH
Q 002623 384 ------------------------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRER 433 (899)
Q Consensus 384 ------------------------------~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~ 433 (899)
++++|++||..+. .++|++++||..|.|++++.+++.+|++..+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~----~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE----EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc----cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 3578888887664 789999999999999999999999999988877
Q ss_pred HhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhh
Q 002623 434 YELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 434 ~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~ 478 (899)
.++.+++++++.+...+. -...+..+++.|+..+
T Consensus 279 ----~~i~is~~al~~I~~y~~-------n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 279 ----IGINLEKHALELIVKYAS-------NGREAVNIVQLAAGIA 312 (531)
T ss_pred ----cCCCcCHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 668899999987766542 1347778888777543
No 91
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.74 E-value=2e-17 Score=188.04 Aligned_cols=177 Identities=21% Similarity=0.355 Sum_probs=131.8
Q ss_pred hcCCCCCCcCchHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE
Q 002623 250 SAGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (899)
Q Consensus 250 ~~~~l~~iiG~~~~i~~~~~~l~-------------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (899)
...++++|.|.++.++.+.+.+. ..+++++||+||||||||++|+++|+.+...-.........++.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 45578899999998888777542 24567899999999999999999999984321100111233445
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchH----HHHHHHhhhhc----CCCe
Q 002623 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAM----DAGNLLKPMLG----RGEL 385 (899)
Q Consensus 317 l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~----~~~~~L~~~l~----~~~v 385 (899)
+..+.+. .+|.|+.+..++.+|..+... +.|+||||||+|.+++.++..... .+.+.|+..|+ .+++
T Consensus 257 v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 257 IKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred ccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 5555555 358899999999999888753 368999999999998766543222 23344444443 3689
Q ss_pred EEEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHH
Q 002623 386 RCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRER 433 (899)
Q Consensus 386 ~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~ 433 (899)
.+|+|||.++ .+||+++| ||+ .|+|+.|+.+++.+|++.++..
T Consensus 335 iVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 335 IVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 9999999987 68999999 998 7999999999999999887653
No 92
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.2e-17 Score=184.47 Aligned_cols=174 Identities=27% Similarity=0.393 Sum_probs=141.2
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEE
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILF 353 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~ 353 (899)
+...++|||||||||||.||.++|... +..|+++...++. .+|.|..|+.++.+|..+.. ..|||||
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKGPElL--~KyIGaSEq~vR~lF~rA~~-a~PCiLF 765 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKGPELL--SKYIGASEQNVRDLFERAQS-AKPCILF 765 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecCHHHH--HHHhcccHHHHHHHHHHhhc-cCCeEEE
Confidence 344689999999999999999999997 9999999999998 56999999999999999976 5799999
Q ss_pred EccchhhccCCCCC--c-hHHHHHHHhhhhcC--C--CeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHH
Q 002623 354 IDEIHTVVGAGATN--G-AMDAGNLLKPMLGR--G--ELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDT 423 (899)
Q Consensus 354 iDEi~~l~~~~~~~--~-~~~~~~~L~~~l~~--~--~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~ 423 (899)
+||+|.+.+.++.. | ...+.|-|+.-|+. | .|.+++||++++ -+||||+| |++ .|.++.|+..+|
T Consensus 766 FDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd-----liDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 766 FDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPD-----LIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred eccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcc-----ccCHhhcCCCccceeeeCCCCCcHHH
Confidence 99999999888765 3 24566666666652 2 789999999998 58999999 998 789999999999
Q ss_pred HHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHH
Q 002623 424 ISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (899)
Q Consensus 424 ~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~ 475 (899)
.+|++.+...+... ++..++.++...++|. ..+...++-.|.
T Consensus 841 l~il~~ls~s~~~~-----~~vdl~~~a~~T~g~t-----gADlq~ll~~A~ 882 (952)
T KOG0735|consen 841 LEILQVLSNSLLKD-----TDVDLECLAQKTDGFT-----GADLQSLLYNAQ 882 (952)
T ss_pred HHHHHHHhhccCCc-----cccchHHHhhhcCCCc-----hhhHHHHHHHHH
Confidence 99999888764322 3445677788887763 345666665554
No 93
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.74 E-value=6.3e-17 Score=197.24 Aligned_cols=197 Identities=23% Similarity=0.346 Sum_probs=151.2
Q ss_pred CCCCCcCchHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l-------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.++++.|.+...+.+.+.+ ....+.++||+||||||||++|+++|..+ +.+++.++.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~ 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRG 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEeh
Confidence 5778888887655555433 22455679999999999999999999998 899999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCc----hHHHHHHHhhhhc----CCCeEEEEec
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG----AMDAGNLLKPMLG----RGELRCIGAT 391 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~----~~~~~~~L~~~l~----~~~v~~I~at 391 (899)
+.+.+ +|.|+.+..++.+|..+... .|+||||||+|.+.+.++... ...+.+.|...|+ ..++.+|+||
T Consensus 521 ~~l~~--~~vGese~~i~~~f~~A~~~-~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 521 PEILS--KWVGESEKAIREIFRKARQA-APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred HHHhh--cccCcHHHHHHHHHHHHHhc-CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 98874 58999999999999999764 589999999999987665331 1234444444443 4589999999
Q ss_pred ChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCC-HHHHHHHHHhcccccCCCCChhhH
Q 002623 392 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRIS-DSALVEAAILSDRYISGRFLPDKA 467 (899)
Q Consensus 392 ~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~-~~~l~~~~~ls~~~i~~~~~p~~a 467 (899)
|.+. .+||+++| ||+ .|+|+.|+.+++.+||+....+ ..+. +..+..+++.+.+| .+...
T Consensus 598 n~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~------~~~~~~~~l~~la~~t~g~-----sgadi 661 (733)
T TIGR01243 598 NRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS------MPLAEDVDLEELAEMTEGY-----TGADI 661 (733)
T ss_pred CChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC------CCCCccCCHHHHHHHcCCC-----CHHHH
Confidence 9987 69999998 998 7999999999999999866544 2222 23467777777654 45567
Q ss_pred HHHHHHHHHhh
Q 002623 468 IDLVDEAAAKL 478 (899)
Q Consensus 468 ~~lld~a~~~~ 478 (899)
..++.+|+..+
T Consensus 662 ~~~~~~A~~~a 672 (733)
T TIGR01243 662 EAVCREAAMAA 672 (733)
T ss_pred HHHHHHHHHHH
Confidence 77777777544
No 94
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.74 E-value=2.6e-17 Score=184.95 Aligned_cols=201 Identities=22% Similarity=0.327 Sum_probs=149.3
Q ss_pred hcCCCCCCcCchHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE
Q 002623 250 SAGKLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (899)
Q Consensus 250 ~~~~l~~iiG~~~~i~~~~~~l~-------------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (899)
.+.+++++.|.+..++.+.+.+. -..+.++||+||||||||++|+++|..+ +.+++.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~ 247 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SATFLR 247 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEE
Confidence 33567788898887777766542 1355789999999999999999999998 778999
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCC---CchHHHHHHHhhhh-------cCCCeE
Q 002623 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPML-------GRGELR 386 (899)
Q Consensus 317 l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l-------~~~~v~ 386 (899)
++.+.+.. +|.|+....++.+|..+.. ..|+||||||||.+...+.. .+..+++..+..++ ..+++.
T Consensus 248 V~~seL~~--k~~Ge~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 248 VVGSELIQ--KYLGDGPKLVRELFRVAEE-NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred Eecchhhh--hhcchHHHHHHHHHHHHHh-CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 98887763 5888888889999988765 46899999999999865432 23344444444443 245899
Q ss_pred EEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCC
Q 002623 387 CIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (899)
Q Consensus 387 ~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~ 463 (899)
+|+|||..+ .+|+++.| ||+ .|.|+.|+.+++.+||+....++....+ ..+..++..+.+| .
T Consensus 325 VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d-----vdl~~la~~t~g~-----s 389 (438)
T PTZ00361 325 VIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED-----VDLEEFIMAKDEL-----S 389 (438)
T ss_pred EEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC-----cCHHHHHHhcCCC-----C
Confidence 999999886 68999987 998 8999999999999999987765322111 2244555555543 4
Q ss_pred hhhHHHHHHHHHHhh
Q 002623 464 PDKAIDLVDEAAAKL 478 (899)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (899)
+.....++.+|+..+
T Consensus 390 gAdI~~i~~eA~~~A 404 (438)
T PTZ00361 390 GADIKAICTEAGLLA 404 (438)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777776554
No 95
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-17 Score=163.79 Aligned_cols=155 Identities=25% Similarity=0.418 Sum_probs=131.1
Q ss_pred HhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCC
Q 002623 270 ILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQ 349 (899)
Q Consensus 270 ~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~ 349 (899)
.|.-..+..+||+||||+|||.+|+++|+.- .|.|+.+..++++ .+|.|+....++++|--++. ..|
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgselv--qk~igegsrmvrelfvmare-hap 241 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV--QKYIGEGSRMVRELFVMARE-HAP 241 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechHHHH--HHHhhhhHHHHHHHHHHHHh-cCC
Confidence 3445677899999999999999999999987 8999999999988 56999999999999988876 468
Q ss_pred eEEEEccchhhccCCCCC---chHHHHHHHhhhhc-------CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eEEec
Q 002623 350 IILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVD 416 (899)
Q Consensus 350 ~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~ 416 (899)
.|+|.||||.+-.++... |..+++..++.+|. ..++.+|.|||..+ -+||+|+| |++ .|+||
T Consensus 242 siifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid-----ild~allrpgridrkiefp 316 (404)
T KOG0728|consen 242 SIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred ceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc-----cccHhhcCCCcccccccCC
Confidence 999999999998665432 56677777776663 45899999999998 58999999 998 89999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCC
Q 002623 417 QPNVEDTISILRGLRERYELHHGVRI 442 (899)
Q Consensus 417 ~ps~ee~~~Il~~~~~~~~~~~~~~i 442 (899)
+|+.+.+.+||+....+.+...++++
T Consensus 317 ~p~e~ar~~ilkihsrkmnl~rgi~l 342 (404)
T KOG0728|consen 317 PPNEEARLDILKIHSRKMNLTRGINL 342 (404)
T ss_pred CCCHHHHHHHHHHhhhhhchhcccCH
Confidence 99999999999988888776666653
No 96
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=2e-16 Score=170.39 Aligned_cols=166 Identities=22% Similarity=0.263 Sum_probs=130.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEc
Q 002623 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355 (899)
Q Consensus 276 ~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iD 355 (899)
..|+||+||||||||++|+++++.+..... +...+++.++++++.. .+.|+....+..++..+ .+++||||
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~~l~~--~~~g~~~~~~~~~~~~a----~~gvL~iD 128 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRDDLVG--QYIGHTAPKTKEILKRA----MGGVLFID 128 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHHHHhH--hhcccchHHHHHHHHHc----cCcEEEEe
Confidence 348999999999999999999999865321 1234799999887764 47787777777777655 35799999
Q ss_pred cchhhccCCCC-CchHHHHHHHhhhhcC--CCeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHH
Q 002623 356 EIHTVVGAGAT-NGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLR 431 (899)
Q Consensus 356 Ei~~l~~~~~~-~~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~ 431 (899)
|++.+.+.++. ....++++.|.+.|+. +++++|++++.+....++.++|+|.+||. .|.|++++.+++..|++.++
T Consensus 129 Ei~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 129 EAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred chhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 99998643322 2345677888888874 48899999988777777788999999997 89999999999999999998
Q ss_pred HHHhhhhCCCCCHHHHHHHHHhc
Q 002623 432 ERYELHHGVRISDSALVEAAILS 454 (899)
Q Consensus 432 ~~~~~~~~~~i~~~~l~~~~~ls 454 (899)
.+ .+..++++++..+..+.
T Consensus 209 ~~----~~~~l~~~a~~~L~~~l 227 (284)
T TIGR02880 209 KE----QQYRFSAEAEEAFADYI 227 (284)
T ss_pred HH----hccccCHHHHHHHHHHH
Confidence 87 45678888887776653
No 97
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.73 E-value=2.2e-16 Score=186.06 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=108.0
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccc--------hHHHHHHHHHHHHHh
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG--------EFEDRLKAVLKEVTE 345 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g--------~~~~~l~~l~~~~~~ 345 (899)
...-++||-||+.+|||+.+.++|+.. |.+|+++|-.....-..|.| ...-+- .++-++.+
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~t----------ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkE-GvLVeAlR 954 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARET----------GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKE-GVLVEALR 954 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHh----------CccEEEecCcccchHHHHhhceeecCCCceeeeh-hHHHHHHh
Confidence 344678999999999999999999998 99999998766543333333 222222 23334443
Q ss_pred hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC----------------CeEEEEecChh-HHHhhhccCHHHHc
Q 002623 346 SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------------ELRCIGATTLD-EYRKYIEKDPALER 408 (899)
Q Consensus 346 ~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~----------------~v~~I~at~~~-~~~~~~~~d~al~~ 408 (899)
. +-.+++||+.... .++...|.++|+.+ ++++.+|-|++ .|.+...+..||++
T Consensus 955 ~--GyWIVLDELNLAp--------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN 1024 (4600)
T COG5271 955 R--GYWIVLDELNLAP--------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN 1024 (4600)
T ss_pred c--CcEEEeeccccCc--------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh
Confidence 2 4488999998766 78899999999753 45566666644 47777788999999
Q ss_pred cCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhc
Q 002623 409 RFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (899)
Q Consensus 409 Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls 454 (899)
||-.+.|..-+.+|+..||+.- ..|.+.-...+++.-
T Consensus 1025 RFlE~hFddipedEle~ILh~r---------c~iapSyakKiVeVy 1061 (4600)
T COG5271 1025 RFLEMHFDDIPEDELEEILHGR---------CEIAPSYAKKIVEVY 1061 (4600)
T ss_pred hhHhhhcccCcHHHHHHHHhcc---------CccCHHHHHHHHHHH
Confidence 9999999999999999998743 344554444444443
No 98
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.6e-17 Score=173.40 Aligned_cols=195 Identities=24% Similarity=0.390 Sum_probs=147.0
Q ss_pred CCCCCcCchHHHHHHHHHh----h----------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 253 KLDPVIGRDDEIRRCIQIL----S----------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l----~----------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
+|+++-|.+..+..+.+.. . -++..++||+||||||||.+|+++|++. +..++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 4666666666555554422 0 1355789999999999999999999998 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHh-hhh-------c--CCCeEEE
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLK-PML-------G--RGELRCI 388 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~-~~l-------~--~~~v~~I 388 (899)
++.+++ ++-|+.+..++.+|.-+.+. .|+|+||||++.+.+.++.. .-++-..++ ++| . +..|.|+
T Consensus 160 ~s~lt~--KWfgE~eKlv~AvFslAsKl-~P~iIFIDEvds~L~~R~s~-dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 160 VSNLTS--KWFGEAQKLVKAVFSLASKL-QPSIIFIDEVDSFLGQRRST-DHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhhc-CcceeehhhHHHHHhhcccc-hHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 999986 67799999999999988765 59999999999999887433 223332332 333 1 2269999
Q ss_pred EecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhH
Q 002623 389 GATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (899)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a 467 (899)
||||++. ++|.++.||+. .+.|..|+.+++.+||+.+++.-. ++ ++-.+..++.++.+|- ....
T Consensus 236 gATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~----~e-~~vD~~~iA~~t~GyS-----GSDL 300 (386)
T KOG0737|consen 236 GATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK----LE-DDVDLDEIAQMTEGYS-----GSDL 300 (386)
T ss_pred eCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc----cC-cccCHHHHHHhcCCCc-----HHHH
Confidence 9999995 89999999997 899999999999999999998733 22 3334566788888773 3355
Q ss_pred HHHHHHHHH
Q 002623 468 IDLVDEAAA 476 (899)
Q Consensus 468 ~~lld~a~~ 476 (899)
..++..|+.
T Consensus 301 kelC~~Aa~ 309 (386)
T KOG0737|consen 301 KELCRLAAL 309 (386)
T ss_pred HHHHHHHhH
Confidence 556655543
No 99
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.8e-17 Score=164.04 Aligned_cols=152 Identities=24% Similarity=0.385 Sum_probs=127.8
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeE
Q 002623 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQII 351 (899)
Q Consensus 272 ~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~I 351 (899)
.--++.++|+|||||||||.||+++|+.- ...|+.+..++++ .+|.|+....++++|.-++.. .|.|
T Consensus 185 gidpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlaken-apsi 251 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKEN-APSI 251 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhcc-CCcE
Confidence 44678899999999999999999999986 7889999999988 569999999999999988864 6899
Q ss_pred EEEccchhhccCCC---CCchHHHHHHHhhhhc-------CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecCC
Q 002623 352 LFIDEIHTVVGAGA---TNGAMDAGNLLKPMLG-------RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQP 418 (899)
Q Consensus 352 L~iDEi~~l~~~~~---~~~~~~~~~~L~~~l~-------~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~p 418 (899)
+||||+|.+...+- ++...+++.+|..+|. .-++.+|.+||..+ .+||+|+| |++ .|+|+.|
T Consensus 252 ifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 252 IFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred EEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCC
Confidence 99999999875442 2345678888888774 23899999999997 79999999 998 8999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhCCC
Q 002623 419 NVEDTISILRGLRERYELHHGVR 441 (899)
Q Consensus 419 s~ee~~~Il~~~~~~~~~~~~~~ 441 (899)
+..+..-++..+..++.....++
T Consensus 327 drrqkrlvf~titskm~ls~~vd 349 (408)
T KOG0727|consen 327 DRRQKRLVFSTITSKMNLSDEVD 349 (408)
T ss_pred chhhhhhhHHhhhhcccCCcccC
Confidence 99999999998888765544443
No 100
>CHL00176 ftsH cell division protein; Validated
Probab=99.73 E-value=1.3e-16 Score=187.56 Aligned_cols=198 Identities=24% Similarity=0.361 Sum_probs=145.5
Q ss_pred CCCCCCcCchHHHHH---HHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 252 GKLDPVIGRDDEIRR---CIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~---~~~~l~~---------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.+|++++|.++..+. ++..+.. ..+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 468889998764444 3333322 335689999999999999999999998 889999998
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCC---CchHHHHHHHhhh---h----cCCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPM---L----GRGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~---~~~~~~~~~L~~~---l----~~~~v~~I~ 389 (899)
+.+.. .+.|.....++.+|..+.. ..|+||||||+|.+...++. .+.......|.++ + .+.++.+|+
T Consensus 250 s~f~~--~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 250 SEFVE--MFVGVGAARVRDLFKKAKE-NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HHHHH--HhhhhhHHHHHHHHHHHhc-CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 88763 3566666778889998875 46899999999999754432 1222222333333 3 345789999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
+||..+ .+|++++| ||+ .|.|+.|+.+++.+||+.++... . ..++..+..++..+.+ +.+..
T Consensus 327 aTN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~----~-~~~d~~l~~lA~~t~G-----~sgaD 391 (638)
T CHL00176 327 ATNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK----K-LSPDVSLELIARRTPG-----FSGAD 391 (638)
T ss_pred ecCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc----c-cchhHHHHHHHhcCCC-----CCHHH
Confidence 999987 58999998 898 79999999999999999888751 1 2245556677776655 35667
Q ss_pred HHHHHHHHHHh
Q 002623 467 AIDLVDEAAAK 477 (899)
Q Consensus 467 a~~lld~a~~~ 477 (899)
...++.+|+..
T Consensus 392 L~~lvneAal~ 402 (638)
T CHL00176 392 LANLLNEAAIL 402 (638)
T ss_pred HHHHHHHHHHH
Confidence 78888887644
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.1e-16 Score=184.22 Aligned_cols=205 Identities=20% Similarity=0.209 Sum_probs=156.6
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc--c----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--L---------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~--l---------- 309 (899)
.+|.+++||..|+++||++..++.+...+......| +||+||+|||||++|+.+|+.+.+...... .
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999888887766555 689999999999999999999875221100 0
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 310 --~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
....++++|...- .| .+.++.+++.+.. .++..|+||||+|.+. ..+++.|+..|++
T Consensus 84 ~~~~~dlieidaas~------~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------~~a~naLLK~LEepp 147 (546)
T PRK14957 84 NNSFIDLIEIDAASR------TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------KQSFNALLKTLEEPP 147 (546)
T ss_pred cCCCCceEEeecccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------HHHHHHHHHHHhcCC
Confidence 1124555553221 11 1124445544432 2456799999999997 6788999999997
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+.+|++|+... .+.+.+++||..+.|.+++.+++...++.++++ +++.++++++..++..+.+
T Consensus 148 ~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~G------ 212 (546)
T PRK14957 148 EYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKG------ 212 (546)
T ss_pred CCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4788888887643 566789999999999999999999888888877 6899999999999999964
Q ss_pred ChhhHHHHHHHHHHhh
Q 002623 463 LPDKAIDLVDEAAAKL 478 (899)
Q Consensus 463 ~p~~a~~lld~a~~~~ 478 (899)
-..+++.+++.+++..
T Consensus 213 dlR~alnlLek~i~~~ 228 (546)
T PRK14957 213 SLRDALSLLDQAISFC 228 (546)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 3457888998887653
No 102
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.73 E-value=2.8e-16 Score=183.04 Aligned_cols=255 Identities=20% Similarity=0.274 Sum_probs=190.2
Q ss_pred CcccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeE
Q 002623 604 GKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFM 683 (899)
Q Consensus 604 ~~~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lL 683 (899)
..+.+.+++..+.+...+......... .. .. ............++|.+.+...+...+....... . +++
T Consensus 93 a~~~l~KP~~~~~L~~~i~~~l~~~~~--~~-~~-~~~~~~~~~~~~lig~s~~~~~v~~~i~~~a~~~------~-~vl 161 (463)
T TIGR01818 93 AFEYLPKPFDLDEAVTLVERALAHAQE--QV-AL-PADAGEAEDSAELIGEAPAMQEVFRAIGRLSRSD------I-TVL 161 (463)
T ss_pred cceeecCCCCHHHHHHHHHHHHHHHHH--HH-hh-hhhhhccccccceeecCHHHHHHHHHHHHHhCcC------C-eEE
Confidence 334566677777777776654321100 00 00 0000000112458999999988888876533211 1 499
Q ss_pred EeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCc
Q 002623 684 FMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEK 762 (899)
Q Consensus 684 l~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~ 762 (899)
+.|++||||+++|++++....+...+|+.+||+.+......+.+||+..+ +.|... ...+.+..+.+++||||||+.
T Consensus 162 i~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~ 239 (463)
T TIGR01818 162 INGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANT--RRQGRFEQADGGTLFLDEIGD 239 (463)
T ss_pred EECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCccc--CCCCcEEECCCCeEEEEchhh
Confidence 99999999999999999998877899999999999766556778887654 333221 123455667789999999999
Q ss_pred cChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhc
Q 002623 763 AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNR 842 (899)
Q Consensus 763 l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R 842 (899)
+++++|..|+++|++|.+....|......++++|+||+.....+.. .+.|+++|++|
T Consensus 240 l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~f~~~L~~r 296 (463)
T TIGR01818 240 MPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR-----------------------QGKFREDLFHR 296 (463)
T ss_pred CCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH-----------------------cCCcHHHHHHH
Confidence 9999999999999999877655555455689999999986554433 67899999999
Q ss_pred cce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhcccccc
Q 002623 843 VDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTI 894 (899)
Q Consensus 843 ~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 894 (899)
+.. .|.+|||. .+|+..+++.++.+++.+++.....++++++..++.+.|+.
T Consensus 297 l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 351 (463)
T TIGR01818 297 LNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPG 351 (463)
T ss_pred hCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 975 89999999 79999999999999998888877889999999999999984
No 103
>PRK15115 response regulator GlrR; Provisional
Probab=99.73 E-value=1.8e-16 Score=183.57 Aligned_cols=247 Identities=15% Similarity=0.194 Sum_probs=184.0
Q ss_pred ccccccCChhhHHHHHHHHhcCCcccchhhHHHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEe
Q 002623 606 SMLREEVTGSDIAEIVSKWTGIPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFM 685 (899)
Q Consensus 606 ~~~~~~v~~~~i~~~~~~~~g~~~~~~~~~~~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~ 685 (899)
+.+.+++..+.+...+.......... . .......++|.+..+..+...+...... .+ +++++
T Consensus 102 ~~l~KP~~~~~L~~~l~~~~~~~~~~----~-------~~~~~~~lig~s~~~~~~~~~~~~~a~~-----~~--~vli~ 163 (444)
T PRK15115 102 SFLTKPVDRDALYKAIDDALEQSAPA----T-------DERWREAIVTRSPLMLRLLEQARMVAQS-----DV--SVLIN 163 (444)
T ss_pred hhccCCCCHHHHHHHHHHHHHhhhcc----c-------ccchhhcccccCHHHHHHHHHHHhhccC-----CC--eEEEE
Confidence 45566777777777776543321100 0 0011235788888777776666543221 11 49999
Q ss_pred ccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCC-cccccccchhHHHhhCCCeEEEEeCCCccC
Q 002623 686 GPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY-VGYEEGGQLTEVVRRRPYAVILFDEIEKAH 764 (899)
Q Consensus 686 Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~l~ 764 (899)
|++||||+++|+++++.....+.+|+.+||..+.+....+.+||+..+. .|... ...+.+..+.+++||||||+.++
T Consensus 164 Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~ 241 (444)
T PRK15115 164 GQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMP 241 (444)
T ss_pred cCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCC
Confidence 9999999999999999987778899999999987766567788876552 22211 12244566778999999999999
Q ss_pred hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccc
Q 002623 765 SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD 844 (899)
Q Consensus 765 ~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d 844 (899)
++.|..|+.+|+++.+....+......++++|+||+........ .+.|+++|++|++
T Consensus 242 ~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~-----------------------~~~f~~~l~~~l~ 298 (444)
T PRK15115 242 APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA-----------------------RGEFREDLYYRLN 298 (444)
T ss_pred HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH-----------------------cCCccHHHHHhhc
Confidence 99999999999998775443434344689999999985443322 6789999999996
Q ss_pred e-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhccccccc
Q 002623 845 E-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIR 895 (899)
Q Consensus 845 ~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 895 (899)
. .|.+|||. .+|+..+++.++.++..+++.....++++++..++.+.|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgN 352 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGN 352 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCh
Confidence 5 79999998 589999999999999888887777899999999999999853
No 104
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.9e-17 Score=161.14 Aligned_cols=172 Identities=22% Similarity=0.372 Sum_probs=136.9
Q ss_pred CCCCCcCchHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l-------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
...++-|.++.|+.+++.+ .-++++.+|+|||||||||.+|++.|..- +..|+.+-.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAg 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAG 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcc
Confidence 3556777788777777654 34677899999999999999999999876 677777765
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhhc-------CCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG-------RGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~-------~~~v~~I~ 389 (899)
..++ ..|.|+....+++.|.-++.. .|+|+||||++.+...+-.. |..+++..++.+|. +.++.+|+
T Consensus 239 PQLV--QMfIGdGAkLVRDAFaLAKEk-aP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviA 315 (424)
T KOG0652|consen 239 PQLV--QMFIGDGAKLVRDAFALAKEK-APTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIA 315 (424)
T ss_pred hHHH--hhhhcchHHHHHHHHHHhhcc-CCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEe
Confidence 5555 458888888888998888764 69999999999987554332 66778877777764 34899999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCC
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRI 442 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i 442 (899)
+||..+ -+||+|+| |++ .|+||.|+.+.+..|++....++.....+.+
T Consensus 316 ATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf 366 (424)
T KOG0652|consen 316 ATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF 366 (424)
T ss_pred eccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH
Confidence 999998 58999999 998 8999999999999999988877655545544
No 105
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.1e-17 Score=177.88 Aligned_cols=187 Identities=22% Similarity=0.288 Sum_probs=144.2
Q ss_pred hccceeccchHHHHHHHHHHHHH-------cCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
-|++|.|-+++++.|.+.+...+ .|..-| . .+||+||||||||.|||++|-.. +.||++...++|.
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLP---K-GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLP---K-GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFD 374 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCC---C-ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchh
Confidence 47889999999999998886543 333333 3 39999999999999999999888 8999999999996
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCcee
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
+. ++| +|....+.|+.+.+.+.+|||||||||... ...+|+||-.||.-.
T Consensus 375 Em-----~VG-----vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~--------- 435 (752)
T KOG0734|consen 375 EM-----FVG-----VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK--------- 435 (752)
T ss_pred hh-----hhc-----ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC---------
Confidence 54 122 233334678888898889999999999864 236788888887421
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS 866 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~ 866 (899)
....+|||.+||. .+.++++|. +|||..|.+|.|+-.-..+|+..++.
T Consensus 436 qNeGiIvigATNf------------------------------pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 436 QNEGIIVIGATNF------------------------------PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred cCCceEEEeccCC------------------------------hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 1135899999999 566677776 89999999999999999999999999
Q ss_pred HHHhh-------cccCCCccCHHHHHHhhc
Q 002623 867 FSKVS-------WIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 867 ~~~~~-------~~~~~~~~~~~~l~~~~~ 889 (899)
++... +.+...+|+...|+.+-+
T Consensus 486 ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 486 KIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred cCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 86542 223347888887766644
No 106
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2e-16 Score=183.74 Aligned_cols=202 Identities=20% Similarity=0.212 Sum_probs=157.4
Q ss_pred HHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc---------------
Q 002623 245 LTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------- 308 (899)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~--------------- 308 (899)
|.++|||.+|+++|||+..++.+...+......| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 6789999999999999999999999888877778 589999999999999999999976322110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
-....++++|.+.. .| .+.++.+.+.+.. .+..-|++|||+|.|. ..++|.|+..|+.
T Consensus 83 ~~~~~dvieidaas~------~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------~~A~NALLK~LEEpp 146 (584)
T PRK14952 83 GPGSIDVVELDAASH------GG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------TAGFNALLKIVEEPP 146 (584)
T ss_pred cCCCceEEEeccccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------HHHHHHHHHHHhcCC
Confidence 01234556654321 11 1234444444432 2345699999999997 6788999999986
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+++|++|+... .+.+.+++||+.+.|..++.+++.+.+..++++ .++.++++++..++..+.+
T Consensus 147 ~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~G------ 211 (584)
T PRK14952 147 EHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGG------ 211 (584)
T ss_pred CCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5888998887775 677999999999999999999999888888877 6889999999999998864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..++.++|..++.
T Consensus 212 dlR~aln~Ldql~~~ 226 (584)
T PRK14952 212 SPRDTLSVLDQLLAG 226 (584)
T ss_pred CHHHHHHHHHHHHhc
Confidence 355788899887764
No 107
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.6e-17 Score=177.48 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=153.3
Q ss_pred cCCCCCCcCchHHHHHHHHHh------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 251 AGKLDPVIGRDDEIRRCIQIL------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 251 ~~~l~~iiG~~~~i~~~~~~l------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
+-..+++.|.+..-+.+.+.. .|.....+||.||||+|||.|++++|-+. +..|+.+.
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~iS 218 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNIS 218 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEeecc
Confidence 345667777554333333221 34556789999999999999999999998 99999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCc---hHH-HHHHHhhhh-----cCCCeEEEE
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMD-AGNLLKPML-----GRGELRCIG 389 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~---~~~-~~~~L~~~l-----~~~~v~~I~ 389 (899)
.+++. ++|.|+.+..++.+|.-++. ..|.|+||||+|.++..+.... +.. -...|.+.. ...+|++||
T Consensus 219 assLt--sK~~Ge~eK~vralf~vAr~-~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 219 ASSLT--SKYVGESEKLVRALFKVARS-LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIG 295 (428)
T ss_pred HHHhh--hhccChHHHHHHHHHHHHHh-cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEe
Confidence 88888 56999999999999987765 4689999999999998774431 111 123333333 245899999
Q ss_pred ecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHH
Q 002623 390 ATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~ 468 (899)
|||.+. ++|.+++|||+ .++|+.|+.+.+..+|..++.. ++..+.+..+..+++++++|-.. ...
T Consensus 296 aTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~----~~~~l~~~d~~~l~~~Tegysgs-----di~ 361 (428)
T KOG0740|consen 296 ATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE----QPNGLSDLDISLLAKVTEGYSGS-----DIT 361 (428)
T ss_pred cCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCcccc-----cHH
Confidence 999985 89999999998 7899999999999999999987 46778889999999999998554 444
Q ss_pred HHHHHHH
Q 002623 469 DLVDEAA 475 (899)
Q Consensus 469 ~lld~a~ 475 (899)
+++.+|.
T Consensus 362 ~l~kea~ 368 (428)
T KOG0740|consen 362 ALCKEAA 368 (428)
T ss_pred HHHHHhh
Confidence 5555554
No 108
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=7.2e-17 Score=163.79 Aligned_cols=170 Identities=16% Similarity=0.264 Sum_probs=133.6
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
.+++++||+++++.+.-.++.++... ..+.|+||+||||.|||+||..||+.+ +.++.......+...
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~----e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~----- 91 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRG----EALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKP----- 91 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcC----CCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccCh-----
Confidence 35678999999999999998776533 345589999999999999999999999 665554444433222
Q ss_pred hcCCCCCCcccccccchhHHHh-hCCCeEEEEeCCCccChHHHHHHHHhhcCCeee--cCCC-----ceeeeCCEEEEEe
Q 002623 727 LIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVT--DSQG-----RTVSFTNTVIIMT 798 (899)
Q Consensus 727 l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~--~~~g-----~~~~~~~~iiI~t 798 (899)
+.+...+. -.++.|||||||+.+++.+-+.|+.+||+-.+- .+.| ..++.+.+.+|.+
T Consensus 92 --------------gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 92 --------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred --------------hhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 23334443 345679999999999999999999999997543 2222 2456689999999
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhc
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 872 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~ 872 (899)
|.. .+.+..+|.+||..+.++..|+.+|+.+|+.+.-..++.++
T Consensus 158 TTr------------------------------~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i 201 (332)
T COG2255 158 TTR------------------------------AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI 201 (332)
T ss_pred ccc------------------------------cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC
Confidence 887 67888899999999999999999999999999888777443
No 109
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.1e-16 Score=178.93 Aligned_cols=204 Identities=21% Similarity=0.201 Sum_probs=153.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCcc--cc----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ--AL---------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~--~l---------- 309 (899)
.+|.+++||.+|++++|++..++.+...+......|. ||+||+|+|||++|+.+|+.+.+...+. ..
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4689999999999999999999998888877666664 8999999999999999999986422110 00
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 310 --~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
....++.++.+.- . ..+.++.+++.+... +...|++|||+|.+. ..+++.|++.++.
T Consensus 84 ~~~~~d~~~~~~~~~------~--~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------~~a~naLLk~lEe~~ 147 (363)
T PRK14961 84 KGLCLDLIEIDAASR------T--KVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (363)
T ss_pred cCCCCceEEeccccc------C--CHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 0123444433210 1 122355555554321 234699999999997 5567778888875
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+.+|.+|+... .+.+++++||..+.|.+|+.+++.++++..+++ .++.++++++..++..+.+
T Consensus 148 ~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G------ 212 (363)
T PRK14961 148 QHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHG------ 212 (363)
T ss_pred CCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5777888887654 577899999999999999999999999888877 6788999999999998864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..+..+++.+++.
T Consensus 213 ~~R~al~~l~~~~~~ 227 (363)
T PRK14961 213 SMRDALNLLEHAINL 227 (363)
T ss_pred CHHHHHHHHHHHHHh
Confidence 456788888887654
No 110
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.72 E-value=1.2e-16 Score=176.88 Aligned_cols=189 Identities=25% Similarity=0.298 Sum_probs=142.1
Q ss_pred HHHHhcCCCCCCcCchHHHHHHHHHhh-----cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 246 TAMASAGKLDPVIGRDDEIRRCIQILS-----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 246 ~~~~~~~~l~~iiG~~~~i~~~~~~l~-----~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
..++||..|++++|+++.++.+...+. .....+++|+||||||||++|+.+|+.+ +..+...+.+
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~~ 85 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSGP 85 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecc
Confidence 567899999999999998887766553 2345689999999999999999999998 6666655543
Q ss_pred cccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-----------------
Q 002623 321 ALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------------- 383 (899)
Q Consensus 321 ~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~----------------- 383 (899)
.+.. .+ .+..++..+ ..+.||||||||.+. ....+.|..+++..
T Consensus 86 ~~~~----~~----~l~~~l~~l---~~~~vl~IDEi~~l~--------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 86 ALEK----PG----DLAAILTNL---EEGDVLFIDEIHRLS--------PVVEEILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred cccC----hH----HHHHHHHhc---ccCCEEEEecHhhcc--------hHHHHHHHHHHHhcceeeeeccCccccceee
Confidence 3221 11 233344333 346799999999986 33444555555422
Q ss_pred ---CeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccC
Q 002623 384 ---ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (899)
Q Consensus 384 ---~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~ 459 (899)
.+.+|++||... .++++|++||. .+.+++|+.+++.+|++..... .++.++++++..++..+.+
T Consensus 147 ~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G--- 214 (328)
T PRK00080 147 DLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRG--- 214 (328)
T ss_pred cCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCC---
Confidence 367889998875 57899999996 6899999999999999987776 6889999999999999976
Q ss_pred CCCChhhHHHHHHHHHHhh
Q 002623 460 GRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 460 ~~~~p~~a~~lld~a~~~~ 478 (899)
.|..+..+++.+....
T Consensus 215 ---~pR~a~~~l~~~~~~a 230 (328)
T PRK00080 215 ---TPRIANRLLRRVRDFA 230 (328)
T ss_pred ---CchHHHHHHHHHHHHH
Confidence 4567788887665443
No 111
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=5.7e-16 Score=180.42 Aligned_cols=204 Identities=21% Similarity=0.204 Sum_probs=156.7
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCcc--------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ-------------- 307 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~-------------- 307 (899)
.-|.++|||.+|+++||++..++.+.+.+......|. ||+||+|||||++|+.+|+.+.+.....
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~ 83 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQA 83 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHH
Confidence 3578999999999999999999999998887777665 9999999999999999999997632100
Q ss_pred -----ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhh
Q 002623 308 -----ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (899)
Q Consensus 308 -----~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (899)
......++++|..+ ..| .+.++++++.+... ++..|++|||+|.|. .+.+|.|+..
T Consensus 84 C~~i~~g~h~D~~eldaas------~~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------~~a~NaLLKt 147 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAAS------NRG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------NTAFNAMLKT 147 (618)
T ss_pred HHHHHcCCCCceeecCccc------ccC--HHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------HHHHHHHHHh
Confidence 00112345554321 111 22355566554432 235699999999998 6678889999
Q ss_pred hcC--CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 380 LGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 380 l~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
|++ +.+.+|++|+... .+.+.+++||..+.|..++.+++...++.++.+ .++.++++++..++..+.+
T Consensus 148 LEEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~G- 217 (618)
T PRK14951 148 LEEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARG- 217 (618)
T ss_pred cccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC-
Confidence 986 4788888887665 466789999999999999999999999888876 7899999999999999865
Q ss_pred cCCCCChhhHHHHHHHHHHh
Q 002623 458 ISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 458 i~~~~~p~~a~~lld~a~~~ 477 (899)
-+.++..++|.+++.
T Consensus 218 -----slR~al~lLdq~ia~ 232 (618)
T PRK14951 218 -----SMRDALSLTDQAIAF 232 (618)
T ss_pred -----CHHHHHHHHHHHHHh
Confidence 355788888887765
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=5.1e-16 Score=186.94 Aligned_cols=203 Identities=19% Similarity=0.168 Sum_probs=155.6
Q ss_pred cHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc--c-----------
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--L----------- 309 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~--l----------- 309 (899)
.|.++|||.+|++|||++..++.+...+...+..| +||+||+|||||++|+.||+.|.+...+.. +
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47799999999999999999999988888777777 689999999999999999999976332111 0
Q ss_pred ---CCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-
Q 002623 310 ---MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (899)
Q Consensus 310 ---~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (899)
....++++|.... .| .+.++.+.+.+.. .+...|+||||+|.|. ...+|.|+.+|++
T Consensus 84 g~~~~~dv~eidaas~------~~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------~~a~NaLLK~LEEp 147 (824)
T PRK07764 84 GGPGSLDVTEIDAASH------GG--VDDARELRERAFFAPAESRYKIFIIDEAHMVT--------PQGFNALLKIVEEP 147 (824)
T ss_pred CCCCCCcEEEeccccc------CC--HHHHHHHHHHHHhchhcCCceEEEEechhhcC--------HHHHHHHHHHHhCC
Confidence 1234555543221 11 1234444433331 2345699999999998 6788999999996
Q ss_pred -CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCC
Q 002623 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (899)
Q Consensus 383 -~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~ 461 (899)
..++||++|+..+ .+-+.|++||+.+.|..++.+++.++|..++++ .++.++++++..++.++.+-
T Consensus 148 P~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGd---- 214 (824)
T PRK07764 148 PEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGS---- 214 (824)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 5888888887665 466899999999999999999999988888876 78999999999999998653
Q ss_pred CChhhHHHHHHHHHHh
Q 002623 462 FLPDKAIDLVDEAAAK 477 (899)
Q Consensus 462 ~~p~~a~~lld~a~~~ 477 (899)
...+..++|..++.
T Consensus 215 --lR~Al~eLEKLia~ 228 (824)
T PRK07764 215 --VRDSLSVLDQLLAG 228 (824)
T ss_pred --HHHHHHHHHHHHhh
Confidence 34677888877654
No 113
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.72 E-value=6.9e-17 Score=176.36 Aligned_cols=222 Identities=22% Similarity=0.361 Sum_probs=154.9
Q ss_pred HhHHHhhccceeccchHHHHHHHHHHH--HHcCCCCC----CCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEec
Q 002623 641 LHLEEELHKRVVGQDPAVKSVAEAIQR--SRAGLSDP----HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (899)
Q Consensus 641 ~~l~~~l~~~i~Gq~~~~~~l~~~l~~--~~~~~~~~----~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (899)
..+.+.|...|+||+++++.+..++.. .+.+...+ ..| .++||+||||||||++|+.||+.+ +.+|+.+|
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~-~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD 82 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CChheeec
Confidence 455667888999999999999999864 22222211 123 489999999999999999999999 89999999
Q ss_pred cccchhhh----hh------------------------------------hhhcCCC-----------------------
Q 002623 715 MSEYMEKH----AV------------------------------------SRLIGAP----------------------- 731 (899)
Q Consensus 715 ~~~~~~~~----~~------------------------------------~~l~g~~----------------------- 731 (899)
++.+.+.. +. ..+.+..
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~ 162 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKK 162 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHH
Confidence 98776421 00 0011100
Q ss_pred ----------------C--CCcccccc------------------------------------------------cchhH
Q 002623 732 ----------------P--GYVGYEEG------------------------------------------------GQLTE 745 (899)
Q Consensus 732 ----------------~--~~~g~~~~------------------------------------------------~~l~~ 745 (899)
. +..+...+ ....+
T Consensus 163 l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ 242 (443)
T PRK05201 163 LREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQE 242 (443)
T ss_pred HHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0 00000000 00112
Q ss_pred HHhh-CCCeEEEEeCCCccC------------hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCC
Q 002623 746 VVRR-RPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDE 812 (899)
Q Consensus 746 ~~~~-~~~~vl~lDEid~l~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~ 812 (899)
++.. ...||||||||||+. ..+|..||.++|.-.+.... ..++..++.||++.-+...
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~~-------- 313 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHVS-------- 313 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCCC--------
Confidence 2333 367999999999975 23999999999965554433 3678889999998765210
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHH----HHHHHHHHhhcccC--CCccCHHHHHH
Q 002623 813 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIV----RLQVSFSKVSWIYS--PWHFNYEMLVK 886 (899)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~----~~~l~~~~~~~~~~--~~~~~~~~l~~ 886 (899)
. ...+-|+|.+||..++.+.+|+.+++..|+ ...++++..-+... ...|+.+++..
T Consensus 314 ---k---------------p~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~ 375 (443)
T PRK05201 314 ---K---------------PSDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRR 375 (443)
T ss_pred ---C---------------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHH
Confidence 0 234679999999999999999999999999 55777776655444 36889999988
Q ss_pred hhccccc
Q 002623 887 FCYLAFT 893 (899)
Q Consensus 887 ~~~~~~~ 893 (899)
++..++.
T Consensus 376 IA~~A~~ 382 (443)
T PRK05201 376 IAEIAYQ 382 (443)
T ss_pred HHHHHHH
Confidence 8887765
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.8e-16 Score=179.84 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=158.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCc--------c------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVP--------Q------ 307 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~-~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p--------~------ 307 (899)
.+|.+++||.+|+++||++..++.+...+...+ ..++||+||+|||||++|+.+|+.+.+.... .
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 688999999999999999999998887665544 4678999999999999999999999763210 0
Q ss_pred ----ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhh
Q 002623 308 ----ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML 380 (899)
Q Consensus 308 ----~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l 380 (899)
......++++|..+ ..| .+.++.+++.+... +...|++|||+|.+. ...++.|+..+
T Consensus 89 ~~i~~~~h~Dv~eidaas------~~~--vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------~~a~naLLk~L 152 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAAS------KTS--VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------KGAFNALLKTL 152 (507)
T ss_pred HHHhcCCCCcEEEeeccC------CCC--HHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------HHHHHHHHHHH
Confidence 01123455555422 111 23456666665432 345699999999997 56788888888
Q ss_pred cC--CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccccc
Q 002623 381 GR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (899)
Q Consensus 381 ~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i 458 (899)
++ ..+.+|++|+... .+.+.+++||..+.|.+++.+++..+++.++++ .++.++++++..++..+.+
T Consensus 153 Eepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~G-- 221 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEG-- 221 (507)
T ss_pred hhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC--
Confidence 86 4788888887664 578899999999999999999999999988887 7899999999999998864
Q ss_pred CCCCChhhHHHHHHHHHHhh
Q 002623 459 SGRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 459 ~~~~~p~~a~~lld~a~~~~ 478 (899)
-+..+..++|.++...
T Consensus 222 ----slR~al~~Ldkai~~~ 237 (507)
T PRK06645 222 ----SARDAVSILDQAASMS 237 (507)
T ss_pred ----CHHHHHHHHHHHHHhh
Confidence 4568889999887653
No 115
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=1.8e-16 Score=169.59 Aligned_cols=180 Identities=19% Similarity=0.315 Sum_probs=126.2
Q ss_pred ceeccchHHHHHHHHHHH-------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC----CCCceEEeccccc
Q 002623 650 RVVGQDPAVKSVAEAIQR-------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEEALVRIDMSEY 718 (899)
Q Consensus 650 ~i~Gq~~~~~~l~~~l~~-------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~~~~~~i~~~~~ 718 (899)
.++|++++++.|...+.. .+.|...+..+ .+++|+||||||||++|+++|+.+.. ....++.++|+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 489999999888765422 23455544333 48999999999999999999998742 2346777777665
Q ss_pred hhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC--------hHHHHHHHHhhcCCeeecCCCceeee
Q 002623 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------SDVFNVFLQILDDGRVTDSQGRTVSF 790 (899)
Q Consensus 719 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~--------~~~~~~Ll~~le~g~~~~~~g~~~~~ 790 (899)
.. .++|.. ...+.+.+..+.++||||||+|.+. .+.++.|++.|+++ .
T Consensus 86 ~~-----~~~g~~--------~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-----------~ 141 (261)
T TIGR02881 86 VG-----EYIGHT--------AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-----------R 141 (261)
T ss_pred hh-----hhccch--------HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-----------C
Confidence 22 222221 1234566777778999999999875 45789999999863 1
Q ss_pred CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHh
Q 002623 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV 870 (899)
Q Consensus 791 ~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~ 870 (899)
.++++|++++... + .. ...++|+|.+||+..|.|++|+.+++.+|++..+....
T Consensus 142 ~~~~vila~~~~~--~-----------------~~------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~- 195 (261)
T TIGR02881 142 NEFVLILAGYSDE--M-----------------DY------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKERE- 195 (261)
T ss_pred CCEEEEecCCcch--h-----------------HH------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcC-
Confidence 3567777765511 0 00 23468999999998999999999999999999987643
Q ss_pred hcccCCCccCHHHHHH
Q 002623 871 SWIYSPWHFNYEMLVK 886 (899)
Q Consensus 871 ~~~~~~~~~~~~~l~~ 886 (899)
..++++++..
T Consensus 196 ------~~l~~~a~~~ 205 (261)
T TIGR02881 196 ------YKLTEEAKWK 205 (261)
T ss_pred ------CccCHHHHHH
Confidence 3355665433
No 116
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.71 E-value=1.4e-16 Score=185.74 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=145.8
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHh-------cCCCCceEEecccc--c
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYM-------FNTEEALVRIDMSE--Y 718 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l-------~~~~~~~~~i~~~~--~ 718 (899)
+++++||+.+++.+..++. +. .|. ++||+||||||||++|+++++.+ +..+.+|+.+||+. +
T Consensus 64 f~~iiGqs~~i~~l~~al~----~~----~~~-~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~ 134 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALC----GP----NPQ-HVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARF 134 (531)
T ss_pred HHHeeCcHHHHHHHHHHHh----CC----CCc-eEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccC
Confidence 4569999999999886542 11 111 69999999999999999999764 22257899999974 2
Q ss_pred hhhhhhhhhcCCC--CCCccccc------ccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecC------C
Q 002623 719 MEKHAVSRLIGAP--PGYVGYEE------GGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS------Q 784 (899)
Q Consensus 719 ~~~~~~~~l~g~~--~~~~g~~~------~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~------~ 784 (899)
.+......++|.. +.|.+... .....+.+..+.+++||||||+.+++..|+.|+++|+++.+.-. .
T Consensus 135 ~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~ 214 (531)
T TIGR02902 135 DERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSE 214 (531)
T ss_pred CccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccccc
Confidence 2222222444432 11221100 01224567788899999999999999999999999998765321 1
Q ss_pred Cce-----------eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC
Q 002623 785 GRT-----------VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (899)
Q Consensus 785 g~~-----------~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~ 853 (899)
+.. -...++++|++|+.. ...++|++++|| ..|.|+||+
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-----------------------------p~~L~paLrsR~-~~I~f~pL~ 264 (531)
T TIGR02902 215 NPNIPSHIHDIFQNGLPADFRLIGATTRN-----------------------------PEEIPPALRSRC-VEIFFRPLL 264 (531)
T ss_pred CcccccchhhhcccCcccceEEEEEecCC-----------------------------cccCChHHhhhh-heeeCCCCC
Confidence 110 012467888777652 356789999999 788999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhcccccccccc
Q 002623 854 RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIRSIV 898 (899)
Q Consensus 854 ~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 898 (899)
.+++..|+++.+++.+ ..++++++..+..++|+.|+++
T Consensus 265 ~eei~~Il~~~a~k~~-------i~is~~al~~I~~y~~n~Rel~ 302 (531)
T TIGR02902 265 DEEIKEIAKNAAEKIG-------INLEKHALELIVKYASNGREAV 302 (531)
T ss_pred HHHHHHHHHHHHHHcC-------CCcCHHHHHHHHHhhhhHHHHH
Confidence 9999999999888754 4678889888888999888764
No 117
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=4.7e-16 Score=170.87 Aligned_cols=182 Identities=26% Similarity=0.304 Sum_probs=134.1
Q ss_pred CCCCCcCchHHHHHHHHHhh-----cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc
Q 002623 253 KLDPVIGRDDEIRRCIQILS-----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~-----~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~ 327 (899)
+|+++||+++.++.+...+. .....+++|+||||||||++|+.+|+.+ +..+..++.+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~~--- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALEK--- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhcC---
Confidence 57889999998888777664 2345679999999999999999999998 55555554332221
Q ss_pred ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--------------------CeEE
Q 002623 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------------ELRC 387 (899)
Q Consensus 328 ~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------------~v~~ 387 (899)
.+. +...+.. ...+.+|||||+|.+. ....+.|..++++. .+.+
T Consensus 69 -~~~----l~~~l~~---~~~~~vl~iDEi~~l~--------~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 -PGD----LAAILTN---LEEGDVLFIDEIHRLS--------PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred -chh----HHHHHHh---cccCCEEEEehHhhhC--------HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 122 2222222 2346799999999997 33455566665432 3678
Q ss_pred EEecChhHHHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 388 IGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 388 I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
|++||... .+++++++||. .+.+.+|+.+++.++++..+.. .++.++++++..+++.+.++ |..
T Consensus 133 i~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~------pR~ 197 (305)
T TIGR00635 133 VGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGT------PRI 197 (305)
T ss_pred EEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCC------cch
Confidence 88888875 67899999997 6799999999999999877775 57889999999999998764 457
Q ss_pred HHHHHHHHHHhh
Q 002623 467 AIDLVDEAAAKL 478 (899)
Q Consensus 467 a~~lld~a~~~~ 478 (899)
+..+++.+...+
T Consensus 198 ~~~ll~~~~~~a 209 (305)
T TIGR00635 198 ANRLLRRVRDFA 209 (305)
T ss_pred HHHHHHHHHHHH
Confidence 777777665443
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=5.4e-16 Score=177.39 Aligned_cols=205 Identities=22% Similarity=0.251 Sum_probs=158.5
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCcc--------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ-------------- 307 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~-------------- 307 (899)
..|.++|||.+|+++||++..++.+...+......|. ||+||+|+|||++|+.+++.+.+.+.+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 3578999999999999999999888888877766665 8999999999999999999997643221
Q ss_pred ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 308 ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 308 ~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
...+..++.+|.+. .+| .+.++.++..+... +...|++|||+|.+. .++++.|+..|+.
T Consensus 82 ~~~h~dv~eldaas------~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp 145 (535)
T PRK08451 82 ENRHIDIIEMDAAS------NRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPP 145 (535)
T ss_pred hcCCCeEEEecccc------ccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcC
Confidence 01223455554221 111 23455555543321 345699999999997 7788999999986
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
..+.+|.+|+... .+.+++++||..+.|.+++.++....++.++.+ .++.++++++..++..+.+
T Consensus 146 ~~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~G------ 210 (535)
T PRK08451 146 SYVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNG------ 210 (535)
T ss_pred CceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4688888887753 678999999999999999999999998888877 7899999999999999864
Q ss_pred ChhhHHHHHHHHHHhh
Q 002623 463 LPDKAIDLVDEAAAKL 478 (899)
Q Consensus 463 ~p~~a~~lld~a~~~~ 478 (899)
-+.++..++|.++...
T Consensus 211 dlR~alnlLdqai~~~ 226 (535)
T PRK08451 211 SLRDTLTLLDQAIIYC 226 (535)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 4568888998887654
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.8e-16 Score=180.31 Aligned_cols=202 Identities=20% Similarity=0.192 Sum_probs=150.7
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~-~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
.+|.++|||.+|+++||++..++.+...+...+ ..++||+||+|||||++|+.+|+.+.+..-+..
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 478999999999999999988887777776644 467789999999999999999999976321100
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHH---hhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~---~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++++|... ..+ .+.++.+.+.+. ..+...|+||||+|.|. ...++.|++.|++
T Consensus 84 ~g~hpDv~eId~a~------~~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------~~a~naLLk~LEEP~ 147 (624)
T PRK14959 84 QGMHVDVVEIDGAS------NRG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------REAFNALLKTLEEPP 147 (624)
T ss_pred cCCCCceEEEeccc------ccC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------HHHHHHHHHHhhccC
Confidence 0122355554321 111 122333333322 22445799999999997 6678889999985
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+++|++||... .+.+.+++||..+.|..++.+++..+|+.++++ .++.++++++..++.++.+
T Consensus 148 ~~~ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~G------ 212 (624)
T PRK14959 148 ARVTFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAG------ 212 (624)
T ss_pred CCEEEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5788888888765 456789999999999999999999999887776 6888999999999999864
Q ss_pred ChhhHHHHHHHHH
Q 002623 463 LPDKAIDLVDEAA 475 (899)
Q Consensus 463 ~p~~a~~lld~a~ 475 (899)
-..+++.+++.+.
T Consensus 213 dlR~Al~lLeqll 225 (624)
T PRK14959 213 SVRDSMSLLGQVL 225 (624)
T ss_pred CHHHHHHHHHHHH
Confidence 2457888888654
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=4.3e-16 Score=180.42 Aligned_cols=204 Identities=20% Similarity=0.220 Sum_probs=156.8
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHhhcCCCccc--c----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQA--L---------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~-~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~--l---------- 309 (899)
..|.++|||.+|+++||++..++.+...+...+.. .+||+||+|||||++|+.+++.+.+...+.. .
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 45889999999999999999999998888766554 4699999999999999999999866322110 0
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 310 --~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
....++++|..+ ..| .+.++.+++.+.. .+...|+||||+|.|. ...++.|++.|++
T Consensus 84 ~g~~~DvlEidaAs------~~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp 147 (709)
T PRK08691 84 AGRYVDLLEIDAAS------NTG--IDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPP 147 (709)
T ss_pred ccCccceEEEeccc------cCC--HHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCC
Confidence 011344554322 111 2345666654432 2345699999999986 5677888888985
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+.+|++|+... .+.+.+++||..+.|..++.+++...|..++++ .++.++++++..+++.+.+
T Consensus 148 ~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~G------ 212 (709)
T PRK08691 148 EHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAG------ 212 (709)
T ss_pred CCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCC------
Confidence 5788898887765 577899999999999999999999999988887 7899999999999999864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-...++.++|.++..
T Consensus 213 slRdAlnLLDqaia~ 227 (709)
T PRK08691 213 SMRDALSLLDQAIAL 227 (709)
T ss_pred CHHHHHHHHHHHHHh
Confidence 356889999988764
No 121
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.70 E-value=4.4e-16 Score=174.73 Aligned_cols=199 Identities=25% Similarity=0.385 Sum_probs=146.6
Q ss_pred CCCCCCcCchHHHHHHHHHhhc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 252 GKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~-------------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
-.++++.|.++.++.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecc
Confidence 3566789999988888775521 235679999999999999999999998 77888887
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhh---c----CCCeEEE
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML---G----RGELRCI 388 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l---~----~~~v~~I 388 (899)
.+.+. ..|.|+....++.+|..+.. ..|+||||||+|.+...+... +....+..+..++ + .+++.+|
T Consensus 189 ~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI 265 (364)
T TIGR01242 189 GSELV--RKYIGEGARLVREIFELAKE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVI 265 (364)
T ss_pred hHHHH--HHhhhHHHHHHHHHHHHHHh-cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 76665 34778877788888887754 458899999999997554322 2233344444443 2 4589999
Q ss_pred EecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChh
Q 002623 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (899)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~ 465 (899)
+|||... .+|+++.+ ||+ .|.|+.|+.+++.+|++........... ..+..++..+.+| .+.
T Consensus 266 ~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-----~~~~~la~~t~g~-----sg~ 330 (364)
T TIGR01242 266 AATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-----VDLEAIAKMTEGA-----SGA 330 (364)
T ss_pred EecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----CCHHHHHHHcCCC-----CHH
Confidence 9999886 68999997 898 7999999999999999877655322111 2355667776654 566
Q ss_pred hHHHHHHHHHHhh
Q 002623 466 KAIDLVDEAAAKL 478 (899)
Q Consensus 466 ~a~~lld~a~~~~ 478 (899)
....++.+|+..+
T Consensus 331 dl~~l~~~A~~~a 343 (364)
T TIGR01242 331 DLKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHHH
Confidence 7778888877655
No 122
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.70 E-value=3.9e-16 Score=192.24 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=132.4
Q ss_pred hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc------------------------
Q 002623 272 SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK------------------------ 327 (899)
Q Consensus 272 ~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~------------------------ 327 (899)
...+++++||+||||||||.||++||... +++++.+.+++++.+..
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 34567899999999999999999999998 99999999998875320
Q ss_pred ---------------ccchH--HHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc-------CC
Q 002623 328 ---------------YRGEF--EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-------RG 383 (899)
Q Consensus 328 ---------------~~g~~--~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-------~~ 383 (899)
+.+.. ..+++.+|+.|++. .||||||||||.+....... -..+.|...|+ ..
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~-SPCIIFIDEIDaL~~~ds~~---ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAM-SPCIIWIPNIHDLNVNESNY---LSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHC-CCeEEEEEchhhcCCCccce---ehHHHHHHHhccccccCCCC
Confidence 01111 22378899999875 59999999999998653211 11334444443 23
Q ss_pred CeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHH--HHHHHHHhccccc
Q 002623 384 ELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDS--ALVEAAILSDRYI 458 (899)
Q Consensus 384 ~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~--~l~~~~~ls~~~i 458 (899)
+|.||||||.++ .+||||+| ||+ .|.|+.|+..++.+++..+... .++...+. .+..++..+.+|
T Consensus 1772 ~VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~Gf- 1841 (2281)
T CHL00206 1772 NILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGS- 1841 (2281)
T ss_pred CEEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCC-
Confidence 699999999997 79999999 998 7999999998888888765432 23333322 256677776655
Q ss_pred CCCCChhhHHHHHHHHHHhhhh
Q 002623 459 SGRFLPDKAIDLVDEAAAKLKM 480 (899)
Q Consensus 459 ~~~~~p~~a~~lld~a~~~~~~ 480 (899)
.+++...++.+|+..+..
T Consensus 1842 ----SGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1842 ----NARDLVALTNEALSISIT 1859 (2281)
T ss_pred ----CHHHHHHHHHHHHHHHHH
Confidence 667888999998876544
No 123
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.69 E-value=3.1e-17 Score=163.54 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=86.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh-
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR- 726 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~- 726 (899)
+.+|+||+.++.++..+. .|.+ ++||+||||||||++|+.+...+.. +-.-..-+....+++..
T Consensus 2 f~dI~GQe~aKrAL~iAA----aG~h-------~lLl~GppGtGKTmlA~~l~~lLP~----l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAA----AGGH-------HLLLIGPPGTGKTMLARRLPSLLPP----LTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHH----HCC---------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHH----cCCC-------CeEEECCCCCCHHHHHHHHHHhCCC----CchHHHhhhccccccccC
Confidence 468999998888876654 4444 6999999999999999999998832 11111111111111111
Q ss_pred -----hcCCCC--------CCcccccc--cchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee
Q 002623 727 -----LIGAPP--------GYVGYEEG--GQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF 790 (899)
Q Consensus 727 -----l~g~~~--------~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~ 790 (899)
++..+| +..+.-.+ ....+.+..+++|||||||+..+++.+++.|++.||+|+++..+ |.++.+
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~ 146 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTY 146 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEE
Confidence 000000 00000001 11245677889999999999999999999999999999887766 666666
Q ss_pred -CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHH
Q 002623 791 -TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQ 856 (899)
Q Consensus 791 -~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~ 856 (899)
.++.+|+|+|++++.... .....+.|......++ .++++-+|++|||..|.+++++.++
T Consensus 147 Pa~f~lv~a~NPcpCG~~~---~~~~~C~Cs~~~~~~Y----~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 147 PARFLLVAAMNPCPCGYYG---DPDNRCRCSPRQIRRY----QSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp B--EEEEEEE-S-------------------------------------------------------
T ss_pred ecccEEEEEeccccccccc---cccccccccccccccc----cccccccccccccccccccccccCC
Confidence 599999999999876533 1123344444444444 5778889999999999999988654
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.9e-15 Score=175.53 Aligned_cols=204 Identities=21% Similarity=0.216 Sum_probs=157.1
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCcc--cc----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ--AL---------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~--~l---------- 309 (899)
..|.+++||.+|+++||++..++.+...+...+..|. ||+||+|+|||++|+.+|+.+.+...+. ..
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~ 83 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 3588999999999999999999998888877666664 8999999999999999999996532111 00
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 310 --~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
....++.+|.+. .. ..+.++.+++.+... ++..|+||||+|.+. ..++|.|+..+++
T Consensus 84 ~~~~~d~~ei~~~~------~~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------~~a~naLLK~LEepp 147 (527)
T PRK14969 84 SGRFVDLIEVDAAS------NT--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------KSAFNAMLKTLEEPP 147 (527)
T ss_pred cCCCCceeEeeccc------cC--CHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------HHHHHHHHHHHhCCC
Confidence 011345554321 11 123456666655432 345699999999997 5678889999986
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+.+|++|+... .+.+.+++||..+.|..++.++....+..++++ +++.++++++..++..+.+
T Consensus 148 ~~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~G------ 212 (527)
T PRK14969 148 EHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAG------ 212 (527)
T ss_pred CCEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5788898887765 456779999999999999999999888888776 6889999999999999864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..++.+++.+++.
T Consensus 213 slr~al~lldqai~~ 227 (527)
T PRK14969 213 SMRDALSLLDQAIAY 227 (527)
T ss_pred CHHHHHHHHHHHHHh
Confidence 356889999988765
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.69 E-value=4.6e-16 Score=171.83 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=140.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEE-EcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccc
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVL-IGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA 321 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL-~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 321 (899)
..|.+++||.+|++++|++...+.+...+......|++| +||||+|||++++++++.+ +.+++.++++.
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~ 78 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD 78 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc
Confidence 368899999999999999999888888887766666666 8999999999999999987 66788888765
Q ss_pred ccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhHHHhh
Q 002623 322 LIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKY 399 (899)
Q Consensus 322 l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~ 399 (899)
. . .......+............+.+|+|||+|.+.. .+.++.|+.+++. +++++|++||...
T Consensus 79 -~--~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~---- 142 (316)
T PHA02544 79 -C--R--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN---- 142 (316)
T ss_pred -c--c--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh----
Confidence 1 1 1222222322222221123567999999998831 3456778887774 5778899888664
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh---hhhCCCCCHHHHHHHHHhcc
Q 002623 400 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYE---LHHGVRISDSALVEAAILSD 455 (899)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~---~~~~~~i~~~~l~~~~~ls~ 455 (899)
.+.+++++||..+.|+.|+.+++..+++.+.+.+. ...++.++++++..++..+.
T Consensus 143 -~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 -GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred -hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 57899999999999999999999988887666543 23688999999988887664
No 126
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.1e-15 Score=178.72 Aligned_cols=204 Identities=20% Similarity=0.224 Sum_probs=157.5
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
..|..++||.+|++++|++..++.+.+.+......| +||+||+|+|||++|+.+|+.+.+...+..
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~ 83 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAIT 83 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHh
Confidence 357789999999999999999999998887766666 688999999999999999999976432211
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG- 383 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~- 383 (899)
.....++.+|.++ .. ..+.++.+.+.+.. .+...|++|||+|.|. ..++|.|+..++..
T Consensus 84 ~g~~~dv~eidaas------~~--~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp 147 (559)
T PRK05563 84 NGSLMDVIEIDAAS------NN--GVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPP 147 (559)
T ss_pred cCCCCCeEEeeccc------cC--CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCC
Confidence 1233456665432 11 12345566666553 2346799999999997 56788888889864
Q ss_pred -CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 384 -ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 384 -~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
.+++|.+|+... .+.+.+++||+.+.|..|+.++....++.++++ .++.++++++..++..+.+
T Consensus 148 ~~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G------ 212 (559)
T PRK05563 148 AHVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEG------ 212 (559)
T ss_pred CCeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 677888877654 578999999999999999999999999888876 7899999999999998864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..+..+++.+.+.
T Consensus 213 ~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 213 GMRDALSILDQAISF 227 (559)
T ss_pred CHHHHHHHHHHHHHh
Confidence 345788888887664
No 127
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.1e-16 Score=162.07 Aligned_cols=237 Identities=24% Similarity=0.329 Sum_probs=158.2
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcCCCC--C----CCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEe
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD--P----HRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI 713 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~--~----~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i 713 (899)
...+...|...|+||+.+++.|.-++......+.. . .-...++||.||+|+|||.||+.||+.+ +.||..-
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiA 128 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIA 128 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeec
Confidence 34667778889999999999887766432211111 1 0111379999999999999999999999 8999998
Q ss_pred ccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCC-------CeEEEEeCCCccC--------------hHHHHHHH
Q 002623 714 DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRP-------YAVILFDEIEKAH--------------SDVFNVFL 772 (899)
Q Consensus 714 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~-------~~vl~lDEid~l~--------------~~~~~~Ll 772 (899)
|+..+.+ .||+|.+....+...+..+. .||++|||||+.. ..+|.+||
T Consensus 129 DATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALL 197 (408)
T COG1219 129 DATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALL 197 (408)
T ss_pred cccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHH
Confidence 9888743 57888777777777776554 5899999999975 24999999
Q ss_pred HhhcCCeeec-CC-Cce--------eeeCCEEEEEecCC-ChhhhhccC-----CCCCCCc------chHHHHHHHHH--
Q 002623 773 QILDDGRVTD-SQ-GRT--------VSFTNTVIIMTSNV-GSQYILNMD-----DETFPKE------TAYETIKQRVM-- 828 (899)
Q Consensus 773 ~~le~g~~~~-~~-g~~--------~~~~~~iiI~ttN~-~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~-- 828 (899)
.+||.-.... +. |++ ++.+|..||+..-+ |.+.+.... -|+.... ....++...+.
T Consensus 198 KiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepe 277 (408)
T COG1219 198 KIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPE 277 (408)
T ss_pred HHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChH
Confidence 9998433332 22 553 44566666665443 233332211 1221111 11112222221
Q ss_pred HHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH----HHHHHHhhcccC--CCccCHHHHHHhhcc
Q 002623 829 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL----QVSFSKVSWIYS--PWHFNYEMLVKFCYL 890 (899)
Q Consensus 829 ~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~----~l~~~~~~~~~~--~~~~~~~~l~~~~~~ 890 (899)
+-++-.+-|+|.+|+..+..+.+|+.+++.+|+.. .++++..=+..+ ...|++++|....+.
T Consensus 278 DLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~ 345 (408)
T COG1219 278 DLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKK 345 (408)
T ss_pred HHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHH
Confidence 33456788999999999999999999999998864 344444433333 467889988776653
No 128
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.68 E-value=1.1e-16 Score=157.11 Aligned_cols=191 Identities=17% Similarity=0.247 Sum_probs=149.0
Q ss_pred hhcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 240 KYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 240 ~~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
+|..+|.++|||..+.++||.++.+.++.-+...+..+|++|.||||+||||.+.+||+++..... .-.++++|.
T Consensus 12 ~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLELNA 86 (333)
T KOG0991|consen 12 KYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLELNA 86 (333)
T ss_pred cccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhhccC
Confidence 455679999999999999999999999988888888899999999999999999999999854221 234677776
Q ss_pred ccccccccccc--hHHHHHHHHHHHHHhh--CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc--CCCeEEEEecCh
Q 002623 320 GALIAGAKYRG--EFEDRLKAVLKEVTES--EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTL 393 (899)
Q Consensus 320 ~~l~~~~~~~g--~~~~~l~~l~~~~~~~--~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~~~v~~I~at~~ 393 (899)
|+- +| -+..+++.+...-..- +..-|+++||+|.+. ..++..|++.|+ ....++..+||.
T Consensus 87 Sde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT--------~gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 87 SDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT--------AGAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred ccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh--------hHHHHHHHHHHHHHcccchhhhhhcc
Confidence 542 33 2233333222111111 234599999999998 668888999998 667889999998
Q ss_pred hHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccccc
Q 002623 394 DEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYI 458 (899)
Q Consensus 394 ~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i 458 (899)
.+ .+-..+.+||..+.+...+..+...-+..+.+. +++.++++.+++++-.+++.+
T Consensus 153 s~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~----Ekv~yt~dgLeaiifta~GDM 208 (333)
T KOG0991|consen 153 SE-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAKA----EKVNYTDDGLEAIIFTAQGDM 208 (333)
T ss_pred hh-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHH----hCCCCCcchHHHhhhhccchH
Confidence 87 567889999999999999998877766666665 899999999999999887743
No 129
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.68 E-value=1.2e-14 Score=178.31 Aligned_cols=183 Identities=21% Similarity=0.287 Sum_probs=129.5
Q ss_pred CCCCcCchHHHHHHHHHhhcC---------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc
Q 002623 254 LDPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 324 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~~---------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~ 324 (899)
...++|++..++.+...+.+. +..++||+||||||||++|++|++.+... +.+++.+||+.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhhh
Confidence 456899999988888877532 11357999999999999999999988432 45788999887632
Q ss_pred c----------ccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCC----------
Q 002623 325 G----------AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGE---------- 384 (899)
Q Consensus 325 ~----------~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~---------- 384 (899)
. ..|.|..+. ..+.+.....+.+||||||++.+. .++++.|.+++++|.
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~--------~~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAH--------PDVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred hhhHHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCC--------HHHHHHHHHHHhhCceecCCceEEe
Confidence 1 123332211 122333333456899999999887 778999999997652
Q ss_pred ---eEEEEecChh--HHH------------h------hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhh----
Q 002623 385 ---LRCIGATTLD--EYR------------K------YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL---- 436 (899)
Q Consensus 385 ---v~~I~at~~~--~~~------------~------~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~---- 436 (899)
.++|+|||.. .+. . .....|+|.+|++ .+.|.+++.+++..|++..+..+..
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2388888862 111 0 1124689999997 6788888999999999887776542
Q ss_pred -hhCCCCCHHHHHHHHHhc
Q 002623 437 -HHGVRISDSALVEAAILS 454 (899)
Q Consensus 437 -~~~~~i~~~~l~~~~~ls 454 (899)
...+.++++++..++...
T Consensus 789 ~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 789 RGYEIHISDEALKLLSENG 807 (857)
T ss_pred CCCcCcCCHHHHHHHHHcC
Confidence 124578999999888754
No 130
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.68 E-value=4e-16 Score=170.32 Aligned_cols=221 Identities=27% Similarity=0.401 Sum_probs=151.6
Q ss_pred hHHHhhccceeccchHHHHHHHHHHHH--HcCCC----CCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 002623 642 HLEEELHKRVVGQDPAVKSVAEAIQRS--RAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (899)
Q Consensus 642 ~l~~~l~~~i~Gq~~~~~~l~~~l~~~--~~~~~----~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (899)
.+.+.|.+.|+||+++++.+..++... +.+.. ....| .++||+||||||||++|++||+.+ +.+|+.+|+
T Consensus 5 ~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vda 80 (441)
T TIGR00390 5 EIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 80 (441)
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeec
Confidence 455677889999999999999988753 22221 12223 479999999999999999999999 899999998
Q ss_pred ccchhh-----h--h-hhh--------------------------------hcCCCCCC---------------------
Q 002623 716 SEYMEK-----H--A-VSR--------------------------------LIGAPPGY--------------------- 734 (899)
Q Consensus 716 ~~~~~~-----~--~-~~~--------------------------------l~g~~~~~--------------------- 734 (899)
..+.+. . . +.. ++......
T Consensus 81 t~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l 160 (441)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKL 160 (441)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHH
Confidence 766431 0 0 001 11000000
Q ss_pred ---------------------c------ccccc------------------------------------------cchhH
Q 002623 735 ---------------------V------GYEEG------------------------------------------GQLTE 745 (899)
Q Consensus 735 ---------------------~------g~~~~------------------------------------------~~l~~ 745 (899)
. |.... ....+
T Consensus 161 ~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~ 240 (441)
T TIGR00390 161 REGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQE 240 (441)
T ss_pred hcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0 00000 00011
Q ss_pred HHh-hCCCeEEEEeCCCccCh------------HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCC
Q 002623 746 VVR-RRPYAVILFDEIEKAHS------------DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDE 812 (899)
Q Consensus 746 ~~~-~~~~~vl~lDEid~l~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~ 812 (899)
+++ ....||||||||||+.. .+|+.||.++|...+.... ..++..++.||++.-+...
T Consensus 241 a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~~-------- 311 (441)
T TIGR00390 241 AIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQLA-------- 311 (441)
T ss_pred HHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCCC--------
Confidence 222 24679999999999752 3999999999965554433 4688899999998766210
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHH----HHHHHHHHhhcccC--CCccCHHHHHH
Q 002623 813 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIV----RLQVSFSKVSWIYS--PWHFNYEMLVK 886 (899)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~----~~~l~~~~~~~~~~--~~~~~~~~l~~ 886 (899)
. ...+-|+|.+||..++.+.+|+.+++..|+ ...++++..-+... ...|+.+++..
T Consensus 312 ---k---------------p~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~ 373 (441)
T TIGR00390 312 ---K---------------PSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKR 373 (441)
T ss_pred ---C---------------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHH
Confidence 0 334789999999999999999999999998 45666666544444 36889999888
Q ss_pred hhccccc
Q 002623 887 FCYLAFT 893 (899)
Q Consensus 887 ~~~~~~~ 893 (899)
++..++.
T Consensus 374 IA~~A~~ 380 (441)
T TIGR00390 374 IAELAYN 380 (441)
T ss_pred HHHHHHH
Confidence 8877664
No 131
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=159.35 Aligned_cols=197 Identities=22% Similarity=0.338 Sum_probs=148.2
Q ss_pred CCCCCcCchHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l-------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
+..++-|..+.|+.+-+.. .--+++.+|||||||||||.+|+++|++- +..|+.+--
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 4566777777666665543 23466889999999999999999999997 889999988
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhh-------cCCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML-------GRGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l-------~~~~v~~I~ 389 (899)
|+++ .+|+|+....++++|.-++. ...||+|+||||.+-+++-.. +..+++..++.++ .+|++.++.
T Consensus 245 selv--qkyvgegarmvrelf~mart-kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMART-KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhcc-cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 8888 56999999999999998765 457999999999998776433 4566666666655 378999999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
+||.++ .+||+|.| |++ .|+|..|+.+-+..|++...+.+....++ -.+.++.+|..- ....
T Consensus 322 atnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdi-----r~ellarlcpns-----tgae 386 (435)
T KOG0729|consen 322 ATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDI-----RFELLARLCPNS-----TGAE 386 (435)
T ss_pred ecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccch-----hHHHHHhhCCCC-----cchH
Confidence 999997 79999999 998 89999999999999987665543222222 234556666432 2234
Q ss_pred HHHHHHHHHHh
Q 002623 467 AIDLVDEAAAK 477 (899)
Q Consensus 467 a~~lld~a~~~ 477 (899)
...++-+|...
T Consensus 387 irsvcteagmf 397 (435)
T KOG0729|consen 387 IRSVCTEAGMF 397 (435)
T ss_pred HHHHHHHhhHH
Confidence 45555555543
No 132
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.2e-15 Score=175.17 Aligned_cols=204 Identities=18% Similarity=0.236 Sum_probs=154.1
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHhhcCCCcc--cc----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--AL---------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~-~~LL~Gp~G~GKT~la~~la~~l~~~~~p~--~l---------- 309 (899)
..|.+++||..|++++|++..++.+...+...... .+||+||+|+|||++|+.+|+.+.+..... ..
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 46899999999999999999999998887665444 478999999999999999999997633111 00
Q ss_pred --CCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 310 --MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 310 --~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
....+++++.+. ..| .+.++.++..+.. .++..|++|||+|.|. ..+++.|+..|++
T Consensus 84 ~~~h~DiieIdaas------~ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------~~A~NaLLKtLEEPp 147 (605)
T PRK05896 84 TNQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------TSAWNALLKTLEEPP 147 (605)
T ss_pred cCCCCceEEecccc------ccC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------HHHHHHHHHHHHhCC
Confidence 112455554322 111 1234555544432 2345699999999997 5578889999985
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+.+++|++|+... .+.+.+++||+.+.|.+|+.+++...++..+.+ .++.++++++..++.++.+
T Consensus 148 ~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~G------ 212 (605)
T PRK05896 148 KHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADG------ 212 (605)
T ss_pred CcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4678888877653 678999999999999999999999999888876 6888999999999999864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..+..+++..+..
T Consensus 213 dlR~AlnlLekL~~y 227 (605)
T PRK05896 213 SLRDGLSILDQLSTF 227 (605)
T ss_pred cHHHHHHHHHHHHhh
Confidence 355788888876554
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.68 E-value=3.9e-16 Score=160.23 Aligned_cols=163 Identities=25% Similarity=0.364 Sum_probs=117.6
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC---CceEEeccccchhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE---EALVRIDMSEYMEKHAV 724 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~---~~~~~i~~~~~~~~~~~ 724 (899)
++++.||+.+++.|.+++.. +- . | ++|||||||||||+.|+++|+.+++.. ..+...+.+...+..-+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-~~-l-----p--~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv 105 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR-RI-L-----P--HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV 105 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh-cC-C-----c--eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch
Confidence 46799999999999999875 21 1 1 699999999999999999999997622 11222333333222100
Q ss_pred -------hhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 725 -------SRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 725 -------~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
+.+.....+..++ ...++.|++|||.|.|..+.|++|.+.||+ ....++||+
T Consensus 106 r~Kik~fakl~~~~~~~~~~----------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-----------~s~~trFiL 164 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSDGY----------PCPPFKIIILDECDSMTSDAQAALRRTMED-----------FSRTTRFIL 164 (346)
T ss_pred hhhhcCHHHHhhccccccCC----------CCCcceEEEEechhhhhHHHHHHHHHHHhc-----------cccceEEEE
Confidence 0000000000000 012458999999999999999999999997 335789999
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhh
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVS 871 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~ 871 (899)
.||. ..++.+.+.+|| ..+.|+++..+++...++....+.+..
T Consensus 165 Icny------------------------------lsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~ 207 (346)
T KOG0989|consen 165 ICNY------------------------------LSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVD 207 (346)
T ss_pred EcCC------------------------------hhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCC
Confidence 9998 678888999999 999999999999888888877766633
No 134
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.7e-16 Score=155.59 Aligned_cols=195 Identities=25% Similarity=0.385 Sum_probs=141.8
Q ss_pred HHhhccceeccchHHHHHHHHHHH--------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 002623 644 EEELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (899)
Q Consensus 644 ~~~l~~~i~Gq~~~~~~l~~~l~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (899)
.+.-.+.+-|.+..++.+.+.+.. -..|+..|. .+|||||||||||.+|+++|++. .+.|+++..
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK----GvlLygppgtGktLlaraVahht---~c~firvsg 214 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK----GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSG 214 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc----ceEEecCCCCchhHHHHHHHhhc---ceEEEEech
Confidence 333456688889889988888742 133555443 39999999999999999999988 788999999
Q ss_pred ccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCC
Q 002623 716 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQ 784 (899)
Q Consensus 716 ~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~ 784 (899)
+++.. +++|.-.. ..+.++-..+++.++|+|.||||+.. .++|..+|.++..- |
T Consensus 215 selvq-----k~igegsr-----mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql---d-- 279 (404)
T KOG0728|consen 215 SELVQ-----KYIGEGSR-----MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL---D-- 279 (404)
T ss_pred HHHHH-----HHhhhhHH-----HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc---c--
Confidence 98844 44554222 22466777788888999999999864 45888877777531 1
Q ss_pred CceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHH
Q 002623 785 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVR 862 (899)
Q Consensus 785 g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~ 862 (899)
|- -...|+.+|++||. -..++|+|+ +|+|..|.|||++.+...+|++
T Consensus 280 gf-eatknikvimatnr------------------------------idild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 280 GF-EATKNIKVIMATNR------------------------------IDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred cc-ccccceEEEEeccc------------------------------cccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 10 12368999999998 567788888 8999999999999998888888
Q ss_pred HHHHHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 863 LQVSFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 863 ~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
..-.+++. .......+.+...+...|..+
T Consensus 329 ihsrkmnl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 329 IHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred HhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 87776653 222234455555566666543
No 135
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.9e-15 Score=176.66 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=157.0
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHhhcCCC-----cc-----c---
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDV-----PQ-----A--- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~-~~LL~Gp~G~GKT~la~~la~~l~~~~~-----p~-----~--- 308 (899)
+.|.++|||.+|+++||++..++.+.+.+...+.. .+||+||+|||||++|+.+|+.+.+... |. .
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 56899999999999999999999999988776655 5899999999999999999999976321 10 0
Q ss_pred ------cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhh
Q 002623 309 ------LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (899)
Q Consensus 309 ------l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (899)
.....+++++..+ ..| .+.++.+++.+.. .++..|++|||+|.+. ...+|.|+..
T Consensus 92 C~~i~~g~h~Dv~e~~a~s------~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~a~naLLKt 155 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAAS------HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TAAFNALLKT 155 (598)
T ss_pred HHHHhcCCCCceEEecccc------cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HHHHHHHHHH
Confidence 0122345554432 111 2345666665543 2345699999999997 5678889999
Q ss_pred hcC--CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 380 LGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 380 l~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
|++ +.+.+|++|+... .+.+.+++||+.+.|..|+.+++...++.++++ .++.++++++..++..+.+.
T Consensus 156 LEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gd 226 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGS 226 (598)
T ss_pred HHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 986 4788888887654 466889999999999999999999999888876 78999999999999998753
Q ss_pred cCCCCChhhHHHHHHHHHHh
Q 002623 458 ISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 458 i~~~~~p~~a~~lld~a~~~ 477 (899)
+..+..+++.++..
T Consensus 227 ------lr~al~~Ldkli~~ 240 (598)
T PRK09111 227 ------VRDGLSLLDQAIAH 240 (598)
T ss_pred ------HHHHHHHHHHHHhh
Confidence 55788888887654
No 136
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.2e-16 Score=176.90 Aligned_cols=220 Identities=23% Similarity=0.367 Sum_probs=156.2
Q ss_pred CCCCCCcCchHH---HHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 252 GKLDPVIGRDDE---IRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 252 ~~l~~iiG~~~~---i~~~~~~l~~---------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.+|.++.|.++. +..+++.|+. +-+..++|+||||||||.||+++|.+. +.|++++.-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 478899998874 5555555543 345789999999999999999999998 999999998
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhh---c----CCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML---G----RGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l---~----~~~v~~I~ 389 (899)
|+++ ..|+|--..+++++|.++++. .|||+||||||.+...+... +....-..|.++| + +..|.+|+
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk~-aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKKN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhcc-CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 8887 347777777899999999874 58999999999998666432 3333333444444 3 23799999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhh
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~ 466 (899)
+||+++ -+||+|.| ||+ .|.++.|+...+.+|++...+.......+ + +..+++.+.+| ....
T Consensus 294 aTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V--d---l~~iAr~tpGf-----sGAd 358 (596)
T COG0465 294 ATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV--D---LKKIARGTPGF-----SGAD 358 (596)
T ss_pred cCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC--C---HHHHhhhCCCc-----ccch
Confidence 999998 58999999 998 89999999999999999666553222222 2 23356666654 3446
Q ss_pred HHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHH
Q 002623 467 AIDLVDEAAAKLKMEITSKPTALDEINRSVLKLE 500 (899)
Q Consensus 467 a~~lld~a~~~~~~~~~~~~~~l~~~~~~i~~~~ 500 (899)
...++.+|+-... +.....-...++++.+.++-
T Consensus 359 L~nl~NEAal~aa-r~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 359 LANLLNEAALLAA-RRNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred HhhhHHHHHHHHH-HhcCeeEeccchHHHHHHHh
Confidence 7777877764432 22333333444444444333
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.67 E-value=3.3e-16 Score=176.27 Aligned_cols=194 Identities=25% Similarity=0.353 Sum_probs=137.7
Q ss_pred HhhccceeccchHHHHHHHHHHHH--------HcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 002623 645 EELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (899)
Q Consensus 645 ~~l~~~i~Gq~~~~~~l~~~l~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (899)
+..+++|.|.++.++.+...+... ..|...|. .+||+||||||||++|+++|+.+ +.+|+.++++
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~----gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~ 199 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPK----GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGS 199 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCC----ceEEECCCCCChHHHHHHHHHHh---CCCEEEeehH
Confidence 344678999999999999987431 22333332 59999999999999999999998 6789999998
Q ss_pred cchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCcc-----------ChHHHHHHHHhhcCCeeecCCC
Q 002623 717 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQG 785 (899)
Q Consensus 717 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g 785 (899)
++... ++|..... .+.++...+...++||||||+|.+ +++++..|++++..-.-..
T Consensus 200 ~l~~~-----~~g~~~~~-----i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~--- 266 (389)
T PRK03992 200 ELVQK-----FIGEGARL-----VRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD--- 266 (389)
T ss_pred HHhHh-----hccchHHH-----HHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC---
Confidence 77432 23322111 123455555667799999999987 3456666666664311000
Q ss_pred ceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHH
Q 002623 786 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 786 ~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
...+++||+|||. ...++++++ +|||..|.|++|+.++..+|++.
T Consensus 267 ---~~~~v~VI~aTn~------------------------------~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 267 ---PRGNVKIIAATNR------------------------------IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred ---CCCCEEEEEecCC------------------------------hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHH
Confidence 1247899999998 566788888 49999999999999999999998
Q ss_pred HHHHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 864 QVSFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 864 ~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
++.++.. .+.....+++...+..+|..+
T Consensus 314 ~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA 348 (389)
T PRK03992 314 HTRKMNLADDVDLEELAELTEGASGADLKAICTEA 348 (389)
T ss_pred HhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 8876542 222234567777777777643
No 138
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.9e-16 Score=174.03 Aligned_cols=184 Identities=20% Similarity=0.332 Sum_probs=123.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhh--
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS-- 725 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~-- 725 (899)
+++++||+.++..|..++...+.+. .+||+||+|||||++|+.+|+.++....+- ...|.....-..+.
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~h--------a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-~~pCg~C~sC~~i~~g 87 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGH--------AYIFFGPRGVGKTTIARILAKRLNCENPIG-NEPCNECTSCLEITKG 87 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCe--------EEEEECCCCCCHHHHHHHHHHhcCcccccC-ccccCCCcHHHHHHcc
Confidence 5679999999999988876432110 389999999999999999999985421100 01111111000000
Q ss_pred ---hhcCCC-CCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 726 ---RLIGAP-PGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 726 ---~l~g~~-~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
.++--. ....|....+.+.+.+. ...+.|+||||+|.++.+.+|+||..||+ ...+++||+
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------Pp~~viFIL 156 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------PPAHIVFIL 156 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------CCCceEEEe
Confidence 000000 01122222233333333 23467999999999999999999999987 345789999
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCC
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPW 877 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~ 877 (899)
+|+. ...+.+.+++|| +++.|.+++.+++.+.+++.+.+.+ .
