Query 002623
Match_columns 899
No_of_seqs 421 out of 5117
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:07:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002623.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1342-1346//hhsearch_pdb/002623hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 1.0 1 1 850.1 75.3 798 78-893 1-800 (854)
2 3pxi_A Negative regulator of g 1.0 1 1 771.8 55.5 699 78-894 1-706 (758)
3 1r6b_X CLPA protein; AAA+, N-t 1.0 1 1 733.7 64.4 680 83-895 2-698 (758)
4 3pxg_A Negative regulator of g 1.0 1 1 513.3 39.9 463 78-626 1-468 (468)
5 3cf2_A TER ATPase, transitiona 1.0 1 1 351.7 16.9 441 252-892 201-695 (806)
6 1ypw_A Transitional endoplasmi 1.0 1 1 301.4 8.3 449 250-894 199-697 (806)
7 4fcw_A Chaperone protein CLPB; 1.0 1 1 235.4 25.2 255 635-893 3-259 (311)
8 3pxi_A Negative regulator of g 1.0 1 1 217.1 24.5 386 39-454 44-703 (758)
9 1r6b_X CLPA protein; AAA+, N-t 1.0 1 1 202.3 29.4 390 39-454 38-694 (758)
10 4akg_A Glutathione S-transfera 1.0 1 1 200.4 31.8 445 275-868 1266-1792(2695)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=1.00 E-value=1 Score=850.13 Aligned_cols=798 Identities=57% Similarity=0.910 Sum_probs=726.8
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98443119999999999999998299974899999999706885799999984999999999999986308877789887
Q 002623 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (899)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlall~~~~~~~~~~L~~~gvd~~~i~~~~~~~~~~~~~~~~~~~~ 157 (899)
|||++||++++++|..|+.+|++++|.+|+|||||+||+.++++.+..+|.++|+|.+.++..+...+++.|...+....
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~ 80 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVG 80 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTT
T ss_pred CCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 97254399999999999999998599973199999999728884799999985999999999999998307888888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 76896699999999999998099966877999886306841456777508873568989998723655457999851378
Q 002623 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQRFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQDPEGKYEA 237 (899)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~~~~~~ll~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 237 (899)
+++|+.++++|+.|+.+|..+|++||+++|||+||+++++.+ ++...++..+....++..+....++..++.
T Consensus 81 ~~~S~~~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (854)
T 1qvr_A 81 QYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEATPGL--------PGLEALKGALKELRGGRTVQTEHAESTYNA 152 (854)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHSTTS--------CCHHHHHHHHTSSCSCCSSCSSCCCCCCSH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCC--------CCHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 787879999999999999984995761999999998412444--------789999999987425655554344433045
Q ss_pred HHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 87310229988865999997675499999999960079998488869999299999999999645998644589729999
Q 002623 238 LEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISL 317 (899)
Q Consensus 238 l~~~~~~l~~~~~~~~l~~ivg~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~l~~~~~~~i 317 (899)
|.+|+.+|++++++++|++++|++++++++++.+.++.++|++|+||||||||++|+.+++.+..+++|..+.+.+++.+
T Consensus 153 l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 153 LEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEE
T ss_conf 99997867877751997556786999999999983589982289859998999999999999760798433159869996
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 76310113554540799999999999860898499982510100289888437899988421318986999821716888
Q 002623 318 DMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYR 397 (899)
Q Consensus 318 ~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~~~~~~ 397 (899)
+++.+..|.++.|+++.+++.++..+....+++||||||+|.+.+.+...+..++.+.|+++++++.+++|++||.+++.
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYR 312 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHH
T ss_pred EHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 05775336764328999999999999966998599996678772367865319999999999827984999956826776
Q ss_pred HHHCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 64105988873675088338998989999999999995440998899999999970001248998925699999999986
Q 002623 398 KYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAK 477 (899)
Q Consensus 398 ~~~~~~~~l~~Rf~~i~i~~p~~ee~~~Il~~~~~~~~~~~~v~i~~~al~~~~~ls~~~~~~~~~p~~a~~lld~a~~~ 477 (899)
+ +.++++|.+||+.|.|++|+.+++..|++.++..+..++++.++++++..++.++.+|+.++++|+++++++|+++++
T Consensus 313 ~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 313 E-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp H-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHH
T ss_pred H-HCCCHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 5-036888982771577189799999999986466665426888888999999998752224455849999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23510699115999999999999999750137433239999999999999999999999999999999999999999999
Q 002623 478 LKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEID 557 (899)
Q Consensus 478 ~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~~~ 557 (899)
+++.....|..++.+++.+..++.+...+.++.+..+.+++..+++++..+++++..+..+|+.++..++..+.++++++
T Consensus 392 ~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (854)
T 1qvr_A 392 LRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 471 (854)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87613679656999999999999999999844032349999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 97599999998330888898610468999999999999999976218653345677433999999881699531013478
Q 002623 558 RVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKLQQSER 637 (899)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~i~~~~g~p~~~~~~~~~ 637 (899)
.+...++..++.+++.++.++.|+.+..++.++...... ....+++..+++.+++..+++.++++|+..+...+.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~ 546 (854)
T 1qvr_A 472 EVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK-----LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGER 546 (854)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-----SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCHHHH
T ss_conf 876558887752267778887652468899999998753-----112444557769999999999885988475367799
Q ss_pred HHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 99885998513630045258999999999987489999997413697526888089999999998428998469963534
Q 002623 638 EKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSE 717 (899)
Q Consensus 638 ~~l~~l~~~l~~~i~gq~~a~~~l~~~i~~~~~~~~~~~~p~~~ill~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~~~~ 717 (899)
..+..++..++..++||+.+++.+...+...+.|..++++|.++++|+||||||||++|+++++.+++.+.+++.++|++
T Consensus 547 ~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 547 EKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp HHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECHH
T ss_conf 99987998874116783889999999999996266778888507998799998799999999998448888579972121
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEE
Q ss_conf 20122244221899987544455311489860998499994897469579999999510790541899555507889999
Q 002623 718 YMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIM 797 (899)
Q Consensus 718 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~Vi~iDEid~l~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ 797 (899)
+...+..+.++|.+++|+|+..++.+++.++..+++||||||||++++++++.|+++|++|.+++..|+.+++.+++||+
T Consensus 627 ~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 627 YMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp CCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCEECCCCEEEEE
T ss_conf 03234788872899988673656559999983899089992510069999999999861580477998774257769999
Q ss_pred ECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 238782443203778898813189999999999970098678811260776699999899999999999888440347--
Q 002623 798 TSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIYS-- 875 (899)
Q Consensus 798 ttN~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~p~ll~R~d~~i~f~~ls~~~i~~I~~~~l~~~~~~~~~~-- 875 (899)
|||.++..+.+.. ++.. ....+.+.+.+.+...|+|+|++||+.++.|.||+.+++..|++.++.++..++...
T Consensus 707 tsn~~~~~~~~~~-~~~~---~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~ 782 (854)
T 1qvr_A 707 TSNLGSPLILEGL-QKGW---PYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRI 782 (854)
T ss_dssp ECCTTHHHHHHHH-HTTC---CHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ECCCCHHHHHHHC-CCCC---CHHHHHHHHHHHHHHHCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5686768786521-3564---06999999999998608999997458377489979999999999999999999985796
Q ss_pred CCCCCHHHHHHHHCCCCC
Q ss_conf 876699999984011222
Q 002623 876 PWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 876 ~~~~~~~~l~~~~~~~~~ 893 (899)
...++.+++..++.+.|.
T Consensus 783 ~~~~~~~a~~~L~~~~~~ 800 (854)
T 1qvr_A 783 SLELTEAAKDFLAERGYD 800 (854)
T ss_dssp EEEECHHHHHHHHHHHCB
T ss_pred EEEECHHHHHHHHHCCCC
T ss_conf 598889999999980989
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=771.76 Aligned_cols=699 Identities=47% Similarity=0.776 Sum_probs=605.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98443119999999999999998299974899999999706885799999984999999999999986308877789887
Q 002623 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (899)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlall~~~~~~~~~~L~~~gvd~~~i~~~~~~~~~~~~~~~~~~~~ 157 (899)
|||++||++++++|..|+++|++++|++|+|||||+|||.++++.+.++|.++|+|++.++..+...+++.|... ..
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~---~~ 77 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMS---QT 77 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTC---SS
T ss_pred CCHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC---CC
T ss_conf 954656899999999999999983989424999999987445757999999839999999999998735477777---88
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC----CCC
Q ss_conf 768966999999999999980999668779998863068-414567775088735689899987236554579----998
Q 002623 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQSVIDQ----DPE 232 (899)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~-~~~~~ll~~~gi~~~~l~~~i~~~~~~~~~~~~----~~~ 232 (899)
++||+.++++|+.|+.+|..+|++||+++|||+||++++ +.+.++|..+|++.+.++..+....+....... .+.
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 157 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSN 157 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----CCS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 88798999999999999998599942699999999725776788999883999999999999984677666555556651
Q ss_pred CCHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 51378873102299888659999976754999999999600799984888699992999999999996459986445897
Q 002623 233 GKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR 312 (899)
Q Consensus 233 ~~~~~l~~~~~~l~~~~~~~~l~~ivg~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~l~~~ 312 (899)
..++.|.+|+.+|+++++++.+++++|++++++++++.+.++.++|+||+||||||||++|+++|+.+.++++|..+.+.
T Consensus 158 ~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~ 237 (758)
T 3pxi_A 158 ANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (758)
T ss_dssp THHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 02668999999999988618988764866999999999847788975898999989999999999997527897232488
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 29999763101135545407999999999998608984999825101002898884378999884213189869998217
Q 002623 313 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATT 392 (899)
Q Consensus 313 ~~~~i~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~ 392 (899)
+++.+++ +.+|.|+++.+++.++..+.. .+++||||| +..++++.|++.++++.+++|++||
T Consensus 238 ~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~-~~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~at~ 299 (758)
T 3pxi_A 238 RVMTLDM-----GTKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (758)
T ss_dssp CEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred EEEEECC-----CCCCCCHHHHHHHHHHHHHHH-CCCEEEEEC------------CCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 6999516-----644354589999999999985-599799986------------8665999889998659879996788
Q ss_pred HHHHHHHHCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 16888641059888736750883389989899999999999954409988999999999700012489989256999999
Q 002623 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 393 ~~~~~~~~~~~~~l~~Rf~~i~i~~p~~ee~~~Il~~~~~~~~~~~~v~i~~~al~~~~~ls~~~~~~~~~p~~a~~lld 472 (899)
..+|.+++.+++++++||+.|.|+.|+.+++..|++.+...++.++++.+++.++..++.++.+|+.++++|++++++++
T Consensus 300 ~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~ 379 (758)
T 3pxi_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (758)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 38888876245999962847883899999999999999999998629987879999999975400566769717999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986235106991159999999999999997501374332399999999999999999999999999999999999999
Q 002623 473 EAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSI 552 (899)
Q Consensus 473 ~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~ 552 (899)
.+++++++.....|..++.+++.+..++.+...+..+.+ .++...++.++..++.++..+...|..+.
T Consensus 380 ~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~l~~~~~~~~~~~--------- 447 (758)
T 3pxi_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRLREQVEDTKKSWKEKQ--------- 447 (758)
T ss_dssp HHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHSGGGHHH---------
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 998999862247995046689999999999999884747---99999999999999999999999998754---------
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999975999999983308888986104689999999999999999762186533456774339999998816995310
Q 002623 553 KEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIPVSKL 632 (899)
Q Consensus 553 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~i~~~~g~p~~~~ 632 (899)
......++.+++..++..++++|+..+
T Consensus 448 -----------------------------------------------------~~~~~~v~~~~i~~~v~~~~~ip~~~~ 474 (758)
T 3pxi_A 448 -----------------------------------------------------GQENSEVTVDDIAMVVSSWTGVPVSKI 474 (758)
T ss_dssp -----------------------------------------------------HCC---CCTHHHHHHHHTTC-------
T ss_pred -----------------------------------------------------CCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf -----------------------------------------------------136761179999999998858985876
Q ss_pred HHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 13478998859985136300452589999999999874899999974136975268880899999999984289984699
Q 002623 633 QQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVR 712 (899)
Q Consensus 633 ~~~~~~~l~~l~~~l~~~i~gq~~a~~~l~~~i~~~~~~~~~~~~p~~~ill~Gp~GtGKT~lA~~la~~l~~~~~~~i~ 712 (899)
...+...+..+...+...++||+.+++.+...+...+.+..++.+|.+++||+||||||||++|+++++.+++.+.++++
T Consensus 475 ~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~ 554 (758)
T 3pxi_A 475 AQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIR 554 (758)
T ss_dssp CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 17799999999999838681739999999999999970467889983499998899987999999999985599766699
Q ss_pred ECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCEEEECC
Q ss_conf 63534201222442218999875444553114898609984999948974695799999995107905418995555078
Q 002623 713 IDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTN 792 (899)
Q Consensus 713 i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~Vi~iDEid~l~~~~~~~Ll~~le~g~~~d~~g~~~~~~~ 792 (899)
++|+++.+.+..+ ++.+++.++..+++||||||||++++++++.|+++|++|.+++..|+.+++.+
T Consensus 555 i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 620 (758)
T 3pxi_A 555 IDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRN 620 (758)
T ss_dssp EEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTT
T ss_pred EECHHCCCCCCCC--------------CCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCEECCCC
T ss_conf 7120026643445--------------64145999949983999957100599999999998546768758997843677
Q ss_pred EEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999238782443203778898813189999999999970098678811260776699999899999999999888440
Q 002623 793 TVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSW 872 (899)
Q Consensus 793 ~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~p~ll~R~d~~i~f~~ls~~~i~~I~~~~l~~~~~~~ 872 (899)
++||+|||.+... .+.+...+...|+|+|++||+.+|.|+||+.+++..|++.++.++..++
T Consensus 621 ~~iI~ttn~~~~~------------------~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 682 (758)
T 3pxi_A 621 TILIMTSNVGASE------------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRL 682 (758)
T ss_dssp CEEEEEESSSTTC------------------CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHH------------------HHHHHHHHHHHCCHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6999937887133------------------7999999996289999944785996599799999999999999999999
Q ss_pred CC--CCCCCCHHHHHHHHCCCCCC
Q ss_conf 34--78766999999840112221
Q 002623 873 IY--SPWHFNYEMLVKFCYLAFTI 894 (899)
Q Consensus 873 ~~--~~~~~~~~~l~~~~~~~~~~ 894 (899)
.. ....++.+++..++...|.|
T Consensus 683 ~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 683 KEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp HTTTCEEEECHHHHHHHHGGGCCT
T ss_pred HHCCCEEEECHHHHHHHHHHCCCC
T ss_conf 967995997999999999828997
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=1.00 E-value=1 Score=733.71 Aligned_cols=680 Identities=40% Similarity=0.656 Sum_probs=599.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCCC--CCCCC
Q ss_conf 11999999999999999829997489999999970688579999998499999999999998630-8877789--88776
Q 002623 83 FTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQR-QPKVLGE--TAGSM 159 (899)
Q Consensus 83 ~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlall~~~~~~~~~~L~~~gvd~~~i~~~~~~~~~~-~~~~~~~--~~~~~ 159 (899)
||++++++|..|+.+|++++|.+|+|||||+||+.+ +.+..+|.++|+|.+.++..+...+++ .|...+. ...++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~--~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSN--PSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTS--HHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC--CHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 897999999999999998599974099999999759--479999998499989999999999833488777766667778
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCC------C--C--CC
Q ss_conf 8966999999999999980999668779998863068-4145677750887356898999872365------5--4--57
Q 002623 160 LGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQ------S--V--ID 228 (899)
Q Consensus 160 ~s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~-~~~~~ll~~~gi~~~~l~~~i~~~~~~~------~--~--~~ 228 (899)
+|+.++++|+.|+.+|..+|++||+++|||+||++++ +.+.++|..+|++.+.+.+.+....... . . ..
T Consensus 80 ~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (758)
T 1r6b_X 80 PTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNS 159 (758)
T ss_dssp ECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC------------------
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 59899999999999999839977608999999861664257888887199889999999873211234335565544455
Q ss_pred CCCCCCHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99985137887310229988865999997675499999999960079998488869999299999999999645998644
Q 002623 229 QDPEGKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQA 308 (899)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~~~~~~~~l~~ivg~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~ 308 (899)
..++..++.|.+|+.+|+++++++.|++++|++++++++++.+.+..++|+||+||||||||++|+++++.+.++.+|..