T Consensus 157 aTte------------------------------~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg-------i 198 (484)
T PRK14956 157 ATTE------------------------------FHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN-------V 198 (484)
T ss_pred ecCC------------------------------hhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC-------C
Confidence 8887 567889999999 8999999999999988888777543 4
Q ss_pred ccCHHHHHHhhc
Q 002623 878 HFNYEMLVKFCY 889 (899)
Q Consensus 878 ~~~~~~l~~~~~ 889 (899)
.++++++..++.
T Consensus 199 ~~e~eAL~~Ia~ 210 (484)
T PRK14956 199 QYDQEGLFWIAK 210 (484)
T ss_pred CCCHHHHHHHHH
Confidence 455666544433
No 139
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.4e-15 Score=176.15 Aligned_cols=203 Identities=20% Similarity=0.255 Sum_probs=154.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc---c--------C
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA---L--------M 310 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~---l--------~ 310 (899)
..|.+++||..|++++|++..++.+...+......| +||+||+|+|||++|+.+|+.+.+...... . .
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 468999999999999999999999888887766555 489999999999999999999976331110 0 1
Q ss_pred CCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--Ce
Q 002623 311 NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--EL 385 (899)
Q Consensus 311 ~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v 385 (899)
...++.++.. ...| .+.++.+.+.+.. .++..|++|||+|.|. ..+++.|+..|+.. .+
T Consensus 86 ~~Dvieidaa------sn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------~~A~NALLKtLEEPP~~t 149 (725)
T PRK07133 86 SLDIIEMDAA------SNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------KSAFNALLKTLEEPPKHV 149 (725)
T ss_pred CCcEEEEecc------ccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------HHHHHHHHHHhhcCCCce
Confidence 1223333321 1111 2335566665553 2345699999999997 56788899999864 67
Q ss_pred EEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChh
Q 002623 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (899)
Q Consensus 386 ~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~ 465 (899)
++|++|+... .+.+.+++||+.+.|.+|+.+++...++..+++ .++.++++++..++.++.+ -+.
T Consensus 150 ifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~G------slR 214 (725)
T PRK07133 150 IFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSG------SLR 214 (725)
T ss_pred EEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHH
Confidence 8888887654 678899999999999999999999999888877 6889999999999999874 345
Q ss_pred hHHHHHHHHHH
Q 002623 466 KAIDLVDEAAA 476 (899)
Q Consensus 466 ~a~~lld~a~~ 476 (899)
.|..+++..+.
T Consensus 215 ~AlslLekl~~ 225 (725)
T PRK07133 215 DALSIAEQVSI 225 (725)
T ss_pred HHHHHHHHHHH
Confidence 77888887654
No 140
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.4e-15 Score=173.15 Aligned_cols=201 Identities=23% Similarity=0.250 Sum_probs=152.6
Q ss_pred HHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCC-Cccc------------cC
Q 002623 245 LTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGD-VPQA------------LM 310 (899)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~-~p~~------------l~ 310 (899)
|.++|||.+|++++|++..++.+...+......|. ||+||||||||++|+++|+.+.+.. .+.. ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 56899999999999999998888888877776666 9999999999999999999997521 1100 12
Q ss_pred CCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCe
Q 002623 311 NRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GEL 385 (899)
Q Consensus 311 ~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v 385 (899)
...++.++.+. ..+ .+.++.+...+.. .+.+.|++|||+|.+. .+.++.|+..+++ ..+
T Consensus 84 h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 84 HPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPEHV 147 (504)
T ss_pred CCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCCCE
Confidence 23466666431 111 2234444444432 2346699999999886 5677788888876 467
Q ss_pred EEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChh
Q 002623 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPD 465 (899)
Q Consensus 386 ~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~ 465 (899)
++|.+|+... .+.+.+.+||..+.|.+|+.++....++.++++ .++.++++++..++..+.+. +.
T Consensus 148 ~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gd------lR 212 (504)
T PRK14963 148 IFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGA------MR 212 (504)
T ss_pred EEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HH
Confidence 7788877664 678999999999999999999999999988887 78999999999999999753 45
Q ss_pred hHHHHHHHHHH
Q 002623 466 KAIDLVDEAAA 476 (899)
Q Consensus 466 ~a~~lld~a~~ 476 (899)
++..+++..+.
T Consensus 213 ~aln~Lekl~~ 223 (504)
T PRK14963 213 DAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHh
Confidence 77778877654
No 141
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.3e-17 Score=163.99 Aligned_cols=171 Identities=25% Similarity=0.389 Sum_probs=134.5
Q ss_pred CCCCCCcCchHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 252 GKLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l-------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
-++.++-|.+..++.+.+.. .-.++..++|||+||||||.||+++|+.- ...|+++-
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlRvv 251 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SATFLRVV 251 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------chhhhhhh
Confidence 34566677777666666543 34677899999999999999999999986 78888888
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCC---CchHHHHHHHhhhh-------cCCCeEEE
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGAT---NGAMDAGNLLKPML-------GRGELRCI 388 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~---~~~~~~~~~L~~~l-------~~~~v~~I 388 (899)
-++++ .+|.|+-...++++|.-+.. ..|+|+||||||.+-..+-. .|..+++..++.+| .+|+|.+|
T Consensus 252 GseLi--QkylGdGpklvRqlF~vA~e-~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvi 328 (440)
T KOG0726|consen 252 GSELI--QKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 328 (440)
T ss_pred hHHHH--HHHhccchHHHHHHHHHHHh-cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEE
Confidence 88888 45889988899999998776 46899999999998755432 35567777666666 37899999
Q ss_pred EecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCC
Q 002623 389 GATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGV 440 (899)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~ 440 (899)
.|||..+ .+||+|.| |++ .|.|+.|+......|+...-.++.....+
T Consensus 329 mATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dV 378 (440)
T KOG0726|consen 329 MATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDV 378 (440)
T ss_pred Eeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccc
Confidence 9999998 79999999 998 89999999999888876544443333333
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.8e-15 Score=177.85 Aligned_cols=204 Identities=21% Similarity=0.220 Sum_probs=156.8
Q ss_pred cHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCcc--------------c
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ--------------A 308 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~--------------~ 308 (899)
-|.++|||.+|+++||++..++.+...+......| +||+||+|+|||++|+.+++.+.+...+. .
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 47889999999999999999988888887766655 58999999999999999999997632110 0
Q ss_pred cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--C
Q 002623 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--G 383 (899)
Q Consensus 309 l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~ 383 (899)
.....++++|..+ ..| .+.++.+.+.+.. .+...|++|||+|.|. ..++|.|+..|++ +
T Consensus 85 g~~~d~~eid~~s------~~~--v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp~ 148 (576)
T PRK14965 85 GRSVDVFEIDGAS------NTG--VDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPPP 148 (576)
T ss_pred CCCCCeeeeeccC------ccC--HHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCCC
Confidence 0122345554322 111 2235555555542 2345699999999997 6788999999986 4
Q ss_pred CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCC
Q 002623 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFL 463 (899)
Q Consensus 384 ~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~ 463 (899)
++.+|++||... .+.+.+++||..+.|..++.+++...+..++++ .++.++++++..++..+.+ -
T Consensus 149 ~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G------~ 213 (576)
T PRK14965 149 HVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDG------S 213 (576)
T ss_pred CeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCC------C
Confidence 788888887764 577899999999999999999999888888877 7899999999999999975 2
Q ss_pred hhhHHHHHHHHHHhh
Q 002623 464 PDKAIDLVDEAAAKL 478 (899)
Q Consensus 464 p~~a~~lld~a~~~~ 478 (899)
..+++.++|.+++..
T Consensus 214 lr~al~~Ldqliay~ 228 (576)
T PRK14965 214 MRDSLSTLDQVLAFC 228 (576)
T ss_pred HHHHHHHHHHHHHhc
Confidence 357888898877664
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.66 E-value=5.8e-16 Score=173.23 Aligned_cols=194 Identities=25% Similarity=0.399 Sum_probs=137.0
Q ss_pred hhccceeccchHHHHHHHHHHHH--------HcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecccc
Q 002623 646 ELHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (899)
Q Consensus 646 ~l~~~i~Gq~~~~~~l~~~l~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (899)
.-|.+|.|.+..++.|...+... ..|...|+ .+||+||||||||++|+++|+.+ +.+|+.+.+++
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pk----gvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~ 214 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPR----GVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSE 214 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCc----eEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHH
Confidence 34778999999999999988532 22433332 59999999999999999999998 77898888776
Q ss_pred chhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCc
Q 002623 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGR 786 (899)
Q Consensus 718 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~ 786 (899)
+.. .++|..... ...++..++...++||||||+|.+. ..++..+.+++..-.-.+
T Consensus 215 l~~-----k~~ge~~~~-----lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~---- 280 (398)
T PTZ00454 215 FVQ-----KYLGEGPRM-----VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD---- 280 (398)
T ss_pred HHH-----HhcchhHHH-----HHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC----
Confidence 532 233332211 1244556666778999999999763 234444444443210000
Q ss_pred eeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHh--ccceEEecCCCCHHHHHHHHHHH
Q 002623 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 787 ~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~--R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
...+++||+|||. ...++|++++ |||..|.|++|+.++...|++..
T Consensus 281 --~~~~v~VI~aTN~------------------------------~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 281 --QTTNVKVIMATNR------------------------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred --CCCCEEEEEecCC------------------------------chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHH
Confidence 1236889999998 6778888884 99999999999999999999988
Q ss_pred HHHHHh-------hcccCCCccCHHHHHHhhcccc
Q 002623 865 VSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 892 (899)
Q Consensus 865 l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 892 (899)
+.++.. .+.....++++..|..+|..+.
T Consensus 329 ~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 329 TSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAG 363 (398)
T ss_pred HhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 886543 2222346788888888888653
No 144
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=6.4e-16 Score=178.65 Aligned_cols=171 Identities=19% Similarity=0.290 Sum_probs=117.4
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ceE-Eeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~~ 722 (899)
+++|+||+.+++.|.+.+...+. ++ .+||+||+|||||++|+.|++.++.... ++- .-+|..+....
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL----~H----AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRL----HH----AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCC----Ce----EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC
Confidence 56799999999999988763221 11 3799999999999999999999953211 110 01122221110
Q ss_pred hhhhhcCC-CCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 723 AVSRLIGA-PPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 723 ~~~~l~g~-~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
...++-- .....|.++.+.+.+.+. ...+.|+||||+|.|+...+|.||+.||+ ...+++||+
T Consensus 87 -h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP~~v~FIL 154 (830)
T PRK07003 87 -FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPPHVKFIL 154 (830)
T ss_pred -CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cCCCeEEEE
Confidence 0001100 011122222233333332 23578999999999999999999999997 345789999
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+||. ...+.+.+++|| ..+.|.+++.+++.+++...+.+.+
T Consensus 155 aTtd------------------------------~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 155 ATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred EECC------------------------------hhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC
Confidence 9987 567889999999 9999999999999999888877643
No 145
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.4e-16 Score=179.43 Aligned_cols=189 Identities=25% Similarity=0.373 Sum_probs=149.8
Q ss_pred hccceeccchHHHHHHHHHHHH-------HcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRS-------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~-------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
.+++|.|.+++++.|.+.+.-. +.|-..|+ .+||+||||||||.||+++|... +.||+.++.++|.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk----GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFv 381 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK----GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFV 381 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC----ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHH
Confidence 3688999999999999988533 34544444 39999999999999999999998 8999999999996
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC---------------hHHHHHHHHhhcCCeeecCC
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH---------------SDVFNVFLQILDDGRVTDSQ 784 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~---------------~~~~~~Ll~~le~g~~~~~~ 784 (899)
+. +.|. |..-.+.++...+.+.++|+|+||||... ...+|+||.-||. ..+
T Consensus 382 E~-----~~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg-f~~--- 447 (774)
T KOG0731|consen 382 EM-----FVGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG-FET--- 447 (774)
T ss_pred HH-----hccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC-CcC---
Confidence 54 2222 22223567888888888999999999754 2367888888874 211
Q ss_pred CceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHH
Q 002623 785 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVR 862 (899)
Q Consensus 785 g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~ 862 (899)
..+++|+++||. .+.++++|+ +|||.+|.+..++.....+|++
T Consensus 448 -----~~~vi~~a~tnr------------------------------~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 448 -----SKGVIVLAATNR------------------------------PDILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred -----CCcEEEEeccCC------------------------------ccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence 146999999999 677888888 8999999999999999999999
Q ss_pred HHHHHHHhh--------cccCCCccCHHHHHHhhccc
Q 002623 863 LQVSFSKVS--------WIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 863 ~~l~~~~~~--------~~~~~~~~~~~~l~~~~~~~ 891 (899)
.++...... +..-..+|+.+.|+.+|..+
T Consensus 493 ~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 493 VHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEA 529 (774)
T ss_pred HHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHH
Confidence 999877654 44556789999999988754
No 146
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.66 E-value=3e-15 Score=168.93 Aligned_cols=205 Identities=22% Similarity=0.268 Sum_probs=162.3
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHhhcCCCcc--ccCC--------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQ--ALMN-------- 311 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~-~~LL~Gp~G~GKT~la~~la~~l~~~~~p~--~l~~-------- 311 (899)
..|..+|||..|++++||+..++.+...+...+.. ..||.||-|||||++|+.+|+.+.+.+.+. .+..
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 45778999999999999999999999988766554 459999999999999999999998754221 1111
Q ss_pred ----CeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-
Q 002623 312 ----RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG- 383 (899)
Q Consensus 312 ----~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~- 383 (899)
..++++|..+ .. ..+.++.+.+.+.. .+..-|++|||+|+|. ..+.|.|+..|+..
T Consensus 84 ~g~~~DviEiDaAS------n~--gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP 147 (515)
T COG2812 84 EGSLIDVIEIDAAS------NT--GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPP 147 (515)
T ss_pred cCCcccchhhhhhh------cc--ChHHHHHHHHHhccCCccccceEEEEecHHhhh--------HHHHHHHhcccccCc
Confidence 2222222211 11 22346666666653 2346699999999998 78899999999876
Q ss_pred -CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 384 -ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 384 -~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
+|.+|.|||... .+++.+++||+.+.|...+.+++...|..++.+ .++.++++++..+++.+++-
T Consensus 148 ~hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~----E~I~~e~~aL~~ia~~a~Gs----- 213 (515)
T COG2812 148 SHVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK----EGINIEEDALSLIARAAEGS----- 213 (515)
T ss_pred cCeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHcCCC-----
Confidence 899999999987 899999999999999999999999988888887 89999999999999999763
Q ss_pred ChhhHHHHHHHHHHhh
Q 002623 463 LPDKAIDLVDEAAAKL 478 (899)
Q Consensus 463 ~p~~a~~lld~a~~~~ 478 (899)
..++..++|.+.+..
T Consensus 214 -~RDalslLDq~i~~~ 228 (515)
T COG2812 214 -LRDALSLLDQAIAFG 228 (515)
T ss_pred -hhhHHHHHHHHHHcc
Confidence 336889999998764
No 147
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=8.4e-16 Score=178.41 Aligned_cols=184 Identities=18% Similarity=0.269 Sum_probs=141.9
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcC----CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRR----TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~----~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
..|.++|+|.++++++|++..++.+...+... ..+++||+||||||||++|+++|+.+ +.+++.+|
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ieln 71 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELN 71 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEc
Confidence 36899999999999999999888887766432 26789999999999999999999998 88899998
Q ss_pred cccccccccccchHHHHHHHHHHHHHhh-----CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecCh
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTES-----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 393 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~-----~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~ 393 (899)
.++.... ..+..++..+... ..+.||+|||+|.+.+..+ ....+.|..+++.....+|++||.
T Consensus 72 asd~r~~--------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~~~aL~~~l~~~~~~iIli~n~ 139 (482)
T PRK04195 72 ASDQRTA--------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGGARAILELIKKAKQPIILTAND 139 (482)
T ss_pred ccccccH--------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhHHHHHHHHHHcCCCCEEEeccC
Confidence 7654311 1233333333321 1467999999999975322 233455666777777777888876
Q ss_pred hHHHhhhccCH-HHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 394 DEYRKYIEKDP-ALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 394 ~~~~~~~~~d~-al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
.. .+.+ .+++||..|.|++|+.+++..+++.++.. .++.++++++..+++.+.+.
T Consensus 140 ~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 140 PY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGD 195 (482)
T ss_pred cc-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 53 4555 78899999999999999999999988876 78999999999999988653
No 148
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3e-16 Score=179.33 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=119.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC---Cc-eEEeccccc---hh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE---EA-LVRIDMSEY---ME 720 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~---~~-~~~i~~~~~---~~ 720 (899)
+++|+||+.+++.|.+++...+... .+||+||+|||||++|+.|++.++..+ .. ...-.|... ..
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpH--------A~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~ 86 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHH--------AYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTE 86 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCce--------EEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHH
Confidence 5679999999999999987543211 379999999999999999999996421 00 000012111 10
Q ss_pred h--hhhhhhcCCC-CCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCE
Q 002623 721 K--HAVSRLIGAP-PGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (899)
Q Consensus 721 ~--~~~~~l~g~~-~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 793 (899)
. .....++.-. ....|.++.+.+.+.+. ...+.|+||||+|.|+...+|.||+.||+ ...++
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-----------PP~~v 155 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPEHV 155 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-----------CCCCc
Confidence 0 0000111100 11233333344444443 23468999999999999999999999997 34578
Q ss_pred EEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 794 iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+||++||. ...+.+.+++|| ..+.|.+++.+++.+.+.+.+.+.+
T Consensus 156 ~FILaTte------------------------------p~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 156 KFILATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred eEEEEeCC------------------------------hHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC
Confidence 89999887 677889999999 9999999999999998888876543
No 149
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.9e-16 Score=183.86 Aligned_cols=181 Identities=19% Similarity=0.309 Sum_probs=121.8
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcce-eEEeccCCCcHHHHHHHHHHHhcCCCC----ceE-Eeccccchhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIAS-FMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~-lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~ 721 (899)
+++|+||+.+++.|.+++...+. .| +||+||||||||++|+++|+.++.... ++. .-.|..+...
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl---------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g 85 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL---------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQG 85 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC---------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcC
Confidence 56799999999999988864321 13 699999999999999999999954311 110 0011111110
Q ss_pred hh--hhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 HA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 ~~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
.. +..+-+ ....+....+.+.+.+. ...+.|+||||+|+|+.+.+|.||+.||+ ...+++|
T Consensus 86 ~~~DviEidA--as~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~~vrF 152 (944)
T PRK14949 86 RFVDLIEVDA--ASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPEHVKF 152 (944)
T ss_pred CCceEEEecc--ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCCCeEE
Confidence 00 000101 11123233334444443 24568999999999999999999999997 3356888
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccC
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS 875 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~ 875 (899)
|++|+. ...+.+.+++|| .++.|.+++.+++...+.+.+...+
T Consensus 153 ILaTTe------------------------------~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~Eg------ 195 (944)
T PRK14949 153 LLATTD------------------------------PQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQ------ 195 (944)
T ss_pred EEECCC------------------------------chhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcC------
Confidence 888776 456778999999 9999999999999999888877632
Q ss_pred CCccCHHHHHHhh
Q 002623 876 PWHFNYEMLVKFC 888 (899)
Q Consensus 876 ~~~~~~~~l~~~~ 888 (899)
..++++++..+.
T Consensus 196 -I~~edeAL~lIA 207 (944)
T PRK14949 196 -LPFEAEALTLLA 207 (944)
T ss_pred -CCCCHHHHHHHH
Confidence 345555544433
No 150
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=156.47 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=155.5
Q ss_pred HHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc
Q 002623 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (899)
Q Consensus 639 ~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (899)
++..|+..+...++||.-+++.|..+++....... |++|+ .+-|+|+|||||..+++.||+.++..+..- .+
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S------~~ 143 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-PRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLRS------PF 143 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-CCCCe-EEEecCCCCCchhHHHHHHHHHHHhccccc------hh
Confidence 35667888889999999999999999987666444 89998 688999999999999999999997654321 11
Q ss_pred hhhhhhhhhcCCCCCCcc-ccc--ccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 719 MEKHAVSRLIGAPPGYVG-YEE--GGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 719 ~~~~~~~~l~g~~~~~~g-~~~--~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
... -+...--+.+.++. |.+ ...+.+.+..++.++++|||+|+|++..++.|-..+|-....+ -+++.++||
T Consensus 144 V~~-fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~----gv~frkaIF 218 (344)
T KOG2170|consen 144 VHH-FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVS----GVDFRKAIF 218 (344)
T ss_pred HHH-hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccc----cccccceEE
Confidence 100 00100011111211 111 1345666778899999999999999999999999998532222 257889999
Q ss_pred EEecCCChhhhhccC-----CCCCCCcchHHHHHHHHHHHHHhcC-----ChHHH--hccceEEecCCCCHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMD-----DETFPKETAYETIKQRVMDAARSIF-----RPEFM--NRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 796 I~ttN~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~ll--~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
|+-||.|++.+.... .|..........++..++....+.- ...+. +++|.+|+|.|++..++..+++.
T Consensus 219 IfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~ 298 (344)
T KOG2170|consen 219 IFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRA 298 (344)
T ss_pred EEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHH
Confidence 999999998887542 3555555556666666654443221 11122 78899999999999999999999
Q ss_pred HHHHHH
Q 002623 864 QVSFSK 869 (899)
Q Consensus 864 ~l~~~~ 869 (899)
.+.+-+
T Consensus 299 el~~rg 304 (344)
T KOG2170|consen 299 ELRKRG 304 (344)
T ss_pred HHHhcc
Confidence 998766
No 151
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=4.7e-15 Score=165.42 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=146.3
Q ss_pred cHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccc
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI 323 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~ 323 (899)
.|.++|+|.+|++++|++..++.+.+.+......+++|+||||||||++|+++++.+.+.. .+.+++.++++.+.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhh
Confidence 5899999999999999999999988888776666899999999999999999999985422 13456777776543
Q ss_pred cccc-----------ccch-------HHHHHHHHHHHHHhh----CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc
Q 002623 324 AGAK-----------YRGE-------FEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG 381 (899)
Q Consensus 324 ~~~~-----------~~g~-------~~~~l~~l~~~~~~~----~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~ 381 (899)
.... +.+. ....++.++...... ..+.+|+|||+|.+. .+.++.|..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~--------~~~~~~L~~~le 150 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR--------EDAQQALRRIME 150 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC--------HHHHHHHHHHHH
Confidence 1110 0000 112233333333221 234599999999886 345666777776
Q ss_pred C--CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccC
Q 002623 382 R--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (899)
Q Consensus 382 ~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~ 459 (899)
. ...++|.+++... .+.+.+++|+..+.+.+|+.+++..+++..+.+ .++.++++++..++..+.+.
T Consensus 151 ~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gd-- 219 (337)
T PRK12402 151 QYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGD-- 219 (337)
T ss_pred hccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC--
Confidence 3 3466777766543 456889999999999999999999999888776 78889999999999988542
Q ss_pred CCCChhhHHHHHHHHH
Q 002623 460 GRFLPDKAIDLVDEAA 475 (899)
Q Consensus 460 ~~~~p~~a~~lld~a~ 475 (899)
...++..++.++
T Consensus 220 ----lr~l~~~l~~~~ 231 (337)
T PRK12402 220 ----LRKAILTLQTAA 231 (337)
T ss_pred ----HHHHHHHHHHHH
Confidence 334555555433
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.3e-15 Score=171.63 Aligned_cols=204 Identities=19% Similarity=0.188 Sum_probs=153.6
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
.-|..++||..|+++|||+..++.+...+......| +||+||+|+|||++|+.+|+.+.+...+..
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 347789999999999999999999998887766555 789999999999999999999976422110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++.++... ..+ .+.++.+.+.+.. .++.-|++|||+|.+. ..++|.|+..+++
T Consensus 84 ~~~~~dv~~idgas------~~~--vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp 147 (563)
T PRK06647 84 NDNSLDVIEIDGAS------NTS--VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPP 147 (563)
T ss_pred cCCCCCeEEecCcc------cCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCC
Confidence 0122344443211 111 1234444444332 2356699999999997 5678889999986
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
..+.+|++|+... .+.+++++||+.+.|..++.+++.+.++..+.. .++.++++++..++..+.+
T Consensus 148 ~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~G------ 212 (563)
T PRK06647 148 PYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTG------ 212 (563)
T ss_pred CCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 5788888887653 567899999999999999999999888887776 7889999999999998864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..+..+++.++..
T Consensus 213 dlR~alslLdklis~ 227 (563)
T PRK06647 213 SVRDAYTLFDQVVSF 227 (563)
T ss_pred CHHHHHHHHHHHHhh
Confidence 355788888877654
No 153
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.64 E-value=4e-15 Score=172.36 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=165.8
Q ss_pred eeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCC
Q 002623 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGA 730 (899)
Q Consensus 651 i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~ 730 (899)
++|.+..+..+...+...... . .+++++|++||||+.+|++++....+.+.+|+.+||+.+......+.+||.
T Consensus 141 lig~s~~~~~~~~~i~~~~~~----~---~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAPS----E---ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhccCC----C---CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 567777776666655433211 1 148999999999999999999998777899999999998766556778887
Q ss_pred CCCCc-ccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhcc
Q 002623 731 PPGYV-GYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNM 809 (899)
Q Consensus 731 ~~~~~-g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~ 809 (899)
..+.. |.. ....+.+..+.+|+||||||+.+++..|..|+++++++.+....+......++++|+||+........
T Consensus 214 ~~~~~~~~~--~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~- 290 (441)
T PRK10365 214 EKGAFTGAD--KRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVN- 290 (441)
T ss_pred CCCCcCCCC--cCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHH-
Confidence 65532 211 11234556778899999999999999999999999999876544433344588999999885543322
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHH
Q 002623 810 DDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVK 886 (899)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~ 886 (899)
.+.|++.|+.|+.. .|.+|||. .+|+..+++.++.++..+++.....++++++..
T Consensus 291 ----------------------~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (441)
T PRK10365 291 ----------------------AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDL 348 (441)
T ss_pred ----------------------cCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 67899999999965 78899998 579999999999999988888778899999999
Q ss_pred hhcccccc
Q 002623 887 FCYLAFTI 894 (899)
Q Consensus 887 ~~~~~~~~ 894 (899)
++.++|+.
T Consensus 349 L~~~~wpg 356 (441)
T PRK10365 349 LIHYDWPG 356 (441)
T ss_pred HHhCCCCC
Confidence 99999964
No 154
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.4e-16 Score=168.36 Aligned_cols=222 Identities=19% Similarity=0.271 Sum_probs=148.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC-CceE------Eec------
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE-EALV------RID------ 714 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~-~~~~------~i~------ 714 (899)
+.+|+||+.+++.+..+ .+|.+ ++||+||||||||++|+.+...+..-. ..++ .++
T Consensus 178 ~~DV~GQ~~AKrAleiA----AAGgH-------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~ 246 (490)
T COG0606 178 FKDVKGQEQAKRALEIA----AAGGH-------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEG 246 (490)
T ss_pred hhhhcCcHHHHHHHHHH----HhcCC-------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccccc
Confidence 57899999998887655 45666 699999999999999999998872200 0000 000
Q ss_pred -----cccchhhh---hhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-C
Q 002623 715 -----MSEYMEKH---AVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-G 785 (899)
Q Consensus 715 -----~~~~~~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g 785 (899)
..-|...| +...++|.- +....+.+..+++|||||||+-.+...+++.|.+.||+|+++.+. +
T Consensus 247 ~~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~ 318 (490)
T COG0606 247 CPLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAG 318 (490)
T ss_pred CccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcC
Confidence 01111111 111222210 123345667788999999999999999999999999999887766 4
Q ss_pred ceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHH-------
Q 002623 786 RTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI------- 857 (899)
Q Consensus 786 ~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i------- 857 (899)
..+.+ .++++|+++|++++...+ .....|.|.......+ .++++-.|++|||..+..+.++..+.
T Consensus 319 ~~v~ypa~Fqlv~AmNpcpcG~~~---~~~~~C~c~~~~~~~Y----~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ 391 (490)
T COG0606 319 SKVTYPARFQLVAAMNPCPCGNLG---APLRRCPCSPRQIKRY----LNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTG 391 (490)
T ss_pred CeeEEeeeeEEhhhcCCCCccCCC---CCCCCcCCCHHHHHHH----HHHhhHHHHhhhhheecccCCCHHHhhcCCCCC
Confidence 45555 599999999999887644 3334555666666666 46778899999999999998873333
Q ss_pred ------HHHHHHHHHHHHhhccc--CCCccCHHHHHHhhccccccc
Q 002623 858 ------SSIVRLQVSFSKVSWIY--SPWHFNYEMLVKFCYLAFTIR 895 (899)
Q Consensus 858 ------~~I~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 895 (899)
++-+.+.-.....++.+ .+..++.++|.++|.+.-.-.
T Consensus 392 ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~ 437 (490)
T COG0606 392 ESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDA 437 (490)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHH
Confidence 22222222222233333 367788899999998765433
No 155
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.64 E-value=3.4e-14 Score=168.17 Aligned_cols=206 Identities=22% Similarity=0.296 Sum_probs=139.7
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC-------CCCceEEeccccch
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEYM 719 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~~~i~~~~~~ 719 (899)
-+.+++||+.+++.+...+. . ..+ .+++|+||||||||++|+++++.... .+.+|+.++|..+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia---~--~~~----~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVA---S--PFP----QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred cHHhceeCcHHHHHHHHHHh---c--CCC----CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence 35679999999998766542 1 111 15999999999999999999987621 35689999998763
Q ss_pred hh-hh-hhhhcCCCCC--Ccccc-------cccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCC---
Q 002623 720 EK-HA-VSRLIGAPPG--YVGYE-------EGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG--- 785 (899)
Q Consensus 720 ~~-~~-~~~l~g~~~~--~~g~~-------~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g--- 785 (899)
.. .. ...++|.... +.+.. ......+.+....+++|||||++.+++..|+.|+.+|+++.+.-..+
T Consensus 223 ~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~ 302 (615)
T TIGR02903 223 WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYD 302 (615)
T ss_pred CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceec
Confidence 11 11 1233443210 00000 00112234456678899999999999999999999999886432111
Q ss_pred ---ce-----------eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCC
Q 002623 786 ---RT-----------VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 851 (899)
Q Consensus 786 ---~~-----------~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~ 851 (899)
.. ....++++|++|+.. ...++++|++|| ..+.|+|
T Consensus 303 ~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~-----------------------------~~~l~~aLrSR~-~~i~~~p 352 (615)
T TIGR02903 303 PDDPNVPKYIKKLFEEGAPADFVLIGATTRD-----------------------------PEEINPALRSRC-AEVFFEP 352 (615)
T ss_pred cCCcccchhhhhhcccCccceEEEEEecccc-----------------------------ccccCHHHHhce-eEEEeCC
Confidence 00 012346666665541 345678899999 5779999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhcccccccccc
Q 002623 852 LDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFTIRSIV 898 (899)
Q Consensus 852 l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 898 (899)
++.+++..|++..+.+.. ..++++++..+..++|..|..+
T Consensus 353 ls~edi~~Il~~~a~~~~-------v~ls~eal~~L~~ys~~gRral 392 (615)
T TIGR02903 353 LTPEDIALIVLNAAEKIN-------VHLAAGVEELIARYTIEGRKAV 392 (615)
T ss_pred CCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHCCCcHHHHH
Confidence 999999999999887542 3578899999999999887653
No 156
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.5e-16 Score=164.42 Aligned_cols=196 Identities=20% Similarity=0.228 Sum_probs=145.1
Q ss_pred hccceeccchHHHHHHHHHHHHHc---CCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~---~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (899)
-|++|.|.+++++-|.++|..--. -...-++|-..+|++||||||||+||+++|..+ +..|+.|..+.+.
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstlt---- 282 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLT---- 282 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhh----
Confidence 368899999999999999853110 011124555569999999999999999999999 7889888888763
Q ss_pred hhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC------------hHHHHHHHHhhcCCeeecCCCceeee-
Q 002623 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSF- 790 (899)
Q Consensus 724 ~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~------------~~~~~~Ll~~le~g~~~~~~g~~~~~- 790 (899)
+++-|..... .+.|++..+...+++|||||||.+- ..+-+.||..||.- +.+...
T Consensus 283 -SKwRGeSEKl-----vRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~------~~t~e~~ 350 (491)
T KOG0738|consen 283 -SKWRGESEKL-----VRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGV------QGTLENS 350 (491)
T ss_pred -hhhccchHHH-----HHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcc------ccccccc
Confidence 4444443322 2678999998888999999999753 45788899998741 111122
Q ss_pred CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHh
Q 002623 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV 870 (899)
Q Consensus 791 ~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~ 870 (899)
+-+.|+++||. .=.++.+|++||...|.+|-++.+....+++..|.....
T Consensus 351 k~VmVLAATN~------------------------------PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~ 400 (491)
T KOG0738|consen 351 KVVMVLAATNF------------------------------PWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL 400 (491)
T ss_pred eeEEEEeccCC------------------------------CcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC
Confidence 23677888898 445678999999888999999999999999998876543
Q ss_pred -------hcccCCCccCHHHHHHhhccc
Q 002623 871 -------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 871 -------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
.+....-+++.+.|...|..+
T Consensus 401 ~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 401 DDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred CCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 222234678888888888754
No 157
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.2e-14 Score=165.96 Aligned_cols=204 Identities=19% Similarity=0.184 Sum_probs=150.3
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
..|++++||.+|+++||++..++.+...+......+ +||+||+|+|||++|+.+|+.+.+......
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 468899999999999999999998888887665544 789999999999999999999976321100
Q ss_pred --cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-
Q 002623 309 --LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (899)
Q Consensus 309 --l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (899)
.....++.++.. ...| .+.++.+...+.. .+...|++|||+|.+. ...++.|..++++
T Consensus 85 ~~~~~~d~~~i~g~------~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------~~~~n~LLk~lEep 148 (451)
T PRK06305 85 SSGTSLDVLEIDGA------SHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------KEAFNSLLKTLEEP 148 (451)
T ss_pred hcCCCCceEEeecc------ccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------HHHHHHHHHHhhcC
Confidence 011234444321 1222 1123333333321 2456799999999997 5567888999986
Q ss_pred -CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCC
Q 002623 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (899)
Q Consensus 383 -~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~ 461 (899)
+.+.+|++|+... .+.+++++||..+.|..++.+++...+...+++ .++.++++++..++..+.+
T Consensus 149 ~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~g----- 214 (451)
T PRK06305 149 PQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQG----- 214 (451)
T ss_pred CCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC-----
Confidence 4778888886653 577999999999999999999999888887776 7889999999999999864
Q ss_pred CChhhHHHHHHHHHHh
Q 002623 462 FLPDKAIDLVDEAAAK 477 (899)
Q Consensus 462 ~~p~~a~~lld~a~~~ 477 (899)
-...+..+++..+..
T Consensus 215 -dlr~a~~~Lekl~~~ 229 (451)
T PRK06305 215 -SLRDAESLYDYVVGL 229 (451)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 234677777765543
No 158
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=1.7e-14 Score=162.22 Aligned_cols=204 Identities=22% Similarity=0.264 Sum_probs=151.1
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA------------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~------------- 308 (899)
.+|.++++|..+++++|++..++.+...+......| +||+||||+|||++|+.+++.+.+...+..
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 478999999999999999999999998887665544 689999999999999999999875432110
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-- 382 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-- 382 (899)
.....++.++.... ...+.++.+++.+... +++.|++|||+|.+. ....+.|...+++
T Consensus 82 ~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 82 SGSSLDVIEIDAASN--------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------KSAFNALLKTLEEPP 145 (355)
T ss_pred cCCCCCEEEeecccc--------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------HHHHHHHHHHHhCCc
Confidence 01233555543211 1122355666655432 345699999999886 4566777778875
Q ss_pred CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 383 GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 383 ~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
..+.+|.+|+... .+.+++++||..+.|++|+.+++..+++..+++ .++.++++++..++..+.+
T Consensus 146 ~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g------ 210 (355)
T TIGR02397 146 EHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADG------ 210 (355)
T ss_pred cceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 4677777776654 456899999999999999999999999888876 6888999999999988854
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-+..+...++.+...
T Consensus 211 ~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 211 SLRDALSLLDQLISF 225 (355)
T ss_pred ChHHHHHHHHHHHhh
Confidence 355777777766653
No 159
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.5e-14 Score=166.04 Aligned_cols=204 Identities=22% Similarity=0.228 Sum_probs=151.3
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCcc----c---------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQ----A--------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~----~--------- 308 (899)
.+|..++||..|++++|++..++.+...+......|. ||+||+|+|||++|+.+|+.+.+..... .
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 4789999999999999999999999998877666664 7899999999999999999986521111 0
Q ss_pred -cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-
Q 002623 309 -LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG- 383 (899)
Q Consensus 309 -l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~- 383 (899)
.....++.+|.++ ..| .+.++.+.+.+.. .+...|++|||+|.+. ..+++.|...++..
T Consensus 84 ~g~~~d~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------~~a~naLLk~LEepp 147 (486)
T PRK14953 84 KGSFPDLIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------KEAFNALLKTLEEPP 147 (486)
T ss_pred cCCCCcEEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 0112345554321 122 1223444444432 2345799999999987 56778888888864
Q ss_pred -CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCC
Q 002623 384 -ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRF 462 (899)
Q Consensus 384 -~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~ 462 (899)
.+.+|.+|+... .+.+++++||+.+.|.+|+.+++...++.+++. .++.++++++..++..+.+
T Consensus 148 ~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G------ 212 (486)
T PRK14953 148 PRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEG------ 212 (486)
T ss_pred CCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------
Confidence 567777666543 467899999999999999999999999888876 6889999999999998864
Q ss_pred ChhhHHHHHHHHHHh
Q 002623 463 LPDKAIDLVDEAAAK 477 (899)
Q Consensus 463 ~p~~a~~lld~a~~~ 477 (899)
-...+..+++.++..
T Consensus 213 ~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 213 GMRDAASLLDQASTY 227 (486)
T ss_pred CHHHHHHHHHHHHHh
Confidence 345788888877643
No 160
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.9e-15 Score=166.39 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=150.1
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCcc----------cc--
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ----------AL-- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~----------~l-- 309 (899)
.-|++++||.+|++++|++..++.+...+......| +||+||||||||++|+.+|+.+.+...+. ..
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 357899999999999999998888888777666655 88999999999999999999997632110 00
Q ss_pred ----------CCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHH
Q 002623 310 ----------MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLL 376 (899)
Q Consensus 310 ----------~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L 376 (899)
....++.++... .. ..+.++.+...+.. .+...|+||||+|.+. ...++.|
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~------~~--~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~~~~~~L 147 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAAS------NN--SVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------IAAFNAF 147 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccc------cC--CHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------HHHHHHH
Confidence 011233333211 11 12345555555532 2345699999999997 4567778
Q ss_pred hhhhcCC--CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhc
Q 002623 377 KPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (899)
Q Consensus 377 ~~~l~~~--~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls 454 (899)
...+++. ...+|.+|+... .+.+.+++|+..+.|.+++.++....++..++. .++.++++++..++..+
T Consensus 148 Lk~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 148 LKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Confidence 8888864 667777776542 566899999999999999999988888877776 68899999999999999
Q ss_pred ccccCCCCChhhHHHHHHHHHHhh
Q 002623 455 DRYISGRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 455 ~~~i~~~~~p~~a~~lld~a~~~~ 478 (899)
.+ -+..+...++.++..+
T Consensus 219 ~g------~lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 219 QG------SMRDAQSILDQVIAFS 236 (397)
T ss_pred CC------CHHHHHHHHHHHHHhc
Confidence 75 3456777777766553
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.62 E-value=1.9e-14 Score=170.33 Aligned_cols=212 Identities=22% Similarity=0.268 Sum_probs=148.6
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 322 (899)
.++.+.+||.+|++++|++..++.++..+......+++|+||||||||++|+.+++........+...+.+++.+++..+
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 56788889999999999999999998888767777899999999999999999998764322111112568899987665
Q ss_pred cccc-----cccchHH----HHHHHHHHH---------HHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-
Q 002623 323 IAGA-----KYRGEFE----DRLKAVLKE---------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG- 383 (899)
Q Consensus 323 ~~~~-----~~~g~~~----~~l~~l~~~---------~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~- 383 (899)
.... ...|... ...+..+.. ......+++|||||++.|. ...++.|..+++++
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld--------~~~Q~~Ll~~Le~~~ 293 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD--------PLLQNKLLKVLEDKR 293 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC--------HHHHHHHHHHHhhCe
Confidence 2100 0011110 001111110 0001235699999999887 55666677776543
Q ss_pred -----------------------------CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHH
Q 002623 384 -----------------------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERY 434 (899)
Q Consensus 384 -----------------------------~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~ 434 (899)
.+++|++|+.... .++++|++||..+.+++++.+++..|++..+.+
T Consensus 294 v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~- 368 (615)
T TIGR02903 294 VEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK- 368 (615)
T ss_pred EEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH-
Confidence 3677887777653 678999999999999999999999999988876
Q ss_pred hhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHh
Q 002623 435 ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 435 ~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~ 477 (899)
.++.++++++..+...+. .. .+++..+..++..
T Consensus 369 ---~~v~ls~eal~~L~~ys~---~g----Rraln~L~~~~~~ 401 (615)
T TIGR02903 369 ---INVHLAAGVEELIARYTI---EG----RKAVNILADVYGY 401 (615)
T ss_pred ---cCCCCCHHHHHHHHHCCC---cH----HHHHHHHHHHHHH
Confidence 467789999988877653 12 3677777666544
No 162
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.2e-16 Score=157.57 Aligned_cols=193 Identities=23% Similarity=0.377 Sum_probs=145.1
Q ss_pred hhccceeccchHHHHHHHHHHH--------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecccc
Q 002623 646 ELHKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (899)
Q Consensus 646 ~l~~~i~Gq~~~~~~l~~~l~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (899)
.-+.++-|.+..++.|.+++.. -..|+.+|. .++|||+||||||.||+++|+.. ...|+++-.++
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK----GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGse 254 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK----GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSE 254 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC----eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHH
Confidence 3457899999999999999842 234555444 49999999999999999999877 67788888887
Q ss_pred chhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCc
Q 002623 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGR 786 (899)
Q Consensus 718 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~ 786 (899)
+ +.++.|.-|..+ ++++.....+.++|+||||||... .++|..+|.+|..-.-.|+
T Consensus 255 L-----iQkylGdGpklv-----RqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--- 321 (440)
T KOG0726|consen 255 L-----IQKYLGDGPKLV-----RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--- 321 (440)
T ss_pred H-----HHHHhccchHHH-----HHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc---
Confidence 7 444556544333 567777788888999999999764 4588888888764222232
Q ss_pred eeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHH
Q 002623 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 787 ~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
..++.+|++||. -..++|+|+ +|||..|.|+.++.....+|+...
T Consensus 322 ---rgDvKvimATnr------------------------------ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 322 ---RGDVKVIMATNR------------------------------IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred ---cCCeEEEEeccc------------------------------ccccCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 247899999998 677888888 899999999999998888888776
Q ss_pred HHHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 865 VSFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 865 l~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
-.++.. ++......++...+...|..+
T Consensus 369 Ts~Mtl~~dVnle~li~~kddlSGAdIkAictEa 402 (440)
T KOG0726|consen 369 TSRMTLAEDVNLEELIMTKDDLSGADIKAICTEA 402 (440)
T ss_pred ecccchhccccHHHHhhcccccccccHHHHHHHH
Confidence 555432 233344567778888888754
No 163
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.62 E-value=7.7e-15 Score=156.67 Aligned_cols=169 Identities=25% Similarity=0.298 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCC
Q 002623 655 DPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY 734 (899)
Q Consensus 655 ~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~ 734 (899)
...++.+.+.+..+..... ++||+||||||||++|+++|+.+ +.+++.++|..... .+.++|...++
T Consensus 4 t~~~~~l~~~~l~~l~~g~-------~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~~ 70 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGY-------PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAGY 70 (262)
T ss_pred CHHHHHHHHHHHHHHhcCC-------eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhccc
Confidence 3445555555544332211 49999999999999999999987 78999999987432 23444443221
Q ss_pred ccc--------------------ccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCC----cee-e
Q 002623 735 VGY--------------------EEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG----RTV-S 789 (899)
Q Consensus 735 ~g~--------------------~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g----~~~-~ 789 (899)
... ...+.+..+++ .+++|+||||+++++++++.|+.+|+++.++.+.+ ..+ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~ 148 (262)
T TIGR02640 71 TRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDV 148 (262)
T ss_pred chhhHHHHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEec
Confidence 100 01234444443 34699999999999999999999999998776542 222 3
Q ss_pred eCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHH
Q 002623 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 790 ~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
.+++++|+|+|+..... ...++++|++|| ..+.++.++.++..+|+...
T Consensus 149 ~~~frvIaTsN~~~~~g-------------------------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 149 HPEFRVIFTSNPVEYAG-------------------------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred CCCCEEEEeeCCccccc-------------------------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 36899999999842110 234578999999 78889999988888888764
No 164
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.8e-15 Score=174.94 Aligned_cols=168 Identities=21% Similarity=0.341 Sum_probs=116.8
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc------hhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------MEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~~ 721 (899)
+++|+||+.+++.|...+...+. + + .+||+||+|||||++|+.+|+.++.... .....|... ...
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl--~--h----AyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~~~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRL--H--H----AYLFSGTRGVGKTTIARLLAKGLNCETG-ITATPCGECDNCREIEQG 85 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--C--e----EEEEECCCCCCHHHHHHHHHHhhhhccC-CCCCCCCCCHHHHHHHcC
Confidence 56799999999999988864321 1 1 2799999999999999999999954210 001112211 110
Q ss_pred h--hhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 H--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 ~--~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
. ++..+-+ ....+.++.+.+.+.+. ...+.|+||||+|+++...+|.||+.||+ ...+++|
T Consensus 86 ~~~D~ieida--as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~~v~F 152 (647)
T PRK07994 86 RFVDLIEIDA--ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKF 152 (647)
T ss_pred CCCCceeecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCCCeEE
Confidence 0 0000101 11223333344444433 23568999999999999999999999997 3457888
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
|++|+. ...+.+.+++|| ..+.|.+++.+++...+...+.+.
T Consensus 153 IL~Tt~------------------------------~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 153 LLATTD------------------------------PQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred EEecCC------------------------------ccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 888876 456788999999 999999999999999888887654
No 165
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.61 E-value=5.9e-15 Score=140.63 Aligned_cols=121 Identities=30% Similarity=0.463 Sum_probs=98.4
Q ss_pred cEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccch
Q 002623 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIH 358 (899)
Q Consensus 279 ~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~ 358 (899)
+||+||||||||++|+.+|+.+ +.+++.++++.+. ..+.++....+..++..+.....++||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 5899999999999999999998 8999999999988 347789999999999998765448999999999
Q ss_pred hhccCCCCC---chHHHHHHHhhhhcC-----CCeEEEEecChhHHHhhhccCHHHH-ccCc-eEEec
Q 002623 359 TVVGAGATN---GAMDAGNLLKPMLGR-----GELRCIGATTLDEYRKYIEKDPALE-RRFQ-QVYVD 416 (899)
Q Consensus 359 ~l~~~~~~~---~~~~~~~~L~~~l~~-----~~v~~I~at~~~~~~~~~~~d~al~-~Rf~-~i~~~ 416 (899)
.+.+..+.. ......+.|...+++ +++.+|++||..+ .+++++. +||+ .|.++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 999776222 233445555555542 4699999999965 7999999 9998 66765
No 166
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.61 E-value=7.2e-16 Score=173.03 Aligned_cols=194 Identities=23% Similarity=0.329 Sum_probs=130.8
Q ss_pred HhhccceeccchHHHHHHHHHHHHH--------cCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 002623 645 EELHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (899)
Q Consensus 645 ~~l~~~i~Gq~~~~~~l~~~l~~~~--------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (899)
...++++.|.+..++.+...+.... .|... |. .+||+||||||||++|+++++.+ +.+|+.+.++
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~---p~-gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~ 190 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEP---PK-GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGS 190 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCC---Cc-eEEEECCCCCCHHHHHHHHHHhC---CCCEEecchH
Confidence 3456789999999999999885321 12222 22 59999999999999999999998 6778888776
Q ss_pred cchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCC
Q 002623 717 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQG 785 (899)
Q Consensus 717 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g 785 (899)
++.. .++|..... ...++...+...++||||||+|.+. +.++..|.+++..-.-.+
T Consensus 191 ~l~~-----~~~g~~~~~-----i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--- 257 (364)
T TIGR01242 191 ELVR-----KYIGEGARL-----VREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD--- 257 (364)
T ss_pred HHHH-----HhhhHHHHH-----HHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC---
Confidence 6532 222221111 1234444555667899999999873 345556666553210000
Q ss_pred ceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHH
Q 002623 786 RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 786 ~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
...++.||+|||. ...++++++ +|||..|.|++|+.++..+|++.
T Consensus 258 ---~~~~v~vI~ttn~------------------------------~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 258 ---PRGNVKVIAATNR------------------------------PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred ---CCCCEEEEEecCC------------------------------hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHH
Confidence 1247899999998 456777777 59999999999999999999998
Q ss_pred HHHHHHhh-------cccCCCccCHHHHHHhhccc
Q 002623 864 QVSFSKVS-------WIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 864 ~l~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 891 (899)
++.+.... +.....+++...+..+|..+
T Consensus 305 ~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A 339 (364)
T TIGR01242 305 HTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEA 339 (364)
T ss_pred HHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 87654321 12223456666666666643
No 167
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.61 E-value=3.4e-15 Score=174.15 Aligned_cols=188 Identities=24% Similarity=0.340 Sum_probs=134.5
Q ss_pred ccceeccchHHHHHHHHHHHHHc-------CCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRA-------GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~-------~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (899)
+++|+|+++++..+...+...+. |... |. .+||+||||||||++|++||..+ +.+|+.++++++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~---~~-giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKI---PK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVE 126 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCC---CC-cEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHH
Confidence 46789999999888877653321 2222 22 59999999999999999999998 78999999887743
Q ss_pred hhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccCh--------------HHHHHHHHhhcCCeeecCCCc
Q 002623 721 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGR 786 (899)
Q Consensus 721 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~ 786 (899)
. +.|... .....++...+...++||||||||.+.+ .+++.|+..|+.- .
T Consensus 127 ~-----~~g~~~-----~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--~----- 189 (495)
T TIGR01241 127 M-----FVGVGA-----SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--G----- 189 (495)
T ss_pred H-----HhcccH-----HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--c-----
Confidence 2 222211 1113445555666779999999998642 3556677777531 1
Q ss_pred eeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHh--ccceEEecCCCCHHHHHHHHHHH
Q 002623 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 787 ~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~--R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
...+++||+|||. ...++|++++ |||..|.|++|+.++..+|++.+
T Consensus 190 --~~~~v~vI~aTn~------------------------------~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 190 --TNTGVIVIAATNR------------------------------PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred --CCCCeEEEEecCC------------------------------hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 1235899999998 6778888884 99999999999999999999998
Q ss_pred HHHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 865 VSFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 865 l~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
+..... .+.....+++...+..+|+.+
T Consensus 238 l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 238 AKNKKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 876432 222334567777777777643
No 168
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.7e-15 Score=155.48 Aligned_cols=197 Identities=22% Similarity=0.349 Sum_probs=132.5
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh-------hCCCe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-------RRPYA 753 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~ 753 (899)
++||.||+|+|||.||+.||+.+ +.||...||..+.. .||+|.+....+..++. ++..|
T Consensus 228 NvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 58999999999999999999999 89999999998843 46888666555555544 34568
Q ss_pred EEEEeCCCccC--------------hHHHHHHHHhhcCCeeecCC--------Cc--eeeeCCEEEEEecCCC-hhhhhc
Q 002623 754 VILFDEIEKAH--------------SDVFNVFLQILDDGRVTDSQ--------GR--TVSFTNTVIIMTSNVG-SQYILN 808 (899)
Q Consensus 754 vl~lDEid~l~--------------~~~~~~Ll~~le~g~~~~~~--------g~--~~~~~~~iiI~ttN~~-~~~~~~ 808 (899)
|+||||+|++. ..+|..||.++|.-.+..+. |. .+|..|+.||+..-.- .+.+..
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 99999999975 34999999999844333322 22 3566788888765432 222221
Q ss_pred c-------CCCCCCC------------cc----hHHHHHHHHH--HHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 809 M-------DDETFPK------------ET----AYETIKQRVM--DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 809 ~-------~~~~~~~------------~~----~~~~~~~~~~--~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
. +++..+. .. ....+.+.+. +-+.-.+-|+|.+||..+++|.+|+.+++..|+..
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 1 1111100 00 0111222221 12234578999999999999999999999988754
Q ss_pred ----HHHHHHhhcccC--CCccCHHHHHHhhccc
Q 002623 864 ----QVSFSKVSWIYS--PWHFNYEMLVKFCYLA 891 (899)
Q Consensus 864 ----~l~~~~~~~~~~--~~~~~~~~l~~~~~~~ 891 (899)
.+.++..-|... ..+|+++++....+.+
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~A 487 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLA 487 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHH
Confidence 444555544444 4689999988777653
No 169
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.3e-14 Score=167.76 Aligned_cols=204 Identities=18% Similarity=0.174 Sum_probs=150.8
Q ss_pred cHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCC---c-------c-----
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV---P-------Q----- 307 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~---p-------~----- 307 (899)
-+.+++||.+|+++|||+..++.+...+......| +||+||+|||||++|+.+|+.+.+... | .
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 46889999999999999999998888776655555 889999999999999999999976321 1 0
Q ss_pred -------ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHh
Q 002623 308 -------ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLK 377 (899)
Q Consensus 308 -------~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~ 377 (899)
......++.+|... ..| .+.++.+.+.+.. .+..-|++|||+|.+. ...++.|+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s------~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~a~naLL 148 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAAS------NNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TAAFNAFL 148 (620)
T ss_pred HHHHHHhccCCCCeEEecccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HHHHHHHH
Confidence 00112333343211 111 2345555555532 2345699999999997 56788899
Q ss_pred hhhcC--CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcc
Q 002623 378 PMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (899)
Q Consensus 378 ~~l~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~ 455 (899)
..|++ +..++|++|+... .+-+.+++|++.+.|.+++.+++...+..++.. .++.++++++..++.+++
T Consensus 149 K~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhC
Confidence 99987 4677777776542 567899999999999999999988888877776 788999999999999997
Q ss_pred cccCCCCChhhHHHHHHHHHHhh
Q 002623 456 RYISGRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 456 ~~i~~~~~p~~a~~lld~a~~~~ 478 (899)
+. ...+...++..+...
T Consensus 220 Gd------lr~al~eLeKL~~y~ 236 (620)
T PRK14954 220 GS------MRDAQSILDQVIAFS 236 (620)
T ss_pred CC------HHHHHHHHHHHHHhc
Confidence 53 346777777766554
No 170
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=4.5e-15 Score=171.32 Aligned_cols=169 Identities=19% Similarity=0.323 Sum_probs=117.1
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc------hhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------MEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~~ 721 (899)
+++|+||+.+++.|.+++...+. |+ .+||+||+|||||++|+.+|+.++.... .-.--|... ...
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l----~h----a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pCg~C~~C~~i~~g 85 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYL----HH----AYLFTGTRGVGKTTISRILAKCLNCEKG-VSANPCNDCENCREIDEG 85 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC----Ce----eEEEECCCCCCHHHHHHHHHHHhcCCCC-CCcccCCCCHHHHHHhcC
Confidence 56799999999999999865332 11 3899999999999999999999954211 000112111 110
Q ss_pred h--hhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 H--AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 ~--~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
. ++..+-+ .+..+.++.+.+.+.+. ...+.|+||||+|.++++.+|+|+..||+ ...+++|
T Consensus 86 ~~~d~~eida--as~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp~~~~f 152 (509)
T PRK14958 86 RFPDLFEVDA--ASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PPSHVKF 152 (509)
T ss_pred CCceEEEEcc--cccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cCCCeEE
Confidence 0 0001111 11233333333333333 23568999999999999999999999997 3457888
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
|++|+. ...+.+.+++|| .++.|.+++.+++...+...+.+.+
T Consensus 153 Ilattd------------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 153 ILATTD------------------------------HHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred EEEECC------------------------------hHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 888865 456677899999 9999999999999998888887654
No 171
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=1.2e-14 Score=160.74 Aligned_cols=166 Identities=17% Similarity=0.287 Sum_probs=121.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+++++||++.++.+...+...+.. ..|..+++|+||||||||++|+++|+.+ +..+..++.+.+...
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~------ 90 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKP------ 90 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccCh------
Confidence 567999999999998888655432 1233379999999999999999999998 555555444432111
Q ss_pred cCCCCCCcccccccchhHHHh-hCCCeEEEEeCCCccChHHHHHHHHhhcCCeee--cCCC---ce--eeeCCEEEEEec
Q 002623 728 IGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVT--DSQG---RT--VSFTNTVIIMTS 799 (899)
Q Consensus 728 ~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~--~~~g---~~--~~~~~~iiI~tt 799 (899)
+.+...+. ...++||||||||.+++..++.|+..|++..+. ...+ .. ...+.+.+|++|
T Consensus 91 -------------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at 157 (328)
T PRK00080 91 -------------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT 157 (328)
T ss_pred -------------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec
Confidence 11222222 234679999999999999999999999876432 1111 11 123567888888
Q ss_pred CCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 800 N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
|. ...++++|.+||+.++.|++++.+++.+|++..+...+
T Consensus 158 ~~------------------------------~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~ 197 (328)
T PRK00080 158 TR------------------------------AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG 197 (328)
T ss_pred CC------------------------------cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 87 45678899999988999999999999999998887654
No 172
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=2e-14 Score=159.05 Aligned_cols=202 Identities=20% Similarity=0.281 Sum_probs=145.9
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 322 (899)
..|.++++|..|++++|++..+..+...+......+++|+||||+|||++++.+++.+.... ....++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-----~~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-----WRENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-----cccceEEeccccc
Confidence 46899999999999999999999999888777667899999999999999999999985422 1234555554322
Q ss_pred cccccccchHHHHHHHHHHHHHhh-CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhHHHhh
Q 002623 323 IAGAKYRGEFEDRLKAVLKEVTES-EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKY 399 (899)
Q Consensus 323 ~~~~~~~g~~~~~l~~l~~~~~~~-~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~ 399 (899)
.. .......+.......... ..+.+++|||+|.+. .+.++.|..+++. ....+|.+++...
T Consensus 80 ~~----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~--------~~~~~~L~~~le~~~~~~~lIl~~~~~~---- 143 (319)
T PRK00440 80 RG----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT--------SDAQQALRRTMEMYSQNTRFILSCNYSS---- 143 (319)
T ss_pred cc----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC--------HHHHHHHHHHHhcCCCCCeEEEEeCCcc----
Confidence 10 011111222221111011 235699999999986 3455667777763 3566777776553
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHH
Q 002623 400 IEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (899)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~ 476 (899)
.+.+++.+|+..+.|++++.+++..+++..+.+ .++.++++++..++..+.+ -+..++..++.++.
T Consensus 144 -~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~g------d~r~~~~~l~~~~~ 209 (319)
T PRK00440 144 -KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEG------DMRKAINALQAAAA 209 (319)
T ss_pred -ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHH
Confidence 456789999999999999999999998888776 7889999999999998864 34567777776654
No 173
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.5e-14 Score=159.08 Aligned_cols=204 Identities=21% Similarity=0.234 Sum_probs=149.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccC--CCeEEEEEc
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALM--NRKLISLDM 319 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~-~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~--~~~~~~l~~ 319 (899)
..|.+++||.+|++++|++..++.+.+.+..... +++||+||||+|||++|+.+++.+.+...+.... +..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4688999999999999999999999988876544 4789999999999999999999986633221111 223343332
Q ss_pred ccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChh
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLD 394 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~ 394 (899)
.. . ...+.+..+++++.. .+++.|++|||+|.+. ....+.|...+++. ...+|++|+..
T Consensus 85 ~~------~--~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 85 AS------N--NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------SAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred cc------C--CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------HHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 11 1 112345566665542 2345699999999886 44566777777653 45667666654
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHH
Q 002623 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEA 474 (899)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a 474 (899)
. .+.+++++||..+.+.+|+.+++..++...+.+ +++.++++++..++..+.+ -...+...++..
T Consensus 149 ~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~g------dlr~~~~~lekl 213 (367)
T PRK14970 149 H-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADG------ALRDALSIFDRV 213 (367)
T ss_pred c-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 3 678999999999999999999999888888876 7899999999999998763 344677777766
Q ss_pred HHh
Q 002623 475 AAK 477 (899)
Q Consensus 475 ~~~ 477 (899)
+..
T Consensus 214 ~~y 216 (367)
T PRK14970 214 VTF 216 (367)
T ss_pred HHh
Confidence 644
No 174
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=1.3e-14 Score=159.40 Aligned_cols=165 Identities=16% Similarity=0.287 Sum_probs=118.0
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+++++||++.++.|...+....... .+..+++|+||||||||++|+++++.+ +..+..++++.....
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~----~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~~------ 69 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQ----EALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKP------ 69 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcC----CCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcCc------
Confidence 4579999999999988886543321 122369999999999999999999988 444544443322111
Q ss_pred cCCCCCCcccccccchhHHHh-hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeec--CCC-----ceeeeCCEEEEEec
Q 002623 728 IGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD--SQG-----RTVSFTNTVIIMTS 799 (899)
Q Consensus 728 ~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~--~~g-----~~~~~~~~iiI~tt 799 (899)
+.+...+. ...+.+||||||+.+++..++.|+.+|++..... ..+ .....+.+.+|++|
T Consensus 70 -------------~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 70 -------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred -------------hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11222222 2235699999999999999999999998764321 111 11233567888888
Q ss_pred CCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 800 NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 800 N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
|. ...+.+++++||..++.|.+++.+++.+++...+...
T Consensus 137 ~~------------------------------~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~ 175 (305)
T TIGR00635 137 TR------------------------------AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL 175 (305)
T ss_pred CC------------------------------ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh
Confidence 87 4567888999998899999999999999999877653
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.5e-14 Score=167.23 Aligned_cols=202 Identities=19% Similarity=0.192 Sum_probs=152.0
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcc----cc--------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ----AL-------- 309 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~-~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~----~l-------- 309 (899)
.+|.+++||..|++++|++..++.+...+...+ ..++||+||+|+|||++|+.+|+.+.+..... ..
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 578999999999999999999888888776654 36789999999999999999999997632110 00
Q ss_pred ----CCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC
Q 002623 310 ----MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 382 (899)
Q Consensus 310 ----~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 382 (899)
....++.++.. .+...+.+++++..+... +...|+||||+|.|. ..+++.|+..+++
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEe 147 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEE 147 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhc
Confidence 11134444321 112234566776665432 345699999999997 5678889999986
Q ss_pred --CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCC
Q 002623 383 --GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (899)
Q Consensus 383 --~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~ 460 (899)
+.+++|++|+... .+-+.+++||..+.|..++.++....+..++.+ .++.++++++..++..+.+.
T Consensus 148 Pp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~--- 215 (620)
T PRK14948 148 PPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGG--- 215 (620)
T ss_pred CCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCC---
Confidence 4788888887553 467899999999999999999988888777776 68889999999999998653
Q ss_pred CCChhhHHHHHHHHH
Q 002623 461 RFLPDKAIDLVDEAA 475 (899)
Q Consensus 461 ~~~p~~a~~lld~a~ 475 (899)
+..|..+++...
T Consensus 216 ---lr~A~~lLekls 227 (620)
T PRK14948 216 ---LRDAESLLDQLS 227 (620)
T ss_pred ---HHHHHHHHHHHH
Confidence 356777777643
No 176
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.1e-15 Score=169.17 Aligned_cols=170 Identities=20% Similarity=0.325 Sum_probs=114.6
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC----CceE-Eeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~~-~i~~~~~~~~~ 722 (899)
+++|+||+.+++.|..++...+. + ..+||+||+|||||++|+++|+.+.... .++- .-+|..+....
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl----~----HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRL----H----HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCC
Confidence 56799999999999988864321 1 1489999999999999999999984321 1100 01111111100
Q ss_pred --hhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 723 --AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 723 --~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
++..+-+. ...+..+.+.+...+. ...+.|+||||+|.++...++.|+..||+ ...++.||
T Consensus 86 hpDviEIDAA--s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~~v~FI 152 (702)
T PRK14960 86 FIDLIEIDAA--SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPEHVKFL 152 (702)
T ss_pred CCceEEeccc--ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCCCcEEE
Confidence 00001111 1122222223333322 23467999999999999999999999997 23467888
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
++|+. ...+.+.+++|| .++.|.+++.+++.+.+...+.+.+
T Consensus 153 LaTtd------------------------------~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 153 FATTD------------------------------PQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred EEECC------------------------------hHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC
Confidence 88876 455678899999 9999999999999999988887654
No 177
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=1.5e-14 Score=172.67 Aligned_cols=177 Identities=25% Similarity=0.339 Sum_probs=133.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~i 354 (899)
.+++++|+||||||||+++++++..+ +.+++.++.+.+.. .+.|.....++.+|..+.. ..|+||||
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~~~~--~~~g~~~~~~~~~f~~a~~-~~P~IifI 250 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFVE--MFVGVGASRVRDMFEQAKK-AAPCIIFI 250 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHHhHH--hhhcccHHHHHHHHHHHHh-cCCcEEEe
Confidence 35679999999999999999999998 88999999888764 3677777888999988865 46899999
Q ss_pred ccchhhccCCCCC---chH---HHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecCCCHH
Q 002623 355 DEIHTVVGAGATN---GAM---DAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVE 421 (899)
Q Consensus 355 DEi~~l~~~~~~~---~~~---~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~e 421 (899)
||+|.+...+... +.. ...+.|+..++ +..+.+|+|||.++ .+||++.| ||+ .|.|+.|+.+
T Consensus 251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh-----hcCHHHhCCcccceEEEcCCCCHH
Confidence 9999997654331 111 23333333333 34789999999997 68999998 998 8999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhh
Q 002623 422 DTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (899)
Q Consensus 422 e~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~ 479 (899)
++.+||+.+..+......+ .+..+++.+.+ +.+.....++.+|+..+.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~-----d~~~la~~t~G-----~sgadl~~l~~eAa~~a~ 373 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI-----DAAIIARGTPG-----FSGADLANLVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC-----CHHHHHhhCCC-----CCHHHHHHHHHHHHHHHH
Confidence 9999999888763322222 23345555544 467788888888876543
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.60 E-value=1.2e-14 Score=177.58 Aligned_cols=180 Identities=21% Similarity=0.316 Sum_probs=130.7
Q ss_pred CCcCchHHHHHHHHHhhcC------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc-----
Q 002623 256 PVIGRDDEIRRCIQILSRR------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~~------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 324 (899)
+++|+++..+++.+.+... ...+++|+||||||||++|++||+.+ +.+++.++++.+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 4889999888888755321 23468999999999999999999999 88899888765421
Q ss_pred --cccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-----------------CCe
Q 002623 325 --GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-----------------GEL 385 (899)
Q Consensus 325 --~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v 385 (899)
...|.|....++...+..+.. .+.|+||||||.+.+..+. +..+.|.++|+. +++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~--~~~villDEidk~~~~~~~----~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKT--KNPLFLLDEIDKIGSSFRG----DPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCc--CCCEEEEechhhcCCccCC----CHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 123566666666666665543 2338899999999854322 233445555541 468
Q ss_pred EEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHH-HHhhhh-----CCCCCHHHHHHHHHhccc
Q 002623 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRE-RYELHH-----GVRISDSALVEAAILSDR 456 (899)
Q Consensus 386 ~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~-~~~~~~-----~~~i~~~~l~~~~~ls~~ 456 (899)
.+|+|||... .++++|++||..|.|+.|+.+++.+|++.++. +....+ ++.++++++.++++...+
T Consensus 465 ~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 465 IFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred EEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence 8999999875 68999999999999999999999999976552 222222 467999999988874433
No 179
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=7.5e-15 Score=170.61 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=117.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcce-eEEeccCCCcHHHHHHHHHHHhcCCCC----ceEE-eccccchhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIAS-FMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSEYMEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~-lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~~-i~~~~~~~~ 721 (899)
+++|+||+.+++.|..++...+ +.| +||+||+|||||++|+++|+.++.... ++-. -.|..+...
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r---------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~ 82 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR---------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN 82 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC---------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence 5689999999999999886422 114 799999999999999999999864211 1100 012111110
Q ss_pred ----hhhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCE
Q 002623 722 ----HAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (899)
Q Consensus 722 ----~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 793 (899)
.++..+-+ ....|.++.+.+.+.+. ...+.|+||||+|.++.+.+|.||..||+ ...++
T Consensus 83 ~~~~~dvieida--as~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------pp~~~ 149 (584)
T PRK14952 83 GPGSIDVVELDA--ASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------PPEHL 149 (584)
T ss_pred cCCCceEEEecc--ccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------CCCCe
Confidence 00101111 11223333333333333 24578999999999999999999999997 34578
Q ss_pred EEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 794 iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+||++|+. ...+.+++++|| ..+.|.+++.+++.+.+...+.+.+
T Consensus 150 ~fIL~tte------------------------------~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 150 IFIFATTE------------------------------PEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred EEEEEeCC------------------------------hHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 88888866 456778899999 9999999999999988888887654
No 180
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.59 E-value=4.9e-15 Score=168.72 Aligned_cols=165 Identities=24% Similarity=0.399 Sum_probs=114.5
Q ss_pred ccceeccchHHHHHHHHHHH--------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC-------CCceEE
Q 002623 648 HKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-------EEALVR 712 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-------~~~~~~ 712 (899)
+++|.|.+..++.+...+.. ...|...|+ .+|||||||||||++|+++|+.+... ...|+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~----GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPK----GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCc----ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 45688899999888888753 123444333 49999999999999999999998321 112333
Q ss_pred eccccchhhhhhhhhcCCCCCCccccc--ccchhHHHhh----CCCeEEEEeCCCccCh------------HHHHHHHHh
Q 002623 713 IDMSEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEVVRR----RPYAVILFDEIEKAHS------------DVFNVFLQI 774 (899)
Q Consensus 713 i~~~~~~~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~----~~~~vl~lDEid~l~~------------~~~~~Ll~~ 774 (899)
+..+++. .. |+|..+ .+.++..++. ..++||||||+|.+.. .+.+.|+..
T Consensus 257 v~~~eLl-----~k-------yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 257 IKGPELL-----NK-------YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ccchhhc-----cc-------ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 3333321 11 222211 1233343332 2578999999998632 245778888
Q ss_pred hcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHh--ccceEEecCCC
Q 002623 775 LDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPL 852 (899)
Q Consensus 775 le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~--R~d~~i~f~~l 852 (899)
|+.-. ...++++|+|||. ...++|++++ |||..|.|++|
T Consensus 325 LDgl~---------~~~~ViVI~ATN~------------------------------~d~LDpALlRpGRfD~~I~~~~P 365 (512)
T TIGR03689 325 LDGVE---------SLDNVIVIGASNR------------------------------EDMIDPAILRPGRLDVKIRIERP 365 (512)
T ss_pred hcccc---------cCCceEEEeccCC------------------------------hhhCCHhhcCccccceEEEeCCC
Confidence 87411 2247899999999 6788999996 99999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 002623 853 DRDQISSIVRLQVSF 867 (899)
Q Consensus 853 ~~e~i~~I~~~~l~~ 867 (899)
+.++..+|++.++..
T Consensus 366 d~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 366 DAEAAADIFSKYLTD 380 (512)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999999874
No 181
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.59 E-value=3.9e-15 Score=167.41 Aligned_cols=192 Identities=23% Similarity=0.370 Sum_probs=133.3
Q ss_pred hccceeccchHHHHHHHHHHHH--------HcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (899)
-+.+|.|.+..++.+.+.+... ..|...| . .+||+||||||||++|+++|+.+ +.+|+.+.++++
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p---~-gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL 253 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPP---K-GVILYGPPGTGKTLLAKAVANET---SATFLRVVGSEL 253 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC---c-EEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchh
Confidence 3577899999999999988532 1233322 2 59999999999999999999988 678998888776
Q ss_pred hhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCce
Q 002623 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 719 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~ 787 (899)
... ++|..+. ....++.......++||||||||.+. .+++..++++|..-.-.+
T Consensus 254 ~~k-----~~Ge~~~-----~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~----- 318 (438)
T PTZ00361 254 IQK-----YLGDGPK-----LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD----- 318 (438)
T ss_pred hhh-----hcchHHH-----HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-----
Confidence 332 2232111 11234455556667899999998763 234444544443200000
Q ss_pred eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHH
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQV 865 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l 865 (899)
...++.||+|||. ...++|+++ +|||..|.|++|+.++..+|++.++
T Consensus 319 -~~~~V~VI~ATNr------------------------------~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 319 -SRGDVKVIMATNR------------------------------IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred -ccCCeEEEEecCC------------------------------hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 1236889999998 566778887 6999999999999999999999988
Q ss_pred HHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 866 SFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 866 ~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
.++.. .+.....+++...+..+|..+
T Consensus 368 ~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA 400 (438)
T PTZ00361 368 SKMTLAEDVDLEEFIMAKDELSGADIKAICTEA 400 (438)
T ss_pred hcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 77642 222234578888888888754
No 182
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.4e-14 Score=166.50 Aligned_cols=204 Identities=19% Similarity=0.193 Sum_probs=155.3
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCcc--------------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQ-------------- 307 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~-------------- 307 (899)
..+.++|||..|+++||++..++.+...+......| +||+||+|+|||++|+.+|+.+.+.....
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 357889999999999999999999999887776666 68999999999999999999997532110
Q ss_pred -ccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-
Q 002623 308 -ALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (899)
Q Consensus 308 -~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (899)
......++.+|..+. . ..+.++.++..+.. .++.-|++|||+|.+. .++++.|+..|+.
T Consensus 85 ~~~~~~n~~~ld~~~~------~--~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEep 148 (614)
T PRK14971 85 NEQRSYNIHELDAASN------N--SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEP 148 (614)
T ss_pred hcCCCCceEEeccccc------C--CHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCC
Confidence 111234555543211 1 12345566655542 2345599999999997 6788899999986
Q ss_pred -CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCC
Q 002623 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (899)
Q Consensus 383 -~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~ 461 (899)
...++|++|+... .+-+.+++||..+.|.+++.+++...++.++.+ +++.++++++..++..+++.
T Consensus 149 p~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gd---- 215 (614)
T PRK14971 149 PSYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGG---- 215 (614)
T ss_pred CCCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC----
Confidence 4678888887553 677999999999999999999999888888877 78999999999999998652
Q ss_pred CChhhHHHHHHHHHHh
Q 002623 462 FLPDKAIDLVDEAAAK 477 (899)
Q Consensus 462 ~~p~~a~~lld~a~~~ 477 (899)
...+..+++..+..
T Consensus 216 --lr~al~~Lekl~~y 229 (614)
T PRK14971 216 --MRDALSIFDQVVSF 229 (614)
T ss_pred --HHHHHHHHHHHHHh
Confidence 34677777776544
No 183
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.7e-15 Score=170.72 Aligned_cols=184 Identities=20% Similarity=0.312 Sum_probs=120.9
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC----CceE-Eeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~~-~i~~~~~~~~~ 722 (899)
+++++||+.+++.|..++...+. + . .+||+||+|||||++|+.+|+.++... .++- ...|..+...
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl----~---h-a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~- 85 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKV----H---H-AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN- 85 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----C---e-EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC-
Confidence 56799999999999988864221 1 0 389999999999999999999885311 1110 0011111100
Q ss_pred hhhhhcC-CCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 723 AVSRLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 723 ~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
....++. ......|.++.+.+.+.+.. ..+.|+||||+|+++...++.|+..||+ ....++||+
T Consensus 86 ~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-----------pp~~v~fIL 154 (546)
T PRK14957 86 SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-----------PPEYVKFIL 154 (546)
T ss_pred CCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-----------CCCCceEEE
Confidence 0001110 00122333333344444432 3467999999999999999999999997 234677777
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCC
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPW 877 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~ 877 (899)
+|+. ...+.+.+++|| .++.|.+++.+++...+...+.+.+ .
T Consensus 155 ~Ttd------------------------------~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-------i 196 (546)
T PRK14957 155 ATTD------------------------------YHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-------I 196 (546)
T ss_pred EECC------------------------------hhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-------C
Confidence 7765 455667799999 9999999999999999888887654 3
Q ss_pred ccCHHHHHHhhc
Q 002623 878 HFNYEMLVKFCY 889 (899)
Q Consensus 878 ~~~~~~l~~~~~ 889 (899)
.++++++..++.
T Consensus 197 ~~e~~Al~~Ia~ 208 (546)
T PRK14957 197 NSDEQSLEYIAY 208 (546)
T ss_pred CCCHHHHHHHHH
Confidence 345555444433
No 184
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-14 Score=153.48 Aligned_cols=164 Identities=21% Similarity=0.293 Sum_probs=120.4
Q ss_pred CCCCcCchHHHHHHHHHhhc---------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc
Q 002623 254 LDPVIGRDDEIRRCIQILSR---------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 324 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~---------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~ 324 (899)
|++||-.- .++.-++.|.. .+-+|++||||||||||.+|+.||+.. |..+-.+..+++.
T Consensus 354 l~~ViL~p-sLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----------GlDYA~mTGGDVA- 421 (630)
T KOG0742|consen 354 LEGVILHP-SLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----------GLDYAIMTGGDVA- 421 (630)
T ss_pred cCCeecCH-HHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc----------CCceehhcCCCcc-
Confidence 66766554 34444443322 334689999999999999999999985 5544333222221
Q ss_pred cccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHH-HHHhhhh----c-CCCeEEEEecChhHHHh
Q 002623 325 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAG-NLLKPML----G-RGELRCIGATTLDEYRK 398 (899)
Q Consensus 325 ~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~-~~L~~~l----~-~~~v~~I~at~~~~~~~ 398 (899)
. .-.+-..++.++|++++.+..+.+|||||+|.+...++..+..+.+ ..|..+| + +.+++++.+||.+.
T Consensus 422 P--lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg--- 496 (630)
T KOG0742|consen 422 P--LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--- 496 (630)
T ss_pred c--cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc---
Confidence 0 1123455789999999998889999999999999888766443322 2233333 2 45899999999998
Q ss_pred hhccCHHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhh
Q 002623 399 YIEKDPALERRFQ-QVYVDQPNVEDTISILRGLRERYEL 436 (899)
Q Consensus 399 ~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~ 436 (899)
.+|.++-+||+ .|+|+.|..||+..+|..++++|-.
T Consensus 497 --dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 497 --DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred --chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 78999999998 7999999999999999999998764
No 185
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=8.5e-15 Score=163.45 Aligned_cols=172 Identities=17% Similarity=0.334 Sum_probs=115.9
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcc-eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchh------
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIA-SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME------ 720 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~-~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~------ 720 (899)
|++|+||+.+++.|..++...+........++. .+||+||||+|||++|+.+|+.++..... ...|.....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhc
Confidence 578999999999999999865432222222222 49999999999999999999998543211 012222210
Q ss_pred -hhhhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 721 -KHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 721 -~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
.|....++......++.++.+.+.+.+.. .++.|+||||+|.+++..+|.|++.||+ ...+++|
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~f 150 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTVW 150 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCeE
Confidence 11111112111122333333445555443 3457999999999999999999999997 2345666
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
|++|+. ...+.|++++|| ..+.|++++.+++.+++..
T Consensus 151 IL~a~~------------------------------~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 151 LLCAPS------------------------------PEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred EEEECC------------------------------hHHChHHHHhhC-eEEECCCCCHHHHHHHHHH
Confidence 666665 466789999999 8999999999998877753
No 186
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.1e-15 Score=152.32 Aligned_cols=182 Identities=26% Similarity=0.405 Sum_probs=139.0
Q ss_pred CCCCCcCchHHHHHHHHHhh-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQILS-------------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~-------------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.|+.+-|-...++.+.+.+. -..+..++||||||+|||.+|+++|..+ ++.++.+..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~s 199 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVS 199 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeH
Confidence 67777787777777766541 2445677999999999999999999999 999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCc---hHHHHHHHhhhhc-------CCCeEEEE
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG-------RGELRCIG 389 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~---~~~~~~~L~~~l~-------~~~v~~I~ 389 (899)
+++.+ +|.|+....+++.|..+... .|||||+||||.+.+...+++ ...++..|..+++ -++|.+|+
T Consensus 200 s~lv~--kyiGEsaRlIRemf~yA~~~-~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 200 SALVD--KYIGESARLIRDMFRYAREV-IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred hhhhh--hhcccHHHHHHHHHHHHhhh-CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 99985 49999999999999999874 589999999999886654443 3455555555553 46999999
Q ss_pred ecChhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
|||.+. .++|+|.| |++ .+++|.|....++.|++.....+..+- .+.+++ ++++++++
T Consensus 277 atNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~G--eid~ea---ivK~~d~f 337 (388)
T KOG0651|consen 277 ATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHG--EIDDEA---ILKLVDGF 337 (388)
T ss_pred ecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeeccccccccc--cccHHH---HHHHHhcc
Confidence 999997 79999999 898 789999999988887764444332222 234444 45555544
No 187
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=6.3e-15 Score=146.78 Aligned_cols=187 Identities=22% Similarity=0.362 Sum_probs=133.3
Q ss_pred ccceeccchHHHHHHHHHH--------HHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 648 HKRVVGQDPAVKSVAEAIQ--------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~--------~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
.++|.|.+..++.|.+++. .-..|+++|. .+|+|||||||||.+||+.|... +..|..+-...+
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQL- 241 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQL- 241 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHH-
Confidence 5679999999999999883 2234555544 39999999999999999999876 455554444443
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcC--CeeecCCCc
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDD--GRVTDSQGR 786 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~--g~~~~~~g~ 786 (899)
+..++|.-... .+..+...++..++|+||||+|.+. .++|..+|.+|.. |.-
T Consensus 242 ----VQMfIGdGAkL-----VRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs------ 306 (424)
T KOG0652|consen 242 ----VQMFIGDGAKL-----VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS------ 306 (424)
T ss_pred ----HhhhhcchHHH-----HHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC------
Confidence 33444432211 1334556667778999999998753 5688888777753 211
Q ss_pred eeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHH
Q 002623 787 TVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 787 ~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
+..++.+|++||. -..++|+|+ +|+|..|.||.++.+....|++..
T Consensus 307 --s~~~vKviAATNR------------------------------vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIH 354 (424)
T KOG0652|consen 307 --SDDRVKVIAATNR------------------------------VDILDPALLRSGRLDRKIEFPHPNEEARARILQIH 354 (424)
T ss_pred --CccceEEEeeccc------------------------------ccccCHHHhhcccccccccCCCCChHHHHHHHHHh
Confidence 1236889999998 678899998 799999999999999999999988
Q ss_pred HHHHHh-------hcccCCCccCHHHHHHhhc
Q 002623 865 VSFSKV-------SWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 865 l~~~~~-------~~~~~~~~~~~~~l~~~~~ 889 (899)
-++++. ++..+...|+.......|-
T Consensus 355 sRKMnv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 355 SRKMNVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred hhhcCCCCCCCHHHHhhcccccCchhheeeeh
Confidence 888765 3444445555555444443
No 188
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.58 E-value=1.3e-14 Score=154.93 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=102.4
Q ss_pred CCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh-----hCC
Q 002623 677 RPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-----RRP 751 (899)
Q Consensus 677 ~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-----~~~ 751 (899)
.|. .++|+||||||||.+|+++|+.+ +.+++.++.+++.. .++|.+...+ +.++...+ +..
T Consensus 147 ~Pl-gllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~s-----k~vGEsEk~I-----R~~F~~A~~~a~~~~a 212 (413)
T PLN00020 147 VPL-ILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELES-----ENAGEPGKLI-----RQRYREAADIIKKKGK 212 (413)
T ss_pred CCe-EEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhc-----CcCCcHHHHH-----HHHHHHHHHHhhccCC
Confidence 344 49999999999999999999999 88999999998843 3344332211 23333333 235
Q ss_pred CeEEEEeCCCccChH------------HHHHHHHhhcCCeeecCCC---ceeeeCCEEEEEecCCChhhhhccCCCCCCC
Q 002623 752 YAVILFDEIEKAHSD------------VFNVFLQILDDGRVTDSQG---RTVSFTNTVIIMTSNVGSQYILNMDDETFPK 816 (899)
Q Consensus 752 ~~vl~lDEid~l~~~------------~~~~Ll~~le~g~~~~~~g---~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~ 816 (899)
+|||||||||.+.+. +...|++++|.-....-.| ..-...++.||+|||.
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr--------------- 277 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND--------------- 277 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC---------------
Confidence 799999999986532 2357788887411000001 0112357899999999
Q ss_pred cchHHHHHHHHHHHHHhcCChHHHh--ccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 817 ETAYETIKQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~p~ll~--R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
...++|+|++ |||..+ ..|+.++...|++..+++.
T Consensus 278 ---------------pd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~ 314 (413)
T PLN00020 278 ---------------FSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD 314 (413)
T ss_pred ---------------cccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC
Confidence 7889999996 999875 3678999999999877754
No 189
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.6e-15 Score=149.96 Aligned_cols=187 Identities=23% Similarity=0.415 Sum_probs=139.1
Q ss_pred hccceeccchHHHHHHHHHH--------HHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc
Q 002623 647 LHKRVVGQDPAVKSVAEAIQ--------RSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~--------~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (899)
-..++-|-.+.++.+++.+. ....|+.+|. .+|+|||||||||.+||++|+.. +..|+++-.|++
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppk----gvllygppgtgktl~aravanrt---dacfirvigsel 247 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK----GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSEL 247 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC----ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHH
Confidence 35678888888888888774 2345666554 39999999999999999999876 788999988887
Q ss_pred hhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCce
Q 002623 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 719 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~ 787 (899)
..+ ++|.- ....+.+++..+...-|++||||||.+. .++|..+|.++..-.-.|+.
T Consensus 248 vqk-----yvgeg-----armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--- 314 (435)
T KOG0729|consen 248 VQK-----YVGEG-----ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--- 314 (435)
T ss_pred HHH-----Hhhhh-----HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC---
Confidence 444 34432 2223567777887788999999999754 46888888887653333433
Q ss_pred eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHH
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQV 865 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l 865 (899)
.|+.++++||. ...++|+|+ +|+|..|.|.-++-+-...|++...
T Consensus 315 ---gnikvlmatnr------------------------------pdtldpallrpgrldrkvef~lpdlegrt~i~kiha 361 (435)
T KOG0729|consen 315 ---GNIKVLMATNR------------------------------PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHA 361 (435)
T ss_pred ---CCeEEEeecCC------------------------------CCCcCHhhcCCcccccceeccCCcccccceeEEEec
Confidence 48899999999 778889988 8999999999998887777777666
Q ss_pred HHHHhhcccCCCccCHHHHHHhhccc
Q 002623 866 SFSKVSWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 891 (899)
+.+..+ ..+.-+.+.++|+.+
T Consensus 362 ksmsve-----rdir~ellarlcpns 382 (435)
T KOG0729|consen 362 KSMSVE-----RDIRFELLARLCPNS 382 (435)
T ss_pred cccccc-----cchhHHHHHhhCCCC
Confidence 655533 223346677777754
No 190
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.9e-15 Score=167.50 Aligned_cols=184 Identities=16% Similarity=0.220 Sum_probs=122.4
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ceE-Eeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~~ 722 (899)
+++++||+.+++.|.+++...+. |+ ++||+||+|+|||++|+.+|+.++.... ++- .-+|..+....
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri----~h----a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~ 83 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKI----PQ----SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSN 83 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----Cc----eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccC
Confidence 56799999999999888754321 11 5999999999999999999998742211 110 00111111100
Q ss_pred hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEe
Q 002623 723 AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (899)
Q Consensus 723 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 798 (899)
...-+.-...+..|.++.+.+.+.+.. +.+.|++|||+|.++.+.+|.|+..||+ ..+.++||++
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~~v~fIla 152 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAPHVKFILA 152 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCCCeEEEEE
Confidence 000000011122333333444444443 3467999999999999999999999997 3457888888
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCc
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWH 878 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~ 878 (899)
|+. ...+.+.+++|| ..+.|.+++.+++...+...+.+.+ ..
T Consensus 153 tte------------------------------~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-------i~ 194 (491)
T PRK14964 153 TTE------------------------------VKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-------IE 194 (491)
T ss_pred eCC------------------------------hHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-------CC
Confidence 865 455778899999 9999999999999999888887654 34
Q ss_pred cCHHHHHHhh
Q 002623 879 FNYEMLVKFC 888 (899)
Q Consensus 879 ~~~~~l~~~~ 888 (899)
++++++..++
T Consensus 195 i~~eAL~lIa 204 (491)
T PRK14964 195 HDEESLKLIA 204 (491)
T ss_pred CCHHHHHHHH
Confidence 5555544443
No 191
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8.1e-15 Score=163.98 Aligned_cols=171 Identities=18% Similarity=0.295 Sum_probs=112.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC----Cce-EEeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EAL-VRIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~-~~i~~~~~~~~~ 722 (899)
+++|+||+.+++.+.+++...+. |+ .+||+||||+|||++|+++++.++... .|+ ....|.++....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~----~h----~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRI----HH----AWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCC----Ce----EEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 56799999999999888763221 11 379999999999999999999985321 110 001111111110
Q ss_pred hhhhhcC-CCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 723 AVSRLIG-APPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 723 ~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
.. .++. .+....+....+.+.+.+.. ..+.|++|||+|+++...++.|++.||+ ...+++||+
T Consensus 87 ~~-d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~~~fIl 154 (363)
T PRK14961 87 CL-DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQHIKFIL 154 (363)
T ss_pred CC-ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEE
Confidence 00 0000 00011122222223333322 2357999999999999999999999997 234677888
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+|+. ...+.+.+.+|| ..+.|+|++.+++.+++...+++.+
T Consensus 155 ~t~~------------------------------~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 155 ATTD------------------------------VEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred EcCC------------------------------hHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 7765 345778899999 8999999999999999888877654
No 192
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8e-15 Score=170.91 Aligned_cols=171 Identities=18% Similarity=0.294 Sum_probs=115.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC---------ce-EEecccc
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE---------AL-VRIDMSE 717 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~---------~~-~~i~~~~ 717 (899)
+++|+||+.+++.|.+.+...+. ++ .+||+||+|||||++|+.+|+.++..+. ++ ..-+|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl----~h----a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~ 86 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRL----HH----AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRD 86 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----Ce----EEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHH
Confidence 56789999999999998865321 11 3799999999999999999999954211 10 0111222
Q ss_pred chhhhhhhhhcCC-CCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCC
Q 002623 718 YMEKHAVSRLIGA-PPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (899)
Q Consensus 718 ~~~~~~~~~l~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 792 (899)
+.... ...++-- .....|.++.+.+.+.+.. ..+.|++|||+|.++.+.+|.|+..||+ ...+
T Consensus 87 i~~g~-h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----------PP~~ 154 (618)
T PRK14951 87 IDSGR-FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----------PPEY 154 (618)
T ss_pred HHcCC-CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-----------CCCC
Confidence 21100 0011100 1112233333334444332 3468999999999999999999999997 2346
Q ss_pred EEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 793 ~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
++||++|+. ...+.+.+++|| .++.|.+++.+++...+...+.+.+
T Consensus 155 ~~fIL~Ttd------------------------------~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 155 LKFVLATTD------------------------------PQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred eEEEEEECC------------------------------chhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC
Confidence 788887765 345667799999 9999999999999999988877654
No 193
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.5e-14 Score=174.34 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=115.5
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ceE-Eeccccchhh-
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEK- 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~- 721 (899)
|++|+||+.+++.|...+...+... .+||+||+|||||++|+.|++.++.... ++- .-+|..+...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~H--------a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINH--------AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGG 85 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCc--------eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCC
Confidence 5679999999999999987432211 3899999999999999999999953211 110 0011111100
Q ss_pred ---hhhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEE
Q 002623 722 ---HAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (899)
Q Consensus 722 ---~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 794 (899)
.++..+-+ ....+.++.+.+.+.+. ...+.|+||||+|+|+...+|.||++||+ ...+++
T Consensus 86 ~~~~dv~eida--as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-----------pP~~~~ 152 (824)
T PRK07764 86 PGSLDVTEIDA--ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-----------PPEHLK 152 (824)
T ss_pred CCCCcEEEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-----------CCCCeE
Confidence 00111101 01122222233322222 34678999999999999999999999997 335788
Q ss_pred EEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 795 iI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
||++|+. ...+.+.+++|| .++.|.+++.+++.+++...+++.+
T Consensus 153 fIl~tt~------------------------------~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 153 FIFATTE------------------------------PDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred EEEEeCC------------------------------hhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 8888865 345677899999 9999999999999999988876654
No 194
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=2.1e-14 Score=158.18 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=112.6
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC--CceEEeccccchhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~~~i~~~~~~~~~~~~ 725 (899)
+++++||++++..|...+.. .+.| |++|+||||||||++|+++|+.+++.+ ..++.++.++......+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~-------~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr 82 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARD-------GNMP--NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR 82 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhc-------CCCc--eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHH
Confidence 35688999988888766542 1112 699999999999999999999986543 235555655432221111
Q ss_pred hhcCCC-CCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChh
Q 002623 726 RLIGAP-PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (899)
Q Consensus 726 ~l~g~~-~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~ 804 (899)
..+... .... ......+.|++|||+|.+....|+.|+..||. ....+.||++||.
T Consensus 83 ~~i~~~~~~~~----------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-----------~~~~t~~il~~n~--- 138 (319)
T PLN03025 83 NKIKMFAQKKV----------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI-----------YSNTTRFALACNT--- 138 (319)
T ss_pred HHHHHHHhccc----------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-----------ccCCceEEEEeCC---
Confidence 111000 0000 00012357999999999999999999999985 1235678889987
Q ss_pred hhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
...+.+++.+|| .++.|++++.+++...+...+++.+
T Consensus 139 ---------------------------~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 139 ---------------------------SSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred ---------------------------ccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC
Confidence 456678899999 8999999999999998888777654
No 195
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.3e-15 Score=150.17 Aligned_cols=184 Identities=20% Similarity=0.330 Sum_probs=132.3
Q ss_pred hccceeccchHHHHHHHHHHHH---HcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRS---RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~---~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (899)
-|++|-|.+.++++|.+++..- -.-....++|...+||+|||||||++||+++|... +..|+++..+++
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDL----- 202 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL----- 202 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHH-----
Confidence 3789999999999999998421 11122235566669999999999999999999988 688999888877
Q ss_pred hhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCceeeeCC
Q 002623 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (899)
Q Consensus 724 ~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 792 (899)
++++.|.....+ .+|++..+++.++||||||||.+- ..+-..||--|+ |.-.| ...
T Consensus 203 vSKWmGESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-GVG~d-------~~g 269 (439)
T KOG0739|consen 203 VSKWMGESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GVGND-------NDG 269 (439)
T ss_pred HHHHhccHHHHH-----HHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-ccccC-------CCc
Confidence 566677655444 478999999999999999999864 224444555554 33233 235
Q ss_pred EEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhc
Q 002623 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 872 (899)
Q Consensus 793 ~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~ 872 (899)
+.++.+||. .-.++.++++||+..|.+|-+.......+++..+
T Consensus 270 vLVLgATNi------------------------------Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl------- 312 (439)
T KOG0739|consen 270 VLVLGATNI------------------------------PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHL------- 312 (439)
T ss_pred eEEEecCCC------------------------------chhHHHHHHHHhhcceeccCCcHHHhhhhheecc-------
Confidence 889999998 5567788999998888888887766666655443
Q ss_pred ccCCCccCHHHHHHhh
Q 002623 873 IYSPWHFNYEMLVKFC 888 (899)
Q Consensus 873 ~~~~~~~~~~~l~~~~ 888 (899)
+..+..++++.+..+.
T Consensus 313 G~tp~~LT~~d~~eL~ 328 (439)
T KOG0739|consen 313 GDTPHVLTEQDFKELA 328 (439)
T ss_pred CCCccccchhhHHHHH
Confidence 3334444444444443
No 196
>PRK04132 replication factor C small subunit; Provisional
Probab=99.57 E-value=1.7e-12 Score=155.38 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=104.5
Q ss_pred eeEEec--cCCCcHHHHHHHHHHHhcCC--CCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEE
Q 002623 681 SFMFMG--PTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVIL 756 (899)
Q Consensus 681 ~lLl~G--p~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 756 (899)
+-+..| |++.|||++|++||+.+++. +.+++.+|+++......+...+.....+. .+ ...++.|+|
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~------~~----~~~~~KVvI 635 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK------PI----GGASFKIIF 635 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcC------Cc----CCCCCEEEE
Confidence 467778 99999999999999999775 45799999998644444433322100000 00 012357999
Q ss_pred EeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 002623 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (899)
Q Consensus 757 lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (899)
|||+|.++.+.|++|+..||+ +..++.||++||. ...+.
T Consensus 636 IDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~------------------------------~~kIi 674 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNY------------------------------SSKII 674 (846)
T ss_pred EECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC------------------------------hhhCc
Confidence 999999999999999999996 3357899999998 66778
Q ss_pred hHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 837 PEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 837 p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
|++.+|| .++.|++++.+++...+...+.+.
T Consensus 675 ~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 675 EPIQSRC-AIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred hHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhc
Confidence 8999999 999999999999988887776643
No 197
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.5e-13 Score=160.79 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=147.9
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCC-cc--c----------
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV-PQ--A---------- 308 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~-p~--~---------- 308 (899)
..|.++|||.+|+++||++..++.+...+......| +||+||+|+|||++|+.+|+.+.+... +. .
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 347899999999999999999998888776655555 589999999999999999999865221 10 0
Q ss_pred --cCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-
Q 002623 309 --LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR- 382 (899)
Q Consensus 309 --l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~- 382 (899)
..+..++.++.+.. .+ .+.++.+.+.+.. .....|+||||+|.|. .+.++.|+..+++
T Consensus 84 ~~~~~~d~~~i~~~~~------~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~~a~naLLk~LEep 147 (585)
T PRK14950 84 AEGSAVDVIEMDAASH------TS--VDDAREIIERVQFRPALARYKVYIIDEVHMLS--------TAAFNALLKTLEEP 147 (585)
T ss_pred hcCCCCeEEEEecccc------CC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------HHHHHHHHHHHhcC
Confidence 01123455543211 11 1234444444332 2345699999999997 5667888888886
Q ss_pred -CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCC
Q 002623 383 -GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (899)
Q Consensus 383 -~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~ 461 (899)
...++|.+++... .+.+.+++||..+.|..++.++...++..++.+ .++.++++++..++..+.+
T Consensus 148 p~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~G----- 213 (585)
T PRK14950 148 PPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATG----- 213 (585)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC-----
Confidence 3677777776543 456889999999999999999998888877776 7888999999999998864
Q ss_pred CChhhHHHHHHHHHH
Q 002623 462 FLPDKAIDLVDEAAA 476 (899)
Q Consensus 462 ~~p~~a~~lld~a~~ 476 (899)
-+..++..++..+.
T Consensus 214 -dlr~al~~LekL~~ 227 (585)
T PRK14950 214 -SMRDAENLLQQLAT 227 (585)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35577777776554
No 198
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.57 E-value=1.2e-14 Score=163.86 Aligned_cols=207 Identities=18% Similarity=0.264 Sum_probs=164.7
Q ss_pred eccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCC
Q 002623 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP 731 (899)
Q Consensus 652 ~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~ 731 (899)
++.+..+..+...+++...... ++++.|.|||||-.+||+|++..- ...||+.+||..+.+....+.+||..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~-------pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDL-------PVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCC-------CeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 4666666666666655432111 499999999999999999999987 78899999999999998889999987
Q ss_pred CC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccC
Q 002623 732 PG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMD 810 (899)
Q Consensus 732 ~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~ 810 (899)
+| ++|....+ -.+.+.+++++.+|+|||..++-..|..||++|++|.++--.|.. ..-++.||.+|+.+...+..
T Consensus 388 ~GafTga~~kG-~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~-- 463 (606)
T COG3284 388 AGAFTGARRKG-YKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE-- 463 (606)
T ss_pred ccccccchhcc-ccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH--
Confidence 76 34432222 236677889999999999999999999999999999988766666 55689999999996655544
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC-HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhh
Q 002623 811 DETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD-RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFC 888 (899)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~-~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 888 (899)
.+.|+..|++|+.. .|.+|||. ..|....+.+++.+... ....++.+++..+.
T Consensus 464 ---------------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~----~~~~l~~~~~~~l~ 518 (606)
T COG3284 464 ---------------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND----WRLQLDDDALARLL 518 (606)
T ss_pred ---------------------cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC----CCccCCHHHHHHHH
Confidence 78999999999954 79999998 34555566666666553 55788999999999
Q ss_pred ccccccc
Q 002623 889 YLAFTIR 895 (899)
Q Consensus 889 ~~~~~~~ 895 (899)
.+.|+.+
T Consensus 519 ~~~WPGN 525 (606)
T COG3284 519 AYRWPGN 525 (606)
T ss_pred hCCCCCc
Confidence 9999854
No 199
>CHL00176 ftsH cell division protein; Validated
Probab=99.56 E-value=1.9e-14 Score=169.60 Aligned_cols=190 Identities=22% Similarity=0.317 Sum_probs=131.6
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCC----CCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~----~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (899)
+++|.|.+++++.+...+...+.... ....|. ++||+||||||||++|+++|..+ +.+|+.++|+++...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~-gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~-- 255 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPK-GVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM-- 255 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH--
Confidence 46788888888888777644322111 011233 59999999999999999999988 789999999987432
Q ss_pred hhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------h---HHHHHHHHhhcCCeeecCCCceee
Q 002623 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------S---DVFNVFLQILDDGRVTDSQGRTVS 789 (899)
Q Consensus 724 ~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~---~~~~~Ll~~le~g~~~~~~g~~~~ 789 (899)
+.|. +......++...+...++||||||||.+. . .+++.|+..|+.-. .
T Consensus 256 ---~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~---------~ 318 (638)
T CHL00176 256 ---FVGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK---------G 318 (638)
T ss_pred ---hhhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc---------C
Confidence 1221 11112334555566778999999999873 2 24555666665310 1
Q ss_pred eCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHHH
Q 002623 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 790 ~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
..++++|+|||. ...++|+++ +|||..|.|++|+.++...|++.++.+
T Consensus 319 ~~~ViVIaaTN~------------------------------~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 319 NKGVIVIAATNR------------------------------VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred CCCeeEEEecCc------------------------------hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 246899999998 556677787 599999999999999999999998876
Q ss_pred HHh-------hcccCCCccCHHHHHHhhcc
Q 002623 868 SKV-------SWIYSPWHFNYEMLVKFCYL 890 (899)
Q Consensus 868 ~~~-------~~~~~~~~~~~~~l~~~~~~ 890 (899)
... .+.....+++...|..+|..
T Consensus 369 ~~~~~d~~l~~lA~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 369 KKLSPDVSLELIARRTPGFSGADLANLLNE 398 (638)
T ss_pred cccchhHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 321 22233456777777777764
No 200
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1.2e-14 Score=170.31 Aligned_cols=171 Identities=22% Similarity=0.387 Sum_probs=118.8
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch---hhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM---EKHAV 724 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~---~~~~~ 724 (899)
+.+|+||+.+++.|..++...+. ++ .+||+||+|+|||++|+++|+.++........-.|..+. +.+ .
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl----~H----AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~-~ 87 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKI----SH----AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS-L 87 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----Ce----EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC-C
Confidence 56799999999999999864321 11 389999999999999999999985432111111122221 110 0
Q ss_pred hhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecC
Q 002623 725 SRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (899)
Q Consensus 725 ~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN 800 (899)
.-+.+...+..|..+.+.+.+.+.. ..+.|++|||+|.+....+++|+..||+ +...++||++|+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tifILaTt 156 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIFILATT 156 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEEEEEcC
Confidence 0011111122333334455555553 3468999999999999999999999997 335678888876
Q ss_pred CChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
. ...+.+.+++|| +.+.|.+++.+++..++...+.+.+
T Consensus 157 e------------------------------~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 157 E------------------------------VHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred C------------------------------hhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC
Confidence 5 456778899999 8999999999999999888776654
No 201
>PHA02244 ATPase-like protein
Probab=99.56 E-value=5.3e-13 Score=144.13 Aligned_cols=204 Identities=12% Similarity=0.113 Sum_probs=131.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
....+|....+......+.++..... ++||+||||||||++|++||..+ +.+|+.++. +.+ ...+
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~-------PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~L 159 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANI-------PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFEL 159 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCC-------CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHhh
Confidence 34566777777766666654432211 49999999999999999999998 788998873 221 2233
Q ss_pred cCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhh
Q 002623 728 IGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (899)
Q Consensus 728 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~ 807 (899)
.|.... .|....+.+..+++ .+++|||||++.++++++..|+.+++++.+....+....++++.+|+|+|+....+.
T Consensus 160 ~G~i~~-~g~~~dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~ 236 (383)
T PHA02244 160 KGFIDA-NGKFHETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGAD 236 (383)
T ss_pred cccccc-cccccchHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcc
Confidence 442211 11222234555543 467999999999999999999999998876665555445689999999999543321
Q ss_pred ccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHH--HHHHHHHh----hc--ccCCCcc
Q 002623 808 NMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR--LQVSFSKV----SW--IYSPWHF 879 (899)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~--~~l~~~~~----~~--~~~~~~~ 879 (899)
....| .+.+++++++|| .+|.|..++..+. .|+. ..+-++.. .+ ..-.+.+
T Consensus 237 ~~y~G-------------------~k~L~~AllDRF-v~I~~dyp~~~E~-~i~~~~~~lv~~a~~lR~~~~~~~l~~~~ 295 (383)
T PHA02244 237 HIYVA-------------------RNKIDGATLDRF-APIEFDYDEKIEH-LISNGDEDLVNFVALLRHEMAEKGLDHVF 295 (383)
T ss_pred cccCC-------------------CcccCHHHHhhc-EEeeCCCCcHHHH-HHhhhHHHHHHHHHHHHHHHhcCCCCccc
Confidence 10000 467899999999 7899998874333 2322 12222221 12 2235677
Q ss_pred CHHHHHHhhcc
Q 002623 880 NYEMLVKFCYL 890 (899)
Q Consensus 880 ~~~~l~~~~~~ 890 (899)
|...+..+...
T Consensus 296 StR~li~~a~~ 306 (383)
T PHA02244 296 SMRAIIHGKKF 306 (383)
T ss_pred cHHHHHHHHHh
Confidence 77776555443
No 202
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.6e-14 Score=165.26 Aligned_cols=182 Identities=19% Similarity=0.340 Sum_probs=120.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc------hhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------MEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~~ 721 (899)
+++|+||+.+++.|.+++...+. + + .+||+||+|||||++|+.+|+.++..... ....|... ...
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri----~--h--a~Lf~GPpG~GKTtiArilAk~L~C~~~~-~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRV----A--P--AYLFSGTRGVGKTTIARIFAKALNCETAP-TGEPCNTCEQCRKVTQG 85 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCC----C--c--eEEEECCCCCCHHHHHHHHHHhccccCCC-CCCCCcccHHHHHHhcC
Confidence 56789999999999888764221 1 1 59999999999999999999999542110 00012111 000
Q ss_pred -h-hhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 -H-AVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 -~-~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
+ ++..+-+. ...+.+..+.+.+.+. ...+.||||||+|.++.+.++.|++.||+ ...+++|
T Consensus 86 ~hpDv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~~~~if 152 (624)
T PRK14959 86 MHVDVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PPARVTF 152 (624)
T ss_pred CCCceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cCCCEEE
Confidence 0 00011111 1122222233333333 23468999999999999999999999997 2346888
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccC
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS 875 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~ 875 (899)
|++||. ...+.+.+++|| .+|.|++++.+++..++...+.+.+
T Consensus 153 ILaTt~------------------------------~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg------ 195 (624)
T PRK14959 153 VLATTE------------------------------PHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG------ 195 (624)
T ss_pred EEecCC------------------------------hhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC------
Confidence 888876 456667889999 7899999999999999888776543
Q ss_pred CCccCHHHHHHhhc
Q 002623 876 PWHFNYEMLVKFCY 889 (899)
Q Consensus 876 ~~~~~~~~l~~~~~ 889 (899)
..++++++..+..
T Consensus 196 -i~id~eal~lIA~ 208 (624)
T PRK14959 196 -VDYDPAAVRLIAR 208 (624)
T ss_pred -CCCCHHHHHHHHH
Confidence 3355555544444
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=1e-13 Score=148.00 Aligned_cols=163 Identities=21% Similarity=0.337 Sum_probs=114.4
Q ss_pred HHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHH----H-HHH-
Q 002623 264 IRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE----D-RLK- 337 (899)
Q Consensus 264 i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~----~-~l~- 337 (899)
+++++..+. ...+++|+||||||||++|+++|+.+ |.+++.+++..-.......|... . ...
T Consensus 11 ~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~ 78 (262)
T TIGR02640 11 TSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQ 78 (262)
T ss_pred HHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHH
Confidence 334444433 34689999999999999999999987 88999998765332221112110 0 000
Q ss_pred ------------------HHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC----------------
Q 002623 338 ------------------AVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------- 383 (899)
Q Consensus 338 ------------------~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------- 383 (899)
..+..+. ..+.+|+|||++.+. .++++.|..+|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~l~~A~--~~g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~ 148 (262)
T TIGR02640 79 FIHNVVKLEDIVRQNWVDNRLTLAV--REGFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYVDV 148 (262)
T ss_pred HHHHhhhhhcccceeecCchHHHHH--HcCCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceEec
Confidence 0111222 234699999999987 77888899988643
Q ss_pred --CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 384 --ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 384 --~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
++++|+|+|+..|.....++++|.+||..+.++.|+.++..+|++... .++++..+.++++....
T Consensus 149 ~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~~ 215 (262)
T TIGR02640 149 HPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVREF 215 (262)
T ss_pred CCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHHH
Confidence 567999999987766667799999999999999999999888877432 34677777777766443
No 204
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.2e-14 Score=167.96 Aligned_cols=201 Identities=26% Similarity=0.388 Sum_probs=150.1
Q ss_pred CCCCCcCchHHHHHHHHHh-------------hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc
Q 002623 253 KLDPVIGRDDEIRRCIQIL-------------SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 319 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l-------------~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 319 (899)
.|+++-|-+..+..+.+.. .-.+++.+||+||||||||..|+++|..+.++. ...-++.-+.
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrkg 337 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRKG 337 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhhcC
Confidence 5666666666555444422 235678899999999999999999999986643 1223333333
Q ss_pred ccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCC---chHHHHHHHhhhhc----CCCeEEEEecC
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPMLG----RGELRCIGATT 392 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~----~~~v~~I~at~ 392 (899)
.+.. ++|+|+.+..++-+|++++.. .|.|+|+|||+-|.+.+... ....+...|+.+|+ +|.+++|||||
T Consensus 338 aD~l--skwvgEaERqlrllFeeA~k~-qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCL--SKWVGEAERQLRLLFEEAQKT-QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhh--ccccCcHHHHHHHHHHHHhcc-CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 3344 569999999999999999864 69999999999998877543 23445666777774 88999999999
Q ss_pred hhHHHhhhccCHHHHc--cCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHH
Q 002623 393 LDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (899)
Q Consensus 393 ~~~~~~~~~~d~al~~--Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~ 469 (899)
+++ .+||+++| ||+ .++|+.|+.+.+.+|+.....++. -.++...+..+++.+.+|... +...
T Consensus 415 Rpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~----~~i~~~l~~~la~~t~gy~ga-----Dlka 480 (1080)
T KOG0732|consen 415 RPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE----PPISRELLLWLAEETSGYGGA-----DLKA 480 (1080)
T ss_pred Ccc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC----CCCCHHHHHHHHHhccccchH-----HHHH
Confidence 998 68999999 998 899999999999999986655532 456778888889988887543 3444
Q ss_pred HHHHHH
Q 002623 470 LVDEAA 475 (899)
Q Consensus 470 lld~a~ 475 (899)
++-+|+
T Consensus 481 LCTeAa 486 (1080)
T KOG0732|consen 481 LCTEAA 486 (1080)
T ss_pred HHHHHh
Confidence 554444
No 205
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-14 Score=171.41 Aligned_cols=170 Identities=22% Similarity=0.362 Sum_probs=118.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ce-EEeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----AL-VRIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~-~~i~~~~~~~~~ 722 (899)
+++|+||+.+++.|.+.+...+. ++ .+||+||+|+|||++|+.+++.++.... ++ ..-.|.++....
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~----~h----ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRV----AH----AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC----Ce----EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 57899999999999988864221 11 3799999999999999999999854211 11 011122211111
Q ss_pred hh--hhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 723 AV--SRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 723 ~~--~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
.. ..+-| .+..|.++.+.+.+.+.. ..+.|+||||+|.++...+|.|+..||+ ...+++||
T Consensus 87 ~~d~~eid~--~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~~~~fI 153 (576)
T PRK14965 87 SVDVFEIDG--ASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPPHVKFI 153 (576)
T ss_pred CCCeeeeec--cCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCCCeEEE
Confidence 11 01111 112233333444444443 3468999999999999999999999997 34578888
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
++||. ...+.+.+++|| ..+.|.+++.+++...+...+.+.+
T Consensus 154 l~t~~------------------------------~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 154 FATTE------------------------------PHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred EEeCC------------------------------hhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 88876 456778899999 8999999999999988888887654
No 206
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.8e-12 Score=133.26 Aligned_cols=169 Identities=17% Similarity=0.256 Sum_probs=112.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+..||-.....+.|.. +....++....+.|..++|||||||||||++|+.||... +..+-.+..+++.
T Consensus 354 l~~ViL~psLe~Rie~-lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVA-------- 421 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIED-LAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVA-------- 421 (630)
T ss_pred cCCeecCHHHHHHHHH-HHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCcc--------
Confidence 3455554444344333 223344445556677789999999999999999999988 5555444444431
Q ss_pred cCCCCCCcccccccchhHHHhhCC-CeEEEEeCCCc---------cChHHHHHHHHhh-cCCeeecCCCceeeeCCEEEE
Q 002623 728 IGAPPGYVGYEEGGQLTEVVRRRP-YAVILFDEIEK---------AHSDVFNVFLQIL-DDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 728 ~g~~~~~~g~~~~~~l~~~~~~~~-~~vl~lDEid~---------l~~~~~~~Ll~~l-e~g~~~~~~g~~~~~~~~iiI 796 (899)
|-|.-+......++...++.. +=+|||||+|. ++.....+|..+| ..|. ...+++++
T Consensus 422 ---PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd---------qSrdivLv 489 (630)
T KOG0742|consen 422 ---PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------QSRDIVLV 489 (630)
T ss_pred ---ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc---------cccceEEE
Confidence 222222222234555555443 44899999986 3444444444333 2221 23578999
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHh
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV 870 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~ 870 (899)
++||. ++.|+.+.-+|||++|.|+-|..++..+++..||+++-.
T Consensus 490 lAtNr------------------------------pgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 490 LATNR------------------------------PGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred eccCC------------------------------ccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 99999 778888999999999999999999999999999999864
No 207
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=3.2e-14 Score=162.59 Aligned_cols=182 Identities=23% Similarity=0.340 Sum_probs=117.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc------hhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------MEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~~ 721 (899)
+++++||+.++..|...+...+ -| ..+||+||||||||++|+++|+.+.....+. ...|... ...
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-------l~-~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~-~~pc~~c~~c~~i~~g 83 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-------IS-HAYIFAGPRGTGKTTVARILAKSLNCENRKG-VEPCNECRACRSIDEG 83 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-------CC-eEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCCCcccHHHHHHhcC
Confidence 5679999999888887765321 11 1489999999999999999999985321110 0111111 000
Q ss_pred h--hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 H--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 ~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
. .+..+ .+ ....|..+.+.+.+.+.. ..+.||||||+|.+..+.++.|+..|++ ...+++|
T Consensus 84 ~~~dv~el-~a-a~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p~~~vv~ 150 (472)
T PRK14962 84 TFMDVIEL-DA-ASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------PPSHVVF 150 (472)
T ss_pred CCCccEEE-eC-cccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------CCCcEEE
Confidence 0 00001 00 011122222223333332 2457999999999999999999999986 2246777
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccC
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS 875 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~ 875 (899)
|++|+. ...+.+++.+|| .++.|.+++.+++..+++..+...+
T Consensus 151 Ilattn------------------------------~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg------ 193 (472)
T PRK14962 151 VLATTN------------------------------LEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG------ 193 (472)
T ss_pred EEEeCC------------------------------hHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC------
Confidence 777664 345678899999 8999999999999999888876543
Q ss_pred CCccCHHHHHHhhc
Q 002623 876 PWHFNYEMLVKFCY 889 (899)
Q Consensus 876 ~~~~~~~~l~~~~~ 889 (899)
..++++++..++.
T Consensus 194 -i~i~~eal~~Ia~ 206 (472)
T PRK14962 194 -IEIDREALSFIAK 206 (472)
T ss_pred -CCCCHHHHHHHHH
Confidence 3456666555544
No 208
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.55 E-value=7.6e-15 Score=165.72 Aligned_cols=171 Identities=24% Similarity=0.400 Sum_probs=128.1
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC----CceEE-eccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALVR-IDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~~~-i~~~~~~~~~ 722 (899)
|.+++||+.+++.|.+++...+.... +||+||.|||||++||.+|+.++..+ .|+.. ..|-++...
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hA--------YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g- 85 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHA--------YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEG- 85 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhh--------hhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcC-
Confidence 56789999999999999986554332 99999999999999999999995432 22211 112122111
Q ss_pred hhhhhcCC-CCCCcccccccchhHHHhhC----CCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 723 AVSRLIGA-PPGYVGYEEGGQLTEVVRRR----PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 723 ~~~~l~g~-~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
....++-- ..+..|.++.+.+.+.+... .+.|++|||+|.++...+|+||..||+ ++.+++||+
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~FIl 154 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKFIL 154 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEEEE
Confidence 01111110 12244566666666666643 478999999999999999999999998 667899999
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+|.- ...+++.+++|| +.+.|..++.++|...+...+.+.+
T Consensus 155 ATTe------------------------------~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 155 ATTE------------------------------PQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred ecCC------------------------------cCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC
Confidence 8877 688999999999 9999999999999988888887655
No 209
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.54 E-value=5.4e-14 Score=161.31 Aligned_cols=223 Identities=18% Similarity=0.262 Sum_probs=138.1
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
++++.||+.+++.+..++ .+.+ +++|.||||||||++|+.++..+.... .-..+++..+.. ....
T Consensus 191 ~~dv~Gq~~~~~al~~aa----~~g~-------~vlliG~pGsGKTtlar~l~~llp~~~-~~~~le~~~i~s---~~g~ 255 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAA----AGGH-------NLLLFGPPGSGKTMLASRLQGILPPLT-NEEAIETARIWS---LVGK 255 (499)
T ss_pred HHHhcCcHHHHhhhhhhc----cCCC-------EEEEEecCCCCHHHHHHHHhcccCCCC-CcEEEecccccc---chhh
Confidence 356899998877665543 2222 699999999999999999998774321 112233322211 0000
Q ss_pred c------CC-----------CCCCccccccc--chhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cce
Q 002623 728 I------GA-----------PPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRT 787 (899)
Q Consensus 728 ~------g~-----------~~~~~g~~~~~--~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~ 787 (899)
+ .. ....+| ++ .-.+.+..++++||||||++.+++.+++.|++.||+|.++... |..
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~g---gg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~ 332 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVG---GGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAK 332 (499)
T ss_pred hccccccccCCccccccccchhhhhC---CccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcc
Confidence 0 00 000111 11 2245677888999999999999999999999999999875433 333
Q ss_pred eee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHH--------
Q 002623 788 VSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQIS-------- 858 (899)
Q Consensus 788 ~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~-------- 858 (899)
..+ .++.+|+++|++++...+ .....+.|...-..++ ..+++.+|++|||.++.+++++.+++.
T Consensus 333 ~~~pa~frlIaa~Npcpcg~~~---~~~~~c~c~~~~~~~y----~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s 405 (499)
T TIGR00368 333 IFYPARFQLVAAMNPCPCGHYG---GKNTHCRCSPQQISRY----WNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESS 405 (499)
T ss_pred eeccCCeEEEEecCCcccCcCC---CCcccccCCHHHHHHH----hhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCH
Confidence 333 699999999998654322 1122233433333333 568999999999999999998765542
Q ss_pred ----HHHHHHHHHHHhhccc-----CCCccCHHHHHHhhccccccc
Q 002623 859 ----SIVRLQVSFSKVSWIY-----SPWHFNYEMLVKFCYLAFTIR 895 (899)
Q Consensus 859 ----~I~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~ 895 (899)
+-+...-.....+|.. .+..++...+.++|.++-..+
T Consensus 406 ~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~ 451 (499)
T TIGR00368 406 AEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDA 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHH
Confidence 2222221222223322 155677888888887654433
No 210
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.4e-14 Score=167.88 Aligned_cols=183 Identities=18% Similarity=0.265 Sum_probs=120.9
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc------hhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------MEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~~ 721 (899)
+++|+||+.+++.|.+++...+. + -.+||+||+|||||++|+++++.++.... .....|... ...
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl----~----Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRL----H----HAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccHHHHHHhcc
Confidence 56799999999999998864221 1 14899999999999999999999854321 101112111 100
Q ss_pred hhhhhhcC-CCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 722 HAVSRLIG-APPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 722 ~~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
. ...++. ......|....+.+...+. ...+.||||||+|.++...++.|++.||+ ...+++||
T Consensus 86 ~-~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~v~fI 153 (709)
T PRK08691 86 R-YVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFI 153 (709)
T ss_pred C-ccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCCcEEE
Confidence 0 000000 0011122222222333222 23468999999999999999999999996 23467888
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCC
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSP 876 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~ 876 (899)
++||. ...+.+.+++|| ..+.|.+++.+++...+...+.+.+
T Consensus 154 LaTtd------------------------------~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg------- 195 (709)
T PRK08691 154 LATTD------------------------------PHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK------- 195 (709)
T ss_pred EEeCC------------------------------ccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-------
Confidence 88876 456678899999 8899999999999999988887654
Q ss_pred CccCHHHHHHhhc
Q 002623 877 WHFNYEMLVKFCY 889 (899)
Q Consensus 877 ~~~~~~~l~~~~~ 889 (899)
..++++++..++.
T Consensus 196 i~id~eAL~~Ia~ 208 (709)
T PRK08691 196 IAYEPPALQLLGR 208 (709)
T ss_pred CCcCHHHHHHHHH
Confidence 3445555444443
No 211
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3.2e-14 Score=162.98 Aligned_cols=170 Identities=16% Similarity=0.256 Sum_probs=116.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC--------c-eEEeccccc
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--------A-LVRIDMSEY 718 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--------~-~~~i~~~~~ 718 (899)
+.+++||+.+++.|..++...+. + .++||+||+|||||++|+++|+.+..... + ...-+|..+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri----~----~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i 91 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRL----A----GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISF 91 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----C----ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHH
Confidence 56799999999999888754221 1 15999999999999999999999953210 0 111122222
Q ss_pred hhhh--hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCC
Q 002623 719 MEKH--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (899)
Q Consensus 719 ~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 792 (899)
.+.. ++.. +.. .+..|..+.+.+.+.+.. ..+.|+||||+|.++...++.|+..||+ ....
T Consensus 92 ~~~~h~Dv~e-ida-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-----------pp~~ 158 (507)
T PRK06645 92 NNHNHPDIIE-IDA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-----------PPPH 158 (507)
T ss_pred hcCCCCcEEE-eec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-----------cCCC
Confidence 1110 0011 111 112233333333344432 3468999999999999999999999996 3357
Q ss_pred EEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 793 ~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
++||++|+. ...+.+++.+|| ..+.|.+++.+++..++...+++.+
T Consensus 159 ~vfI~aTte------------------------------~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg 204 (507)
T PRK06645 159 IIFIFATTE------------------------------VQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN 204 (507)
T ss_pred EEEEEEeCC------------------------------hHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC
Confidence 888888765 445778899999 8999999999999999999888654
No 212
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.54 E-value=2.3e-13 Score=152.74 Aligned_cols=187 Identities=25% Similarity=0.328 Sum_probs=128.2
Q ss_pred CcCchHHHHHHHHHh----hc------------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcc
Q 002623 257 VIGRDDEIRRCIQIL----SR------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMG 320 (899)
Q Consensus 257 iiG~~~~i~~~~~~l----~~------------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 320 (899)
+|||+..++.+...+ .+ ..+.|+||+||||||||++|+++|..+ +.+++.+|++
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~ 142 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADAT 142 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchh
Confidence 899999888775443 11 134789999999999999999999998 8899999998
Q ss_pred cccccccccchH-HHHHHHHHHHH---HhhCCCeEEEEccchhhccCCCCC------chHHHHHHHhhhhcCC-------
Q 002623 321 ALIAGAKYRGEF-EDRLKAVLKEV---TESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGRG------- 383 (899)
Q Consensus 321 ~l~~~~~~~g~~-~~~l~~l~~~~---~~~~~~~IL~iDEi~~l~~~~~~~------~~~~~~~~L~~~l~~~------- 383 (899)
.+.. ..|.|+. +..+..++... .....++||||||||.+...+.+. +...+++.|+++|+..
T Consensus 143 ~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 143 TLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 8653 3477763 33334443321 112357899999999998653221 2246888899998632
Q ss_pred --------CeEEEEecCh--------h-------------------------------HHH--------hhhccCHHHHc
Q 002623 384 --------ELRCIGATTL--------D-------------------------------EYR--------KYIEKDPALER 408 (899)
Q Consensus 384 --------~v~~I~at~~--------~-------------------------------~~~--------~~~~~d~al~~ 408 (899)
+.++|.|+|. . .+. ..+.+.|+|..
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 2234555443 0 000 01124799999
Q ss_pred cCc-eEEecCCCHHHHHHHHH----HHHHHHhhh---h--CCCCCHHHHHHHHHhc
Q 002623 409 RFQ-QVYVDQPNVEDTISILR----GLRERYELH---H--GVRISDSALVEAAILS 454 (899)
Q Consensus 409 Rf~-~i~~~~ps~ee~~~Il~----~~~~~~~~~---~--~~~i~~~~l~~~~~ls 454 (899)
|++ .+.|.+.+.+++.+|+. .+.++|... . .+.++++++.++++.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 998 67888889999999997 455554422 2 4579999999999874
No 213
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=6.9e-14 Score=163.79 Aligned_cols=171 Identities=20% Similarity=0.336 Sum_probs=117.5
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ceEE-eccccchhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALVR-IDMSEYMEK 721 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~~-i~~~~~~~~ 721 (899)
.+++++||+.+++.|.+++...+.+ + .+||+||+|||||++|+.+|+.+..... |+-. -+|..+...
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~----h----ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKIS----H----AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNG 85 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCC----e----EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcC
Confidence 3578999999999999998753211 1 3899999999999999999999854221 1100 011111110
Q ss_pred h--hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 H--AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 ~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
. ++..+-+ .+..|..+.+.+.+.+.. +.+.|++|||+|.+....+|.|+..||+ ...+++|
T Consensus 86 ~~~dv~eida--as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~~~if 152 (559)
T PRK05563 86 SLMDVIEIDA--ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPAHVIF 152 (559)
T ss_pred CCCCeEEeec--cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCCCeEE
Confidence 0 0000001 111233333344444442 3468999999999999999999999997 3357888
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
|++|+. ...+.+.+++|| ..+.|.+++.+++..++...+.+.+
T Consensus 153 Ilatt~------------------------------~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 153 ILATTE------------------------------PHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred EEEeCC------------------------------hhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC
Confidence 888765 456788999999 7899999999999999888887654
No 214
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-13 Score=156.14 Aligned_cols=178 Identities=20% Similarity=0.337 Sum_probs=130.5
Q ss_pred CCcCchHHHHHHHHHhhc-----CCC-CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc-----
Q 002623 256 PVIGRDDEIRRCIQILSR-----RTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~-----~~~-~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 324 (899)
+=.|.++.-+++++.|.- ..+ .-++|+||||||||+|++.||+.+ |.+|+++.++.+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 357888888888887732 122 335899999999999999999999 99999999887632
Q ss_pred ccc--ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc-----------------CCCe
Q 002623 325 GAK--YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-----------------RGEL 385 (899)
Q Consensus 325 ~~~--~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-----------------~~~v 385 (899)
|.+ |.|..-.++-+-+..+... +-+++|||||.+...-.+ |-...|+.+|+ =.+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~--NPv~LLDEIDKm~ss~rG----DPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVK--NPVFLLDEIDKMGSSFRG----DPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccccCChHHHHHHHHhCCc--CCeEEeechhhccCCCCC----ChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 222 6677766666666655443 338889999999754332 22334556653 1288
Q ss_pred EEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHH-HHHHhhhhC-----CCCCHHHHHHHHHhc
Q 002623 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGL-RERYELHHG-----VRISDSALVEAAILS 454 (899)
Q Consensus 386 ~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~-~~~~~~~~~-----~~i~~~~l~~~~~ls 454 (899)
.||+|+|.-+ .++.+|++|+..|.+.-++.+|..+|.+.+ ..+....++ +.|+++++..+++.-
T Consensus 468 mFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y 537 (782)
T COG0466 468 MFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY 537 (782)
T ss_pred EEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence 9999999886 689999999999999999999999998644 344333444 568888887776554
No 215
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.7e-14 Score=167.78 Aligned_cols=185 Identities=18% Similarity=0.271 Sum_probs=120.8
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhh-----
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH----- 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~----- 722 (899)
+++|+||+.+++.|.+++...+. ++ .+||+||+|||||++|+.+|+.++.... ...-.|.....-.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~----~h----a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pcg~C~~C~~i~~~ 85 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRL----HH----AYLFTGTRGVGKTTLARILAKSLNCETG-VTATPCGVCSACLEIDSG 85 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----CE----EEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHhcC
Confidence 56799999999999988864321 11 3799999999999999999999954211 0001122210000
Q ss_pred hhhhhcCCC-CCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 723 AVSRLIGAP-PGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 723 ~~~~l~g~~-~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
....++... .+..+.+..+.+.+.+.. ..+.|+||||+|+++.+.+|.|++.||+ ...+++||+
T Consensus 86 ~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~~~fIL 154 (527)
T PRK14969 86 RFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFIL 154 (527)
T ss_pred CCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCCEEEEE
Confidence 000111000 112222222333333332 3457999999999999999999999997 234678888
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCC
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPW 877 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~ 877 (899)
+|+. ...+.+.+++|| .++.|.+++.+++.+.+...+.+.+ .
T Consensus 155 ~t~d------------------------------~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-------i 196 (527)
T PRK14969 155 ATTD------------------------------PQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-------I 196 (527)
T ss_pred EeCC------------------------------hhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-------C
Confidence 8765 456667799999 9999999999999988888776543 3
Q ss_pred ccCHHHHHHhhcc
Q 002623 878 HFNYEMLVKFCYL 890 (899)
Q Consensus 878 ~~~~~~l~~~~~~ 890 (899)
.++++++..++..
T Consensus 197 ~~~~~al~~la~~ 209 (527)
T PRK14969 197 PFDATALQLLARA 209 (527)
T ss_pred CCCHHHHHHHHHH
Confidence 3455555444443
No 216
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=4.5e-14 Score=161.70 Aligned_cols=172 Identities=17% Similarity=0.329 Sum_probs=115.0
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ce-EEeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----AL-VRIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~-~~i~~~~~~~~~ 722 (899)
+++++||+.+++.|...+...+. |+ .+||+||+|+|||++|+++++.++.... ++ ..-+|..+....
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl----~h----ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~ 84 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRL----AH----AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENR 84 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC----Ce----eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcC
Confidence 56799999999999988864321 11 3799999999999999999999854221 11 111122111110
Q ss_pred hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEe
Q 002623 723 AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (899)
Q Consensus 723 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 798 (899)
...-+.+......|..+.+.+.+.... +.+.|++|||+|.++.+.+|+|+..||+ ...+++||++
T Consensus 85 h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-----------pp~~t~FIL~ 153 (535)
T PRK08451 85 HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-----------PPSYVKFILA 153 (535)
T ss_pred CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------cCCceEEEEE
Confidence 000000111111122222222222221 3467999999999999999999999997 3457888888
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
|+. ...+.+++++|| .++.|.+++.+++...+...+.+.+
T Consensus 154 ttd------------------------------~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG 193 (535)
T PRK08451 154 TTD------------------------------PLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEG 193 (535)
T ss_pred ECC------------------------------hhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC
Confidence 876 456778999999 8999999999999998888877654
No 217
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.53 E-value=1.6e-13 Score=144.11 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=120.8
Q ss_pred CCCCCc-CchH-HHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccc
Q 002623 253 KLDPVI-GRDD-EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330 (899)
Q Consensus 253 ~l~~ii-G~~~-~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g 330 (899)
+|++++ |... .+..+.+........+++|+||||||||+|++++++.+... +..+..+++.....
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh------
Confidence 455555 5333 33333333334455689999999999999999999987432 45566665544221
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccC
Q 002623 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 410 (899)
Q Consensus 331 ~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf 410 (899)
...++++..... -+|+|||+|.+.+... .....++++....++|+..+|+|++.++. ......|.|++||
T Consensus 87 ----~~~~~~~~~~~~---dlliiDdi~~~~~~~~--~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L~SRl 156 (235)
T PRK08084 87 ----FVPEVLEGMEQL---SLVCIDNIECIAGDEL--WEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDLASRL 156 (235)
T ss_pred ----hhHHHHHHhhhC---CEEEEeChhhhcCCHH--HHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHHHHHH
Confidence 112223333222 3899999999864321 22446677888888888777777775542 2223579999999
Q ss_pred ---ceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 411 ---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 411 ---~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
..+.+.+|+.+++.++++..+.. .++.++++++++++..+.+
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~ 201 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDR 201 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcC
Confidence 57899999999999998775554 5899999999999998875
No 218
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.1e-14 Score=163.73 Aligned_cols=170 Identities=20% Similarity=0.327 Sum_probs=115.9
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCce--EEeccccch---hhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL--VRIDMSEYM---EKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~--~~i~~~~~~---~~~ 722 (899)
+++++||+.+++.+..++...+. ++ .+||+||+|+|||++|+.+|+.+...+..- ..-.|.... ...
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl----~h----A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKL----TH----AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----Cc----eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCC
Confidence 56799999999999888753221 11 499999999999999999999985422110 111121110 000
Q ss_pred --hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 723 --AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 723 --~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
++..+-+ .+..|..+.+.+...+.. .++.|++|||+|.++.+.++.|+..||+ ...+++||
T Consensus 87 h~DiieIda--as~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------Pp~~tvfI 153 (605)
T PRK05896 87 SVDIVELDA--ASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------PPKHVVFI 153 (605)
T ss_pred CCceEEecc--ccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------CCCcEEEE
Confidence 0000101 112333333334444333 3467999999999999999999999997 33468888
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
++|+. ...+.+.+++|| .++.|.+++.+++...+...+.+.+
T Consensus 154 L~Tt~------------------------------~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 154 FATTE------------------------------FQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred EECCC------------------------------hHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC
Confidence 88875 456778899999 7999999999999998888877543
No 219
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.52 E-value=4.4e-14 Score=136.12 Aligned_cols=131 Identities=26% Similarity=0.491 Sum_probs=89.1
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||++|+.+|+.+ +.+++.+.|+...+..++...+-...+...+.. +.+..+++ .+++++||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE--CCCTTHH--EEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeeeeccccccccc-cccccccc--ceeEEEECCc
Confidence 48999999999999999999999 889999999887555433221111122222222 33333333 4579999999
Q ss_pred CccChHHHHHHHHhhcCCeeecCC-CceeeeC-------CEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHH
Q 002623 761 EKAHSDVFNVFLQILDDGRVTDSQ-GRTVSFT-------NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 832 (899)
Q Consensus 761 d~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~~-------~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (899)
+++++++++.|+.+++++++.... +...... +++||+|+|+.. .. .
T Consensus 75 n~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---~~-----------------------~ 128 (139)
T PF07728_consen 75 NRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---KG-----------------------R 128 (139)
T ss_dssp GG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------------------------T
T ss_pred ccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---CC-----------------------c
Confidence 999999999999999999877544 3333333 399999999943 00 4
Q ss_pred hcCChHHHhcc
Q 002623 833 SIFRPEFMNRV 843 (899)
Q Consensus 833 ~~~~p~ll~R~ 843 (899)
..++++|++||
T Consensus 129 ~~l~~al~~Rf 139 (139)
T PF07728_consen 129 KELSPALLDRF 139 (139)
T ss_dssp TTTCHHHHTT-
T ss_pred CcCCHHHHhhC
Confidence 68899999997
No 220
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.52 E-value=1.9e-13 Score=149.59 Aligned_cols=188 Identities=27% Similarity=0.407 Sum_probs=136.6
Q ss_pred CcCchHHHHHHHHHhhcC--------------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc
Q 002623 257 VIGRDDEIRRCIQILSRR--------------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~~--------------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 322 (899)
+|||++..+.+...+..+ .+.|+||+||||||||++|++||..+ +.+++.+|++.+
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l----------~~~fi~vdat~~ 83 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKF 83 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh----------CCeEEEeeccee
Confidence 899999888887665432 24799999999999999999999998 899999998776
Q ss_pred cccccccc-hHHHHHHHHHHHH----------------------------------------------------------
Q 002623 323 IAGAKYRG-EFEDRLKAVLKEV---------------------------------------------------------- 343 (899)
Q Consensus 323 ~~~~~~~g-~~~~~l~~l~~~~---------------------------------------------------------- 343 (899)
... .|.| +.+..++.++..+
T Consensus 84 ~e~-g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~ 162 (441)
T TIGR00390 84 TEV-GYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLRE 162 (441)
T ss_pred ecC-CcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhc
Confidence 532 1455 3444444443332
Q ss_pred -------------------------------------------------------------------------------H
Q 002623 344 -------------------------------------------------------------------------------T 344 (899)
Q Consensus 344 -------------------------------------------------------------------------------~ 344 (899)
.
T Consensus 163 g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~ 242 (441)
T TIGR00390 163 GELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAI 242 (441)
T ss_pred CCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 0
Q ss_pred h-hCCCeEEEEccchhhccCCCCC----chHHHHHHHhhhhcC------------CCeEEEEecChhHHHhhhccCHHHH
Q 002623 345 E-SEGQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALE 407 (899)
Q Consensus 345 ~-~~~~~IL~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~~I~at~~~~~~~~~~~d~al~ 407 (899)
. ....+|+||||||.+...+.+. ....+|+.|+++++. .++.+|++........ -++-|.|.
T Consensus 243 ~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp-~DlIPEl~ 321 (441)
T TIGR00390 243 DAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKP-SDLIPELQ 321 (441)
T ss_pred HHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCCh-hhccHHHh
Confidence 1 1245799999999999654221 334578889999874 4788888865432111 14569999
Q ss_pred ccCc-eEEecCCCHHHHHHHH----HHHHHHHhhh---hC--CCCCHHHHHHHHHhccc
Q 002623 408 RRFQ-QVYVDQPNVEDTISIL----RGLRERYELH---HG--VRISDSALVEAAILSDR 456 (899)
Q Consensus 408 ~Rf~-~i~~~~ps~ee~~~Il----~~~~~~~~~~---~~--~~i~~~~l~~~~~ls~~ 456 (899)
-||. .+.+.+++.++...|| ..+.++|... .+ +.|+++++..+++.+..
T Consensus 322 GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 322 GRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred CccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 9998 7899999999999999 4566666633 33 46899999999998753
No 221
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.1e-14 Score=165.52 Aligned_cols=172 Identities=20% Similarity=0.319 Sum_probs=118.4
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC-----ceE-----Eecccc
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-----ALV-----RIDMSE 717 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-----~~~-----~i~~~~ 717 (899)
+++|+||+.+++.|.+++...+. ++ .+||+||+|+|||++|+++|+.++.... +.+ .-.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri----~h----a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~ 94 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRI----AQ----AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQA 94 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----Cc----eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHH
Confidence 56899999999999998864321 11 4999999999999999999999853211 100 011211
Q ss_pred chhhhhhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCE
Q 002623 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (899)
Q Consensus 718 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 793 (899)
+.......-+.-.+.+..|..+.+.+.+.+.. ..+.|+||||+|.++...+|.|+..||+ ...++
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-----------Pp~~~ 163 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHV 163 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-----------CCCCe
Confidence 11111000000011223444444455555543 3478999999999999999999999997 34568
Q ss_pred EEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 794 iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+||++|+. ...+.+.+++|| ..+.|.+++.+++...+...+.+.+
T Consensus 164 ~fIl~tte------------------------------~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 164 KFIFATTE------------------------------IRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred EEEEEeCC------------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 88888765 344667799999 8999999999999999988887554
No 222
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.52 E-value=1.6e-13 Score=150.24 Aligned_cols=188 Identities=27% Similarity=0.409 Sum_probs=137.8
Q ss_pred CcCchHHHHHHHHHhhcC--------------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc
Q 002623 257 VIGRDDEIRRCIQILSRR--------------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~~--------------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 322 (899)
++||++.++.+...+..+ .+.|+||+||||||||++|+.||+.+ +.+++.+|++.+
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l----------~~~fi~vD~t~f 86 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKF 86 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh----------CChheeecchhh
Confidence 999999888888766331 15799999999999999999999998 889999998877
Q ss_pred cccccccc-hHHHHHHHHHHHH----------------------------------------------------------
Q 002623 323 IAGAKYRG-EFEDRLKAVLKEV---------------------------------------------------------- 343 (899)
Q Consensus 323 ~~~~~~~g-~~~~~l~~l~~~~---------------------------------------------------------- 343 (899)
... .|.| +.+..++.++..+
T Consensus 87 ~e~-GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~ 165 (443)
T PRK05201 87 TEV-GYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLRE 165 (443)
T ss_pred ccC-CcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHc
Confidence 642 2555 3344444444333
Q ss_pred ------------------------------------------------------------------------------Hh
Q 002623 344 ------------------------------------------------------------------------------TE 345 (899)
Q Consensus 344 ------------------------------------------------------------------------------~~ 345 (899)
..
T Consensus 166 g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~ 245 (443)
T PRK05201 166 GELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIE 245 (443)
T ss_pred CCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 11
Q ss_pred -hCCCeEEEEccchhhccCCCCC----chHHHHHHHhhhhcC------------CCeEEEEecChhHHHhhhccCHHHHc
Q 002623 346 -SEGQIILFIDEIHTVVGAGATN----GAMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALER 408 (899)
Q Consensus 346 -~~~~~IL~iDEi~~l~~~~~~~----~~~~~~~~L~~~l~~------------~~v~~I~at~~~~~~~~~~~d~al~~ 408 (899)
....+|+||||||.+....++. ....+|+.|+++++. .++.+|++.-....+ --++-|.|.-
T Consensus 246 ~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~k-p~DlIPEl~G 324 (443)
T PRK05201 246 RVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSK-PSDLIPELQG 324 (443)
T ss_pred HHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhC
Confidence 1135699999999998654321 234578889999874 478888886533211 1145699999
Q ss_pred cCc-eEEecCCCHHHHHHHH----HHHHHHHhhhh-----CCCCCHHHHHHHHHhccc
Q 002623 409 RFQ-QVYVDQPNVEDTISIL----RGLRERYELHH-----GVRISDSALVEAAILSDR 456 (899)
Q Consensus 409 Rf~-~i~~~~ps~ee~~~Il----~~~~~~~~~~~-----~~~i~~~~l~~~~~ls~~ 456 (899)
||. .+.+.+++.++...|| ..+.++|.... .+.++++++..+++.+..
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 998 7899999999999999 45777766432 347999999999999864
No 223
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=5.6e-14 Score=161.87 Aligned_cols=171 Identities=23% Similarity=0.321 Sum_probs=115.0
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC-ceE---Eeccccchhh-h
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-ALV---RIDMSEYMEK-H 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-~~~---~i~~~~~~~~-~ 722 (899)
+++|+||+.++..|...+...+. |+ .+||+||||||||++|+++++.+...+. +.. .-.|..+... +
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l----~h----a~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h 84 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRL----GH----AYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAH 84 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCC----Ce----EEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCC
Confidence 56799999999999888764321 11 2699999999999999999999853211 100 0111111110 0
Q ss_pred hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEe
Q 002623 723 AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (899)
Q Consensus 723 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 798 (899)
.....++. .+..+....+.+.+.+.. ..+.||||||+|.+....++.|+..|++ ...+++||++
T Consensus 85 ~dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~~t~~Il~ 152 (504)
T PRK14963 85 PDVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPEHVIFILA 152 (504)
T ss_pred CceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCCCEEEEEE
Confidence 00000111 111222222333333332 3467999999999999999999999987 2346788888
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+|. ...+.+.+.+|| ..+.|.+++.+++...+...+.+.+
T Consensus 153 t~~------------------------------~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 153 TTE------------------------------PEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred cCC------------------------------hhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 876 456788899999 7999999999999999998887654
No 224
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=5e-14 Score=160.90 Aligned_cols=170 Identities=21% Similarity=0.327 Sum_probs=117.0
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC-----ce-EEeccccchhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-----AL-VRIDMSEYMEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-----~~-~~i~~~~~~~~ 721 (899)
+++|+||+.++..+...+...+. + ..+||+||||+|||++|+.+|+.++.... ++ ...+|..+...
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i----~----ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~ 87 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRA----A----HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSG 87 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----c----eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcC
Confidence 57899999999999888864221 1 14899999999999999999999954311 11 11222222211
Q ss_pred hh--hhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 HA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 ~~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
.. +..+-|. ...|.++.+.+.+.+. ...+.|+||||+|.+....++.|++.||+ ...+++|
T Consensus 88 ~~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~~~~~~ 154 (451)
T PRK06305 88 TSLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PPQHVKF 154 (451)
T ss_pred CCCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CCCCceE
Confidence 11 1111111 1223333333333333 24678999999999999999999999997 2346788
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
|++||. ...+.+++.+|| ..+.|.+++.+++...+...+.+.+
T Consensus 155 Il~t~~------------------------------~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 155 FLATTE------------------------------IHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred EEEeCC------------------------------hHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 888875 456778899999 8999999999999998888776643
No 225
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.52 E-value=1.6e-13 Score=151.68 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=130.0
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+++++||+.+++.+...+.. +. .|. .++|+||||+|||++|+++++.+ +.+++.+++++. ....+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~---~~----~~~-~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~~-~~~~i~~- 86 (316)
T PHA02544 20 IDECILPAADKETFKSIVKK---GR----IPN-MLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSDC-RIDFVRN- 86 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhc---CC----CCe-EEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCcc-cHHHHHH-
Confidence 45789999999988888752 11 111 36669999999999999999987 567888888762 1111110
Q ss_pred cCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCcc-ChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC
Q 002623 728 IGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (899)
Q Consensus 728 ~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~ 802 (899)
.+..... ...++||+|||+|.+ ..+.++.|..+++. ...++.||+|||.
T Consensus 87 --------------~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-----------~~~~~~~Ilt~n~- 140 (316)
T PHA02544 87 --------------RLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-----------YSKNCSFIITANN- 140 (316)
T ss_pred --------------HHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-----------cCCCceEEEEcCC-
Confidence 0111111 134679999999999 67788888888886 2246789999987
Q ss_pred hhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHH
Q 002623 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYE 882 (899)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~ 882 (899)
...+.|++.+|| ..+.|++++.++...++...+.++..........++++
T Consensus 141 -----------------------------~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~ 190 (316)
T PHA02544 141 -----------------------------KNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK 190 (316)
T ss_pred -----------------------------hhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 456788999999 78999999999999898888877765555566788889
Q ss_pred HHHHhhccccc
Q 002623 883 MLVKFCYLAFT 893 (899)
Q Consensus 883 ~l~~~~~~~~~ 893 (899)
++..++...|.
T Consensus 191 al~~l~~~~~~ 201 (316)
T PHA02544 191 VLAALVKKNFP 201 (316)
T ss_pred HHHHHHHhcCC
Confidence 98888877663
No 226
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.51 E-value=1.3e-13 Score=154.09 Aligned_cols=181 Identities=18% Similarity=0.259 Sum_probs=125.6
Q ss_pred HHHHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccc
Q 002623 637 REKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMS 716 (899)
Q Consensus 637 ~~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~ 716 (899)
...+..+.+.+.+.++|++++++.+..++.. + +++||+||||||||++|++|++.+...+ +|..+.+.
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aala---g--------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ 75 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALS---G--------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR 75 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHcc---C--------CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeee
Confidence 3456677888999999999999988777642 1 2599999999999999999999885433 66655554
Q ss_pred cchhhhhhhhhcCCCCCCcccccccchh----HHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCC
Q 002623 717 EYMEKHAVSRLIGAPPGYVGYEEGGQLT----EVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (899)
Q Consensus 717 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~----~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 792 (899)
-.. ...++|...-+..... +.+. +.+..+ .+||+|||+++++.+|+.|+++|+++.++. .|.....+.
T Consensus 76 ftt----p~DLfG~l~i~~~~~~-g~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~ 147 (498)
T PRK13531 76 FST----PEEVFGPLSIQALKDE-GRYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPM 147 (498)
T ss_pred ecC----cHHhcCcHHHhhhhhc-CchhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCC
Confidence 211 2355664210100000 1111 112122 299999999999999999999999998886 466666666
Q ss_pred EEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC-HHHHHHHHHHH
Q 002623 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQ 864 (899)
Q Consensus 793 ~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~-~e~i~~I~~~~ 864 (899)
-+|+++||.-++ .+.|.+++++||-..+.+++++ .++..+|+...
T Consensus 148 rfiv~ATN~LPE---------------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 148 RLLVTASNELPE---------------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cEEEEECCCCcc---------------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 666777786221 3567889999996689999997 46667777653
No 227
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4e-14 Score=162.55 Aligned_cols=183 Identities=21% Similarity=0.351 Sum_probs=121.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC----CceE-Eeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE----EALV-RIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~~-~i~~~~~~~~~ 722 (899)
+.+++||+.++..|..++...+. + ..+||+||+|+|||++|+.+|+.++..+ .|+- ..+|..+....
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i----~----hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRV----S----HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC
Confidence 56799999999999888864221 1 1389999999999999999999985311 1111 11222221110
Q ss_pred --hhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 723 --AVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 723 --~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
++..+-+ ....|....+.+.+.+.. ..+.|++|||+|.++...++.|+..|++ ...+++||
T Consensus 87 ~~d~~eida--as~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp~~~v~I 153 (486)
T PRK14953 87 FPDLIEIDA--ASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PPPRTIFI 153 (486)
T ss_pred CCcEEEEeC--ccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEE
Confidence 0001111 112233333444444443 3457999999999999999999999997 23467777
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCC
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSP 876 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~ 876 (899)
++|+. ...+.+++.+|| ..+.|+|++.+++..++...+++.+
T Consensus 154 l~tt~------------------------------~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg------- 195 (486)
T PRK14953 154 LCTTE------------------------------YDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK------- 195 (486)
T ss_pred EEECC------------------------------HHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-------
Confidence 77764 344567889999 7899999999999999998887665
Q ss_pred CccCHHHHHHhhc
Q 002623 877 WHFNYEMLVKFCY 889 (899)
Q Consensus 877 ~~~~~~~l~~~~~ 889 (899)
..++++++..++.
T Consensus 196 i~id~~al~~La~ 208 (486)
T PRK14953 196 IEYEEKALDLLAQ 208 (486)
T ss_pred CCCCHHHHHHHHH
Confidence 3345555544443
No 228
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-13 Score=153.73 Aligned_cols=178 Identities=22% Similarity=0.366 Sum_probs=130.9
Q ss_pred CCcCchHHHHHHHHHhhcCC------CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccc-----c
Q 002623 256 PVIGRDDEIRRCIQILSRRT------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-----A 324 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~~~------~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~-----~ 324 (899)
+=.|.++.-+++++.+.-+. .+-++|+||||||||++++.||+.+ |.+|+++.++.+. .
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhc
Confidence 46788888999999874332 2345899999999999999999999 9999999887763 2
Q ss_pred ccc--ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc-----------------CCCe
Q 002623 325 GAK--YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG-----------------RGEL 385 (899)
Q Consensus 325 ~~~--~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~-----------------~~~v 385 (899)
|.+ |+|....++-+.+..+.-. +-+++|||||.+-..-+ |. -...|+.+|+ -.+|
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~--NPliLiDEvDKlG~g~q--GD--PasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTE--NPLILIDEVDKLGSGHQ--GD--PASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCC--CceEEeehhhhhCCCCC--CC--hHHHHHHhcChhhccchhhhccccccchhhe
Confidence 222 7777777777676666533 33788999999973222 22 2234555553 1388
Q ss_pred EEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHH-HHhhhh-----CCCCCHHHHHHHHHhc
Q 002623 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRE-RYELHH-----GVRISDSALVEAAILS 454 (899)
Q Consensus 386 ~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~-~~~~~~-----~~~i~~~~l~~~~~ls 454 (899)
.+|||.|..+ .++++|++|+..|.++-+..+|..+|.+.++- +....+ .+.+++.++..+++.-
T Consensus 556 LFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 556 LFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred EEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 9999999987 79999999999999999999999999976553 322233 4678888776665543
No 229
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.51 E-value=1.5e-13 Score=156.75 Aligned_cols=167 Identities=18% Similarity=0.329 Sum_probs=118.0
Q ss_pred ccceeccchHHHH---HHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhh
Q 002623 648 HKRVVGQDPAVKS---VAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAV 724 (899)
Q Consensus 648 ~~~i~Gq~~~~~~---l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~ 724 (899)
.++++||++.+.. +...+... . ..+++|+||||||||++|++|++.+ +..|+.+++..... ..+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~----~-----~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~-~~i 77 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG----R-----LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGV-KDL 77 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC----C-----CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccH-HHH
Confidence 3568999988765 66665421 1 1269999999999999999999988 67788887754311 111
Q ss_pred hhhcCCCCCCcccccccchhHHH----hhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecC
Q 002623 725 SRLIGAPPGYVGYEEGGQLTEVV----RRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (899)
Q Consensus 725 ~~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN 800 (899)
. .+.+.+ ....+.||||||+|.+....++.|+..+++| .+++|++|+
T Consensus 78 r----------------~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~-------------~iilI~att 128 (413)
T PRK13342 78 R----------------EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG-------------TITLIGATT 128 (413)
T ss_pred H----------------HHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcC-------------cEEEEEeCC
Confidence 1 111111 1225679999999999999999999999874 355666654
Q ss_pred CChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccC
Q 002623 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFN 880 (899)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~ 880 (899)
..+ ...+.+++++|| .++.|++++.+++..++.+.+......+ ..++
T Consensus 129 ~n~----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~----i~i~ 175 (413)
T PRK13342 129 ENP----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGL----VELD 175 (413)
T ss_pred CCh----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCC----CCCC
Confidence 311 345778999999 8999999999999999999887754211 3566
Q ss_pred HHHHHHhhc
Q 002623 881 YEMLVKFCY 889 (899)
Q Consensus 881 ~~~l~~~~~ 889 (899)
++++..+..
T Consensus 176 ~~al~~l~~ 184 (413)
T PRK13342 176 DEALDALAR 184 (413)
T ss_pred HHHHHHHHH
Confidence 766544443
No 230
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=1.7e-13 Score=146.78 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=113.3
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCC--cc----cccccchhHHHhhCCCeE
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGY--VG----YEEGGQLTEVVRRRPYAV 754 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~--~g----~~~~~~l~~~~~~~~~~v 754 (899)
++||.||||||||++++.+|+.+ +.++++++|+..... ..++|...-. .| .-..+.+..+.+ .+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCCceeeccCCcceeEEecCcchhHHh--CCeE
Confidence 59999999999999999999999 899999999987443 3456653211 01 111234444443 3468
Q ss_pred EEEeCCCccChHHHHHHHHhhcC-CeeecCC-Ccee-eeCCEEEEEecCCChhh-hhccCCCCCCCcchHHHHHHHHHHH
Q 002623 755 ILFDEIEKAHSDVFNVFLQILDD-GRVTDSQ-GRTV-SFTNTVIIMTSNVGSQY-ILNMDDETFPKETAYETIKQRVMDA 830 (899)
Q Consensus 755 l~lDEid~l~~~~~~~Ll~~le~-g~~~~~~-g~~~-~~~~~iiI~ttN~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (899)
|++||++.+++++++.|+.+||. |.++... ++.+ .++++++|+|+|+-... -. |....
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~----G~y~G-------------- 199 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTT----GLYHG-------------- 199 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCC----cceee--------------
Confidence 99999999999999999999994 5776644 6666 44689999999982100 00 00000
Q ss_pred HHhcCChHHHhccceEEecCCCCHHHHHHHHHHH
Q 002623 831 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 831 ~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
...++.++++||-.++.+.+++.++-.+|+...
T Consensus 200 -t~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 200 -TQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred -eecCCHHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 356789999999656789999988878887654
No 231
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=151.47 Aligned_cols=174 Identities=30% Similarity=0.412 Sum_probs=122.4
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
.......+...++|+++++..+..++.. +. ++||.||||||||++|+.+|+.+ +.+|++++|....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~---~~--------~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLA---GG--------HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHc---CC--------CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCC
Confidence 3344555667799988888777766642 21 59999999999999999999999 7899999999775
Q ss_pred hhhhhhhhcCCC--------CCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeee-
Q 002623 720 EKHAVSRLIGAP--------PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSF- 790 (899)
Q Consensus 720 ~~~~~~~l~g~~--------~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~- 790 (899)
...+ ++|.. .+..-+. .+.++..++ +|+++|||+++++.+|+.|+++|+++.++...-.....
T Consensus 81 ~p~d---~~G~~~~~~~~~~~~~~~~~-~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~ 152 (329)
T COG0714 81 LPSD---LLGTYAYAALLLEPGEFRFV-PGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP 152 (329)
T ss_pred CHHH---hcCchhHhhhhccCCeEEEe-cCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence 5433 33331 1111111 233333333 69999999999999999999999998888765221333
Q ss_pred CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHH
Q 002623 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSI 860 (899)
Q Consensus 791 ~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I 860 (899)
..+++|+|+|++... . ...++.++++||...+.++++..++...+
T Consensus 153 ~~f~viaT~Np~e~~----------g---------------~~~l~eA~ldRf~~~~~v~yp~~~~e~~~ 197 (329)
T COG0714 153 PPFIVIATQNPGEYE----------G---------------TYPLPEALLDRFLLRIYVDYPDSEEEERI 197 (329)
T ss_pred CCCEEEEccCccccC----------C---------------CcCCCHHHHhhEEEEEecCCCCchHHHHH
Confidence 478888888973211 1 35678999999977888888844433333
No 232
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=2.9e-13 Score=151.27 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=121.6
Q ss_pred CCCCCcCchHHHHHHHHHhhcCC----------CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------c
Q 002623 253 KLDPVIGRDDEIRRCIQILSRRT----------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------L 309 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~~~----------~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------l 309 (899)
.|++|+|++..++.+...+.... +..+||+||||+|||++|+.+|+.+.+...... .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 47789999999888888876643 455899999999999999999999876431100 0
Q ss_pred CCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC---C
Q 002623 310 MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---G 383 (899)
Q Consensus 310 ~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~ 383 (899)
....++.+.... . . -..+.++.+++.+... ++..|+||||+|.+. ...+|.|+..|++ +
T Consensus 83 ~hpD~~~i~~~~----~-~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------~~aanaLLk~LEep~~~ 147 (394)
T PRK07940 83 THPDVRVVAPEG----L-S--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------ERAANALLKAVEEPPPR 147 (394)
T ss_pred CCCCEEEecccc----c-c--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------HHHHHHHHHHhhcCCCC
Confidence 011122332211 1 0 1123466677666542 345699999999997 5677888889986 4
Q ss_pred CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 384 ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 384 ~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
.+.|++|++ .. .+.|.+++||+.+.|++|+.++..+.+.. . . .++++....++.++.+.
T Consensus 148 ~~fIL~a~~-~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~----~--~~~~~~a~~la~~s~G~ 206 (394)
T PRK07940 148 TVWLLCAPS-PE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R----D--GVDPETARRAARASQGH 206 (394)
T ss_pred CeEEEEECC-hH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h----c--CCCHHHHHHHHHHcCCC
Confidence 555555555 33 67899999999999999999987776651 1 1 35677778888888764
No 233
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=4.4e-14 Score=149.20 Aligned_cols=191 Identities=19% Similarity=0.303 Sum_probs=137.1
Q ss_pred ccceeccchHHHHHHHHHHHH--------HcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
|.+|.|.+..++++.+.+..- +.++- +|...+||+||||||||.+|+++|+.. +.+|+.+.++.+.
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll---~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt 164 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLL---RPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLT 164 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccc---cCCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccc
Confidence 467888888888888877321 11111 222359999999999999999999999 8999999999986
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-------hH----HHHHHHHhhcCCeeecCCCcee
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-------SD----VFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-------~~----~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
+ ++||....++ ..++....+-.++++||||+|.+- .+ .-+.|+...| |-.++
T Consensus 165 ~-----KWfgE~eKlv-----~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~------ 227 (386)
T KOG0737|consen 165 S-----KWFGEAQKLV-----KAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSK------ 227 (386)
T ss_pred h-----hhHHHHHHHH-----HHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCC------
Confidence 5 4455443332 234455556678999999999864 11 2344444443 43332
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
+...++|+++||. ...++.++++|+...++++-|+.++..+|+.-.|+..
T Consensus 228 ~~~rVlVlgATNR------------------------------P~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e 277 (386)
T KOG0737|consen 228 DSERVLVLGATNR------------------------------PFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE 277 (386)
T ss_pred CCceEEEEeCCCC------------------------------CccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhccc
Confidence 2235889999999 4566788999999999999999999999999999876
Q ss_pred Hh-------hcccCCCccCHHHHHHhhccc
Q 002623 869 KV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 869 ~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
.. ++.....+++...|..+|..+
T Consensus 278 ~~e~~vD~~~iA~~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 278 KLEDDVDLDEIAQMTEGYSGSDLKELCRLA 307 (386)
T ss_pred ccCcccCHHHHHHhcCCCcHHHHHHHHHHH
Confidence 65 222334688888999999754
No 234
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=8e-13 Score=159.81 Aligned_cols=184 Identities=18% Similarity=0.266 Sum_probs=129.4
Q ss_pred CCcCchHHHHHHHHHhhc------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccc----
Q 002623 256 PVIGRDDEIRRCIQILSR------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG---- 325 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~---- 325 (899)
+.+|.++..+++++.+.. .....++|+||||||||++++.+++.+ +.+++.++++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhc
Confidence 389999988888876642 233568999999999999999999998 788888887764221
Q ss_pred ---ccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-----------------CCe
Q 002623 326 ---AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-----------------GEL 385 (899)
Q Consensus 326 ---~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~v 385 (899)
..|.|....++...+..+.. .+.|+||||+|.+.+..+ .+..+.|.++++. +++
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~--~~~villDEidk~~~~~~----g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGV--KNPLFLLDEIDKMSSDMR----GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCC--CCCEEEEEChhhcccccC----CCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 12444444444333333221 234889999999975432 1344567777653 578
Q ss_pred EEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHH-HHhhh-----hCCCCCHHHHHHHHHhcccccC
Q 002623 386 RCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRE-RYELH-----HGVRISDSALVEAAILSDRYIS 459 (899)
Q Consensus 386 ~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~-~~~~~-----~~~~i~~~~l~~~~~ls~~~i~ 459 (899)
.+|+|+|.. .++|+|++||..|.+..++.++..+|++..+. +.... ..+.++++++..+++...+-..
T Consensus 467 ~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 467 MFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred EEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 899988654 58999999999999999999999999977663 22222 2467999999998864333333
Q ss_pred CC
Q 002623 460 GR 461 (899)
Q Consensus 460 ~~ 461 (899)
.|
T Consensus 541 aR 542 (784)
T PRK10787 541 VR 542 (784)
T ss_pred Cc
Confidence 34
No 235
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.49 E-value=1.1e-12 Score=152.24 Aligned_cols=211 Identities=16% Similarity=0.129 Sum_probs=140.2
Q ss_pred CCCCcCchHHHHHHHHHhhc----CCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccc---
Q 002623 254 LDPVIGRDDEIRRCIQILSR----RTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG--- 325 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~----~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~--- 325 (899)
.+.++||+++++.+...|.. ..++++ +|+|+||||||++++.+.+.+....--..+....++.+||..+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45689999999999887743 344555 5999999999999999998885311001122467899998543211
Q ss_pred -----------ccccc-hHHHHHHHHHHHHHhh-CCCeEEEEccchhhccCCCCCchHHHHHHHhhh-hcCCCeEEEEec
Q 002623 326 -----------AKYRG-EFEDRLKAVLKEVTES-EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM-LGRGELRCIGAT 391 (899)
Q Consensus 326 -----------~~~~g-~~~~~l~~l~~~~~~~-~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~-l~~~~v~~I~at 391 (899)
....| .....+..+|..+... ....||+|||||.|.... ...+.+++.-. ...+.+.+||++
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HHHHHHHHHHhhccCCeEEEEEec
Confidence 01112 2233455666655332 235699999999998542 11223333211 135579999999
Q ss_pred ChhHHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHH
Q 002623 392 TLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAID 469 (899)
Q Consensus 392 ~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~ 469 (899)
|...+.. .++|.+++||. .|.|++++.+++.+||+..++.. ...++++++..++.++...-.+ -.+|++
T Consensus 910 NdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGD---ARKALD 980 (1164)
T PTZ00112 910 NTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGD---IRKALQ 980 (1164)
T ss_pred Cchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCH---HHHHHH
Confidence 8765433 45789999986 48999999999999998887752 3458999999998865432221 237888
Q ss_pred HHHHHHHh
Q 002623 470 LVDEAAAK 477 (899)
Q Consensus 470 lld~a~~~ 477 (899)
+|..|+..
T Consensus 981 ILRrAgEi 988 (1164)
T PTZ00112 981 ICRKAFEN 988 (1164)
T ss_pred HHHHHHhh
Confidence 88887753
No 236
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.49 E-value=2.8e-13 Score=161.68 Aligned_cols=176 Identities=15% Similarity=0.252 Sum_probs=123.6
Q ss_pred cceeccchHHH---HHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhh
Q 002623 649 KRVVGQDPAVK---SVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 649 ~~i~Gq~~~~~---~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~ 725 (899)
++++||+..+. .+...+.. . ...+++|+||||||||++|+++++.+ +..|+.+++..... ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~----~-----~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i-~dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA----D-----RVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGV-KDLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc----C-----CCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhh-HHHH
Confidence 46889998875 34444331 1 11269999999999999999999987 56777777753211 0110
Q ss_pred hhcCCCCCCcccccccchhHHHh-hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChh
Q 002623 726 RLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (899)
Q Consensus 726 ~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~ 804 (899)
..+ ......+. ...+.+|||||||.++...|+.|+..+++| .+++|++|+..+
T Consensus 95 ~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g-------------~IiLI~aTTenp- 148 (725)
T PRK13341 95 AEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENG-------------TITLIGATTENP- 148 (725)
T ss_pred HHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCc-------------eEEEEEecCCCh-
Confidence 000 00001111 123569999999999999999999999874 356666654411
Q ss_pred hhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHH
Q 002623 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEML 884 (899)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l 884 (899)
...+.+++++|+ .++.|+||+.+++..++++.+.+....++.....++++++
T Consensus 149 ---------------------------~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL 200 (725)
T PRK13341 149 ---------------------------YFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAE 200 (725)
T ss_pred ---------------------------HhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHH
Confidence 234568899998 7899999999999999999999877666666778899987
Q ss_pred HHhhccc
Q 002623 885 VKFCYLA 891 (899)
Q Consensus 885 ~~~~~~~ 891 (899)
..++..+
T Consensus 201 ~~La~~s 207 (725)
T PRK13341 201 KHLVDVA 207 (725)
T ss_pred HHHHHhC
Confidence 7666554
No 237
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.49 E-value=1.1e-13 Score=171.10 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=120.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhh----hhh-hcCC------------------------C
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA----VSR-LIGA------------------------P 731 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~----~~~-l~g~------------------------~ 731 (899)
.+||+||||||||.+|+++|..+ +.||+.+.++++.+... ... .+|. .
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 49999999999999999999998 89999999999865320 000 0110 0
Q ss_pred CCCccccc----ccchhHHHhhCCCeEEEEeCCCccChH-----HHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC
Q 002623 732 PGYVGYEE----GGQLTEVVRRRPYAVILFDEIEKAHSD-----VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (899)
Q Consensus 732 ~~~~g~~~----~~~l~~~~~~~~~~vl~lDEid~l~~~-----~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~ 802 (899)
.++.+..+ .+.+++.+++..+|||+|||||.+... .++.|+..|+...-. ....+++||+|||.
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATNR- 1781 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTHI- 1781 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCCC-
Confidence 11122221 134677888888999999999998754 367888888742100 12247899999999
Q ss_pred hhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHH--HH--------Hh
Q 002623 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS--FS--------KV 870 (899)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~--~~--------~~ 870 (899)
.+.++|||+ +|||..|.++.|+..+.++++...+. .+ -.
T Consensus 1782 -----------------------------PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~ 1832 (2281)
T CHL00206 1782 -----------------------------PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTN 1832 (2281)
T ss_pred -----------------------------cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHH
Confidence 788999999 59999999998887666666553221 11 12
Q ss_pred hcccCCCccCHHHHHHhhcccc
Q 002623 871 SWIYSPWHFNYEMLVKFCYLAF 892 (899)
Q Consensus 871 ~~~~~~~~~~~~~l~~~~~~~~ 892 (899)
.+.....+++.+.|+.+|..+-
T Consensus 1833 ~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1833 GFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred HHHHhCCCCCHHHHHHHHHHHH
Confidence 3344567889999999887653
No 238
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.48 E-value=3.2e-12 Score=129.38 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=152.2
Q ss_pred HHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcccc---------CCCeEE
Q 002623 245 LTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL---------MNRKLI 315 (899)
Q Consensus 245 l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l---------~~~~~~ 315 (899)
|.++++|..++.++++++.-..+........-.|.++|||+|+||-|.+.+|.+.++.-.++..- .+.+ +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk-l 81 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK-L 81 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce-E
Confidence 67789999999999988766666655555667899999999999999999999999875554321 1111 1
Q ss_pred EEE-ccc---c-cccccccch-HHHHHHHHHHHHHhh--------CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc
Q 002623 316 SLD-MGA---L-IAGAKYRGE-FEDRLKAVLKEVTES--------EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG 381 (899)
Q Consensus 316 ~l~-~~~---l-~~~~~~~g~-~~~~l~~l~~~~~~~--------~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~ 381 (899)
+++ +++ + ++++ ..|. -+--+.+++.++.+. ...-+++|-|+|.|. .|++..|++.|+
T Consensus 82 EistvsS~yHlEitPS-DaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------~dAQ~aLRRTME 152 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPS-DAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------RDAQHALRRTME 152 (351)
T ss_pred EEEEecccceEEeChh-hcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh--------HHHHHHHHHHHH
Confidence 111 010 0 1111 1221 122345566665532 224588999999998 899999999998
Q ss_pred --CCCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccC
Q 002623 382 --RGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYIS 459 (899)
Q Consensus 382 --~~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~ 459 (899)
.+.+++|..+|... .+-+++++||-.|.++.|+.+|+..++...+++ +++.++.+.+..+++-|.|-+
T Consensus 153 kYs~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL- 222 (351)
T KOG2035|consen 153 KYSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL- 222 (351)
T ss_pred HHhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccH-
Confidence 56899999998876 678999999999999999999999999999998 889999999999999997643
Q ss_pred CCCChhhHHHHHHHHH
Q 002623 460 GRFLPDKAIDLVDEAA 475 (899)
Q Consensus 460 ~~~~p~~a~~lld~a~ 475 (899)
.+|+-.+...+
T Consensus 223 -----RrAllmlE~~~ 233 (351)
T KOG2035|consen 223 -----RRALLMLEAVR 233 (351)
T ss_pred -----HHHHHHHHHHH
Confidence 25555555544
No 239
>PRK06893 DNA replication initiation factor; Validated
Probab=99.48 E-value=6.1e-13 Score=139.18 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=113.6
Q ss_pred cCCCCCCcCchHHH--HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccc
Q 002623 251 AGKLDPVIGRDDEI--RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 328 (899)
Q Consensus 251 ~~~l~~iiG~~~~i--~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~ 328 (899)
+.+|++++|+++.. ..+.+.......+.++|+||||||||+|++++++.+... +..+..+++....
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~----- 79 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ----- 79 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh-----
Confidence 44788888765421 112222222222335899999999999999999997542 3344444443211
Q ss_pred cchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeE-EEEecChhHHHhhhccCHHHH
Q 002623 329 RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELR-CIGATTLDEYRKYIEKDPALE 407 (899)
Q Consensus 329 ~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~-~I~at~~~~~~~~~~~d~al~ 407 (899)
....+++..+. ..-+|+|||++.+.+.... ...+.+++....+++... ++++++.+..- -...|.+.
T Consensus 80 -----~~~~~~~~~~~---~~dlLilDDi~~~~~~~~~--~~~l~~l~n~~~~~~~~illits~~~p~~l--~~~~~~L~ 147 (229)
T PRK06893 80 -----YFSPAVLENLE---QQDLVCLDDLQAVIGNEEW--ELAIFDLFNRIKEQGKTLLLISADCSPHAL--SIKLPDLA 147 (229)
T ss_pred -----hhhHHHHhhcc---cCCEEEEeChhhhcCChHH--HHHHHHHHHHHHHcCCcEEEEeCCCChHHc--cccchhHH
Confidence 01122333332 2349999999988643211 124555566665666544 44444444321 12348999
Q ss_pred ccCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 408 RRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 408 ~Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
+|+. .+.+++|+.+++.+|++..+.. .++.++++++.+++..+.+
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDR 195 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccC
Confidence 9986 6889999999999999887765 6899999999999998865
No 240
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-13 Score=156.62 Aligned_cols=170 Identities=19% Similarity=0.304 Sum_probs=112.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC---c-e---EEeccccc--
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE---A-L---VRIDMSEY-- 718 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~---~-~---~~i~~~~~-- 718 (899)
+++|+||+.+++.|...+...+. |+ .+||+||||||||++|+++|+.++.... + + ..-.|...
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~----~h----a~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRV----GH----GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCc----ce----eEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 56899999999999888764321 11 3999999999999999999999954210 0 0 00112211
Q ss_pred ----hhhhh--hhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCcee
Q 002623 719 ----MEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 719 ----~~~~~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
..... +..+-| .+..+.++.+.+.+.+. .+++.|+||||+|.++...++.|+..|++
T Consensus 87 c~~~~~~~~~n~~~~~~--~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe----------- 153 (397)
T PRK14955 87 CRDFDAGTSLNISEFDA--ASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE----------- 153 (397)
T ss_pred HHHHhcCCCCCeEeecc--cccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-----------
Confidence 00000 000101 01112222223333343 23467999999999999999999999997
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
..+.++||++++. ...+.+++.+|| .++.|.+++.+++...+...+.+.
T Consensus 154 p~~~t~~Il~t~~------------------------------~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~ 202 (397)
T PRK14955 154 PPPHAIFIFATTE------------------------------LHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAE 202 (397)
T ss_pred CCCCeEEEEEeCC------------------------------hHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHc
Confidence 3346777777754 345667889999 799999999999999888877654
Q ss_pred H
Q 002623 869 K 869 (899)
Q Consensus 869 ~ 869 (899)
+
T Consensus 203 g 203 (397)
T PRK14955 203 G 203 (397)
T ss_pred C
Confidence 3
No 241
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.3e-14 Score=144.20 Aligned_cols=117 Identities=17% Similarity=0.290 Sum_probs=85.5
Q ss_pred eEEEEeCCCccC------------hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchH
Q 002623 753 AVILFDEIEKAH------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 820 (899)
Q Consensus 753 ~vl~lDEid~l~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~ 820 (899)
||+||||||+.. ..+|..||.++|...+....| .+...+..||++.-+... .
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~s-----------K---- 315 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVA-----------K---- 315 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecC-----------C----
Confidence 899999999853 248999999999655555445 345567888877654211 1
Q ss_pred HHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH----HHHHHHhhccc--CCCccCHHHHHHhhcccccc
Q 002623 821 ETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL----QVSFSKVSWIY--SPWHFNYEMLVKFCYLAFTI 894 (899)
Q Consensus 821 ~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~----~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 894 (899)
++.+-|+|-+||...|.+.+|+.+|+..|+-. .++++..=+.. -...|+.+++.+++..+|.+
T Consensus 316 -----------PSDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~v 384 (444)
T COG1220 316 -----------PSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQV 384 (444)
T ss_pred -----------hhhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHh
Confidence 57788999999999999999999999988754 23333221111 24689999999999999987
Q ss_pred cc
Q 002623 895 RS 896 (899)
Q Consensus 895 ~~ 896 (899)
+.
T Consensus 385 N~ 386 (444)
T COG1220 385 NE 386 (444)
T ss_pred cc
Confidence 64
No 242
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.6e-13 Score=156.62 Aligned_cols=189 Identities=22% Similarity=0.317 Sum_probs=140.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCC----CCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSD----PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA 723 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~----~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~ 723 (899)
+.++.|.+++++.+.+.+.-.+...++ -.-|. .++++||||||||.+|+++|-.. +.||+.+..|++.+.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPk-GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem-- 222 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM-- 222 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhccccccc-ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh--
Confidence 577999999999999888654422111 01233 39999999999999999999988 899999999998554
Q ss_pred hhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccCh--------------HHHHHHHHhhcCCeeecCCCceee
Q 002623 724 VSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRTVS 789 (899)
Q Consensus 724 ~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 789 (899)
++|. |....+.+++..+++.+||+||||||.... ..+|.||..||.-. .
T Consensus 223 ---fVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~---------~ 285 (596)
T COG0465 223 ---FVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---------G 285 (596)
T ss_pred ---hcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC---------C
Confidence 3443 233346788888877789999999998652 36888888887421 1
Q ss_pred eCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHHH
Q 002623 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 790 ~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
...+++|++||. ...++|+|+ +|||..|.++.++-...++|++-.++.
T Consensus 286 ~~gviviaaTNR------------------------------pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 286 NEGVIVIAATNR------------------------------PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN 335 (596)
T ss_pred CCceEEEecCCC------------------------------cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc
Confidence 135889999999 677888888 899999999999988888998866664
Q ss_pred HHh-------hcccCCCccCHHHHHHhhc
Q 002623 868 SKV-------SWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 868 ~~~-------~~~~~~~~~~~~~l~~~~~ 889 (899)
... ......++|+.+.+..++.