T Consensus 160 ~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~ 239 (758)
T 1r6b_X 160 EEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_dssp ---------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 56654313799986757999854999876687999999999985467888079849999899999999999973799845
Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCC-CHHHHHHHHHHHHCCCCEEE
Q ss_conf 58972999976310113554540799999999999860898499982510100289888-43789998842131898699
Q 002623 309 LMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN-GAMDAGNLLKPMLGRGELRC 387 (899)
Q Consensus 309 l~~~~~~~i~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~ILfiDEi~~l~~~~~~~-~~~~~~~~L~~~l~~g~i~i 387 (899)
+.+..++.++++.+..+.++.|+++.+++.++..+... .++||||||+|.+.+.+... +..++.+.|+++++++.+++
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 318 (758)
T 1r6b_X 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRV 318 (758)
T ss_dssp GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEE
T ss_pred HCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 43887999757887436554526999999999999966-98499995668885167877660889999999985798699
Q ss_pred EEECCHHHHHHHHCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 98217168886410598887367508833899898999999999999544099889999999997000124899892569
Q 002623 388 IGATTLDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKA 467 (899)
Q Consensus 388 I~at~~~~~~~~~~~~~~l~~Rf~~i~i~~p~~ee~~~Il~~~~~~~~~~~~v~i~~~al~~~~~ls~~~~~~~~~p~~a 467 (899)
|++||.+++.+++.++++|.+||+.+.|++|+.+++..|++.+...++.++++.++++++..++.++.+|+.++++|+++
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEECCHHHHHHHHCCHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99847467755554298988476688827989899999999999999873389879999999999865532154585078
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999862351069911599999999999999975013743323999999999999999999999999999999999
Q 002623 468 IDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMT 547 (899)
Q Consensus 468 ~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~ 547 (899)
+++++.+++..++...
T Consensus 399 i~lld~a~~~~~~~~~---------------------------------------------------------------- 414 (758)
T 1r6b_X 399 IDVIDEAGARARLMPV---------------------------------------------------------------- 414 (758)
T ss_dssp HHHHHHHHHHHHHSSS----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCC----------------------------------------------------------------
T ss_conf 8999999999742631----------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99999999999759999999833088889861046899999999999999997621865334567743399999988169
Q 002623 548 RIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGI 627 (899)
Q Consensus 548 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~i~~~~g~ 627 (899)
......|+.+++..++..++++
T Consensus 415 ----------------------------------------------------------~~~~~~v~~~di~~~~~~~~~i 436 (758)
T 1r6b_X 415 ----------------------------------------------------------SKRKKTVNVADIESVVARIARI 436 (758)
T ss_dssp ----------------------------------------------------------CCCCCSCCHHHHHHHHHHHSCC
T ss_pred ----------------------------------------------------------CCCCCCCCHHHHHHHHHHHCCC
T ss_conf ----------------------------------------------------------1368854899999999875089
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 95310134789988599851363004525899999999998748999999741369752688808999999999842899
Q 002623 628 PVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTE 707 (899)
Q Consensus 628 p~~~~~~~~~~~l~~l~~~l~~~i~gq~~a~~~l~~~i~~~~~~~~~~~~p~~~ill~Gp~GtGKT~lA~~la~~l~~~~ 707 (899)
|+..+...+...+..+...+...++||+.++..+..++...+.|..++++|.+++||+||||||||++|+++++.+ +
T Consensus 437 p~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~ 513 (758)
T 1r6b_X 437 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G 513 (758)
T ss_dssp CCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH---C
T ss_conf 9644556589999999999986506789999999999999964467788876589987899976999999999984---5
Q ss_pred CCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCE
Q ss_conf 84699635342012224422189998754445531148986099849999489746957999999951079054189955
Q 002623 708 EALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRT 787 (899)
Q Consensus 708 ~~~i~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~Vi~iDEid~l~~~~~~~Ll~~le~g~~~d~~g~~ 787 (899)
.++++++|+++.+.+.++.++|.++||+|+.+++.+++.++.++++||||||||++++++++.|+++||+|.+++..|+.
T Consensus 514 ~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 514 IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEE
T ss_pred CCEEEEECHHHCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCE
T ss_conf 77799861452104457664389987767565524899999579948999082103989999999986475798289977
Q ss_pred EEECCEEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 55078899992387824432037788988131899999999999700986788112607766999998999999999998
Q 002623 788 VSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSF 867 (899)
Q Consensus 788 ~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~p~ll~R~d~~i~f~~ls~~~i~~I~~~~l~~ 867 (899)
+++.+++||+|||.+...+.+...|+... .....+...+...|+|+|++||+.+|.|+||+.+++..|+..++.+
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQ-----DNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp EECTTEEEEEEECSSCC----------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EECCCEEEEEECCCCHHHHHHCCCCCCCC-----CHHHHHHHHHHHHCCHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 72587389982475524443224676541-----0678899999875599999637840464799999999999999999
Q ss_pred HHHHCCCC--CCCCCHHHHHHHHCCCCCCC
Q ss_conf 88440347--87669999998401122211
Q 002623 868 SKVSWIYS--PWHFNYEMLVKFCYLAFTIR 895 (899)
Q Consensus 868 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 895 (899)
+..++... ...++.+++..+....|..+
T Consensus 669 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 698 (758)
T 1r6b_X 669 LQVQLDQKGVSLEVSQEARNWLAEKGYDRA 698 (758)
T ss_dssp HHHHHHHTTEEEEECHHHHHHHHHHHCBTT
T ss_pred HHHHHHHCCCEEEECHHHHHHHHHHCCCCC
T ss_conf 999999789389968999999998088967
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=513.29 Aligned_cols=463 Identities=43% Similarity=0.716 Sum_probs=406.2
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98443119999999999999998299974899999999706885799999984999999999999986308877789887
Q 002623 78 ITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQKNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLGETAG 157 (899)
Q Consensus 78 ~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlall~~~~~~~~~~L~~~gvd~~~i~~~~~~~~~~~~~~~~~~~~ 157 (899)
|||++||+.++++|..|+.+|++++|++|+|||||+|||.++++.+..+|.++|+|++.++..+...+++.|... ..
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~~---~~ 77 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEMS---QT 77 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTTC---SS
T ss_pred CCCHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC---CC
T ss_conf 960434899999999999999983999535999999997445858999999849999999999998845367777---88
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC----CCCCC
Q ss_conf 768966999999999999980999668779998863068-4145677750887356898999872365545----79998
Q 002623 158 SMLGRDLEALIQRSREYKKEYGDSFVSVEHLVLGFTQDQ-RFGKQLFRDFQISLPTLKSAIEAIRGRQSVI----DQDPE 232 (899)
Q Consensus 158 ~~~s~~~~~~l~~A~~~a~~~g~~~I~~ehlllall~~~-~~~~~ll~~~gi~~~~l~~~i~~~~~~~~~~----~~~~~ 232 (899)
++||+.++++|+.|+.+|..+|++||+++|||+||++++ +.+.++|..+|++.+.++..+....+..... ...+.
T Consensus 78 ~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 157 (468)
T 3pxg_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSN 157 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----CCS
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 88898999999999999998599816499999998716655699999884999999999999984567544455676776
Q ss_pred CCHHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 51378873102299888659999976754999999999600799984888699992999999999996459986445897
Q 002623 233 GKYEALEKYGKDLTAMASAGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNR 312 (899)
Q Consensus 233 ~~~~~l~~~~~~l~~~~~~~~l~~ivg~~~~i~~~~~~l~~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~l~~~ 312 (899)
...+.|.+|+.+|++++++++++++||++++++++++.+.++.++|+||+||||||||++|+++++.+.++++|..+.+.
T Consensus 158 ~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~ 237 (468)
T 3pxg_A 158 ANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK 237 (468)
T ss_dssp THHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 67557999999899898649988766849999999999825677873787899988999999999998717997665498
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 29999763101135545407999999999998608984999825101002898884378999884213189869998217
Q 002623 313 KLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATT 392 (899)
Q Consensus 313 ~~~~i~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g~i~iI~at~ 392 (899)
+++.++++ .+|.|+++.+++.++..+.. .+++||||| +..++++.|++.++++.+++|++||
T Consensus 238 ~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~-~~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~at~ 299 (468)
T 3pxg_A 238 RVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIGATT 299 (468)
T ss_dssp CEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEEECC
T ss_pred EEEEEECC-----CCCCCHHHHHHHHHHHHHHH-CCCEEEEEE------------CCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 48996177-----66562689999999999995-699699981------------8615999987765079879996188
Q ss_pred HHHHHHHHCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 16888641059888736750883389989899999999999954409988999999999700012489989256999999
Q 002623 393 LDEYRKYIEKDPALERRFQQVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVD 472 (899)
Q Consensus 393 ~~~~~~~~~~~~~l~~Rf~~i~i~~p~~ee~~~Il~~~~~~~~~~~~v~i~~~al~~~~~ls~~~~~~~~~p~~a~~lld 472 (899)
.++|++++.++++|.+||+.|.|++|+.+++..|++.++..++.++++.++++++..++.++.+|+.++++|+++++++|
T Consensus 300 ~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 300 LDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (468)
T ss_dssp TTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 79998876247999975754653898999999999999999998549997999999999998877526769837999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986235106991159999999999999997501374332399999999999999999999999999999999999999
Q 002623 473 EAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSI 552 (899)
Q Consensus 473 ~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~ 552 (899)
.+++++++.....|..+..++..+..++.+........ .-++...++.+...++++++.+...|..+..