T Consensus 336 ~~l~~~Vdl~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 336 KPLAEDVDLKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred CCCCCcCCHHHHhhhCCCcccchHhhhHH
Confidence 332 1223456777777777664
No 243
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=4.2e-12 Score=143.31 Aligned_cols=212 Identities=21% Similarity=0.287 Sum_probs=141.3
Q ss_pred CCCCcCchHHHHHHHHHhhc----CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc-----
Q 002623 254 LDPVIGRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~----~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 324 (899)
.+.++||+++++.+...+.. ..+.+++|+||||||||++++.+++.+.... +..-....++.+||.....
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECCCCCCHHHHH
Confidence 34689999999999888753 4557899999999999999999999874311 0000126788888765321
Q ss_pred ----------ccc--ccc-hHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhh-----cCCCeE
Q 002623 325 ----------GAK--YRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML-----GRGELR 386 (899)
Q Consensus 325 ----------~~~--~~g-~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l-----~~~~v~ 386 (899)
+.. ..| ...+.+..++..+...+.+.||+|||+|.+.+.. .++...|..+. ...++.
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cHHHHhHhccccccCCCCCeEE
Confidence 110 111 1233344555555444567899999999997322 22333333431 235788
Q ss_pred EEEecChhHHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCCh
Q 002623 387 CIGATTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 464 (899)
Q Consensus 387 ~I~at~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p 464 (899)
+|+++|...+.. .+++.+.+||. .|.|++++.+++.+|++..++.. ..+..++++++..++..+.+. ..-+
T Consensus 168 lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~---~Gd~ 240 (365)
T TIGR02928 168 VIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQE---HGDA 240 (365)
T ss_pred EEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHh---cCCH
Confidence 999998876532 46899999995 68999999999999998777531 123457888888777765422 1246
Q ss_pred hhHHHHHHHHHHhh
Q 002623 465 DKAIDLVDEAAAKL 478 (899)
Q Consensus 465 ~~a~~lld~a~~~~ 478 (899)
..+++++..|+..+
T Consensus 241 R~al~~l~~a~~~a 254 (365)
T TIGR02928 241 RKAIDLLRVAGEIA 254 (365)
T ss_pred HHHHHHHHHHHHHH
Confidence 68888888887544
No 244
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.8e-13 Score=140.95 Aligned_cols=148 Identities=24% Similarity=0.382 Sum_probs=113.2
Q ss_pred cEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh----hCCCeEEEE
Q 002623 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE----SEGQIILFI 354 (899)
Q Consensus 279 ~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~----~~~~~IL~i 354 (899)
+||+||||||||+|+++||+.+.=. .........++++|+.++. +++-++....+.++|+.+.. .+.-+.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5899999999999999999998421 1112246789999999998 45778877777777777664 223356679
Q ss_pred ccchhhccCCC-------CCchHHHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCCHHH
Q 002623 355 DEIHTVVGAGA-------TNGAMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNVED 422 (899)
Q Consensus 355 DEi~~l~~~~~-------~~~~~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~ee 422 (899)
||++.|..++. +..+..+.|.|+.-++ ..++.+.+|+|-.+ .+|.||.+|-+ ..+|.+|+.+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 99999875542 1245677777776665 35777777777776 78999999998 78999999999
Q ss_pred HHHHHHHHHHHH
Q 002623 423 TISILRGLRERY 434 (899)
Q Consensus 423 ~~~Il~~~~~~~ 434 (899)
+.+|++..++.+
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 245
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.47 E-value=5.4e-13 Score=142.24 Aligned_cols=100 Identities=16% Similarity=0.297 Sum_probs=70.6
Q ss_pred eEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHH
Q 002623 753 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 832 (899)
Q Consensus 753 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (899)
|||||||++.++-+.+..|.++||.. -..++|++||.|...+.+ .+... .
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~------------~sPiiIlATNRg~~~irG---t~~~s---------------p 329 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESE------------LSPIIILATNRGITKIRG---TDIIS---------------P 329 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTST------------T--EEEEEES-SEEE-BT---TS-EE---------------E
T ss_pred ceEEecchhhccHHHHHHHHHHhcCC------------CCcEEEEecCceeeeccC---ccCcC---------------C
Confidence 89999999999999999999999972 135788999998766543 11111 5
Q ss_pred hcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhcc
Q 002623 833 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYL 890 (899)
Q Consensus 833 ~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 890 (899)
..++.+|++|| .+|+..||+.+++.+|+...++..+ ..++++++..++..
T Consensus 330 hGiP~DlLDRl-lII~t~py~~~ei~~Il~iR~~~E~-------v~i~~~al~~L~~i 379 (398)
T PF06068_consen 330 HGIPLDLLDRL-LIIRTKPYSEEEIKQILKIRAKEED-------VEISEDALDLLTKI 379 (398)
T ss_dssp TT--HHHHTTE-EEEEE----HHHHHHHHHHHHHHCT---------B-HHHHHHHHHH
T ss_pred CCCCcchHhhc-EEEECCCCCHHHHHHHHHhhhhhhc-------CcCCHHHHHHHHHH
Confidence 67889999999 9999999999999999999988766 55778887777653
No 246
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.2e-13 Score=159.57 Aligned_cols=170 Identities=20% Similarity=0.329 Sum_probs=113.9
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC---c-eE---Eeccccc--
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE---A-LV---RIDMSEY-- 718 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~---~-~~---~i~~~~~-- 718 (899)
+++++||+.+++.|.+++...+... .+||+||+|||||++|+.+|+.++.... + +. .-.|...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~h--------a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~s 86 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGH--------GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECES 86 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCe--------eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHH
Confidence 5679999999999988875422111 3999999999999999999999954210 0 00 0112221
Q ss_pred ----hhhhh--hhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCcee
Q 002623 719 ----MEKHA--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 719 ----~~~~~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
..... +..+-| .+..+.++.+.+.+.+. ...+.|+||||+|.++...+|.|+..||+
T Consensus 87 C~~~~~g~~~n~~~~d~--~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe----------- 153 (620)
T PRK14954 87 CRDFDAGTSLNISEFDA--ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE----------- 153 (620)
T ss_pred HHHHhccCCCCeEEecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-----------
Confidence 11000 001111 11122222333333442 23467999999999999999999999997
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
....++||++|+. ...+.+.+.+|| .++.|.+++.+++...+...+.+.
T Consensus 154 Pp~~tv~IL~t~~------------------------------~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~e 202 (620)
T PRK14954 154 PPPHAIFIFATTE------------------------------LHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAE 202 (620)
T ss_pred CCCCeEEEEEeCC------------------------------hhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHc
Confidence 3346778777765 356667899999 999999999999998888777654
Q ss_pred H
Q 002623 869 K 869 (899)
Q Consensus 869 ~ 869 (899)
+
T Consensus 203 g 203 (620)
T PRK14954 203 G 203 (620)
T ss_pred C
Confidence 3
No 247
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.7e-13 Score=158.11 Aligned_cols=169 Identities=20% Similarity=0.325 Sum_probs=113.0
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ceE-Eeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~~ 722 (899)
+++|+||+.++..|...+...+. ++ .+||+||+|+|||++|+++|+.+..... ++- .-+|..+....
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i----~h----ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKI----AN----AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDN 86 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC----Ce----EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCC
Confidence 56899999999999998864221 11 4999999999999999999999954211 110 01111111100
Q ss_pred h--hhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 723 A--VSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 723 ~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
. +..+-|.. ..+..+.+.+.+.+. ...+.|++|||+|.++...+|.|+..||+ ....++||
T Consensus 87 ~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp~~~vfI 153 (563)
T PRK06647 87 SLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PPPYIVFI 153 (563)
T ss_pred CCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CCCCEEEE
Confidence 0 00111111 112122222222222 24567999999999999999999999997 33578888
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
++|+. ...+.+++.+|| ..+.|.+++.+++..++...+.+.
T Consensus 154 ~~tte------------------------------~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 154 FATTE------------------------------VHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred EecCC------------------------------hHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 88765 345678899999 789999999999988888777654
No 248
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.46 E-value=2.5e-13 Score=148.07 Aligned_cols=180 Identities=17% Similarity=0.264 Sum_probs=118.5
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC----CCceEEecccc-----
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT----EEALVRIDMSE----- 717 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~----~~~~~~i~~~~----- 717 (899)
.+..|+||++++..|..++.. | .+|.+||.||+|||||++|+++++.+... +.+|. .+...
T Consensus 15 pf~~ivGq~~~k~al~~~~~~-------p--~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~ 84 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID-------P--KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMS 84 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC-------C--CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhc
Confidence 467899999999988776532 2 23569999999999999999999988431 22332 00000
Q ss_pred ------------------------chhhhhhhhhcCCCCCCccccccc--chhHHHhhCCCeEEEEeCCCccChHHHHHH
Q 002623 718 ------------------------YMEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVF 771 (899)
Q Consensus 718 ------------------------~~~~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~lDEid~l~~~~~~~L 771 (899)
+....+...++|.-.-......+. .-.+.+.++.+++||+|||+.+++.+|+.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 000001112222100000000000 012345567789999999999999999999
Q ss_pred HHhhcCCeeec-CCCceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEec
Q 002623 772 LQILDDGRVTD-SQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF 849 (899)
Q Consensus 772 l~~le~g~~~~-~~g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f 849 (899)
+++|++|..+. ..|..... .++++|+|+|+. .+.|+++|++||..++.+
T Consensus 165 Leam~e~~~~ier~G~s~~~p~rfiviaT~np~-----------------------------eg~l~~~LldRf~l~i~l 215 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGMHAEI 215 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc-----------------------------cCCCCHHHHHHhCceeec
Confidence 99999876543 23444433 488889998881 346899999999999999
Q ss_pred CCCC-HHHHHHHHHHHH
Q 002623 850 QPLD-RDQISSIVRLQV 865 (899)
Q Consensus 850 ~~l~-~e~i~~I~~~~l 865 (899)
.+++ +++..+|+++..
T Consensus 216 ~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 216 RTVKDPELRVKIVEQRT 232 (350)
T ss_pred CCCCChHHHHHHHHhhh
Confidence 9987 577778887753
No 249
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.46 E-value=1.7e-12 Score=144.68 Aligned_cols=187 Identities=25% Similarity=0.329 Sum_probs=128.4
Q ss_pred CcCchHHHHHHHHHhh----c-------C-------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE
Q 002623 257 VIGRDDEIRRCIQILS----R-------R-------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~----~-------~-------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 318 (899)
+|||+..++.+...+. + . .+.++||+||||||||++|++||..+ +.++..++
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~d 148 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIAD 148 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEec
Confidence 8999998887765541 1 1 13689999999999999999999988 78899999
Q ss_pred cccccccccccchH-HHHHHHHHHHHH---hhCCCeEEEEccchhhccCCCCC------chHHHHHHHhhhhcC------
Q 002623 319 MGALIAGAKYRGEF-EDRLKAVLKEVT---ESEGQIILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGR------ 382 (899)
Q Consensus 319 ~~~l~~~~~~~g~~-~~~l~~l~~~~~---~~~~~~IL~iDEi~~l~~~~~~~------~~~~~~~~L~~~l~~------ 382 (899)
++.+.. ..|.|+. +..+..++.... ....++||||||+|.+.....+. ....+++.|+++|+.
T Consensus 149 a~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 149 ATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred hhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 887643 3477763 444444443211 12356799999999998643221 123678888888841
Q ss_pred ---C------CeEEEEecChh-------------------------------------HHH--------hhhccCHHHHc
Q 002623 383 ---G------ELRCIGATTLD-------------------------------------EYR--------KYIEKDPALER 408 (899)
Q Consensus 383 ---~------~v~~I~at~~~-------------------------------------~~~--------~~~~~d~al~~ 408 (899)
| +.++|.|+|.- .+. ..+.+.|+|..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 1 33466666540 000 01125699999
Q ss_pred cCc-eEEecCCCHHHHHHHHHH----HHHHHhhhh-----CCCCCHHHHHHHHHhc
Q 002623 409 RFQ-QVYVDQPNVEDTISILRG----LRERYELHH-----GVRISDSALVEAAILS 454 (899)
Q Consensus 409 Rf~-~i~~~~ps~ee~~~Il~~----~~~~~~~~~-----~~~i~~~~l~~~~~ls 454 (899)
|++ .+.|.+.+.+++.+|+.. +.++|.... .+.+++++++++++.+
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 998 567888899999999865 455554322 4579999999999875
No 250
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.46 E-value=1.6e-13 Score=143.12 Aligned_cols=136 Identities=18% Similarity=0.310 Sum_probs=98.0
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||++|+.|+.........||.+....-.. .++..+|..... +..--....|||||||
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-~dvR~ife~aq~-----------~~~l~krkTilFiDEi 231 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-NDVRDIFEQAQN-----------EKSLTKRKTILFIDEI 231 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch-HHHHHHHHHHHH-----------HHhhhcceeEEEeHHh
Confidence 5999999999999999999998854444466655443211 112222211100 0000122469999999
Q ss_pred CccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH
Q 002623 761 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 840 (899)
Q Consensus 761 d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll 840 (899)
++++...|+.||..+|.|. +++|.+|.-.+ .-.+..+|+
T Consensus 232 HRFNksQQD~fLP~VE~G~-------------I~lIGATTENP----------------------------SFqln~aLl 270 (554)
T KOG2028|consen 232 HRFNKSQQDTFLPHVENGD-------------ITLIGATTENP----------------------------SFQLNAALL 270 (554)
T ss_pred hhhhhhhhhcccceeccCc-------------eEEEecccCCC----------------------------ccchhHHHH
Confidence 9999999999999999874 56777765422 345678999
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHHHHHh
Q 002623 841 NRVDEYIVFQPLDRDQISSIVRLQVSFSKV 870 (899)
Q Consensus 841 ~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~ 870 (899)
+|| .++.+.+|..+++..|+.+.+.-++.
T Consensus 271 SRC-~VfvLekL~~n~v~~iL~raia~l~d 299 (554)
T KOG2028|consen 271 SRC-RVFVLEKLPVNAVVTILMRAIASLGD 299 (554)
T ss_pred hcc-ceeEeccCCHHHHHHHHHHHHHhhcc
Confidence 999 99999999999999999998886663
No 251
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=7.8e-13 Score=147.56 Aligned_cols=182 Identities=18% Similarity=0.378 Sum_probs=120.4
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC--CceEEeccccchhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--EALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--~~~~~i~~~~~~~~~~~~ 725 (899)
+++++|++.+++.+...+.. +..| +++|+||||||||++|+++++.+++.. .+++.++++++.....
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~-------~~~~--~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~-- 82 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS-------PNLP--HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK-- 82 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC-------CCCc--eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--
Confidence 45688999998888877642 1112 599999999999999999999986543 4678889887642210
Q ss_pred hhcCCCCCCc---------ccccccchhHHHh--------hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCcee
Q 002623 726 RLIGAPPGYV---------GYEEGGQLTEVVR--------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 726 ~l~g~~~~~~---------g~~~~~~l~~~~~--------~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
..++..+.+. +......+.+.++ ..++.+|+|||++.+++..++.|+..|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~---------- 152 (337)
T PRK12402 83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY---------- 152 (337)
T ss_pred hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc----------
Confidence 0111111100 0000111112111 134579999999999999999999999862
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
..++.||++++. ...+.+.+.+|+ ..+.|.|++.+++..++...+.+.
T Consensus 153 -~~~~~~Il~~~~------------------------------~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~ 200 (337)
T PRK12402 153 -SRTCRFIIATRQ------------------------------PSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAE 200 (337)
T ss_pred -cCCCeEEEEeCC------------------------------hhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 134667777765 233456788998 789999999999999988887765
Q ss_pred HhhcccCCCccCHHHHHHhhc
Q 002623 869 KVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 869 ~~~~~~~~~~~~~~~l~~~~~ 889 (899)
+ ..++++++..++.
T Consensus 201 ~-------~~~~~~al~~l~~ 214 (337)
T PRK12402 201 G-------VDYDDDGLELIAY 214 (337)
T ss_pred C-------CCCCHHHHHHHHH
Confidence 4 2355565544443
No 252
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=6.7e-13 Score=154.26 Aligned_cols=172 Identities=24% Similarity=0.304 Sum_probs=123.2
Q ss_pred cceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhc
Q 002623 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (899)
++++|++.+++.+...+..+..|.. ..++||+||||||||++|+++++.+ +..++.+++++......+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~-----~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKP-----KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCC-----CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHH
Confidence 4689999999999999887654322 1269999999999999999999998 7789999998875544444444
Q ss_pred CCCCCCcccccccchhHHHhhCCCeEEEEeCCCccCh----HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChh
Q 002623 729 GAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS----DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (899)
Q Consensus 729 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~----~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~ 804 (899)
+...... .++ ...+.||+|||+|.++. ..++.|+.+++.. +..||+++|.
T Consensus 86 ~~~~~~~------sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iIli~n~--- 139 (482)
T PRK04195 86 GEAATSG------SLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKKA-------------KQPIILTAND--- 139 (482)
T ss_pred HHhhccC------ccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHcC-------------CCCEEEeccC---
Confidence 3321110 111 12457999999999976 5788999998752 3456777776
Q ss_pred hhhccCCCCCCCcchHHHHHHHHHHHHHhcCCh-HHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHH
Q 002623 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRP-EFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEM 883 (899)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~ 883 (899)
...+.+ .+.+|| ..|.|++++.+++..++...+.+.+ ..+++++
T Consensus 140 ---------------------------~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-------i~i~~ea 184 (482)
T PRK04195 140 ---------------------------PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-------IECDDEA 184 (482)
T ss_pred ---------------------------ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-------CCCCHHH
Confidence 222333 677888 8899999999999999988887544 3355555
Q ss_pred HHHhhc
Q 002623 884 LVKFCY 889 (899)
Q Consensus 884 l~~~~~ 889 (899)
+..++.
T Consensus 185 L~~Ia~ 190 (482)
T PRK04195 185 LKEIAE 190 (482)
T ss_pred HHHHHH
Confidence 544443
No 253
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=3.8e-13 Score=146.40 Aligned_cols=167 Identities=20% Similarity=0.372 Sum_probs=115.3
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch-hhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM-EKHAVS 725 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~-~~~~~~ 725 (899)
.+++|+||+.+++.+..++...+... .+||+||+|+||+++|.++|+.++..+..-....|. +. ..|...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~h--------a~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~-~~~~~hPDl 72 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAP--------AYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRR-LEEGNHPDL 72 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCc--------eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcc-cccCCCCCE
Confidence 35789999999999999987543211 499999999999999999999996543100000111 10 001000
Q ss_pred hhc-------CC---------------CCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCe
Q 002623 726 RLI-------GA---------------PPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGR 779 (899)
Q Consensus 726 ~l~-------g~---------------~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~ 779 (899)
.++ |. ..+.++.++.+.+...+.. ..+.|++||++|+|+...+|+||+.||+
T Consensus 73 ~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE-- 150 (314)
T PRK07399 73 LWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-- 150 (314)
T ss_pred EEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC--
Confidence 000 11 0111222233344455543 3468999999999999999999999997
Q ss_pred eecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHH
Q 002623 780 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 859 (899)
Q Consensus 780 ~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~ 859 (899)
+. +++||++|+. .+.+.|.+++|| ++++|++++.+++.+
T Consensus 151 ---------Pp-~~~fILi~~~------------------------------~~~Ll~TI~SRc-q~i~f~~l~~~~~~~ 189 (314)
T PRK07399 151 ---------PG-NGTLILIAPS------------------------------PESLLPTIVSRC-QIIPFYRLSDEQLEQ 189 (314)
T ss_pred ---------CC-CCeEEEEECC------------------------------hHhCcHHHHhhc-eEEecCCCCHHHHHH
Confidence 22 6678888776 567889999999 999999999999998
Q ss_pred HHHHHH
Q 002623 860 IVRLQV 865 (899)
Q Consensus 860 I~~~~l 865 (899)
++....
T Consensus 190 ~L~~~~ 195 (314)
T PRK07399 190 VLKRLG 195 (314)
T ss_pred HHHHhh
Confidence 888764
No 254
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.45 E-value=1.3e-12 Score=135.23 Aligned_cols=210 Identities=14% Similarity=0.141 Sum_probs=159.3
Q ss_pred HHHhhcccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE
Q 002623 237 ALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (899)
Q Consensus 237 ~l~~~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 316 (899)
.-.++..+|.++++|..+++++++++.+..+.......+..|+|+|||||+|||+.+.+.|..+++...+ +..+.+
T Consensus 23 ~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----~~m~le 98 (360)
T KOG0990|consen 23 QSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT----TSMLLE 98 (360)
T ss_pred CCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----hhHHHH
Confidence 3456778999999999999999999999999888777788899999999999999999999999663111 333555
Q ss_pred EEcccccccccccchHHHHHHHHHHHHHh------hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEE
Q 002623 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTE------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCI 388 (899)
Q Consensus 317 l~~~~l~~~~~~~g~~~~~l~~l~~~~~~------~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I 388 (899)
++.++-. ..+-..+.+ ..|..... ......+++||+|.+. .+++|.|++..+. .+.+++
T Consensus 99 lnaSd~r----gid~vr~qi-~~fast~~~~~fst~~~fKlvILDEADaMT--------~~AQnALRRviek~t~n~rF~ 165 (360)
T KOG0990|consen 99 LNASDDR----GIDPVRQQI-HLFASTQQPTTYSTHAAFKLVILDEADAMT--------RDAQNALRRVIEKYTANTRFA 165 (360)
T ss_pred hhccCcc----CCcchHHHH-HHHHhhccceeccccCceeEEEecchhHhh--------HHHHHHHHHHHHHhccceEEE
Confidence 5554422 222233332 23333321 1246689999999998 8999999998874 467777
Q ss_pred EecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHH
Q 002623 389 GATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468 (899)
Q Consensus 389 ~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~ 468 (899)
..+|+.. .+.|++++||+.+.|.+.+.++....+..+++. .....+++...+++.++.+.+ .++.
T Consensus 166 ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~----e~~~~~~~~~~a~~r~s~gDm------r~a~ 230 (360)
T KOG0990|consen 166 TISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRES----EQKETNPEGYSALGRLSVGDM------RVAL 230 (360)
T ss_pred EeccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHhc----chhhcCHHHHHHHHHHhHHHH------HHHH
Confidence 7788876 689999999999999999998888888888876 778889999888888886532 2567
Q ss_pred HHHHHHHHhh
Q 002623 469 DLVDEAAAKL 478 (899)
Q Consensus 469 ~lld~a~~~~ 478 (899)
+.|+...+..
T Consensus 231 n~Lqs~~~~~ 240 (360)
T KOG0990|consen 231 NYLQSILKKV 240 (360)
T ss_pred HHHHHHHHHh
Confidence 7777666554
No 255
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.44 E-value=1.8e-12 Score=135.50 Aligned_cols=99 Identities=18% Similarity=0.329 Sum_probs=79.7
Q ss_pred eEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHH
Q 002623 753 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 832 (899)
Q Consensus 753 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (899)
|||||||++.++-+.+..|.++||+- --.++|++||.|.+.+.+ .+... +
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse------------~aPIii~AtNRG~~kiRG---Td~~s---------------P 342 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE------------LAPIIILATNRGMTKIRG---TDIES---------------P 342 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcc------------cCcEEEEEcCCceeeecc---cCCcC---------------C
Confidence 89999999999999999999999972 135788999998776644 11111 6
Q ss_pred hcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 833 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 833 ~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
..++.+|++|+ .+|...|++.++++.|++...+... ..++.+++..+..
T Consensus 343 hGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~-------i~l~~~Ale~L~~ 391 (450)
T COG1224 343 HGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEED-------IELSDDALEYLTD 391 (450)
T ss_pred CCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhc-------cccCHHHHHHHHh
Confidence 78899999999 9999999999999999999888776 3455666655544
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.44 E-value=1.9e-13 Score=131.34 Aligned_cols=137 Identities=22% Similarity=0.406 Sum_probs=104.7
Q ss_pred eccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCC
Q 002623 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP 731 (899)
Q Consensus 652 ~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~ 731 (899)
+|.+.+++.+...+........ +++|+|++||||+++|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~-------pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSS-------PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS--------EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCC-------cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 5889999999999988764333 499999999999999999999987767788888887652
Q ss_pred CCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCC
Q 002623 732 PGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDD 811 (899)
Q Consensus 732 ~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~ 811 (899)
.+.+..+.+++|||+|+|.++++.|..|++.|+... ..++++|+||..+...+.+
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhh---
Confidence 234555677899999999999999999999998631 2467999999886655433
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCC
Q 002623 812 ETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPL 852 (899)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l 852 (899)
.+.|.++|+.||+. .|.+|||
T Consensus 117 --------------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 --------------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------------------HSTHHHHHHHHCSTCEEEE---
T ss_pred --------------------ccchhHHHHHHhCCCEEeCCCC
Confidence 67889999999976 7888886
No 257
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=5.5e-13 Score=157.23 Aligned_cols=172 Identities=18% Similarity=0.290 Sum_probs=113.6
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCc-eEEeccccch---hhh-
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEA-LVRIDMSEYM---EKH- 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~-~~~i~~~~~~---~~~- 722 (899)
+.+++||+.++..|...+...+.. + ++||+||+|+|||++|+++|+.++..... ...-.|.... ...
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~---~-----a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIA---P-----AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAA 86 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCC---c-----eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhc
Confidence 567999999999998888643211 1 59999999999999999999999542110 0001122110 000
Q ss_pred -hhhhhcCCC-CCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 723 -AVSRLIGAP-PGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 723 -~~~~l~g~~-~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
....++... ....+.+..+.+.+.+.. ..+.|+||||+|.++.+.++.|+..||+ ...+++||
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp~~tvfI 155 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PPPRVVFV 155 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CCcCeEEE
Confidence 000000000 111222222333333332 3467999999999999999999999997 33568888
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
++|+. ...+.|.+++|| ..+.|.+++.+++...+...+.+.+
T Consensus 156 L~t~~------------------------------~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 156 LATTD------------------------------PQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred EEeCC------------------------------hhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhC
Confidence 88775 345678899999 8999999999988887777666543
No 258
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=4.9e-12 Score=139.57 Aligned_cols=201 Identities=16% Similarity=0.162 Sum_probs=135.5
Q ss_pred HhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCC----ccccC----CC-------
Q 002623 249 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDV----PQALM----NR------- 312 (899)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~----p~~l~----~~------- 312 (899)
..|..++.++|++..+..+...+......| +||+||+|+|||++|+.+|+.+.+... |..+. .+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 357788899999999999999887766555 799999999999999999999977321 11111 11
Q ss_pred -----eEEEEEcccccccccc-cchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC
Q 002623 313 -----KLISLDMGALIAGAKY-RGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG 383 (899)
Q Consensus 313 -----~~~~l~~~~l~~~~~~-~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~ 383 (899)
.++.+....-..+.+. ..-..+.++.+...+.. .++.-|++|||+|.+. ..+.|.|+..+++.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~--------~~aanaLLk~LEEp 168 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN--------RNAANAILKTLEEP 168 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC--------HHHHHHHHHHHhcC
Confidence 1222221100000000 11112234444333332 3456799999999997 67788899999864
Q ss_pred --CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCC
Q 002623 384 --ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGR 461 (899)
Q Consensus 384 --~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~ 461 (899)
+..+|..|+.+. .+.|.+++||..+.|++|+.++...++...... .+ ++++++..++.++.+
T Consensus 169 p~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~--~~~~~~~~i~~~s~G----- 232 (351)
T PRK09112 169 PARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG--SDGEITEALLQRSKG----- 232 (351)
T ss_pred CCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC--CCHHHHHHHHHHcCC-----
Confidence 455566565554 567999999999999999999999988763211 22 678888888888864
Q ss_pred CChhhHHHHHHHH
Q 002623 462 FLPDKAIDLVDEA 474 (899)
Q Consensus 462 ~~p~~a~~lld~a 474 (899)
.|..|+.++...
T Consensus 233 -~pr~Al~ll~~~ 244 (351)
T PRK09112 233 -SVRKALLLLNYG 244 (351)
T ss_pred -CHHHHHHHHhcC
Confidence 577788777553
No 259
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=2.2e-12 Score=135.33 Aligned_cols=176 Identities=17% Similarity=0.209 Sum_probs=120.5
Q ss_pred CCCCCc-CchHHHHHHHHHhhc----CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc
Q 002623 253 KLDPVI-GRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (899)
Q Consensus 253 ~l~~ii-G~~~~i~~~~~~l~~----~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~ 327 (899)
+|++++ |........++.+.. ...++++|+||+|||||+|++++++++.. .+..++.++...+...
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~-------~~~~v~y~~~~~~~~~-- 87 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQ-------RGEPAVYLPLAELLDR-- 87 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEeeHHHHHhh--
Confidence 566665 444444444433311 12356789999999999999999998743 2567778877665421
Q ss_pred ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHH
Q 002623 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 407 (899)
Q Consensus 328 ~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~ 407 (899)
...+++.+...+ +|+|||++.+.+... .......++....++|..++|++++.+.+- ....|.++
T Consensus 88 --------~~~~~~~~~~~d---~LiiDDi~~~~~~~~--~~~~Lf~l~n~~~~~g~~ilits~~~p~~l--~~~~~~L~ 152 (234)
T PRK05642 88 --------GPELLDNLEQYE---LVCLDDLDVIAGKAD--WEEALFHLFNRLRDSGRRLLLAASKSPREL--PIKLPDLK 152 (234)
T ss_pred --------hHHHHHhhhhCC---EEEEechhhhcCChH--HHHHHHHHHHHHHhcCCEEEEeCCCCHHHc--CccCccHH
Confidence 122333333222 899999998764322 124466666666678888888887766541 12379999
Q ss_pred ccC---ceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 408 RRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 408 ~Rf---~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
+|| ..+.+.+|+.+++..+++..+.. .++.++++++++++..+.+
T Consensus 153 SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 999 46789999999999999865544 4789999999999988865
No 260
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.44 E-value=5.7e-13 Score=126.88 Aligned_cols=118 Identities=30% Similarity=0.501 Sum_probs=88.4
Q ss_pred eEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCC-CeEEEEeCC
Q 002623 682 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRP-YAVILFDEI 760 (899)
Q Consensus 682 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~-~~vl~lDEi 760 (899)
+||+||||||||++|+.+++.+ +.+++.++++++..... +. .......++..++... ++||||||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~~~-----~~-----~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISSYA-----GD-----SEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTSST-----TH-----HHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccccc-----cc-----cccccccccccccccccceeeeeccc
Confidence 6899999999999999999999 78999999998853210 00 0001122333444444 799999999
Q ss_pred CccChHH-----------HHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHH
Q 002623 761 EKAHSDV-----------FNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMD 829 (899)
Q Consensus 761 d~l~~~~-----------~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (899)
|.+.+.. ++.|+..++...- ...+++||+|||.
T Consensus 68 d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~~~~vI~ttn~---------------------------- 111 (132)
T PF00004_consen 68 DKLFPKSQPSSSSFEQRLLNQLLSLLDNPSS--------KNSRVIVIATTNS---------------------------- 111 (132)
T ss_dssp GGTSHHCSTSSSHHHHHHHHHHHHHHHTTTT--------TSSSEEEEEEESS----------------------------
T ss_pred hhcccccccccccccccccceeeeccccccc--------ccccceeEEeeCC----------------------------
Confidence 9988765 8899999986321 1246999999998
Q ss_pred HHHhcCChHHH-hccceEEecC
Q 002623 830 AARSIFRPEFM-NRVDEYIVFQ 850 (899)
Q Consensus 830 ~~~~~~~p~ll-~R~d~~i~f~ 850 (899)
...++|+++ +||+..|.|+
T Consensus 112 --~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 112 --PDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp --GGGSCHHHHSTTSEEEEEE-
T ss_pred --hhhCCHhHHhCCCcEEEEcC
Confidence 788999999 9999988876
No 261
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=5.5e-13 Score=157.31 Aligned_cols=170 Identities=24% Similarity=0.387 Sum_probs=114.5
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC-----Cce-EEeccccchhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE-----EAL-VRIDMSEYMEK 721 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~-----~~~-~~i~~~~~~~~ 721 (899)
+++|+||+.+++.|...+...+. ++ .+||+||+|+|||++|+.+|+.+.... .++ ..-+|..+...
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l----~h----ayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKL----AH----AYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC----Ce----eEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 56899999999999888864221 11 389999999999999999999985211 000 00011111111
Q ss_pred hhh--hhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEE
Q 002623 722 HAV--SRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVI 795 (899)
Q Consensus 722 ~~~--~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 795 (899)
... ..+-+. +..+..+.+.+.+.+.. ..+.|++|||+|.++.+.++.|+..||+ ...+++|
T Consensus 88 ~~~n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-----------pp~~tif 154 (614)
T PRK14971 88 RSYNIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-----------PPSYAIF 154 (614)
T ss_pred CCCceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------CCCCeEE
Confidence 000 011111 11111222222222232 3467999999999999999999999997 3346888
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
|++|+. ...+.+.+++|| .++.|.+++.+++...+...+.+.+
T Consensus 155 IL~tt~------------------------------~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 155 ILATTE------------------------------KHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred EEEeCC------------------------------chhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC
Confidence 888875 567788999999 8899999999999988888777654
No 262
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.43 E-value=6.7e-12 Score=127.85 Aligned_cols=192 Identities=24% Similarity=0.330 Sum_probs=135.1
Q ss_pred CCCCCCcCchHHHHHHHH----HhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc
Q 002623 252 GKLDPVIGRDDEIRRCIQ----ILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~----~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~ 327 (899)
-.+++++|.+...+.+++ .+...+.+|+||+|+.|||||++++++..+... .|.++++++-..+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-------~GLRlIev~k~~L~---- 92 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVSKEDLG---- 92 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-------cCceEEEECHHHhc----
Confidence 356678998876666665 456678899999999999999999999999844 37899999765554
Q ss_pred ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC------CeEEEEecChhHHH----
Q 002623 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------ELRCIGATTLDEYR---- 397 (899)
Q Consensus 328 ~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------~v~~I~at~~~~~~---- 397 (899)
.+..+++.+.....+.|||+|++- +..+ ......|+.+|+.| ++.+.+|+|.-..-
T Consensus 93 -------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 93 -------DLPELLDLLRDRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred -------cHHHHHHHHhcCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhh
Confidence 366677777766678999999974 3333 34457788888754 88888888853221
Q ss_pred -hhh-----ccC--------HHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHH-HHHHHhcccccCCC
Q 002623 398 -KYI-----EKD--------PALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSAL-VEAAILSDRYISGR 461 (899)
Q Consensus 398 -~~~-----~~d--------~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l-~~~~~ls~~~i~~~ 461 (899)
..- ++. -+|..||. .|.|.+|+.++-.+|++.++++ .++.++++.+ ..+...+.. .+.
T Consensus 159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l~~~Al~wa~~--rg~ 232 (249)
T PF05673_consen 159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEELRQEALQWALR--RGG 232 (249)
T ss_pred hhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHH--cCC
Confidence 100 111 25777998 8999999999999999999987 6788875433 333333322 122
Q ss_pred CChhhHHHHHHHH
Q 002623 462 FLPDKAIDLVDEA 474 (899)
Q Consensus 462 ~~p~~a~~lld~a 474 (899)
..+..|...++.-
T Consensus 233 RSGRtA~QF~~~l 245 (249)
T PF05673_consen 233 RSGRTARQFIDDL 245 (249)
T ss_pred CCHHHHHHHHHHH
Confidence 3455666665543
No 263
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.42 E-value=7.6e-13 Score=158.03 Aligned_cols=187 Identities=24% Similarity=0.327 Sum_probs=131.3
Q ss_pred cceeccchHHHHHHHHHHHHH-------cCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhh
Q 002623 649 KRVVGQDPAVKSVAEAIQRSR-------AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK 721 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~~~-------~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~ 721 (899)
.++.|.+.++..+...+.... .+... |. .++|+||||||||++|++++..+ +.+|+.++++++...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~---~~-gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~ 224 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI---PK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM 224 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCC---CC-cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh
Confidence 345566666666655543221 11121 22 49999999999999999999998 789999999887432
Q ss_pred hhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccCh--------------HHHHHHHHhhcCCeeecCCCce
Q 002623 722 HAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------DVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 722 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~--------------~~~~~Ll~~le~g~~~~~~g~~ 787 (899)
+.|... ...+.++...+...++||||||+|.+.. .+++.||..|+.- .
T Consensus 225 -----~~g~~~-----~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~--~------ 286 (644)
T PRK10733 225 -----FVGVGA-----SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--E------ 286 (644)
T ss_pred -----hhcccH-----HHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc--c------
Confidence 222211 1113345555666789999999998732 2567777777631 1
Q ss_pred eeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHH
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQV 865 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l 865 (899)
....+++|+|||. ...++|+++ +|||..|.|+.|+.++..+|++.++
T Consensus 287 -~~~~vivIaaTN~------------------------------p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 287 -GNEGIIVIAATNR------------------------------PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred -CCCCeeEEEecCC------------------------------hhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 1236899999999 678889998 5999999999999999999999999
Q ss_pred HHHHh-------hcccCCCccCHHHHHHhhccc
Q 002623 866 SFSKV-------SWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 866 ~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 891 (899)
.+... .+.....+++...+..+|..+
T Consensus 336 ~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 336 RRVPLAPDIDAAIIARGTPGFSGADLANLVNEA 368 (644)
T ss_pred hcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHH
Confidence 87542 122234678888888887654
No 264
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.42 E-value=1.3e-12 Score=146.90 Aligned_cols=170 Identities=19% Similarity=0.336 Sum_probs=111.6
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
.+++++||+.+++.+...+...+. | ..+||+||||+|||++|+.+++.+......- .-.|.....-..+
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~----~----~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~-- 80 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRI----A----HAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKEI-- 80 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCC----C----eEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHHH--
Confidence 356799999999999888753211 1 1489999999999999999999985421100 0112111000000
Q ss_pred hcCCCCC--------CcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEE
Q 002623 727 LIGAPPG--------YVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (899)
Q Consensus 727 l~g~~~~--------~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 794 (899)
..|..+. ..+....+.+.+.+.. .++.||+|||+|.++...++.|+..+++ ...+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~~~~~~ 149 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------PPEHVV 149 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------Ccccee
Confidence 0011110 1111111223333332 2356999999999999999999999986 224677
Q ss_pred EEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 795 iI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
||++||. ...+.+.+.+|| ..+.|++++.+++..++...+++.+
T Consensus 150 lIl~~~~------------------------------~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 150 FILATTE------------------------------PHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred EEEEeCC------------------------------HHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 8888765 345567788999 7899999999999999998887654
No 265
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=6.7e-13 Score=147.26 Aligned_cols=181 Identities=20% Similarity=0.327 Sum_probs=129.2
Q ss_pred cCCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccc-----
Q 002623 251 AGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI----- 323 (899)
Q Consensus 251 ~~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~----- 323 (899)
..+|+++||.++.+.++++..++ +...++||.|++||||..+|++|++...+ .+.||+.+||.++-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R-------~~~PFIaiNCaAiPe~LlE 313 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR-------ANGPFIAINCAAIPETLLE 313 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc-------cCCCeEEEecccCCHHHHH
Confidence 35799999999999999998766 45578999999999999999999988644 47899999999862
Q ss_pred ---cc---ccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------C
Q 002623 324 ---AG---AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (899)
Q Consensus 324 ---~~---~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 384 (899)
-| ..|.|.....-..+|+.| .++.||+|||..|. ...|.-|+++|+.+ +
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A----~gGTLFLDEIgemp--------l~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELA----NGGTLFLDEIGEMP--------LPLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeec----cCCeEEehhhccCC--------HHHHHHHHHHHhhceEEecCCCCceeeE
Confidence 11 113333222112244433 46799999999998 78888899998643 7
Q ss_pred eEEEEecChhHHHhhhccCHHHHc----cCceEEecCCCHH----HHHHHHHHHHHHHhhhhCC--C-CCHHHHHHHHH
Q 002623 385 LRCIGATTLDEYRKYIEKDPALER----RFQQVYVDQPNVE----DTISILRGLRERYELHHGV--R-ISDSALVEAAI 452 (899)
Q Consensus 385 v~~I~at~~~~~~~~~~~d~al~~----Rf~~i~~~~ps~e----e~~~Il~~~~~~~~~~~~~--~-i~~~~l~~~~~ 452 (899)
|++|+|||.+.- +.+. +..|+. |++.+.+..|+.. ++..+.+.+++++...++- . ++++++..+..
T Consensus 382 VRIIAATN~nL~-~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 382 VRIIAATNRNLE-KMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred EEEEeccCcCHH-HHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 899999998763 2222 344444 8888888888754 5555556777776665543 2 67777766533
No 266
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.42 E-value=4.7e-13 Score=122.43 Aligned_cols=106 Identities=30% Similarity=0.470 Sum_probs=67.0
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCC-----CCCcccccccchhHHHhhCCCeEE
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP-----PGYVGYEEGGQLTEVVRRRPYAVI 755 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~-----~~~~g~~~~~~l~~~~~~~~~~vl 755 (899)
|+||.|+||+|||++|+++|+.+ +..|.+|.|..... .+.++|.+ .+...+.. +.++ ..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdll---PsDi~G~~v~~~~~~~f~~~~-GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDLL---PSDILGFPVYDQETGEFEFRP-GPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEEEETTTTEEEEEE--TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCCC---cccceeeeeeccCCCeeEeec-Chhh-------hcee
Confidence 59999999999999999999999 78899998864322 33444431 11111111 1221 2499
Q ss_pred EEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeC-CEEEEEecCC
Q 002623 756 LFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFT-NTVIIMTSNV 801 (899)
Q Consensus 756 ~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~-~~iiI~ttN~ 801 (899)
++|||+++++.+|.+||++|+++.++.. |.+...+ .+.||+|.|+
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-T
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCc
Confidence 9999999999999999999999988753 5555555 5888999998
No 267
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.42 E-value=1.8e-12 Score=141.33 Aligned_cols=222 Identities=18% Similarity=0.240 Sum_probs=130.9
Q ss_pred cCCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcccc-------CC------------
Q 002623 251 AGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL-------MN------------ 311 (899)
Q Consensus 251 ~~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l-------~~------------ 311 (899)
|..|..++|++..++.++-.+-..+..|+||.|+||||||++|++++..+..-...+.+ .+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 45678899999988877765433455799999999999999999999998431111100 00
Q ss_pred ----CeEEEEEcc----cccccccccchHHHHHHH---HH-HHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhh
Q 002623 312 ----RKLISLDMG----ALIAGAKYRGEFEDRLKA---VL-KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (899)
Q Consensus 312 ----~~~~~l~~~----~l~~~~~~~g~~~~~l~~---l~-~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (899)
.+++.+..+ .++++. .++..+.. .+ ........+++|||||++.+. ...++.|.++
T Consensus 84 ~~~~~p~~~~p~~~t~~~l~G~~----d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------~~~q~~Lle~ 151 (334)
T PRK13407 84 IERPTPVVDLPLGVTEDRVVGAL----DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------DHIVDLLLDV 151 (334)
T ss_pred cccCCccccCCCCCCcceeecch----hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------HHHHHHHHHH
Confidence 111111100 011110 01111000 00 000011235699999999997 6788888888
Q ss_pred hcCC---------------CeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCCH-HHHHHHHHHHHHH------H--
Q 002623 380 LGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRER------Y-- 434 (899)
Q Consensus 380 l~~~---------------~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~-ee~~~Il~~~~~~------~-- 434 (899)
|+.+ ++.+|+++|+.+. .+.+++..||. .|.++.|+. +++.+|++..... +
T Consensus 152 mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~----~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~ 227 (334)
T PRK13407 152 AQSGENVVEREGLSIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMA 227 (334)
T ss_pred HHcCCeEEEECCeEEecCCCEEEEecCCcccC----CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhc
Confidence 8755 3577888887552 57899999998 788888855 8888888653210 0
Q ss_pred -------------h----hhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhh--ccCCchhHH
Q 002623 435 -------------E----LHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME--ITSKPTALD 490 (899)
Q Consensus 435 -------------~----~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~--~~~~~~~l~ 490 (899)
. .-..+.++++.+.+++.++...-.. -|.-.+.++..|.+.+.+. ....++++.
T Consensus 228 ~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~--s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~ 300 (334)
T PRK13407 228 KWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSD--GLRGELTLLRAARALAAFEGAEAVGRSHLR 300 (334)
T ss_pred cccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHHcCCCeeCHHHHH
Confidence 0 0124667777777777776543222 3334444555555544433 233444443
No 268
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.41 E-value=1.1e-12 Score=143.08 Aligned_cols=180 Identities=17% Similarity=0.280 Sum_probs=115.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC----CCC--ceEEeccc-cc--
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEE--ALVRIDMS-EY-- 718 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~~--~~~~i~~~-~~-- 718 (899)
+..|+||+++++.+..++.. .| .+|+||.|+||||||++|++++..+.. .+. .+.++.+. +.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~--~~-------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~ 77 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAID--PG-------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAH 77 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhc--cC-------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccccc
Confidence 56799999999887765321 11 237999999999999999999999831 011 11111111 00
Q ss_pred -hh---------------hhhhhhhcCCCCCCccccccc--chhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCee
Q 002623 719 -ME---------------KHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRV 780 (899)
Q Consensus 719 -~~---------------~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~ 780 (899)
.. ..+...++|..--......++ .-.+.+..+.+++||+|||+.+++.+|+.|++.|++|.+
T Consensus 78 ~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 78 VSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred ccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 00 001112333200000000011 112344566778999999999999999999999999875
Q ss_pred ec-CCCceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCH-HHH
Q 002623 781 TD-SQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDR-DQI 857 (899)
Q Consensus 781 ~~-~~g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~-e~i 857 (899)
+. ..|....+ .++++|+|+|+. .+.+++++++||...|.+++++. ++.
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~-----------------------------e~~l~~aLldRF~~~v~v~~~~~~~e~ 208 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGLSVEVRSPRDVETR 208 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCcc-----------------------------cCCCCHHHHhhcceEEEcCCCCcHHHH
Confidence 43 22444444 478999999981 34588999999998888888875 676
Q ss_pred HHHHHHHH
Q 002623 858 SSIVRLQV 865 (899)
Q Consensus 858 ~~I~~~~l 865 (899)
.+|+....
T Consensus 209 ~~il~~~~ 216 (334)
T PRK13407 209 VEVIRRRD 216 (334)
T ss_pred HHHHHHhh
Confidence 77777643
No 269
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.41 E-value=5.5e-13 Score=131.39 Aligned_cols=151 Identities=26% Similarity=0.414 Sum_probs=94.1
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCce-EEeccccchh----hhhhhhh
Q 002623 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEAL-VRIDMSEYME----KHAVSRL 727 (899)
Q Consensus 653 Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~-~~i~~~~~~~----~~~~~~l 727 (899)
||+.+++.|...+...+. |+ .+||+||+|+||+++|+.+++.++.....- ..-.|..... .+....+
T Consensus 1 gq~~~~~~L~~~~~~~~l----~h----a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL----PH----ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC------S----EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCCc----ce----eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 788888888888764321 11 389999999999999999999996543211 1111111110 0111111
Q ss_pred cCCCCC--CcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCC
Q 002623 728 IGAPPG--YVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (899)
Q Consensus 728 ~g~~~~--~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~ 801 (899)
+..... ..+.++.+.+...+. ..++.|++|||+|+|..+.+|+||..||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 221111 233333333333333 23467999999999999999999999998 4468999999987
Q ss_pred ChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC
Q 002623 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (899)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~ 853 (899)
...+.|.+++|| ..|.|+|++
T Consensus 142 ------------------------------~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 ------------------------------PSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp ------------------------------GGGS-HHHHTTS-EEEEE----
T ss_pred ------------------------------hHHChHHHHhhc-eEEecCCCC
Confidence 688899999999 999999875
No 270
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.5e-12 Score=154.14 Aligned_cols=171 Identities=20% Similarity=0.329 Sum_probs=111.6
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR 726 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~ 726 (899)
-+++|+||+.+++.|...+...+.+ ..+||+||+|+|||++|+.+++.++.....-..-.|+....-..+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~--------~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~- 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVA--------HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA- 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh-
Confidence 3568999999999998887643211 1379999999999999999999984311100000111110000000
Q ss_pred hcCCCC--------CCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEE
Q 002623 727 LIGAPP--------GYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (899)
Q Consensus 727 l~g~~~--------~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 794 (899)
-|..+ ...+.++.+.+.+.+.. ..+.||||||+|.++.+.++.|+..||+ ...+++
T Consensus 85 -~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------pp~~tv 152 (585)
T PRK14950 85 -EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHAI 152 (585)
T ss_pred -cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------CCCCeE
Confidence 01111 11222222233333332 3467999999999999999999999997 224677
Q ss_pred EEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 795 iI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
||++++. ...+.+.+.+|| ..+.|.+++.+++..++...+.+.+
T Consensus 153 ~Il~t~~------------------------------~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 153 FILATTE------------------------------VHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred EEEEeCC------------------------------hhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 8877764 344567788999 7899999999999988887776544
No 271
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.40 E-value=8.1e-12 Score=130.69 Aligned_cols=95 Identities=21% Similarity=0.189 Sum_probs=79.3
Q ss_pred CeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-CeEEEEecChh-------HHHhhhccCHHHHccCceEEecCCCH
Q 002623 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLD-------EYRKYIEKDPALERRFQQVYVDQPNV 420 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~~I~at~~~-------~~~~~~~~d~al~~Rf~~i~~~~ps~ 420 (899)
|+||||||+|.|- .+++.+|.++|++. -.++|.|||.- ++..-..++..|++|+-.|...+++.
T Consensus 292 pGVLFIDEvHmLD--------IE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHMLD--------IECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhhh--------HHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 7899999999997 88999999999865 55677777742 12223468899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcc
Q 002623 421 EDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (899)
Q Consensus 421 ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~ 455 (899)
++..+|++..+.. .++.+++++++.++.+..
T Consensus 364 ~EireIi~iRa~e----e~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 364 EEIREIIRIRAKE----EDIELSDDALEYLTDIGE 394 (450)
T ss_pred HHHHHHHHHhhhh----hccccCHHHHHHHHhhch
Confidence 9999999987776 789999999999998864
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.40 E-value=1.4e-11 Score=129.22 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=117.3
Q ss_pred cCCCCCCc-CchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc
Q 002623 251 AGKLDPVI-GRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (899)
Q Consensus 251 ~~~l~~ii-G~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~ 327 (899)
+.+|++++ |........+..+.. ....+++|+||+|||||++|+++++.+... +..++.+++..+...
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~~-- 84 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLLA-- 84 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHHH--
Confidence 34677766 444444444444433 345689999999999999999999987442 567788876554311
Q ss_pred ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHH
Q 002623 328 YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 407 (899)
Q Consensus 328 ~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~ 407 (899)
+.. ...+.+|+|||+|.+.+.. ...+..++...-+++...+|.+++..+. ...+.+.+.
T Consensus 85 ------------~~~---~~~~~~liiDdi~~l~~~~----~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l~~~L~ 143 (227)
T PRK08903 85 ------------FDF---DPEAELYAVDDVERLDDAQ----QIALFNLFNRVRAHGQGALLVAGPAAPL--ALPLREDLR 143 (227)
T ss_pred ------------Hhh---cccCCEEEEeChhhcCchH----HHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCCCHHHH
Confidence 111 1234589999999875321 1122333333334555545555554331 123568899
Q ss_pred ccC---ceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHH
Q 002623 408 RRF---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDE 473 (899)
Q Consensus 408 ~Rf---~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~ 473 (899)
+|| ..|.+++|+.++...+++.+... .++.++++++..++..+.+ -+..+..+++.
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~----~~v~l~~~al~~L~~~~~g------n~~~l~~~l~~ 202 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAE----RGLQLADEVPDYLLTHFRR------DMPSLMALLDA 202 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccC------CHHHHHHHHHH
Confidence 887 37899999988888877766554 7899999999999886543 23455555554
No 273
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.39 E-value=5.3e-12 Score=144.11 Aligned_cols=184 Identities=14% Similarity=0.226 Sum_probs=118.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+..++||..+++.+.-++ .+.+ +++|.||||+|||++++.|+..+.... .-..++++.+. ++...
T Consensus 190 ~~~v~Gq~~~~~al~laa----~~G~-------~llliG~~GsGKTtLak~L~gllpp~~-g~e~le~~~i~---s~~g~ 254 (506)
T PRK09862 190 LSDVIGQEQGKRGLEITA----AGGH-------NLLLIGPPGTGKTMLASRINGLLPDLS-NEEALESAAIL---SLVNA 254 (506)
T ss_pred eEEEECcHHHHhhhheec----cCCc-------EEEEECCCCCcHHHHHHHHhccCCCCC-CcEEEecchhh---hhhcc
Confidence 356889987776654332 1222 699999999999999999998874321 11223333331 11111
Q ss_pred cC-----------CCCC---Cccccccc--chhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceee-
Q 002623 728 IG-----------APPG---YVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVS- 789 (899)
Q Consensus 728 ~g-----------~~~~---~~g~~~~~--~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~- 789 (899)
.. ++.. ..+.-.++ .-.+.+..+++++|||||++.+++.+++.|++.||+|.++... |....
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~ 334 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITY 334 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceec
Confidence 00 0000 00000011 2246788899999999999999999999999999999886544 44443
Q ss_pred eCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHH
Q 002623 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRD 855 (899)
Q Consensus 790 ~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e 855 (899)
..++.+|+|+|++.+.... + ..+.|......++ .+.++.++++|||.++.+++++.+
T Consensus 335 pa~f~lIAa~NP~pcG~~~----~-~~c~c~~~~~~~Y----~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 335 PARFQLVAAMNPSPTGHYQ----G-NHNRCTPEQTLRY----LNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCCEEEEEeecCccceecC----C-CCCCcCHHHHHHH----HhhCCHhHHhhccEEEEeCCCCHH
Confidence 4699999999997543211 1 1134444433344 578999999999999999988644
No 274
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=2.4e-12 Score=141.51 Aligned_cols=159 Identities=18% Similarity=0.330 Sum_probs=109.1
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
+++|+||+.+++.+...+...+. |+ .+||+||+|+|||++|+.+++.+++....-.+.|+.. +
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~----~h----a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~---------~ 65 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRF----SH----AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIE---------F 65 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCC----Cc----eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEE---------e
Confidence 46799999999999888753221 11 3899999999999999999998853211000000000 0
Q ss_pred cCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCCh
Q 002623 728 IGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (899)
Q Consensus 728 ~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~ 803 (899)
.......++.++.+.+.+.+.. ..+.|++||++|+++.+.+|.|+..||+ +..+++||++|+.
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~-- 132 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCEN-- 132 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCC--
Confidence 0000111222222233332222 3457999999999999999999999997 3457788887765
Q ss_pred hhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHH
Q 002623 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQV 865 (899)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l 865 (899)
...+.|.+.+|| +++.|.+++.+++...+...+
T Consensus 133 ----------------------------~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 ----------------------------LEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred ----------------------------hHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 457788999999 899999999999988776654
No 275
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=2.5e-11 Score=138.52 Aligned_cols=209 Identities=18% Similarity=0.213 Sum_probs=139.6
Q ss_pred CCCCcCchHHHHHHHHHhhc----CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc-----
Q 002623 254 LDPVIGRDDEIRRCIQILSR----RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~----~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 324 (899)
.+.++||+++++.+...+.. ..+.+++|+||||+|||++++.+++.+.... .+..++.+++.....
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHH
Confidence 35689999999998887633 3456799999999999999999999885432 257788888764321
Q ss_pred --------c--ccccc-hHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc---CCCeEEEEe
Q 002623 325 --------G--AKYRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGA 390 (899)
Q Consensus 325 --------~--~~~~g-~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~~I~a 390 (899)
+ ....| ...+.+..+.+.+...+.+.||+|||+|.+..... .+....|...++ ..++.+|++
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~----~~~l~~l~~~~~~~~~~~v~vI~i 179 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG----NDVLYSLLRAHEEYPGARIGVIGI 179 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC----chHHHHHHHhhhccCCCeEEEEEE
Confidence 1 01112 22333344444444444568999999999972211 122223333332 236888998
Q ss_pred cChhHHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHH
Q 002623 391 TTLDEYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468 (899)
Q Consensus 391 t~~~~~~~~~~~d~al~~Rf~--~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~ 468 (899)
+|...... .+++.+.+||. .|.|++++.+++.+|++..++. ......++++++..+++.+.+.. .-..+++
T Consensus 180 ~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~~---Gd~r~a~ 252 (394)
T PRK00411 180 SSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE--GFYPGVVDDEVLDLIADLTAREH---GDARVAI 252 (394)
T ss_pred ECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh--hcccCCCCHhHHHHHHHHHHHhc---CcHHHHH
Confidence 88765433 26888988884 6899999999999999877653 11244689999999988885421 2245778
Q ss_pred HHHHHHHHhh
Q 002623 469 DLVDEAAAKL 478 (899)
Q Consensus 469 ~lld~a~~~~ 478 (899)
+++..|+..+
T Consensus 253 ~ll~~a~~~a 262 (394)
T PRK00411 253 DLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHH
Confidence 8887776544
No 276
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.2e-11 Score=137.14 Aligned_cols=197 Identities=16% Similarity=0.215 Sum_probs=133.1
Q ss_pred HhcCCCCCCcCchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc---------c---------
Q 002623 249 ASAGKLDPVIGRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA---------L--------- 309 (899)
Q Consensus 249 ~~~~~l~~iiG~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~---------l--------- 309 (899)
.+|..+++++|++..++.+.+.+.+.+..| .||+||+|+||+++|.++|+.+.+...... +
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 367788999999999999999888877666 789999999999999999999987432110 0
Q ss_pred ------CCCeEEEEEcccccccccccc-hHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhh
Q 002623 310 ------MNRKLISLDMGALIAGAKYRG-EFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (899)
Q Consensus 310 ------~~~~~~~l~~~~l~~~~~~~g-~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (899)
....++.+....-..+.+... -..+.++.+...+.. .+++.|++|||+|.+. ....|.|+..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------~~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------ANAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------HHHHHHHHHH
Confidence 011223332111011100000 112335555544432 2457799999999997 7788899999
Q ss_pred hcCC--CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 380 LGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 380 l~~~--~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
+++. ...+|.+|+... .+.|.+++||+.|.|.+|+.++..+++... ....++..+..++.++.+
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~--------~~~~~~~~~~~l~~~s~G- 230 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAA--------GPDLPDDPRAALAALAEG- 230 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHh--------cccCCHHHHHHHHHHcCC-
Confidence 9864 566777776665 467999999999999999999988777542 222345555667777754
Q ss_pred cCCCCChhhHHHHHH
Q 002623 458 ISGRFLPDKAIDLVD 472 (899)
Q Consensus 458 i~~~~~p~~a~~lld 472 (899)
.|..+..+++
T Consensus 231 -----sp~~Al~ll~ 240 (365)
T PRK07471 231 -----SVGRALRLAG 240 (365)
T ss_pred -----CHHHHHHHhc
Confidence 4556666654
No 277
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.39 E-value=2.2e-12 Score=154.00 Aligned_cols=173 Identities=18% Similarity=0.270 Sum_probs=117.5
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC---------------------
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN--------------------- 705 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~--------------------- 705 (899)
.+..|+||+.++..+..+... |. +|++||.||+|||||++|++|++.+..
T Consensus 2 pf~~ivGq~~~~~al~~~av~-------~~--~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~ 72 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD-------PR--IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCE 72 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC-------CC--CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccCh
Confidence 456899999988777555421 21 246999999999999999999998820
Q ss_pred -----------CCCceEEeccccchhhhhhhhhcCCCCC----CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHH
Q 002623 706 -----------TEEALVRIDMSEYMEKHAVSRLIGAPPG----YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNV 770 (899)
Q Consensus 706 -----------~~~~~~~i~~~~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~ 770 (899)
...+|+.+.++.. ...++|...- ..|.. ..-.+.+..+.++|||||||+.+++.+|+.
T Consensus 73 ~~~~~~~~~~~~~~pfv~~p~~~t-----~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~ 145 (633)
T TIGR02442 73 ECRRKYRPSEQRPVPFVNLPLGAT-----EDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDV 145 (633)
T ss_pred hhhhcccccccCCCCeeeCCCCCc-----HHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHH
Confidence 1234444444321 2234443100 00100 011345556788999999999999999999
Q ss_pred HHHhhcCCeeecC-CCceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEe
Q 002623 771 FLQILDDGRVTDS-QGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIV 848 (899)
Q Consensus 771 Ll~~le~g~~~~~-~g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~ 848 (899)
|+++|++|.+... .|....+ .++++|+|+|+. .+.|+++|++||+..|.
T Consensus 146 Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~-----------------------------eg~l~~~L~dR~~l~i~ 196 (633)
T TIGR02442 146 LLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPE-----------------------------EGDLRPQLLDRFGLCVD 196 (633)
T ss_pred HHHHHhcCCEEEEECCceeeecCCeEEEEecCCC-----------------------------CCCCCHHHHhhcceEEE
Confidence 9999999965432 2444433 589999999972 34688999999998888
Q ss_pred cCCCC-HHHHHHHHHHH
Q 002623 849 FQPLD-RDQISSIVRLQ 864 (899)
Q Consensus 849 f~~l~-~e~i~~I~~~~ 864 (899)
++++. .++..+++.+.
T Consensus 197 v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 197 VAAPRDPEERVEIIRRR 213 (633)
T ss_pred ccCCCchHHHHHHHHHH
Confidence 88876 45555666543
No 278
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=2.1e-12 Score=142.48 Aligned_cols=166 Identities=19% Similarity=0.324 Sum_probs=111.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ceE-Eeccccchhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYMEKH 722 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~~~~ 722 (899)
+..++||+.++..+..++...+. |. .+||+||+|+|||++|+.+|+.+..... +.. ...|.....-.
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl-------~h-a~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKL-------HH-ALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCC-------Ce-eEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHH
Confidence 35799999999999998864321 11 3999999999999999999999965211 111 11111110000
Q ss_pred hh-------hhhcCCC--------CCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecC
Q 002623 723 AV-------SRLIGAP--------PGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDS 783 (899)
Q Consensus 723 ~~-------~~l~g~~--------~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~ 783 (899)
.+ ...+..+ ...++.++.+.+.+.+.. ..+.|++|||+|.+++..+|.||..||+
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------ 167 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------ 167 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc------
Confidence 00 0001111 011222333334444442 3467999999999999999999999997
Q ss_pred CCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 784 QGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 784 ~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
...+++||+.|+. ...+.|.+++|| ..+.|+||+.+++..++..
T Consensus 168 -----pp~~~~fiLit~~------------------------------~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 168 -----PPARALFILISHS------------------------------SGRLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred -----CCCCceEEEEECC------------------------------hhhccHHHHhhc-cEEEecCCCHHHHHHHHHH
Confidence 2345677777665 455679999999 8999999999999998886
No 279
>PRK08727 hypothetical protein; Validated
Probab=99.39 E-value=9.1e-12 Score=130.63 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=115.1
Q ss_pred CCCCCcCchH-HHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccch
Q 002623 253 KLDPVIGRDD-EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331 (899)
Q Consensus 253 ~l~~iiG~~~-~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~ 331 (899)
+|+++++... .+..+.........+.++|+||+|||||+|+.+++..+... +..++.+++..+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 5666665443 33333332223344568999999999999999999987542 4566666543322
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccC-
Q 002623 332 FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF- 410 (899)
Q Consensus 332 ~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf- 410 (899)
..+.+.++.... .-+|+|||++.+..... ......+++....+++ ..+|.|++..+. ....++|.+++||
T Consensus 82 --~~~~~~~~~l~~---~dlLiIDDi~~l~~~~~--~~~~lf~l~n~~~~~~-~~vI~ts~~~p~-~l~~~~~dL~SRl~ 152 (233)
T PRK08727 82 --GRLRDALEALEG---RSLVALDGLESIAGQRE--DEVALFDFHNRARAAG-ITLLYTARQMPD-GLALVLPDLRSRLA 152 (233)
T ss_pred --hhHHHHHHHHhc---CCEEEEeCcccccCChH--HHHHHHHHHHHHHHcC-CeEEEECCCChh-hhhhhhHHHHHHHh
Confidence 233444444432 33999999998874332 1123334444433444 456666654331 2224579999996
Q ss_pred --ceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 411 --QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 411 --~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
..+.+++|+.+++..|++..+.. .++.++++++.+++..+.|
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGER 196 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCC
Confidence 37899999999999999987766 5899999999999999864
No 280
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=2e-11 Score=140.91 Aligned_cols=186 Identities=17% Similarity=0.292 Sum_probs=120.9
Q ss_pred CCCCCc-CchH--HHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc
Q 002623 253 KLDPVI-GRDD--EIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (899)
Q Consensus 253 ~l~~ii-G~~~--~i~~~~~~l~~~--~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~ 327 (899)
+|++++ |... .+..+....... ..++++|+||||+|||+|++++++.+..... +..++.+++..+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-----~~~v~yi~~~~~~~~-- 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNP-----NAKVVYVTSEKFTND-- 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCC-----CCeEEEEEHHHHHHH--
Confidence 677744 5443 233333332221 2256889999999999999999999865321 677888887665421
Q ss_pred ccchHHH-HHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHH
Q 002623 328 YRGEFED-RLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 406 (899)
Q Consensus 328 ~~g~~~~-~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al 406 (899)
+...... ....+..... ..-+|+|||+|.+.+... ....+..++..+.+.+...+|+++..+.. ...+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~---~~dlLiiDDi~~l~~~~~--~~~~l~~~~n~l~~~~~~iiits~~~p~~--l~~l~~~l 265 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYR---SVDVLLIDDIQFLAGKER--TQEEFFHTFNALHEAGKQIVLTSDRPPKE--LPGLEERL 265 (450)
T ss_pred HHHHHHcCcHHHHHHHHh---cCCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCcEEEECCCCHHH--HHHHHHHH
Confidence 1111111 1122222222 244999999999864321 12345556666667776656655544432 11267999
Q ss_pred HccCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 407 ERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 407 ~~Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
.+||. .+.|.+|+.+++..|++..++. .++.+++++++.++..+.+
T Consensus 266 ~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 266 RSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred HhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCC
Confidence 99994 6899999999999999988876 6889999999999888754
No 281
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=9.9e-13 Score=145.82 Aligned_cols=168 Identities=15% Similarity=0.305 Sum_probs=111.7
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC-c---e----EEec-cccc
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-A---L----VRID-MSEY 718 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-~---~----~~i~-~~~~ 718 (899)
+.+|+||+.+++.|.+++...+... .+||+||+|+||+++|.++|+.++.... . + ..+. |...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~H--------A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHH--------AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCc--------eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC
Confidence 3579999999999998886533211 3999999999999999999999964321 0 0 0000 1111
Q ss_pred hh-------hhhhhhhcCC---CC-----CCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCe
Q 002623 719 ME-------KHAVSRLIGA---PP-----GYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGR 779 (899)
Q Consensus 719 ~~-------~~~~~~l~g~---~~-----~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~ 779 (899)
.. .|.....+.. .. ..++.++.+.+...+. ...+.|++|||+|.+++..+|.|+..+|+
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe-- 167 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE-- 167 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc--
Confidence 00 0000011110 00 1122222233333333 23457999999999999999999999997
Q ss_pred eecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHH
Q 002623 780 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 859 (899)
Q Consensus 780 ~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~ 859 (899)
...+++||++|+. ...+.|.+.+|| ..|.|+|++.+++.+
T Consensus 168 ---------pp~~~~~IL~t~~------------------------------~~~llpti~SRc-~~i~l~~l~~~~i~~ 207 (365)
T PRK07471 168 ---------PPARSLFLLVSHA------------------------------PARLLPTIRSRC-RKLRLRPLAPEDVID 207 (365)
T ss_pred ---------CCCCeEEEEEECC------------------------------chhchHHhhccc-eEEECCCCCHHHHHH
Confidence 3346778888776 445678899999 999999999999998
Q ss_pred HHHHHH
Q 002623 860 IVRLQV 865 (899)
Q Consensus 860 I~~~~l 865 (899)
++....
T Consensus 208 ~L~~~~ 213 (365)
T PRK07471 208 ALAAAG 213 (365)
T ss_pred HHHHhc
Confidence 887753
No 282
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=4.4e-12 Score=142.97 Aligned_cols=156 Identities=22% Similarity=0.378 Sum_probs=109.8
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC-------ce--EEeccccc
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE-------AL--VRIDMSEY 718 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~-------~~--~~i~~~~~ 718 (899)
+++++||+.+++.+...+... .. | .++||+||||+|||++|+++++.+...+. ++ +.++...
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~---~~-~----~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~- 86 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN---HL-A----QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS- 86 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC---CC-C----eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc-
Confidence 567999999999988887631 11 1 15999999999999999999999854211 11 1111111
Q ss_pred hhhhhhhhhcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEE
Q 002623 719 MEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (899)
Q Consensus 719 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 794 (899)
..+....+.+.+.+.. ..+.||+|||+|.++...++.|+..+++ ....++
T Consensus 87 ---------------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~~~~~ 140 (367)
T PRK14970 87 ---------------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PPAHAI 140 (367)
T ss_pred ---------------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CCCceE
Confidence 0111111122222221 2357999999999999999999999986 224577
Q ss_pred EEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 795 iI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
||++++. ...+.+++.+|| .++.|++++.+++..++...+.+.+
T Consensus 141 ~Il~~~~------------------------------~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 141 FILATTE------------------------------KHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred EEEEeCC------------------------------cccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC
Confidence 8887765 466778899999 7899999999999999888887654
No 283
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.38 E-value=1.7e-11 Score=128.63 Aligned_cols=189 Identities=16% Similarity=0.198 Sum_probs=121.0
Q ss_pred CCCCCCcC--chHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccccc
Q 002623 252 GKLDPVIG--RDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 329 (899)
Q Consensus 252 ~~l~~iiG--~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~ 329 (899)
.+|+++++ .+..++.+...+......+++|+||+|||||++|+++++.+... +.+++.++++.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~---- 80 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA---- 80 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh----
Confidence 35666662 33455555555445566789999999999999999999987432 567888888776421
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccC-HHHHc
Q 002623 330 GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKD-PALER 408 (899)
Q Consensus 330 g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d-~al~~ 408 (899)
...++.... ...+|+|||+|.+..... ....+..++....+.+. .+|.+++.... . .... +.+.+
T Consensus 81 ------~~~~~~~~~---~~~lLvIDdi~~l~~~~~--~~~~L~~~l~~~~~~~~-~iIits~~~~~-~-~~~~~~~L~~ 146 (226)
T TIGR03420 81 ------DPEVLEGLE---QADLVCLDDVEAIAGQPE--WQEALFHLYNRVREAGG-RLLIAGRAAPA-Q-LPLRLPDLRT 146 (226)
T ss_pred ------HHHHHhhcc---cCCEEEEeChhhhcCChH--HHHHHHHHHHHHHHcCC-eEEEECCCChH-H-CCcccHHHHH
Confidence 122333222 234999999999863210 01223333333333444 55555554331 1 1233 78888
Q ss_pred cCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHH
Q 002623 409 RFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (899)
Q Consensus 409 Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~ 475 (899)
||. .|.+++|+.+++..+++..+.+ .++.++++++..++..+.+ .+..+..+++.+.
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~g------n~r~L~~~l~~~~ 206 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSR------DMGSLMALLDALD 206 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccC------CHHHHHHHHHHHH
Confidence 873 6899999999999998876654 5788999999888876543 3456666666544
No 284
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=3.9e-12 Score=136.42 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHH------
Q 002623 262 DEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR------ 335 (899)
Q Consensus 262 ~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~------ 335 (899)
+.++.++..+. ..++++|.||||||||++++.+|..+ +.+++.++++..+......|...-.
T Consensus 52 ~~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~ 119 (327)
T TIGR01650 52 ATTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQ 119 (327)
T ss_pred HHHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeeccCCcc
Confidence 34455555553 35689999999999999999999999 9999999988766554444432110
Q ss_pred ----HHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC----------------CCeEEEEecChhH
Q 002623 336 ----LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR----------------GELRCIGATTLDE 395 (899)
Q Consensus 336 ----l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~----------------~~v~~I~at~~~~ 395 (899)
....+..+.. .+++|++||++... .++++.|..+|+. ..+++|+|+|+.+
T Consensus 120 ~~~f~~GpL~~A~~--~g~illlDEin~a~--------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g 189 (327)
T TIGR01650 120 ITEFRDGILPWALQ--HNVALCFDEYDAGR--------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIG 189 (327)
T ss_pred eeEEecCcchhHHh--CCeEEEechhhccC--------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCC
Confidence 1123333332 46789999999886 5677777777752 1578999999876
Q ss_pred -------HHhhhccCHHHHccCc-eEEecCCCHHHHHHHHHHHH
Q 002623 396 -------YRKYIEKDPALERRFQ-QVYVDQPNVEDTISILRGLR 431 (899)
Q Consensus 396 -------~~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il~~~~ 431 (899)
|.+...++.++++||. .+.+..|+.++-.+|+....
T Consensus 190 ~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 190 LGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 7778889999999997 56899999999888886543
No 285
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.6e-12 Score=134.14 Aligned_cols=177 Identities=22% Similarity=0.295 Sum_probs=120.2
Q ss_pred hccceeccchHHHHHHHHHHH----HHcCCCCC---CCCcceeEEeccCCCcHHHHHHHHHHHhc-C-----CCCceEEe
Q 002623 647 LHKRVVGQDPAVKSVAEAIQR----SRAGLSDP---HRPIASFMFMGPTGVGKTELAKALASYMF-N-----TEEALVRI 713 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~----~~~~~~~~---~~p~~~lLl~Gp~GtGKT~lA~~la~~l~-~-----~~~~~~~i 713 (899)
+|+.++--...++.+...+.. ...+.... -.. -+|++||||||||+|+++||+.+. + ....++.+
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NR--liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNR--LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeee--EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 455555556666666655432 22211110 111 389999999999999999999982 1 12345666
Q ss_pred ccccchhhhhhhhhcCCCCCCcccccccchhHHHhh-CCCeEEEEeCCCccCh---------------HHHHHHHHhhcC
Q 002623 714 DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR-RPYAVILFDEIEKAHS---------------DVFNVFLQILDD 777 (899)
Q Consensus 714 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~lDEid~l~~---------------~~~~~Ll~~le~ 777 (899)
|+..+ ++++|+.....+.. ....+.+.+.. ..--.++|||++.+.. .+.|+||+-||.
T Consensus 218 nshsL-----FSKWFsESgKlV~k-mF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 218 NSHSL-----FSKWFSESGKLVAK-MFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred ehhHH-----HHHHHhhhhhHHHH-HHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 66655 56677654333221 11223344442 2224678999998642 288999999986
Q ss_pred CeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHH
Q 002623 778 GRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI 857 (899)
Q Consensus 778 g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i 857 (899)
= -.++|+++++|+|. ...++-+|.+|-|.+..+.||+.+.+
T Consensus 292 l---------K~~~NvliL~TSNl------------------------------~~siD~AfVDRADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 292 L---------KRYPNVLILATSNL------------------------------TDSIDVAFVDRADIVFYVGPPTAEAI 332 (423)
T ss_pred h---------ccCCCEEEEeccch------------------------------HHHHHHHhhhHhhheeecCCccHHHH
Confidence 2 14579999999998 67788899999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 002623 858 SSIVRLQVSFSKV 870 (899)
Q Consensus 858 ~~I~~~~l~~~~~ 870 (899)
.+|++..+.++-.
T Consensus 333 ~~IlkscieEL~~ 345 (423)
T KOG0744|consen 333 YEILKSCIEELIS 345 (423)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 286
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.37 E-value=1.9e-12 Score=131.39 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=150.3
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHh---cCCCCceEEeccccchhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYM---FNTEEALVRIDMSEYMEKHA 723 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l---~~~~~~~~~i~~~~~~~~~~ 723 (899)
+.+.|.-...+.....+.|.+...... . ++||.||+|.||+.+|+.|.+.- ..-..+|+.+||..+.....
T Consensus 182 lksgiatrnp~fnrmieqierva~rsr---~---p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~a 255 (531)
T COG4650 182 LKSGIATRNPHFNRMIEQIERVAIRSR---A---PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTA 255 (531)
T ss_pred HHhcccccChHHHHHHHHHHHHHhhcc---C---CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchH
Confidence 344455555555666666655433222 2 39999999999999999998654 11256899999999999999
Q ss_pred hhhhcCCCCC-CcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC
Q 002623 724 VSRLIGAPPG-YVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (899)
Q Consensus 724 ~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~ 802 (899)
.+-+||+..| ++|..+.+ .+.++.+.++++|+|||..+..+-|..||+.+|+.++.......-..+++.+|+.|-.
T Consensus 256 msalfghvkgaftga~~~r--~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvr- 332 (531)
T COG4650 256 MSALFGHVKGAFTGARESR--EGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVR- 332 (531)
T ss_pred HHHHHhhhccccccchhhh--hhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHH-
Confidence 9999999876 55654433 3788899999999999999999999999999999876643322223356666665544
Q ss_pred hhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCC--HHHHHHHHHHHHHHHHhhcccCCCcc
Q 002623 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLD--RDQISSIVRLQVSFSKVSWIYSPWHF 879 (899)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~--~e~i~~I~~~~l~~~~~~~~~~~~~~ 879 (899)
++.+.|- .+.|+..++.||+. .+.+|.+. .+||+--++..|.+.....+. .+.|
T Consensus 333 -------------------dlrq~va---eg~fredl~arinlwtf~lpgl~qr~ediepnldyelerha~~~g~-~vrf 389 (531)
T COG4650 333 -------------------DLRQLVA---EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYELERHASLTGD-SVRF 389 (531)
T ss_pred -------------------HHHHHHh---ccchHHHHHHhhheeeeeccccccCccccCCCccHHHHHHHHhhCc-eeee
Confidence 3444443 78899999999954 45555554 688888888888888755444 4567
Q ss_pred CHHHHHHh
Q 002623 880 NYEMLVKF 887 (899)
Q Consensus 880 ~~~~l~~~ 887 (899)
+.++-..|
T Consensus 390 ntearra~ 397 (531)
T COG4650 390 NTEARRAW 397 (531)
T ss_pred ehHHHHHH
Confidence 77775444
No 287
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=9.5e-12 Score=145.60 Aligned_cols=215 Identities=9% Similarity=0.060 Sum_probs=141.1
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcCCC-----CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE-
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTK-----NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS- 316 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~~~-----~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~- 316 (899)
.+|.++++|..+++++|+++.++.+...+..... .-++|+||||+|||++++.++..+. ..+++
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~----------~~~~Ew 141 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG----------IQVQEW 141 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh----------hHHHHH
Confidence 5799999999999999999988888777654322 2289999999999999999999872 22111
Q ss_pred EE---cc----------cccccccccchHHHHHHHHHHHHHh---------hCCCeEEEEccchhhccCCCCCchHHHHH
Q 002623 317 LD---MG----------ALIAGAKYRGEFEDRLKAVLKEVTE---------SEGQIILFIDEIHTVVGAGATNGAMDAGN 374 (899)
Q Consensus 317 l~---~~----------~l~~~~~~~g~~~~~l~~l~~~~~~---------~~~~~IL~iDEi~~l~~~~~~~~~~~~~~ 374 (899)
++ +. .+...........+.++.++..+.. .....||||||++.++... .....+
T Consensus 142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq~ 217 (637)
T TIGR00602 142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALHE 217 (637)
T ss_pred hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHHH
Confidence 10 00 0000000001122234455554432 1346799999998776321 234566
Q ss_pred HHh-hhhcCCCeEEEEecChhHHH------hhhc----cCHHHHc--cCceEEecCCCHHHHHHHHHHHHHHHhhhh--C
Q 002623 375 LLK-PMLGRGELRCIGATTLDEYR------KYIE----KDPALER--RFQQVYVDQPNVEDTISILRGLRERYELHH--G 439 (899)
Q Consensus 375 ~L~-~~l~~~~v~~I~at~~~~~~------~~~~----~d~al~~--Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~--~ 439 (899)
+|+ .+.+.+.+.+|+++|...+. ..+. +.+++++ |+..|.|.+.+..++.+.|+.++..-.... .
T Consensus 218 lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 218 ILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred HHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 666 66778888888888855431 1122 4588987 666899999999999999988887632211 2
Q ss_pred CCC-CHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHh
Q 002623 440 VRI-SDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 440 ~~i-~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~ 477 (899)
..+ +++++..++..+.|-+ ..|+..|+.+|.+
T Consensus 298 ~~~p~~~~l~~I~~~s~GDi------RsAIn~LQf~~~~ 330 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDI------RSAINSLQFSSSK 330 (637)
T ss_pred cccCCHHHHHHHHHhCCChH------HHHHHHHHHHHhc
Confidence 223 5688888888777643 2678888877643
No 288
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.36 E-value=4e-11 Score=136.85 Aligned_cols=186 Identities=17% Similarity=0.297 Sum_probs=118.3
Q ss_pred CCCC-CcCchHH-HHHHHHHh-hcC--CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc
Q 002623 253 KLDP-VIGRDDE-IRRCIQIL-SRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (899)
Q Consensus 253 ~l~~-iiG~~~~-i~~~~~~l-~~~--~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~ 327 (899)
+|++ ++|.+.. ...+...+ ... ..++++|+||+|+|||+|++++++++.... .+..++.+++..+...
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~~~-- 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFTND-- 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHHHH--
Confidence 5777 4565553 22222222 222 224578999999999999999999986532 1577888887665321
Q ss_pred ccchHHH-HHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHH
Q 002623 328 YRGEFED-RLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPAL 406 (899)
Q Consensus 328 ~~g~~~~-~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al 406 (899)
+...... .+..+...+. ..-+|+|||+|.+.+... .......++....+.+...+|+++..+.. ...+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~---~~dlLiiDDi~~l~~~~~--~~~~l~~~~n~~~~~~~~iiits~~~p~~--l~~l~~~l 253 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYR---SVDLLLIDDIQFLAGKER--TQEEFFHTFNALHENGKQIVLTSDRPPKE--LPGLEERL 253 (405)
T ss_pred HHHHHHcCCHHHHHHHHH---hCCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCCEEEecCCCHHH--Hhhhhhhh
Confidence 1111100 1112222222 234999999998864321 11234555555556665555544443332 12367899
Q ss_pred HccCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 407 ERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 407 ~~Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
.+||. .+.|.+|+.+++..|++..++. .++.++++++..+++...+
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC
Confidence 99995 5899999999999999988877 6889999999999877654
No 289
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.36 E-value=3.6e-12 Score=139.28 Aligned_cols=180 Identities=18% Similarity=0.297 Sum_probs=115.2
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC-------------CCCceEEe
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------------TEEALVRI 713 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------------~~~~~~~i 713 (899)
.+..|+||++++..+..++.. |. +|+++|.|+||+|||+++++++..+.. ....+...
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------~~--~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------PK--IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCE 72 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------CC--CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccCh
Confidence 357799999999887665431 21 357999999999999999999988821 00011111
Q ss_pred ccccchhh-------------------hhhhhhcCCCCCCccccccc--chhHHHhhCCCeEEEEeCCCccChHHHHHHH
Q 002623 714 DMSEYMEK-------------------HAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVILFDEIEKAHSDVFNVFL 772 (899)
Q Consensus 714 ~~~~~~~~-------------------~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll 772 (899)
+|...... .+...++|...-......+. .-.+.+.++.+++||+||++.+++.+|+.|+
T Consensus 73 ~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll 152 (337)
T TIGR02030 73 EVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLL 152 (337)
T ss_pred HHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHH
Confidence 22211000 00012222210000000011 1123455677899999999999999999999
Q ss_pred HhhcCCeeec-CCCceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecC
Q 002623 773 QILDDGRVTD-SQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQ 850 (899)
Q Consensus 773 ~~le~g~~~~-~~g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~ 850 (899)
++|++|.++. ..|....+ .++++|+|+|+. .+.|+++|++||..++.+.
T Consensus 153 ~~l~~g~~~v~r~G~~~~~~~r~iviat~np~-----------------------------eg~l~~~LldRf~l~i~l~ 203 (337)
T TIGR02030 153 DVAASGWNVVEREGISIRHPARFVLVGSGNPE-----------------------------EGELRPQLLDRFGLHAEIR 203 (337)
T ss_pred HHHHhCCeEEEECCEEEEcCCCEEEEeccccc-----------------------------cCCCCHHHHhhcceEEECC
Confidence 9999986332 22444433 478889998871 3468999999999999999
Q ss_pred CCCH-HHHHHHHHHH
Q 002623 851 PLDR-DQISSIVRLQ 864 (899)
Q Consensus 851 ~l~~-e~i~~I~~~~ 864 (899)
+++. ++..+|++..
T Consensus 204 ~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 204 TVRDVELRVEIVERR 218 (337)
T ss_pred CCCCHHHHHHHHHhh
Confidence 8875 6667777664
No 290
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.36 E-value=3.8e-12 Score=139.24 Aligned_cols=183 Identities=20% Similarity=0.310 Sum_probs=127.9
Q ss_pred CCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccc
Q 002623 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g 330 (899)
.++.+||+++.++++++.+.. +...+|||.|++||||..+|++|++...+ ++.+|+.+||.++-..- ...
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R-------~~kPfV~~NCAAlPesL-lES 292 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR-------RDKPFVKLNCAALPESL-LES 292 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc-------cCCCceeeeccccchHH-HHH
Confidence 567899999999999987643 56678999999999999999999998744 47899999999873210 000
Q ss_pred hHHHHHHHHHHHHHh-------hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEEEe
Q 002623 331 EFEDRLKAVLKEVTE-------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 390 (899)
Q Consensus 331 ~~~~~l~~l~~~~~~-------~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I~a 390 (899)
+.....+..|..+.. ..+++.||+|||..|. ..+|.-|+++|.+| +|++|+|
T Consensus 293 ELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAA 364 (550)
T COG3604 293 ELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAA 364 (550)
T ss_pred HHhcccccccccchhccCcceeecCCCeEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEEEec
Confidence 111112222222221 1357899999999998 77888899998755 7899999
Q ss_pred cChhHHHhhhccCHHHHc----cCceEEecCCCHH----HHHHHHHHHHHHHhhhhC---CCCCHHHHHHHHHh
Q 002623 391 TTLDEYRKYIEKDPALER----RFQQVYVDQPNVE----DTISILRGLRERYELHHG---VRISDSALVEAAIL 453 (899)
Q Consensus 391 t~~~~~~~~~~~d~al~~----Rf~~i~~~~ps~e----e~~~Il~~~~~~~~~~~~---~~i~~~~l~~~~~l 453 (899)
||.+-.. . -.+..|+. |+..+++..|+.. ++.-+...+++++....+ +.++.++++.+..+
T Consensus 365 TNRDL~~-~-V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 365 TNRDLEE-M-VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred cchhHHH-H-HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 9987532 1 12344444 7777777777654 445555777777766554 46888888776443
No 291
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.35 E-value=1.3e-11 Score=136.71 Aligned_cols=169 Identities=22% Similarity=0.389 Sum_probs=116.1
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC--ceEEeccccchhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--~~~~i~~~~~~~~~~~~ 725 (899)
+++++|++.+++.+...+.. ...| +++|+||||||||++++++++.+++.+. .++.+++++......+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~-------~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 86 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKE-------KNMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIR 86 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhC-------CCCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHH
Confidence 35688999999998888752 1112 5999999999999999999999865432 34555444321111000
Q ss_pred hhcCCCCCCcccccccchhHHHh-----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecC
Q 002623 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (899)
Q Consensus 726 ~l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN 800 (899)
..+.+... ..+..+|+|||+|.++.+.++.|+..++.. ..++.+|+++|
T Consensus 87 ---------------~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-----------~~~~~lIl~~~ 140 (319)
T PRK00440 87 ---------------NKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQNTRFILSCN 140 (319)
T ss_pred ---------------HHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-----------CCCCeEEEEeC
Confidence 01111111 123469999999999999999999999862 23567888887
Q ss_pred CChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccC
Q 002623 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFN 880 (899)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~ 880 (899)
. ...+.+++.+|+ .++.|++++.+++..++...+.+.+ ..++
T Consensus 141 ~------------------------------~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-------~~i~ 182 (319)
T PRK00440 141 Y------------------------------SSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-------IEIT 182 (319)
T ss_pred C------------------------------ccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-------CCCC
Confidence 6 344556788999 6799999999999999998887654 3455
Q ss_pred HHHHHHhhc
Q 002623 881 YEMLVKFCY 889 (899)
Q Consensus 881 ~~~l~~~~~ 889 (899)
++++..+..
T Consensus 183 ~~al~~l~~ 191 (319)
T PRK00440 183 DDALEAIYY 191 (319)
T ss_pred HHHHHHHHH
Confidence 666544443
No 292
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=2.7e-12 Score=141.47 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=110.1
Q ss_pred ccceec-cchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC--ceEEeccc---cchhh
Q 002623 648 HKRVVG-QDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE--ALVRIDMS---EYMEK 721 (899)
Q Consensus 648 ~~~i~G-q~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~--~~~~i~~~---~~~~~ 721 (899)
|..|+| |+.+++.+...+...+. |+ .+||+||+|+||+++|+.+++.++..+. ....-.|. .+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l----~h----a~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~ 75 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRL----SH----AYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSG 75 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC----Cc----eEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcC
Confidence 456777 88899998888754221 11 3799999999999999999999854320 00001111 11100
Q ss_pred -hhhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEE
Q 002623 722 -HAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVII 796 (899)
Q Consensus 722 -~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 796 (899)
|....++......++.++.+.+.+.+. ...+.|++|||+|.++.+.+|+||+.||+ +..+++||
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~I 144 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAI 144 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEE
Confidence 000011111111122222233333333 23467999999999999999999999997 44578888
Q ss_pred EecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 797 MTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 797 ~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
++|+. ...+.|++++|| .++.|.+++.+++..++..
T Consensus 145 l~t~~------------------------------~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTEN------------------------------KHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCC------------------------------hHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 88876 568889999999 9999999999998776653
No 293
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.34 E-value=2.1e-11 Score=130.31 Aligned_cols=95 Identities=22% Similarity=0.163 Sum_probs=69.7
Q ss_pred CeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-CeEEEEecChh-------HHHhhhccCHHHHccCceEEecCCCH
Q 002623 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLD-------EYRKYIEKDPALERRFQQVYVDQPNV 420 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~~I~at~~~-------~~~~~~~~d~al~~Rf~~i~~~~ps~ 420 (899)
|+||||||+|.|. .+++.+|.++++.. ...+|.|||.. ++.....++..|++|+-.|...+++.
T Consensus 279 pGVLFIDEvHmLD--------iEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHMLD--------IECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGSB--------HHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhcc--------HHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 7899999999997 89999999999865 56778888842 22233467789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcc
Q 002623 421 EDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (899)
Q Consensus 421 ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~ 455 (899)
+|..+|++..++. .++.+++++++.+.+++.
T Consensus 351 ~ei~~Il~iR~~~----E~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 351 EEIKQILKIRAKE----EDVEISEDALDLLTKIGV 381 (398)
T ss_dssp HHHHHHHHHHHHH----CT--B-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh----hcCcCCHHHHHHHHHHhh
Confidence 9999999988887 899999999999988764
No 294
>PRK06620 hypothetical protein; Validated
Probab=99.34 E-value=1.2e-11 Score=127.56 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=99.4
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEcc
Q 002623 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 356 (899)
Q Consensus 277 ~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDE 356 (899)
++++|+||||+|||+|++++++.. +..++. .. ... .. ... ...+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~~~----~~-----~~~------~~----~~~--~~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NAYIIK----DI-----FFN------EE----ILE--KYNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CCEEcc----hh-----hhc------hh----HHh--cCCEEEEec
Confidence 458999999999999999988765 332221 00 000 01 111 124899999
Q ss_pred chhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccCc---eEEecCCCHHHHHHHHHHHHHH
Q 002623 357 IHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ---QVYVDQPNVEDTISILRGLRER 433 (899)
Q Consensus 357 i~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf~---~i~~~~ps~ee~~~Il~~~~~~ 433 (899)
||.+. ......++..+.+.|...+|++++.+.+ +.+ |.|++||. .+.+.+|+.+++..+++..+..
T Consensus 94 i~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~~---l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 94 IENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSRN---FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cccch-------HHHHHHHHHHHHhcCCEEEEEcCCCccc---cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 99552 1345666677778899888888888874 456 99999997 7899999999999888877765
Q ss_pred HhhhhCCCCCHHHHHHHHHhccc
Q 002623 434 YELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 434 ~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
.++.++++++++++..+.+
T Consensus 163 ----~~l~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 163 ----SSVTISRQIIDFLLVNLPR 181 (214)
T ss_pred ----cCCCCCHHHHHHHHHHccC
Confidence 5889999999999998865
No 295
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=1.3e-11 Score=127.83 Aligned_cols=187 Identities=17% Similarity=0.272 Sum_probs=112.7
Q ss_pred CCCCCCc-Cch-HHHHHHHHHhhcCCC---CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc
Q 002623 252 GKLDPVI-GRD-DEIRRCIQILSRRTK---NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (899)
Q Consensus 252 ~~l~~ii-G~~-~~i~~~~~~l~~~~~---~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~ 326 (899)
.+|+.+| |.. ...-.....+...+. ++++|+||+|+|||+|.+++++++.... .+..++.++...+...
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~~- 78 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIRE- 78 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHHH-
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHHH-
Confidence 3677775 542 233333333333322 4578999999999999999999985422 2678889887665421
Q ss_pred cccchHH-HHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHH
Q 002623 327 KYRGEFE-DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPA 405 (899)
Q Consensus 327 ~~~g~~~-~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~a 405 (899)
+..... ..+..+.+.... .-+|+||++|.+.+... .......++..+.++|..++|.+...+.. ...+++.
T Consensus 79 -~~~~~~~~~~~~~~~~~~~---~DlL~iDDi~~l~~~~~--~q~~lf~l~n~~~~~~k~li~ts~~~P~~--l~~~~~~ 150 (219)
T PF00308_consen 79 -FADALRDGEIEEFKDRLRS---ADLLIIDDIQFLAGKQR--TQEELFHLFNRLIESGKQLILTSDRPPSE--LSGLLPD 150 (219)
T ss_dssp -HHHHHHTTSHHHHHHHHCT---SSEEEEETGGGGTTHHH--HHHHHHHHHHHHHHTTSEEEEEESS-TTT--TTTS-HH
T ss_pred -HHHHHHcccchhhhhhhhc---CCEEEEecchhhcCchH--HHHHHHHHHHHHHhhCCeEEEEeCCCCcc--ccccChh
Confidence 100000 112233333332 23999999999863311 11344556666667777655555444332 2246899
Q ss_pred HHccCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 406 LERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 406 l~~Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
|.+||. .+.+.+|+.+++..|++..+.. .++.++++++..++....+
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTS
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcC
Confidence 999995 6899999999999999988887 8889999999999888754
No 296
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.33 E-value=1.9e-11 Score=142.56 Aligned_cols=199 Identities=12% Similarity=0.119 Sum_probs=124.1
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcC----CCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEe--
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI-- 713 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~----~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i-- 713 (899)
+..+.+.+...++|++.++..+.-++--.... ...-++. .|+||+|+||||||++|+++++.+.+ ..|+..
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~-~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~~~~ 270 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD-INILLLGDPGTAKSQLLKYVEKTAPR--AVYTTGKG 270 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCcccccc-ceEEEeCCCChhHHHHHHHHHHHcCc--ceEcCCCC
Confidence 34556677788999998877776655321000 0001112 27999999999999999999998732 223321
Q ss_pred -ccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-
Q 002623 714 -DMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF- 790 (899)
Q Consensus 714 -~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~- 790 (899)
++..+... .+..+ ..|.. ..-.+.+..+.+|+++|||++++++..|..|+++|+++.++... |.....
T Consensus 271 ~~~~~l~~~-----~~~~~--~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~ 341 (509)
T smart00350 271 SSAVGLTAA-----VTRDP--ETREF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLN 341 (509)
T ss_pred CCcCCcccc-----ceEcc--CcceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEec
Confidence 22112110 00000 00100 01123445677899999999999999999999999999876543 544444
Q ss_pred CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceE-EecCCCCHHHHHHHHHHHHHH
Q 002623 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 791 ~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~-i~f~~l~~e~i~~I~~~~l~~ 867 (899)
.++.+|+|+|+....+.. . ..+.+ .-.|+|++++|||.+ +...+++.+.-.+|+++.+..
T Consensus 342 ~~~~viAa~NP~~g~y~~-------~----~~~~~------n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 342 ARCSVLAAANPIGGRYDP-------K----LTPEE------NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CCcEEEEEeCCCCcccCC-------C----cChhh------ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 589999999984321110 0 00000 226899999999996 555677777777888877654
No 297
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.33 E-value=1.5e-11 Score=124.90 Aligned_cols=142 Identities=22% Similarity=0.337 Sum_probs=92.8
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCC----Cce-EEeccccchhh-hhhhhhcCCCCCCcccccccchhHHHhh----C
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTE----EAL-VRIDMSEYMEK-HAVSRLIGAPPGYVGYEEGGQLTEVVRR----R 750 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~----~~~-~~i~~~~~~~~-~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~ 750 (899)
.+||+||+|+|||++|+.+++.+.... .++ ...+|..+... +.....+....+..+.+..+.+.+.+.. .
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 95 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQES 95 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCcccC
Confidence 499999999999999999999985421 111 01111111100 0000011111111222222223334333 3
Q ss_pred CCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHH
Q 002623 751 PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDA 830 (899)
Q Consensus 751 ~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (899)
.+.|++|||+|.+.++.++.|+..||+ ...++.||+++|.
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~----------------------------- 135 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPS----------------------------- 135 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECC-----------------------------
Confidence 457999999999999999999999987 2346778888775
Q ss_pred HHhcCChHHHhccceEEecCCCCHHHHHHHHHHH
Q 002623 831 ARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 831 ~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
...+.+++.+|+ .++.|.|++.+++..++...
T Consensus 136 -~~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 136 -PEKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred -hHhChHHHHhhc-EEeeCCCCCHHHHHHHHHHc
Confidence 356778899999 79999999999998888765
No 298
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.33 E-value=1.9e-11 Score=133.41 Aligned_cols=228 Identities=18% Similarity=0.216 Sum_probs=146.0
Q ss_pred cHHHHHhcC-CCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEE-------
Q 002623 244 DLTAMASAG-KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI------- 315 (899)
Q Consensus 244 ~l~~~~~~~-~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~------- 315 (899)
+|+++.++- .|..+|||++..+.++..+..+...++||.||+|||||++|+.+++.+....+.+ +++|.
T Consensus 5 ~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~---~~pf~~~p~~p~ 81 (350)
T CHL00081 5 NLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVK---DDPFNSHPSDPE 81 (350)
T ss_pred chhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccC---CCCCCCCCCChh
Confidence 344444433 6788999999988888888888888999999999999999999999986533211 11111
Q ss_pred ---------------------EEEcccccccccccchHHHHH------HHHHHHH--------HhhCCCeEEEEccchhh
Q 002623 316 ---------------------SLDMGALIAGAKYRGEFEDRL------KAVLKEV--------TESEGQIILFIDEIHTV 360 (899)
Q Consensus 316 ---------------------~l~~~~l~~~~~~~g~~~~~l------~~l~~~~--------~~~~~~~IL~iDEi~~l 360 (899)
.+.+..+- .|..++++ ...+... .....+++|||||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-----~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLP-----LGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecC-----CCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 00000000 01111111 1111100 01234679999999999
Q ss_pred ccCCCCCchHHHHHHHhhhhcCC---------------CeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCC-HHHH
Q 002623 361 VGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPN-VEDT 423 (899)
Q Consensus 361 ~~~~~~~~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps-~ee~ 423 (899)
. ...+..|..+|+.+ ++++|++.|+.+. .+.+++..||. .|.+..|+ .+++
T Consensus 157 ~--------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg----~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 D--------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred C--------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC----CCCHHHHHHhCceeecCCCCChHHH
Confidence 8 66777888887653 4566777776652 58899999998 78999997 5888
Q ss_pred HHHHHHHHH----------HH---------------hhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhh
Q 002623 424 ISILRGLRE----------RY---------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 424 ~~Il~~~~~----------~~---------------~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~ 478 (899)
.+|++.... .| .....+.+++..+.++++++...- ..-|.-.+.++..|.+.+
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~--~~s~Ra~i~l~raArA~A 302 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELD--VDGLRGDIVTNRAAKALA 302 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHH
Confidence 888865321 00 011257788888888888876532 224666667776666665
Q ss_pred hhh--ccCCchhHHHHH
Q 002623 479 KME--ITSKPTALDEIN 493 (899)
Q Consensus 479 ~~~--~~~~~~~l~~~~ 493 (899)
.++ ....|.++...-
T Consensus 303 al~GR~~V~pdDv~~~a 319 (350)
T CHL00081 303 AFEGRTEVTPKDIFKVI 319 (350)
T ss_pred HHcCCCCCCHHHHHHHH
Confidence 543 445666665543
No 299
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=5.5e-11 Score=135.50 Aligned_cols=199 Identities=17% Similarity=0.208 Sum_probs=123.5
Q ss_pred CCCCCCc-CchHHHH-HHHHHhhc-------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc
Q 002623 252 GKLDPVI-GRDDEIR-RCIQILSR-------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL 322 (899)
Q Consensus 252 ~~l~~ii-G~~~~i~-~~~~~l~~-------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 322 (899)
.+|+.++ |....+- .....+.. ...++++|+||+|+|||+|++++++.+... +..++.++...+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHH
Confidence 3667765 6554421 23333322 123568999999999999999999998542 567788876554
Q ss_pred cccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhcc
Q 002623 323 IAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEK 402 (899)
Q Consensus 323 ~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~ 402 (899)
... +...+...-...|..... ..-+|+|||+|.+.+.... ..+...++....+++...++++++.+.. +..+
T Consensus 181 ~~~--~~~~l~~~~~~~f~~~~~--~~dvLiIDDiq~l~~k~~~--qeelf~l~N~l~~~~k~IIlts~~~p~~--l~~l 252 (445)
T PRK12422 181 TEH--LVSAIRSGEMQRFRQFYR--NVDALFIEDIEVFSGKGAT--QEEFFHTFNSLHTEGKLIVISSTCAPQD--LKAM 252 (445)
T ss_pred HHH--HHHHHhcchHHHHHHHcc--cCCEEEEcchhhhcCChhh--HHHHHHHHHHHHHCCCcEEEecCCCHHH--Hhhh
Confidence 311 111111000112222222 2349999999998643221 2344455555555666555555443322 1246
Q ss_pred CHHHHccCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHH
Q 002623 403 DPALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAA 475 (899)
Q Consensus 403 d~al~~Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~ 475 (899)
++.+.+||. .+.+.+|+.+++..||+..++. .++.++++++.+++....+-+ ......+...+
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~di------r~L~g~l~~l~ 318 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSSNV------KSLLHALTLLA 318 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHH
Confidence 899999994 6899999999999999988876 678999999999988765422 14455555554
No 300
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.32 E-value=3.7e-11 Score=130.24 Aligned_cols=210 Identities=16% Similarity=0.209 Sum_probs=130.7
Q ss_pred ceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC----CCCceEEecc----ccchhh
Q 002623 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN----TEEALVRIDM----SEYMEK 721 (899)
Q Consensus 650 ~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~----~~~~~~~i~~----~~~~~~ 721 (899)
+++|+++++..+...++.+..|... .+. .++|+||||+|||++|++|++.+.. ...++..+.. +.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~-~r~--il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~ 128 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEE-RKQ--ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHED 128 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCC-CCc--EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccC
Confidence 7999999999999999888776553 333 3899999999999999999998822 1225555443 221110
Q ss_pred h----------------hh------------------hhhcCC----------------------CCCCc---------c
Q 002623 722 H----------------AV------------------SRLIGA----------------------PPGYV---------G 736 (899)
Q Consensus 722 ~----------------~~------------------~~l~g~----------------------~~~~~---------g 736 (899)
. .+ ..+-|. .|+.. |
T Consensus 129 Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~G 208 (361)
T smart00763 129 PLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELTG 208 (361)
T ss_pred CcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHhc
Confidence 0 00 000010 01100 0
Q ss_pred -----------cccccc--hhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCCh
Q 002623 737 -----------YEEGGQ--LTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (899)
Q Consensus 737 -----------~~~~~~--l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~ 803 (899)
..+... +.+.+.++..||+-|+|+.+++.++++.||.++++|.+....+.....-+.+||++||..
T Consensus 209 ~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~- 287 (361)
T smart00763 209 KVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNES- 287 (361)
T ss_pred ccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHH-
Confidence 000000 113445556699999999999999999999999999887653222233466899999981
Q ss_pred hhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC-HHHHHHHHHHHHHHHHhhcccCCCccCHH
Q 002623 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQVSFSKVSWIYSPWHFNYE 882 (899)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~-~e~i~~I~~~~l~~~~~~~~~~~~~~~~~ 882 (899)
.+..+ ..+....+|++|| .+|.++.+. .++=.+|.++.+..-. ....++.+.
T Consensus 288 -e~~~~---------------------~~~k~~eaf~dR~-~~i~vpY~l~~~~E~~Iy~k~~~~s~----~~~~~~aP~ 340 (361)
T smart00763 288 -EWQRF---------------------KSNKKNEALLDRI-IKVKVPYCLRVSEEAQIYEKLLRNSD----LTEAHIAPH 340 (361)
T ss_pred -HHhhh---------------------hccccchhhhhce-EEEeCCCcCCHHHHHHHHHHHhccCc----CcccccCch
Confidence 11110 0234468999999 577777765 4555678887776432 123556666
Q ss_pred HHHHhhcc
Q 002623 883 MLVKFCYL 890 (899)
Q Consensus 883 ~l~~~~~~ 890 (899)
.+..++..
T Consensus 341 ~le~aa~~ 348 (361)
T smart00763 341 TLEMAALF 348 (361)
T ss_pred HHHHHHHH
Confidence 65544443
No 301
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1e-10 Score=129.65 Aligned_cols=210 Identities=20% Similarity=0.253 Sum_probs=147.7
Q ss_pred CCCcCchHHHHHHHHHh----hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc----
Q 002623 255 DPVIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 326 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l----~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---- 326 (899)
+.+.+|+.+++++...| ....+.|++++|+||||||++++.+++++.... .+..++.+||..+....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHHH
Confidence 44889999999988766 345667899999999999999999999996532 13338889977653211
Q ss_pred ---------cccc-hHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChh
Q 002623 327 ---------KYRG-EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 394 (899)
Q Consensus 327 ---------~~~g-~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~ 394 (899)
...| ...+.++.+.+.........|+++||++.|....+ +..--|.++... .++.+|+.+|..
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccH
Confidence 1222 12223344445554456678999999999986543 222222233332 356788888888
Q ss_pred HHHhhhccCHHHHccCc--eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHH
Q 002623 395 EYRKYIEKDPALERRFQ--QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 395 ~~~~~~~~d~al~~Rf~--~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld 472 (899)
.+.. .++|.+.++|. .|.|++++.+|+..|++.-.+.- ...-.+++.++..++..+..... =-.+|++++.
T Consensus 167 ~~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~G---DAR~aidilr 239 (366)
T COG1474 167 KFLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESG---DARKAIDILR 239 (366)
T ss_pred HHHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCc---cHHHHHHHHH
Confidence 7744 46899999986 68899999999999998777742 24556889999888887765442 2338999999
Q ss_pred HHHHhhhhh
Q 002623 473 EAAAKLKME 481 (899)
Q Consensus 473 ~a~~~~~~~ 481 (899)
.|+..+..+
T Consensus 240 ~A~eiAe~~ 248 (366)
T COG1474 240 RAGEIAERE 248 (366)
T ss_pred HHHHHHHhh
Confidence 988766543
No 302
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.2e-11 Score=123.64 Aligned_cols=170 Identities=21% Similarity=0.289 Sum_probs=118.9
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHH-HHHHHHHHH---hhCCCe
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR-LKAVLKEVT---ESEGQI 350 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~-l~~l~~~~~---~~~~~~ 350 (899)
.++|+||+||+|+|||.||+.||+.+ +.||.--|+..+... .|+|+-.+. +.+++..+. .....+
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTEA-GYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTEA-GYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhhc-cccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 46899999999999999999999999 999999999988754 489864443 444444332 123467
Q ss_pred EEEEccchhhccCCCCC------chHHHHHHHhhhhcC-----------------------CCeEEEEecChhHH-----
Q 002623 351 ILFIDEIHTVVGAGATN------GAMDAGNLLKPMLGR-----------------------GELRCIGATTLDEY----- 396 (899)
Q Consensus 351 IL~iDEi~~l~~~~~~~------~~~~~~~~L~~~l~~-----------------------~~v~~I~at~~~~~----- 396 (899)
|+||||||.+.....+. ....++..|+.+++. .++.+|+..-....
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 99999999998655332 334567788888752 14444443321100
Q ss_pred ----------------------------------HhhhccCHHHHccCc-eEEecCCCHHHHHHHH----HHHHHHHhhh
Q 002623 397 ----------------------------------RKYIEKDPALERRFQ-QVYVDQPNVEDTISIL----RGLRERYELH 437 (899)
Q Consensus 397 ----------------------------------~~~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il----~~~~~~~~~~ 437 (899)
--.|.+-|.|.-|+. ...+.+.+.+.+.+|| ..+.++|...
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 011345588888998 4588888999999999 4566666643
Q ss_pred h-----CCCCCHHHHHHHHHhcc
Q 002623 438 H-----GVRISDSALVEAAILSD 455 (899)
Q Consensus 438 ~-----~~~i~~~~l~~~~~ls~ 455 (899)
. .+.++++++.++++.+-
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A~ 347 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKAI 347 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHHH
Confidence 3 34688999988887763
No 303
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=3.1e-11 Score=138.01 Aligned_cols=187 Identities=16% Similarity=0.248 Sum_probs=118.6
Q ss_pred CCCCCc-CchHH--HHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccc
Q 002623 253 KLDPVI-GRDDE--IRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY 328 (899)
Q Consensus 253 ~l~~ii-G~~~~--i~~~~~~l~~~~-~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~ 328 (899)
+|++++ |.... ...+.+...... .++++|+||||+|||+|++++++.+.... .+..++.+++..+....
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-----~~~~v~yi~~~~f~~~~-- 175 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFLNDL-- 175 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHHH--
Confidence 567766 54432 233333332222 35789999999999999999999985432 15678888876643211
Q ss_pred cchH-HHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHH
Q 002623 329 RGEF-EDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALE 407 (899)
Q Consensus 329 ~g~~-~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~ 407 (899)
.... ...+..+..... ..+-+|+|||++.+.+.... ......++..+.+.+...+|++...+..- -.+.+.+.
T Consensus 176 ~~~~~~~~~~~f~~~~~--~~~dvLlIDDi~~l~~~~~~--q~elf~~~n~l~~~~k~iIitsd~~p~~l--~~l~~rL~ 249 (440)
T PRK14088 176 VDSMKEGKLNEFREKYR--KKVDVLLIDDVQFLIGKTGV--QTELFHTFNELHDSGKQIVICSDREPQKL--SEFQDRLV 249 (440)
T ss_pred HHHHhcccHHHHHHHHH--hcCCEEEEechhhhcCcHHH--HHHHHHHHHHHHHcCCeEEEECCCCHHHH--HHHHHHHh
Confidence 0000 001112222221 13459999999988643211 13445556666666665555443333321 23568899
Q ss_pred ccCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 408 RRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 408 ~Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
+||. .+.|.+|+.+.+..|++..++. .++.++++++..+++.+.+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDD 297 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhcccc
Confidence 9996 6899999999999999988775 6889999999999888754
No 304
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.6e-11 Score=133.27 Aligned_cols=162 Identities=15% Similarity=0.287 Sum_probs=112.0
Q ss_pred eeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch------h-hhh
Q 002623 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------E-KHA 723 (899)
Q Consensus 651 i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~------~-~~~ 723 (899)
..++....+.+..++...+... .+||+||+|+||+++|+.+|+.+...+..- .-.|+... . .|.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~H--------A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHH--------ALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcce--------eEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCC
Confidence 4566777778877776433221 399999999999999999999995432100 01222221 0 111
Q ss_pred hhhhcCC-CCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEe
Q 002623 724 VSRLIGA-PPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (899)
Q Consensus 724 ~~~l~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 798 (899)
....+.. ....++.++.+.+.+.+.. ..+.|++||++|+|+...+|+||+.||+ +..+++||++
T Consensus 75 D~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~ 143 (325)
T PRK06871 75 DFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQ 143 (325)
T ss_pred CEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 1111111 1113444444555555543 3468999999999999999999999998 5568899999
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
|+. ...+.|.++||| +.+.|+|++.+++.+.+..
T Consensus 144 t~~------------------------------~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 144 ADL------------------------------SAALLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred ECC------------------------------hHhCchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 887 678889999999 9999999999998876655
No 305
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.30 E-value=8e-11 Score=129.51 Aligned_cols=178 Identities=20% Similarity=0.239 Sum_probs=119.4
Q ss_pred CcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc--------
Q 002623 257 VIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA-------- 326 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~-------- 326 (899)
+||.+..++++.+.+.+ ....++||+|++||||+++|++|+..... .+.+|+.+||+.+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChHHHHHHHhcc
Confidence 57888888888887755 44568999999999999999999987532 36799999998763210
Q ss_pred ---cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEEEe
Q 002623 327 ---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 390 (899)
Q Consensus 327 ---~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I~a 390 (899)
.+.|....+ ..++. ...+++||||||+.|. .+.+..|..+++.+ ++++|++
T Consensus 74 ~~g~~~ga~~~~-~G~~~----~a~gGtL~Ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 74 EAGAFTGAQKRH-QGRFE----RADGGTLFLDELATAS--------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred ccccccCccccc-CCchh----hCCCCEEEeCChHhCC--------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 001110000 01122 2346799999999998 77888888888654 4799999
Q ss_pred cChhHHH--hhhccCHHHHccCceEEecCCCHH----HHHHHHHHHHHHHhhhhC----CCCCHHHHHHHHHhc
Q 002623 391 TTLDEYR--KYIEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHHG----VRISDSALVEAAILS 454 (899)
Q Consensus 391 t~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~e----e~~~Il~~~~~~~~~~~~----~~i~~~~l~~~~~ls 454 (899)
|+.+... ..-...+.|..||..+.|..|+.. ++..+++.++.++...++ ..++++++..+....
T Consensus 141 t~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred chhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 9876421 111235778889976666666654 455555666666554433 468999987775543
No 306
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=6.7e-11 Score=130.12 Aligned_cols=175 Identities=15% Similarity=0.203 Sum_probs=121.7
Q ss_pred CCCCCcCchHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccch
Q 002623 253 KLDPVIGRDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE 331 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~ 331 (899)
.|++++|++..++.+...+......|. ||+||+|+|||++|+.+++.+.+...... ...++.+... .|...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~~i--- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKKSI--- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCCCC---
Confidence 478899999999999998877666666 89999999999999999999866432211 1223333221 11111
Q ss_pred HHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhccCHHH
Q 002623 332 FEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPAL 406 (899)
Q Consensus 332 ~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~d~al 406 (899)
..+.++.+.+.+.. .++.-|++||++|.+. ..++|.|+..+++. +..+|.+|+... .+-|.+
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 12235555554432 2345699999999997 67889999999864 456666665443 678999
Q ss_pred HccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 407 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 407 ~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
++||+.+.|.+|+.++....+..... .++++.+..++.++.+
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 99999999999999987766653221 3566777767766643
No 307
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.30 E-value=2.9e-11 Score=122.49 Aligned_cols=148 Identities=17% Similarity=0.324 Sum_probs=118.2
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhh-------hh--hhcCCCCCCcccccccchhHHHh---
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHA-------VS--RLIGAPPGYVGYEEGGQLTEVVR--- 748 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~-------~~--~l~g~~~~~~g~~~~~~l~~~~~--- 748 (899)
|++||||+|+||.+.+.+|-+.++|.+.+-..++..++..... ++ ..+.-.|+..|+.+.-.+.+.++
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 7999999999999999999999999888777777777654321 11 11223456666655434444443
Q ss_pred ---------hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcch
Q 002623 749 ---------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETA 819 (899)
Q Consensus 749 ---------~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~ 819 (899)
+.++.|++|.|+|++..+.|.+|.+.||. ...++++|+.+|.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns------------------ 166 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNS------------------ 166 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecC------------------
Confidence 23578999999999999999999999996 4568999999998
Q ss_pred HHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHh
Q 002623 820 YETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKV 870 (899)
Q Consensus 820 ~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~ 870 (899)
...+-+++.+|| ..|.++.++.+|+-.++...+.+.+.
T Consensus 167 ------------~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 167 ------------TSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred ------------cccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 567788999999 99999999999999999999987763
No 308
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.29 E-value=3.4e-11 Score=134.52 Aligned_cols=182 Identities=19% Similarity=0.291 Sum_probs=129.2
Q ss_pred CCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc-----
Q 002623 252 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA----- 324 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----- 324 (899)
....++||+++.++++.+.+.+ ....+|||.|++||||..+|++|++...+ .+.||+.+||.++..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R-------~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR-------AKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc-------cCCCceeeecccCCHHHHHH
Confidence 3567899999998888887754 45578999999999999999999998643 367999999998631
Q ss_pred ---c---ccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------Ce
Q 002623 325 ---G---AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 385 (899)
Q Consensus 325 ---~---~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 385 (899)
| ..|.|....+. ..|+. ..++.||||||..+. .++|.-|+++|+.+ +|
T Consensus 211 ELFGhekGAFTGA~~~r~-G~fE~----A~GGTLfLDEI~~mp--------l~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 211 ELFGHEKGAFTGAITRRI-GRFEQ----ANGGTLFLDEIGEMP--------LELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred HhhcccccCcCCcccccC-cceeE----cCCceEEeeccccCC--------HHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 1 11333322221 12222 357799999999998 88898999999754 78
Q ss_pred EEEEecChhHHHhh--hccCHHHHccCceEEecCCCHH----HHHHHHHHHHHHHhhhhC---CCCCHHHHHHHHHh
Q 002623 386 RCIGATTLDEYRKY--IEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHHG---VRISDSALVEAAIL 453 (899)
Q Consensus 386 ~~I~at~~~~~~~~--~~~d~al~~Rf~~i~~~~ps~e----e~~~Il~~~~~~~~~~~~---~~i~~~~l~~~~~l 453 (899)
+||+|||.+-...- -..-..|.-|+..+.+..|+.. ++.-+++.+++++....+ ..++++++..+..+
T Consensus 278 RiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 278 RIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred EEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 99999998753210 0123455569998888888764 555556777777666554 46888888776444
No 309
>PRK09087 hypothetical protein; Validated
Probab=99.29 E-value=4.5e-11 Score=124.34 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=111.9
Q ss_pred CCCCCcC-c-hHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccc
Q 002623 253 KLDPVIG-R-DDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG 330 (899)
Q Consensus 253 ~l~~iiG-~-~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g 330 (899)
+|++++. . ....-.+++.+.....+.++|+||+|+|||+|++++++.. +..++ +...+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~~i--~~~~~~------- 79 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DALLI--HPNEIG------- 79 (226)
T ss_pred ChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCEEe--cHHHcc-------
Confidence 5666663 3 3333334443322222347999999999999999998765 44333 222111
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccC
Q 002623 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 410 (899)
Q Consensus 331 ~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf 410 (899)
...+..+. ..+|+|||++.+... ......++..+.++|...+|++++.+.+-. ...|.+++||
T Consensus 80 ------~~~~~~~~----~~~l~iDDi~~~~~~-----~~~lf~l~n~~~~~g~~ilits~~~p~~~~--~~~~dL~SRl 142 (226)
T PRK09087 80 ------SDAANAAA----EGPVLIEDIDAGGFD-----ETGLFHLINSVRQAGTSLLMTSRLWPSSWN--VKLPDLKSRL 142 (226)
T ss_pred ------hHHHHhhh----cCeEEEECCCCCCCC-----HHHHHHHHHHHHhCCCeEEEECCCChHHhc--cccccHHHHH
Confidence 11122221 137889999976311 245677777777888888888877776522 1268999999
Q ss_pred ---ceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 411 ---QQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 411 ---~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
..+.+.+|+.+++.+|++..++. .++.++++++.++++.+.+
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhh
Confidence 57899999999999999988877 6899999999999998864
No 310
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=8.9e-11 Score=135.53 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=110.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHH-HHHHHHHHHHhhCCCeEEEEc
Q 002623 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFED-RLKAVLKEVTESEGQIILFID 355 (899)
Q Consensus 277 ~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~-~l~~l~~~~~~~~~~~IL~iD 355 (899)
++++|+|++|+|||+|++++++++.... .+..++.+++..+... +...... .+..+..... ..-+|+||
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~e--l~~al~~~~~~~f~~~y~---~~DLLlID 384 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTNE--FINSIRDGKGDSFRRRYR---EMDILLVD 384 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHHH--HHHHHHhccHHHHHHHhh---cCCEEEEe
Confidence 4588999999999999999999985421 2678888887665422 2111111 1112222222 23499999
Q ss_pred cchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccCc---eEEecCCCHHHHHHHHHHHHH
Q 002623 356 EIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ---QVYVDQPNVEDTISILRGLRE 432 (899)
Q Consensus 356 Ei~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf~---~i~~~~ps~ee~~~Il~~~~~ 432 (899)
||+.+.+... ....+++++..+.+++.-++| |++..+. ....+++.|.+||. .+.|..|+.+.+..||+..+.
T Consensus 385 DIq~l~gke~--tqeeLF~l~N~l~e~gk~III-TSd~~P~-eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 385 DIQFLEDKES--TQEEFFHTFNTLHNANKQIVL-SSDRPPK-QLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred hhccccCCHH--HHHHHHHHHHHHHhcCCCEEE-ecCCChH-hhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 9998864332 124566667666666654444 4444321 12246899999995 579999999999999998877
Q ss_pred HHhhhhCCCCCHHHHHHHHHhccc
Q 002623 433 RYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 433 ~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
. .++.++++++.+++....+
T Consensus 461 ~----r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 461 Q----EQLNAPPEVLEFIASRISR 480 (617)
T ss_pred h----cCCCCCHHHHHHHHHhccC
Confidence 6 6899999999999887654
No 311
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.29 E-value=4.6e-11 Score=132.79 Aligned_cols=164 Identities=21% Similarity=0.386 Sum_probs=110.9
Q ss_pred cceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhc
Q 002623 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (899)
+++++.+..++.+...+.. + .+++|+||||||||++|+.+|..+.+. ..+.++++-.+....+...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~---~--------~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI---K--------KNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhc---C--------CCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHHh
Confidence 3467777777777666642 1 159999999999999999999998542 344566666666666666666
Q ss_pred -CCCCCCcccccc-cchhHHHh---hC--CCeEEEEeCCCccChH-HHHHHHHhhcCCe------ee----cCCCcee-e
Q 002623 729 -GAPPGYVGYEEG-GQLTEVVR---RR--PYAVILFDEIEKAHSD-VFNVFLQILDDGR------VT----DSQGRTV-S 789 (899)
Q Consensus 729 -g~~~~~~g~~~~-~~l~~~~~---~~--~~~vl~lDEid~l~~~-~~~~Ll~~le~g~------~~----~~~g~~~-~ 789 (899)
|..+..+|+... +.+..++. .. .+.|||||||++.+.+ ++..++++||.+. +. ...+..+ .
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 666777776543 33333332 22 3579999999999965 6889999998641 11 1112222 2
Q ss_pred eCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCC
Q 002623 790 FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 851 (899)
Q Consensus 790 ~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~ 851 (899)
..|+.||+|+|..... ...++++|++|| ..|.+.|
T Consensus 323 P~Nl~IIgTMNt~Drs--------------------------~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 323 PENVYIIGLMNTADRS--------------------------LAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred CCCeEEEEecCccccc--------------------------hhhccHHHHhhh-heEEecC
Confidence 3699999999982210 235899999999 6666655
No 312
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=1.7e-11 Score=134.52 Aligned_cols=204 Identities=21% Similarity=0.296 Sum_probs=134.5
Q ss_pred cCCCCCCcCchHHHHHHHHHhhcCC--CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc-
Q 002623 251 AGKLDPVIGRDDEIRRCIQILSRRT--KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK- 327 (899)
Q Consensus 251 ~~~l~~iiG~~~~i~~~~~~l~~~~--~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~- 327 (899)
...++++||.+..++++++.+++-. ..++|+.|++||||+.+|+.|+....+. .+.+|+.+||+.+.....
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~ 147 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQE 147 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHH
Confidence 3456789999999999999987743 3689999999999999999999443221 378999999998743321
Q ss_pred ----------ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------C
Q 002623 328 ----------YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (899)
Q Consensus 328 ----------~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 384 (899)
|.|....+ ..+|+. ..+++||+|||+.|. ...+..|.+++++| +
T Consensus 148 ~eLFG~~kGaftGa~~~k-~Glfe~----A~GGtLfLDEI~~LP--------~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 148 AELFGHEKGAFTGAQGGK-AGLFEQ----ANGGTLFLDEIHRLP--------PEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred HHHhccccceeecccCCc-Cchhee----cCCCEEehhhhhhCC--------HhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 22211111 123332 356799999999998 66788899999865 7
Q ss_pred eEEEEecChhHHHhhhccCHHHHccCceEEecCCCHH----HHHHHHHHHHHHHhhhhCCCCC---HHHHHHHHHhcccc
Q 002623 385 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHHGVRIS---DSALVEAAILSDRY 457 (899)
Q Consensus 385 v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~e----e~~~Il~~~~~~~~~~~~~~i~---~~~l~~~~~ls~~~ 457 (899)
|++|+|||.+.-.....- ..|.+|...+.|..|+.. |+..++..++..+....+..+. ++++..+....
T Consensus 215 VRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~--- 290 (403)
T COG1221 215 VRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYD--- 290 (403)
T ss_pred ceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC---
Confidence 889999998765433311 367776666677777665 4455556777766655555433 35555543332
Q ss_pred cCCCCChhhHHHHHHHHHHhhh
Q 002623 458 ISGRFLPDKAIDLVDEAAAKLK 479 (899)
Q Consensus 458 i~~~~~p~~a~~lld~a~~~~~ 479 (899)
.++ .-.....++..+|....
T Consensus 291 ~pG--NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 291 WPG--NIRELKNLVERAVAQAS 310 (403)
T ss_pred CCC--cHHHHHHHHHHHHHHhc
Confidence 111 11244556666666553
No 313
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.2e-11 Score=132.67 Aligned_cols=128 Identities=19% Similarity=0.402 Sum_probs=99.5
Q ss_pred eEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCC
Q 002623 682 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 761 (899)
Q Consensus 682 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid 761 (899)
+|||||||||||++..|+|+.+ +....-++.+++....+..+++-.. .+.+||+|++||
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~dLr~LL~~t------------------~~kSIivIEDID 296 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSDLRHLLLAT------------------PNKSILLIEDID 296 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHHHHHHHHhC------------------CCCcEEEEeecc
Confidence 9999999999999999999999 7777778887776655444443322 234699999999
Q ss_pred ccC------------------hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHH
Q 002623 762 KAH------------------SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETI 823 (899)
Q Consensus 762 ~l~------------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~ 823 (899)
..- .-.+..||.++|. --... | ..-|||+|||.
T Consensus 297 cs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG-lwSsc-g-----~ERIivFTTNh---------------------- 347 (457)
T KOG0743|consen 297 CSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG-LWSSC-G-----DERIIVFTTNH---------------------- 347 (457)
T ss_pred cccccccccccccccccCCcceeehHHhhhhhcc-ccccC-C-----CceEEEEecCC----------------------
Confidence 751 1246779999874 21111 1 13588999999
Q ss_pred HHHHHHHHHhcCChHHHh--ccceEEecCCCCHHHHHHHHHHHHHH
Q 002623 824 KQRVMDAARSIFRPEFMN--RVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 824 ~~~~~~~~~~~~~p~ll~--R~d~~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
.++|+|+|++ |+|.+|.+..-+.+++..++.++|.-
T Consensus 348 --------~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 348 --------KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred --------hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 8999999995 99999999999999999999998864
No 314
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.2e-11 Score=147.52 Aligned_cols=193 Identities=22% Similarity=0.306 Sum_probs=134.2
Q ss_pred ccceeccchHHHHHHHHHHHH--------HcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 648 HKRVVGQDPAVKSVAEAIQRS--------RAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~--------~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
|+.|.|.+..+..+.+.+..- ..++.+|+ .+||+||||||||.+|+++|..+...+.. +.+.+..-.
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr----gvL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkga 338 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR----GVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKGA 338 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc----ceeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcCc
Confidence 678999999999999988432 22344343 39999999999999999999988443322 222222211
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHHHHHHHHhhcCCeeecCCCcee
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
.-.++++|.... .-+.+++..++..++|+||||||-++ .++...||.+|+.- +
T Consensus 339 --D~lskwvgEaER-----qlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl---d------ 402 (1080)
T KOG0732|consen 339 --DCLSKWVGEAER-----QLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL---D------ 402 (1080)
T ss_pred --hhhccccCcHHH-----HHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC---C------
Confidence 112344443321 12467888888899999999999544 45788899998851 1
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVS 866 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~ 866 (899)
..+.+++|.+||. ...++|+++ +|||..+.|+.++.++..+|+...=.
T Consensus 403 sRgqVvvigATnR------------------------------pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtr 452 (1080)
T KOG0732|consen 403 SRGQVVVIGATNR------------------------------PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTR 452 (1080)
T ss_pred CCCceEEEcccCC------------------------------ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhcc
Confidence 2357999999999 677888885 89999999999999998888876433
Q ss_pred H--------HHhhcccCCCccCHHHHHHhhccc
Q 002623 867 F--------SKVSWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 867 ~--------~~~~~~~~~~~~~~~~l~~~~~~~ 891 (899)
+ +...+.....++-.+.|..+|..+
T Consensus 453 kw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 453 KWEPPISRELLLWLAEETSGYGGADLKALCTEA 485 (1080)
T ss_pred CCCCCCCHHHHHHHHHhccccchHHHHHHHHHH
Confidence 2 222333444555566688888754
No 315
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.3e-11 Score=132.48 Aligned_cols=134 Identities=22% Similarity=0.290 Sum_probs=97.9
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEE
Q 002623 273 RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIIL 352 (899)
Q Consensus 273 ~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL 352 (899)
++.+++.|||||||||||+++.|+|+.| +..++-+++++..... .+++++.... ...||
T Consensus 232 kawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydLeLt~v~~n~--------dLr~LL~~t~---~kSIi 290 (457)
T KOG0743|consen 232 KAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDLELTEVKLDS--------DLRHLLLATP---NKSIL 290 (457)
T ss_pred cchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEeeeccccCcH--------HHHHHHHhCC---CCcEE
Confidence 3556899999999999999999999999 9999999987765332 2777776653 46799
Q ss_pred EEccchhhccCCCCC-----chH-----HHHHHHhhhhc------CCCeEEEEecChhHHHhhhccCHHHHc--cCc-eE
Q 002623 353 FIDEIHTVVGAGATN-----GAM-----DAGNLLKPMLG------RGELRCIGATTLDEYRKYIEKDPALER--RFQ-QV 413 (899)
Q Consensus 353 ~iDEi~~l~~~~~~~-----~~~-----~~~~~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i 413 (899)
+|.+||.-+.-.... +.. -...=|+..++ .+.-++|.|||..+ .+||||.| |.+ .|
T Consensus 291 vIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 291 LIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDMHI 365 (457)
T ss_pred EEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-----hcCHhhcCCCcceeEE
Confidence 999999876422211 111 11122333333 12667899999998 89999999 998 89
Q ss_pred EecCCCHHHHHHHHHHHHH
Q 002623 414 YVDQPNVEDTISILRGLRE 432 (899)
Q Consensus 414 ~~~~ps~ee~~~Il~~~~~ 432 (899)
++...+.+....++..++.
T Consensus 366 ~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred EcCCCCHHHHHHHHHHhcC
Confidence 9999999986666555543
No 316
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.29 E-value=2.6e-11 Score=127.08 Aligned_cols=149 Identities=11% Similarity=0.196 Sum_probs=105.4
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||+|||||++|+++++.+...+.+++.++|+.+.... .. +...+.. .++|+|||+
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~~----------------~~~~~~~--~~lLvIDdi 99 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--PE----------------VLEGLEQ--ADLVCLDDV 99 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--HH----------------HHhhccc--CCEEEEeCh
Confidence 599999999999999999999987666789999998875321 01 1111122 259999999
Q ss_pred CccChH--HHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChH
Q 002623 761 EKAHSD--VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (899)
Q Consensus 761 d~l~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 838 (899)
+.++.. .++.|..+++... ..+..+|+|++.....+ ....+.
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~~--------------------------~~~~~~ 143 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL--------------------------PLRLPD 143 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHHC--------------------------CcccHH
Confidence 999874 4888888876411 01235777877633211 122367
Q ss_pred HHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhccccc
Q 002623 839 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 839 ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 893 (899)
+.+|+. ..|.++||+.+++..+++.++.+. ...++++++..++.. |.
T Consensus 144 L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~-------~~~~~~~~l~~L~~~-~~ 192 (226)
T TIGR03420 144 LRTRLAWGLVFQLPPLSDEEKIAALQSRAARR-------GLQLPDEVADYLLRH-GS 192 (226)
T ss_pred HHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHh-cc
Confidence 888884 589999999999999987766533 356888888877773 65
No 317
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=1.1e-11 Score=134.34 Aligned_cols=163 Identities=16% Similarity=0.218 Sum_probs=110.0
Q ss_pred ceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecccc--ch--hhhhhh
Q 002623 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE--YM--EKHAVS 725 (899)
Q Consensus 650 ~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~--~~--~~~~~~ 725 (899)
-..++..+.+.+..++...+. |+ .+||+||+|+||+++|.++|+.+...+.. ..-+|.. .. ..|...
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl----~H----A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~-~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL----GH----GLLICGPEGLGKRAVALALAEHVLASGPD-PAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc----ce----eEeeECCCCCCHHHHHHHHHHHHhCCCCC-CCCcchHHHHHhcCCCCCE
Confidence 356778888888877754322 11 39999999999999999999999653311 0001111 11 111111
Q ss_pred hhcCCCCCC--------cccccccchhHHHhhC----CCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCE
Q 002623 726 RLIGAPPGY--------VGYEEGGQLTEVVRRR----PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNT 793 (899)
Q Consensus 726 ~l~g~~~~~--------~g~~~~~~l~~~~~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 793 (899)
.++...|.. ++.+..+.+.+.+... .+.|++||++|+|+....|+||+.||+ +..++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGR 144 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCC
Confidence 222111111 2223333444444433 357999999999999999999999998 44688
Q ss_pred EEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 794 iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
+||++|+. ...+.|.++||| .++.|++++.+++...+..
T Consensus 145 ~fiL~~~~------------------------------~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 145 YLWLISAQ------------------------------PARLPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred eEEEEECC------------------------------hhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 88888887 577889999999 9999999999888776654
No 318
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.28 E-value=3.9e-11 Score=142.78 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=128.2
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHc-----CC--------CCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC-
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRA-----GL--------SDPHRPIASFMFMGPTGVGKTELAKALASYMFN- 705 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~-----~~--------~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~- 705 (899)
+..+.+.+...|.|++.+++.|.-++--... +. ..-++. .|+||+|+||||||.+|+++++...+
T Consensus 441 ~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgd-ihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 441 YRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGI-INVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCC-ceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 3445566778899999999888766632210 00 011222 38999999999999999999997643
Q ss_pred ---CCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeec
Q 002623 706 ---TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTD 782 (899)
Q Consensus 706 ---~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~ 782 (899)
.+.++..++|...... .+...|... .-.+++..+.+|+++|||++++++..|..|+++|+++.++.
T Consensus 520 ~ytsG~~~s~vgLTa~~~~------~d~~tG~~~-----le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI 588 (915)
T PTZ00111 520 IYTSGKSSSSVGLTASIKF------NESDNGRAM-----IQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTI 588 (915)
T ss_pred ccCCCCCCccccccchhhh------cccccCccc-----ccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEE
Confidence 2356666666554210 111011000 11234556778999999999999999999999999998765
Q ss_pred CC-Cceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceE-EecCCCCHHHHHH
Q 002623 783 SQ-GRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRDQISS 859 (899)
Q Consensus 783 ~~-g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~-i~f~~l~~e~i~~ 859 (899)
.. |..... .++.||+|+|+-...+.. . ..+.+ .-.|+|++++|||.+ +.++.++.+.=..
T Consensus 589 ~KaGi~~tL~ar~rVIAAaNP~~gryd~-------~----~s~~e------ni~Lp~~LLSRFDLIf~l~D~~d~~~D~~ 651 (915)
T PTZ00111 589 AKAGIVATLKAETAILASCNPINSRYNK-------N----KAVIE------NINISPSLFTRFDLIYLVLDHIDQDTDQL 651 (915)
T ss_pred ecCCcceecCCCeEEEEEcCCcccccCc-------c----cCccc------ccCCChHHhhhhcEEEEecCCCChHHHHH
Confidence 43 544444 589999999994322211 0 00000 235889999999996 5566666554456
Q ss_pred HHHHHHH
Q 002623 860 IVRLQVS 866 (899)
Q Consensus 860 I~~~~l~ 866 (899)
|..+.++
T Consensus 652 lA~hI~~ 658 (915)
T PTZ00111 652 ISLSIAK 658 (915)
T ss_pred HHHHHHH
Confidence 6666554
No 319
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=2.4e-10 Score=130.83 Aligned_cols=189 Identities=11% Similarity=0.118 Sum_probs=118.1
Q ss_pred CCCCCCc-CchHH--HHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc
Q 002623 252 GKLDPVI-GRDDE--IRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA 326 (899)
Q Consensus 252 ~~l~~ii-G~~~~--i~~~~~~l~~~--~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~ 326 (899)
.+|+.++ |.... +..+....... ..++++|+|++|+|||+|++++++.+.... .+..++.+++..+...
T Consensus 112 ~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~~- 185 (450)
T PRK14087 112 NTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFARK- 185 (450)
T ss_pred cchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHHH-
Confidence 4677766 44332 32232332222 225678999999999999999999885432 2678888887665422
Q ss_pred cccchHH---HHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccC
Q 002623 327 KYRGEFE---DRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKD 403 (899)
Q Consensus 327 ~~~g~~~---~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d 403 (899)
+...+. ..+..+.... ...-+|+|||++.+.+... .......++....+.+.. +|.+++..+. ..-.++
T Consensus 186 -~~~~l~~~~~~~~~~~~~~---~~~dvLiIDDiq~l~~k~~--~~e~lf~l~N~~~~~~k~-iIltsd~~P~-~l~~l~ 257 (450)
T PRK14087 186 -AVDILQKTHKEIEQFKNEI---CQNDVLIIDDVQFLSYKEK--TNEIFFTIFNNFIENDKQ-LFFSSDKSPE-LLNGFD 257 (450)
T ss_pred -HHHHHHHhhhHHHHHHHHh---ccCCEEEEeccccccCCHH--HHHHHHHHHHHHHHcCCc-EEEECCCCHH-HHhhcc
Confidence 111111 1121222222 2234999999998863321 123455556666666664 4555444331 112468
Q ss_pred HHHHccCc---eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 404 PALERRFQ---QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 404 ~al~~Rf~---~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
+.|.+||. .+.+.+|+.+++.+|++..++... ..+.++++++.+++..+.+
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~g 311 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSD 311 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCC
Confidence 99999995 689999999999999998887621 1136999999999998865
No 320
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.28 E-value=7.7e-12 Score=123.31 Aligned_cols=163 Identities=18% Similarity=0.263 Sum_probs=112.3
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC--CCceEEeccccchhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~ 725 (899)
..+|+|.++.+..+....+ .|.. | |++|.||||||||+.+.+||+.+.+. ...+..+|.|+-.....+.
T Consensus 26 l~dIVGNe~tv~rl~via~---~gnm----P--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK---EGNM----P--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH---cCCC----C--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 4679999999988876643 3322 2 69999999999999999999999763 3445666666543322221
Q ss_pred hhcCCCCCCcccccccchhHHHh--hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCCh
Q 002623 726 RLIGAPPGYVGYEEGGQLTEVVR--RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGS 803 (899)
Q Consensus 726 ~l~g~~~~~~g~~~~~~l~~~~~--~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~ 803 (899)
.-+.. -....+. ...+.|++|||+|++....|.+|.+.||- +.+.++|.++||.
T Consensus 97 n~IK~-----------FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS~ttRFalaCN~-- 152 (333)
T KOG0991|consen 97 NKIKM-----------FAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YSNTTRFALACNQ-- 152 (333)
T ss_pred HHHHH-----------HHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hcccchhhhhhcc--
Confidence 10000 0000011 13356999999999999999999999984 4456899999998
Q ss_pred hhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhc
Q 002623 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 872 (899)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~ 872 (899)
...+-.++-+|| .++.|..++..++.+-+....+.....|
T Consensus 153 ----------------------------s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~y 192 (333)
T KOG0991|consen 153 ----------------------------SEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNY 192 (333)
T ss_pred ----------------------------hhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCC
Confidence 444555678999 8899999998877665555555444433
No 321
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.5e-12 Score=127.93 Aligned_cols=154 Identities=22% Similarity=0.403 Sum_probs=107.8
Q ss_pred ccceeccchHHHHHHHHHHH--------HHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch
Q 002623 648 HKRVVGQDPAVKSVAEAIQR--------SRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM 719 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~--------~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~ 719 (899)
++.+.|.-..+..+.+.+.. .+.|++.| . .++||||||+|||.+|++++..+ +.+|+.+..+++.
T Consensus 131 ~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~P---k-g~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv 203 (388)
T KOG0651|consen 131 FENVGGLFYQIRELREVIELPLTNPELFLRVGIKPP---K-GLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALV 203 (388)
T ss_pred HHHhCChHHHHHHHHhheEeeccCchhccccCCCCC---c-eeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhh
Confidence 56677777777777776632 12344433 3 49999999999999999999999 8889988888874
Q ss_pred hhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCcc-----------ChHHHHHHHHhhcCCeeecCCCcee
Q 002623 720 EKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKA-----------HSDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 720 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l-----------~~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
+ ..+|.+...+ +..+...+...+||+|+||||.. +..+|..|+.+++.-.-.|
T Consensus 204 ~-----kyiGEsaRlI-----Remf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------ 267 (388)
T KOG0651|consen 204 D-----KYIGESARLI-----RDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------ 267 (388)
T ss_pred h-----hhcccHHHHH-----HHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------
Confidence 3 3444433211 22233444556799999999964 3568888888887422112
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDR 854 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~ 854 (899)
...++-+|+|+|. ...++|+|+ +|+|..+..|-+..
T Consensus 268 ~l~rVk~ImatNr------------------------------pdtLdpaLlRpGRldrk~~iPlpne 305 (388)
T KOG0651|consen 268 TLHRVKTIMATNR------------------------------PDTLDPALLRPGRLDRKVEIPLPNE 305 (388)
T ss_pred hcccccEEEecCC------------------------------ccccchhhcCCccccceeccCCcch
Confidence 2357889999999 667788888 78888887775553
No 322
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.1e-10 Score=127.15 Aligned_cols=194 Identities=16% Similarity=0.189 Sum_probs=127.5
Q ss_pred CCCCCcCchHHHHHHHHHhhcCC-CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCe--------EEEEEccccc
Q 002623 253 KLDPVIGRDDEIRRCIQILSRRT-KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRK--------LISLDMGALI 323 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~~~-~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~--------~~~l~~~~l~ 323 (899)
.|++++|++..++.+...+...+ +...||+||+|+||+++|.++|+.+.+.........++ ++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 46789999999999998886665 46779999999999999999999998754222111122 2333221111
Q ss_pred cccc-------ccc--------hHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-C
Q 002623 324 AGAK-------YRG--------EFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-E 384 (899)
Q Consensus 324 ~~~~-------~~g--------~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~ 384 (899)
.|.. ..| -..+.++++...+.. .++.-|++||++|.+. ..+.|.|+..||+. +
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~--------~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN--------EAAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC--------HHHHHHHHHHHhCCCC
Confidence 1110 000 011234555544442 2456799999999997 67888999999844 4
Q ss_pred eEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCCh
Q 002623 385 LRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLP 464 (899)
Q Consensus 385 v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p 464 (899)
.++|..|+..+ .+-|.+++||+.+.|++|+.++..++|...... ... +.....++.++.+ -|
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~~---~~~~~~l~~~a~G------s~ 215 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EIL---NINFPELLALAQG------SP 215 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----ccc---hhHHHHHHHHcCC------CH
Confidence 56677776654 678999999999999999999998888754321 111 1123455566643 46
Q ss_pred hhHHHHHH
Q 002623 465 DKAIDLVD 472 (899)
Q Consensus 465 ~~a~~lld 472 (899)
.+|+.+++
T Consensus 216 ~~al~~l~ 223 (314)
T PRK07399 216 GAAIANIE 223 (314)
T ss_pred HHHHHHHH
Confidence 66666664
No 323
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.27 E-value=3e-11 Score=142.60 Aligned_cols=155 Identities=22% Similarity=0.280 Sum_probs=108.9
Q ss_pred cceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCccccccc--chhHHHhhCCCeEEE
Q 002623 679 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVIL 756 (899)
Q Consensus 679 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~ 756 (899)
+|++||.|+||||||++|++|++.+.. ..+|+.+.++.. ...++|...-+.....+. .-.+.+.++++++||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t-----~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVT-----EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccc-----hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 778999999999999999999998743 347888876322 234444321000000000 112344567789999
Q ss_pred EeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhc
Q 002623 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 834 (899)
Q Consensus 757 lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (899)
+|||+.+++.+|+.|+++|++|.++... |..... .++.+|+|+|+.. . .+.
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e----~-----------------------~g~ 142 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE----G-----------------------GGG 142 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc----c-----------------------cCC
Confidence 9999999999999999999999865433 544444 5899999999831 0 357
Q ss_pred CChHHHhccceEEecCCCC-HHHHHHHHHHHHH
Q 002623 835 FRPEFMNRVDEYIVFQPLD-RDQISSIVRLQVS 866 (899)
Q Consensus 835 ~~p~ll~R~d~~i~f~~l~-~e~i~~I~~~~l~ 866 (899)
|+++|++||+.+|.+.++. .++..+|++..+.
T Consensus 143 L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 143 LPDHLLDRLALHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCHHHHHhccCeeecCCCCCHHHHHHHHHHHHH
Confidence 8999999999887776654 4555677777653
No 324
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.27 E-value=4.8e-11 Score=129.41 Aligned_cols=181 Identities=21% Similarity=0.306 Sum_probs=121.6
Q ss_pred HhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecc----ccchh
Q 002623 645 EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM----SEYME 720 (899)
Q Consensus 645 ~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~----~~~~~ 720 (899)
.+++.-++||+..+..|.... ....++.+|+.|+.|+|||+++|+|+..|.. --+.++| .-...
T Consensus 13 ~~pf~aivGqd~lk~aL~l~a---------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~---~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNA---------VDPQIGGALIAGEKGTAKSTLARALADLLPE---IEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhh---------cccccceeEEecCCCccHHHHHHHHHHhCCc---cceecCCCCCCCCCCh
Confidence 356788999998877765431 1223457999999999999999999999931 1111222 11100
Q ss_pred ---------h----hhh------hhhcCCCCC-----Cccc-------ccc--cchhHHHhhCCCeEEEEeCCCccChHH
Q 002623 721 ---------K----HAV------SRLIGAPPG-----YVGY-------EEG--GQLTEVVRRRPYAVILFDEIEKAHSDV 767 (899)
Q Consensus 721 ---------~----~~~------~~l~g~~~~-----~~g~-------~~~--~~l~~~~~~~~~~vl~lDEid~l~~~~ 767 (899)
+ .++ ..+++.|-+ -+|. ..+ ..-.+.+.+++.|||++||+..++..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~l 160 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHL 160 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHH
Confidence 0 000 011111111 1110 000 011355667788999999999999999
Q ss_pred HHHHHHhhcCCe-eecCCCceeeeC-CEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce
Q 002623 768 FNVFLQILDDGR-VTDSQGRTVSFT-NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE 845 (899)
Q Consensus 768 ~~~Ll~~le~g~-~~~~~g~~~~~~-~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~ 845 (899)
++.||+++++|. .....|..+.++ ++++|+|+|+. .+.++|.|+.||..
T Consensus 161 vd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-----------------------------eGeLrpqLlDRfg~ 211 (423)
T COG1239 161 VDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-----------------------------EGELRPQLLDRFGL 211 (423)
T ss_pred HHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc-----------------------------ccccchhhHhhhcc
Confidence 999999999984 333458888775 99999999992 57889999999999
Q ss_pred EEecCCCC-HHHHHHHHHHHHH
Q 002623 846 YIVFQPLD-RDQISSIVRLQVS 866 (899)
Q Consensus 846 ~i~f~~l~-~e~i~~I~~~~l~ 866 (899)
.|...+++ .++..+|+++.+.
T Consensus 212 ~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 212 EVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred eeeccCCCCHHHHHHHHHHHHH
Confidence 88887776 5666677776554
No 325
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.27 E-value=1.1e-10 Score=118.69 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=107.4
Q ss_pred HHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHhhcCCCcccc---------------CCCeEEEEEcccccccccccch
Q 002623 268 IQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL---------------MNRKLISLDMGALIAGAKYRGE 331 (899)
Q Consensus 268 ~~~l~~~~~-~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l---------------~~~~~~~l~~~~l~~~~~~~g~ 331 (899)
.+.+..... ..+||+||+|+|||++|+.+++.+.+... ... ....+..++...- . -
T Consensus 5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~-~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-----~--~ 76 (188)
T TIGR00678 5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQP-GGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-----S--I 76 (188)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCcEEEeccccC-----c--C
Confidence 333434444 45899999999999999999999865310 000 0111222221110 0 1
Q ss_pred HHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhccCHHH
Q 002623 332 FEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPAL 406 (899)
Q Consensus 332 ~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~d~al 406 (899)
..+.++.+++.+.. .++..|++|||+|.+. .+.++.|+..+++. ...+|.+|+... .+.+++
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~--------~~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~i 143 (188)
T TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMN--------EAAANALLKTLEEPPPNTLFILITPSPE-----KLLPTI 143 (188)
T ss_pred CHHHHHHHHHHHccCcccCCeEEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----hChHHH
Confidence 12345555555543 2456799999999997 56778888888864 466777776542 678999
Q ss_pred HccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 407 ERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 407 ~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
++|+..+.|.+|+.+++..+++.. + ++++++..++..+.+.
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGS 184 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCC
Confidence 999999999999999987777643 3 6888898898888753
No 326
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.27 E-value=8e-11 Score=128.81 Aligned_cols=225 Identities=18% Similarity=0.211 Sum_probs=138.1
Q ss_pred CCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCC----Cccc---------cCCCeEE-----
Q 002623 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGD----VPQA---------LMNRKLI----- 315 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~----~p~~---------l~~~~~~----- 315 (899)
|..++|++..++.++-.+-.....+++|.|+||+|||+++++++..+.... .|.. ..+++..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 567999999988887776666678999999999999999999998873211 0000 0000100
Q ss_pred ----------EEEcccccccccccchH--HHHHHH----HHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhh
Q 002623 316 ----------SLDMGALIAGAKYRGEF--EDRLKA----VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPM 379 (899)
Q Consensus 316 ----------~l~~~~l~~~~~~~g~~--~~~l~~----l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~ 379 (899)
..++..-.......|.. +..++. +-........+++|||||++.+. ...++.|..+
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~--------~~~Q~~Ll~~ 154 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE--------DHLVDVLLDV 154 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC--------HHHHHHHHHH
Confidence 01222111111122211 111100 00001112345799999999987 6778888888
Q ss_pred hcCC---------------CeEEEEecChhHHHhhhccCHHHHccCc-eEEecCCCH-HHHHHHHHHHHHH---------
Q 002623 380 LGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQPNV-EDTISILRGLRER--------- 433 (899)
Q Consensus 380 l~~~---------------~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ps~-ee~~~Il~~~~~~--------- 433 (899)
|+++ ++.+|+++|+.+. .+.+++..||. .+.++.|+. +++.+|++.....
T Consensus 155 l~~g~~~v~r~G~~~~~~~r~iviat~np~eg----~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~ 230 (337)
T TIGR02030 155 AASGWNVVEREGISIRHPARFVLVGSGNPEEG----ELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCE 230 (337)
T ss_pred HHhCCeEEEECCEEEEcCCCEEEEeccccccC----CCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhh
Confidence 8654 3567777776642 58899999998 788888864 7888888652110
Q ss_pred -H---------------hhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhh--ccCCchhHHHH
Q 002623 434 -Y---------------ELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME--ITSKPTALDEI 492 (899)
Q Consensus 434 -~---------------~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~--~~~~~~~l~~~ 492 (899)
+ .....+.++++.+.+++.++...-. .-|...+.++.-|.+.+.+. ....+.++...
T Consensus 231 ~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~--~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~ 305 (337)
T TIGR02030 231 KWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV--DGLRGELTLNRAAKALAAFEGRTEVTVDDIRRV 305 (337)
T ss_pred hhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 1 0113577888888888888754321 14556777777776666554 34556665543
No 327
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.27 E-value=1.1e-11 Score=122.82 Aligned_cols=112 Identities=27% Similarity=0.408 Sum_probs=75.3
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHH---hhCCCe
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQI 350 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~---~~~~~~ 350 (899)
++..+++|+||+|||||.+|++|++.+.-+ ...+++.+||+.+..+.. ....+..++.... .....+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~------~~~~~~~~d~s~~~~~~~----~~~~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVG------SERPLIRIDMSEYSEGDD----VESSVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-S------SCCEEEEEEGGGHCSHHH----CSCHCHHHHHHTTCHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccC------CccchHHHhhhcccccch----HHhhhhhhhhcccceeeccchh
Confidence 356789999999999999999999999311 246999999999876211 1111222222110 011234
Q ss_pred EEEEccchhhccCCCCC---chHHHHHHHhhhhcCC-------------CeEEEEecChhH
Q 002623 351 ILFIDEIHTVVGAGATN---GAMDAGNLLKPMLGRG-------------ELRCIGATTLDE 395 (899)
Q Consensus 351 IL~iDEi~~l~~~~~~~---~~~~~~~~L~~~l~~~-------------~v~~I~at~~~~ 395 (899)
|+||||||++.+..... ....+++.|+++++.| ++.+|+|+|...
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999999999642221 2347899999999754 678999998654
No 328
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.27 E-value=4.4e-10 Score=125.98 Aligned_cols=213 Identities=16% Similarity=0.159 Sum_probs=119.9
Q ss_pred CcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchH-HHH
Q 002623 257 VIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF-EDR 335 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~-~~~ 335 (899)
++|+++.|+.++..+. ...|+||+||||||||++|++|++.+.... +|..+.+.-. ......|.. ...
T Consensus 22 i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~--------~F~~~~~~ft-tp~DLfG~l~i~~ 90 (498)
T PRK13531 22 LYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR--------AFEYLMTRFS-TPEEVFGPLSIQA 90 (498)
T ss_pred ccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC--------cceeeeeeec-CcHHhcCcHHHhh
Confidence 9999999999998764 456999999999999999999999873221 2222221100 001111211 000
Q ss_pred H--HHHHHHHHhh--CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-----------Ce-EEEEecChhHHHhh
Q 002623 336 L--KAVLKEVTES--EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------EL-RCIGATTLDEYRKY 399 (899)
Q Consensus 336 l--~~l~~~~~~~--~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-----------~v-~~I~at~~~~~~~~ 399 (899)
. ..-|...... ...-+||+|||+.+. ...++.|..+|+.+ +. .+++|||+-+- .
T Consensus 91 ~~~~g~f~r~~~G~L~~A~lLfLDEI~ras--------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE--~ 160 (498)
T PRK13531 91 LKDEGRYQRLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE--A 160 (498)
T ss_pred hhhcCchhhhcCCccccccEEeecccccCC--------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc--c
Confidence 0 0011111100 011289999999877 67888899999543 22 34555553321 0
Q ss_pred hccCHHHHccCc-eEEecCCC-HHHHHHHHHHHHH---------------HH----hhhhCCCCCHHHHHHHHHhcccc-
Q 002623 400 IEKDPALERRFQ-QVYVDQPN-VEDTISILRGLRE---------------RY----ELHHGVRISDSALVEAAILSDRY- 457 (899)
Q Consensus 400 ~~~d~al~~Rf~-~i~~~~ps-~ee~~~Il~~~~~---------------~~----~~~~~~~i~~~~l~~~~~ls~~~- 457 (899)
-...+++..||. .|.+++|+ .++-..|+..... .+ .....+.+++...++++.+....
T Consensus 161 g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr 240 (498)
T PRK13531 161 DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLD 240 (498)
T ss_pred CCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHh
Confidence 012358999996 67888886 4555777753211 00 01135677888888777775310
Q ss_pred -cC--CCCChhhHHHHHHHHHHhh--hhhccCCchhHH
Q 002623 458 -IS--GRFLPDKAIDLVDEAAAKL--KMEITSKPTALD 490 (899)
Q Consensus 458 -i~--~~~~p~~a~~lld~a~~~~--~~~~~~~~~~l~ 490 (899)
.. ....|...+.++.-+-+.+ .-+....|.++.
T Consensus 241 ~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 241 ALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred cCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 01 1134445555555544443 334555666655
No 329
>PRK04132 replication factor C small subunit; Provisional
Probab=99.27 E-value=6.8e-11 Score=141.83 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=130.7
Q ss_pred CCcEEEc--CCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhC-----CC
Q 002623 277 NNPVLIG--EPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESE-----GQ 349 (899)
Q Consensus 277 ~~~LL~G--p~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~-----~~ 349 (899)
.+-+..| |++.||||+|++||+.+...+ .+.+++++|.++..+ .+.++.++..+.... +.
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~ 631 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASF 631 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCC
Confidence 3446779 999999999999999984422 256899999876421 113555555443211 23
Q ss_pred eEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHH
Q 002623 350 IILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISIL 427 (899)
Q Consensus 350 ~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il 427 (899)
.|+||||+|.|. .++++.|++.|+. +++++|++||... .+.+++++||+.+.|.+|+.++....|
T Consensus 632 KVvIIDEaD~Lt--------~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 632 KIIFLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EEEEEECcccCC--------HHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHH
Confidence 699999999998 6789999999995 7899999999876 678999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHH
Q 002623 428 RGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (899)
Q Consensus 428 ~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~ 476 (899)
+.++++ +++.++++++..++..|++- +.+|+.+++.+++
T Consensus 699 ~~I~~~----Egi~i~~e~L~~Ia~~s~GD------lR~AIn~Lq~~~~ 737 (846)
T PRK04132 699 RYIAEN----EGLELTEEGLQAILYIAEGD------MRRAINILQAAAA 737 (846)
T ss_pred HHHHHh----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Confidence 988886 68889999999999999763 4578888887654
No 330
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.26 E-value=1.8e-10 Score=126.91 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=121.7
Q ss_pred CCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc----
Q 002623 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 326 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---- 326 (899)
.+++++|.+..++++++.+.+ ....+|||+|++||||+++|++|+..... .+.+|+.+||..+....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHHHHHHH
Confidence 367799999999999987755 34568999999999999999999975422 26799999998763210
Q ss_pred -------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeE
Q 002623 327 -------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (899)
Q Consensus 327 -------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 386 (899)
.+.|..... ...+. ...++.|||||++.|. ...+..|..+++.+ +++
T Consensus 77 lfg~~~~~~~g~~~~~-~g~l~----~a~gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 77 LFGHEAGAFTGAQKRH-PGRFE----RADGGTLFLDELATAP--------MLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HccccccccCCccccc-CCchh----ccCCCeEEeCChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 001110000 01121 2346799999999998 67777888887643 478
Q ss_pred EEEecChhHHH--hhhccCHHHHccCceEEecCCCHHH----HHHHHHHHHHHHhhhhC----CCCCHHHHHHHHHh
Q 002623 387 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVED----TISILRGLRERYELHHG----VRISDSALVEAAIL 453 (899)
Q Consensus 387 ~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~ee----~~~Il~~~~~~~~~~~~----~~i~~~~l~~~~~l 453 (899)
+|++|+.+... ..-...+.|..||..+.|..|+..+ +..+++.++..+...++ ..++++++..+...
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y 220 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY 220 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC
Confidence 99998876421 1123457788899766666776554 45555666655554433 35788888777554
No 331
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.26 E-value=8.2e-11 Score=123.41 Aligned_cols=145 Identities=12% Similarity=0.175 Sum_probs=104.6
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||+|||||++|+++++.+...+..++.++|....... .. .....+|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~~--~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------DF--DPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------hh--cccCCEEEEeCh
Confidence 599999999999999999999987777889999988763221 00 112358999999
Q ss_pred CccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH
Q 002623 761 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 840 (899)
Q Consensus 761 d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll 840 (899)
|.+++..+..|+.+++... .....++|+|++..+. ...+.++++
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~---------------------------~~~l~~~L~ 143 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPL---------------------------ALPLREDLR 143 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHH---------------------------hCCCCHHHH
Confidence 9999999999999886411 0123456666665221 234678899
Q ss_pred hcc--ceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhccccc
Q 002623 841 NRV--DEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 841 ~R~--d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 893 (899)
+|| ...+.++||+.++...++.....+. ...++++++..+.+ .|+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~-------~v~l~~~al~~L~~-~~~ 190 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAER-------GLQLADEVPDYLLT-HFR 190 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHc-------CCCCCHHHHHHHHH-hcc
Confidence 998 3689999999887777766554433 26678888877777 565
No 332
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.7e-11 Score=133.35 Aligned_cols=143 Identities=29% Similarity=0.413 Sum_probs=100.2
Q ss_pred ceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC---------------------C
Q 002623 650 RVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE---------------------E 708 (899)
Q Consensus 650 ~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~---------------------~ 708 (899)
.++|++.++..+...+.... +.|. .+||+||||+|||++|.++|+.+++.. .
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcC------CCCc-eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 46777777777777765332 1111 399999999999999999999997543 2
Q ss_pred ceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC
Q 002623 709 ALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 784 (899)
Q Consensus 709 ~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~ 784 (899)
.++.++.++..... +..+..+.+..... ..++.|++|||+|.++++.+|+|+..+|.
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 34444444332210 01111112222222 13467999999999999999999999997
Q ss_pred CceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC
Q 002623 785 GRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (899)
Q Consensus 785 g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~ 853 (899)
+..++.||++||. ...+.|.+.+|| .++.|+|++
T Consensus 136 ----p~~~~~~il~~n~------------------------------~~~il~tI~SRc-~~i~f~~~~ 169 (325)
T COG0470 136 ----PPKNTRFILITND------------------------------PSKILPTIRSRC-QRIRFKPPS 169 (325)
T ss_pred ----CCCCeEEEEEcCC------------------------------hhhccchhhhcc-eeeecCCch
Confidence 4568999999996 567778999999 999999854
No 333
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.24 E-value=4.4e-12 Score=126.83 Aligned_cols=136 Identities=20% Similarity=0.250 Sum_probs=71.0
Q ss_pred CCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEc----ccccccccc
Q 002623 253 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM----GALIAGAKY 328 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~----~~l~~~~~~ 328 (899)
.|.+|+||+...+.+.-.. .+..|+||+||||||||++|+.+...+..-...+.+.-..++++.- ..+.....|
T Consensus 1 Df~dI~GQe~aKrAL~iAA--aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA--AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH--HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHH--cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 3789999997666555443 3457999999999999999999998875433222221111111110 000000000
Q ss_pred cc-hHHHHHHHHHHHHH-------hhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC---------------Ce
Q 002623 329 RG-EFEDRLKAVLKEVT-------ESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------EL 385 (899)
Q Consensus 329 ~g-~~~~~l~~l~~~~~-------~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v 385 (899)
+- .-......++.... .....+|||+||+..+. ..+.+.|++.|++| ++
T Consensus 79 r~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~--------~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f 150 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFD--------RSVLDALRQPLEDGEVTISRAGGSVTYPARF 150 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB--E
T ss_pred ccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC--------HHHHHHHHHHHHCCeEEEEECCceEEEeccc
Confidence 00 00000111111110 12346799999999886 78899999999877 55
Q ss_pred EEEEecChhHHHh
Q 002623 386 RCIGATTLDEYRK 398 (899)
Q Consensus 386 ~~I~at~~~~~~~ 398 (899)
.+|+|+|+.+...
T Consensus 151 ~lv~a~NPcpCG~ 163 (206)
T PF01078_consen 151 LLVAAMNPCPCGY 163 (206)
T ss_dssp EEEEEE-S-----
T ss_pred EEEEEeccccccc
Confidence 8999999876543
No 334
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=3.4e-11 Score=131.60 Aligned_cols=141 Identities=15% Similarity=0.200 Sum_probs=96.5
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch-------hhhhhhhhcCCC----------------------
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM-------EKHAVSRLIGAP---------------------- 731 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~-------~~~~~~~l~g~~---------------------- 731 (899)
.+||+||+|+||+++|+.+|+.+......-..-.|+... ..|....++...
T Consensus 23 a~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
T PRK06964 23 ALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEGG 102 (342)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhccc
Confidence 499999999999999999999995422100001122211 011111111100
Q ss_pred ------CCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCC
Q 002623 732 ------PGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (899)
Q Consensus 732 ------~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~ 801 (899)
...++.++.+.+...+.. ..+.|++||++|+|+....|+||+.||+ +.++++||++|+.
T Consensus 103 ~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~~ 171 (342)
T PRK06964 103 KKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVSAR 171 (342)
T ss_pred ccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEECC
Confidence 012233333444444432 3467999999999999999999999997 4568888888887
Q ss_pred ChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 802 GSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
.+.+.|.++||| +.|.|+|++.+++.+.+..
T Consensus 172 ------------------------------~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 172 ------------------------------IDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ------------------------------hhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 678899999999 9999999999998877654
No 335
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=4.4e-11 Score=129.51 Aligned_cols=161 Identities=12% Similarity=0.174 Sum_probs=111.8
Q ss_pred eeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchh-------hhh
Q 002623 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME-------KHA 723 (899)
Q Consensus 651 i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~-------~~~ 723 (899)
..++....+.+..++...+... .+||+||.|+||+.+|+.+|+.+...+..- ..|+.... .|.
T Consensus 5 yPWl~~~~~~l~~~~~~~rl~h--------A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRIPG--------ALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHP 74 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcce--------eEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCCC
Confidence 4567777788877765433211 499999999999999999999995433211 12332211 111
Q ss_pred hhhhcCCC--CCCcccccccchhHHHhhC----CCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 724 VSRLIGAP--PGYVGYEEGGQLTEVVRRR----PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 724 ~~~l~g~~--~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
....+... ...++.++.+.+...+... .+.|++||++|+|+....|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLL 143 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 11112111 1123334444454555433 368999999999999999999999998 556899999
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
+|+. ...+.|.++||| +.+.|++++.+++.+.+..
T Consensus 144 ~t~~------------------------------~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 144 VTHN------------------------------QKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EECC------------------------------hhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 8887 678889999999 9999999999988877654
No 336
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.24 E-value=1.2e-10 Score=137.68 Aligned_cols=184 Identities=24% Similarity=0.326 Sum_probs=127.2
Q ss_pred hcCCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc-
Q 002623 250 SAGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA- 326 (899)
Q Consensus 250 ~~~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~- 326 (899)
+.+.++.+||++..++++++.+.+ ....++||+||+|||||++|++|++.... .+.+|+.+||..+....
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHHHH
Confidence 346788999999999999987754 45568999999999999999999987632 36799999998763210
Q ss_pred ----------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------
Q 002623 327 ----------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (899)
Q Consensus 327 ----------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------- 383 (899)
.+.|....+ ...+. ...+++||||||+.|. .+.+..|.++++.+
T Consensus 264 ~~~lfg~~~~~~~~~~~~~-~g~~~----~a~~GtL~ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 330 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQR-KGRFE----LADGGTLFLDEIGEIS--------PAFQAKLLRVLQEGEFERVGGNRTLKV 330 (534)
T ss_pred HHHHcCCCCCccCCCCcCC-CCccc----ccCCCeEEEechhhCC--------HHHHHHHHHHHhcCcEEECCCCceEee
Confidence 000100000 00111 2346799999999998 67888888888654
Q ss_pred CeEEEEecChhHHH--hhhccCHHHHccCceEEecCCCH----HHHHHHHHHHHHHHhhhhC--CCCCHHHHHHHHHh
Q 002623 384 ELRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHG--VRISDSALVEAAIL 453 (899)
Q Consensus 384 ~v~~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~----ee~~~Il~~~~~~~~~~~~--~~i~~~~l~~~~~l 453 (899)
++++|++|+.+... ..-...+.|..||..+.|..|+. +++..+++.++.++...++ +.++++++..+..+
T Consensus 331 ~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 331 DVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred cEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 47999998876422 11134567778887656555554 5666777777777654433 67899998877554
No 337
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=3e-11 Score=132.57 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=112.3
Q ss_pred eeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch-------hhhh
Q 002623 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM-------EKHA 723 (899)
Q Consensus 651 i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~-------~~~~ 723 (899)
+.++....+.+...+...+... .+||+||+|+||+++|.++|+.+...+.. -.-.|+... ..|.
T Consensus 4 yPWl~~~~~~l~~~~~~~rl~H--------A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~-~~~~Cg~C~sC~~~~~g~HP 74 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRGHH--------ALLIQALPGMGDDALIYALSRWLMCQQPQ-GHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_pred CCCChHHHHHHHHHHHcCCcce--------EEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCCC
Confidence 4567777788877776433221 39999999999999999999999542110 001233221 0111
Q ss_pred hhhhcCCCC--CCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 724 VSRLIGAPP--GYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 724 ~~~l~g~~~--~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
....+.... ..++.++.+.+.+.+.. ..+.|++||++|+|+....|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (334)
T PRK07993 75 DYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFL 143 (334)
T ss_pred CEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 111111111 12444555555555553 4468999999999999999999999998 456889999
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
+|+. ...+.|.++||| +.+.|++++.+++...+..
T Consensus 144 ~t~~------------------------------~~~lLpTIrSRC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 144 ACRE------------------------------PARLLATLRSRC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred EECC------------------------------hhhChHHHHhcc-ccccCCCCCHHHHHHHHHH
Confidence 8887 678899999999 7899999999888876643
No 338
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=2.3e-11 Score=133.18 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=98.2
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccch------h-hhhhhhhcCCC--CCCcccccccchhHHHhh--
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYM------E-KHAVSRLIGAP--PGYVGYEEGGQLTEVVRR-- 749 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~------~-~~~~~~l~g~~--~~~~g~~~~~~l~~~~~~-- 749 (899)
.+||+||+|+||+++|+.+|+.+...... -.-.|.... . .|.....+... ...++.++.+.+.+.+..
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 49999999999999999999999542210 001122221 0 01101111110 012344444555555553
Q ss_pred --CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHH
Q 002623 750 --RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRV 827 (899)
Q Consensus 750 --~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (899)
..+.|++||++|+|+.+.+|+||+.||+ +..+++||++|+.
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~-------------------------- 145 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQ-------------------------- 145 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECC--------------------------
Confidence 3467999999999999999999999998 3457889998887
Q ss_pred HHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHH
Q 002623 828 MDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQ 864 (899)
Q Consensus 828 ~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~ 864 (899)
...+.|.++||| +++.|+|++.+++...+...
T Consensus 146 ----~~~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 146 ----PSRLLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred ----hhhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 567889999999 88999999999988777654
No 339
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.24 E-value=1e-10 Score=136.23 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=130.7
Q ss_pred hhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC-------CCCceEEeccccc
Q 002623 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN-------TEEALVRIDMSEY 718 (899)
Q Consensus 646 ~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~-------~~~~~~~i~~~~~ 718 (899)
++-+.++|.++.++.|...+..+..+.. |...++++|+||||||.+++.+.+.+-. ....+++|||..+
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsg----pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSG----SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCC----CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4457899999999999999987654422 2123579999999999999999887621 1245789999876
Q ss_pred hhhhhh-----hhhcCCCCCCcccccccchhHHHhh-----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCcee
Q 002623 719 MEKHAV-----SRLIGAPPGYVGYEEGGQLTEVVRR-----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 719 ~~~~~~-----~~l~g~~~~~~g~~~~~~l~~~~~~-----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
.....+ ..++|..+. .|......+...+.. ....||+|||||.+....++.|+.+++....
T Consensus 828 stp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~-------- 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK-------- 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------
Confidence 555433 233344432 222111122222221 2245999999999988788889988875221
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccce-EEecCCCCHHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDE-YIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~-~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
....++||+++|.-. +...+.|.+.+||.. .|.|+||+.+++..|+...+..
T Consensus 899 s~SKLiLIGISNdlD---------------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 899 INSKLVLIAISNTMD---------------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cCCeEEEEEecCchh---------------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 113588999998610 034566778888854 5999999999999999999876
Q ss_pred HHhhcccCCCccCHHHHHHhh
Q 002623 868 SKVSWIYSPWHFNYEMLVKFC 888 (899)
Q Consensus 868 ~~~~~~~~~~~~~~~~l~~~~ 888 (899)
.. .-++++++...+
T Consensus 952 A~-------gVLdDdAIELIA 965 (1164)
T PTZ00112 952 CK-------EIIDHTAIQLCA 965 (1164)
T ss_pred CC-------CCCCHHHHHHHH
Confidence 31 236666654443
No 340
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.23 E-value=4.9e-11 Score=135.24 Aligned_cols=187 Identities=19% Similarity=0.281 Sum_probs=134.2
Q ss_pred hcccHHHHHhcCCCCCCcCchHHHHHHHHHhh----------------------------------cCCCCCcEEEcCCC
Q 002623 241 YGKDLTAMASAGKLDPVIGRDDEIRRCIQILS----------------------------------RRTKNNPVLIGEPG 286 (899)
Q Consensus 241 ~~~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~----------------------------------~~~~~~~LL~Gp~G 286 (899)
.+.=|..+|+|..|.+++|-+..-+.++..|+ |+.++-+||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 44468889999999999998877666665541 12234468999999
Q ss_pred CcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHH---hhCCCeEEEEccchhhccC
Q 002623 287 VGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT---ESEGQIILFIDEIHTVVGA 363 (899)
Q Consensus 287 ~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~---~~~~~~IL~iDEi~~l~~~ 363 (899)
-||||||+.+|+.. |+.++++|.++-.++.. +.+++...+..-. +...|.+|+|||||--.
T Consensus 337 lGKTTLAHViAkqa----------GYsVvEINASDeRt~~~----v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-- 400 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA----------GYSVVEINASDERTAPM----VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-- 400 (877)
T ss_pred CChhHHHHHHHHhc----------CceEEEecccccccHHH----HHHHHHHHHhhccccccCCCcceEEEecccCCc--
Confidence 99999999999998 99999999988765542 2333332221111 12468899999998544
Q ss_pred CCCCchHHHHHHHhhhhcC------C-----------------CeEEEEecChhHHHhhhccCHHHHc--cCc-eEEecC
Q 002623 364 GATNGAMDAGNLLKPMLGR------G-----------------ELRCIGATTLDEYRKYIEKDPALER--RFQ-QVYVDQ 417 (899)
Q Consensus 364 ~~~~~~~~~~~~L~~~l~~------~-----------------~v~~I~at~~~~~~~~~~~d~al~~--Rf~-~i~~~~ 417 (899)
..+.++|+.++.. | .--|||.||.- | -|+|+. -|. .|.|.+
T Consensus 401 ------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-Y------aPaLR~Lr~~A~ii~f~~ 467 (877)
T KOG1969|consen 401 ------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-Y------APALRPLRPFAEIIAFVP 467 (877)
T ss_pred ------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc-c------chhhhhcccceEEEEecC
Confidence 4455556555531 1 11367777764 2 588876 344 788999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCC
Q 002623 418 PNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISG 460 (899)
Q Consensus 418 ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~ 460 (899)
|+..-..+-|+.++.+ +++.++..++.++++++...|..
T Consensus 468 p~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DIRs 506 (877)
T KOG1969|consen 468 PSQSRLVERLNEICHR----ENMRADSKALNALCELTQNDIRS 506 (877)
T ss_pred CChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchHHH
Confidence 9999888888888887 89999999999999999876544
No 341
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.8e-11 Score=132.04 Aligned_cols=174 Identities=21% Similarity=0.223 Sum_probs=123.6
Q ss_pred HHhhccceeccchHHHHHHHHHHHHHc---CCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchh
Q 002623 644 EEELHKRVVGQDPAVKSVAEAIQRSRA---GLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME 720 (899)
Q Consensus 644 ~~~l~~~i~Gq~~~~~~l~~~l~~~~~---~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~ 720 (899)
.+..|..+.|.+.+++.+.+.+..--. ....-+.|...+||.||||+|||+++++||..+ +..|+.+..+.+..
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLts 224 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTS 224 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhh
Confidence 345588999999999999888753211 122234455569999999999999999999998 78888888887744
Q ss_pred hhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccC-----------hHH-HHHHHHhhcCCeeecCCCcee
Q 002623 721 KHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH-----------SDV-FNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 721 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~-----------~~~-~~~Ll~~le~g~~~~~~g~~~ 788 (899)
+ +.|... .-.+.++...+...++|+|+||||++- +.. .+.|++.. .. ..-
T Consensus 225 K-----~~Ge~e-----K~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~-~~-~s~------ 286 (428)
T KOG0740|consen 225 K-----YVGESE-----KLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD-GK-NSA------ 286 (428)
T ss_pred h-----ccChHH-----HHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc-cc-cCC------
Confidence 3 333221 112456777778888999999999753 223 33333332 11 111
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
.-.++++|+|||. ...++.+++.||..++.+|.++.+....++...|.+.
T Consensus 287 ~~drvlvigaTN~------------------------------P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 287 PDDRVLVIGATNR------------------------------PWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred CCCeEEEEecCCC------------------------------chHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 1137899999999 4556677788997889999999999999999999876
No 342
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.22 E-value=9.6e-11 Score=138.47 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=80.0
Q ss_pred hHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCc------e----eeeCCEEEEEecCCChhhhhccCCCC
Q 002623 744 TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGR------T----VSFTNTVIIMTSNVGSQYILNMDDET 813 (899)
Q Consensus 744 ~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~------~----~~~~~~iiI~ttN~~~~~~~~~~~~~ 813 (899)
.+.+.++.+|+|||||++.+++..|..|+++|+++.+....+. . ....++++|+++|+..