T Consensus 380 ~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~---d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 448 (468)
T 3pxg_A 380 EAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ---EFEKAASLRDTEQRLREQVEDTKKSWKEKQG-------- 448 (468)
T ss_dssp HHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHC---CSHHHHHHHHHHHHHHHHHHHHHSGGGHHHH--------
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf 99999974067991679999999999999999987186---7999999999999999999999999986145--------
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999975999999983308888986104689999999999999999762186533456774339999998816
Q 002623 553 KEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTG 626 (899)
Q Consensus 553 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~i~~~~g 626 (899)
.....|+.++|+.+++.|+|
T Consensus 449 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 468 (468)
T 3pxg_A 449 ------------------------------------------------------QENSEVTVDDIAMVVSSWTG 468 (468)
T ss_dssp ------------------------------------------------------HHTTCCCTHHHHHHHHTTC-
T ss_pred ------------------------------------------------------CCCCCCCHHHHHHHHHHHHC
T ss_conf ------------------------------------------------------78882089999999998739
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=351.67 Aligned_cols=441 Identities=22% Similarity=0.297 Sum_probs=300.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH----H---------CCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
Q ss_conf 99999767549999999996----0---------0799984888699992999999999996459986445897299997
Q 002623 252 GKLDPVIGRDDEIRRCIQIL----S---------RRTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLD 318 (899)
Q Consensus 252 ~~l~~ivg~~~~i~~~~~~l----~---------~~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~l~~~~~~~i~ 318 (899)
..|+++.|.++.++.+.+.+ . ...++++||+||||||||++|+++|..+ +.+++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCEEEEEE
T ss_conf 99035149999999999999987519898863589999758977989998899999999971----------98399997
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCC---CHHHHHHHHHHHH----CCCCEEEEEEC
Q ss_conf 6310113554540799999999999860898499982510100289888---4378999884213----18986999821
Q 002623 319 MGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATN---GAMDAGNLLKPML----GRGELRCIGAT 391 (899)
Q Consensus 319 ~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~ILfiDEi~~l~~~~~~~---~~~~~~~~L~~~l----~~g~i~iI~at 391 (899)
++++.+ +|.|+.+..++.+|..+.. ..|+||||||+|.+.+.++.. ....+.+.|+..+ +++.+.+|++|
T Consensus 271 ~~~l~s--k~~gese~~lr~lF~~A~~-~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 271 GPEIMS--KLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HHHHHS--SCTTHHHHHHHHHHHHHTT-SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHHHH-CCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 379543--3316789999999999997-2992999851002334457788739999999999997466666987999966
Q ss_pred CHHHHHHHHCCCHHHHC--CCC-EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 71688864105988873--675-088338998989999999999995440998899999999970001248998925699
Q 002623 392 TLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAI 468 (899)
Q Consensus 392 ~~~~~~~~~~~~~~l~~--Rf~-~i~i~~p~~ee~~~Il~~~~~~~~~~~~v~i~~~al~~~~~ls~~~~~~~~~p~~a~ 468 (899)
|..+ .+|++|+| ||+ .|+++.|+.+++.+||+.++..+... ++..+..++..+.+| .+....
T Consensus 348 N~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-----~dvdl~~lA~~T~Gf-----sgaDL~ 412 (806)
T 3cf2_A 348 NRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGH-----VGADLA 412 (806)
T ss_dssp SSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-----TTCCHHHHHHHCCSC-----CHHHHH
T ss_pred CCHH-----HCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-----CCCCHHHHHHHCCCC-----CHHHHH
T ss_conf 9803-----2698885786361688668979899999999985689988-----643899999756899-----899999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998623510699115999999999999999750137433239999999999999999999999999999999999
Q 002623 469 DLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTR 548 (899)
Q Consensus 469 ~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~ 548 (899)
.++.+|+..+..+. ............
T Consensus 413 ~Lv~eA~~~A~~r~--------------------~~~i~~~~~~~~---------------------------------- 438 (806)
T 3cf2_A 413 ALCSEAALQAIRKK--------------------MDLIDLEDETID---------------------------------- 438 (806)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHGGGTCCCCS----------------------------------
T ss_pred HHHHHHHHHHHHHC--------------------CCCCCCCCCCCC----------------------------------
T ss_conf 99999999999841--------------------451200013320----------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999997599999998330888898610468999999999999999976218653345677433999999881699
Q 002623 549 IQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTGIP 628 (899)
Q Consensus 549 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~i~~~~g~p 628 (899)
.+ ......++.+|+...+.......
T Consensus 439 -----------------------------------~e--------------------~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 439 -----------------------------------AE--------------------VMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp -----------------------------------HH--------------------HHHHCEECTTHHHHHHSSSSCCC
T ss_pred -----------------------------------HH--------------------HHCCCEEEHHHHHHHHHHCCCCC
T ss_conf -----------------------------------45--------------------52255651999999997287831
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHH--------CCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 53101347899885998513630045258999999999987--------4899999974136975268880899999999
Q 002623 629 VSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSR--------AGLSDPHRPIASFMFMGPTGVGKTELAKALA 700 (899)
Q Consensus 629 ~~~~~~~~~~~l~~l~~~l~~~i~gq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~ill~Gp~GtGKT~lA~~la 700 (899)
.... ........|..+.|.+++++.+.+.+.... .+.. .|. .+||+||||||||.+|+++|
T Consensus 464 ~r~~-------~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~---~~~-gvLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 464 LRET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT---PSK-GVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp CCCC-------CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCC---CCS-CCEEESSTTSSHHHHHHHHH
T ss_pred CCCC-------CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCC---CCC-EEEEECCCCCCCHHHHHHHH
T ss_conf 1234-------445788788881788999999999997566689999714888---886-07986687789639999999
Q ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCH--------------H
Q ss_conf 98428998469963534201222442218999875444553114898609984999948974695--------------7
Q 002623 701 SYMFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHS--------------D 766 (899)
Q Consensus 701 ~~l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~Vi~iDEid~l~~--------------~ 766 (899)
..+ +.+|+.++.+++.. .++|..... ...+|...++..+|||||||||.+.+ .
T Consensus 533 ~e~---~~~f~~v~~~~l~s-----~~vGese~~-----vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~r 599 (806)
T 3cf2_A 533 NEC---QANFISIKGPELLT-----MWFGESEAN-----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp HTT---TCEEEECCHHHHHT-----TTCSSCHHH-----HHHHHHHHHTTCSEEEECSCGGGCC--------------CH
T ss_pred HHH---CCCEEEECCCHHHC-----CCCCHHHHH-----HHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 983---89668742411210-----334368999-----99999999972996352042567763158888898669999
Q ss_pred HHHHHHHHHCCCEEECCCCCEEEECCEEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH--CCC
Q ss_conf 999999951079054189955550788999923878244320377889881318999999999997009867881--126
Q 002623 767 VFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVD 844 (899)
Q Consensus 767 ~~~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~p~ll~--R~d 844 (899)
+.+.||..||.-. ...++++|++||. ...++|++++ |||
T Consensus 600 v~~~lL~~mdg~~---------~~~~V~vi~aTN~------------------------------p~~lD~AllRpgRfd 640 (806)
T 3cf2_A 600 VINQILTEMDGMS---------TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLD 640 (806)
T ss_dssp HHHHHHHHHHSSC---------SSSSEEEECC-CC------------------------------SSSSCHHHHSTTTSC
T ss_pred HHHHHHHHHHCCC---------CCCCEEEEEECCC------------------------------CHHCCHHHCCCCCCE
T ss_conf 9999999974878---------7799899993798------------------------------043898471778550
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHH-------HCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 07766999998999999999998884-------4034787669999998401122
Q 002623 845 EYIVFQPLDRDQISSIVRLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAF 892 (899)
Q Consensus 845 ~~i~f~~ls~~~i~~I~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~ 892 (899)
.+|.|+.++.++..+|++.++++... .+.....+||...+..+|..|.