T Consensus 210 ~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---------- 279 (608)
T TIGR00764 210 AGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---------- 279 (608)
T ss_pred CCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH----------
Confidence 3455577889999999999999999999999999987653321 1 1124889999999720
Q ss_pred CCCcchHHHHHHHHHHHHHhcCChHHHhccc---eEEecCC---CCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHh
Q 002623 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQP---LDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKF 887 (899)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d---~~i~f~~---l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~ 887 (899)
...++|+|++||+ ..+.|++ .+.+...++++....... +.+. ..+|+.+++.++
T Consensus 280 ------------------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~-r~G~-l~~~s~~Av~~L 339 (608)
T TIGR00764 280 ------------------LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVK-KDGR-IPHFTRDAVEEI 339 (608)
T ss_pred ------------------HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHH-HhCC-CCcCCHHHHHHH
Confidence 3468999999998 6666654 345565555443333333 3222 237888887766
Q ss_pred hc
Q 002623 888 CY 889 (899)
Q Consensus 888 ~~ 889 (899)
..
T Consensus 340 i~ 341 (608)
T TIGR00764 340 VR 341 (608)
T ss_pred HH
Confidence 53
No 343
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.2e-10 Score=122.68 Aligned_cols=170 Identities=23% Similarity=0.343 Sum_probs=119.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccch-HHHHHHHHHHHHHh---hCCCe
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGE-FEDRLKAVLKEVTE---SEGQI 350 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~-~~~~l~~l~~~~~~---~~~~~ 350 (899)
.+.|+||+||+|+|||.||+.||+.+ +.||.-.||..+... .|+|+ +|.-+.+++..+.- ....+
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQA-GYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQA-GYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhc-ccccccHHHHHHHHHHHccCCHHHHhcC
Confidence 56899999999999999999999999 999999999998753 38886 44445666665541 23467
Q ss_pred EEEEccchhhccCCCC------CchHHHHHHHhhhhcC---------------C--------CeEEEEecChhHHHh---
Q 002623 351 ILFIDEIHTVVGAGAT------NGAMDAGNLLKPMLGR---------------G--------ELRCIGATTLDEYRK--- 398 (899)
Q Consensus 351 IL~iDEi~~l~~~~~~------~~~~~~~~~L~~~l~~---------------~--------~v~~I~at~~~~~~~--- 398 (899)
|+||||+|.+..+... -+...++..|+.+++. | ++.+|+..-.....+
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 9999999999833221 1345567778778752 1 344444322110000
Q ss_pred ------------------------------------------------hhccCHHHHccCc-eEEecCCCHHHHHHHH--
Q 002623 399 ------------------------------------------------YIEKDPALERRFQ-QVYVDQPNVEDTISIL-- 427 (899)
Q Consensus 399 ------------------------------------------------~~~~d~al~~Rf~-~i~~~~ps~ee~~~Il-- 427 (899)
.|.+-|.|.-||. .+.+...+.+++.+||
T Consensus 374 rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtE 453 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTE 453 (564)
T ss_pred HhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhc
Confidence 0234488999997 5788888999999998
Q ss_pred --HHHHHHHhhhh-----CCCCCHHHHHHHHHhcc
Q 002623 428 --RGLRERYELHH-----GVRISDSALVEAAILSD 455 (899)
Q Consensus 428 --~~~~~~~~~~~-----~~~i~~~~l~~~~~ls~ 455 (899)
..+..+|.... .+.+++++++.+++++-
T Consensus 454 PknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al 488 (564)
T KOG0745|consen 454 PKNALGKQYKKLFGMDNVELHFTEKALEAIAQLAL 488 (564)
T ss_pred chhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHH
Confidence 35566666443 34689999999988874
No 344
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.22 E-value=7.6e-11 Score=116.54 Aligned_cols=138 Identities=23% Similarity=0.331 Sum_probs=88.5
Q ss_pred CcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccc--------c
Q 002623 257 VIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG--------A 326 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~--------~ 326 (899)
+||.++.++++++.+.+ ....++||+|++||||+.+|++|++...+ .+.+|+.+||+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcc
Confidence 58999999999987755 45578999999999999999999996522 3679999999876311 0
Q ss_pred c---ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEEEe
Q 002623 327 K---YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 390 (899)
Q Consensus 327 ~---~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I~a 390 (899)
. +.|....+ ..++.. ..+++||||||+.|. .+++..|.++++.+ ++++|++
T Consensus 74 ~~~~~~~~~~~~-~G~l~~----A~~GtL~Ld~I~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 74 EKGAFTGARSDK-KGLLEQ----ANGGTLFLDEIEDLP--------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp CSSSSTTTSSEB-EHHHHH----TTTSEEEEETGGGS---------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred cccccccccccc-CCceee----ccceEEeecchhhhH--------HHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 0 00100000 123332 356799999999998 78888999998743 7899999
Q ss_pred cChhHHH--hhhccCHHHHccCceEE
Q 002623 391 TTLDEYR--KYIEKDPALERRFQQVY 414 (899)
Q Consensus 391 t~~~~~~--~~~~~d~al~~Rf~~i~ 414 (899)
|+.+... ..-...+.|.-|+..+.
T Consensus 141 t~~~l~~~v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 141 TSKDLEELVEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp ESS-HHHHHHTTSS-HHHHHHHTTEE
T ss_pred cCcCHHHHHHcCCChHHHHHHhceEe
Confidence 9976421 11123455555665444
No 345
>PHA02244 ATPase-like protein
Probab=99.22 E-value=9.8e-11 Score=126.76 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=93.6
Q ss_pred CcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccc--c-cccc-cccc
Q 002623 257 VIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA--L-IAGA-KYRG 330 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--l-~~~~-~~~g 330 (899)
.+|..+.+......+.+ ....+++|+||||||||++|+++|..+ +.+++.++... + ..|. ...|
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g 167 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANG 167 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhcccccccc
Confidence 56665544433332221 344689999999999999999999998 88888886321 0 0110 0111
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-------------CCeEEEEecChhH--
Q 002623 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-------------GELRCIGATTLDE-- 395 (899)
Q Consensus 331 ~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-------------~~v~~I~at~~~~-- 395 (899)
.+. -..++..+ ..+++|||||++.+. .+++..|.++++. .++++|+|+|...
T Consensus 168 ~~~--dgpLl~A~---~~GgvLiLDEId~a~--------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G 234 (383)
T PHA02244 168 KFH--ETPFYEAF---KKGGLFFIDEIDASI--------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKG 234 (383)
T ss_pred ccc--chHHHHHh---hcCCEEEEeCcCcCC--------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccC
Confidence 111 11222222 246799999999887 6677777777752 4789999999842
Q ss_pred ----HHhhhccCHHHHccCceEEecCCCHH
Q 002623 396 ----YRKYIEKDPALERRFQQVYVDQPNVE 421 (899)
Q Consensus 396 ----~~~~~~~d~al~~Rf~~i~~~~ps~e 421 (899)
|.....+++++++||..|.|..|+.-
T Consensus 235 ~~~~y~G~k~L~~AllDRFv~I~~dyp~~~ 264 (383)
T PHA02244 235 ADHIYVARNKIDGATLDRFAPIEFDYDEKI 264 (383)
T ss_pred cccccCCCcccCHHHHhhcEEeeCCCCcHH
Confidence 21224789999999999999999743
No 346
>PRK06893 DNA replication initiation factor; Validated
Probab=99.22 E-value=1.2e-10 Score=122.04 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=94.7
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
.++|+||||||||++++++++.+...+....++++....... ..+...++ ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS------------------PAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh------------------HHHHhhcc--cCCEEEEeCh
Confidence 489999999999999999999885545555555554221000 01111122 2359999999
Q ss_pred CccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChH
Q 002623 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (899)
Q Consensus 761 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 838 (899)
+... +..+..|+.+++... .....++|+|+|..+..+ ....|.
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l--------------------------~~~~~~ 145 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHAL--------------------------SIKLPD 145 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHc--------------------------cccchh
Confidence 9875 445566777776411 012356678888755443 234478
Q ss_pred HHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHh
Q 002623 839 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKF 887 (899)
Q Consensus 839 ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~ 887 (899)
+.+|+. .++.+++|+.+++.+|+++.+...+ ..++++++..+
T Consensus 146 L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-------l~l~~~v~~~L 189 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-------IELSDEVANFL 189 (229)
T ss_pred HHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHH
Confidence 889884 4889999999999999998876443 44556664443
No 347
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.22 E-value=1.4e-10 Score=134.42 Aligned_cols=179 Identities=16% Similarity=0.238 Sum_probs=121.8
Q ss_pred CCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccc----
Q 002623 252 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG---- 325 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~---- 325 (899)
..|++++|.++.++++.+.+.+ ....++||+|++||||+.+|++|++.... .+.+|+.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHHH
Confidence 5688899999999998887753 45578999999999999999999986522 3679999999876321
Q ss_pred ----c---cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------Ce
Q 002623 326 ----A---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 385 (899)
Q Consensus 326 ----~---~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 385 (899)
. .|.|.....-..+|+. ..++.||||||+.|. ...+..|.++++++ ++
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e~----A~gGTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dv 349 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIEA----AHRGTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPVPVDV 349 (526)
T ss_pred HhcCCcccccccccccccccchhh----cCCceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCceeeecc
Confidence 0 0111100000112222 346799999999998 77888888888654 35
Q ss_pred EEEEecChhHHHh--hhccCHHHHccCceEEecCCCHH----HHHHHHHHHHHHHhhhhCCCCCHHHHHH
Q 002623 386 RCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHHGVRISDSALVE 449 (899)
Q Consensus 386 ~~I~at~~~~~~~--~~~~d~al~~Rf~~i~~~~ps~e----e~~~Il~~~~~~~~~~~~~~i~~~~l~~ 449 (899)
++|++|+.+.... .-...+.|..|+..+.+..|+.. ++..+++.++.++....++.++++++..
T Consensus 350 RiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 350 RVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred eEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8999998765311 11233456668876777777654 4555556666666555567788888765
No 348
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.22 E-value=6.3e-11 Score=131.23 Aligned_cols=153 Identities=25% Similarity=0.363 Sum_probs=112.0
Q ss_pred CCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHH
Q 002623 256 PVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR 335 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~ 335 (899)
.++|++..+..++..+. ...++||.||||||||++|+.+|+.+ +.+++.++|..........|...-.
T Consensus 25 ~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHh
Confidence 38888888887776553 44589999999999999999999999 8999999998876666555543333
Q ss_pred HHHH-HHHHHhhCC----C--eEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--------------CeEEEEecChh
Q 002623 336 LKAV-LKEVTESEG----Q--IILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLD 394 (899)
Q Consensus 336 l~~l-~~~~~~~~~----~--~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~~I~at~~~ 394 (899)
.... .....-..+ . +|+|+|||++.. ..+++.|.++|+.+ .+.+|+|+|+.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~--------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP--------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhhccCCeEEEecCCcccccceEEEEeccccCC--------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 2100 000000011 1 399999999887 77899999999752 45678888988
Q ss_pred HHHhhhccCHHHHccCc-eEEecCC-CHHHHHHHHH
Q 002623 395 EYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILR 428 (899)
Q Consensus 395 ~~~~~~~~d~al~~Rf~-~i~~~~p-s~ee~~~Il~ 428 (899)
+|.....++.++++||. .+.+..| +.++...++.
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 88777788999999994 8999999 5554444443
No 349
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.21 E-value=1.1e-10 Score=137.19 Aligned_cols=118 Identities=11% Similarity=0.151 Sum_probs=80.6
Q ss_pred hHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCC------c----eeeeCCEEEEEecCCChhhhhccCCCC
Q 002623 744 TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQG------R----TVSFTNTVIIMTSNVGSQYILNMDDET 813 (899)
Q Consensus 744 ~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g------~----~~~~~~~iiI~ttN~~~~~~~~~~~~~ 813 (899)
.+.+.++.+|+|||||++.+++..|..|+++|+++.+....+ . ..-..++++|+++|...
T Consensus 219 ~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---------- 288 (637)
T PRK13765 219 AGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---------- 288 (637)
T ss_pred CCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH----------
Confidence 345557788999999999999999999999999998754321 0 11124789999999821
Q ss_pred CCCcchHHHHHHHHHHHHHhcCChHHHhccc---eEEecCCCCHHHHHHHHHHHHHHHHhhccc--CCCccCHHHHHHhh
Q 002623 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVD---EYIVFQPLDRDQISSIVRLQVSFSKVSWIY--SPWHFNYEMLVKFC 888 (899)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d---~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~--~~~~~~~~~l~~~~ 888 (899)
...++|+|++||. ..+.|..-. ++..+.+++++..+..+... ...+|+.+++..+.
T Consensus 289 ------------------l~~~dpdL~~rfk~~~v~v~f~~~~-~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI 349 (637)
T PRK13765 289 ------------------LENMHPALRSRIKGYGYEVYMRDTM-EDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEII 349 (637)
T ss_pred ------------------HHhhhHHHHHHhccCeEEEEccccc-CCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHH
Confidence 3445899999996 567776543 34445555555555544433 24578998866665
Q ss_pred cc
Q 002623 889 YL 890 (899)
Q Consensus 889 ~~ 890 (899)
.+
T Consensus 350 ~~ 351 (637)
T PRK13765 350 RE 351 (637)
T ss_pred HH
Confidence 43
No 350
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.20 E-value=3.3e-10 Score=125.74 Aligned_cols=152 Identities=21% Similarity=0.290 Sum_probs=110.5
Q ss_pred CCcCchHHHHHHHHHhh-cCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCcccc--------------CCCeEEEEEc
Q 002623 256 PVIGRDDEIRRCIQILS-RRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQAL--------------MNRKLISLDM 319 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~-~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l--------------~~~~~~~l~~ 319 (899)
+++|.+..+..+..... .....| +||+||||+|||++|.++|+.+.+....... ....+++++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57788888888887765 344566 9999999999999999999999764321111 2346778876
Q ss_pred ccccccccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChh
Q 002623 320 GALIAGAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLD 394 (899)
Q Consensus 320 ~~l~~~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~ 394 (899)
++.... .-..+.++++....... ++.-|++|||+|.+. .+++|.|+..++. .+.++|.+||..
T Consensus 82 s~~~~~----~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 82 SDLRKI----DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------EDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred cccCCC----cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------HHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 654321 12344555555544432 345799999999998 7899999999985 478899999965
Q ss_pred HHHhhhccCHHHHccCceEEecCCCHHHHH
Q 002623 395 EYRKYIEKDPALERRFQQVYVDQPNVEDTI 424 (899)
Q Consensus 395 ~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~ 424 (899)
. .+-|.+++||..+.|.+|+.....
T Consensus 150 ~-----~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 150 S-----KILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred h-----hccchhhhcceeeecCCchHHHHH
Confidence 4 577899999999999886555433
No 351
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.20 E-value=1.9e-10 Score=137.51 Aligned_cols=162 Identities=23% Similarity=0.336 Sum_probs=105.5
Q ss_pred CCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCC----C-----cc----------------c
Q 002623 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGD----V-----PQ----------------A 308 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~----~-----p~----------------~ 308 (899)
|..|||++..++.+.-.+......++||.||+|||||++|++|++.+..-. . |. .
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 567999998777776655555557899999999999999999999883100 0 00 0
Q ss_pred cCCCeEEEEEcccccccccccch--HHHHHHH---HH-HHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC
Q 002623 309 LMNRKLISLDMGALIAGAKYRGE--FEDRLKA---VL-KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR 382 (899)
Q Consensus 309 l~~~~~~~l~~~~l~~~~~~~g~--~~~~l~~---l~-~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~ 382 (899)
....+|+.+.++.... ...|. ++..+.. .+ ........++|||||||+.+. ...++.|..+|+.
T Consensus 83 ~~~~pfv~~p~~~t~~--~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------~~~q~~Ll~~le~ 152 (633)
T TIGR02442 83 QRPVPFVNLPLGATED--RVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------DHLVDVLLDAAAM 152 (633)
T ss_pred cCCCCeeeCCCCCcHH--HcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------HHHHHHHHHHHhc
Confidence 1234666665443211 01121 1111100 00 000112245799999999998 7788999999986
Q ss_pred C---------------CeEEEEecChhHHHhhhccCHHHHccCc-eEEecCC-CHHHHHHHHHH
Q 002623 383 G---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILRG 429 (899)
Q Consensus 383 ~---------------~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p-s~ee~~~Il~~ 429 (899)
| ++.+|+|+|+.+. .+.++|.+||. .|.++.+ +.+++.++++.
T Consensus 153 g~~~v~r~g~~~~~~~~~~lIat~np~eg----~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 153 GVNRVEREGLSVSHPARFVLIGTMNPEEG----DLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred CCEEEEECCceeeecCCeEEEEecCCCCC----CCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 6 3788999887642 57899999998 6777776 45777777754
No 352
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.20 E-value=7.9e-10 Score=110.30 Aligned_cols=193 Identities=22% Similarity=0.310 Sum_probs=136.2
Q ss_pred CCCCcCchHH----HHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccccc
Q 002623 254 LDPVIGRDDE----IRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 329 (899)
Q Consensus 254 l~~iiG~~~~----i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~ 329 (899)
+.+++|.+.. ++...+.+...+.+|+||+|.-|+||+++++++..++... +..+++++-.++.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~------ 125 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA------ 125 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh------
Confidence 4457776654 4444455666788999999999999999999999998553 6679999877665
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC------CeEEEEecChhHHHh-hh--
Q 002623 330 GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------ELRCIGATTLDEYRK-YI-- 400 (899)
Q Consensus 330 g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------~v~~I~at~~~~~~~-~~-- 400 (899)
.+-.+++.++....+.|||.|++- +..+ .+....|+.+|+.| +|.+-+|+|.-..-. ++
T Consensus 126 -----~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~d 193 (287)
T COG2607 126 -----TLPDLVELLRARPEKFILFCDDLS--FEEG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKD 193 (287)
T ss_pred -----hHHHHHHHHhcCCceEEEEecCCC--CCCC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhh
Confidence 366778888877788999999984 2222 56778899999855 788888888542211 00
Q ss_pred ------ccC--------HHHHccCc-eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHH-HHHhcccccCCCCCh
Q 002623 401 ------EKD--------PALERRFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVE-AAILSDRYISGRFLP 464 (899)
Q Consensus 401 ------~~d--------~al~~Rf~-~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~-~~~ls~~~i~~~~~p 464 (899)
+++ -+|-.||. .+.|.+++.++-..|++.+++. .++.++++.++. +.+.+.+ .+....
T Consensus 194 n~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~~eAl~WAt~--rg~RSG 267 (287)
T COG2607 194 NEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELHAEALQWATT--RGGRSG 267 (287)
T ss_pred CCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHh--cCCCcc
Confidence 122 23566998 8999999999999999999877 788887766543 3333321 122244
Q ss_pred hhHHHHHHHHHHh
Q 002623 465 DKAIDLVDEAAAK 477 (899)
Q Consensus 465 ~~a~~lld~a~~~ 477 (899)
..|...++..+.+
T Consensus 268 R~A~QF~~~~~g~ 280 (287)
T COG2607 268 RVAWQFIRDLAGR 280 (287)
T ss_pred HhHHHHHHHHHhh
Confidence 4666666655544
No 353
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.19 E-value=2.3e-10 Score=132.35 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=118.9
Q ss_pred CCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhh-cCCCccccCCCeEEEEEcccccccc--
Q 002623 252 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIV-QGDVPQALMNRKLISLDMGALIAGA-- 326 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~-~~~~p~~l~~~~~~~l~~~~l~~~~-- 326 (899)
..|++++|.++.++++.+.+.+ +...++||+|++||||+.+|++|++.+. ..+.+....+.+|+.+||+.+....
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 4688899999999998887643 4557899999999999999999998732 1111011247899999998863210
Q ss_pred ---------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------C
Q 002623 327 ---------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (899)
Q Consensus 327 ---------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 384 (899)
.+.|.....-..+|+. ..++.||||||+.|. ...+..|.++++++ +
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~----A~gGTLfLdeI~~Lp--------~~~Q~kLl~~L~e~~~~r~G~~~~~~~d 363 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEI----AHGGTLFLDEIGEMP--------LPLQTRLLRVLEEKEVTRVGGHQPVPVD 363 (538)
T ss_pred HHhcCCccccccCccccccCCchhc----cCCCEEEEcChHhCC--------HHHHHHHHhhhhcCeEEecCCCceeccc
Confidence 0111100000112222 346799999999998 77888888888754 4
Q ss_pred eEEEEecChhHHHh--hhccCHHHHccCceEEecCCCHHHHHH----HHHHHHHHHhhhhCCCCCHHHH
Q 002623 385 LRCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHGVRISDSAL 447 (899)
Q Consensus 385 v~~I~at~~~~~~~--~~~~d~al~~Rf~~i~~~~ps~ee~~~----Il~~~~~~~~~~~~~~i~~~~l 447 (899)
+++|++|+.+.... --...+.|..|+..+.+..|+..++.+ +++.++.++....+..++++++
T Consensus 364 vRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 432 (538)
T PRK15424 364 VRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALR 432 (538)
T ss_pred eEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 58999998764211 011335566688877788887655544 4455555543334555666655
No 354
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.18 E-value=1.8e-10 Score=111.25 Aligned_cols=150 Identities=25% Similarity=0.389 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCC
Q 002623 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPP 732 (899)
Q Consensus 653 Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~ 732 (899)
|++..+..+...+.. +.. .+++++||||||||++++.+++.+...+.+++.+++.+...........+..
T Consensus 2 ~~~~~~~~i~~~~~~-------~~~--~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALEL-------PPP--KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhC-------CCC--CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 455555666555432 111 1599999999999999999999986667788899988775443222111100
Q ss_pred CCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCC
Q 002623 733 GYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDE 812 (899)
Q Consensus 733 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~ 812 (899)
..............++|+|||++.+.+.....+++.++...... ....++.+|+++|...
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~--------- 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPL--------- 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCccc---------
Confidence 00011122224456899999999998888888888887632110 1125788999998822
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCC
Q 002623 813 TFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQP 851 (899)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~ 851 (899)
...+.+.+.+||+..+.++|
T Consensus 132 -------------------~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 132 -------------------LGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred -------------------cCCcChhHHhhhccEeecCC
Confidence 12567788899988888765
No 355
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=2.5e-10 Score=125.98 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCCCcC-chHHHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCCCcccc--------------CCCeEEEE
Q 002623 254 LDPVIG-RDDEIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGDVPQAL--------------MNRKLISL 317 (899)
Q Consensus 254 l~~iiG-~~~~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~~p~~l--------------~~~~~~~l 317 (899)
++.++| ++..++.+...+......|. ||+||+|+|||++|+.+++.+.+.+..... ....+..+
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 456788 77777877777776666665 999999999999999999999764311100 01112222
Q ss_pred EcccccccccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecC
Q 002623 318 DMGALIAGAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATT 392 (899)
Q Consensus 318 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~ 392 (899)
... |.. -..+.++.+.+.+.. .++.-|++|||+|.+. ..++|.|+..||+ +.+.+|.+|+
T Consensus 84 ~~~----~~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 84 APD----GQS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccc----ccc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEeC
Confidence 111 110 112345556555542 2345699999999997 7789999999996 5777888777
Q ss_pred hhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHH
Q 002623 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 428 (899)
Q Consensus 393 ~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~ 428 (899)
... .+-|.+++||..+.|.+|+.++..+.+.
T Consensus 149 ~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 149 NKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 554 6789999999999999999998766654
No 356
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.17 E-value=3.3e-11 Score=116.11 Aligned_cols=111 Identities=24% Similarity=0.386 Sum_probs=74.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHH-------HHHHHHHHHhhCCCe
Q 002623 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR-------LKAVLKEVTESEGQI 350 (899)
Q Consensus 278 ~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~-------l~~l~~~~~~~~~~~ 350 (899)
|+||+||||||||++|+.+|+.+ +.+++.++++.........|...-. -..+...+ ..++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc---ccee
Confidence 58999999999999999999999 8899999887743222221211100 00011111 1467
Q ss_pred EEEEccchhhccCCCCCchHHHHHHHhhhhcCC---------------------CeEEEEecChhHHHhhhccCHHHHcc
Q 002623 351 ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------------ELRCIGATTLDEYRKYIEKDPALERR 409 (899)
Q Consensus 351 IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------------~v~~I~at~~~~~~~~~~~d~al~~R 409 (899)
|+||||++... .++.+.|.++++.+ ++++|+|+|+.. .....++++|++|
T Consensus 68 il~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 99999999886 66777788877532 289999999887 4445789999999
Q ss_pred C
Q 002623 410 F 410 (899)
Q Consensus 410 f 410 (899)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 357
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=3.6e-10 Score=127.56 Aligned_cols=184 Identities=21% Similarity=0.289 Sum_probs=115.1
Q ss_pred hhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC--C----CceEEeccccch
Q 002623 646 ELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--E----EALVRIDMSEYM 719 (899)
Q Consensus 646 ~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~----~~~~~i~~~~~~ 719 (899)
+..+.++|.+..++.|...+.....+.. | ++++++||||||||++++.+.+.+... + ..++++||....
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~----~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSR----P-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCC----C-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 3446789999999999999876544322 1 159999999999999999999876321 1 468899998765
Q ss_pred hhhhh-----hhhc--CCCCCCcccccc---cchhHHHh-hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCcee
Q 002623 720 EKHAV-----SRLI--GAPPGYVGYEEG---GQLTEVVR-RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 720 ~~~~~-----~~l~--g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
....+ ..+. |......+.... ..+.+.+. ..+..||+|||+|.+....+..|..++.-..... .
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-----~ 161 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-----L 161 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-----C
Confidence 43222 1222 222111121111 12233333 2345789999999995332233333332110000 1
Q ss_pred eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccc-eEEecCCCCHHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQVS 866 (899)
Q Consensus 789 ~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d-~~i~f~~l~~e~i~~I~~~~l~ 866 (899)
...++.+|+++|... +...+.+.+.+||. ..|.|+|++.+++..|+...+.
T Consensus 162 ~~~~v~lI~i~n~~~---------------------------~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 162 DNAKVGVIGISNDLK---------------------------FRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CCCeEEEEEEECCcc---------------------------hHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 124678888888621 02356677778885 5799999999999999999886
No 358
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.17 E-value=3.4e-10 Score=115.25 Aligned_cols=87 Identities=21% Similarity=0.389 Sum_probs=70.9
Q ss_pred eEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHH
Q 002623 753 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 832 (899)
Q Consensus 753 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (899)
+||||||++.++-+.+..|.+.||+. -..++|++||.|-+.+.+- .+... +
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~------------iaPivifAsNrG~~~irGt--~d~~s---------------P 348 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESP------------IAPIVIFASNRGMCTIRGT--EDILS---------------P 348 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCC------------CCceEEEecCCcceeecCC--cCCCC---------------C
Confidence 89999999999999999999999962 2357899999987665431 00111 5
Q ss_pred hcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 833 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 833 ~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
..+++++++|+ .+|+..+++++++++|++...+..+
T Consensus 349 hGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~ 384 (456)
T KOG1942|consen 349 HGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVEG 384 (456)
T ss_pred CCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhhhc
Confidence 67899999999 9999999999999999998877555
No 359
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.16 E-value=5.6e-10 Score=130.75 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=125.3
Q ss_pred CCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc----
Q 002623 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 326 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---- 326 (899)
.+..+||++..++++.+.+.+ ....++||+|++|||||++|++|+..... .+.+++.+||..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChHHHHHH
Confidence 567899999999999987755 45578999999999999999999987632 36799999998763210
Q ss_pred -------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeE
Q 002623 327 -------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (899)
Q Consensus 327 -------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 386 (899)
.+.|....+ ...+. ...++.||||||+.|. .+.+..|.++++.+ +++
T Consensus 258 lfG~~~g~~~ga~~~~-~g~~~----~a~gGtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 258 LFGHVKGAFTGAISNR-SGKFE----LADGGTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred hcCccccccCCCcccC-Ccchh----hcCCCEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 011111000 01122 2346789999999998 67788888888654 569
Q ss_pred EEEecChhHHH--hhhccCHHHHccCceEEecCCCHH----HHHHHHHHHHHHHhhhh---CCCCCHHHHHHHHHhc
Q 002623 387 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVE----DTISILRGLRERYELHH---GVRISDSALVEAAILS 454 (899)
Q Consensus 387 ~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~e----e~~~Il~~~~~~~~~~~---~~~i~~~~l~~~~~ls 454 (899)
+|++|+.+... ..-...+.|..|+..+.|..|+.. ++..+++.++.++...+ .+.++++++..+..+.
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~ 401 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD 401 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 99999876421 111245777778887777777654 44555566766665443 3678999988775543
No 360
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.9e-10 Score=116.04 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=75.5
Q ss_pred CeEEEEccchhhccCCCCCc----hHHHHHHHhhhhcC------------CCeEEEEecChhHHHhhhccCHHHHccCc-
Q 002623 349 QIILFIDEIHTVVGAGATNG----AMDAGNLLKPMLGR------------GELRCIGATTLDEYRKYIEKDPALERRFQ- 411 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~----~~~~~~~L~~~l~~------------~~v~~I~at~~~~~~~~~~~d~al~~Rf~- 411 (899)
.+|+||||||.+...++.++ -..++.-|+++++. .++.+|++.-..- .+--++-|.|.-||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~-sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHV-AKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceec-CChhhcChhhcCCCce
Confidence 56999999999986664322 23466678888863 2678888864321 111156799999998
Q ss_pred eEEecCCCHHHHHHHH----HHHHHHHhhhh-----CCCCCHHHHHHHHHhcc
Q 002623 412 QVYVDQPNVEDTISIL----RGLRERYELHH-----GVRISDSALVEAAILSD 455 (899)
Q Consensus 412 ~i~~~~ps~ee~~~Il----~~~~~~~~~~~-----~~~i~~~~l~~~~~ls~ 455 (899)
.|++...+.++...|| ..+.++|.... .+.|++++++.+++.+-
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 7999999999999998 35666665332 35688999888888763
No 361
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.16 E-value=4.4e-10 Score=118.10 Aligned_cols=145 Identities=13% Similarity=0.183 Sum_probs=92.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||+|||||++++++++.+...+....++++...... . ..+.+.+... .+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--~----------------~~~~~~~~~~--dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--V----------------PEVLEGMEQL--SLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--h----------------HHHHHHhhhC--CEEEEeCh
Confidence 59999999999999999999987544555555555432110 0 0111222222 48999999
Q ss_pred CccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChH
Q 002623 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (899)
Q Consensus 761 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 838 (899)
+.+. +..+..|..++.... ...+..+|+||+..+..+ ..+.|.
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~---------e~g~~~li~ts~~~p~~l--------------------------~~~~~~ 151 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL---------ESGRTRLLITGDRPPRQL--------------------------NLGLPD 151 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH---------HcCCCeEEEeCCCChHHc--------------------------CcccHH
Confidence 9985 344444544443210 012345777777655433 335689
Q ss_pred HHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHh
Q 002623 839 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKF 887 (899)
Q Consensus 839 ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~ 887 (899)
|.+||. .++.+.||+.+++.+++++.....+ ..++++++..+
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-------~~l~~~v~~~L 195 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-------FELPEDVGRFL 195 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHH
Confidence 999996 5899999999999999877554432 45666765444
No 362
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.15 E-value=1.6e-09 Score=110.59 Aligned_cols=183 Identities=19% Similarity=0.337 Sum_probs=125.6
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRL 727 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l 727 (899)
.+.++|-+..++.|.........|... .|+||+|+.|||||++++++...+...+..+|.+.-.++..-.
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pa-----nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~----- 95 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPA-----NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLP----- 95 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCC-----cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHH-----
Confidence 356899999999999998887766542 2699999999999999999999998778888887776663322
Q ss_pred cCCCCCCcccccccchhHHHhhCC-CeEEEEeCCCc-cChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC---
Q 002623 728 IGAPPGYVGYEEGGQLTEVVRRRP-YAVILFDEIEK-AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG--- 802 (899)
Q Consensus 728 ~g~~~~~~g~~~~~~l~~~~~~~~-~~vl~lDEid~-l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~--- 802 (899)
.+...++..| .=|||+|++-- ........|..+||.|--. ...|++|.+|||.-
T Consensus 96 --------------~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~-------~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 96 --------------ELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA-------RPDNVLIYATSNRRHLV 154 (249)
T ss_pred --------------HHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc-------CCCcEEEEEecchhhcc
Confidence 2334444333 34899998642 2345678888888864211 34689999999983
Q ss_pred hhhhhccCCCCCCCc-chHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhc
Q 002623 803 SQYILNMDDETFPKE-TAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 872 (899)
Q Consensus 803 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~ 872 (899)
++.+.+.. +..+.+ ...+.+.+.+ .|..||...|.|.+++.++..+|++.++.+++..+
T Consensus 155 ~E~~~d~~-~~~~~eih~~d~~eEkl----------SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 155 PESFSDRE-DIQDDEIHPSDTIEEKL----------SLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred chhhhhcc-CCCccccCcchHHHHHH----------hHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 11111100 000000 1122222222 37799999999999999999999999998876443
No 363
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.15 E-value=3.5e-10 Score=136.67 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=124.7
Q ss_pred CCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccccc
Q 002623 252 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYR 329 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~ 329 (899)
..|+.++|.++.++++++.+.+ ....++||+|++||||+++|++|++.... .+.+|+.+||..+....
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~~--- 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDEA--- 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChHH---
Confidence 3689999999999999887755 44567999999999999999999987632 25799999998763210
Q ss_pred chHHHHHHHHHHHH-----------HhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------Ce
Q 002623 330 GEFEDRLKAVLKEV-----------TESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 385 (899)
Q Consensus 330 g~~~~~l~~l~~~~-----------~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 385 (899)
+ ...+|... .....+++||||||+.|. .+.+..|.++++.+ ++
T Consensus 392 --~---~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 458 (638)
T PRK11388 392 --L---AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS--------PELQSALLQVLKTGVITRLDSRRLIPVDV 458 (638)
T ss_pred --H---HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceEEeeE
Confidence 0 01111110 112346799999999998 77888888888754 56
Q ss_pred EEEEecChhHHH--hhhccCHHHHccCceEEecCCCHHHH----HHHHHHHHHHHhhhh--CCCCCHHHHHHHHHhc
Q 002623 386 RCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDT----ISILRGLRERYELHH--GVRISDSALVEAAILS 454 (899)
Q Consensus 386 ~~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~ee~----~~Il~~~~~~~~~~~--~~~i~~~~l~~~~~ls 454 (899)
++|+||+.+... ..-...+.|.-|+..+.|..|+..+| ..+++.++.++...+ .+.++++++..+..+.
T Consensus 459 riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 459 RVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred EEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 899999876421 11123456667888777777876555 445566666554333 3568888887775544
No 364
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.15 E-value=3.2e-10 Score=126.07 Aligned_cols=152 Identities=22% Similarity=0.319 Sum_probs=96.1
Q ss_pred CCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE----ccccccccccc
Q 002623 254 LDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD----MGALIAGAKYR 329 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~----~~~l~~~~~~~ 329 (899)
++++++.+..++.++..|.. +.|++|+||||||||++|+.+|..+.....+ ....++.+. ..+++.|..-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 55678888899999888764 5699999999999999999999988432211 112233332 12233333211
Q ss_pred --chH--HHHHHHHHHHHHhh-CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc-----------------------
Q 002623 330 --GEF--EDRLKAVLKEVTES-EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----------------------- 381 (899)
Q Consensus 330 --g~~--~~~l~~l~~~~~~~-~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----------------------- 381 (899)
|-. ...+.+++..+... ..+.+||||||++...+. +..-+..+++
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------hhhhhhhhccccccccccceeeecccccccccc
Confidence 100 01233444555543 357899999998765221 1111222221
Q ss_pred -CCCeEEEEecChhHHHhhhccCHHHHccCceEEecCC
Q 002623 382 -RGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQP 418 (899)
Q Consensus 382 -~~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~p 418 (899)
-.++++|||+|..+ +....+|.||+|||..|.+.+.
T Consensus 322 iP~Nl~IIgTMNt~D-rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 322 VPENVYIIGLMNTAD-RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred CCCCeEEEEecCccc-cchhhccHHHHhhhheEEecCC
Confidence 13789999999887 4555789999999998888763
No 365
>PRK08727 hypothetical protein; Validated
Probab=99.15 E-value=5.8e-10 Score=117.03 Aligned_cols=146 Identities=14% Similarity=0.179 Sum_probs=98.6
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||+|||||+++++++..+...+...+++++.++.... ......+. ...+|+|||+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~l~--~~dlLiIDDi 102 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRL------------------RDALEALE--GRSLVALDGL 102 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhH------------------HHHHHHHh--cCCEEEEeCc
Confidence 499999999999999999999886666666666655432110 01112222 2349999999
Q ss_pred CccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChH
Q 002623 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (899)
Q Consensus 761 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 838 (899)
+.+. +..+..|+.+++... .....+|+|+|..+..| ..+.|+
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~----------~~~~~vI~ts~~~p~~l--------------------------~~~~~d 146 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRAR----------AAGITLLYTARQMPDGL--------------------------ALVLPD 146 (233)
T ss_pred ccccCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChhhh--------------------------hhhhHH
Confidence 9885 445667777765421 01345888888765443 345688
Q ss_pred HHhcc--ceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 839 FMNRV--DEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 839 ll~R~--d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
+.+|| ..++.|++|+.+++..|+++...+. ...++++++..+..
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~-------~l~l~~e~~~~La~ 192 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRR-------GLALDEAAIDWLLT 192 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHc-------CCCCCHHHHHHHHH
Confidence 99996 3689999999999999999866552 23456666544433
No 366
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.14 E-value=4.7e-10 Score=114.27 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=78.0
Q ss_pred CeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-CeEEEEecChhH--------HHhhhccCHHHHccCceEEecCCC
Q 002623 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDE--------YRKYIEKDPALERRFQQVYVDQPN 419 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~~I~at~~~~--------~~~~~~~d~al~~Rf~~i~~~~ps 419 (899)
|+||||||+|.|- .+++..|.+++++. ...+|+|||.-. ...-+.+++.|++|+-.|..-+++
T Consensus 297 PGVLFIDEVhMLD--------iEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD--------IECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhhh--------hHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 7899999999997 88999999999876 556777777421 112246789999999989999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcc
Q 002623 420 VEDTISILRGLRERYELHHGVRISDSALVEAAILSD 455 (899)
Q Consensus 420 ~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~ 455 (899)
.++..+|++...+. .++.++++++..++.+..
T Consensus 369 ~~e~r~Ii~~Ra~~----E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQV----EGLQVEEEALDLLAEIGT 400 (456)
T ss_pred HHHHHHHHHHHHhh----hcceecHHHHHHHHhhcc
Confidence 99999999877766 789999999999988764
No 367
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.14 E-value=7.6e-10 Score=126.29 Aligned_cols=178 Identities=20% Similarity=0.283 Sum_probs=116.4
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC--CCceEEeccccchhhhhh
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAV 724 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~ 724 (899)
..+.++|.++.++.|...+.....+...+ +++++||||||||++++.+++.+... +..+++++|........+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~-----~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~ 102 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPL-----NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAI 102 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCC-----eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHH
Confidence 34678899999999999887654332211 59999999999999999999887432 367899999876543222
Q ss_pred -----hhhcCCCCCCcccccc---cchhHHHhh-CCCeEEEEeCCCccC----hHHHHHHHHhhcCCeeecCCCceeeeC
Q 002623 725 -----SRLIGAPPGYVGYEEG---GQLTEVVRR-RPYAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGRTVSFT 791 (899)
Q Consensus 725 -----~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~l~----~~~~~~Ll~~le~g~~~~~~g~~~~~~ 791 (899)
..+.+.+....+.... ..+...+.. ..+.||+|||+|.+. .+.+..|+..++.. ...
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~ 172 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGA 172 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCC
Confidence 2233322222221111 122233332 345799999999986 44566666655531 112
Q ss_pred CEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccc-eEEecCCCCHHHHHHHHHHHHH
Q 002623 792 NTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQVS 866 (899)
Q Consensus 792 ~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d-~~i~f~~l~~e~i~~I~~~~l~ 866 (899)
++.+|+++|... +...++|.+.+|+. ..|.|+|++.+++..|+...+.
T Consensus 173 ~v~vI~i~~~~~---------------------------~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 173 RIGVIGISSDLT---------------------------FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred eEEEEEEECCcc---------------------------hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 577888888611 02346677777774 4789999999999999998875
No 368
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.14 E-value=4.4e-10 Score=108.48 Aligned_cols=145 Identities=26% Similarity=0.384 Sum_probs=92.6
Q ss_pred cCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHH
Q 002623 258 IGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLK 337 (899)
Q Consensus 258 iG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~ 337 (899)
+|++..+..+...+......+++++||||+|||++++.+++.+.. .+.+++.+++........+.........
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 467788888888877767788999999999999999999999842 2678888887766533221111110000
Q ss_pred HHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc----CCCeEEEEecChhHHHhhhccCHHHHccCc-e
Q 002623 338 AVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----RGELRCIGATTLDEYRKYIEKDPALERRFQ-Q 412 (899)
Q Consensus 338 ~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~~Rf~-~ 412 (899)
...........+.+|+|||++.+.... .......+..... ..++.+|++++.... ..+++.+.+||. .
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 111112223457899999999873110 1223333333332 367899999887753 256788999995 5
Q ss_pred EEec
Q 002623 413 VYVD 416 (899)
Q Consensus 413 i~~~ 416 (899)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 5554
No 369
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.14 E-value=1.5e-09 Score=131.90 Aligned_cols=182 Identities=19% Similarity=0.334 Sum_probs=123.6
Q ss_pred CCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc---
Q 002623 252 GKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA--- 326 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~--- 326 (899)
..|++++|+++.++.+++.+.+ ....++||+||+|||||++|++|+..... .+.+++.+||..+..+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecccCChhHhhh
Confidence 4688999999999999887654 34468999999999999999999987632 36799999998763210
Q ss_pred --------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------Ce
Q 002623 327 --------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 385 (899)
Q Consensus 327 --------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 385 (899)
.+.|....+. ..+. ...+++||||||+.+. .+.+..|..+++.+ ++
T Consensus 446 ~lfg~~~~~~~g~~~~~~-g~le----~a~~GtL~Ldei~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRI-GRFE----LADKSSLFLDEVGDMP--------LELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchh-hHHH----hcCCCeEEEechhhCC--------HHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 0112111111 1222 2346799999999998 67777888887543 57
Q ss_pred EEEEecChhHHH--hhhccCHHHHccCceEEecCCCHHHHHH----HHHHHHHHHhhhhCC---CCCHHHHHHHHHh
Q 002623 386 RCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHGV---RISDSALVEAAIL 453 (899)
Q Consensus 386 ~~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~ee~~~----Il~~~~~~~~~~~~~---~i~~~~l~~~~~l 453 (899)
++|++|+.+... ..-.+.+.|..|+..+.|..|+..++.+ +++.++.++...++. .++++++..+..+
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y 589 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM 589 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 899999876421 1113345677788877778887655544 456666665544432 4788888766443
No 370
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.13 E-value=9.6e-10 Score=128.73 Aligned_cols=182 Identities=15% Similarity=0.239 Sum_probs=123.4
Q ss_pred cCCCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccc---
Q 002623 251 AGKLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAG--- 325 (899)
Q Consensus 251 ~~~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~--- 325 (899)
...|++++|.++.++++++.+.+ ....+++|+|++||||+++|++++..... .+.+|+.+||..+...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~~~e 272 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDDVVE 272 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHHHHH
Confidence 45799999999999999887753 45578999999999999999999876522 2578999999876321
Q ss_pred -----c---cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------C
Q 002623 326 -----A---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------E 384 (899)
Q Consensus 326 -----~---~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 384 (899)
. .|.|..+. -..+|.. ..++.||||||+.|. ...+..|.++++++ +
T Consensus 273 ~elFG~~~~~~~~~~~~-~~g~~e~----a~~GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 273 SELFGHAPGAYPNALEG-KKGFFEQ----ANGGSVLLDEIGEMS--------PRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHhcCCCCCCcCCcccC-CCChhhh----cCCCEEEEeChhhCC--------HHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 0 01111100 0112222 246789999999998 66777788887653 5
Q ss_pred eEEEEecChhHHH--hhhccCHHHHccCceEEecCCCHHH----HHHHHHHHHHHHhhhhC---CCCCHHHHHHHHH
Q 002623 385 LRCIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVED----TISILRGLRERYELHHG---VRISDSALVEAAI 452 (899)
Q Consensus 385 v~~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~ee----~~~Il~~~~~~~~~~~~---~~i~~~~l~~~~~ 452 (899)
+++|++|+.+... ..-...+.|..|+..+.+..|+..+ +..+++.++.++...++ ..++++++..+..
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~ 416 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 416 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc
Confidence 6899988776421 1112457788898877777776554 44455666666655554 3688888876643
No 371
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.13 E-value=1.3e-09 Score=107.52 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=96.3
Q ss_pred CchHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc-------------cCCCeEEEEEcccccc
Q 002623 259 GRDDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA-------------LMNRKLISLDMGALIA 324 (899)
Q Consensus 259 G~~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~-------------l~~~~~~~l~~~~l~~ 324 (899)
||+..++.+...+......| +||+||+|+||+++|..+|+.+.+...... .....++.++......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78888888888887777777 599999999999999999999987543211 1234455554332200
Q ss_pred cccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhh
Q 002623 325 GAKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 399 (899)
Q Consensus 325 ~~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~ 399 (899)
.-..+.++.+...+.. .++.-|++|||+|.|. .+++|.|+..||+. ++++|.+|+...
T Consensus 81 -----~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 81 -----SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------EEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp -----SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred -----hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------HHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 0112345555555443 2345699999999998 88999999999976 788888888775
Q ss_pred hccCHHHHccCceEEecCCC
Q 002623 400 IEKDPALERRFQQVYVDQPN 419 (899)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~ps 419 (899)
.+-|.+++||..+.|++.|
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 6889999999999988754
No 372
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=2.1e-09 Score=117.75 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=114.6
Q ss_pred HHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcc-----cc---------CCCeEEEEEcccccccccc
Q 002623 263 EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ-----AL---------MNRKLISLDMGALIAGAKY 328 (899)
Q Consensus 263 ~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~-----~l---------~~~~~~~l~~~~l~~~~~~ 328 (899)
..+++++. .+.+..+||+||+|+|||++|+.+|+.+.+..... .. ....++.+.... +.+
T Consensus 11 ~~~~~~~~--~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~- 84 (328)
T PRK05707 11 LWQQLAGR--GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADK- 84 (328)
T ss_pred HHHHHHHC--CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCC-
Confidence 34444442 33344578999999999999999999998743110 00 111344442210 001
Q ss_pred cchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhHHHhhhccC
Q 002623 329 RGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDEYRKYIEKD 403 (899)
Q Consensus 329 ~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d 403 (899)
.-..+.++.+.+.+... ++.-|++||++|.+. ..+.|.|++.||+ ++..+|.+|+... .+.
T Consensus 85 -~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll 150 (328)
T PRK05707 85 -TIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMN--------RNAANALLKSLEEPSGDTVLLLISHQPS-----RLL 150 (328)
T ss_pred -CCCHHHHHHHHHHHhhccccCCCeEEEECChhhCC--------HHHHHHHHHHHhCCCCCeEEEEEECChh-----hCc
Confidence 11234466666555532 345588999999998 7889999999997 4788888888776 688
Q ss_pred HHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHH
Q 002623 404 PALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 404 ~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld 472 (899)
|.+++||+.+.|.+|+.++....|..... ..+++....++.++.+ .|.+|..+.+
T Consensus 151 ~TI~SRc~~~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~G------sp~~A~~l~~ 205 (328)
T PRK05707 151 PTIKSRCQQQACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGG------SPLRALQLHE 205 (328)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCC------CHHHHHHHHC
Confidence 99999999999999999988776653210 2344445555666643 4556666554
No 373
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.4e-10 Score=122.36 Aligned_cols=180 Identities=19% Similarity=0.277 Sum_probs=122.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC--CCceEEeccccchhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~ 725 (899)
.+.+.+.++.+.++...+...-.|..+. +++++||||||||.+++.+.+.+... +..+++|||..+.....+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~-----n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPS-----NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCc-----cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 3457888888999988887765555432 59999999999999999999999432 2227999999997765442
Q ss_pred ----hhcCCCCCCcccccc---cchhHHHhh-CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEE
Q 002623 726 ----RLIGAPPGYVGYEEG---GQLTEVVRR-RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 726 ----~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 797 (899)
.-+|..| ..|.... ..+.+.+.. ...-||+|||+|.+...-.+.|+.++....-. ..++.+|+
T Consensus 91 ~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~vi~ 161 (366)
T COG1474 91 SKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSIIA 161 (366)
T ss_pred HHHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEEEE
Confidence 2223222 2232221 233344443 44569999999999877657777777543211 24678888
Q ss_pred ecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccc-eEEecCCCCHHHHHHHHHHHHHHH
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d-~~i~f~~l~~e~i~~I~~~~l~~~ 868 (899)
.+|.- .+ ...|+|-+.+++. ..|.|+|++.+++..|+....+.-
T Consensus 162 i~n~~-------------------~~--------~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 162 VSNDD-------------------KF--------LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred EeccH-------------------HH--------HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 88871 11 2344555555553 369999999999999999888753
No 374
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=4.9e-09 Score=113.82 Aligned_cols=182 Identities=15% Similarity=0.185 Sum_probs=118.0
Q ss_pred hHHHHHHHHHhhcCCCCC-cEEEcCCCCcHHHHHHHHHHHhhcCCCccc--c---------CCCeEEEEEcccccccccc
Q 002623 261 DDEIRRCIQILSRRTKNN-PVLIGEPGVGKTAISEGLAQRIVQGDVPQA--L---------MNRKLISLDMGALIAGAKY 328 (899)
Q Consensus 261 ~~~i~~~~~~l~~~~~~~-~LL~Gp~G~GKT~la~~la~~l~~~~~p~~--l---------~~~~~~~l~~~~l~~~~~~ 328 (899)
+...+.+...+.+.+..| +||+||+|+||+++|.++|+.+.+....+. . ....++.+....-..|.+.
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 345666777666655555 789999999999999999999987542110 0 1112333321100011000
Q ss_pred -cchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhcc
Q 002623 329 -RGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEK 402 (899)
Q Consensus 329 -~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~ 402 (899)
..-..+.++++.+.+... ++.-|++||++|.+. ..+.|.|++.||+. +.++|.+|+... .+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~l 156 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------RAACNALLKTLEEPSPGRYLWLISAQPA-----RL 156 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------HHHHHHHHHHhhCCCCCCeEEEEECChh-----hC
Confidence 011244566666655432 234699999999997 77899999999965 777888777765 67
Q ss_pred CHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHH
Q 002623 403 DPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLV 471 (899)
Q Consensus 403 d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~ll 471 (899)
-|.+++||+.+.|..|+.++....|.. .+ +++.....++.++.+ .|..|..++
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~--------~~--~~~~~a~~~~~l~~G------~p~~A~~~~ 209 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLA--------QG--VSERAAQEALDAARG------HPGLAAQWL 209 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHH--------cC--CChHHHHHHHHHcCC------CHHHHHHHh
Confidence 899999999999999999887766642 12 344444455666643 455665555
No 375
>PRK05642 DNA replication initiation factor; Validated
Probab=99.09 E-value=1.3e-09 Score=114.34 Aligned_cols=146 Identities=14% Similarity=0.238 Sum_probs=99.5
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||+|||||+|++++++.+...+...+++++.++.... ..+.+.+... .+|+||++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~------------------~~~~~~~~~~--d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG------------------PELLDNLEQY--ELVCLDDL 106 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh------------------HHHHHhhhhC--CEEEEech
Confidence 489999999999999999998876556677778777653210 1223334444 38999999
Q ss_pred CccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChH
Q 002623 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (899)
Q Consensus 761 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 838 (899)
+... +..+..|+.+++.- . ..+..+|+|++..+..+ ..+.|.
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~--~--------~~g~~ilits~~~p~~l--------------------------~~~~~~ 150 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRL--R--------DSGRRLLLAASKSPREL--------------------------PIKLPD 150 (234)
T ss_pred hhhcCChHHHHHHHHHHHHH--H--------hcCCEEEEeCCCCHHHc--------------------------CccCcc
Confidence 9775 45567788877641 0 11345677777654332 334688
Q ss_pred HHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 839 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 839 ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
+.+||. .++.+.+++.+++..+++......+ ..++++++..+.+
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-------~~l~~ev~~~L~~ 196 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-------LHLTDEVGHFILT 196 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHH
Confidence 999994 5788999999999999986554422 4466676555443
No 376
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=6.5e-10 Score=117.97 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhh-hhhhhhcCCC-C-
Q 002623 656 PAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK-HAVSRLIGAP-P- 732 (899)
Q Consensus 656 ~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~-~~~~~l~g~~-~- 732 (899)
...+.+..++...+... .+||+||+|+||+.+|..+|+.++..+.+ -.|..+... |.....+.+. .
T Consensus 4 ~~~~~L~~~i~~~rl~H--------AyLf~G~~G~Gk~~lA~~~A~~llC~~~~---~~c~~~~~~~HPD~~~i~p~~~~ 72 (290)
T PRK05917 4 AAWEALIQRVRDQKVPS--------AIILHGQDLSNLSARAYELASLILKETSP---EAAYKISQKIHPDIHEFSPQGKG 72 (290)
T ss_pred HHHHHHHHHHHcCCcCe--------eEeeECCCCCcHHHHHHHHHHHHhCCCCc---cHHHHHhcCCCCCEEEEecCCCC
Confidence 34456666665433221 39999999999999999999999653322 123221110 1111111111 1
Q ss_pred CCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhc
Q 002623 733 GYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (899)
Q Consensus 733 ~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~ 808 (899)
..++.++.+.+.+.+.. .++.|++||++|+++.+.+|+||+.||+ +..+++||++|+.
T Consensus 73 ~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~------- 134 (290)
T PRK05917 73 RLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAK------- 134 (290)
T ss_pred CcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCC-------
Confidence 11334444445555543 4468999999999999999999999998 5568888888887
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC
Q 002623 809 MDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD 853 (899)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~ 853 (899)
...+.|.++||| +.+.|+++.
T Consensus 135 -----------------------~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 135 -----------------------PQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred -----------------------hhhCcHHHHhcc-eEEEccchh
Confidence 678899999999 999999765
No 377
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.08 E-value=1.5e-11 Score=112.58 Aligned_cols=108 Identities=24% Similarity=0.290 Sum_probs=62.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccc---------hHHHHHHHHHHHHHhhCC
Q 002623 278 NPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRG---------EFEDRLKAVLKEVTESEG 348 (899)
Q Consensus 278 ~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g---------~~~~~l~~l~~~~~~~~~ 348 (899)
|+||.|+||+|||++|+++|+.+ +..+.++.+..-...+...| +++-.-.-+|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT---------
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh--------
Confidence 68999999999999999999998 88888887653211111111 0000000010
Q ss_pred CeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEEEecChhHHHhhhccCHHHHccCc
Q 002623 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTLDEYRKYIEKDPALERRFQ 411 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I~at~~~~~~~~~~~d~al~~Rf~ 411 (899)
..|+++|||++.. ...+..|+++|+++ .+++|+|.|+.++...+.++.++++||-
T Consensus 63 ~~ill~DEiNrap--------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAP--------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred hceeeecccccCC--------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 2399999999987 66788899998754 4678999999888888899999999994
No 378
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.07 E-value=6.7e-09 Score=109.55 Aligned_cols=195 Identities=19% Similarity=0.227 Sum_probs=129.4
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc--------------cccccccchHHHHHHHH
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL--------------IAGAKYRGEFEDRLKAV 339 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l--------------~~~~~~~g~~~~~l~~l 339 (899)
.+..|+||+|++|.|||++++.+.+.-.....+ .....+++.+.+..- ....+...........+
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~ 137 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-DAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV 137 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-CCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence 344789999999999999999999876433222 223568888886542 12211112222211122
Q ss_pred HHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccCceEEecCCC
Q 002623 340 LKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPN 419 (899)
Q Consensus 340 ~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps 419 (899)
+. +...-+.-+|+|||+|.+... .......+.|.|+.+...-++.+|+..+.+-+.- +.-|+.+.+||..+.++...
T Consensus 138 ~~-llr~~~vrmLIIDE~H~lLaG-s~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a-l~~D~QLa~RF~~~~Lp~W~ 214 (302)
T PF05621_consen 138 LR-LLRRLGVRMLIIDEFHNLLAG-SYRKQREFLNALKFLGNELQIPIVGVGTREAYRA-LRTDPQLASRFEPFELPRWE 214 (302)
T ss_pred HH-HHHHcCCcEEEeechHHHhcc-cHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH-hccCHHHHhccCCccCCCCC
Confidence 22 222234569999999998632 2223467788888887888899999999888764 56799999999999998874
Q ss_pred -HHHHHHHHHHHHHHHhhhhCCCCCHHH-HHHHHHhcccccCCCCChhhHHHHHHHHHHhh
Q 002623 420 -VEDTISILRGLRERYELHHGVRISDSA-LVEAAILSDRYISGRFLPDKAIDLVDEAAAKL 478 (899)
Q Consensus 420 -~ee~~~Il~~~~~~~~~~~~~~i~~~~-l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~ 478 (899)
.++...++..+...+.......+.+.. ...+...|.+.+ .....++..|+..+
T Consensus 215 ~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i------G~l~~ll~~aA~~A 269 (302)
T PF05621_consen 215 LDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI------GELSRLLNAAAIAA 269 (302)
T ss_pred CCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch------HHHHHHHHHHHHHH
Confidence 356667777777766655555555544 467888887654 35667776666544
No 379
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.5e-09 Score=119.79 Aligned_cols=163 Identities=22% Similarity=0.306 Sum_probs=110.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEc
Q 002623 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFID 355 (899)
Q Consensus 276 ~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iD 355 (899)
.++++|+||+|.|||+|.++++.++....+ +..++.+....+... +.-...+.-..-|++.. .. -+|+||
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~-----~a~v~y~~se~f~~~--~v~a~~~~~~~~Fk~~y-~~--dlllID 182 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGP-----NARVVYLTSEDFTND--FVKALRDNEMEKFKEKY-SL--DLLLID 182 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCC-----CceEEeccHHHHHHH--HHHHHHhhhHHHHHHhh-cc--Ceeeec
Confidence 567789999999999999999999866432 567777765443211 11111111111122222 11 289999
Q ss_pred cchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccCc---eEEecCCCHHHHHHHHHHHHH
Q 002623 356 EIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ---QVYVDQPNVEDTISILRGLRE 432 (899)
Q Consensus 356 Ei~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf~---~i~~~~ps~ee~~~Il~~~~~ 432 (899)
+|+.+.+.... ......++..+.+.|. .+|.|+...+. ..-.+.|.|++||. .+.+.+|+.+.+..||+...+
T Consensus 183 Diq~l~gk~~~--qeefFh~FN~l~~~~k-qIvltsdr~P~-~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 183 DIQFLAGKERT--QEEFFHTFNALLENGK-QIVLTSDRPPK-ELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hHhHhcCChhH--HHHHHHHHHHHHhcCC-EEEEEcCCCch-hhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 99999865433 3556677777778877 55555543331 12346699999996 589999999999999998666
Q ss_pred HHhhhhCCCCCHHHHHHHHHhccc
Q 002623 433 RYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 433 ~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
. .++.++++++..++....+
T Consensus 259 ~----~~~~i~~ev~~~la~~~~~ 278 (408)
T COG0593 259 D----RGIEIPDEVLEFLAKRLDR 278 (408)
T ss_pred h----cCCCCCHHHHHHHHHHhhc
Confidence 5 7999999999988877653
No 380
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.06 E-value=2.6e-09 Score=126.39 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=81.5
Q ss_pred CCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-----------------------CeEEEEecChhHHHhhhccCH
Q 002623 348 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRCIGATTLDEYRKYIEKDP 404 (899)
Q Consensus 348 ~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~~I~at~~~~~~~~~~~d~ 404 (899)
.+++|||||++.|. ...+..|+++|+.+ ++++|+++|+..+ ..++|
T Consensus 217 ngGtL~Ldei~~L~--------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l---~~l~~ 285 (608)
T TIGR00764 217 HKGVLYIDEIKTMP--------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL---EGMHP 285 (608)
T ss_pred CCCEEEEEChHhCC--------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH---hhcCH
Confidence 46799999999987 56777888887532 5688999998754 36799
Q ss_pred HHHccCc---e-EEe--cCC-CHHHHHHHHHHHHHHHhhh-hCCCCCHHHHHHHHHhcccccCCCCC----hhhHHHHHH
Q 002623 405 ALERRFQ---Q-VYV--DQP-NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYISGRFL----PDKAIDLVD 472 (899)
Q Consensus 405 al~~Rf~---~-i~~--~~p-s~ee~~~Il~~~~~~~~~~-~~~~i~~~~l~~~~~ls~~~i~~~~~----p~~a~~lld 472 (899)
.|++||. . +.| ..| +.+.+.++++.+...+... .--.++++++..+.+.+.|.-..+.. .....+++.
T Consensus 286 ~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 286 ALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 9999997 2 333 223 5666666666665555443 22368999999998877665444433 456666777
Q ss_pred HHHHhh
Q 002623 473 EAAAKL 478 (899)
Q Consensus 473 ~a~~~~ 478 (899)
.|...+
T Consensus 366 ~A~~iA 371 (608)
T TIGR00764 366 AAGDIA 371 (608)
T ss_pred HHHHHH
Confidence 765443
No 381
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.05 E-value=1.7e-09 Score=123.52 Aligned_cols=154 Identities=16% Similarity=0.252 Sum_probs=101.3
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCC--CCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 758 (899)
+++|+||+|+|||+|++++++.+... +..++++++.++..... ..+ ... ....+.+.++. ..+|+||
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~-~~~-~~~-------~~~~~~~~~~~--~dlLiiD 206 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV-NAL-RNN-------KMEEFKEKYRS--VDLLLID 206 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH-HHH-HcC-------CHHHHHHHHHh--CCEEEEe
Confidence 58999999999999999999988543 56788888877643211 111 100 01122333333 3599999
Q ss_pred CCCccCh--HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 002623 759 EIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (899)
Q Consensus 759 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (899)
|++.+.. ..++.|+.+++.-. ..+..+|+|+|..+..+ ..+.
T Consensus 207 Di~~l~~~~~~~~~l~~~~n~~~----------~~~~~iiits~~~p~~l--------------------------~~l~ 250 (405)
T TIGR00362 207 DIQFLAGKERTQEEFFHTFNALH----------ENGKQIVLTSDRPPKEL--------------------------PGLE 250 (405)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHH----------HCCCCEEEecCCCHHHH--------------------------hhhh
Confidence 9998754 35677777775310 01234677777654332 2356
Q ss_pred hHHHhccce--EEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhh
Q 002623 837 PEFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFC 888 (899)
Q Consensus 837 p~ll~R~d~--~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 888 (899)
+.+.+||.. ++.|++|+.+++..|++..+...+ ..++++++..++
T Consensus 251 ~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~-------~~l~~e~l~~ia 297 (405)
T TIGR00362 251 ERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG-------LELPDEVLEFIA 297 (405)
T ss_pred hhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHH
Confidence 778899953 799999999999999999887743 344555544443
No 382
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.05 E-value=3.5e-09 Score=115.14 Aligned_cols=208 Identities=22% Similarity=0.278 Sum_probs=125.7
Q ss_pred CCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE---------------
Q 002623 253 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL--------------- 317 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l--------------- 317 (899)
.|.-++|++.--..++...-.....++|+-|+.|+||||++++|+..|....+- .||+|-.=
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V---~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVV---IGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCcccee---cCCCCCCCCCChhhhhHHHHhhc
Confidence 344578998755544444344566789999999999999999999998543210 12211000
Q ss_pred -Ecccccccc-------cccchHHHHH------HHHHHH--------HHhhCCCeEEEEccchhhccCCCCCchHHHHHH
Q 002623 318 -DMGALIAGA-------KYRGEFEDRL------KAVLKE--------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNL 375 (899)
Q Consensus 318 -~~~~l~~~~-------~~~g~~~~~l------~~l~~~--------~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~ 375 (899)
+...+.... --.|.+++++ .+.+++ +......+||||||+..|. ..+++.
T Consensus 92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--------d~lvd~ 163 (423)
T COG1239 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--------DHLVDA 163 (423)
T ss_pred cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--------HHHHHH
Confidence 000000000 0122333321 111110 0012346799999999997 778999
Q ss_pred HhhhhcCC---------------CeEEEEecChhHHHhhhccCHHHHccCc-eEEecCC-CHHHHHHHHHHHHHHHhhhh
Q 002623 376 LKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQP-NVEDTISILRGLRERYELHH 438 (899)
Q Consensus 376 L~~~l~~~---------------~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~p-s~ee~~~Il~~~~~~~~~~~ 438 (899)
|+.+++.| ++.+|||+|+.+- ++-|.|+.||. .|.+..| +.+++.+|++.-... .
T Consensus 164 LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG----eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f-~--- 235 (423)
T COG1239 164 LLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG----ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF-E--- 235 (423)
T ss_pred HHHHHHhCCceeeeCceeeccCccEEEEeecCcccc----ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh-h---
Confidence 99999765 7789999999974 78899999998 7888887 788999998755542 1
Q ss_pred CCCCCHHH----------HHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhh
Q 002623 439 GVRISDSA----------LVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME 481 (899)
Q Consensus 439 ~~~i~~~~----------l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~ 481 (899)
..++.. +..-.-.+...+....+++.+...+-.+|.+..+.
T Consensus 236 --~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~ 286 (423)
T COG1239 236 --AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVD 286 (423)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccC
Confidence 111111 11111112334455666777777777777665544
No 383
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.03 E-value=1.4e-09 Score=112.82 Aligned_cols=155 Identities=18% Similarity=0.291 Sum_probs=99.5
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcC--CCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 758 (899)
+++++||+|+|||+|.+++++.+.. .+..++++++.++........--+ ....+...++ ...+|+||
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~---------~~~~~~~~~~--~~DlL~iD 104 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDG---------EIEEFKDRLR--SADLLIID 104 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTT---------SHHHHHHHHC--TSSEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcc---------cchhhhhhhh--cCCEEEEe
Confidence 4899999999999999999988742 466788999888755421110000 0012223333 34599999
Q ss_pred CCCccChH--HHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 002623 759 EIEKAHSD--VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (899)
Q Consensus 759 Eid~l~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (899)
+++.+... .+..|..+++.-. ..+..+|+|++..+..+ ..+.
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~~P~~l--------------------------~~~~ 148 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDRPPSEL--------------------------SGLL 148 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS-TTTT--------------------------TTS-
T ss_pred cchhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCCCCccc--------------------------cccC
Confidence 99998754 5788888776411 12345778887755433 3467
Q ss_pred hHHHhccce--EEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 837 PEFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 837 p~ll~R~d~--~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
|.|.+||.. ++.+.+|+.++...|+++.+...+ ..++++++..+..
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~-------~~l~~~v~~~l~~ 196 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG-------IELPEEVIEYLAR 196 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---------S-HHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHH
Confidence 889999954 899999999999999999988765 3366777555544
No 384
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6e-10 Score=122.56 Aligned_cols=147 Identities=23% Similarity=0.336 Sum_probs=96.9
Q ss_pred CCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE--------------
Q 002623 252 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL-------------- 317 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l-------------- 317 (899)
..|.||+||+...+.+.- ...+..|+||+||||||||.+|+.+...+..-..++.+.-..+.++
T Consensus 176 ~D~~DV~GQ~~AKrAlei--AAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~r 253 (490)
T COG0606 176 PDFKDVKGQEQAKRALEI--AAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHR 253 (490)
T ss_pred cchhhhcCcHHHHHHHHH--HHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeC
Confidence 367889999976665544 3567789999999999999999999877644333332222222222
Q ss_pred ---------Ecccccccccc--cchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC---
Q 002623 318 ---------DMGALIAGAKY--RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--- 383 (899)
Q Consensus 318 ---------~~~~l~~~~~~--~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--- 383 (899)
.+.++++|... .|+ +. ...++||||||+-.+- ..+.+.|++-||+|
T Consensus 254 PFr~PHHsaS~~aLvGGG~~p~PGe-----------Is-LAH~GVLFLDElpef~--------~~iLe~LR~PLE~g~i~ 313 (490)
T COG0606 254 PFRAPHHSASLAALVGGGGVPRPGE-----------IS-LAHNGVLFLDELPEFK--------RSILEALREPLENGKII 313 (490)
T ss_pred CccCCCccchHHHHhCCCCCCCCCc-----------ee-eecCCEEEeeccchhh--------HHHHHHHhCccccCcEE
Confidence 12222322210 111 11 1346799999998776 67889999999987
Q ss_pred ------------CeEEEEecChhH--------------------HHhhhccCHHHHccCc-eEEecCCCHHH
Q 002623 384 ------------ELRCIGATTLDE--------------------YRKYIEKDPALERRFQ-QVYVDQPNVED 422 (899)
Q Consensus 384 ------------~v~~I~at~~~~--------------------~~~~~~~d~al~~Rf~-~i~~~~ps~ee 422 (899)
++.+|++||+.+ |.+ .+...|++||+ .|.++.++..+
T Consensus 314 IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~--klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 314 ISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLN--KLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred EEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHH--HhhHHHHhhhhheecccCCCHHH
Confidence 556788888542 322 45688999998 78888776443
No 385
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.3e-10 Score=125.05 Aligned_cols=138 Identities=20% Similarity=0.378 Sum_probs=97.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhh--------CCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR--------RPY 752 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~--------~~~ 752 (899)
.+|||||||||||.+||.|.+.+.... | -.+|..++. ++++|.....+ +.|+.-.++ ..-
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAre-P-KIVNGPeIL-----~KYVGeSE~Nv-----R~LFaDAEeE~r~~g~~SgL 325 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNARE-P-KIVNGPEIL-----NKYVGESEENV-----RKLFADAEEEQRRLGANSGL 325 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCC-C-cccCcHHHH-----HHhhcccHHHH-----HHHHHhHHHHHHhhCccCCc
Confidence 399999999999999999999995432 2 335666664 34455443322 233332221 123
Q ss_pred eEEEEeCCCc-------------cChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcch
Q 002623 753 AVILFDEIEK-------------AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETA 819 (899)
Q Consensus 753 ~vl~lDEid~-------------l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~ 819 (899)
.|++|||||. .+..+.|+||.-||.- -...|+.+|.-||.
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV---------eqLNNILVIGMTNR------------------ 378 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV---------EQLNNILVIGMTNR------------------ 378 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH---------HhhhcEEEEeccCc------------------
Confidence 5999999996 3467999999999851 13468999999998
Q ss_pred HHHHHHHHHHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 820 YETIKQRVMDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 820 ~~~~~~~~~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
++.++.+|+ +||...+.+.-|++.-..+|++..-+++.
T Consensus 379 ------------~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMr 418 (744)
T KOG0741|consen 379 ------------KDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMR 418 (744)
T ss_pred ------------hhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhh
Confidence 555556666 89988888888888877788877777765
No 386
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=8e-10 Score=120.93 Aligned_cols=141 Identities=19% Similarity=0.257 Sum_probs=92.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc------hh-hhhhhhhcCCC-----CC----Ccccccccchh
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY------ME-KHAVSRLIGAP-----PG----YVGYEEGGQLT 744 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~------~~-~~~~~~l~g~~-----~~----~~g~~~~~~l~ 744 (899)
.+||+||+|+|||++|+.+|+.+......--...|... .. .|.....+... .| .++.+..+.+.
T Consensus 23 A~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l~ 102 (325)
T PRK08699 23 AWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREII 102 (325)
T ss_pred EEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHHH
Confidence 49999999999999999999998532110000112221 10 01111111110 01 13344445555
Q ss_pred HHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchH
Q 002623 745 EVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAY 820 (899)
Q Consensus 745 ~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~ 820 (899)
+.+.. ..+.|+++|+++.+++..++.|++.||+. ..++.||++|+.
T Consensus 103 ~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-----------~~~~~~Ilvth~------------------- 152 (325)
T PRK08699 103 DNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-----------PPQVVFLLVSHA------------------- 152 (325)
T ss_pred HHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-----------cCCCEEEEEeCC-------------------
Confidence 55553 34679999999999999999999999972 134667777766
Q ss_pred HHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 821 ETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 821 ~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
...+.|.+.+|| .++.|+|++.+++...+..
T Consensus 153 -----------~~~ll~ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 153 -----------ADKVLPTIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -----------hHhChHHHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 456778899999 9999999999988766643
No 387
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.4e-08 Score=111.57 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=119.4
Q ss_pred hHHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccc--------------cCCCeEEEEEccccccc
Q 002623 261 DDEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA--------------LMNRKLISLDMGALIAG 325 (899)
Q Consensus 261 ~~~i~~~~~~l~~~~~-~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~--------------l~~~~~~~l~~~~l~~~ 325 (899)
+...+++++.+...+. ...||+||+|+||+++|.++|+.+.+...... .....++.+.... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~ 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---G 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---c
Confidence 3456667777666444 45579999999999999999999987432110 0112233332210 0
Q ss_pred ccccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhh
Q 002623 326 AKYRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYI 400 (899)
Q Consensus 326 ~~~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~ 400 (899)
.. .-..+.++.+.+.+.. .++.-|++||++|.+. ..+.|.|++.||+. +.++|.+|...+
T Consensus 85 ~~--~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~----- 149 (334)
T PRK07993 85 KS--SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------DAAANALLKTLEEPPENTWFFLACREPA----- 149 (334)
T ss_pred cc--cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----
Confidence 00 1123345555555543 2345699999999998 78899999999964 677788777765
Q ss_pred ccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHH
Q 002623 401 EKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 401 ~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld 472 (899)
.+-|.++|||+.+.|++|+.++....|.. ...++++....++.++.+ .|.+|.++++
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G------~~~~Al~l~~ 206 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAG------APGAALALLQ 206 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCC------CHHHHHHHhc
Confidence 68899999999999999999887766541 123556656666777754 4556666654
No 388
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=4.5e-08 Score=105.53 Aligned_cols=182 Identities=19% Similarity=0.208 Sum_probs=108.1
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE-E--cc--c----cc--ccccccch----HHHHHHH
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL-D--MG--A----LI--AGAKYRGE----FEDRLKA 338 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l-~--~~--~----l~--~~~~~~g~----~~~~l~~ 338 (899)
.+...++|+||+|+|||++++.++..+..+.+ .+..+ + .+ . +. -|....+. ....+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-------~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERV-------VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-------EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 34456899999999999999999998743221 11111 1 10 0 00 01111121 1122333
Q ss_pred HHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc----CC-CeEEEEecChhHHHhhhcc--CHHHHccCc
Q 002623 339 VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG----RG-ELRCIGATTLDEYRKYIEK--DPALERRFQ 411 (899)
Q Consensus 339 l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~----~~-~v~~I~at~~~~~~~~~~~--d~al~~Rf~ 411 (899)
.+......+.+.+|+|||+|.+. .+..+.|+.+.+ .+ .+.+|.+.++. ....+.. ...+.+|+.
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~ 184 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLT--------PELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRII 184 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCC--------HHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhhee
Confidence 33333334567899999999986 233444443332 22 34455555443 2222221 235777875
Q ss_pred -eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHh
Q 002623 412 -QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 412 -~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~ 477 (899)
.+.+++.+.++...++...+..........+++++++.+.+.|.++ |.....+++.+...
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~------p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI------PRLINILCDRLLLS 245 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc------ccHHHHHHHHHHHH
Confidence 7889999999999999888876543344578999999999999764 44555566665443
No 389
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.00 E-value=3e-09 Score=121.39 Aligned_cols=152 Identities=18% Similarity=0.310 Sum_probs=100.5
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||+|+|||+|++++++.+...+..++++++..+.... ... +.. + ....+....+ ...||+|||+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~-~~~-l~~-----~--~~~~f~~~~~--~~dvLiIDDi 211 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL-VSA-IRS-----G--EMQRFRQFYR--NVDALFIEDI 211 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH-HHH-Hhc-----c--hHHHHHHHcc--cCCEEEEcch
Confidence 499999999999999999999886556778888877664321 111 110 0 0011111222 3459999999
Q ss_pred CccCh--HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChH
Q 002623 761 EKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPE 838 (899)
Q Consensus 761 d~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 838 (899)
+.+.. ..++.|+.+++.-. + .+..+|+|||..+..+ ..+.+.
T Consensus 212 q~l~~k~~~qeelf~l~N~l~--~--------~~k~IIlts~~~p~~l--------------------------~~l~~r 255 (445)
T PRK12422 212 EVFSGKGATQEEFFHTFNSLH--T--------EGKLIVISSTCAPQDL--------------------------KAMEER 255 (445)
T ss_pred hhhcCChhhHHHHHHHHHHHH--H--------CCCcEEEecCCCHHHH--------------------------hhhHHH
Confidence 99854 45677777665310 0 1235777777644332 346788
Q ss_pred HHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHH
Q 002623 839 FMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVK 886 (899)
Q Consensus 839 ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~ 886 (899)
+.+||. .++.+.+|+.+++..|+++.+...+ ..++++++.-
T Consensus 256 L~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-------~~l~~evl~~ 298 (445)
T PRK12422 256 LISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-------IRIEETALDF 298 (445)
T ss_pred HHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHH
Confidence 899995 6899999999999999998887643 3455666543
No 390
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.00 E-value=1.2e-09 Score=114.64 Aligned_cols=198 Identities=15% Similarity=0.257 Sum_probs=107.1
Q ss_pred CcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcc-ccCCCeEEEE-Ecccc------------
Q 002623 257 VIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ-ALMNRKLISL-DMGAL------------ 322 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~-~l~~~~~~~l-~~~~l------------ 322 (899)
++||+.+++.+.+.+.......++|+||.|+|||++++.+.+.+....... .......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999988777778899999999999999999999883321100 0000000000 00000
Q ss_pred -c----ccc-------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhc-cCCCCC-chHHHHHHHhhhhcCCCeEEE
Q 002623 323 -I----AGA-------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVV-GAGATN-GAMDAGNLLKPMLGRGELRCI 388 (899)
Q Consensus 323 -~----~~~-------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~-~~~~~~-~~~~~~~~L~~~l~~~~v~~I 388 (899)
. .+. .........+..++..+.....++||+|||++.+. ...... -.....+++.......++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 160 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV 160 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE
Confidence 0 000 01123345566777777765556999999999998 222111 112333444443345566666
Q ss_pred EecChhH-HHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccc
Q 002623 389 GATTLDE-YRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRY 457 (899)
Q Consensus 389 ~at~~~~-~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~ 457 (899)
.+++... +..+....+.+..|+..+.+++.+.++..++++...+.. .++.++++.++.+..++.++
T Consensus 161 ~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 161 ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 5555443 333344556677888889999999999999988766542 12245899999998888763
No 391
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.00 E-value=4.4e-09 Score=122.89 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=121.8
Q ss_pred CCCcCchHHHHHHHHHhhcCC------------CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEE---EEc
Q 002623 255 DPVIGRDDEIRRCIQILSRRT------------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS---LDM 319 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l~~~~------------~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~---l~~ 319 (899)
..++|++...+.++-.+.... ..|+||+|+||+|||++++++++..... .+.. .++
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~---------~~~~~~~~~~ 273 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA---------VYTTGKGSSA 273 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc---------eEcCCCCCCc
Confidence 348888876555555543321 1389999999999999999999986321 1111 011
Q ss_pred ccccccc---cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------
Q 002623 320 GALIAGA---KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------- 383 (899)
Q Consensus 320 ~~l~~~~---~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------- 383 (899)
..+.... ...|++. +. ..+.....+++|+|||++.+. ...+..|..+|+.+
T Consensus 274 ~~l~~~~~~~~~~g~~~--~~---~G~l~~A~~Gil~iDEi~~l~--------~~~q~~L~e~me~~~i~i~k~G~~~~l 340 (509)
T smart00350 274 VGLTAAVTRDPETREFT--LE---GGALVLADNGVCCIDEFDKMD--------DSDRTAIHEAMEQQTISIAKAGITTTL 340 (509)
T ss_pred CCccccceEccCcceEE--ec---CccEEecCCCEEEEechhhCC--------HHHHHHHHHHHhcCEEEEEeCCEEEEe
Confidence 1121100 0111110 00 001112346799999999987 56677788888643
Q ss_pred --CeEEEEecChhHH--------HhhhccCHHHHccCce--EEecCCCHHHHHHHHHHHHHHHhhh-------hCCCCCH
Q 002623 384 --ELRCIGATTLDEY--------RKYIEKDPALERRFQQ--VYVDQPNVEDTISILRGLRERYELH-------HGVRISD 444 (899)
Q Consensus 384 --~v~~I~at~~~~~--------~~~~~~d~al~~Rf~~--i~~~~ps~ee~~~Il~~~~~~~~~~-------~~~~i~~ 444 (899)
++.+|+|+|+.+- ..-+.+++++++||+. +....|+.+...+|++.++...... ....++.
T Consensus 341 ~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (509)
T smart00350 341 NARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQ 420 (509)
T ss_pred cCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCH
Confidence 5678999997641 0113789999999983 4567789998889988876542211 1123566
Q ss_pred HHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhh
Q 002623 445 SALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLK 479 (899)
Q Consensus 445 ~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~ 479 (899)
+.+.....++..++.-. +++.+.+.+.......+
T Consensus 421 ~~l~~yi~~ar~~~~P~-ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 421 EFLRKYIAYAREKIKPK-LSEEAAEKLVKAYVDLR 454 (509)
T ss_pred HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHhc
Confidence 66766666666533222 56667666666555444
No 392
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.9e-08 Score=109.42 Aligned_cols=149 Identities=14% Similarity=0.186 Sum_probs=103.1
Q ss_pred HHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHhhcCCCcc-----cc---------CCCeEEEEEcccccccc
Q 002623 262 DEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ-----AL---------MNRKLISLDMGALIAGA 326 (899)
Q Consensus 262 ~~i~~~~~~l~~~~~-~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~-----~l---------~~~~~~~l~~~~l~~~~ 326 (899)
...+.+...+.+.+. ...||+||+|+||+++|+.+|+.+.+.+... .. ....++.+... .|.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~ 85 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---DNK 85 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---cCC
Confidence 344556666655444 4567999999999999999999998743211 00 11223334221 111
Q ss_pred cccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhc
Q 002623 327 KYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIE 401 (899)
Q Consensus 327 ~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~ 401 (899)
.. ..+.++++.+.+... ++.-|++||++|.+. ..++|.|++.||+. ++.+|.+|+..+ .
T Consensus 86 -~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~-----~ 149 (325)
T PRK06871 86 -DI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA-----A 149 (325)
T ss_pred -CC--CHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----h
Confidence 11 233456665555432 345699999999998 77899999999865 677787777765 6
Q ss_pred cCHHHHccCceEEecCCCHHHHHHHHHH
Q 002623 402 KDPALERRFQQVYVDQPNVEDTISILRG 429 (899)
Q Consensus 402 ~d~al~~Rf~~i~~~~ps~ee~~~Il~~ 429 (899)
+-|.+++||+.+.|.+|+.++..+.|..
T Consensus 150 llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 150 LLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred CchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 8899999999999999999988777654
No 393
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.9e-09 Score=114.93 Aligned_cols=157 Identities=13% Similarity=0.223 Sum_probs=102.9
Q ss_pred ccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCC----ceE-Eeccccch-hhhhhhh
Q 002623 653 GQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEE----ALV-RIDMSEYM-EKHAVSR 726 (899)
Q Consensus 653 Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~----~~~-~i~~~~~~-~~~~~~~ 726 (899)
+|..+++.+..++...+... .+||+|| +||+++|+.+|+.++..+. ++- .-.|..+. ..|..-.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~h--------AyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNH--------AYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCcce--------eeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 45667777777776543221 4999996 6899999999999864321 110 01111111 1111111
Q ss_pred hcCCCCCCcccccccchhHHHhh----CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC
Q 002623 727 LIGAPPGYVGYEEGGQLTEVVRR----RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (899)
Q Consensus 727 l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~ 802 (899)
++......++.++.+.+...+.. .++.|++||++|+|+....|+||+.||+ +..+++||++|+.
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~- 143 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTND- 143 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECC-
Confidence 22221112333444444444443 3468999999999999999999999998 4567889998877
Q ss_pred hhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHH
Q 002623 803 SQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVR 862 (899)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~ 862 (899)
...+.|.++||| ++|+|++ +.+++.+++.
T Consensus 144 -----------------------------~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 144 -----------------------------ENKVLPTIKSRT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -----------------------------hhhCchHHHHcc-eeeeCCC-cHHHHHHHHH
Confidence 677889999999 9999977 6677666654
No 394
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.99 E-value=2.6e-09 Score=122.97 Aligned_cols=155 Identities=18% Similarity=0.159 Sum_probs=96.1
Q ss_pred CCCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcccc------------------CCCe
Q 002623 252 GKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL------------------MNRK 313 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l------------------~~~~ 313 (899)
..|.+++|++..++.+.-.+ ....+++|+||||+|||++++.++..+........+ ...+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~P 266 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRP 266 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCC
Confidence 36788999988766554433 455789999999999999999999866321111111 1222
Q ss_pred EEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC----------
Q 002623 314 LISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------- 383 (899)
Q Consensus 314 ~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------- 383 (899)
|...+.+....+. .-|....+- ..+ ....+++|||||++.+. ..+++.|.+.|+.+
T Consensus 267 f~~p~~s~s~~~~-~ggg~~~~p-G~i----~lA~~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~g~~ 332 (499)
T TIGR00368 267 FRSPHHSASKPAL-VGGGPIPLP-GEI----SLAHNGVLFLDELPEFK--------RSVLDALREPIEDGSISISRASAK 332 (499)
T ss_pred ccccccccchhhh-hCCccccch-hhh----hccCCCeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEecCcc
Confidence 3222222110000 000000000 011 12346799999999887 77889999999765
Q ss_pred -----CeEEEEecChhHHHh------------------hhccCHHHHccCc-eEEecCCCHHH
Q 002623 384 -----ELRCIGATTLDEYRK------------------YIEKDPALERRFQ-QVYVDQPNVED 422 (899)
Q Consensus 384 -----~v~~I~at~~~~~~~------------------~~~~d~al~~Rf~-~i~~~~ps~ee 422 (899)
++++|+++|+.+... ...+.++|++||+ .+.++.++.++
T Consensus 333 ~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 333 IFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred eeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 468999999753111 1257899999999 67888776554
No 395
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.98 E-value=2.9e-09 Score=123.09 Aligned_cols=154 Identities=17% Similarity=0.295 Sum_probs=100.0
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCC--CCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 758 (899)
+++|+||||+|||+|++++++.+... +..++++++.++.... ... +... ....+.+.++. ..+|+||
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~-~~~-~~~~-------~~~~~~~~~~~--~dlLiiD 218 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF-VNA-LRNN-------TMEEFKEKYRS--VDVLLID 218 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH-HHH-HHcC-------cHHHHHHHHhc--CCEEEEe
Confidence 59999999999999999999998543 4567888888774331 111 1100 00122233333 4599999
Q ss_pred CCCccCh--HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 002623 759 EIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (899)
Q Consensus 759 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (899)
|++.+.. ..+..|+.+++.-. + .+..+|+|+|..+..+ ..+.
T Consensus 219 Di~~l~~~~~~~~~l~~~~n~l~--~--------~~~~iiits~~~p~~l--------------------------~~l~ 262 (450)
T PRK00149 219 DIQFLAGKERTQEEFFHTFNALH--E--------AGKQIVLTSDRPPKEL--------------------------PGLE 262 (450)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHH--H--------CCCcEEEECCCCHHHH--------------------------HHHH
Confidence 9998753 35666776665310 0 1123666777654332 2256
Q ss_pred hHHHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhh
Q 002623 837 PEFMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFC 888 (899)
Q Consensus 837 p~ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 888 (899)
+.+.+||. .++.|.+|+.+++..|++..+...+ ..++++++..+.
T Consensus 263 ~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~-------~~l~~e~l~~ia 309 (450)
T PRK00149 263 ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG-------IDLPDEVLEFIA 309 (450)
T ss_pred HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHH
Confidence 78889995 4899999999999999999887532 345566654443
No 396
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.96 E-value=8.6e-09 Score=123.16 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=104.8
Q ss_pred CCCCcCchHHHHHHHHHhhcC---------------------CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCC
Q 002623 254 LDPVIGRDDEIRRCIQILSRR---------------------TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR 312 (899)
Q Consensus 254 l~~iiG~~~~i~~~~~~l~~~---------------------~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~ 312 (899)
...|.|++...+.++-.|-.. +..|+||+|+||||||.+++++++...+.. ...|.
T Consensus 449 aP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~ 525 (915)
T PTZ00111 449 APSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGK 525 (915)
T ss_pred CCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCC
Confidence 344888888777776665221 123899999999999999999998654322 11244
Q ss_pred eEEEEEcccccc-cccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--------
Q 002623 313 KLISLDMGALIA-GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------- 383 (899)
Q Consensus 313 ~~~~l~~~~l~~-~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------- 383 (899)
++..+++..... .....|++... ..+.....+++++|||++.+. ...+..|.++|+.+
T Consensus 526 ~~s~vgLTa~~~~~d~~tG~~~le-----~GaLvlAdgGtL~IDEidkms--------~~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 526 SSSSVGLTASIKFNESDNGRAMIQ-----PGAVVLANGGVCCIDELDKCH--------NESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred CCccccccchhhhcccccCccccc-----CCcEEEcCCCeEEecchhhCC--------HHHHHHHHHHHhCCEEEEecCC
Confidence 555555544321 00011221100 011112346799999999997 56777788888643
Q ss_pred -------CeEEEEecChhHHH--------hhhccCHHHHccCce--EEecCCCHHHHHHHHHHHHHH
Q 002623 384 -------ELRCIGATTLDEYR--------KYIEKDPALERRFQQ--VYVDQPNVEDTISILRGLRER 433 (899)
Q Consensus 384 -------~v~~I~at~~~~~~--------~~~~~d~al~~Rf~~--i~~~~ps~ee~~~Il~~~~~~ 433 (899)
++.+|+|+|+...+ .-+.+++++++||+. +.++.|+.+.=..|..+++..
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 57899999986322 235688999999984 466777777666666666654
No 397
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.96 E-value=4.8e-09 Score=107.37 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=76.9
Q ss_pred eEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHH
Q 002623 753 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 832 (899)
Q Consensus 753 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (899)
+||||||++.++-+.+..|.+.+|+ ++ ..++|++||.|-..+.+ .+... .
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~-----------d~-~PiiimaTNrgit~iRG---Tn~~S---------------p 339 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALEN-----------DM-APIIIMATNRGITRIRG---TNYRS---------------P 339 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhh-----------cc-CcEEEEEcCCceEEeec---CCCCC---------------C
Confidence 8999999999999999999999996 22 24678999998766644 22222 5
Q ss_pred hcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHh
Q 002623 833 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKF 887 (899)
Q Consensus 833 ~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~ 887 (899)
..++-.|++|. .+|...|++.+|+.+|++..+.+... .++++++..+
T Consensus 340 hGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv-------~m~~~A~d~L 386 (454)
T KOG2680|consen 340 HGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDV-------EMNPDALDLL 386 (454)
T ss_pred CCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhcc-------ccCHHHHHHH
Confidence 67888999999 99999999999999999999887663 4556664443
No 398
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.96 E-value=8.4e-10 Score=114.71 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=108.3
Q ss_pred cceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCC-CCc--eEEeccccchhhhhhh
Q 002623 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNT-EEA--LVRIDMSEYMEKHAVS 725 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~-~~~--~~~i~~~~~~~~~~~~ 725 (899)
..+++|++.+..+.+... .++-| |+|||||||+|||....+.|..+++. +.. +..++.++-.+...+.
T Consensus 41 ~dv~~~~ei~st~~~~~~-------~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr 111 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSG-------MPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVR 111 (360)
T ss_pred hhHhcCCchhhHHHHhcc-------CCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchH
Confidence 457888888877766521 12333 79999999999999999999999652 110 1112222211110000
Q ss_pred hhcCCCCCCcccccccchhHHHh-------hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEe
Q 002623 726 RLIGAPPGYVGYEEGGQLTEVVR-------RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (899)
Q Consensus 726 ~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 798 (899)
..-..+...+ .+...+++|||+|.+..+.||+|.++++. ...++.|+..
T Consensus 112 -------------~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t~n~rF~ii 167 (360)
T KOG0990|consen 112 -------------QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YTANTRFATI 167 (360)
T ss_pred -------------HHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH-----------hccceEEEEe
Confidence 0001111111 23567999999999999999999998876 3357888888
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+|. ...+.|++.+|| ..++|.|++.+++.....+.++.-.
T Consensus 168 ~n~------------------------------~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 168 SNP------------------------------PQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred ccC------------------------------hhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 888 678899999999 8899999998888888777766443
No 399
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.6e-08 Score=110.78 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=101.9
Q ss_pred HHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcc---c------------cCCCeEEEEEccccc----
Q 002623 263 EIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQ---A------------LMNRKLISLDMGALI---- 323 (899)
Q Consensus 263 ~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~---~------------l~~~~~~~l~~~~l~---- 323 (899)
.-++++.. ..+-+..+||+||+|+||+++|+.+|+.+.+..... . .....++.+......
T Consensus 9 ~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~ 87 (342)
T PRK06964 9 DWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAP 87 (342)
T ss_pred HHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccc
Confidence 33444443 345556778999999999999999999998754210 0 011223333221100
Q ss_pred -------------cccc---c-cchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC
Q 002623 324 -------------AGAK---Y-RGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG 383 (899)
Q Consensus 324 -------------~~~~---~-~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~ 383 (899)
.|.+ + ..-..+.++.+...+... ++.-|++||++|.+. ..+.|.|+..||+.
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEP 159 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------VAAANALLKTLEEP 159 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------HHHHHHHHHHhcCC
Confidence 0000 0 011234456666555432 345699999999998 77899999999864
Q ss_pred --CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHH
Q 002623 384 --ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILR 428 (899)
Q Consensus 384 --~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~ 428 (899)
++++|.+|+..+ .+.|.+++||+.+.|++|+.++..+.|.
T Consensus 160 p~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 160 PPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred CcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 777888888776 6889999999999999999998887765
No 400
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.95 E-value=4.7e-09 Score=121.49 Aligned_cols=142 Identities=18% Similarity=0.331 Sum_probs=95.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcC--CCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 758 (899)
+++|+|++|+|||+|+++|++.+.. .+..++++++.++....... +.. + ....+.+.++. ..+|+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~------~--~~~~f~~~y~~--~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD------G--KGDSFRRRYRE--MDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh------c--cHHHHHHHhhc--CCEEEEe
Confidence 3999999999999999999998843 35677888888775432111 100 0 00122233333 3599999
Q ss_pred CCCccCh--HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 002623 759 EIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (899)
Q Consensus 759 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (899)
||+.+.. ..++.|+.+++.-. + .+..+|+|||..+..+ ..+.
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~--e--------~gk~IIITSd~~P~eL--------------------------~~l~ 428 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH--N--------ANKQIVLSSDRPPKQL--------------------------VTLE 428 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH--h--------cCCCEEEecCCChHhh--------------------------hhcc
Confidence 9998753 34666777765411 0 1234667888865433 3467
Q ss_pred hHHHhccce--EEecCCCCHHHHHHHHHHHHHHHH
Q 002623 837 PEFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 837 p~ll~R~d~--~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
+.|.+||.. ++.+.+++.+....|+++.+...+
T Consensus 429 ~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~ 463 (617)
T PRK14086 429 DRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ 463 (617)
T ss_pred HHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC
Confidence 888999944 789999999999999998876643
No 401
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.95 E-value=9.8e-09 Score=111.59 Aligned_cols=96 Identities=21% Similarity=0.192 Sum_probs=66.9
Q ss_pred CeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEEEecChhHHHhh--hccCHHHHccCceE
Q 002623 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTLDEYRKY--IEKDPALERRFQQV 413 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I~at~~~~~~~~--~~~d~al~~Rf~~i 413 (899)
.+|+-|+|+.... .+.++-|+.+++++ +..+|+++|..+|..+ .....+|++||..|
T Consensus 237 rGi~~f~Ei~K~~--------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i 308 (361)
T smart00763 237 RGILEFVEMFKAD--------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKV 308 (361)
T ss_pred CceEEEeehhcCC--------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEE
Confidence 3577777877665 67777777777654 3468999999999765 35579999999999
Q ss_pred EecCC-CHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHh
Q 002623 414 YVDQP-NVEDTISILRGLRERYELHHGVRISDSALVEAAIL 453 (899)
Q Consensus 414 ~~~~p-s~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~l 453 (899)
.++.| +.++-.+|.+..+..-. ..++.+.+.+++.++..
T Consensus 309 ~vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 309 KVPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALF 348 (361)
T ss_pred eCCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHH
Confidence 99988 67777788877765411 12344555555544443
No 402
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=2.2e-09 Score=114.72 Aligned_cols=150 Identities=17% Similarity=0.330 Sum_probs=95.2
Q ss_pred HHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHh
Q 002623 266 RCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE 345 (899)
Q Consensus 266 ~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~ 345 (899)
.+++.+.. .+.++||+||+|||||++++.+.+.+... ..-+..++++...... .+..+++....
T Consensus 24 ~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~Tts~--------~~q~~ie~~l~ 87 (272)
T PF12775_consen 24 YLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQTTSN--------QLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTHHHH--------HHHHCCCTTEC
T ss_pred HHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCCCHH--------HHHHHHhhcEE
Confidence 34444433 45689999999999999999877655211 2234566666543221 12222211111
Q ss_pred ----------hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--------------CeEEEEecChhHHHhhhc
Q 002623 346 ----------SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIE 401 (899)
Q Consensus 346 ----------~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~~I~at~~~~~~~~~~ 401 (899)
.+...|+||||++.- ..+..|.....++|+++++.| ++.+|+++++.. +...
T Consensus 88 k~~~~~~gP~~~k~lv~fiDDlN~p--~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~ 163 (272)
T PF12775_consen 88 KRRGRVYGPPGGKKLVLFIDDLNMP--QPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNP 163 (272)
T ss_dssp ECTTEEEEEESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--S
T ss_pred cCCCCCCCCCCCcEEEEEecccCCC--CCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCC
Confidence 134579999999854 344456677889999999754 778999998753 3346
Q ss_pred cCHHHHccCceEEecCCCHHHHHHHHHHHHHHHh
Q 002623 402 KDPALERRFQQVYVDQPNVEDTISILRGLRERYE 435 (899)
Q Consensus 402 ~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~ 435 (899)
+++.|.|.|..+.++.|+.+....|...++..+.
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHHHT
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhhhc
Confidence 8899999999999999999999999998888654
No 403
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4e-09 Score=125.73 Aligned_cols=121 Identities=25% Similarity=0.396 Sum_probs=93.5
Q ss_pred CcCchHHHHHHHHHhhcCC--------CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc------
Q 002623 257 VIGRDDEIRRCIQILSRRT--------KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL------ 322 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~~~--------~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l------ 322 (899)
|+||++.+..+.+.+.+.+ ...++|.||+|||||-||++||..+.. ....++.+||+++
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg-------se~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG-------SEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC-------CccceEEechhhhhhhhhc
Confidence 9999999999999874422 234699999999999999999999944 3568999999973
Q ss_pred -cccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEE
Q 002623 323 -IAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCI 388 (899)
Q Consensus 323 -~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I 388 (899)
.+..+|+|..+.. .+ .++.+..+.+|++||||+... .++++.|++++++| +++||
T Consensus 637 igsp~gyvG~e~gg--~L-teavrrrP~sVVLfdeIEkAh--------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I 705 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGG--QL-TEAVKRRPYSVVLFEEIEKAH--------PDVLNILLQLLDRGRLTDSHGREVDFKNAIFI 705 (898)
T ss_pred cCCCcccccchhHH--HH-HHHHhcCCceEEEEechhhcC--------HHHHHHHHHHHhcCccccCCCcEeeccceEEE
Confidence 2334477754432 33 444445678999999999887 88999999999876 66788
Q ss_pred EecChhH
Q 002623 389 GATTLDE 395 (899)
Q Consensus 389 ~at~~~~ 395 (899)
+|+|...
T Consensus 706 MTsn~~~ 712 (898)
T KOG1051|consen 706 MTSNVGS 712 (898)
T ss_pred Eecccch
Confidence 8877653
No 404
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.93 E-value=9.2e-10 Score=121.35 Aligned_cols=204 Identities=12% Similarity=0.111 Sum_probs=110.7
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcCCC----CCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLS----DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~----~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (899)
+..+.+.+...|+|.+.++..|.-++-....... ..++.+ |+||+|.||+|||.+.+.+++... ..++.+.
T Consensus 15 ~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~i-hiLlvGdpg~gKS~ll~~~~~~~p----r~v~~~g 89 (331)
T PF00493_consen 15 FDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNI-HILLVGDPGTGKSQLLKYVAKLAP----RSVYTSG 89 (331)
T ss_dssp HHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S---EEEECSCHHCHHHHHHCCCCT-S----SEEEEEC
T ss_pred HHHHHHHhCCcCcCcHHHHHHHHHHHHhcccccccccccccccc-ceeeccchhhhHHHHHHHHHhhCC----ceEEECC
Confidence 4455666778899988877776554432111100 012333 899999999999999998876652 2333333
Q ss_pred ccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-CCE
Q 002623 716 SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNT 793 (899)
Q Consensus 716 ~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~ 793 (899)
...... .+...........+-..-.+++-.+.+||++|||+|++..+....|+++||.+.++... |..... .++
T Consensus 90 ~~~s~~----gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~ 165 (331)
T PF00493_consen 90 KGSSAA----GLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARC 165 (331)
T ss_dssp CGSTCC----CCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---
T ss_pred CCcccC----CccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchh
Confidence 322111 11111000000000001135667788899999999999999999999999999988876 555555 589
Q ss_pred EEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEec-CCCCHHHHHHHHHHHHHHHH
Q 002623 794 VIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF-QPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 794 iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f-~~l~~e~i~~I~~~~l~~~~ 869 (899)
.|++++|+....+.... . ..+ .-.++++|++|||.++.+ .+++.+.=..|.++.++...
T Consensus 166 svlaa~NP~~g~~~~~~---~----~~~----------ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~ 225 (331)
T PF00493_consen 166 SVLAAANPKFGRYDPNK---S----LSE----------NINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHR 225 (331)
T ss_dssp EEEEEE--TT--S-TTS--------CGC----------CT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT-
T ss_pred hhHHHHhhhhhhcchhh---h----hHH----------hcccchhhHhhcCEEEEeccccccccccccceEEEeccc
Confidence 99999999543332100 0 000 124788999999997665 66665555566666666543
No 405
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.92 E-value=7.9e-09 Score=130.28 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhh---cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccc--------c
Q 002623 261 DDEIRRCIQILS---RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY--------R 329 (899)
Q Consensus 261 ~~~i~~~~~~l~---~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~--------~ 329 (899)
.+.+++.+.-+. ..++.++||.||+|+|||++++.+|+.. +.++++++......-..| .
T Consensus 422 T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~----------g~~~vrinnhehtd~qeyig~y~~~~~ 491 (1856)
T KOG1808|consen 422 TPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARAT----------GKNIVRINNHEHTDLQEYIGTYVADDN 491 (1856)
T ss_pred cHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHh----------ccCceehhccccchHHHHHHhhhcCCC
Confidence 344444444332 2455689999999999999999999998 888888875554322222 3
Q ss_pred chHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC----------------CeEEEEecCh
Q 002623 330 GEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG----------------ELRCIGATTL 393 (899)
Q Consensus 330 g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~----------------~v~~I~at~~ 393 (899)
|.+..+-..++..++ .++.+|+||++... .++.+.|.++++.. +..+. +|..
T Consensus 492 g~l~freg~LV~Alr---~G~~~vlD~lnla~--------~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lf-atqn 559 (1856)
T KOG1808|consen 492 GDLVFREGVLVQALR---NGDWIVLDELNLAP--------HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLF-ATQN 559 (1856)
T ss_pred CCeeeehhHHHHHHH---hCCEEEeccccccc--------hHHHHHHHhhhhhhccccccccceeeccCcchhhh-hhcc
Confidence 344444444555553 35699999999876 77888898888642 22223 3333
Q ss_pred hH--HHhhhccCHHHHccCceEEecCCCHHHHHHHHH
Q 002623 394 DE--YRKYIEKDPALERRFQQVYVDQPNVEDTISILR 428 (899)
Q Consensus 394 ~~--~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~ 428 (899)
++ |.....+..+|++||..++|..-+.++...|+.
T Consensus 560 ~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~ 596 (1856)
T KOG1808|consen 560 PPGTYGGRKILSRALRNRFIELHFDDIGEEELEEILE 596 (1856)
T ss_pred CccccchhhhhhhcccccchhhhhhhcCchhhhhhhc
Confidence 33 555566778899999888887777777666654
No 406
>PRK12377 putative replication protein; Provisional
Probab=98.92 E-value=4e-09 Score=110.58 Aligned_cols=106 Identities=20% Similarity=0.383 Sum_probs=71.2
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||+||.+|++.+...+..++.+...++....... +... .....+...+... .+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--~~~~------~~~~~~l~~l~~~--dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--YDNG------QSGEKFLQELCKV--DLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--Hhcc------chHHHHHHHhcCC--CEEEEcCC
Confidence 599999999999999999999997767777777777765432111 1110 0001223333344 49999999
Q ss_pred --CccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 761 --EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 761 --d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
+..++..++.|+++++... . ...-.|+|||.+.+.+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~-~---------~~~ptiitSNl~~~~l 210 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRT-A---------SMRSVGMLTNLNHEAM 210 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-h---------cCCCEEEEcCCCHHHH
Confidence 5566778899999998621 1 1233578999976554
No 407
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.92 E-value=1.2e-08 Score=120.57 Aligned_cols=197 Identities=18% Similarity=0.167 Sum_probs=122.5
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchH--HHHHHHH-H---HHHHhhC
Q 002623 274 RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF--EDRLKAV-L---KEVTESE 347 (899)
Q Consensus 274 ~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~--~~~l~~l-~---~~~~~~~ 347 (899)
....++||.|+||||||++|++|++.+.. ..+|+.++.+... ....|.. +..+..- + .......
T Consensus 14 p~~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 14 PSLGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred CCcceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeeeC
Confidence 34578999999999999999999998722 2356666542111 1111211 1000000 0 0001113
Q ss_pred CCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC---------------CeEEEEecChhHHHhhhccCHHHHccCc-
Q 002623 348 GQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ- 411 (899)
Q Consensus 348 ~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~~~~~~~d~al~~Rf~- 411 (899)
.+++||||||+.+. ...++.|..+|+.+ ++++|+|+|+.+... .+.++|..||.
T Consensus 84 ~~GvL~lDEi~rl~--------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf~l 153 (589)
T TIGR02031 84 PRGVLYVDMANLLD--------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRLAL 153 (589)
T ss_pred CCCcEeccchhhCC--------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhccC
Confidence 45799999999998 77888899999765 368999988875322 57899999998
Q ss_pred eEEecC-CCHHHHHHHHHHHHHHHh-------------------hhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHH
Q 002623 412 QVYVDQ-PNVEDTISILRGLRERYE-------------------LHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLV 471 (899)
Q Consensus 412 ~i~~~~-ps~ee~~~Il~~~~~~~~-------------------~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~ll 471 (899)
.|.+.. |+.+++.+|++.....+. ....+.++++.+.+++.++-.+--. -+...+.++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~--s~Ra~i~~~ 231 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS--GHRADLFAV 231 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC--CccHHHHHH
Confidence 555554 577888888876543221 1235778888888888887543221 234555666
Q ss_pred HHHHHhhhhh--ccCCchhHHHH
Q 002623 472 DEAAAKLKME--ITSKPTALDEI 492 (899)
Q Consensus 472 d~a~~~~~~~--~~~~~~~l~~~ 492 (899)
.-|.+.+.+. ....++++...
T Consensus 232 r~ArA~Aal~gr~~V~~~Dv~~a 254 (589)
T TIGR02031 232 RAAKAHAALHGRTEVTEEDLKLA 254 (589)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHH
Confidence 6655555443 34455555544
No 408
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.91 E-value=1.4e-08 Score=116.47 Aligned_cols=158 Identities=15% Similarity=0.275 Sum_probs=104.8
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhc--CCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh-hCCCeEEEE
Q 002623 681 SFMFMGPTGVGKTELAKALASYMF--NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILF 757 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~--~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~l 757 (899)
+++|+|++|+|||+|++++++.+. ..+..++++++.++....... ++... +.+..... -....+|+|
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~--l~~~~--------~~~~~~~~~~~~~dvLiI 212 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI--LQKTH--------KEIEQFKNEICQNDVLII 212 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH--HHHhh--------hHHHHHHHHhccCCEEEE
Confidence 499999999999999999999774 345677888887765432111 11100 11222222 123459999
Q ss_pred eCCCccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcC
Q 002623 758 DEIEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIF 835 (899)
Q Consensus 758 DEid~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (899)
||++.+. +..++.|+.+++.-. + .+..+|+|+|..+.. ...+
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~--~--------~~k~iIltsd~~P~~--------------------------l~~l 256 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFI--E--------NDKQLFFSSDKSPEL--------------------------LNGF 256 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHH--H--------cCCcEEEECCCCHHH--------------------------Hhhc
Confidence 9999887 567777777776411 1 123578888875533 2456
Q ss_pred ChHHHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 836 RPEFMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 836 ~p~ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
.+.+.+||. .++.+.+|+.+++.+|+++.+...+. ...++++++..+..
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl-----~~~l~~evl~~Ia~ 307 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI-----KQEVTEEAINFISN 307 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHH
Confidence 788889994 48999999999999999999886431 12467777555443
No 409
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.91 E-value=6.9e-09 Score=116.33 Aligned_cols=225 Identities=16% Similarity=0.224 Sum_probs=138.4
Q ss_pred HHHHhHHHhhccceeccchHHHHHHHHHHHH---HcC-CCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEe
Q 002623 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRS---RAG-LSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI 713 (899)
Q Consensus 638 ~~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~---~~~-~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i 713 (899)
..+..+...++..|.|++.++.-|.-.+--. .++ ...-++-+ |++++|.||+||+.+-++.+..+.+ .-++.-
T Consensus 334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDi-nv~iVGDPgt~KSQfLk~v~~fsPR--~vYtsG 410 (764)
T KOG0480|consen 334 NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDI-NVCIVGDPGTGKSQFLKAVCAFSPR--SVYTSG 410 (764)
T ss_pred hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCc-eEEEeCCCCccHHHHHHHHhccCCc--ceEecC
Confidence 3466788889999999999998887766311 111 11123333 8999999999999999999987732 111111
Q ss_pred ccccchhhhhhhhhcCCCCCCcccccccch---hHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceee
Q 002623 714 DMSEYMEKHAVSRLIGAPPGYVGYEEGGQL---TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVS 789 (899)
Q Consensus 714 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l---~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~ 789 (899)
+.+.- + |-...-+.-++.+.+ .+++--+.+||..|||+|||+-.-|-+|+.+||...+.... |-...
T Consensus 411 kaSSa------A---GLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aT 481 (764)
T KOG0480|consen 411 KASSA------A---GLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVAT 481 (764)
T ss_pred ccccc------c---cceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEe
Confidence 11111 0 100000000111111 34555678899999999999998899999999998887766 54444
Q ss_pred e-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceE-EecCCCCHHHHHHHHHHHHHH
Q 002623 790 F-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 790 ~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~-i~f~~l~~e~i~~I~~~~l~~ 867 (899)
. .++-||+++||-. |.+++ ...+.+. =.+++++++|||.+ |-++.+++..=..|.++.++.
T Consensus 482 LnARtSIlAAANPv~--------GhYdR---~ktl~eN------i~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 482 LNARTSILAAANPVG--------GHYDR---KKTLREN------INMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred ecchhhhhhhcCCcC--------Ccccc---ccchhhh------cCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 4 3677888888833 22222 1222221 25789999999984 666777755545666666654
Q ss_pred HHhhcccC-C--CccCHHHHHHhhcccc
Q 002623 868 SKVSWIYS-P--WHFNYEMLVKFCYLAF 892 (899)
Q Consensus 868 ~~~~~~~~-~--~~~~~~~l~~~~~~~~ 892 (899)
.. .+... - -.++.+.+.+|-.++.
T Consensus 545 h~-~i~~~~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 545 HR-GIDDATERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred hc-cccccccccccccHHHHHHHHHHHH
Confidence 32 22221 1 2566777766665543
No 410
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=3.6e-08 Score=106.99 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccc-c------------CCCeEEEEEccccccccc
Q 002623 262 DEIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA-L------------MNRKLISLDMGALIAGAK 327 (899)
Q Consensus 262 ~~i~~~~~~l~~~~~-~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~-l------------~~~~~~~l~~~~l~~~~~ 327 (899)
+..+++...+.+.+. ...||+||.|+||+++|+.+|+.+.+.+.+.. . ....++.+.... .| +
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~-~ 86 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--EG-K 86 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--CC-C
Confidence 344555555545444 45789999999999999999999987542211 0 112344443211 01 1
Q ss_pred ccchHHHHHHHHHHHHHh---hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhcc
Q 002623 328 YRGEFEDRLKAVLKEVTE---SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEK 402 (899)
Q Consensus 328 ~~g~~~~~l~~l~~~~~~---~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~ 402 (899)
.. ..+.++.+...+.. .++.-|++||++|.+. ..+.|.|+..||+. +..+|..|+... .+
T Consensus 87 ~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~l 151 (319)
T PRK06090 87 SI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--------ESASNALLKTLEEPAPNCLFLLVTHNQK-----RL 151 (319)
T ss_pred cC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----hC
Confidence 11 12334555444432 2345699999999998 77899999999865 677888777765 67
Q ss_pred CHHHHccCceEEecCCCHHHHHHHHH
Q 002623 403 DPALERRFQQVYVDQPNVEDTISILR 428 (899)
Q Consensus 403 d~al~~Rf~~i~~~~ps~ee~~~Il~ 428 (899)
-|.++|||+.+.|++|+.++..+.+.
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 89999999999999999998777664
No 411
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=5.7e-09 Score=108.34 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=89.5
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchh-------hhhhhhhcCCCCCCcccccccchhHHHhh----
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYME-------KHAVSRLIGAPPGYVGYEEGGQLTEVVRR---- 749 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~-------~~~~~~l~g~~~~~~g~~~~~~l~~~~~~---- 749 (899)
.+||+||+|+||..+|.++|+.+...+.. -.|+.... .|....++......++.++.+.+...+..
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~---~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKAN---GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 49999999999999999999998543321 12332211 11111111111223444444555554432
Q ss_pred -CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHH
Q 002623 750 -RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVM 828 (899)
Q Consensus 750 -~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (899)
..+.|++|+++|+++....|+||..||+ +..+++||++|+.
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~--------------------------- 127 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRN--------------------------- 127 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECC---------------------------
Confidence 2468999999999999999999999998 5578999999887
Q ss_pred HHHHhcCChHHHhccceEEecCCC
Q 002623 829 DAARSIFRPEFMNRVDEYIVFQPL 852 (899)
Q Consensus 829 ~~~~~~~~p~ll~R~d~~i~f~~l 852 (899)
...+.|.++||| +.+.|+++
T Consensus 128 ---~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 128 ---ENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred ---hHhCchHhhhhe-eeeecCCh
Confidence 678889999999 88888887
No 412
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.88 E-value=5e-08 Score=113.23 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=121.7
Q ss_pred CCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc----
Q 002623 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 326 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---- 326 (899)
.+..++|.+..++.+.+.+.+ ....+++|+|++||||+++|+++...... .+.+++.+||..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChHHHHHH
Confidence 456789999888887776653 34578999999999999999999987522 25689999998763110
Q ss_pred -------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeE
Q 002623 327 -------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (899)
Q Consensus 327 -------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 386 (899)
.+.|..... ...+. ...+++||||||+.|. ...+..|.++++.+ +++
T Consensus 210 lfg~~~~~~~~~~~~~-~g~~~----~a~~gtl~l~~i~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (445)
T TIGR02915 210 LFGYEKGAFTGAVKQT-LGKIE----YAHGGTLFLDEIGDLP--------LNLQAKLLRFLQERVIERLGGREEIPVDVR 276 (445)
T ss_pred hcCCCCCCcCCCccCC-CCcee----ECCCCEEEEechhhCC--------HHHHHHHHHHHhhCeEEeCCCCceeeeceE
Confidence 000100000 00111 2346799999999998 67788888888644 578
Q ss_pred EEEecChhHHHh--hhccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhhC---CCCCHHHHHHHHHhc
Q 002623 387 CIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHG---VRISDSALVEAAILS 454 (899)
Q Consensus 387 ~I~at~~~~~~~--~~~~d~al~~Rf~~i~~~~ps~ee~~----~Il~~~~~~~~~~~~---~~i~~~~l~~~~~ls 454 (899)
+|++|+.+.... .-...+.|..|+..+.|..|+..++. .+++.+++++...++ ..++++++..+....
T Consensus 277 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (445)
T TIGR02915 277 IVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA 353 (445)
T ss_pred EEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCC
Confidence 999998764211 11345677788887777777765544 455667666655443 468888887775543
No 413
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.86 E-value=1.7e-09 Score=103.89 Aligned_cols=130 Identities=24% Similarity=0.384 Sum_probs=85.6
Q ss_pred cCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHH
Q 002623 258 IGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR 335 (899)
Q Consensus 258 iG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~ 335 (899)
||....++++.+.+.+ ....+++|+|++||||+++|++|+..-.. ...+++.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~-------~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR-------ANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT-------CCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc-------cCCCeEEechhhCc------------
Confidence 5778888888887754 56678999999999999999999987522 23455555554432
Q ss_pred HHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc---CCCeEEEEecChhHHH--hhhccCHHHHccC
Q 002623 336 LKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLDEYR--KYIEKDPALERRF 410 (899)
Q Consensus 336 l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~~I~at~~~~~~--~~~~~d~al~~Rf 410 (899)
.++++.+ .+++|||+|++.|. .+.+..|..++. +.++++|++++.+... .--.+++.|..||
T Consensus 62 -~~~l~~a----~~gtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l 128 (138)
T PF14532_consen 62 -AELLEQA----KGGTLYLKNIDRLS--------PEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRL 128 (138)
T ss_dssp -HHHHHHC----TTSEEEEECGCCS---------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHC
T ss_pred -HHHHHHc----CCCEEEECChHHCC--------HHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHh
Confidence 2233332 56799999999998 667777777775 3588999998765421 1123467888888
Q ss_pred ceEEecCCC
Q 002623 411 QQVYVDQPN 419 (899)
Q Consensus 411 ~~i~~~~ps 419 (899)
..+.+..|+
T Consensus 129 ~~~~i~lPp 137 (138)
T PF14532_consen 129 SQLEIHLPP 137 (138)
T ss_dssp STCEEEE--
T ss_pred CCCEEeCCC
Confidence 765665554
No 414
>PRK08116 hypothetical protein; Validated
Probab=98.86 E-value=1.2e-08 Score=108.98 Aligned_cols=108 Identities=15% Similarity=0.307 Sum_probs=71.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
.++|+|++|||||+||.++++.+...+.+++.++.+++.... ...++... . .....+...+... .+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i--~~~~~~~~---~-~~~~~~~~~l~~~--dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI--KSTYKSSG---K-EDENEIIRSLVNA--DLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HHHHhccc---c-ccHHHHHHHhcCC--CEEEEecc
Confidence 499999999999999999999986667788888887764321 11111100 0 0011222333333 49999999
Q ss_pred --CccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 761 --EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 761 --d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
+......++.|+.+|+... . ....+|+|||..+..+
T Consensus 188 g~e~~t~~~~~~l~~iin~r~-~---------~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY-R---------KGLPTIVTTNLSLEEL 225 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHH
Confidence 5567778899999998521 1 2245889999976554
No 415
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.86 E-value=5.3e-08 Score=113.83 Aligned_cols=182 Identities=22% Similarity=0.310 Sum_probs=120.9
Q ss_pred CCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc----
Q 002623 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 326 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---- 326 (899)
.+.+++|.+..++.+.+.+.+ ....++++.|++|||||++|++++..... .+.+++.+||+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~~~~~~ 208 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKDLIESE 208 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHHHHHHH
Confidence 356789999888887776643 34567899999999999999999987522 36799999998763110
Q ss_pred -------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeE
Q 002623 327 -------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (899)
Q Consensus 327 -------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 386 (899)
.+.|....+ ...+ ....++.|||||++.|. .+.+..|.++++.+ +++
T Consensus 209 lfg~~~g~~~~~~~~~-~g~~----~~a~~Gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 209 LFGHEKGAFTGANTIR-QGRF----EQADGGTLFLDEIGDMP--------LDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred hcCCCCCCCCCCCcCC-CCCe----eECCCCEEEEeccccCC--------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 001100000 0001 12346689999999998 67777888888654 458
Q ss_pred EEEecChhHHH--hhhccCHHHHccCceEEecCCCH----HHHHHHHHHHHHHHhhhhC---CCCCHHHHHHHHHhc
Q 002623 387 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNV----EDTISILRGLRERYELHHG---VRISDSALVEAAILS 454 (899)
Q Consensus 387 ~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~----ee~~~Il~~~~~~~~~~~~---~~i~~~~l~~~~~ls 454 (899)
+|+||+.+... ..-...+.|..||..+.|..|+. +++..+++.++.++...++ ..++++++..+..+.
T Consensus 276 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 352 (469)
T PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA 352 (469)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 99998876421 11134577888998777777765 4555666777776655443 257888887765443
No 416
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=1.7e-08 Score=115.63 Aligned_cols=156 Identities=18% Similarity=0.325 Sum_probs=96.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcC--CCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 758 (899)
+++||||||+|||+|++++++.+.. .+..++++++.++...... .+ .. + ....+.+..+ ....+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~-~~-~~--~-----~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD-SM-KE--G-----KLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH-HH-hc--c-----cHHHHHHHHH-hcCCEEEEe
Confidence 4999999999999999999998743 2456788888776433211 11 00 0 0011222222 234699999
Q ss_pred CCCccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 002623 759 EIEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (899)
Q Consensus 759 Eid~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (899)
|++.+. ...+..|+..++.- .+ .+..+|+||+..+..+ ..+.
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l--~~--------~~k~iIitsd~~p~~l--------------------------~~l~ 245 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNEL--HD--------SGKQIVICSDREPQKL--------------------------SEFQ 245 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHH--HH--------cCCeEEEECCCCHHHH--------------------------HHHH
Confidence 999764 33556666665431 00 1234667776644332 2345
Q ss_pred hHHHhccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 837 PEFMNRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 837 p~ll~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
+.+.+||. .++.+.||+.+++..|+++.+...+ ..++++++..+..
T Consensus 246 ~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~-------~~l~~ev~~~Ia~ 293 (440)
T PRK14088 246 DRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH-------GELPEEVLNFVAE 293 (440)
T ss_pred HHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC-------CCCCHHHHHHHHh
Confidence 67778883 3889999999999999988876432 3455666544443
No 417
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=3.3e-08 Score=106.49 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC--------C--ceEEeccccchhhhhhh
Q 002623 656 PAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE--------E--ALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 656 ~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~--------~--~~~~i~~~~~~~~~~~~ 725 (899)
.+++.+.+.+...+... .+||+|+.|+||+.+|+.+++.++... . .++.++..
T Consensus 3 ~~~~~l~~~i~~~~l~h--------aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~--------- 65 (299)
T PRK07132 3 NWIKFLDNSATQNKISH--------SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF--------- 65 (299)
T ss_pred hHHHHHHHHHHhCCCCe--------EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---------
Confidence 45667777765432211 489999999999999999999984311 0 11111100
Q ss_pred hhcCCCCCCcccccccchhHHHh-----hCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecC
Q 002623 726 RLIGAPPGYVGYEEGGQLTEVVR-----RRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSN 800 (899)
Q Consensus 726 ~l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN 800 (899)
| ..++.++...+.+.+. ...+.|++||++|+++...+|+|+..||+ +..+++||++|+
T Consensus 66 ---g---~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~ 128 (299)
T PRK07132 66 ---D---KDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTK 128 (299)
T ss_pred ---C---CcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeC
Confidence 1 1122222222222222 13567999999999999999999999998 456788888776
Q ss_pred CChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHH
Q 002623 801 VGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRL 863 (899)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~ 863 (899)
. ...+-|.+.+|| +++.|.|++.+++...+..
T Consensus 129 ~------------------------------~~kll~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 129 N------------------------------INKVLPTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred C------------------------------hHhChHHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 5 466778899999 9999999999998866554
No 418
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.85 E-value=1.1e-08 Score=119.60 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=119.3
Q ss_pred cceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCccccccc--chhHHHhhCCCeEEE
Q 002623 679 IASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGG--QLTEVVRRRPYAVIL 756 (899)
Q Consensus 679 ~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~ 756 (899)
+|.+++.|+.|+||++++++++..+.. ..||+.+..+ .+...++|.-.-......+. .-.+.+..++++|||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~ 98 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLV 98 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEE
Confidence 456999999999999999999999832 3466544333 22345666420000000011 123567788899999
Q ss_pred EeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhc
Q 002623 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSI 834 (899)
Q Consensus 757 lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (899)
|||++.+++.+++.|++.|++|.++... |.++.+ .++++|+|.|.. . ....
T Consensus 99 lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~-~--------------------------~~~~ 151 (584)
T PRK13406 99 LAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA-E--------------------------EDER 151 (584)
T ss_pred ecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh-h--------------------------cccC
Confidence 9999999999999999999999888755 667766 488888874441 0 0467
Q ss_pred CChHHHhccceEEecCCCCHHHHHHH--HHHHHHHHHhhcccCCCccCHHHHHHhhcc
Q 002623 835 FRPEFMNRVDEYIVFQPLDRDQISSI--VRLQVSFSKVSWIYSPWHFNYEMLVKFCYL 890 (899)
Q Consensus 835 ~~p~ll~R~d~~i~f~~l~~e~i~~I--~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 890 (899)
+++++++||+..|.+.+++..+.... ....+.+....+ ....++.+.+..+|..
T Consensus 152 L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl--~~v~v~~~~l~~i~~~ 207 (584)
T PRK13406 152 APAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARL--PAVGPPPEAIAALCAA 207 (584)
T ss_pred CCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHH--ccCCCCHHHHHHHHHH
Confidence 89999999999999999986654320 111122222222 2567788888777753
No 419
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.83 E-value=2.7e-08 Score=116.93 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=40.2
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYM 703 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l 703 (899)
.++++||++.+..|...+.....+. .|...++|+||||||||++++.+++.+
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~----~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN----APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc----CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999998888876533221 121149999999999999999999987
No 420
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.81 E-value=2.3e-08 Score=117.88 Aligned_cols=122 Identities=21% Similarity=0.251 Sum_probs=82.0
Q ss_pred CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-----------------------CeEEEEecChhHHHhhhccC
Q 002623 347 EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-----------------------ELRCIGATTLDEYRKYIEKD 403 (899)
Q Consensus 347 ~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~v~~I~at~~~~~~~~~~~d 403 (899)
..+++|||||++.|. ..++..|+++|+.+ ++++|++++.+.. ..++
T Consensus 225 AnGGtL~LDei~~L~--------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll---~~~d 293 (637)
T PRK13765 225 AHKGVLFIDEINTLD--------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL---ENMH 293 (637)
T ss_pred CCCcEEEEeChHhCC--------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH---Hhhh
Confidence 346799999999985 66778888888533 4589999998653 2468
Q ss_pred HHHHccCc----eEEecC--C-CHHHHHHHHHHHHHHHhhh-hCCCCCHHHHHHHHHhcccccCCCC---C-hhhHHHHH
Q 002623 404 PALERRFQ----QVYVDQ--P-NVEDTISILRGLRERYELH-HGVRISDSALVEAAILSDRYISGRF---L-PDKAIDLV 471 (899)
Q Consensus 404 ~al~~Rf~----~i~~~~--p-s~ee~~~Il~~~~~~~~~~-~~~~i~~~~l~~~~~ls~~~i~~~~---~-p~~a~~ll 471 (899)
|.|..||. .+.|.. + +.+.+..+++.+...+... .-..++++++..+++.+.|.-..+. + .....+++
T Consensus 294 pdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 294 PALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 99999995 244443 1 3556666666555554433 2236899999999988877655544 2 44566677
Q ss_pred HHHHHhhh
Q 002623 472 DEAAAKLK 479 (899)
Q Consensus 472 d~a~~~~~ 479 (899)
..|...++
T Consensus 374 r~a~~~a~ 381 (637)
T PRK13765 374 RVAGDIAR 381 (637)
T ss_pred HHHHHHHH
Confidence 76665544
No 421
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=98.81 E-value=7.8e-09 Score=81.37 Aligned_cols=52 Identities=42% Similarity=0.663 Sum_probs=48.8
Q ss_pred HHHHHHHcCCCCcCHHHHHHHHHccCCcHHHHHHHHcCCCHHHHHHHHHHHh
Q 002623 94 SPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFI 145 (899)
Q Consensus 94 A~~~A~~~~~~~v~~eHlL~all~~~~~~~~~~l~~~gv~~~~l~~~~~~~~ 145 (899)
|+++|+++||++|++||||++|+.++++.+.++|+++|+|++.++..+++.+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999998765
No 422
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.80 E-value=3.9e-08 Score=112.20 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=98.8
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhc-CCCCCCcccccccchhHHH-hhCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI-GAPPGYVGYEEGGQLTEVV-RRRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~-g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lD 758 (899)
.+||+||||-|||+||+.||+.. |...+.||.++-...+.+..-+ +.... ...+ ....+.+|++|
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~kI~~avq~----------~s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKEKIENAVQN----------HSVLDADSRPVCLVID 394 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHHHHHHHHhh----------ccccccCCCcceEEEe
Confidence 49999999999999999999999 8999999999876655443221 11000 0001 01224578999
Q ss_pred CCCccChHHHHHHHHhhcCC-e-eecCCCcee---------eeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHH
Q 002623 759 EIEKAHSDVFNVFLQILDDG-R-VTDSQGRTV---------SFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRV 827 (899)
Q Consensus 759 Eid~l~~~~~~~Ll~~le~g-~-~~~~~g~~~---------~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (899)
|||-.++...+.|+..+... . .+-..+... ...+- |||.||.
T Consensus 395 EIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICNd-------------------------- 447 (877)
T KOG1969|consen 395 EIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IICICND-------------------------- 447 (877)
T ss_pred cccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC-EEEEecC--------------------------
Confidence 99999999999999998731 1 111111000 01222 5677765
Q ss_pred HHHHHhcCChHHH--hccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhccc
Q 002623 828 MDAARSIFRPEFM--NRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCYLA 891 (899)
Q Consensus 828 ~~~~~~~~~p~ll--~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 891 (899)
.+-|+|. .-+-.+|.|.|++..-+.+-++..+. .+....+..+|..+|.+.
T Consensus 448 ------LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~-------rE~mr~d~~aL~~L~el~ 500 (877)
T KOG1969|consen 448 ------LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICH-------RENMRADSKALNALCELT 500 (877)
T ss_pred ------ccchhhhhcccceEEEEecCCChhHHHHHHHHHHh-------hhcCCCCHHHHHHHHHHh
Confidence 2334443 33447899999998766533333333 333456677788777753
No 423
>PRK09087 hypothetical protein; Validated
Probab=98.80 E-value=8.1e-08 Score=100.04 Aligned_cols=135 Identities=15% Similarity=0.202 Sum_probs=86.6
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
.++|+||+|+|||+|++++++.. +. .+++...+... +...+. .++|+|||+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~~--~~i~~~~~~~~---------------------~~~~~~---~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---DA--LLIHPNEIGSD---------------------AANAAA---EGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---CC--EEecHHHcchH---------------------HHHhhh---cCeEEEECC
Confidence 39999999999999999998764 22 23333322111 111111 148999999
Q ss_pred CccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHH
Q 002623 761 EKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFM 840 (899)
Q Consensus 761 d~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll 840 (899)
+.+.. .+..|+.++..- ......+|+|++..+..+ ..+.|++.
T Consensus 97 ~~~~~-~~~~lf~l~n~~----------~~~g~~ilits~~~p~~~--------------------------~~~~~dL~ 139 (226)
T PRK09087 97 DAGGF-DETGLFHLINSV----------RQAGTSLLMTSRLWPSSW--------------------------NVKLPDLK 139 (226)
T ss_pred CCCCC-CHHHHHHHHHHH----------HhCCCeEEEECCCChHHh--------------------------ccccccHH
Confidence 98753 244555555320 001245677777654333 23467899
Q ss_pred hccc--eEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhh
Q 002623 841 NRVD--EYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFC 888 (899)
Q Consensus 841 ~R~d--~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 888 (899)
+||. .++.+.+|+.+++.+|+++.++..+ ..++++++..+.
T Consensus 140 SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~-------~~l~~ev~~~La 182 (226)
T PRK09087 140 SRLKAATVVEIGEPDDALLSQVIFKLFADRQ-------LYVDPHVVYYLV 182 (226)
T ss_pred HHHhCCceeecCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHH
Confidence 9996 5899999999999999999997732 456666654443
No 424
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.80 E-value=3.8e-08 Score=105.20 Aligned_cols=156 Identities=16% Similarity=0.279 Sum_probs=99.0
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
++||+||+|||||.+++.+-+.+.....-...++++.......+...+...-. ...++.+ +- ......|+||||+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~---k~~~~~~-gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLE---KRRGRVY-GP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTEC---ECTTEEE-EE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEE---cCCCCCC-CC-CCCcEEEEEeccc
Confidence 49999999999999998877665332223456778776655444443332110 0001110 00 1223459999999
Q ss_pred CccChH------HHHHHHHhhcCCeeecCCC-ceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHh
Q 002623 761 EKAHSD------VFNVFLQILDDGRVTDSQG-RTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARS 833 (899)
Q Consensus 761 d~l~~~------~~~~Ll~~le~g~~~~~~g-~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (899)
+.-.++ ..+.|.++|+.|-+.|... .-....++.+|+++|++.. +.
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G---------------------------r~ 162 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG---------------------------RN 162 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------------
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC---------------------------CC
Confidence 875533 5688899999988888653 3345579999999998321 33
Q ss_pred cCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHH
Q 002623 834 IFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 834 ~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
.+++-|++.| .++.+++++.+.+..|+...+...-
T Consensus 163 ~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l 197 (272)
T PF12775_consen 163 PISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHL 197 (272)
T ss_dssp SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHT
T ss_pred CCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhc
Confidence 4677888989 8999999999999999999888653
No 425
>PRK06620 hypothetical protein; Validated
Probab=98.80 E-value=4.5e-08 Score=101.05 Aligned_cols=129 Identities=19% Similarity=0.336 Sum_probs=79.1
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||++++++++.. +..+ +...... ....+ ...+|+||||
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~---~~~~--~~~~~~~------------------------~~~~~--~~d~lliDdi 94 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLS---NAYI--IKDIFFN------------------------EEILE--KYNAFIIEDI 94 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhcc---CCEE--cchhhhc------------------------hhHHh--cCCEEEEecc
Confidence 59999999999999999988765 2212 1110000 01111 2258999999
Q ss_pred CccCh-HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHH
Q 002623 761 EKAHS-DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEF 839 (899)
Q Consensus 761 d~l~~-~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 839 (899)
|.+.. ..+..+..+.+.| . .+|+|++..+.. - .+ |+|
T Consensus 95 ~~~~~~~lf~l~N~~~e~g-------------~-~ilits~~~p~~--------------------------l-~l-~~L 132 (214)
T PRK06620 95 ENWQEPALLHIFNIINEKQ-------------K-YLLLTSSDKSRN--------------------------F-TL-PDL 132 (214)
T ss_pred ccchHHHHHHHHHHHHhcC-------------C-EEEEEcCCCccc--------------------------c-ch-HHH
Confidence 97643 2333333334543 2 345555442211 1 24 889
Q ss_pred Hhccce--EEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 840 MNRVDE--YIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 840 l~R~d~--~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
++|+.. ++.+.+|+.+++..++++.+...+ ..++++++.-++.
T Consensus 133 ~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-------l~l~~ev~~~L~~ 177 (214)
T PRK06620 133 SSRIKSVLSILLNSPDDELIKILIFKHFSISS-------VTISRQIIDFLLV 177 (214)
T ss_pred HHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-------CCCCHHHHHHHHH
Confidence 999942 899999999999999888877532 3456666544443
No 426
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.78 E-value=3.6e-08 Score=94.23 Aligned_cols=130 Identities=23% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc------------cccchHHHHHHHHHHHH
Q 002623 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA------------KYRGEFEDRLKAVLKEV 343 (899)
Q Consensus 276 ~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~------------~~~g~~~~~l~~l~~~~ 343 (899)
..+++|+||||||||++++.++..+... +..++.++++...... ............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-------CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998331 1247777766543211 11223334455566666
Q ss_pred HhhCCCeEEEEccchhhccCCCCCchHHH--HHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccCc-eEEecC
Q 002623 344 TESEGQIILFIDEIHTVVGAGATNGAMDA--GNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQ-QVYVDQ 417 (899)
Q Consensus 344 ~~~~~~~IL~iDEi~~l~~~~~~~~~~~~--~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf~-~i~~~~ 417 (899)
... .+.+|||||++.+............ ..............+|+++|... ...+..+..|++ .+.+..
T Consensus 75 ~~~-~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~ 146 (148)
T smart00382 75 RKL-KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLLL 146 (148)
T ss_pred Hhc-CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccceEEEecC
Confidence 543 3579999999998743311000000 00112233456788899988611 234566666776 555543
No 427
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.4e-07 Score=103.45 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccc---------------cCCCeEEEEEcccc--cc
Q 002623 262 DEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA---------------LMNRKLISLDMGAL--IA 324 (899)
Q Consensus 262 ~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~---------------l~~~~~~~l~~~~l--~~ 324 (899)
...+++... ..+-+..+||+||+|+|||++|+.+|+.+.+...... .....++.++...- ..
T Consensus 8 ~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~ 86 (325)
T PRK08699 8 EQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPEN 86 (325)
T ss_pred HHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccc
Confidence 344555544 2344456899999999999999999999976332100 11234555643210 01
Q ss_pred cccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhh
Q 002623 325 GAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 399 (899)
Q Consensus 325 ~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~ 399 (899)
|.+...-..+.++.+.+.+... ++.-|++||+++.+. ...++.|...+++. ...+|.+|+...
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------~~a~naLLk~LEep~~~~~~Ilvth~~~---- 154 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN--------LQAANSLLKVLEEPPPQVVFLLVSHAAD---- 154 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCC--------HHHHHHHHHHHHhCcCCCEEEEEeCChH----
Confidence 1000011244566666666532 345688999999997 67788888888864 566777777665
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHHH
Q 002623 400 IEKDPALERRFQQVYVDQPNVEDTISILR 428 (899)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~ps~ee~~~Il~ 428 (899)
.+.+.+++||+.+.|++|+.++....|.
T Consensus 155 -~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 155 -KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred -hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 5779999999999999999998776664
No 428
>PRK08181 transposase; Validated
Probab=98.76 E-value=5.3e-08 Score=103.43 Aligned_cols=106 Identities=15% Similarity=0.265 Sum_probs=71.7
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||+||.++++.+...+..++.+++.++......... .+ ....+...+... .+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~----~~-----~~~~~l~~l~~~--dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR----EL-----QLESAIAKLDKF--DLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh----CC-----cHHHHHHHHhcC--CEEEEecc
Confidence 59999999999999999999988766777777887776543221110 00 001122333333 49999999
Q ss_pred CccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhc
Q 002623 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (899)
Q Consensus 761 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~ 808 (899)
+..+ +..++.|+++++.. +.+.-+|+|||.++..|..
T Consensus 177 g~~~~~~~~~~~Lf~lin~R-----------~~~~s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 177 AYVTKDQAETSVLFELISAR-----------YERRSILITANQPFGEWNR 215 (269)
T ss_pred ccccCCHHHHHHHHHHHHHH-----------HhCCCEEEEcCCCHHHHHH
Confidence 8765 44567889998742 1123488999998887754
No 429
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.75 E-value=1.4e-08 Score=116.40 Aligned_cols=150 Identities=21% Similarity=0.291 Sum_probs=96.1
Q ss_pred CCCCCcCchHHHHHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEE--------------
Q 002623 253 KLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD-------------- 318 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-------------- 318 (899)
.|.+++|+...++.+.- ......+++|+||||+|||++++.++..+........+....++++.
T Consensus 189 d~~~v~Gq~~~~~al~l--aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPf 266 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI--TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPF 266 (506)
T ss_pred CeEEEECcHHHHhhhhe--eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCc
Confidence 67788998876665432 34566789999999999999999999876432211112222222210
Q ss_pred --------cccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------
Q 002623 319 --------MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------- 383 (899)
Q Consensus 319 --------~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------- 383 (899)
..+++.|.. ..+ -..+ ....+++|||||++.+. ...++.|++.|+.+
T Consensus 267 r~ph~~~s~~~l~GGg~-----~~~-pG~l----~~A~gGvLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r~ 328 (506)
T PRK09862 267 RSPHHSASLTAMVGGGA-----IPG-PGEI----SLAHNGVLFLDELPEFE--------RRTLDALREPIESGQIHLSRT 328 (506)
T ss_pred cCCCccchHHHHhCCCc-----eeh-hhHh----hhccCCEEecCCchhCC--------HHHHHHHHHHHHcCcEEEecC
Confidence 111111110 000 0111 22356799999998876 67888999988765
Q ss_pred --------CeEEEEecChhHHHhh----------------hccCHHHHccCc-eEEecCCCHHH
Q 002623 384 --------ELRCIGATTLDEYRKY----------------IEKDPALERRFQ-QVYVDQPNVED 422 (899)
Q Consensus 384 --------~v~~I~at~~~~~~~~----------------~~~d~al~~Rf~-~i~~~~ps~ee 422 (899)
++++|+|+|+.+...+ -.+++++++||+ .+.++.|+.++
T Consensus 329 g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHH
Confidence 4689999998762111 146789999999 78999888763
No 430
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=8.3e-08 Score=98.47 Aligned_cols=94 Identities=24% Similarity=0.216 Sum_probs=76.5
Q ss_pred CeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-CeEEEEecChh-------HHHhhhccCHHHHccCceEEecCCCH
Q 002623 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLD-------EYRKYIEKDPALERRFQQVYVDQPNV 420 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~~I~at~~~-------~~~~~~~~d~al~~Rf~~i~~~~ps~ 420 (899)
|+||||||+|.|- .+.+.+|.+++++. ...+|.+||.- +|..-..++-.|.+|.-.|...+++.
T Consensus 289 pGVLFIDEvHMLD--------IEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD--------IECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhhh--------hHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 7899999999997 78899999999854 44556666642 23333467888999998899999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhc
Q 002623 421 EDTISILRGLRERYELHHGVRISDSALVEAAILS 454 (899)
Q Consensus 421 ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls 454 (899)
++..+||+..+.. .++.+++++++.+....
T Consensus 361 ~d~~~IL~iRc~E----Edv~m~~~A~d~Lt~i~ 390 (454)
T KOG2680|consen 361 EDIKKILRIRCQE----EDVEMNPDALDLLTKIG 390 (454)
T ss_pred HHHHHHHHhhhhh----hccccCHHHHHHHHHhh
Confidence 9999999988877 78999999999888775
No 431
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.75 E-value=1.2e-07 Score=110.47 Aligned_cols=182 Identities=17% Similarity=0.216 Sum_probs=118.2
Q ss_pred CCCCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc----
Q 002623 253 KLDPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---- 326 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---- 326 (899)
.+.+++|.+..+..+.+.+.+ ....++++.|++||||+++|++++..... .+.+++.+||..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~~~~~~ 213 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPESLLESE 213 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHHHHHHH
Confidence 345688888877777776533 44568999999999999999999886522 36789999998763110
Q ss_pred -------cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeE
Q 002623 327 -------KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (899)
Q Consensus 327 -------~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 386 (899)
.+.|....+ ...+ ....+++||||||+.|. ...+..|..+++.+ +++
T Consensus 214 lfg~~~~~~~~~~~~~-~g~~----~~a~~gtl~ld~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 214 LFGHEKGAFTGAQTLR-QGLF----ERANEGTLLLDEIGEMP--------LVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred hcCCCCCCCCCCCCCC-CCce----EECCCCEEEEechhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 011110000 0011 12346799999999998 66777788887643 479
Q ss_pred EEEecChhHHH--hhhccCHHHHccCceEEecCCCHHHH----HHHHHHHHHHHhhhhC---CCCCHHHHHHHHHhc
Q 002623 387 CIGATTLDEYR--KYIEKDPALERRFQQVYVDQPNVEDT----ISILRGLRERYELHHG---VRISDSALVEAAILS 454 (899)
Q Consensus 387 ~I~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps~ee~----~~Il~~~~~~~~~~~~---~~i~~~~l~~~~~ls 454 (899)
+|++|+.+... ..-...+.+..|+..+.+..|+..++ ..+++.++.++....+ ..++++++..+..+.
T Consensus 281 ii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 357 (457)
T PRK11361 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWS 357 (457)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCC
Confidence 99999876421 11124566777887777777776554 4455666666654433 468888887765443
No 432
>PF13173 AAA_14: AAA domain
Probab=98.74 E-value=4.6e-08 Score=92.66 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=82.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEcc
Q 002623 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDE 356 (899)
Q Consensus 277 ~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDE 356 (899)
..++|.||.|||||++++.+++.+. ...+++.+|+.+..... .....+.+.+.+.. ..++.+|||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRR----LADPDLLEYFLELI-KPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHH----HhhhhhHHHHHHhh-ccCCcEEEEeh
Confidence 4578999999999999999999873 14678888876654211 00000222222221 12567999999
Q ss_pred chhhccCCCCCchHHHHHHHhhhhcCC-CeEEEEecChhHHHhhhccCHHHHccCceEEecCCCHHHH
Q 002623 357 IHTVVGAGATNGAMDAGNLLKPMLGRG-ELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDT 423 (899)
Q Consensus 357 i~~l~~~~~~~~~~~~~~~L~~~l~~~-~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~ 423 (899)
++.+. +....++.+.+++ ++.+|.|++...... ......+..|...+.+.+.+..|.
T Consensus 70 iq~~~---------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~-~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 70 IQYLP---------DWEDALKFLVDNGPNIKIILTGSSSSLLS-KDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhhc---------cHHHHHHHHHHhccCceEEEEccchHHHh-hcccccCCCeEEEEEECCCCHHHh
Confidence 99884 4566777777766 677777776654321 134466777888899999988763
No 433
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.73 E-value=3e-08 Score=112.21 Aligned_cols=186 Identities=14% Similarity=0.186 Sum_probs=116.8
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHHcC-CC---CCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecc
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG-LS---DPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM 715 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~-~~---~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~ 715 (899)
+..|...+-..|.|.+++++.+.-++--.... .. .-+.-+ |+||+|.||||||.+-+.+++.+.+. ++.+.
T Consensus 420 y~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~I-NILL~GDPGtsKSqlLqyv~~l~pRg----~yTSG 494 (804)
T KOG0478|consen 420 YELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDI-NILLVGDPGTSKSQLLQYCHRLLPRG----VYTSG 494 (804)
T ss_pred HHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccc-eEEEecCCCcCHHHHHHHHHHhCCcc----eeecC
Confidence 34455666778999999999887776321110 00 112234 79999999999999999999988321 11111
Q ss_pred ccchhhhhhhhhcCCCCCCccc-ccccch---hHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee
Q 002623 716 SEYMEKHAVSRLIGAPPGYVGY-EEGGQL---TEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF 790 (899)
Q Consensus 716 ~~~~~~~~~~~l~g~~~~~~g~-~~~~~l---~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~ 790 (899)
..- .-.|-.. |+-. .+.+++ .+++-.+.+||..|||+|||+.+..+.|+++||...+.... |--..+
T Consensus 495 kGs-------SavGLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 495 KGS-------SAVGLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred Ccc-------chhccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 100 0011111 1111 111221 34555677899999999999999999999999998887766 544444
Q ss_pred -CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceE-EecCCCCHH
Q 002623 791 -TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRD 855 (899)
Q Consensus 791 -~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~-i~f~~l~~e 855 (899)
.++-||+++|+-...++. .. .+.+ .=.++|.|++|||.+ +.+.+.+..
T Consensus 567 NAR~SVLAaANP~~skynp------~k-----~i~e------NI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNP------NK-----SIIE------NINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred cccceeeeeeccccccCCC------CC-----chhh------ccCCChhhhhhhcEEEEEecCcchh
Confidence 378889999974333221 00 1111 125789999999985 667777644
No 434
>PRK15115 response regulator GlrR; Provisional
Probab=98.73 E-value=1.3e-07 Score=109.73 Aligned_cols=176 Identities=18% Similarity=0.228 Sum_probs=117.3
Q ss_pred CCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHH
Q 002623 256 PVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 333 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~ 333 (899)
.++|....++++++.... ....+++|+|++|||||++|+++++.... .+.+++.+||..+.... .
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~~~-----~- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPEQL-----L- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCHHH-----H-
Confidence 378888888877775533 34467899999999999999999987522 26789999998763110 0
Q ss_pred HHHHHHHHH--------------HHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeE
Q 002623 334 DRLKAVLKE--------------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELR 386 (899)
Q Consensus 334 ~~l~~l~~~--------------~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~ 386 (899)
-..+|.. ......+++||||||+.|. ...+..|.++++.+ +++
T Consensus 202 --~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~r 271 (444)
T PRK15115 202 --ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP--------APLQVKLLRVLQERKVRPLGSNRDIDIDVR 271 (444)
T ss_pred --HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC--------HHHHHHHHHHHhhCCEEeCCCCceeeeeEE
Confidence 0011110 0112346799999999998 66777888888654 568
Q ss_pred EEEecChhHHHh--hhccCHHHHccCceEEecCCCHHHHHH----HHHHHHHHHhhhhC---CCCCHHHHHHHHHhc
Q 002623 387 CIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVEDTIS----ILRGLRERYELHHG---VRISDSALVEAAILS 454 (899)
Q Consensus 387 ~I~at~~~~~~~--~~~~d~al~~Rf~~i~~~~ps~ee~~~----Il~~~~~~~~~~~~---~~i~~~~l~~~~~ls 454 (899)
+|++|+.+.... .-...+.+..|+..+.|..|+..+|.+ +++.++.++...++ ..++++++..+..+.
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (444)
T PRK15115 272 IISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 (444)
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 999988653211 112446677788878888888765544 45666666544333 258899988776554
No 435
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.72 E-value=4.2e-07 Score=106.14 Aligned_cols=179 Identities=22% Similarity=0.305 Sum_probs=118.2
Q ss_pred CCCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc------
Q 002623 255 DPVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA------ 326 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~------ 326 (899)
..++|.++.+..+.+.+.+ ....++++.|++||||+++|++++..... .+.+++.+||..+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~lf 206 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESELF 206 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHhc
Confidence 4588888877777766543 34467899999999999999999987532 26789999998763110
Q ss_pred -----cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEE
Q 002623 327 -----KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCI 388 (899)
Q Consensus 327 -----~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I 388 (899)
.+.|...... ..+ ....+++||||||+.|. .+.+..|.++++.+ ++++|
T Consensus 207 g~~~~~~~~~~~~~~-g~~----~~a~~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii 273 (463)
T TIGR01818 207 GHEKGAFTGANTRRQ-GRF----EQADGGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIV 273 (463)
T ss_pred CCCCCCCCCcccCCC-CcE----EECCCCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEE
Confidence 0111100000 001 12346789999999998 66777788887654 46899
Q ss_pred EecChhHHH--hhhccCHHHHccCceEEecCCC----HHHHHHHHHHHHHHHhhhhC---CCCCHHHHHHHHHh
Q 002623 389 GATTLDEYR--KYIEKDPALERRFQQVYVDQPN----VEDTISILRGLRERYELHHG---VRISDSALVEAAIL 453 (899)
Q Consensus 389 ~at~~~~~~--~~~~~d~al~~Rf~~i~~~~ps----~ee~~~Il~~~~~~~~~~~~---~~i~~~~l~~~~~l 453 (899)
++|+.+.-. ..-...+.|..|+..+.|..|+ .+++..+++.++..+...++ ..++++++..+..+
T Consensus 274 ~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 274 AATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred EeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 998866421 1112346777788755555554 46677777777777665554 46899998877655
No 436
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.72 E-value=5.2e-07 Score=90.54 Aligned_cols=182 Identities=20% Similarity=0.317 Sum_probs=126.8
Q ss_pred cceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhc
Q 002623 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLI 728 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~ 728 (899)
..++|-+..++.|.+.-.+...|.... |+||+|..||||+++.+++...+...+-.+|.++-.++..-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pAN-----nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPAN-----NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCccc-----ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------
Confidence 458899999999999888877776533 69999999999999999999999887888898888776432
Q ss_pred CCCCCCcccccccchhHHHhhCC-CeEEEEeCCCcc-ChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC---h
Q 002623 729 GAPPGYVGYEEGGQLTEVVRRRP-YAVILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG---S 803 (899)
Q Consensus 729 g~~~~~~g~~~~~~l~~~~~~~~-~~vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~---~ 803 (899)
..+.+.++..+ .=|||+|+.--= +.+....|-.+||.|- . -...|++|-+|||.. +
T Consensus 128 ------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-e------~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-E------GRPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-c------cCCCeEEEEEecCCccccc
Confidence 23445555444 347888886432 3456788888888642 1 133589999999984 2
Q ss_pred hhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhc
Q 002623 804 QYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 872 (899)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~ 872 (899)
+.+.+.. +....-...+.+ .+.+ .|-.||...+.|+|.+.++..+|++.+.++++..+
T Consensus 189 e~~~dn~-~~~~eih~~eav--------eEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 189 EDMKDNE-GSTGEIHPSEAV--------EEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred HhhhhCC-CcccccChhHHH--------HHhh--chhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 2222211 000000011222 2222 25689999999999999999999999998877443
No 437
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72 E-value=8e-08 Score=91.79 Aligned_cols=118 Identities=24% Similarity=0.261 Sum_probs=70.1
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh---hcC-CCCCCcccccccchhHHHhhCCCeEEE
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR---LIG-APPGYVGYEEGGQLTEVVRRRPYAVIL 756 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~---l~g-~~~~~~g~~~~~~l~~~~~~~~~~vl~ 756 (899)
+++|+||||||||++++.++..+......++.++++.......... ... ......+......+...++..++.+|+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999999999965444688888887654322210 111 111111111122344455555568999
Q ss_pred EeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCC
Q 002623 757 FDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (899)
Q Consensus 757 lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~ 801 (899)
+||++.+............... ..........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEEL---RLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhhh---HHHHHHHhcCCCEEEEEeCC
Confidence 9999999877666554431100 00000012246788899885
No 438
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.71 E-value=1.5e-07 Score=106.89 Aligned_cols=192 Identities=20% Similarity=0.266 Sum_probs=122.0
Q ss_pred hccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecc----ccchh-h
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDM----SEYME-K 721 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~----~~~~~-~ 721 (899)
.|++++|++++++.|...++.+..++.. ++++ ++|+||||+|||+||+.|++.+-. .++..+.. +.+.+ +
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~-~~~I--L~LvGPpG~GKSsLa~~la~~le~--~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEE-KKQI--LYLLGPVGGGKSSLAERLKSLMER--VPIYVLKANGERSPVNESP 148 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCC-CCce--EEEecCCCCCchHHHHHHHHHHHh--CcceeecCCCCCCCCCCCC
Confidence 3567999999999999999888777753 4454 999999999999999999998821 13333222 00000 0
Q ss_pred ------h----hhhhhcCCC---------------------------------------------CC---------Cccc
Q 002623 722 ------H----AVSRLIGAP---------------------------------------------PG---------YVGY 737 (899)
Q Consensus 722 ------~----~~~~l~g~~---------------------------------------------~~---------~~g~ 737 (899)
. .+...+|-+ |+ .+|.
T Consensus 149 L~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 149 LGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred CCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 0 000001110 00 0010
Q ss_pred cccc-------------chhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChh
Q 002623 738 EEGG-------------QLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQ 804 (899)
Q Consensus 738 ~~~~-------------~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~ 804 (899)
.+.+ .+.+.+..+..|++=|=|+-|.+.+++.-||.+.++|.+.-+.|-..-.-+.+||+.||- .
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE--~ 306 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNE--S 306 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCH--H
Confidence 0000 112334444457887779999999999999999999988654443333457889999997 1
Q ss_pred hhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC-HHHHHHHHHHHHHH
Q 002623 805 YILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQVSF 867 (899)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~-~e~i~~I~~~~l~~ 867 (899)
.|.. ...+....+|++|+ .+|.+|... ..+=.+|-++.+..
T Consensus 307 E~~~---------------------F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 307 EWQT---------------------FRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred HHHH---------------------HhcCccchhhhceE-EEEeCCccCChhHHHHHHHHHhcC
Confidence 2211 12566788999999 889998866 34445677766655
No 439
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.71 E-value=2.9e-07 Score=99.28 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=97.7
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhh---hhhhhcCCCCCCcc-cccccchhHH----HhhCCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKH---AVSRLIGAPPGYVG-YEEGGQLTEV----VRRRPY 752 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~---~~~~l~g~~~~~~g-~~~~~~l~~~----~~~~~~ 752 (899)
.++|+||+|+|||++++.+++.+.........+......... .+...+|.+..... ......+... ......
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999998874222111111111111111 12233454322110 0000122222 224456
Q ss_pred eEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHH
Q 002623 753 AVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 832 (899)
Q Consensus 753 ~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (899)
.||+|||++.+++...+.|..+.+-. .+ ....+.||++..+... +.+ .
T Consensus 125 ~vliiDe~~~l~~~~~~~l~~l~~~~--~~------~~~~~~vvl~g~~~~~--------------------~~l----~ 172 (269)
T TIGR03015 125 ALLVVDEAQNLTPELLEELRMLSNFQ--TD------NAKLLQIFLVGQPEFR--------------------ETL----Q 172 (269)
T ss_pred eEEEEECcccCCHHHHHHHHHHhCcc--cC------CCCeEEEEEcCCHHHH--------------------HHH----c
Confidence 79999999999988888776554321 00 1123455666655211 111 1
Q ss_pred hcCChHHHhccceEEecCCCCHHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 833 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 833 ~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
..-...+.+|+...+.++|++.+++..++...+...+. .....++++++..++.
T Consensus 173 ~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~---~~~~~~~~~~~~~i~~ 226 (269)
T TIGR03015 173 SPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGN---RDAPVFSEGAFDAIHR 226 (269)
T ss_pred CchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCC---CCCCCcCHHHHHHHHH
Confidence 11123577888789999999999999999998876642 1123467776555443
No 440
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.68 E-value=5.4e-08 Score=113.80 Aligned_cols=201 Identities=13% Similarity=0.111 Sum_probs=122.2
Q ss_pred hHHHhhccceeccchHHHHHHHHHHHHHcCCCC----CCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEecccc
Q 002623 642 HLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSD----PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (899)
Q Consensus 642 ~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~----~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~ 717 (899)
.+.+.+...|.|++.++++|.-++--.-..... -++-+ |+||+|.||||||.+-+.+++.+.+ .-+....++.
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDI-nILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkgss 355 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDI-HILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKGSS 355 (682)
T ss_pred HHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccce-eEEEcCCCchhHHHHHHHHHhhCCc--eEEEcccccc
Confidence 344455678999999888887766321111110 12224 8999999999999999999998732 1122222221
Q ss_pred chhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-CCEEE
Q 002623 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTVI 795 (899)
Q Consensus 718 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~ii 795 (899)
-.+-. .... ..+. +|. --.-.+++-.+.+||+.|||+|+|+.....+|..+||.+.++... |-.... .++-+
T Consensus 356 ~~GLT--Aav~-rd~~-tge--~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 356 AAGLT--AAVV-RDKV-TGE--WVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred ccCce--eEEE-EccC-CCe--EEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhh
Confidence 10000 0000 0000 110 001124455678899999999999999999999999999988876 533333 57889
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEec-CCCCHHHHHHHHHHHHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVF-QPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f-~~l~~e~i~~I~~~~l~~~ 868 (899)
++++|+....... . ..+.+ .=.|+++|++|||.++.+ ..++++.=+.|+.+.+...
T Consensus 430 LAAaNP~~Gryd~-------~----~~~~e------nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 430 LAAANPKFGRYDP-------K----KTVAE------NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred hhhhCCCCCcCCC-------C----CCHHH------hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 9999995432211 1 01111 235889999999996544 4555554456666666554
No 441
>PRK08116 hypothetical protein; Validated
Probab=98.68 E-value=1.8e-07 Score=99.97 Aligned_cols=131 Identities=16% Similarity=0.233 Sum_probs=73.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc--ccchHHHHHHHHHHHHHhhCCCeEEEE
Q 002623 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--YRGEFEDRLKAVLKEVTESEGQIILFI 354 (899)
Q Consensus 277 ~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~--~~g~~~~~l~~l~~~~~~~~~~~IL~i 354 (899)
.+++|+|++|||||+||.++++.+... +.+++.++.+.+....+ |.+........++..+.. .-+|+|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~---~dlLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN---ADLLIL 184 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC---CCEEEE
Confidence 359999999999999999999998542 56788888776543211 111111112233443332 239999
Q ss_pred ccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccC----ceEEecCCCH
Q 002623 355 DEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF----QQVYVDQPNV 420 (899)
Q Consensus 355 DEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf----~~i~~~~ps~ 420 (899)
||++..... ......+.+++.....++ ..+|.|||..+-.=....+..+.+|+ ..|.+..++.
T Consensus 185 DDlg~e~~t--~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 185 DDLGAERDT--EWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred ecccCCCCC--HHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 999643211 111122333333333333 45667777654211112468888885 3566666664
No 442
>PRK06526 transposase; Provisional
Probab=98.68 E-value=4.9e-08 Score=103.18 Aligned_cols=105 Identities=22% Similarity=0.382 Sum_probs=71.1
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh-hCCCeEEEEeC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR-RRPYAVILFDE 759 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDE 759 (899)
+++|+||||||||++|.+|+..+...+.....+.+.++......... .+.+...+. -....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~------------~~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH------------AGRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh------------cCcHHHHHHHhccCCEEEEcc
Confidence 59999999999999999999988666666666666655433211110 012222232 23456999999
Q ss_pred CCccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhc
Q 002623 760 IEKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (899)
Q Consensus 760 id~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~ 808 (899)
++..+ +..++.|+++++.. +.+..+|+|||.++..|..
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r-----------~~~~s~IitSn~~~~~w~~ 207 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSR-----------YERASLIVTSNKPFGRWGE 207 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHH-----------HhcCCEEEEcCCCHHHHHH
Confidence 99875 66778888988751 1123488999998887754
No 443
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.67 E-value=2.4e-08 Score=99.91 Aligned_cols=106 Identities=21% Similarity=0.334 Sum_probs=71.2
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||++|.++++.+...+.....++.+++.+..... ... .....+...+...+ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--~~~-------~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--RSD-------GSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--HCC-------TTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--ccc-------cchhhhcCcccccc--Eeccccc
Confidence 699999999999999999999987778888888888875542211 000 01123344555554 9999999
Q ss_pred CccC--hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhc
Q 002623 761 EKAH--SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (899)
Q Consensus 761 d~l~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~ 808 (899)
.... ....+.|+++|+... .+--.|+|||..++.|.+
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~~ 156 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELEE 156 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHHT
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHhh
Confidence 8654 557778888887621 122466799998877755
No 444
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.65 E-value=5.2e-08 Score=89.34 Aligned_cols=67 Identities=30% Similarity=0.552 Sum_probs=57.8
Q ss_pred HHHhHHHhhccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCC
Q 002623 639 KLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 707 (899)
Q Consensus 639 ~l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~ 707 (899)
....|+..|..+++||+-+.+.+..++...... ..|++|+ .+.|.||||||||.+++.||+.+|..+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 345677888899999999999999999876654 4689998 688999999999999999999997653
No 445
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.64 E-value=8.5e-08 Score=100.37 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=69.6
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+|+||||||+++.+|++.+...+..++.++.+++..... ..+.. . ... ...+...+.. ..+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~--~~~~~-~---~~~-~~~~l~~l~~--~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK--DTFSN-S---ETS-EEQLLNDLSN--VDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH--HHHhh-c---ccc-HHHHHHHhcc--CCEEEEeCC
Confidence 5999999999999999999999976677788887777643211 11110 0 000 1123333443 459999999
Q ss_pred CccChH--HHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 761 EKAHSD--VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 761 d~l~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
+....+ ....|.++++.. +. .+.-+|+|||..++.+
T Consensus 172 g~~~~s~~~~~~l~~Ii~~R-y~---------~~~~tiitSNl~~~~l 209 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRR-SS---------SKRPTGMLTNSNMEEM 209 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHH-Hh---------CCCCEEEeCCCCHHHH
Confidence 876533 455778888752 11 1345788999976655
No 446
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.63 E-value=7.6e-08 Score=105.30 Aligned_cols=107 Identities=15% Similarity=0.290 Sum_probs=71.5
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||+||.+||+.+...+..++.++..++........ +.. . .+.......+..++ +|+|||+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~-~~~---~---~~~~~~~~~l~~~D--LLIIDDl 255 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIR-FNN---D---KELEEVYDLLINCD--LLIIDDL 255 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHH-hcc---c---hhHHHHHHHhccCC--EEEEecc
Confidence 5999999999999999999999987777888888877644321111 100 0 00011123444444 9999999
Q ss_pred Cc--cChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhh
Q 002623 761 EK--AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYI 806 (899)
Q Consensus 761 d~--l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~ 806 (899)
.. ..+..++.|+.+++... . .+--+|+|||..+..+
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~-~---------~~k~tIiTSNl~~~el 293 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRL-L---------RQKKMIISTNLSLEEL 293 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHH
Confidence 65 45677888888887521 1 1234789999976655
No 447
>PRK12377 putative replication protein; Provisional
Probab=98.61 E-value=9e-08 Score=100.45 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=69.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc--c-cchHHHHHHHHHHHHHhhCCCeE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--Y-RGEFEDRLKAVLKEVTESEGQII 351 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~--~-~g~~~~~l~~l~~~~~~~~~~~I 351 (899)
...+++|+||||||||+||.+|++.+.. .+..++.+...++...-+ + .+. ....++..+. ..-+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~-------~g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~l~---~~dL 166 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA-------KGRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQELC---KVDL 166 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHHhc---CCCE
Confidence 3468999999999999999999999854 256677777666543211 0 011 1123344443 3349
Q ss_pred EEEccchhhccCCCCCchHHHHHHHhhhhcC---CCeEEEEecChhH--HHhhhccCHHHHccC
Q 002623 352 LFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDE--YRKYIEKDPALERRF 410 (899)
Q Consensus 352 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~~v~~I~at~~~~--~~~~~~~d~al~~Rf 410 (899)
|+|||++..... ......|.++++. ....+|.|||... +.. .+...+.+|+
T Consensus 167 LiIDDlg~~~~s------~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~--~~~~ri~dRl 222 (248)
T PRK12377 167 LVLDEIGIQRET------KNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGERVMDRM 222 (248)
T ss_pred EEEcCCCCCCCC------HHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHH--HhhHHHHHHH
Confidence 999999765322 2344566666652 2345677788543 322 2345566665
No 448
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.5e-07 Score=99.52 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=72.7
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||||||||+||-+|++.+...+..+..+..+++........--|.. ...+...+... .||+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~--------~~~l~~~l~~~--dlLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL--------EEKLLRELKKV--DLLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch--------HHHHHHHhhcC--CEEEEecc
Confidence 599999999999999999999998667888888888875542211110100 11233334444 49999999
Q ss_pred Ccc--ChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhc
Q 002623 761 EKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (899)
Q Consensus 761 d~l--~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~ 808 (899)
... ++...+.|+++|..... .... |+|||.+...|..
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~~~~~~~~ 215 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNLSFGEWDE 215 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCCChHHHHh
Confidence 884 45567777887765211 1223 8999998877754
No 449
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.59 E-value=8.2e-07 Score=93.56 Aligned_cols=176 Identities=15% Similarity=0.268 Sum_probs=116.9
Q ss_pred CCCCCcCchHHHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc---c
Q 002623 253 KLDPVIGRDDEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---K 327 (899)
Q Consensus 253 ~l~~iiG~~~~i~~~~~~l~~~--~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---~ 327 (899)
.|+.+|+.+..++.++....+- -..++||.|++||||..+|++-.....++ +.+|+.+||.++-... .
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~-------~~pFlalNCA~lPe~~aEsE 274 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRH-------SKPFLALNCASLPEDAAESE 274 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCccc-------CCCeeEeecCCCchhHhHHH
Confidence 4677899999999998875442 23578999999999999999988776443 6899999998873110 0
Q ss_pred ---c-cchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEEEe
Q 002623 328 ---Y-RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGA 390 (899)
Q Consensus 328 ---~-~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I~a 390 (899)
| .|. +.-..+|+.+ .++.+|+|||..+. ...+.-|+++|.+| +|++|+|
T Consensus 275 lFG~apg~--~gk~GffE~A----ngGTVlLDeIgEmS--------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIca 340 (511)
T COG3283 275 LFGHAPGD--EGKKGFFEQA----NGGTVLLDEIGEMS--------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 340 (511)
T ss_pred HhcCCCCC--CCccchhhhc----cCCeEEeehhhhcC--------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEec
Confidence 0 110 1123455544 35688999999987 67888899999766 7889999
Q ss_pred cChhHHHhhh---ccCHHHHccCceEEecCCCHHHHH----HHHHHHHHHHhhhhCCC---CCHHHHHHH
Q 002623 391 TTLDEYRKYI---EKDPALERRFQQVYVDQPNVEDTI----SILRGLRERYELHHGVR---ISDSALVEA 450 (899)
Q Consensus 391 t~~~~~~~~~---~~d~al~~Rf~~i~~~~ps~ee~~----~Il~~~~~~~~~~~~~~---i~~~~l~~~ 450 (899)
|..+-. .+. ..-..|.-|+..+.+..|+..|+. -+.+.+..++....++. ++++.+..+
T Consensus 341 tq~nL~-~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 341 TQVNLV-ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred ccccHH-HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 876532 111 112344458888888888765544 44455666555555553 455554444
No 450
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.3e-06 Score=93.06 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcCCC-CCcEEEcCCCCcHHHHHHHHHHHhhcCCCcccc------CCCeEEEEEcccccccccccchHHHH
Q 002623 263 EIRRCIQILSRRTK-NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL------MNRKLISLDMGALIAGAKYRGEFEDR 335 (899)
Q Consensus 263 ~i~~~~~~l~~~~~-~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l------~~~~~~~l~~~~l~~~~~~~g~~~~~ 335 (899)
..+.+...+...+. ...||+||.|+||+++|..+|+.+.+...+... ....++.+... +.. ..-..+.
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~----~~~-~~I~idq 79 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ----GKG-RLHSIET 79 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC----CCC-CcCcHHH
Confidence 34555666655444 455799999999999999999999875432211 12233333211 100 0011334
Q ss_pred HHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhccCHHHHccC
Q 002623 336 LKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRF 410 (899)
Q Consensus 336 l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~d~al~~Rf 410 (899)
++.+...+... ++.-|++||++|.+. .+++|.|+..||+. ++++|..|+..+ .+-|.+++||
T Consensus 80 iR~l~~~~~~~p~e~~~kv~ii~~ad~mt--------~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SRc 146 (290)
T PRK05917 80 PRAIKKQIWIHPYESPYKIYIIHEADRMT--------LDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSRS 146 (290)
T ss_pred HHHHHHHHhhCccCCCceEEEEechhhcC--------HHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhcc
Confidence 55666655432 344699999999998 78999999999864 677777777765 6889999999
Q ss_pred ceEEecCC
Q 002623 411 QQVYVDQP 418 (899)
Q Consensus 411 ~~i~~~~p 418 (899)
+.+.|+++
T Consensus 147 q~~~~~~~ 154 (290)
T PRK05917 147 LSIHIPME 154 (290)
T ss_pred eEEEccch
Confidence 99999775
No 451
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.55 E-value=8.1e-07 Score=102.80 Aligned_cols=214 Identities=16% Similarity=0.175 Sum_probs=123.2
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhhcC-----CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEE
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILSRR-----TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~~-----~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 317 (899)
.+|.++++|.+++++..+.+-+..|...|... ...-+||+|||||||||+++.||+++ +..+.+-
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQEW 76 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEEe
Confidence 57899999999999998887655555555331 12345889999999999999999998 5554442
Q ss_pred -Eccccc----ccccccc------hHHHH---HHHH-HHHHHh----------hCCCeEEEEccchhhccCCCCCchHHH
Q 002623 318 -DMGALI----AGAKYRG------EFEDR---LKAV-LKEVTE----------SEGQIILFIDEIHTVVGAGATNGAMDA 372 (899)
Q Consensus 318 -~~~~l~----~~~~~~g------~~~~~---l~~l-~~~~~~----------~~~~~IL~iDEi~~l~~~~~~~~~~~~ 372 (899)
+...+. ....|.+ ++..+ ...+ +...+. ...+.||+|||+-.++... ....
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~~f 152 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TSRF 152 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh----HHHH
Confidence 111100 0000111 01111 1111 111111 1235689999998665332 1456
Q ss_pred HHHHhhhhcCC---CeEEEEecC--h---hHHHh-----hhccCHHHHc--cCceEEecCCCHHHHHHHHHHHHHHHhhh
Q 002623 373 GNLLKPMLGRG---ELRCIGATT--L---DEYRK-----YIEKDPALER--RFQQVYVDQPNVEDTISILRGLRERYELH 437 (899)
Q Consensus 373 ~~~L~~~l~~~---~v~~I~at~--~---~~~~~-----~~~~d~al~~--Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~ 437 (899)
.++|++++..+ .+++|.+-+ . ..+.. .--+++.+.. ++..|.|.+-+..-+.+.|..++..-...
T Consensus 153 ~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 153 REALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 67777777643 455555511 1 11100 1134677777 45589999999988888888887753111
Q ss_pred -hC-CCCC--HHHHHHHHHhcccccCCCCChhhHHHHHHHHHH
Q 002623 438 -HG-VRIS--DSALVEAAILSDRYISGRFLPDKAIDLVDEAAA 476 (899)
Q Consensus 438 -~~-~~i~--~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~ 476 (899)
.+ ...+ .+.++.+++.|.|.|+ .|+..|.-.|.
T Consensus 233 ~~~~~~~p~~~~~l~~I~~~s~GDIR------sAIn~LQf~~~ 269 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAESSNGDIR------SAINNLQFWCL 269 (519)
T ss_pred hcCCccCCChHHHHHHHHHhcCchHH------HHHHHHHHHhc
Confidence 11 1222 3457888888766542 35555555554
No 452
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.55 E-value=2.2e-06 Score=99.47 Aligned_cols=175 Identities=15% Similarity=0.209 Sum_probs=116.3
Q ss_pred CCcCchHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHH
Q 002623 256 PVIGRDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFE 333 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~ 333 (899)
.++|....+..+++.+.. ....+++++|++|+||+++|+++...... .+.+++.+||..+...
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~~-------- 204 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNES-------- 204 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCHH--------
Confidence 477888777777665432 34567899999999999999999887532 2678999999875311
Q ss_pred HHHHH-HHHH--------------HHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------Ce
Q 002623 334 DRLKA-VLKE--------------VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------EL 385 (899)
Q Consensus 334 ~~l~~-l~~~--------------~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v 385 (899)
.+.. +|.. ......+++||||||+.|. ...+..|..+++.+ ++
T Consensus 205 -~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 205 -LLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS--------PMMQVRLLRAIQEREVQRVGSNQTISVDV 275 (441)
T ss_pred -HHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC--------HHHHHHHHHHHccCcEEeCCCCceeeece
Confidence 0111 1110 0012346799999999998 66777888888755 46
Q ss_pred EEEEecChhHHHh--hhccCHHHHccCceEEecCCCHHH----HHHHHHHHHHHHhhhhC---CCCCHHHHHHHHHhc
Q 002623 386 RCIGATTLDEYRK--YIEKDPALERRFQQVYVDQPNVED----TISILRGLRERYELHHG---VRISDSALVEAAILS 454 (899)
Q Consensus 386 ~~I~at~~~~~~~--~~~~d~al~~Rf~~i~~~~ps~ee----~~~Il~~~~~~~~~~~~---~~i~~~~l~~~~~ls 454 (899)
++|++|+.+.... .-...+.|..||..+.+..|+..+ +..+++.++.++...++ ..++++++..+....
T Consensus 276 rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (441)
T PRK10365 276 RLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred EEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 7999988775321 112456666788777777777654 45556666666554333 358888887775554
No 453
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=9.1e-07 Score=89.89 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=96.3
Q ss_pred eeEEeccCC-CcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCC------CCCcccccccchhHHHhh----
Q 002623 681 SFMFMGPTG-VGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAP------PGYVGYEEGGQLTEVVRR---- 749 (899)
Q Consensus 681 ~lLl~Gp~G-tGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~------~~~~g~~~~~~l~~~~~~---- 749 (899)
.+||.|..+ +||..++..+++.++..+ +.+... ....++... ...++.++.+.+...+..
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~H----PD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~ 87 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENN----PDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAI 87 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCC----CCEEEEeccccccccCCcccHHHHHHHHHHHhhCccc
Confidence 399999998 999999999999986532 122111 111122111 123444555555555553
Q ss_pred CCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHH
Q 002623 750 RPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMD 829 (899)
Q Consensus 750 ~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (899)
..+.|++|+++|++.....|+||..||+ +.++++||++|+.
T Consensus 88 g~~KViII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~---------------------------- 128 (263)
T PRK06581 88 SGYKVAIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSR---------------------------- 128 (263)
T ss_pred CCcEEEEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCC----------------------------
Confidence 3467999999999999999999999998 4567888887766
Q ss_pred HHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHH
Q 002623 830 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVS 866 (899)
Q Consensus 830 ~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~ 866 (899)
...+.|.+++|| +.+.|+.+......++....+.
T Consensus 129 --~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 129 --AASIISTIRSRC-FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred --hhhCchhHhhce-EEEeCCCCCHHHHHHHHHHhcc
Confidence 577889999999 9999999988666665555443
No 454
>PF13173 AAA_14: AAA domain
Probab=98.50 E-value=7.4e-07 Score=84.36 Aligned_cols=121 Identities=26% Similarity=0.361 Sum_probs=80.0
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhh---CCCeEEEE
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRR---RPYAVILF 757 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~---~~~~vl~l 757 (899)
.++++||.|||||++++.+++.+. ....++++++.+......... . +...+.+ ....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADP--------------D-LLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhh--------------h-hHHHHHHhhccCCcEEEE
Confidence 499999999999999999998885 346788888887644321100 0 1112211 13569999
Q ss_pred eCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCCh
Q 002623 758 DEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRP 837 (899)
Q Consensus 758 DEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 837 (899)
|||+.++ +....+..+.+.+ .++.||+|+...... ......