T Consensus 641 ~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp CEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7999799699999999999856799987789999997689999999999999999
No 6
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=301.42 Aligned_cols=449 Identities=22% Similarity=0.304 Sum_probs=290.4
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHC-------------CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEE
Q ss_conf 659999976754999999999600-------------7999848886999929999999999964599864458972999
Q 002623 250 SAGKLDPVIGRDDEIRRCIQILSR-------------RTKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLIS 316 (899)
Q Consensus 250 ~~~~l~~ivg~~~~i~~~~~~l~~-------------~~~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~l~~~~~~~ 316 (899)
....|++++|.++.++++.+.+.. ....++||+||||||||++|++++..+ +..++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~ 268 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFL 268 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC----------CCCEEE
T ss_conf 7899888288099999999999987429899986388999738998939998799999999971----------996899
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCC---HHHHHHHHHHHHC----CCCEEEEE
Q ss_conf 9763101135545407999999999998608984999825101002898884---3789998842131----89869998
Q 002623 317 LDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNG---AMDAGNLLKPMLG----RGELRCIG 389 (899)
Q Consensus 317 i~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~ILfiDEi~~l~~~~~~~~---~~~~~~~L~~~l~----~g~i~iI~ 389 (899)
+++..+.. .+.|+.+..+..+|..+... .++++|+||++.+.+..+... ...+.+.|..+++ +..+.+|+
T Consensus 269 v~~~~l~~--~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~ 345 (806)
T 1ypw_A 269 INGPEIMS--KLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp EEHHHHSS--SSTTHHHHHHHHHHHHHHHH-CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEE
T ss_pred EECHHHHH--HHHHHHHHHHHHHHHHHHHC-CCCEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 97557654--41015899999999999864-9957983007775111466631688999999999865411466178760
Q ss_pred ECCHHHHHHHHCCCHHHHC--CCC-EEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 2171688864105988873--675-0883389989899999999999954409988999999999700012489989256
Q 002623 390 ATTLDEYRKYIEKDPALER--RFQ-QVYVDQPNVEDTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDK 466 (899)
Q Consensus 390 at~~~~~~~~~~~~~~l~~--Rf~-~i~i~~p~~ee~~~Il~~~~~~~~~~~~v~i~~~al~~~~~ls~~~~~~~~~p~~ 466 (899)
+||.+. .+++++.+ ||. .+.++.|+.+++..|++.+...+.....+ .+..++..+.+| .+..
T Consensus 346 atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~-----~l~~la~~t~g~-----~g~d 410 (806)
T 1ypw_A 346 ATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-----DLEQVANETHGH-----VGAD 410 (806)
T ss_dssp ECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC-----CTHHHHHSCSSC-----CHHH
T ss_pred CCCCCH-----HCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHCCC-----CHHH
T ss_conf 239810-----0499986465544435569999999999999987338776220-----067777761475-----3689
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999986235106991159999999999999997501374332399999999999999999999999999999999
Q 002623 467 AIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVM 546 (899)
Q Consensus 467 a~~lld~a~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l 546 (899)
...++..+........... .
T Consensus 411 l~~l~~ea~~~a~r~~~~~-i----------------------------------------------------------- 430 (806)
T 1ypw_A 411 LAALCSEAALQAIRKKMDL-I----------------------------------------------------------- 430 (806)
T ss_dssp HHHHHHHHHHHHHHHTTTT-T-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCC-C-----------------------------------------------------------
T ss_conf 9999999999987642010-1-----------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99999999999975999999983308888986104689999999999999999762186533456774339999998816
Q 002623 547 TRIQSIKEEIDRVNLEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISSGKSMLREEVTGSDIAEIVSKWTG 626 (899)
Q Consensus 547 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~v~~~~i~~~i~~~~g 626 (899)
++.. ..+... ......++..++...+.....
T Consensus 431 ------------------------~~~~--------------------~~~~~~-----~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 431 ------------------------DLED--------------------ETIDAE-----VMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp ------------------------SCHH--------------------HHCCHH-----HHTTCCCCTTHHHHHHHHSCC
T ss_pred ------------------------CHHH--------------------HCCCHH-----HHHHHHHHHHHHHCCCCCCCC
T ss_conf ------------------------1554--------------------201012-----444555556653111123571
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCC----CCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 995310134789988599851363004525899999999998748----9999997413697526888089999999998
Q 002623 627 IPVSKLQQSEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAG----LSDPHRPIASFMFMGPTGVGKTELAKALASY 702 (899)
Q Consensus 627 ~p~~~~~~~~~~~l~~l~~~l~~~i~gq~~a~~~l~~~i~~~~~~----~~~~~~p~~~ill~Gp~GtGKT~lA~~la~~ 702 (899)
..... .........|..+.|++.+++.+...+...... ......+..++||+||||||||++|++++..
T Consensus 462 s~~~~-------~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 462 SALRE-------TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCC-------CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred HHHHH-------HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 44420-------00257542111124430222218999975553639897548887753689779998789999999998
Q ss_pred HCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCC--------------HHHH
Q ss_conf 42899846996353420122244221899987544455311489860998499994897469--------------5799
Q 002623 703 MFNTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAH--------------SDVF 768 (899)
Q Consensus 703 l~~~~~~~i~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~Vi~iDEid~l~--------------~~~~ 768 (899)
+ +.+++.++++++... ++|..... .+.++...+...++|+||||||.+. ..++
T Consensus 535 ~---~~~~i~v~~~~l~~~-----~~g~~~~~-----i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~ 601 (806)
T 1ypw_A 535 C---QANFISIKGPELLTM-----WFGESEAN-----VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601 (806)
T ss_dssp H---TCCCCCCCCSSSTTC-----CTTTSSHH-----HHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHH
T ss_pred H---CCCEEEEECHHHHHH-----HCCCCHHH-----HHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 4---898799861676553-----05754788-----9999999870698599998744542112687777641689999
Q ss_pred HHHHHHHCCCEEECCCCCEEEECCEEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH--CCCEE
Q ss_conf 9999951079054189955550788999923878244320377889881318999999999997009867881--12607
Q 002623 769 NVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMN--RVDEY 846 (899)
Q Consensus 769 ~~Ll~~le~g~~~d~~g~~~~~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~p~ll~--R~d~~ 846 (899)
+.|+..|+... ...+++||+|||. ...++|++++ ||+.+
T Consensus 602 ~~LL~~ld~~~---------~~~~v~vI~tTN~------------------------------~~~ld~allrpgRf~~~ 642 (806)
T 1ypw_A 602 NQILTEMDGMS---------TKKNVFIIGATNR------------------------------PDIIDPAILRPGRLDQL 642 (806)
T ss_dssp HHHHTTCC---------------CCBCCCCCBS------------------------------CGGGSCTTSSGGGTTSC
T ss_pred HHHHHHHHCCC---------CCCCEEEEEECCC------------------------------CCCCCHHHHCCCCCCCE
T ss_conf 99999875456---------6687699984387------------------------------12279878376556730
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHH-------HCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 766999998999999999998884-------403478766999999840112221
Q 002623 847 IVFQPLDRDQISSIVRLQVSFSKV-------SWIYSPWHFNYEMLVKFCYLAFTI 894 (899)
Q Consensus 847 i~f~~ls~~~i~~I~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~ 894 (899)
|.|++++.++...|++.++.+... .+......++...+..+|..++..
T Consensus 643 i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~ 697 (806)
T 1ypw_A 643 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 697 (806)
T ss_dssp CCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 5559979999999999986459997522799999735005999999999999999
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=1.00 E-value=1 Score=235.43 Aligned_cols=255 Identities=63% Similarity=0.985 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 47899885998513630045258999999999987489999997413697526888089999999998428998469963
Q 002623 635 SEREKLLHLEEELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRID 714 (899)
Q Consensus 635 ~~~~~l~~l~~~l~~~i~gq~~a~~~l~~~i~~~~~~~~~~~~p~~~ill~Gp~GtGKT~lA~~la~~l~~~~~~~i~i~ 714 (899)
.+...+..+...+...++||+.+++.+...+...+.+..++.+|.++++|+||||||||++|+++++.+...+.+++.++
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 47789999999996252898999999999999986577888998628999899995799999999999738876348960
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCEEEECCEE
Q ss_conf 53420122244221899987544455311489860998499994897469579999999510790541899555507889
Q 002623 715 MSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTV 794 (899)
Q Consensus 715 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~Vi~iDEid~l~~~~~~~Ll~~le~g~~~d~~g~~~~~~~~i 794 (899)
|+.+........++|.+++++++...+.+.+.+..++++|+||||+|++++.+++.|++.|+++.+.+..+..+++++++
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECHHHCCHHHHHHHHHHHHCCEEECCCCCEEECCCCE
T ss_conf 65546632288726999865560455068999985998199995734339899999999984597976999778777758
Q ss_pred EEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99923878244320377889881318999999999997009867881126077669999989999999999988844034
Q 002623 795 IIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFSKVSWIY 874 (899)
Q Consensus 795 iI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~p~ll~R~d~~i~f~~ls~~~i~~I~~~~l~~~~~~~~~ 874 (899)
+|+|||.+...+.+.... .. ..+.+.+.+.+.+...|+|+|++||+.++.|+|++.+++..|+++++.++..++..
T Consensus 163 iI~ttn~~~~~i~~~~~~-~~---~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQK-GW---PYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEESTTHHHHHTTTTS-CC---CSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHCC-CC---CHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999246687999754314-66---48999999999998758998982478599807899999999999999999999996
Q ss_pred --CCCCCCHHHHHHHHCCCCC
Q ss_conf --7876699999984011222
Q 002623 875 --SPWHFNYEMLVKFCYLAFT 893 (899)
Q Consensus 875 --~~~~~~~~~l~~~~~~~~~ 893 (899)
....++.+++..++.++|.
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~ 259 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYD 259 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCB
T ss_pred CCCEEEECHHHHHHHHHHCCC
T ss_conf 896797199999999983778
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=217.05 Aligned_cols=386 Identities=19% Similarity=0.240 Sum_probs=231.3
Q ss_pred CCHHHHHCCCCCHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
Q ss_conf 10021101244303110362222344200101579899998443119999999999999998299974899999999706
Q 002623 39 ANFFKGLNFNSVQLKKRNGLFSKGHDKLFLIRCEATSGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLEQ 118 (899)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlall~~ 118 (899)
..+.++|...|++++.++..++..+++.- +. .. ...||+.++++|+.|..+|+++|+.+|+|||||+||+.+
T Consensus 44 ~~~~~iL~~~gvd~~~l~~~l~~~l~~~~--~~---~~---~~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~ 115 (758)
T 3pxi_A 44 GIAAKALQALGLGSEKIQKEVESLIGRGQ--EM---SQ---TIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIRE 115 (758)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHTTSCCCC--TT---CS---SCEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHCCCC--CC---CC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 57999999839999999999998735477--77---78---888798999999999999998599942699999999725
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC------CC----------------------CCCCCCHHHHHHHHH
Q ss_conf 88579999998499999999999998630887778------98----------------------877689669999999
Q 002623 119 KNGLARRIFSKVGVDNTRLLEATEKFIQRQPKVLG------ET----------------------AGSMLGRDLEALIQR 170 (899)
Q Consensus 119 ~~~~~~~~L~~~gvd~~~i~~~~~~~~~~~~~~~~------~~----------------------~~~~~s~~~~~~l~~ 170 (899)
+++.+.++|.++|++.+.++..+....+....... .. ..+.-++.+..+++.
T Consensus 116 ~~~~a~~~L~~~gv~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~ 195 (758)
T 3pxi_A 116 GEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEV 195 (758)
T ss_dssp CCSHHHHHHHHTTCCHHHHHHHHHTTCCCCCTTC-----CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 77678899988399999999999998467766655555665102668999999999988618988764866999999999
Q ss_pred HHHHH----HHCCCCCCCHHHHHHHHHCC-----------C-C----------------HHHHHHH--------------
Q ss_conf 99999----98099966877999886306-----------8-4----------------1456777--------------
Q 002623 171 SREYK----KEYGDSFVSVEHLVLGFTQD-----------Q-R----------------FGKQLFR-------------- 204 (899)
Q Consensus 171 A~~~a----~~~g~~~I~~ehlllall~~-----------~-~----------------~~~~ll~-------------- 204 (899)
..... .-.|.+.+|...+.-++... . . ....++.
T Consensus 196 l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~ 275 (758)
T 3pxi_A 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFIDA 275 (758)
T ss_dssp HHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEECC
T ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 84778897589899998999999999999752789723248869995166443545899999999999855997999868
Q ss_pred ----------------------------------------HC---C---CCHHHHHHHHHHHHCC----CCC--C-----
Q ss_conf ----------------------------------------50---8---8735689899987236----554--5-----
Q 002623 205 ----------------------------------------DF---Q---ISLPTLKSAIEAIRGR----QSV--I----- 227 (899)
Q Consensus 205 ----------------------------------------~~---g---i~~~~l~~~i~~~~~~----~~~--~----- 227 (899)
.| . .+.+.....+...... ..+ .
T Consensus 276 ~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~ 355 (758)
T 3pxi_A 276 AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIE 355 (758)
T ss_dssp --------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 66599988999865987999678838888876245999962847883899999999999999999998629987879999
Q ss_pred -----------C-CCCCCCHHHHHHHCC----------------------------------------------------
Q ss_conf -----------7-999851378873102----------------------------------------------------
Q 002623 228 -----------D-QDPEGKYEALEKYGK---------------------------------------------------- 243 (899)
Q Consensus 228 -----------~-~~~~~~~~~l~~~~~---------------------------------------------------- 243 (899)
. ..|......+...+.
T Consensus 356 ~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 435 (758)
T 3pxi_A 356 AAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQ 435 (758)
T ss_dssp HHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99997540056676971799999999899986224799504668999999999999988474799999999999999999
Q ss_pred ----------------------CHHHHHHC--------------C--------CCCCCCCCHHHHHHHHHHHHCCC----
Q ss_conf ----------------------29988865--------------9--------99997675499999999960079----
Q 002623 244 ----------------------DLTAMASA--------------G--------KLDPVIGRDDEIRRCIQILSRRT---- 275 (899)
Q Consensus 244 ----------------------~l~~~~~~--------------~--------~l~~ivg~~~~i~~~~~~l~~~~---- 275 (899)
++...... . -...++|++..++.+...+.+..
T Consensus 436 l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~ 515 (758)
T 3pxi_A 436 VEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLK 515 (758)
T ss_dssp HHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999875413676117999999999885898587617799999999999838681739999999999999970467
Q ss_pred -----CCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE
Q ss_conf -----998488869999299999999999645998644589729999763101135545407999999999998608984
Q 002623 276 -----KNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESEGQI 350 (899)
Q Consensus 276 -----~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~l~~~~~~~i~~~~l~~~~~~~g~~~~~l~~l~~~~~~~~~~~ 350 (899)
..++||+||||||||++|+++++.+.. .+.+++.++|+.+....... ...+.++.....++
T Consensus 516 ~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~-------~~~~~i~i~~s~~~~~~~~~-------~~~l~~~~~~~~~~ 581 (758)
T 3pxi_A 516 DPKRPIGSFIFLGPTGVGKTELARALAESIFG-------DEESMIRIDMSEYMEKHSTS-------GGQLTEKVRRKPYS 581 (758)
T ss_dssp CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHS-------CTTCEEEEEGGGGCSSCCCC----------CHHHHHHCSSS
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEECHHCCCCCCCC-------CCHHHHHHHHCCCE
T ss_conf 88998349999889998799999999998559-------97666997120026643445-------64145999949983
Q ss_pred EEEECCCHHHCCCCCCCCHHHHHHHHHHHHCCC-------------CEEEEEECCHHH-----HHH--HHCCCHHHHCCC
Q ss_conf 999825101002898884378999884213189-------------869998217168-----886--410598887367
Q 002623 351 ILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG-------------ELRCIGATTLDE-----YRK--YIEKDPALERRF 410 (899)
Q Consensus 351 ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g-------------~i~iI~at~~~~-----~~~--~~~~~~~l~~Rf 410 (899)
|||||||+.+. .++++.|+++++.| ++++|+|||... ... ...+.|.|.+||
T Consensus 582 vl~lDEi~~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl 653 (758)
T 3pxi_A 582 VVLLDAIEKAH--------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRI 653 (758)
T ss_dssp EEEEECGGGSC--------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTS
T ss_pred EEEEECCCCCC--------HHHHHHHHHHHCCCEEECCCCCEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 99995710059--------9999999998546768758997843677699993788713379999999962899999447
Q ss_pred C-EEEECCCCHHHHHHHHHHHHHHHHHH-----HCCCCCHHHHHHHHHHC
Q ss_conf 5-08833899898999999999999544-----09988999999999700
Q 002623 411 Q-QVYVDQPNVEDTISILRGLRERYELH-----HGVRISDSALVEAAILS 454 (899)
Q Consensus 411 ~-~i~i~~p~~ee~~~Il~~~~~~~~~~-----~~v~i~~~al~~~~~ls 454 (899)
+ .|.|++|+.+++..|++..+..+... ..+.++++++..++..+
T Consensus 654 ~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 703 (758)
T 3pxi_A 654 DEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEG 703 (758)
T ss_dssp SEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGG
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHC
T ss_conf 85996599799999999999999999999967995997999999999828
No 9
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=1.00 E-value=1 Score=202.29 Aligned_cols=390 Identities=15% Similarity=0.171 Sum_probs=229.2
Q ss_pred CCHHHHHCCCCCHHHHCCCCCCCCCCCCHHHCCCC-CCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
Q ss_conf 10021101244303110362222344200101579-89999844311999999999999999829997489999999970
Q 002623 39 ANFFKGLNFNSVQLKKRNGLFSKGHDKLFLIRCEA-TSGRITQQDFTDMAWQAIVSSPDVAKENKHQIVETEHLLKALLE 117 (899)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~a~~~l~~A~~~A~~~~~~~v~~eHlLlall~ 117 (899)
..+.++|...|++++.++..++..+++.....+++ .... ..||+.++++|+.|..+|+..|+.+|++||||+||+.