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l--------------------------~~~~~~ 108 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLL--------------------------SKDIAE 108 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHH--------------------------hhcccc
Confidence 9999996 6777777777753 356677766552111 223345
Q ss_pred HHHhccceEEecCCCCHHHH
Q 002623 838 EFMNRVDEYIVFQPLDRDQI 857 (899)
Q Consensus 838 ~ll~R~d~~i~f~~l~~e~i 857 (899)
.+.+|. ..+.+.|++-.|+
T Consensus 109 ~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 109 SLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred cCCCeE-EEEEECCCCHHHh
Confidence 566888 6889999987654
No 455
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.50 E-value=5.7e-07 Score=94.22 Aligned_cols=114 Identities=16% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchH---HHHHHHHHHHHHhhCCCeEEE
Q 002623 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEF---EDRLKAVLKEVTESEGQIILF 353 (899)
Q Consensus 277 ~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~---~~~l~~l~~~~~~~~~~~IL~ 353 (899)
.+++|+|+||||||+|+.+|+..+.. .+..++.+++.++...-+ +.+ ......++..+.. .-+|+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~-------~g~~v~~it~~~l~~~l~--~~~~~~~~~~~~~l~~l~~---~dlLv 167 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL-------RGKSVLIITVADIMSAMK--DTFSNSETSEEQLLNDLSN---VDLLV 167 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh-------cCCeEEEEEHHHHHHHHH--HHHhhccccHHHHHHHhcc---CCEEE
Confidence 57999999999999999999999854 266788888777653211 110 1112234444432 34999
Q ss_pred EccchhhccCCCCCchHHHHHHHhhhhcC---CCeEEEEecChhH--HHhhhccCHHHHccC
Q 002623 354 IDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDE--YRKYIEKDPALERRF 410 (899)
Q Consensus 354 iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~~v~~I~at~~~~--~~~~~~~d~al~~Rf 410 (899)
|||++..... .-...+|.++++. ....+|.+||... +.+. ++..+.+|+
T Consensus 168 IDDig~~~~s------~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~--~g~ri~sRl 221 (244)
T PRK07952 168 IDEIGVQTES------RYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL--LGERVMDRM 221 (244)
T ss_pred EeCCCCCCCC------HHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH--hChHHHHHH
Confidence 9999876421 1223345555542 2456667777543 3332 356666666
No 456
>PRK09183 transposase/IS protein; Provisional
Probab=98.49 E-value=2.8e-07 Score=98.15 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=68.2
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHh--hCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVR--RRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~--~~~~~vl~lD 758 (899)
+++|+||||||||++|.+|+......+.....+++.++.........- +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~------------~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQ------------GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHC------------CcHHHHHHHHhcCCCEEEEc
Confidence 599999999999999999998875556666666766554321111000 11112221 1234699999
Q ss_pred CCCcc--ChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhc
Q 002623 759 EIEKA--HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (899)
Q Consensus 759 Eid~l--~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~ 808 (899)
|++.. +.+..+.|+++++... .+.-+|+|||.++..|..
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~-----------~~~s~iiTsn~~~~~w~~ 212 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRY-----------EKGSMILTSNLPFGQWDQ 212 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHH-----------hcCcEEEecCCCHHHHHH
Confidence 99874 4566678899887521 112378899998887754
No 457
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.49 E-value=1.5e-06 Score=96.32 Aligned_cols=141 Identities=14% Similarity=0.280 Sum_probs=89.8
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCC--CCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEe
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNT--EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFD 758 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~--~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 758 (899)
+++|+||+|.|||+|.+++++..... +..++++....+.........- +...++-+...-.+++||
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~------------~~~~~Fk~~y~~dlllID 182 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD------------NEMEKFKEKYSLDLLLID 182 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh------------hhHHHHHHhhccCeeeec
Confidence 49999999999999999999988443 3356666666554331111000 111112122233499999
Q ss_pred CCCccCh--HHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 002623 759 EIEKAHS--DVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFR 836 (899)
Q Consensus 759 Eid~l~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (899)
+|+.+.. ..++.|...+.. +.+ .+-.+|+|+...+..+ ..+.
T Consensus 183 Diq~l~gk~~~qeefFh~FN~--l~~--------~~kqIvltsdr~P~~l--------------------------~~~~ 226 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNA--LLE--------NGKQIVLTSDRPPKEL--------------------------NGLE 226 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHH--HHh--------cCCEEEEEcCCCchhh--------------------------cccc
Confidence 9998763 345555554432 000 1126788887765443 3456
Q ss_pred hHHHhccce--EEecCCCCHHHHHHHHHHHHHHHH
Q 002623 837 PEFMNRVDE--YIVFQPLDRDQISSIVRLQVSFSK 869 (899)
Q Consensus 837 p~ll~R~d~--~i~f~~l~~e~i~~I~~~~l~~~~ 869 (899)
|.|.+||.. ++.+.||+.+....|+.+....-+
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 888999955 799999999999999998555443
No 458
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.48 E-value=3.1e-07 Score=104.70 Aligned_cols=172 Identities=20% Similarity=0.299 Sum_probs=116.2
Q ss_pred cCchHHHHHHHHHhhcC--CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccc-----------c
Q 002623 258 IGRDDEIRRCIQILSRR--TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-----------A 324 (899)
Q Consensus 258 iG~~~~i~~~~~~l~~~--~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~-----------~ 324 (899)
++.+..++..+..+.+- ..-++++.|+|||||-.+++++.+... ...+++.+||..+- .
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~--------~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE--------AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc--------ccCCeEEEEeccchHHhhhHHHhccC
Confidence 57778888888877653 446789999999999999999998863 26689999988752 1
Q ss_pred cccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC------------CeEEEEecC
Q 002623 325 GAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG------------ELRCIGATT 392 (899)
Q Consensus 325 ~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~------------~v~~I~at~ 392 (899)
+..+.|...+-.+..+. ...++.||+|||..+. ..++..|+++|+.| +|++|+||+
T Consensus 388 ~GafTga~~kG~~g~~~----~A~gGtlFldeIgd~p--------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath 455 (606)
T COG3284 388 AGAFTGARRKGYKGKLE----QADGGTLFLDEIGDMP--------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATH 455 (606)
T ss_pred ccccccchhccccccce----ecCCCccHHHHhhhch--------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccC
Confidence 11122222222222333 2357799999999987 78888999999866 678899888
Q ss_pred hhHHHhhhccCHHHHc----cCceEEecCCCHHHH---HHHHHHHHHHHhhhhCCCCCHHHHHHHHH
Q 002623 393 LDEYRKYIEKDPALER----RFQQVYVDQPNVEDT---ISILRGLRERYELHHGVRISDSALVEAAI 452 (899)
Q Consensus 393 ~~~~~~~~~~d~al~~----Rf~~i~~~~ps~ee~---~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ 452 (899)
.+- ..+. -+..|+. |+....|..|+..++ ...|..+..+... ....++++++..+..
T Consensus 456 ~dl-~~lv-~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~l~~~~~~~l~~ 519 (606)
T COG3284 456 RDL-AQLV-EQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREND-WRLQLDDDALARLLA 519 (606)
T ss_pred cCH-HHHH-HcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccC-CCccCCHHHHHHHHh
Confidence 763 2222 1233333 777777777776554 4445555555433 467888888876643
No 459
>PRK08181 transposase; Validated
Probab=98.45 E-value=5.5e-07 Score=95.74 Aligned_cols=121 Identities=15% Similarity=0.219 Sum_probs=68.9
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~i 354 (899)
...|++|+||||||||+|+.++++.+.. .|..++.+++..+...-.. ..........+..+. ..-+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~-------~g~~v~f~~~~~L~~~l~~-a~~~~~~~~~l~~l~---~~dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTTDLVQKLQV-ARRELQLESAIAKLD---KFDLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH-------cCCceeeeeHHHHHHHHHH-HHhCCcHHHHHHHHh---cCCEEEE
Confidence 4568999999999999999999998854 2667777776665431100 000011223344443 2349999
Q ss_pred ccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChh--HHHhhhc---cCHHHHccC
Q 002623 355 DEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD--EYRKYIE---KDPALERRF 410 (899)
Q Consensus 355 DEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~--~~~~~~~---~d~al~~Rf 410 (899)
||++.+.... .....+.+++....+++ .+|.|||.+ +|...+. +..++.+|+
T Consensus 174 DDlg~~~~~~--~~~~~Lf~lin~R~~~~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL 230 (269)
T PRK08181 174 DDLAYVTKDQ--AETSVLFELISARYERR--SILITANQPFGEWNRVFPDPAMTLAAVDRL 230 (269)
T ss_pred eccccccCCH--HHHHHHHHHHHHHHhCC--CEEEEcCCCHHHHHHhcCCccchhhHHHhh
Confidence 9998765321 11223344444333443 466666654 3433331 223556665
No 460
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=9.9e-06 Score=87.51 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=96.1
Q ss_pred HHHHHHHHhhcCCCCCc-EEEcCCCCcHHHHHHHHHHHhhcCC---CccccCCCeEEEEEcccccccccccchHHHHHHH
Q 002623 263 EIRRCIQILSRRTKNNP-VLIGEPGVGKTAISEGLAQRIVQGD---VPQALMNRKLISLDMGALIAGAKYRGEFEDRLKA 338 (899)
Q Consensus 263 ~i~~~~~~l~~~~~~~~-LL~Gp~G~GKT~la~~la~~l~~~~---~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~ 338 (899)
.++.+...+......|+ ||+|+.|+||+.+++.+++.+.+.. +.+.-....++.++.. |. . -..+.++.
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~-~--i~vd~Ir~ 76 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DK-D--LSKSEFLS 76 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CC-c--CCHHHHHH
Confidence 34445555555555555 6999999999999999999985532 1111011123333311 11 0 11234555
Q ss_pred HHHHHHhh----CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhccCHHHHccCce
Q 002623 339 VLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQ 412 (899)
Q Consensus 339 l~~~~~~~----~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~d~al~~Rf~~ 412 (899)
+.+.+... ++.-|++||+++.+. ..++|.|+..+++. ...+|.+|+... .+-|.+++||+.
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~--------~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~~ 143 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTS--------NSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQV 143 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccC--------HHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeEE
Confidence 55555432 256799999999887 67888999999864 667777666443 567899999999
Q ss_pred EEecCCCHHHHHHHHH
Q 002623 413 VYVDQPNVEDTISILR 428 (899)
Q Consensus 413 i~~~~ps~ee~~~Il~ 428 (899)
+.|.+|+.++..+.|.
T Consensus 144 ~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 144 FNVKEPDQQKILAKLL 159 (299)
T ss_pred EECCCCCHHHHHHHHH
Confidence 9999999998776554
No 461
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=1.2e-06 Score=83.14 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=67.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc--------------ccchHHHHHHHHH
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK--------------YRGEFEDRLKAVL 340 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~--------------~~g~~~~~l~~l~ 340 (899)
..+.++++||||+|||++++.+++.+.....+.. ..+++.+++........ ...........+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4567899999999999999999998743100000 46777887655321000 0112222233333
Q ss_pred HHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecCh
Q 002623 341 KEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTL 393 (899)
Q Consensus 341 ~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~ 393 (899)
+.+. .....+|+|||+|.+. . ....+.|+.+.++..+.+|.+.++
T Consensus 81 ~~l~-~~~~~~lviDe~~~l~--~-----~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALD-RRRVVLLVIDEADHLF--S-----DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHH-HCTEEEEEEETTHHHH--T-----HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHH-hcCCeEEEEeChHhcC--C-----HHHHHHHHHHHhCCCCeEEEEECh
Confidence 3333 3334699999999985 1 677888888888888888888776
No 462
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.42 E-value=3.6e-06 Score=98.89 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=120.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccc----ccccccccchHHHHHHHHH----HHHHhh
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGA----LIAGAKYRGEFEDRLKAVL----KEVTES 346 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----l~~~~~~~g~~~~~l~~l~----~~~~~~ 346 (899)
....++|.|+.|+||++++++++..+.. ..+|+.+..+. ++.| ++++..++.-- -.....
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~--------~~p~r~~p~~~t~~~L~Gg----~Dl~~~l~~g~~~~~pGlla~ 91 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA--------GTPLRRLPPGIADDRLLGG----LDLAATLRAGRPVAQRGLLAE 91 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC--------CCCcccCCCCCcHHHccCC----chHHhHhhcCCcCCCCCceee
Confidence 4478999999999999999999998832 34565554332 2222 22222221100 000112
Q ss_pred CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC---------------CeEEEEecChhHHHhhhccCHHHHccCc
Q 002623 347 EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRCIGATTLDEYRKYIEKDPALERRFQ 411 (899)
Q Consensus 347 ~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~~~~~~~d~al~~Rf~ 411 (899)
..++||||||+..+. ..+++.|++.|+.| ++.+|++.+..+|. ..+.+++++||.
T Consensus 92 Ah~GvL~lDe~n~~~--------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~--~~L~~~lLDRf~ 161 (584)
T PRK13406 92 ADGGVLVLAMAERLE--------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED--ERAPAALADRLA 161 (584)
T ss_pred ccCCEEEecCcccCC--------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc--cCCCHHhHhheE
Confidence 346799999999987 77899999999877 45668875555554 468899999998
Q ss_pred -eEEecCCCHHHHH-------HHHHHHHHHHhhhhCCCCCHHHHHHHHHhcccccCCCCChhhHHHHHHHHHHhhhhh--
Q 002623 412 -QVYVDQPNVEDTI-------SILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKLKME-- 481 (899)
Q Consensus 412 -~i~~~~ps~ee~~-------~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~~i~~~~~p~~a~~lld~a~~~~~~~-- 481 (899)
.|.+..|+..+.. .|. ...+.+ .++.++++.+.+++.++..+-- ..+.-.+.++.-|.+.+.++
T Consensus 162 l~v~v~~~~~~~~~~~~~~~~~I~-~AR~rl---~~v~v~~~~l~~i~~~~~~~gv--~S~Ra~i~llraARa~AaL~Gr 235 (584)
T PRK13406 162 FHLDLDGLALRDAREIPIDADDIA-AARARL---PAVGPPPEAIAALCAAAAALGI--ASLRAPLLALRAARAAAALAGR 235 (584)
T ss_pred EEEEcCCCChHHhcccCCCHHHHH-HHHHHH---ccCCCCHHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHHHHcCC
Confidence 7899988765432 122 112222 4788999999998888776531 12234455666555555444
Q ss_pred ccCCchhHHHH
Q 002623 482 ITSKPTALDEI 492 (899)
Q Consensus 482 ~~~~~~~l~~~ 492 (899)
....+.++...
T Consensus 236 ~~V~~~dv~~A 246 (584)
T PRK13406 236 TAVEEEDLALA 246 (584)
T ss_pred CCCCHHHHHHH
Confidence 33344444443
No 463
>PF05729 NACHT: NACHT domain
Probab=98.42 E-value=2.9e-06 Score=83.82 Aligned_cols=145 Identities=20% Similarity=0.297 Sum_probs=86.0
Q ss_pred cEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccc---c-------chHHHHHHHHHHHHHhhCC
Q 002623 279 PVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKY---R-------GEFEDRLKAVLKEVTESEG 348 (899)
Q Consensus 279 ~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~---~-------g~~~~~l~~l~~~~~~~~~ 348 (899)
++|+|+||+|||++++.++..+.....+... -.-++.+.+......... . ..........+........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 6899999999999999999999775532211 122344444443221110 0 0011111122233334466
Q ss_pred CeEEEEccchhhccCCCCCchHHHHHHHhhhhcC---CCeEEEEecChhHHHhhhccCHHHHccC---ceEEecCCCHHH
Q 002623 349 QIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR---GELRCIGATTLDEYRKYIEKDPALERRF---QQVYVDQPNVED 422 (899)
Q Consensus 349 ~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~---~~v~~I~at~~~~~~~~~~~d~al~~Rf---~~i~~~~ps~ee 422 (899)
.++|+||.+|.+.......+.......|..++.. .++.+|.++++..+ +.+.+.+ ..+.+.+.+.++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF-------PDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH-------HHHHHhcCCCcEEEECCCCHHH
Confidence 8899999999998644322223344556555544 36777777777654 2244433 457888889999
Q ss_pred HHHHHHHHH
Q 002623 423 TISILRGLR 431 (899)
Q Consensus 423 ~~~Il~~~~ 431 (899)
+.++++...
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 888887654
No 464
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.41 E-value=2.2e-06 Score=89.14 Aligned_cols=131 Identities=27% Similarity=0.354 Sum_probs=80.0
Q ss_pred eEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCC
Q 002623 682 FMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIE 761 (899)
Q Consensus 682 lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid 761 (899)
-.++||+|||||+..+.+|+.+ +..++.++|++-.+...+.++ +.+.... ++.+.|||++
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~ri---------------l~G~~~~--GaW~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSRI---------------LKGLAQS--GAWLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHHH---------------HHHHHHH--T-EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHHH---------------HHHHhhc--Cchhhhhhhh
Confidence 5679999999999999999999 899999999998766555433 2333333 4589999999
Q ss_pred ccChHHHHHHHHhh-------cCC--eeecCCCceeee-CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHH
Q 002623 762 KAHSDVFNVFLQIL-------DDG--RVTDSQGRTVSF-TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAA 831 (899)
Q Consensus 762 ~l~~~~~~~Ll~~l-------e~g--~~~~~~g~~~~~-~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (899)
+++.+++..+-+.+ ..+ .+. -.|..+.. +++-+.+|.|++...
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~-~~g~~i~l~~~~~iFiT~np~y~g-------------------------- 147 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFT-LEGQEIKLNPNCGIFITMNPGYAG-------------------------- 147 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEE-ETTCEEE--TT-EEEEEE-B-CCC--------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHhhcccccccc-cCCCEEEEccceeEEEeeccccCC--------------------------
Confidence 99988766554433 222 222 23555555 477788899985311
Q ss_pred HhcCChHHHhccceEEecCCCCHHHHHHH
Q 002623 832 RSIFRPEFMNRVDEYIVFQPLDRDQISSI 860 (899)
Q Consensus 832 ~~~~~p~ll~R~d~~i~f~~l~~e~i~~I 860 (899)
...+++.|..-| ..|.+..|+...|.++
T Consensus 148 r~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 148 RSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp C--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred cccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 345666676666 6677777765554443
No 465
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1e-05 Score=88.87 Aligned_cols=187 Identities=17% Similarity=0.202 Sum_probs=115.9
Q ss_pred CCCCCCcCchHHHHHHHHHh----hcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc
Q 002623 252 GKLDPVIGRDDEIRRCIQIL----SRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK 327 (899)
Q Consensus 252 ~~l~~iiG~~~~i~~~~~~l----~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~ 327 (899)
+.-..++|++.++..+-+++ ......++.+.|-||+|||.+...+...+.. .......+++||.++.....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-----~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-----SSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-----hcccceeEEEeeccccchHH
Confidence 34455899999988887765 3456678899999999999999988877643 22345668888886531111
Q ss_pred -c-------------cchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHH--hhhhcCCCeEEEEec
Q 002623 328 -Y-------------RGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLL--KPMLGRGELRCIGAT 391 (899)
Q Consensus 328 -~-------------~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L--~~~l~~~~v~~I~at 391 (899)
| .|...+.+..+-.-......+.++++||+|.|...++. +.-.| .+.+-..++.+||.+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-----vLy~lFewp~lp~sr~iLiGiA 296 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-----VLYTLFEWPKLPNSRIILIGIA 296 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-----eeeeehhcccCCcceeeeeeeh
Confidence 1 11111212222222222334789999999999844321 11111 223335688899999
Q ss_pred ChhHHHhhhccCHHHHccCc----eEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHh
Q 002623 392 TLDEYRKYIEKDPALERRFQ----QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAIL 453 (899)
Q Consensus 392 ~~~~~~~~~~~d~al~~Rf~----~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~l 453 (899)
|.-+....+ =|.|..|+. .+.|++++.+++.+|+..-+... .-..+-+.++..++..
T Consensus 297 NslDlTdR~--LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~---~t~~~~~~Aie~~ArK 357 (529)
T KOG2227|consen 297 NSLDLTDRF--LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE---STSIFLNAAIELCARK 357 (529)
T ss_pred hhhhHHHHH--hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc---cccccchHHHHHHHHH
Confidence 988754433 255655542 58899999999999998766542 2223344455544443
No 466
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.38 E-value=2.6e-05 Score=101.34 Aligned_cols=140 Identities=20% Similarity=0.308 Sum_probs=97.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHH-HHHHHHHHHh------hCCC
Q 002623 277 NNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDR-LKAVLKEVTE------SEGQ 349 (899)
Q Consensus 277 ~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~-l~~l~~~~~~------~~~~ 349 (899)
+.++++||+|+|||.++......... ..++-++.+...++.. .+. +...++.-.. ....
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~---------~~~~~~~fs~~ts~~~-----~q~~~~~~~~k~~~~~~~~~~~~~ 193 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQD---------REVYLLNFSSVTSSEL-----LQEIIESKLDKRRSGNYGPPLGKK 193 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhccc---------chheEEeeeeeccHHH-----HHHHHHHHHHHhcccCCCCCCCce
Confidence 78999999999999999988877622 2222255444433221 111 1111111111 1224
Q ss_pred eEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--------------CeEEEEecChhHHHhhhccCHHHHccCceEEe
Q 002623 350 IILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPALERRFQQVYV 415 (899)
Q Consensus 350 ~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--------------~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~ 415 (899)
.++|+||++. +..+..|.++...+++++++-+ ++.+++++++ +..++..+.+.|.|.|..+.+
T Consensus 194 ~~~f~ddinm--p~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~-~~~gr~~i~~r~~r~f~~~~~ 270 (1395)
T KOG3595|consen 194 LVLFVDDINM--PALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNP-PGGGRNDITERFLRHFLIVSL 270 (1395)
T ss_pred eEEEEeccCC--chhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCC-CCCccCcccHHHHHHeeeEee
Confidence 6999999984 3444556778888899888632 7789999998 566778899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 002623 416 DQPNVEDTISILRGLRER 433 (899)
Q Consensus 416 ~~ps~ee~~~Il~~~~~~ 433 (899)
+.|+.+..-+|...+...
T Consensus 271 ~~~~~~sl~~if~~~~~~ 288 (1395)
T KOG3595|consen 271 NYPSQESLTQIFNTILTG 288 (1395)
T ss_pred CCCChhhHHHHHHHHHhc
Confidence 999999999998888775
No 467
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.38 E-value=1.4e-06 Score=90.59 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=83.4
Q ss_pred HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHH
Q 002623 265 RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVT 344 (899)
Q Consensus 265 ~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~ 344 (899)
..+.+.+ .......++||+|||||+.++.+|+.+ |..++.++|++.+.- ..+.+++..+.
T Consensus 23 ~~l~~al--~~~~~~~~~GpagtGKtetik~La~~l----------G~~~~vfnc~~~~~~--------~~l~ril~G~~ 82 (231)
T PF12774_consen 23 LTLTQAL--SLNLGGALSGPAGTGKTETIKDLARAL----------GRFVVVFNCSEQMDY--------QSLSRILKGLA 82 (231)
T ss_dssp HHHHHHH--CTTTEEEEESSTTSSHHHHHHHHHHCT----------T--EEEEETTSSS-H--------HHHHHHHHHHH
T ss_pred HHHHHHh--ccCCCCCCcCCCCCCchhHHHHHHHHh----------CCeEEEecccccccH--------HHHHHHHHHHh
Confidence 3344444 234566899999999999999999999 999999999886532 25778888776
Q ss_pred hhCCCeEEEEccchhhccCCCCCchHHHHHHH-------hhhhcCC---------------CeEEEEecChhHHHhhhcc
Q 002623 345 ESEGQIILFIDEIHTVVGAGATNGAMDAGNLL-------KPMLGRG---------------ELRCIGATTLDEYRKYIEK 402 (899)
Q Consensus 345 ~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L-------~~~l~~~---------------~v~~I~at~~~~~~~~~~~ 402 (899)
.. +.++++||+++|. .++...+ ...+..+ ...+..|+|+ .|....++
T Consensus 83 ~~--GaW~cfdefnrl~--------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np-~y~gr~~L 151 (231)
T PF12774_consen 83 QS--GAWLCFDEFNRLS--------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNP-GYAGRSEL 151 (231)
T ss_dssp HH--T-EEEEETCCCSS--------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B--CCCC--S
T ss_pred hc--Cchhhhhhhhhhh--------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecc-ccCCcccC
Confidence 64 5799999999987 3332222 2222111 3345555554 56666788
Q ss_pred CHHHHccCceEEecCCCHHHHHHH
Q 002623 403 DPALERRFQQVYVDQPNVEDTISI 426 (899)
Q Consensus 403 d~al~~Rf~~i~~~~ps~ee~~~I 426 (899)
++.|+.-|.+|.+..|+...+.++
T Consensus 152 P~nLk~lFRpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 152 PENLKALFRPVAMMVPDLSLIAEI 175 (231)
T ss_dssp -HHHCTTEEEEE--S--HHHHHHH
T ss_pred CHhHHHHhheeEEeCCCHHHHHHH
Confidence 999999999999999998876554
No 468
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.38 E-value=1.5e-06 Score=95.41 Aligned_cols=188 Identities=16% Similarity=0.234 Sum_probs=114.4
Q ss_pred HHHhhccceeccchHHHHHHHHHHHH-HcCCCC---CCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccc
Q 002623 643 LEEELHKRVVGQDPAVKSVAEAIQRS-RAGLSD---PHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEY 718 (899)
Q Consensus 643 l~~~l~~~i~Gq~~~~~~l~~~l~~~-~~~~~~---~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~ 718 (899)
+...+...|+|..+.++++.=.+--. +..+.+ .++-+ ++||.|.|||.|+.+-+.+-+.. |.-....+.-
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDI-NVLLLGDPgtAKSQlLKFvEkvs-----PIaVYTSGKG 398 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDI-NVLLLGDPGTAKSQLLKFVEKVS-----PIAVYTSGKG 398 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccce-eEEEecCCchhHHHHHHHHHhcC-----ceEEEecCCC
Confidence 34445667999998888876554211 111111 13334 79999999999999999888765 1111111000
Q ss_pred hhh-hhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-CCEEE
Q 002623 719 MEK-HAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTVI 795 (899)
Q Consensus 719 ~~~-~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~ii 795 (899)
... -.....+-.+.+..-|.+|| ++--+.+||+.|||+|+|.++-.-++..+||...+.... |-+... +++-+
T Consensus 399 SSAAGLTASV~RD~~tReFylEGG----AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSV 474 (729)
T KOG0481|consen 399 SSAAGLTASVIRDPSTREFYLEGG----AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSV 474 (729)
T ss_pred cccccceeeEEecCCcceEEEecc----eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhh
Confidence 000 00011111122212233333 344567899999999999999888999999987766544 554433 57888
Q ss_pred EEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHH
Q 002623 796 IMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQI 857 (899)
Q Consensus 796 I~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i 857 (899)
+++.|+-...|.+...+++ .=.|.|.+++|||.++.+..--.+..
T Consensus 475 LAAANpvfGRyDd~Kt~~d-----------------NIDf~~TILSRFDmIFIVKD~h~~~~ 519 (729)
T KOG0481|consen 475 LAAANPVFGRYDDTKTGED-----------------NIDFMPTILSRFDMIFIVKDEHDEER 519 (729)
T ss_pred hhhcCCccccccccCCccc-----------------ccchhhhHhhhccEEEEEeccCcchh
Confidence 9999996655544321111 12477999999999988887654433
No 469
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.38 E-value=1e-06 Score=93.32 Aligned_cols=103 Identities=24% Similarity=0.356 Sum_probs=66.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc---ccchHHHHHHHHHHHHHhhCCCeE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK---YRGEFEDRLKAVLKEVTESEGQII 351 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~---~~g~~~~~l~~l~~~~~~~~~~~I 351 (899)
...|++|+||||||||+||-+|++++.. .|..++.+..++++..-+ ..|..+..+. ..+...+ +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~---~~l~~~d---l 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFDEGRLEEKLL---RELKKVD---L 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHhcCchHHHHH---HHhhcCC---E
Confidence 6789999999999999999999999963 277888888777652211 1133333332 3333323 9
Q ss_pred EEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChh
Q 002623 352 LFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD 394 (899)
Q Consensus 352 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~ 394 (899)
|+|||+....... .....+..++.+..++... |.|+|.+
T Consensus 171 LIiDDlG~~~~~~--~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 171 LIIDDIGYEPFSQ--EEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred EEEecccCccCCH--HHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 9999998764221 1223444555555556666 6677654
No 470
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.37 E-value=7.2e-07 Score=84.64 Aligned_cols=108 Identities=19% Similarity=0.346 Sum_probs=70.9
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCC-----CCceEEeccccchhhhhh----hhhcCCCCCC--cccccccchhHHHhh
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNT-----EEALVRIDMSEYMEKHAV----SRLIGAPPGY--VGYEEGGQLTEVVRR 749 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~-----~~~~~~i~~~~~~~~~~~----~~l~g~~~~~--~g~~~~~~l~~~~~~ 749 (899)
.++++||||+|||++++.+++.+... ..+++.++|+.......+ ...++.+... ....-...+...+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 59999999999999999999987421 466778888776533222 2333433222 111111344555566
Q ss_pred CCCeEEEEeCCCcc-ChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCC
Q 002623 750 RPYAVILFDEIEKA-HSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNV 801 (899)
Q Consensus 750 ~~~~vl~lDEid~l-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~ 801 (899)
....+|+|||+|.+ +...++.|..+++. .++.||++.++
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~-------------~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNE-------------SNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCS-------------CBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhC-------------CCCeEEEEECh
Confidence 66579999999999 99999999888874 34566666655
No 471
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.36 E-value=1.1e-05 Score=93.61 Aligned_cols=213 Identities=17% Similarity=0.197 Sum_probs=105.0
Q ss_pred eeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEe-ccccchhhh-hhhhhc
Q 002623 651 VVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRI-DMSEYMEKH-AVSRLI 728 (899)
Q Consensus 651 i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i-~~~~~~~~~-~~~~l~ 728 (899)
+..+..-++.|...+.....+.. .+. .+||+||||||||++++.||+.+ +..+..- +...+.... ......
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~--~~~--iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~~~~~~~~~~~d~~ 93 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSS--PKR--ILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPVSFRESDNQEDDFE 93 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCC--Ccc--eEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCCCcccccccccccc
Confidence 44556666777777765433322 122 49999999999999999999998 3322221 111110000 000000
Q ss_pred C----------CCCCCccc--cc--ccchh--HHHhhCCCeEEEEeCCCccC----hHHHHHHHHhhcCCeeecCCCcee
Q 002623 729 G----------APPGYVGY--EE--GGQLT--EVVRRRPYAVILFDEIEKAH----SDVFNVFLQILDDGRVTDSQGRTV 788 (899)
Q Consensus 729 g----------~~~~~~g~--~~--~~~l~--~~~~~~~~~vl~lDEid~l~----~~~~~~Ll~~le~g~~~~~~g~~~ 788 (899)
+ ....+..+ .. ...+. +.-......||+|||+-... ..+.+.|.+++..+..
T Consensus 94 s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~-------- 165 (519)
T PF03215_consen 94 SDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRC-------- 165 (519)
T ss_pred ccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCC--------
Confidence 0 00000000 00 00000 00011235699999987643 2355555666654321
Q ss_pred eeCCEEEEEec--CCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccc-eEEecCCCCHHHHHHHHHHHH
Q 002623 789 SFTNTVIIMTS--NVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVD-EYIVFQPLDRDQISSIVRLQV 865 (899)
Q Consensus 789 ~~~~~iiI~tt--N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d-~~i~f~~l~~e~i~~I~~~~l 865 (899)
..++||+|- .... +... . ...+ .+...|++++++... .+|.|+|.++.-+.+.+.+.+
T Consensus 166 --~PlV~iiSe~~~~~~---------~~~~-~-~~~~------t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~ 226 (519)
T PF03215_consen 166 --LPLVFIISETESLSG---------DNSY-R-SNSF------TAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRIL 226 (519)
T ss_pred --CCEEEEEecccccCC---------CCcc-c-ccch------hhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHH
Confidence 146666661 1110 0000 0 0000 014578899987553 489999999988888888887
Q ss_pred HHHHhhccc-CCCccCHHHHHHhhccc-cccccc
Q 002623 866 SFSKVSWIY-SPWHFNYEMLVKFCYLA-FTIRSI 897 (899)
Q Consensus 866 ~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~~ 897 (899)
......... ....-..+.|..+|..+ -.||+.
T Consensus 227 ~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsA 260 (519)
T PF03215_consen 227 KKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSA 260 (519)
T ss_pred HHHhhhhcCCccCCChHHHHHHHHHhcCchHHHH
Confidence 766322211 11221233466665543 444443
No 472
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.36 E-value=7.3e-05 Score=90.98 Aligned_cols=162 Identities=18% Similarity=0.228 Sum_probs=97.9
Q ss_pred cCCCCCcEEEcCCCCcHHHHH-HHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhh-----
Q 002623 273 RRTKNNPVLIGEPGVGKTAIS-EGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTES----- 346 (899)
Q Consensus 273 ~~~~~~~LL~Gp~G~GKT~la-~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~----- 346 (899)
....++++++||||+|||.+- -+|-.++ ...++.+|.+--..... .+.-+-......
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~T~s-------~ls~Ler~t~yy~~tg~ 1553 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTMTPS-------KLSVLERETEYYPNTGV 1553 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccCCHH-------HHHHHHhhceeeccCCe
Confidence 356678999999999999963 3444444 67788887654332111 121111111100
Q ss_pred --------CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcC-C-------------CeEEEEecChhHHHhhhccCH
Q 002623 347 --------EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGR-G-------------ELRCIGATTLDEYRKYIEKDP 404 (899)
Q Consensus 347 --------~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~-~-------------~v~~I~at~~~~~~~~~~~d~ 404 (899)
-...|||-|||+ .+.+..-+..++.-.|++++++ | ++.+.|+||+..-.+......
T Consensus 1554 ~~l~PK~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245 1554 VRLYPKPVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred EEEccCcchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHH
Confidence 013599999998 3444444555555567777764 2 788999999986444444445
Q ss_pred HHHccCceEEecCCCHHHHHHHHHHHHHHHhhhh-C-CCCCHHHHHHHHHh
Q 002623 405 ALERRFQQVYVDQPNVEDTISILRGLRERYELHH-G-VRISDSALVEAAIL 453 (899)
Q Consensus 405 al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~-~-~~i~~~~l~~~~~l 453 (899)
.|.+|--.|.+..|....+.+|...+++...... . -.++.....+.+++
T Consensus 1632 Rf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~l 1682 (3164)
T COG5245 1632 RFIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVEL 1682 (3164)
T ss_pred HHhcCceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5666655688889988888888876665422111 1 13455555555554
No 473
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.9e-06 Score=94.42 Aligned_cols=183 Identities=17% Similarity=0.267 Sum_probs=118.0
Q ss_pred ccceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC--CCCceEEeccccchhhhhhh
Q 002623 648 HKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN--TEEALVRIDMSEYMEKHAVS 725 (899)
Q Consensus 648 ~~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~--~~~~~~~i~~~~~~~~~~~~ 725 (899)
...+.|.+..+..+.+.+.....+.. .|++.+.|-||||||.+-..+-..+-. .....+++||.++....++.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t-----~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNT-----SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhccc-----CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 45688888888888888765543322 236999999999999887755554422 12245899999876654432
Q ss_pred -hhcCCC-CCCcccccccc----hhHHHhhC-CCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEe
Q 002623 726 -RLIGAP-PGYVGYEEGGQ----LTEVVRRR-PYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMT 798 (899)
Q Consensus 726 -~l~g~~-~~~~g~~~~~~----l~~~~~~~-~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 798 (899)
.+++.- ...++-..+.+ +.....+. ..=|+++||+|.+...-+..|+.+++.-.+.. .++++|+.
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~--------sr~iLiGi 295 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPN--------SRIILIGI 295 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCc--------ceeeeeee
Confidence 333221 11111111112 22222222 24589999999999888899999888643332 46777777
Q ss_pred cCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhcc---ceEEecCCCCHHHHHHHHHHHHHHHHh
Q 002623 799 SNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRV---DEYIVFQPLDRDQISSIVRLQVSFSKV 870 (899)
Q Consensus 799 tN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~---d~~i~f~~l~~e~i~~I~~~~l~~~~~ 870 (899)
+|. -++ .++|-|-|..|+ ...+.|+||+.+||.+|+...+.....
T Consensus 296 ANs-------------------lDl--------TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t 343 (529)
T KOG2227|consen 296 ANS-------------------LDL--------TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST 343 (529)
T ss_pred hhh-------------------hhH--------HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc
Confidence 776 112 334445555544 247999999999999999999887653
No 474
>PRK06921 hypothetical protein; Provisional
Probab=98.34 E-value=6.3e-07 Score=95.64 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=65.2
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCC-CCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNT-EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 759 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~-~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 759 (899)
+++|+||||+|||+|+.+|++.+... +...+++...++.... ...++ ........+... .+|+|||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~~~---------~~~~~~~~~~~~--dlLiIDD 185 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDDFD---------LLEAKLNRMKKV--EVLFIDD 185 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHHHH---------HHHHHHHHhcCC--CEEEEec
Confidence 59999999999999999999998654 5666676665543221 00010 001112233334 4999999
Q ss_pred CCc-------cChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhh
Q 002623 760 IEK-------AHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYIL 807 (899)
Q Consensus 760 id~-------l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~ 807 (899)
++. .....++.|..+++... . .+.-+|+|||..+..+.
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R~-~---------~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYRY-L---------NHKPILISSELTIDELL 230 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHH-H---------CCCCEEEECCCCHHHHh
Confidence 943 44555677888886521 0 11236889999776653
No 475
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=9.1e-06 Score=86.98 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=95.4
Q ss_pred chHHHHHHHHHhhcCCCC-CcEEEcCCCCcHHHHHHHHHHHhhcCCCcc-----cc---------CCCeEEEEEcccccc
Q 002623 260 RDDEIRRCIQILSRRTKN-NPVLIGEPGVGKTAISEGLAQRIVQGDVPQ-----AL---------MNRKLISLDMGALIA 324 (899)
Q Consensus 260 ~~~~i~~~~~~l~~~~~~-~~LL~Gp~G~GKT~la~~la~~l~~~~~p~-----~l---------~~~~~~~l~~~~l~~ 324 (899)
+...++.+...+.+.+.. ..||+|| +||+++|+.+|+.+.+.+... .. ....++.+...
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~---- 80 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ---- 80 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC----
Confidence 344566666666555544 4599996 689999999999998754211 00 11223333221
Q ss_pred cccccchHHHHHHHHHHHHHhh---CCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhh
Q 002623 325 GAKYRGEFEDRLKAVLKEVTES---EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKY 399 (899)
Q Consensus 325 ~~~~~g~~~~~l~~l~~~~~~~---~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~ 399 (899)
|. .-..+.++.+...+... ++.-|++||++|.+. ..+.|.|+..||+. +.++|..|+..+
T Consensus 81 ~~---~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~--------~~AaNaLLKtLEEPp~~t~~iL~t~~~~---- 145 (290)
T PRK07276 81 GQ---VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH--------VNAANSLLKVIEEPQSEIYIFLLTNDEN---- 145 (290)
T ss_pred CC---cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC--------HHHHHHHHHHhcCCCCCeEEEEEECChh----
Confidence 11 11233456665555432 345699999999998 77899999999865 577777776665
Q ss_pred hccCHHHHccCceEEecCCCHHHHHHHH
Q 002623 400 IEKDPALERRFQQVYVDQPNVEDTISIL 427 (899)
Q Consensus 400 ~~~d~al~~Rf~~i~~~~ps~ee~~~Il 427 (899)
.+-|.+++||+.|.|+. +.++..+++
T Consensus 146 -~lLpTI~SRcq~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 146 -KVLPTIKSRTQIFHFPK-NEAYLIQLL 171 (290)
T ss_pred -hCchHHHHcceeeeCCC-cHHHHHHHH
Confidence 67899999999999965 555544444
No 476
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.33 E-value=1.9e-06 Score=94.32 Aligned_cols=118 Identities=23% Similarity=0.302 Sum_probs=70.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc---ccchHHHHHHHHHHHHHhhCCCeEE
Q 002623 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK---YRGEFEDRLKAVLKEVTESEGQIIL 352 (899)
Q Consensus 276 ~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~---~~g~~~~~l~~l~~~~~~~~~~~IL 352 (899)
..+++|+||||||||+|+.++|+.+.. .+..++.++...+..... +.... .....+..+... =+|
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~-------~g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~---DLL 250 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD-------RGKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINC---DLL 250 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-------CCCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccC---CEE
Confidence 388999999999999999999999854 367888888776643110 11100 011113333322 299
Q ss_pred EEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChh--HHHhhhccCHHHHccC
Q 002623 353 FIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLD--EYRKYIEKDPALERRF 410 (899)
Q Consensus 353 ~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~--~~~~~~~~d~al~~Rf 410 (899)
+|||++...... .....+.+++.....++. .+|.|||.. ++.. ..++.+.+|+
T Consensus 251 IIDDlG~e~~t~--~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~--~~~eri~SRL 305 (329)
T PRK06835 251 IIDDLGTEKITE--FSKSELFNLINKRLLRQK-KMIISTNLSLEELLK--TYSERISSRL 305 (329)
T ss_pred EEeccCCCCCCH--HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHH--HHhHHHHHHH
Confidence 999998764221 122334455555454444 456666643 3322 2367788887
No 477
>PHA00729 NTP-binding motif containing protein
Probab=98.32 E-value=2.3e-06 Score=87.59 Aligned_cols=127 Identities=12% Similarity=0.180 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCCCCcEEEcCCCCcHHHHHHHHHHHhhcC--CCc----cccCCCeEEEEEcccccccccccchHHHHHHH
Q 002623 265 RRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQG--DVP----QALMNRKLISLDMGALIAGAKYRGEFEDRLKA 338 (899)
Q Consensus 265 ~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~--~~p----~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~ 338 (899)
+.+++.+......|++|+|+||||||++|.+|++.+... .+. ....+...+.++..++ ...++.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~L----------l~~L~~ 75 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDA----------LEKIQD 75 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHH----------HHHHHH
Confidence 345555555666799999999999999999999987310 000 0001222333332222 122222
Q ss_pred HHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccCceEEecCC
Q 002623 339 VLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQP 418 (899)
Q Consensus 339 l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~~p 418 (899)
.+.. .....+|+|||+..-..... .. .+ ....++.+.+++++|++.+.|..+
T Consensus 76 a~~~---~~~~dlLIIDd~G~~~~~~~----------wh--~~-------------~~~~yf~L~~aLrSR~~l~il~~l 127 (226)
T PHA00729 76 AIDN---DYRIPLIIFDDAGIWLSKYV----------WY--ED-------------YMKTFYKIYALIRTRVSAVIFTTP 127 (226)
T ss_pred HHhc---CCCCCEEEEeCCchhhcccc----------hh--hh-------------ccchHHHHHHHHHhhCcEEEEecC
Confidence 2211 11124889999864431100 00 00 012234667899999999999999
Q ss_pred CHHHHHHHHHH
Q 002623 419 NVEDTISILRG 429 (899)
Q Consensus 419 s~ee~~~Il~~ 429 (899)
+.+++...++.
T Consensus 128 s~edL~~~Lr~ 138 (226)
T PHA00729 128 SPEDLAFYLRE 138 (226)
T ss_pred CHHHHHHHHHh
Confidence 99988887764
No 478
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.32 E-value=1.7e-06 Score=94.02 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=69.4
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEI 760 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 760 (899)
+++|+||+|||||+|+.+|++.+...+.....+.++++..... ..++.. ........+...+ ||+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk--~~~~~~-------~~~~~l~~l~~~d--lLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK--NSISDG-------SVKEKIDAVKEAP--VLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH--HHHhcC-------cHHHHHHHhcCCC--EEEEecC
Confidence 5999999999999999999999977777777777777644321 111110 0012233444554 9999999
Q ss_pred Ccc--ChHHHHHHHH-hhcCCeeecCCCceeeeCCEEEEEecCCChhhhhc
Q 002623 761 EKA--HSDVFNVFLQ-ILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILN 808 (899)
Q Consensus 761 d~l--~~~~~~~Ll~-~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~ 808 (899)
..- ++.....++. +++. ++. .+.-.|+|||...+.|..
T Consensus 227 G~e~~s~~~~~~ll~~Il~~-R~~---------~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQY-RMQ---------EELPTFFTSNFDFDELEH 267 (306)
T ss_pred CCccccHHHHHHHHHHHHHH-HHH---------CCCeEEEECCCCHHHHHH
Confidence 754 4455544555 4443 111 234578999998877755
No 479
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.31 E-value=1.1e-05 Score=90.21 Aligned_cols=200 Identities=14% Similarity=0.163 Sum_probs=111.8
Q ss_pred ccHHHHHhcCCCCCCcCchHHHHHHHHHhh-----cCC--CCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEE
Q 002623 243 KDLTAMASAGKLDPVIGRDDEIRRCIQILS-----RRT--KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLI 315 (899)
Q Consensus 243 ~~l~~~~~~~~l~~iiG~~~~i~~~~~~l~-----~~~--~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~ 315 (899)
..|.++++|.+++++--+.+-|..|-+.|. ... .+-+||+||+||||||.++.|++++ |..++
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~~~~ 139 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GYQLI 139 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Cceee
Confidence 568999999999998777765555554443 222 2345889999999999999999998 76666
Q ss_pred EEE-c------cccc---cccc--ccchHHHHHHHHHHHHHh-----------hCCCeEEEEccchhhccCCCCCchHHH
Q 002623 316 SLD-M------GALI---AGAK--YRGEFEDRLKAVLKEVTE-----------SEGQIILFIDEIHTVVGAGATNGAMDA 372 (899)
Q Consensus 316 ~l~-~------~~l~---~~~~--~~g~~~~~l~~l~~~~~~-----------~~~~~IL~iDEi~~l~~~~~~~~~~~~ 372 (899)
+-. . .-+. .+.. |..... ........+.. ...+.+|||||+-..+... .....
T Consensus 140 Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~-~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f 215 (634)
T KOG1970|consen 140 EWSNPINLKEPENLHNETSFLMFPYQSQLA-VFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETF 215 (634)
T ss_pred eecCCccccccccccccchhcccchhhHHH-HHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHH
Confidence 533 1 1111 1111 111111 11112222211 1345689999997776432 12344
Q ss_pred HHHHhhhhcCCC--eEEEEec-----ChhHHHhhhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhh-CCCCC-
Q 002623 373 GNLLKPMLGRGE--LRCIGAT-----TLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHH-GVRIS- 443 (899)
Q Consensus 373 ~~~L~~~l~~~~--v~~I~at-----~~~~~~~~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~-~~~i~- 443 (899)
.+.|..+...|. +++|.|- +.+.|+.+ ..|-...-|+..|.|.+-...-+.+.|..++....... ++.+.
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf-~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLF-PKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhhhc-hhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 566665556653 3333221 22334332 23333445788899999888888888877776532111 12222
Q ss_pred HHHHHHHHHhcccc
Q 002623 444 DSALVEAAILSDRY 457 (899)
Q Consensus 444 ~~~l~~~~~ls~~~ 457 (899)
...++.++.-+.+.
T Consensus 295 ~~~v~~i~~~s~GD 308 (634)
T KOG1970|consen 295 TAEVELICQGSGGD 308 (634)
T ss_pred hHHHHHHHHhcCcc
Confidence 23345555555543
No 480
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.29 E-value=1.4e-06 Score=97.76 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=87.6
Q ss_pred hccceeccchHHHHHHHHHHHHH----cCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcC------CCCceEEeccc
Q 002623 647 LHKRVVGQDPAVKSVAEAIQRSR----AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFN------TEEALVRIDMS 716 (899)
Q Consensus 647 l~~~i~Gq~~~~~~l~~~l~~~~----~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~------~~~~~~~i~~~ 716 (899)
+-..|+|+..++.++.-++--.. .+.+..++-+ |+||+|.|||||+.+-+.+++...+ .|..-+-+.+.
T Consensus 447 iaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDi-nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~ 525 (854)
T KOG0477|consen 447 IAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDI-NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAY 525 (854)
T ss_pred hCchhhchHHHHHHHHHHHhcCCccCCCCCceeccce-eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEE
Confidence 44578999999998888774221 1222233344 7999999999999999999987732 11111111111
Q ss_pred cchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-CCEE
Q 002623 717 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF-TNTV 794 (899)
Q Consensus 717 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~i 794 (899)
-. ++.+. ..|+ -+ .+++--+..||.+|||+|+|+..-.-.+-.+||...+..+. |..... ..|.
T Consensus 526 v~--KdPvt------rEWT--LE----aGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArct 591 (854)
T KOG0477|consen 526 VR--KDPVT------REWT--LE----AGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCT 591 (854)
T ss_pred Ee--eCCcc------ceee--ec----cCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhh
Confidence 00 00000 0000 00 13344567789999999999988777888889887766654 433333 5789
Q ss_pred EEEecCC
Q 002623 795 IIMTSNV 801 (899)
Q Consensus 795 iI~ttN~ 801 (899)
+|+++|+
T Consensus 592 vIAAanP 598 (854)
T KOG0477|consen 592 VIAAANP 598 (854)
T ss_pred hheecCC
Confidence 9999999
No 481
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=8.2e-06 Score=85.05 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=84.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCcccc------------CCCeEEEEEcccccccccccchHHHHHHHHHHH
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQAL------------MNRKLISLDMGALIAGAKYRGEFEDRLKAVLKE 342 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l------------~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~ 342 (899)
.+...||+||+|+||..+|.++|+.+.+.+..... ....++.+.... ..-..+.++++...
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-------~~I~id~ir~l~~~ 78 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-------NPIKKEDALSIINK 78 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-------ccCCHHHHHHHHHH
Confidence 44567999999999999999999999874321101 111222221110 01112334445444
Q ss_pred HHh----hCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--CeEEEEecChhHHHhhhccCHHHHccCceEEec
Q 002623 343 VTE----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--ELRCIGATTLDEYRKYIEKDPALERRFQQVYVD 416 (899)
Q Consensus 343 ~~~----~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~--~v~~I~at~~~~~~~~~~~d~al~~Rf~~i~~~ 416 (899)
+.. .++.-|++||++|.+. ..+.|.|+..+|+. +.++|..|+..+ .+-|.+++||+.+.|+
T Consensus 79 l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~~ 145 (261)
T PRK05818 79 LNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVVL 145 (261)
T ss_pred HccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeecC
Confidence 432 1245799999999998 78899999999965 677777777665 6889999999988887
Q ss_pred CCC
Q 002623 417 QPN 419 (899)
Q Consensus 417 ~ps 419 (899)
.+.
T Consensus 146 ~~~ 148 (261)
T PRK05818 146 SKE 148 (261)
T ss_pred Chh
Confidence 763
No 482
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.27 E-value=1e-06 Score=88.97 Aligned_cols=47 Identities=34% Similarity=0.622 Sum_probs=33.3
Q ss_pred CCcCchHHHHHHHHHhh---cCCCCCcEEEcCCCCcHHHHHHHHHHHhhc
Q 002623 256 PVIGRDDEIRRCIQILS---RRTKNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (899)
Q Consensus 256 ~iiG~~~~i~~~~~~l~---~~~~~~~LL~Gp~G~GKT~la~~la~~l~~ 302 (899)
+++||+++++++...+. ...+++++|+|++|+|||++++.+...+..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999883 234577899999999999999999998855
No 483
>PRK06526 transposase; Provisional
Probab=98.26 E-value=1.3e-06 Score=92.46 Aligned_cols=123 Identities=24% Similarity=0.353 Sum_probs=69.2
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccc---cccchHHHHHHHHHHHHHhhCCCeE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGA---KYRGEFEDRLKAVLKEVTESEGQII 351 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~---~~~g~~~~~l~~l~~~~~~~~~~~I 351 (899)
...|++|+||||||||+++.+|+..+... |..++.+.+..++... ...|. +...+..+ ...-+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~~~~~~~----~~~~l~~l---~~~dl 162 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAAAHHAGR----LQAELVKL---GRYPL 162 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHHHHhcCc----HHHHHHHh---ccCCE
Confidence 45689999999999999999999988542 5555555554443211 01111 22222322 23459
Q ss_pred EEEccchhhccCCCCCchHHHHHHHhhhh----cCCCeEEEEecChh--HHHhhhccCH----HHHccC----ceEEecC
Q 002623 352 LFIDEIHTVVGAGATNGAMDAGNLLKPML----GRGELRCIGATTLD--EYRKYIEKDP----ALERRF----QQVYVDQ 417 (899)
Q Consensus 352 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l----~~~~v~~I~at~~~--~~~~~~~~d~----al~~Rf----~~i~~~~ 417 (899)
|+|||++.+... ....+.|..++ +++ .+|.+||.+ .|...+. |+ ++.+|+ ..|.|.-
T Consensus 163 LIIDD~g~~~~~------~~~~~~L~~li~~r~~~~--s~IitSn~~~~~w~~~~~-d~~~a~ai~dRl~~~~~~i~~~g 233 (254)
T PRK06526 163 LIVDEVGYIPFE------PEAANLFFQLVSSRYERA--SLIVTSNKPFGRWGEVFG-DDVVAAAMIDRLVHHAEVISLKG 233 (254)
T ss_pred EEEcccccCCCC------HHHHHHHHHHHHHHHhcC--CEEEEcCCCHHHHHHHcC-ChHHHHHHHHHHhcCceEEeecC
Confidence 999999977522 23334454544 333 356666654 3444332 32 345565 2455555
Q ss_pred CCH
Q 002623 418 PNV 420 (899)
Q Consensus 418 ps~ 420 (899)
++.
T Consensus 234 ~s~ 236 (254)
T PRK06526 234 DSY 236 (254)
T ss_pred CCc
Confidence 543
No 484
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.23 E-value=1.2e-06 Score=87.70 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=58.2
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc---ccchHHHHHHHHHHHHHhhCCCeE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK---YRGEFEDRLKAVLKEVTESEGQII 351 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~---~~g~~~~~l~~l~~~~~~~~~~~I 351 (899)
...|++|+||||||||+||.++++++.. .+..+..++.+++...-+ ..+. ....+..+.. .-+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-------~g~~v~f~~~~~L~~~l~~~~~~~~----~~~~~~~l~~---~dl 111 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-------KGYSVLFITASDLLDELKQSRSDGS----YEELLKRLKR---VDL 111 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-------TT--EEEEEHHHHHHHHHCCHCCTT----HCHHHHHHHT---SSC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-------CCcceeEeecCceeccccccccccc----hhhhcCcccc---ccE
Confidence 4578999999999999999999998865 377888888777642221 1122 2234444443 239
Q ss_pred EEEccchhhccCCCCCchHHHHHHHhhhhcC--CCeEEEEecChhH
Q 002623 352 LFIDEIHTVVGAGATNGAMDAGNLLKPMLGR--GELRCIGATTLDE 395 (899)
Q Consensus 352 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~--~~v~~I~at~~~~ 395 (899)
|+|||+...... ....+.|..+++. ++-..|.|||...
T Consensus 112 LilDDlG~~~~~------~~~~~~l~~ii~~R~~~~~tIiTSN~~~ 151 (178)
T PF01695_consen 112 LILDDLGYEPLS------EWEAELLFEIIDERYERKPTIITSNLSP 151 (178)
T ss_dssp EEEETCTSS---------HHHHHCTHHHHHHHHHT-EEEEEESS-H
T ss_pred ecccccceeeec------ccccccchhhhhHhhcccCeEeeCCCch
Confidence 999999754311 2233334444431 1224666888654
No 485
>PF05729 NACHT: NACHT domain
Probab=98.22 E-value=4.8e-06 Score=82.30 Aligned_cols=146 Identities=16% Similarity=0.257 Sum_probs=85.1
Q ss_pred eeEEeccCCCcHHHHHHHHHHHhcCCC------CceEEeccccchhhh---hhhhhcCC-CCCCcccccccchhHHHhhC
Q 002623 681 SFMFMGPTGVGKTELAKALASYMFNTE------EALVRIDMSEYMEKH---AVSRLIGA-PPGYVGYEEGGQLTEVVRRR 750 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~l~~~~------~~~~~i~~~~~~~~~---~~~~l~g~-~~~~~g~~~~~~l~~~~~~~ 750 (899)
.++++|+||+|||++++.++..+.... .-.+.+.+.+..... .+..++.. .....+.. ...+.......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-EELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-HHHHHHHHHcC
Confidence 389999999999999999998884322 123455555554332 12222211 11111100 01233455567
Q ss_pred CCeEEEEeCCCccChHHH--------HHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHH
Q 002623 751 PYAVILFDEIEKAHSDVF--------NVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYET 822 (899)
Q Consensus 751 ~~~vl~lDEid~l~~~~~--------~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~ 822 (899)
+..+|+||.+|.+..... +.|.+++... ..+++.+|+|+.+.... .
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r~~~~~----------------~ 134 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSRPRAFP----------------D 134 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEcCChHH----------------H
Confidence 778999999999876432 2344455431 12467788887762210 0
Q ss_pred HHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHHHHHHHHHH
Q 002623 823 IKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 823 ~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~I~~~~l~~ 867 (899)
+...+.. . ..+.+.+++.+++.+++++++..
T Consensus 135 --------~~~~~~~-----~-~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 135 --------LRRRLKQ-----A-QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred --------HHHhcCC-----C-cEEEECCCCHHHHHHHHHHHhhc
Confidence 0111111 1 57899999999999999988753
No 486
>PRK06921 hypothetical protein; Provisional
Probab=98.21 E-value=4e-06 Score=89.55 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=66.3
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFI 354 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~i 354 (899)
..++++|+||||+|||+|+.++++.+.... +..++.+....+.... ...+ ......+..+. ..-+|+|
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~l--~~~~-~~~~~~~~~~~---~~dlLiI 183 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDL--KDDF-DLLEAKLNRMK---KVEVLFI 183 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHHH--HHHH-HHHHHHHHHhc---CCCEEEE
Confidence 457899999999999999999999985421 5667777655543211 0011 11222233332 2349999
Q ss_pred ccchh-hccCCCCC--chHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCHHHHccC
Q 002623 355 DEIHT-VVGAGATN--GAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRF 410 (899)
Q Consensus 355 DEi~~-l~~~~~~~--~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~~Rf 410 (899)
||++. +.+..... ....+..++.....++.. +|.|||...- ....+++.+.+|+
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~-tIitsn~~~~-el~~~~~~l~sRi 240 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKP-ILISSELTID-ELLDIDEALGSRI 240 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHCCCC-EEEECCCCHH-HHhhhhhHHHHHH
Confidence 99954 22221111 112344555544444443 4556665432 1122356666654
No 487
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.21 E-value=2.9e-05 Score=73.65 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=76.4
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHhhcCCC-------ccc-----cCCCeEEEEEccc--c-----cccc---ccc---c
Q 002623 276 KNNPVLIGEPGVGKTAISEGLAQRIVQGDV-------PQA-----LMNRKLISLDMGA--L-----IAGA---KYR---G 330 (899)
Q Consensus 276 ~~~~LL~Gp~G~GKT~la~~la~~l~~~~~-------p~~-----l~~~~~~~l~~~~--l-----~~~~---~~~---g 330 (899)
...+.+.|+||+||||++.-++..+..... |+. ..|..++.++-.. . .++. +|. .
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 356899999999999999999999865321 111 1222333332111 0 0000 011 1
Q ss_pred hHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCCCeEEEEecChhHHHhhhccCH---HHH
Q 002623 331 EFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDP---ALE 407 (899)
Q Consensus 331 ~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~---al~ 407 (899)
.++.-.-..+..|....+ +++||||..+--.. ......+..+|.++.. +|++-... .-+| .++
T Consensus 85 ~le~i~~~al~rA~~~aD--vIIIDEIGpMElks-----~~f~~~ve~vl~~~kp-liatlHrr------sr~P~v~~ik 150 (179)
T COG1618 85 GLEEIAIPALRRALEEAD--VIIIDEIGPMELKS-----KKFREAVEEVLKSGKP-LIATLHRR------SRHPLVQRIK 150 (179)
T ss_pred HHHHHhHHHHHHHhhcCC--EEEEecccchhhcc-----HHHHHHHHHHhcCCCc-EEEEEecc------cCChHHHHhh
Confidence 223222333344433323 89999998663221 4455667777777766 56654333 1233 344
Q ss_pred ccCceEEecCCCHHHHHHHHHHHHHHH
Q 002623 408 RRFQQVYVDQPNVEDTISILRGLRERY 434 (899)
Q Consensus 408 ~Rf~~i~~~~ps~ee~~~Il~~~~~~~ 434 (899)
+++..+.| .+++.+-.|+..++..+
T Consensus 151 ~~~~v~v~--lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 151 KLGGVYVF--LTPENRNRILNEILSVL 175 (179)
T ss_pred hcCCEEEE--EccchhhHHHHHHHHHh
Confidence 45554443 55555557776666543
No 488
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.20 E-value=1.3e-05 Score=91.63 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=42.7
Q ss_pred cCCCCCCcCchHHHHHHHHHhhc------CCCCCcEEEcCCCCcHHHHHHHHHHHhhc
Q 002623 251 AGKLDPVIGRDDEIRRCIQILSR------RTKNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (899)
Q Consensus 251 ~~~l~~iiG~~~~i~~~~~~l~~------~~~~~~LL~Gp~G~GKT~la~~la~~l~~ 302 (899)
-.-|++++|.++.+.++++.|.. ..+.-++|+||||+|||+||+.|++.+..
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 34578899999999999998822 23346789999999999999999998743
No 489
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.19 E-value=3e-06 Score=88.80 Aligned_cols=174 Identities=20% Similarity=0.337 Sum_probs=87.9
Q ss_pred eccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhhhhhhh-----
Q 002623 652 VGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHAVSR----- 726 (899)
Q Consensus 652 ~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~~~~~~----- 726 (899)
+|.+..++.|.+.+... +..+++++||.|+|||++.+.+.+.+...+...+.+++...........
T Consensus 2 ~gR~~el~~l~~~l~~~---------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESG---------PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh---------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 56666677777666431 1115999999999999999999998833222233333322211111111
Q ss_pred --------hcCCC-CCCcc-----------cccccchhHHHhhC-CCeEEEEeCCCccC------hHHHHHHHHhhcCCe
Q 002623 727 --------LIGAP-PGYVG-----------YEEGGQLTEVVRRR-PYAVILFDEIEKAH------SDVFNVFLQILDDGR 779 (899)
Q Consensus 727 --------l~g~~-~~~~g-----------~~~~~~l~~~~~~~-~~~vl~lDEid~l~------~~~~~~Ll~~le~g~ 779 (899)
.++.. +...+ ......+.+.+.+. ...||+|||++.+. +.....|...++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 01110 11000 01112233334432 34899999999988 566777777776511
Q ss_pred eecCCCceeeeCCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCCHHHHHH
Q 002623 780 VTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISS 859 (899)
Q Consensus 780 ~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~~e~i~~ 859 (899)
...++.+|+++...+ + ... +. .-.+++.+|+.. +.++|++.++..+
T Consensus 153 ---------~~~~~~~v~~~S~~~--~-----------------~~~----~~-~~~~~~~~~~~~-~~l~~l~~~e~~~ 198 (234)
T PF01637_consen 153 ---------SQQNVSIVITGSSDS--L-----------------MEE----FL-DDKSPLFGRFSH-IELKPLSKEEARE 198 (234)
T ss_dssp -----------TTEEEEEEESSHH--H-----------------HHH----TT--TTSTTTT---E-EEE----HHHHHH
T ss_pred ---------ccCCceEEEECCchH--H-----------------HHH----hh-cccCccccccce-EEEeeCCHHHHHH
Confidence 123444444443310 0 000 01 113457799966 9999999999999
Q ss_pred HHHHHHHHH
Q 002623 860 IVRLQVSFS 868 (899)
Q Consensus 860 I~~~~l~~~ 868 (899)
++...+.+.
T Consensus 199 ~~~~~~~~~ 207 (234)
T PF01637_consen 199 FLKELFKEL 207 (234)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 998877765
No 490
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.17 E-value=3.8e-06 Score=86.14 Aligned_cols=152 Identities=19% Similarity=0.310 Sum_probs=93.7
Q ss_pred CcCchHHHHHHHHHhhc---CCCCCcEEEcCCCCcHHHHHHHHHHHhhc-CCCccccCCCeEEEEEcccccccc------
Q 002623 257 VIGRDDEIRRCIQILSR---RTKNNPVLIGEPGVGKTAISEGLAQRIVQ-GDVPQALMNRKLISLDMGALIAGA------ 326 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~---~~~~~~LL~Gp~G~GKT~la~~la~~l~~-~~~p~~l~~~~~~~l~~~~l~~~~------ 326 (899)
|.-+.+.+.++++++.+ +...++||.||+|.||+.||+.+.+.-.. .+. ..+|+++||..+...+
T Consensus 186 iatrnp~fnrmieqierva~rsr~p~ll~gptgagksflarriyelk~arhq~-----sg~fvevncatlrgd~amsalf 260 (531)
T COG4650 186 IATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQARHQF-----SGAFVEVNCATLRGDTAMSALF 260 (531)
T ss_pred ccccChHHHHHHHHHHHHHhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhc-----CCceEEEeeeeecCchHHHHHH
Confidence 44456667777766533 56678999999999999999999865322 222 5579999987763211
Q ss_pred -----cccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC-------------CeEEE
Q 002623 327 -----KYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCI 388 (899)
Q Consensus 327 -----~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------------~v~~I 388 (899)
.+.|..+.+ ..+..+.++++||+|||..|- .+-+.+|+..++.. ++.+|
T Consensus 261 ghvkgaftga~~~r-----~gllrsadggmlfldeigelg--------adeqamllkaieekrf~pfgsdr~v~sdfqli 327 (531)
T COG4650 261 GHVKGAFTGARESR-----EGLLRSADGGMLFLDEIGELG--------ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLI 327 (531)
T ss_pred hhhccccccchhhh-----hhhhccCCCceEehHhhhhcC--------ccHHHHHHHHHHhhccCCCCCccccccchHHh
Confidence 022322222 112234567899999999886 45566777777643 44566
Q ss_pred EecChhHHHhhhc---cCHHHHccCceEEecCCCHHHHHHHH
Q 002623 389 GATTLDEYRKYIE---KDPALERRFQQVYVDQPNVEDTISIL 427 (899)
Q Consensus 389 ~at~~~~~~~~~~---~d~al~~Rf~~i~~~~ps~ee~~~Il 427 (899)
+.|..+ .++... ....|..|+....|..|...++.+-+
T Consensus 328 agtvrd-lrq~vaeg~fredl~arinlwtf~lpgl~qr~edi 368 (531)
T COG4650 328 AGTVRD-LRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 (531)
T ss_pred hhhHHH-HHHHHhccchHHHHHHhhheeeeeccccccCcccc
Confidence 555443 222111 12334457777788888776655443
No 491
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.17 E-value=2.3e-05 Score=86.63 Aligned_cols=98 Identities=18% Similarity=0.414 Sum_probs=61.2
Q ss_pred eeEEeccCCCcHHHHHHHHHHH-hcCCCCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEEEeC
Q 002623 681 SFMFMGPTGVGKTELAKALASY-MFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDE 759 (899)
Q Consensus 681 ~lLl~Gp~GtGKT~lA~~la~~-l~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 759 (899)
|+++.||+|||||++|.+|+.. .+.++ .+ +.++ .++..... ...+.+ ..+.+|+|||
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~sG-~f--~T~a---------~Lf~~L~~--------~~lg~v--~~~DlLI~DE 268 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILISG-GT--ITVA---------KLFYNIST--------RQIGLV--GRWDVVAFDE 268 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHHcC-Cc--CcHH---------HHHHHHHH--------HHHhhh--ccCCEEEEEc
Confidence 5999999999999999999887 32222 11 1111 12111000 011112 2345999999
Q ss_pred CCccC----hHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCC
Q 002623 760 IEKAH----SDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVG 802 (899)
Q Consensus 760 id~l~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~ 802 (899)
+..++ .+.+..|...|++|.++.+. ..-..++-+++..|..
T Consensus 269 vgylp~~~~~~~v~imK~yMesg~fsRG~--~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 269 VATLKFAKPKELIGILKNYMESGSFTRGD--ETKSSDASFVFLGNVP 313 (449)
T ss_pred CCCCcCCchHHHHHHHHHHHHhCceeccc--eeeeeeeEEEEEcccC
Confidence 99854 44778889999999888744 2233566666766763
No 492
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.16 E-value=3.1e-06 Score=77.31 Aligned_cols=94 Identities=21% Similarity=0.509 Sum_probs=57.4
Q ss_pred eEEeccCCCcHHHHHHHHHHHhcCC-----CCceEEeccccchhhhhhhhhcCCCCCCcccccccchhHHHhhCCCeEEE
Q 002623 682 FMFMGPTGVGKTELAKALASYMFNT-----EEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVIL 756 (899)
Q Consensus 682 lLl~Gp~GtGKT~lA~~la~~l~~~-----~~~~~~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 756 (899)
++|+||||+|||++|+.|++.+... ...+...+... .+ +-||. + ..+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------~~------w~gY~-~-----------q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------KF------WDGYQ-G-----------QPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------ch------hhccC-C-----------CcEEE
Confidence 5799999999999999999888321 01111111100 00 11222 1 13899
Q ss_pred EeCCCccChH----HHHHHHHhhcCCeeecCC----CceeeeCCEEEEEecCC
Q 002623 757 FDEIEKAHSD----VFNVFLQILDDGRVTDSQ----GRTVSFTNTVIIMTSNV 801 (899)
Q Consensus 757 lDEid~l~~~----~~~~Ll~~le~g~~~~~~----g~~~~~~~~iiI~ttN~ 801 (899)
+||+...... ....|+++++...+.-.. .+...+.--+||+|||.
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 9999987754 678889998876554322 12233445678888884
No 493
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.16 E-value=2.3e-06 Score=93.77 Aligned_cols=187 Identities=16% Similarity=0.212 Sum_probs=108.4
Q ss_pred HHhHHHhhccceeccchHHHHHHHHHHHHH-----cCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEec
Q 002623 640 LLHLEEELHKRVVGQDPAVKSVAEAIQRSR-----AGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (899)
Q Consensus 640 l~~l~~~l~~~i~Gq~~~~~~l~~~l~~~~-----~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~ 714 (899)
...+...+-..|+|++++++.|.-.+.-.- .|++ -++-+ +++|.|.||+.|+.|-+.+.+...++- +..-.
T Consensus 333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMK-IRGdI-NicLmGDPGVAKSQLLkyi~rlapRgv--YTTGr 408 (721)
T KOG0482|consen 333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMK-IRGDI-NICLMGDPGVAKSQLLKYISRLAPRGV--YTTGR 408 (721)
T ss_pred HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCce-eecce-eEEecCCCchhHHHHHHHHHhcCcccc--eecCC
Confidence 344555666789999999998877663110 1111 12333 799999999999999999998773211 10000
Q ss_pred cccchhhhhhhhhcCCCCCCccc--ccccchhHHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCC-Cceeee-
Q 002623 715 MSEYMEKHAVSRLIGAPPGYVGY--EEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ-GRTVSF- 790 (899)
Q Consensus 715 ~~~~~~~~~~~~l~g~~~~~~g~--~~~~~l~~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~-g~~~~~- 790 (899)
.|.-..- .....-. .-+|. -+| +++--+.+||..|||+|||...-.-++..+||...+.... |.....
T Consensus 409 GSSGVGL--TAAVmkD--pvTgEM~LEG----GALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLN 480 (721)
T KOG0482|consen 409 GSSGVGL--TAAVMKD--PVTGEMVLEG----GALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLN 480 (721)
T ss_pred CCCcccc--chhhhcC--CCCCeeEecc----ceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchh
Confidence 0000000 0000000 01110 011 2334567889999999999999889999999987776655 544333
Q ss_pred CCEEEEEecCCChhhhhccCCCCCCCcchHHHHHHHHHHHHHhcCChHHHhccceE-EecCCCCHH
Q 002623 791 TNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEY-IVFQPLDRD 855 (899)
Q Consensus 791 ~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~-i~f~~l~~e 855 (899)
.++-|+++.|+-... ++..- ...+ .=.++++|++|||.. +....++.+
T Consensus 481 AR~sILaAANPayGR--------Ynprr---s~e~------NI~LPaALLSRFDll~Li~D~pdrd 529 (721)
T KOG0482|consen 481 ARTSILAAANPAYGR--------YNPRR---SPEQ------NINLPAALLSRFDLLWLIQDRPDRD 529 (721)
T ss_pred hhHHhhhhcCccccc--------cCccc---ChhH------hcCCcHHHHHhhhhhhhhccCCccc
Confidence 367778888883321 11110 1111 225889999999985 334445543
No 494
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.16 E-value=1.7e-05 Score=85.69 Aligned_cols=208 Identities=19% Similarity=0.228 Sum_probs=125.6
Q ss_pred cceeccchHHHHHHHHHHHHHcCCCCCCCCcceeEEeccCCCcHHHHHHHHHHHhcCCCCceEEeccccchhh-------
Q 002623 649 KRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEK------- 721 (899)
Q Consensus 649 ~~i~Gq~~~~~~l~~~l~~~~~~~~~~~~p~~~lLl~Gp~GtGKT~lA~~la~~l~~~~~~~~~i~~~~~~~~------- 721 (899)
+.++|.++.+.++.+.++.++.|.. +++.+ ++|.||+|+|||++++.|.+.+-. .++..+..+.+.+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~-~~krI--l~L~GPvg~GKSsl~~~Lk~~le~--y~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLE-ERKRI--LLLLGPVGGGKSSLAELLKRGLEE--YPIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccC-ccceE--EEEECCCCCCHHHHHHHHHHHhhe--EEEEEecCCccccChhhhCCH
Confidence 4799999999999999998888775 55555 999999999999999999988721 12222111111000
Q ss_pred --------------------hhhhhh----cCC----------------------CCCCcccccccchh-----------
Q 002623 722 --------------------HAVSRL----IGA----------------------PPGYVGYEEGGQLT----------- 744 (899)
Q Consensus 722 --------------------~~~~~l----~g~----------------------~~~~~g~~~~~~l~----------- 744 (899)
.....+ -|. .|+.....+...|+
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~~ 215 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAEY 215 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhhh
Confidence 000000 000 01110000001111
Q ss_pred -----------HHHhhCCCeEEEEeCCCccChHHHHHHHHhhcCCeeecCCCceeeeCCEEEEEecCCChhhhhccCCCC
Q 002623 745 -----------EVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDET 813 (899)
Q Consensus 745 -----------~~~~~~~~~vl~lDEid~l~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~ 813 (899)
+.+..+..|++=|=|+-+.+.+.+..||.+.++|.+....+...-.-+.+||+.||. ..+..+.
T Consensus 216 s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~~~~i~~D~liiAhsNe--~E~~~f~--- 290 (358)
T PF08298_consen 216 SESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVDEDFGMIPFDELIIAHSNE--EEYNKFK--- 290 (358)
T ss_pred ccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecCCcccccccceeEEecCCH--HHHHHHh---
Confidence 223333446666667788889999999999999977653222222357899999996 2222110
Q ss_pred CCCcchHHHHHHHHHHHHHhcCChHHHhccceEEecCCCC-HHHHHHHHHHHHHHHHhhcccCCCccCHHHHHHhhc
Q 002623 814 FPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLD-RDQISSIVRLQVSFSKVSWIYSPWHFNYEMLVKFCY 889 (899)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~R~d~~i~f~~l~-~e~i~~I~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 889 (899)
.....++|.+|| .+|.+|... ..+=.+|-++.+.+-. ....++.|..+..++.
T Consensus 291 ------------------~~~~~eAf~DRi-~~I~VPY~L~~s~E~kIY~k~~~~s~----l~~~h~aP~~L~~aA~ 344 (358)
T PF08298_consen 291 ------------------NNKNNEAFKDRI-EVIKVPYCLRVSEEVKIYEKLIGKSD----LRDAHIAPHTLEMAAR 344 (358)
T ss_pred ------------------ccccchhhhhhe-EEEeccccCCHHHHHHHHHHHhhhcc----ccccccCchHHHHHHH
Confidence 233457899999 888888865 4455677777775433 1235677777655544
No 495
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.16 E-value=3e-05 Score=89.16 Aligned_cols=170 Identities=16% Similarity=0.221 Sum_probs=104.2
Q ss_pred CCCcCchHHHHHHHHHhhc-----CCCCCcEEEcCCCCcHHHHHHHHHHHhhc----CCCccccCCCeEEEEEcccccc-
Q 002623 255 DPVIGRDDEIRRCIQILSR-----RTKNNPVLIGEPGVGKTAISEGLAQRIVQ----GDVPQALMNRKLISLDMGALIA- 324 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l~~-----~~~~~~LL~Gp~G~GKT~la~~la~~l~~----~~~p~~l~~~~~~~l~~~~l~~- 324 (899)
..+.+|+.+...+-..+.. .....+.+.|-||||||..++.+.+.|.. +.+| ...++++|.-.+..
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p----~f~yveINgm~l~~~ 471 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP----KFDYVEINGLRLASP 471 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC----CccEEEEcceeecCH
Confidence 3467889887777766532 22236789999999999999999998763 5565 45777877544421
Q ss_pred ------------cccccch-HHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHH-HHHHh-hhhcCCCeEEEE
Q 002623 325 ------------GAKYRGE-FEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDA-GNLLK-PMLGRGELRCIG 389 (899)
Q Consensus 325 ------------~~~~~g~-~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~-~~~L~-~~l~~~~v~~I~ 389 (899)
|.+..+. .-+.+..-|.--.....++||+|||+|.|.... +++ +|++. +.+.+.++.+|+
T Consensus 472 ~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----QDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----HHHHHHHhcCCcCCCCceEEEE
Confidence 1111110 111112222211123457899999999998543 333 23332 233466888888
Q ss_pred ecChhHHHhhhccCHHHHccC--ceEEecCCCHHHHHHHHHHHHHHH
Q 002623 390 ATTLDEYRKYIEKDPALERRF--QQVYVDQPNVEDTISILRGLRERY 434 (899)
Q Consensus 390 at~~~~~~~~~~~d~al~~Rf--~~i~~~~ps~ee~~~Il~~~~~~~ 434 (899)
..|.-+.-.. .+....-+|+ ..|.|.+++.+++.+|+..-+...
T Consensus 547 IaNTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 547 IANTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred ecccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 7765432111 1233444565 489999999999999998777653
No 496
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.15 E-value=3.7e-06 Score=91.46 Aligned_cols=101 Identities=22% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccccccc---ccchHHHHHHHHHHHHHhhCCCeE
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAK---YRGEFEDRLKAVLKEVTESEGQII 351 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~~~~---~~g~~~~~l~~l~~~~~~~~~~~I 351 (899)
...+++|+||+|||||+|+.++|+.+.. .|..+..+.++.++..-+ ..+ .+...++.+.. .-+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~-------~g~~v~~~~~~~l~~~lk~~~~~~----~~~~~l~~l~~---~dl 220 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK-------KGVSSTLLHFPEFIRELKNSISDG----SVKEKIDAVKE---APV 220 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH-------cCCCEEEEEHHHHHHHHHHHHhcC----cHHHHHHHhcC---CCE
Confidence 4568999999999999999999999964 266777777666532211 111 12334444433 339
Q ss_pred EEEccchhhccCCCCCchHHHHHHHhhhhc---CCCeEEEEecChh
Q 002623 352 LFIDEIHTVVGAGATNGAMDAGNLLKPMLG---RGELRCIGATTLD 394 (899)
Q Consensus 352 L~iDEi~~l~~~~~~~~~~~~~~~L~~~l~---~~~v~~I~at~~~ 394 (899)
|+|||+..-.... -....+|..+++ ..+...|.|||.+
T Consensus 221 LiIDDiG~e~~s~-----~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 221 LMLDDIGAEQMSS-----WVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred EEEecCCCccccH-----HHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 9999997543211 111133444443 1356677788865
No 497
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.14 E-value=2.5e-05 Score=82.38 Aligned_cols=165 Identities=20% Similarity=0.315 Sum_probs=99.6
Q ss_pred CCCcCchHHHHHHHHHhh----cCCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccc--------
Q 002623 255 DPVIGRDDEIRRCIQILS----RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGAL-------- 322 (899)
Q Consensus 255 ~~iiG~~~~i~~~~~~l~----~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l-------- 322 (899)
.+++|..++-+.+-+.++ .+..++++++||.|+|||.++........+. |-+++.+.+...
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~-------~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQEN-------GENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhc-------CCeEEEEEECccchhhHHHH
Confidence 456676554444444333 3566899999999999999887665553221 334444332221
Q ss_pred -----------cccccccchHHHHHHHHHHHHHhh----CCCeEEEEccchhhccCCCCCchHHHHHHHhhhh-cCCCeE
Q 002623 323 -----------IAGAKYRGEFEDRLKAVLKEVTES----EGQIILFIDEIHTVVGAGATNGAMDAGNLLKPML-GRGELR 386 (899)
Q Consensus 323 -----------~~~~~~~g~~~~~l~~l~~~~~~~----~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l-~~~~v~ 386 (899)
....+..|.+.+.+..++..++.. +.++|.++||+|.+.+... ..-+.|++--.- .+..+.
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r---QtllYnlfDisqs~r~Pic 173 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR---QTLLYNLFDISQSARAPIC 173 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh---hHHHHHHHHHHhhcCCCeE
Confidence 122334566666777777666542 3456777889998874321 122333332111 255888
Q ss_pred EEEecChhHHHhhhccCHHHHccCc--eEEecCC-CHHHHHHHHHHHH
Q 002623 387 CIGATTLDEYRKYIEKDPALERRFQ--QVYVDQP-NVEDTISILRGLR 431 (899)
Q Consensus 387 ~I~at~~~~~~~~~~~d~al~~Rf~--~i~~~~p-s~ee~~~Il~~~~ 431 (899)
+||.|+.-+.-.+ +...+++||. .|.+.++ +.++...+++.++
T Consensus 174 iig~Ttrld~lE~--LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 174 IIGVTTRLDILEL--LEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred EEEeeccccHHHH--HHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9998887655443 4588899996 4676666 6788777777665
No 498
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.10 E-value=2.3e-05 Score=85.29 Aligned_cols=173 Identities=13% Similarity=0.165 Sum_probs=91.6
Q ss_pred chHHHHHHHHHhhc--CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEccccc-------------c
Q 002623 260 RDDEIRRCIQILSR--RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALI-------------A 324 (899)
Q Consensus 260 ~~~~i~~~~~~l~~--~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~-------------~ 324 (899)
|+.+++++.+.|.. ....-+.|+|++|+|||+||..+++...... . --.++.++++.-. .
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~---~--f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN---R--FDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC---C--CTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc---c--ccccccccccccccccccccccccccc
Confidence 57889999999877 4556678999999999999999998743111 0 1124455533311 0
Q ss_pred cc--c--ccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhc--CCCeEEEEecChhHHHh
Q 002623 325 GA--K--YRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLG--RGELRCIGATTLDEYRK 398 (899)
Q Consensus 325 ~~--~--~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~ 398 (899)
.. . .....+.....+.+.+ . ..+++|+||+++... .... +...+. ..+..+|.||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L-~-~~~~LlVlDdv~~~~---------~~~~-l~~~~~~~~~~~kilvTTR~~~v-- 141 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELL-K-DKRCLLVLDDVWDEE---------DLEE-LREPLPSFSSGSKILVTTRDRSV-- 141 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHH-C-CTSEEEEEEEE-SHH---------HH--------HCHHSS-EEEEEESCGGG--
T ss_pred ccccccccccccccccccchhhh-c-cccceeeeeeecccc---------cccc-ccccccccccccccccccccccc--
Confidence 00 0 1122333333333333 2 348999999997653 1211 222221 225677777766532
Q ss_pred hhccCHHHHccCceEEecCCCHHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHhccc
Q 002623 399 YIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDR 456 (899)
Q Consensus 399 ~~~~d~al~~Rf~~i~~~~ps~ee~~~Il~~~~~~~~~~~~~~i~~~~l~~~~~ls~~ 456 (899)
-..+......+.+...+.++..+++......-.....-.. +.....+++.+.+
T Consensus 142 ----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~-~~~~~~i~~~c~g 194 (287)
T PF00931_consen 142 ----AGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDL-EDLAKEIVEKCGG 194 (287)
T ss_dssp ----GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTS-CTHHHHHHHHTTT
T ss_pred ----cccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 1222222457899999999999988877543210011112 3344566666643
No 499
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.09 E-value=3.7e-05 Score=87.82 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=95.5
Q ss_pred CcCchHHHHHHHHHhhc------------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCCCeEEEEEcccccc
Q 002623 257 VIGRDDEIRRCIQILSR------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIA 324 (899)
Q Consensus 257 iiG~~~~i~~~~~~l~~------------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~ 324 (899)
|.|.++..+.++-.|-. +..-|+||+|.||+|||-+.+++++.+.+|..- +|..--.+-+...+.
T Consensus 431 Iye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT---SGkGsSavGLTayVt 507 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT---SGKGSSAVGLTAYVT 507 (804)
T ss_pred hhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee---cCCccchhcceeeEE
Confidence 66677666666655511 222589999999999999999999988554321 111110111111111
Q ss_pred cccccchHHHHHHHHHHH--HHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC---------------CeEE
Q 002623 325 GAKYRGEFEDRLKAVLKE--VTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG---------------ELRC 387 (899)
Q Consensus 325 ~~~~~g~~~~~l~~l~~~--~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~---------------~v~~ 387 (899)
..++.. +++-+ +.-..+++|=.|||+|++. ....+.|.++|+.- +.-+
T Consensus 508 ---rd~dtk----qlVLesGALVLSD~GiCCIDEFDKM~--------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SV 572 (804)
T KOG0478|consen 508 ---KDPDTR----QLVLESGALVLSDNGICCIDEFDKMS--------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSV 572 (804)
T ss_pred ---ecCccc----eeeeecCcEEEcCCceEEchhhhhhh--------HHHHHHHHHHHHHhhhhHhhcceeeecccccee
Confidence 111111 11111 1112356788999999997 44567788888632 5568
Q ss_pred EEecChhHH--------HhhhccCHHHHccCce--EEecCCCHHHHHHHHHHHHHHHh
Q 002623 388 IGATTLDEY--------RKYIEKDPALERRFQQ--VYVDQPNVEDTISILRGLRERYE 435 (899)
Q Consensus 388 I~at~~~~~--------~~~~~~d~al~~Rf~~--i~~~~ps~ee~~~Il~~~~~~~~ 435 (899)
++++|+... -.-+.++|.|++||+. +.++.|+...=+.+..++..-|.
T Consensus 573 LAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~ 630 (804)
T KOG0478|consen 573 LAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYP 630 (804)
T ss_pred eeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcc
Confidence 888886432 1235688999999994 46677776644556666665543
No 500
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.07 E-value=2.4e-05 Score=91.97 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=97.8
Q ss_pred cHHHHHhcCCCCCCcCchHHHHHHHHHhhc------------CCCCCcEEEcCCCCcHHHHHHHHHHHhhcCCCccccCC
Q 002623 244 DLTAMASAGKLDPVIGRDDEIRRCIQILSR------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMN 311 (899)
Q Consensus 244 ~l~~~~~~~~l~~iiG~~~~i~~~~~~l~~------------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~~p~~l~~ 311 (899)
++.++....-...+.|.+..-+.++-+|-. ++--|+||+|.||||||.|-+.+++.+..+-. ...++
T Consensus 275 ~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vy-tsgkg 353 (682)
T COG1241 275 DIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVY-TSGKG 353 (682)
T ss_pred cHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEE-Ecccc
Confidence 444444444455688888744444444411 22258999999999999999999988733210 00011
Q ss_pred CeEEEEEcccccccccccchHHHHHHHHHHHHHhhCCCeEEEEccchhhccCCCCCchHHHHHHHhhhhcCC--------
Q 002623 312 RKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------- 383 (899)
Q Consensus 312 ~~~~~l~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~IL~iDEi~~l~~~~~~~~~~~~~~~L~~~l~~~-------- 383 (899)
..-. .+.+.....+..|+ ..+. ..+.-..+++|.+|||++.+. ......|..+|+..
T Consensus 354 ss~~--GLTAav~rd~~tge--~~Le---aGALVlAD~Gv~cIDEfdKm~--------~~dr~aihEaMEQQtIsIaKAG 418 (682)
T COG1241 354 SSAA--GLTAAVVRDKVTGE--WVLE---AGALVLADGGVCCIDEFDKMN--------EEDRVAIHEAMEQQTISIAKAG 418 (682)
T ss_pred cccc--CceeEEEEccCCCe--EEEe---CCEEEEecCCEEEEEeccCCC--------hHHHHHHHHHHHhcEeeecccc
Confidence 1000 01111100001111 0000 001112457899999999887 44556677888643
Q ss_pred -------CeEEEEecChhH--H------HhhhccCHHHHccCce--EEecCCCHHHHHHHHHHHHHH
Q 002623 384 -------ELRCIGATTLDE--Y------RKYIEKDPALERRFQQ--VYVDQPNVEDTISILRGLRER 433 (899)
Q Consensus 384 -------~v~~I~at~~~~--~------~~~~~~d~al~~Rf~~--i~~~~ps~ee~~~Il~~~~~~ 433 (899)
+.-+++|+|+.. | ..-+.++++|++||+. +....|+.+.=..+..+++..
T Consensus 419 I~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 419 ITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred eeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 334677777653 1 1235678999999994 455667776556666666665
Done!