T Consensus 38 ~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~---~~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 38 PSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERD---TQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCC---CEECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHC
T ss_conf 4799999984999899999999998334887777666677---7859899999999999999839977608999999861
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC-----CC--C--C--C-C---CCCCCCCHHHHHHH--------------
Q ss_conf 6885799999984999999999999986308-----87--7--7--8-9---88776896699999--------------
Q 002623 118 QKNGLARRIFSKVGVDNTRLLEATEKFIQRQ-----PK--V--L--G-E---TAGSMLGRDLEALI-------------- 168 (899)
Q Consensus 118 ~~~~~~~~~L~~~gvd~~~i~~~~~~~~~~~-----~~--~--~--~-~---~~~~~~s~~~~~~l-------------- 168 (899)
++++.+.++|..+|++.+.+...+....... +. . . . + .....|+..+....
T Consensus 115 ~~~~~a~~~L~~~gi~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~ 194 (758)
T 1r6b_X 115 EQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLARVGGIDPLIGREKE 194 (758)
T ss_dssp CTTCHHHHHHHHTTCCHHHHHHHHHTC---------------------------CCSSSCBHHHHHHTTCSCCCCSCHHH
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 66425788888719988999999987321123433556554445556654313799986757999854999876687999
Q ss_pred -HHHHHHHH--------HCCCCCCCHHHHHHHHHCCC---C----------H--------------------HHHHHH--
Q ss_conf -99999999--------80999668779998863068---4----------1--------------------456777--
Q 002623 169 -QRSREYKK--------EYGDSFVSVEHLVLGFTQDQ---R----------F--------------------GKQLFR-- 204 (899)
Q Consensus 169 -~~A~~~a~--------~~g~~~I~~ehlllall~~~---~----------~--------------------~~~ll~-- 204 (899)
+....... -.|.+.+|..++.-++...- . . ...++.
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~ 274 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL 274 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999998546788807984999989999999999997379984543887999757887436554526999999999999
Q ss_pred -----------HC-CC--------CHHHHHHHHHHHHCCCCC-----------------C-----------CCCCC--CC
Q ss_conf -----------50-88--------735689899987236554-----------------5-----------79998--51
Q 002623 205 -----------DF-QI--------SLPTLKSAIEAIRGRQSV-----------------I-----------DQDPE--GK 234 (899)
Q Consensus 205 -----------~~-gi--------~~~~l~~~i~~~~~~~~~-----------------~-----------~~~~~--~~ 234 (899)
+. .+ ....+...+..+.....+ . -..|+ ..
T Consensus 275 ~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~ 354 (758)
T 1r6b_X 275 EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_dssp SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHH
T ss_pred HHCCCEEEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHCCHHHHHCCEEEECCCCCHHHH
T ss_conf 96698499995668885167877660889999999985798699998474677555542989884766888279898999
Q ss_pred HHHHH---------------------------HHC---------CCHH-------------------------HH-----
Q ss_conf 37887---------------------------310---------2299-------------------------88-----
Q 002623 235 YEALE---------------------------KYG---------KDLT-------------------------AM----- 248 (899)
Q Consensus 235 ~~~l~---------------------------~~~---------~~l~-------------------------~~----- 248 (899)
...+. .|. .++. +.
T Consensus 355 ~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 355 VQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99999999999873389879999999999865532154585078899999999974263113688548999999998750
Q ss_pred -----------------HHCCCCCCCCCCHHHHHHHHHHHHCC---------CCCCCEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf -----------------86599999767549999999996007---------9998488869999299999999999645
Q 002623 249 -----------------ASAGKLDPVIGRDDEIRRCIQILSRR---------TKNNPVLIGEPGVGKTAISEGLAQRIVQ 302 (899)
Q Consensus 249 -----------------~~~~~l~~ivg~~~~i~~~~~~l~~~---------~~~~~LL~Gp~G~GKT~la~~la~~l~~ 302 (899)
....-...++|++..++.+...+.+. +..++||+||||||||++|+.+++.+
T Consensus 435 ~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-- 512 (758)
T 1r6b_X 435 RIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-- 512 (758)
T ss_dssp CCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH--
T ss_conf 899644556589999999999986506789999999999999964467788876589987899976999999999984--
Q ss_pred CCCCCCCCCCEEEEEECCCCCCC----------CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHH
Q ss_conf 99864458972999976310113----------55454079999999999986089849998251010028988843789
Q 002623 303 GDVPQALMNRKLISLDMGALIAG----------AKYRGEFEDRLKAVLKEVTESEGQIILFIDEIHTVVGAGATNGAMDA 372 (899)
Q Consensus 303 ~~vp~~l~~~~~~~i~~~~l~~~----------~~~~g~~~~~l~~l~~~~~~~~~~~ILfiDEi~~l~~~~~~~~~~~~ 372 (899)
+.+++.++|+.+... ..|.|..+. ..+.+......++||||||++.+. .++
T Consensus 513 --------~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~---~~l~~~~~~~~~~vl~lDEi~~~~--------~~~ 573 (758)
T 1r6b_X 513 --------GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAH--------PDV 573 (758)
T ss_dssp --------TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT---THHHHHHHHCSSEEEEEETGGGSC--------HHH
T ss_pred --------CCCEEEEECHHHCCHHHHHHHCCCCCCCCCCCCC---CHHHHHHHHCCCCEEEEECCCCCC--------HHH
T ss_conf --------5777998614521044576643899877675655---248999995799489990821039--------899
Q ss_pred HHHHHHHHCCC-------------CEEEEEECCHHH----------------------HHHHHCCCHHHHCCCC-EEEEC
Q ss_conf 99884213189-------------869998217168----------------------8864105988873675-08833
Q 002623 373 GNLLKPMLGRG-------------ELRCIGATTLDE----------------------YRKYIEKDPALERRFQ-QVYVD 416 (899)
Q Consensus 373 ~~~L~~~l~~g-------------~i~iI~at~~~~----------------------~~~~~~~~~~l~~Rf~-~i~i~ 416 (899)
++.|+++++.+ ++++|+|||... ..+ .+.|+|++||+ .|.|+
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~l~~R~~~~i~~~ 651 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK--IFTPEFRNRLDNIIWFD 651 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHH--HSCHHHHTTCSEEEECC
T ss_pred HHHHHHHHCCCEEECCCCCEEECCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHH--HCCHHHHHHCCCCEEEC
T ss_conf 9999998647579828997772587389982475524443224676541067889999987--55999996378404647
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHC
Q ss_conf 8998989999999999995440-----9988999999999700
Q 002623 417 QPNVEDTISILRGLRERYELHH-----GVRISDSALVEAAILS 454 (899)
Q Consensus 417 ~p~~ee~~~Il~~~~~~~~~~~-----~v~i~~~al~~~~~ls 454 (899)
+++.+++..|++..+.++.... .+.++++++..++..+
T Consensus 652 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 652 HLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHC
T ss_conf 9999999999999999999999978938996899999999808
No 10
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=1.00 E-value=1 Score=200.39 Aligned_cols=445 Identities=16% Similarity=0.218 Sum_probs=223.3
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH---------
Q ss_conf 99984888699992999999999996459986445897299997631011355454079999999999986---------
Q 002623 275 TKNNPVLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDMGALIAGAKYRGEFEDRLKAVLKEVTE--------- 345 (899)
Q Consensus 275 ~~~~~LL~Gp~G~GKT~la~~la~~l~~~~vp~~l~~~~~~~i~~~~l~~~~~~~g~~~~~l~~l~~~~~~--------- 345 (899)
..+++||+||||||||++|+.+.... .+..++.+++++..... .+...+.....
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~~--------~~~~~i~~~~~~~~~~~g~~ 1328 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTTE--------HILSALHRHTNYVTTSKGLT 1328 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCHH--------HHHHHHHHHBCCEEETTTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC---------CCCCEEEEEEECCCCHH--------HHHHHHHHHHHHCCCCCCCC
T ss_conf 79908998999998899999999628---------77843899950677889--------99999998740111247740
Q ss_pred -----HCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHHHCCC--------------CEEEEEECCHHHHHHHHCCCHHH
Q ss_conf -----08984999825101002898884378999884213189--------------86999821716888641059888
Q 002623 346 -----SEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRG--------------ELRCIGATTLDEYRKYIEKDPAL 406 (899)
Q Consensus 346 -----~~~~~ILfiDEi~~l~~~~~~~~~~~~~~~L~~~l~~g--------------~i~iI~at~~~~~~~~~~~~~~l 406 (899)
.+.++|+||||++. +..+..|+.....+|+++++.| ++.+|+|||++...+...++++|
T Consensus 1329 ~~P~~~gk~~VlFiDEinm--p~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1329 LLPKSDIKNLVLFCDEINL--PKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEBSSSSCEEEEEETTTC--SCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred CCCCCCCCEEEEEECCCCC--CCCCCCCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEEECCCCCCCCCCCCCHHH
T ss_conf 2588788328998513455--34354576108999999985498788678867874688999963897667876688666
Q ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH-CC-CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH----HH
Q ss_conf 73675088338998989999999999995440-99-88999999999700012489989256999999999862----35
Q 002623 407 ERRFQQVYVDQPNVEDTISILRGLRERYELHH-GV-RISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL----KM 480 (899)
Q Consensus 407 ~~Rf~~i~i~~p~~ee~~~Il~~~~~~~~~~~-~v-~i~~~al~~~~~ls~~~~~~~~~p~~a~~lld~a~~~~----~~ 480 (899)
.|||..+.++.|+.+++..|+..+...+.... .+ .+.+.... ..+++........ +.
T Consensus 1407 lRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~-----------------ati~~y~~v~~~~~~~~k~ 1469 (2695)
T 4akg_A 1407 TRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFAR-----------------ASVHLYNECKARYSTGLQS 1469 (2695)
T ss_dssp HTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHH-----------------HHHHHHHHHHHHSCTTTCT
T ss_pred HHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------HHHHHHHHHHHHCCCCCCC
T ss_conf 54536999479999999999999999885357778898898889-----------------9999999999875886677
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10699115999999999999999750137433239999999999999999999999999999999999999999999975
Q 002623 481 EITSKPTALDEINRSVLKLEMERLSLTNDTDKASKDRLNRLEAELSLLKERQAQLTEQWEHEKTVMTRIQSIKEEIDRVN 560 (899)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~e~~~l~~~l~~l~~~~~~e~~~l~~~~~~~e~~~~~~ 560 (899)
+....++++..+-+.+.....+. .......+.+.|.+||.++-..+-+.++=
T Consensus 1470 HY~FnlRDLsrv~qGll~~~~~~------------------------~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D---- 1521 (2695)
T 4akg_A 1470 HYLFSPRELTRLVRGVYTAINTG------------------------PRQTLRSLIRLWAYEAWRIFADRLVGVKE---- 1521 (2695)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTS------------------------SCCCHHHHHHHHHHHHHHHHTTTCCSSHH----
T ss_pred CCCCCHHHHHHHHHHHHHCCCHH------------------------HHCCHHHHHHHHHHHHHHHHHHHCCCHHH----
T ss_conf 86367999999999998417233------------------------11138999999999999999884388889----
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC-C------CCCC--------CCCCCHHHHHHHHHHHH
Q ss_conf 9999999833088889861046899999999999999997621-8------6533--------45677433999999881
Q 002623 561 LEIQQAEREYDLNRAAELKYGSLNALQRQLESAEKELNEYISS-G------KSML--------REEVTGSDIAEIVSKWT 625 (899)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~-~------~~~~--------~~~v~~~~i~~~i~~~~ 625 (899)
.......+.+ .+.+.... . .+.+ -.++....+...+.
T Consensus 1522 ----------------------~~~f~~~l~~---~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~~~l~~~l~--- 1573 (2695)
T 4akg_A 1522 ----------------------KNSFEQLLYE---TVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIE--- 1573 (2695)
T ss_dssp ----------------------HHHHHHHHHH---HHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCHHHHHHHHH---
T ss_pred ----------------------HHHHHHHHHH---HHHHHHCCCCHHHHCCCCCEEEECCCCCCEECCHHHHHHHHH---
T ss_conf ----------------------9999999999---999981531054543588634116877650167899999999---
Q ss_pred CCCCCCCHHHHHHHHHHHH-HHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6995310134789988599-851363004525899999999998748999999741369752688808999999999842
Q 002623 626 GIPVSKLQQSEREKLLHLE-EELHKRVVGQDPAVKSVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMF 704 (899)
Q Consensus 626 g~p~~~~~~~~~~~l~~l~-~~l~~~i~gq~~a~~~l~~~i~~~~~~~~~~~~p~~~ill~Gp~GtGKT~lA~~la~~l~ 704 (899)
+.+.... ....-+++-.+++++.+....+..+ +|.||+||+|.+|+||++++|..|...
T Consensus 1574 ------------~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~-------~p~G~~LLvGvgGsGkqSltrLaa~i~- 1633 (2695)
T 4akg_A 1574 ------------ERFKTFCDEELEVPMVIHESMVDHILRIDRALK-------QVQGHMMLIGASRTGKTILTRFVAWLN- 1633 (2695)
T ss_dssp ------------HHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHH-------SSSEEEEEECTTTSCHHHHHHHHHHHT-
T ss_pred ------------HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHC-------CCCCCEEEECCCCCCHHHHHHHHHHHH-
T ss_conf ------------999999751578415628999999999999982-------799877998899985899999999983-
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEECCC
Q ss_conf 89984699635342012224422189998754445531148986099849999489746957999999951079054189
Q 002623 705 NTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEVVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQ 784 (899)
Q Consensus 705 ~~~~~~i~i~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~Vi~iDEid~l~~~~~~~Ll~~le~g~~~d~~ 784 (899)
+..++.+..+.-.+...+...+ ...+..+--+..+.|++|+|.+-..+.+++.+..+|.+|++.+-.
T Consensus 1634 --~~~~fqi~~~~~Y~~~~f~eDL-----------k~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF 1700 (2695)
T 4akg_A 1634 --GLKIVQPKIHRHSNLSDFDMIL-----------KKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLF 1700 (2695)
T ss_dssp --TCEEECCCCCTTCCHHHHHHHH-----------HHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTS
T ss_pred --CCEEEEEEEECCCCHHHHHHHH-----------HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf --8905999850889889999999-----------999997577898659997155446679999999987348777889
Q ss_pred -------------------CCEEE-------------ECCEEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf -------------------95555-------------0788999923878244320377889881318999999999997
Q 002623 785 -------------------GRTVS-------------FTNTVIIMTSNVGSQYILNMDDETFPKETAYETIKQRVMDAAR 832 (899)
Q Consensus 785 -------------------g~~~~-------------~~~~iiI~ttN~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 832 (899)
|...+ ..|..||+|.++.++. ++.+
T Consensus 1701 ~~dE~~~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~-----------------fr~R------ 1757 (2695)
T 4akg_A 1701 QGEEYDKLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNN-----------------KSSA------ 1757 (2695)
T ss_dssp CTHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSH-----------------HHHH------
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHH-----------------HHHH------
T ss_conf 87789999987689999639999998999999999999727899998999758-----------------8999------
Q ss_pred HCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 009867881126077669999989999999999988
Q 002623 833 SIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQVSFS 868 (899)
Q Consensus 833 ~~~~p~ll~R~d~~i~f~~ls~~~i~~I~~~~l~~~ 868 (899)
-+--|+|+++| .+-.|.+...+.+..+..+++..+
T Consensus 1758 ~r~fPaLvn~c-tIdWf~~Wp~eAL~~Va~~fl~~~ 1792 (2695)
T 4akg_A 1758 MISSPALFNRC-IINWMGDWDTKTMSQVANNMVDVI 1792 (2695)
T ss_dssp HHHSHHHHHHS-EEEECCSCCHHHHHHHHHHHSCSC
T ss_pred HHHCHHHHCCE-EEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99682766063-674147799999999999985226
Done!