Query 002624
Match_columns 899
No_of_seqs 350 out of 810
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 16:28:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002624.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1342-1346//hhsearch_pdb/002624hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 216.9 13.3 115 118-232 5-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 130.9 11.2 98 123-230 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 101.0 10.2 94 124-228 8-101 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 43.1 6.9 93 123-216 17-123 (404)
5 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 31.6 4.3 63 763-831 2-80 (102)
6 2ktr_A Sequestosome-1; autopha 1.0 1 1 29.9 4.2 62 763-830 17-94 (117)
7 1vd2_A Protein kinase C, IOTA 1.0 1 1 26.9 7.2 57 765-828 5-61 (89)
8 4b8c_D Glucose-repressible alc 1.0 1 1 26.3 -0.1 81 479-563 53-133 (727)
9 1wmh_B Partitioning defective- 1.0 1 1 25.2 6.5 69 766-841 6-76 (86)
10 1q1o_A Cell division control p 1.0 1 1 23.5 6.7 67 763-831 2-75 (98)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=216.86 Aligned_cols=115 Identities=29% Similarity=0.464 Sum_probs=106.5
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEECCCCC
Q ss_conf 99999852389960436799999414602136330999999999996089985269990699899828997125424620
Q 002624 118 TLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWS 197 (899)
Q Consensus 118 ~~~~~~~~lF~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs 197 (899)
...+....+|+|+||+|||++++||+||+++||.+||+++..+.+++++|.++|.+|++|+|||+||+++++|+||+||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHH
T ss_conf 78999862499998557718977799678999966886544457883899999589999999999978999638837748
Q ss_pred CCCCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 00013577679879999827--983799888069999
Q 002624 198 VFVSAKRLVAGDSVLFIWND--KNQLLLGIRRANRPP 232 (899)
Q Consensus 198 ~FV~~KkL~aGDsVvF~R~~--~g~L~vGIRRa~r~~ 232 (899)
.||++|+|++||.|+|++.+ .++|+|++||+.++.
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 8778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=130.87 Aligned_cols=98 Identities=20% Similarity=0.309 Sum_probs=85.1
Q ss_pred CCEEEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEECCCCCCCCCC
Q ss_conf 85238996043679999941460213633099999999999608998526999069989982899712542462000013
Q 002624 123 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 202 (899)
Q Consensus 123 ~~~lF~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~ 202 (899)
...+|.|+||+||+.+..++.||+++|+.+||..+ ..+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHH
T ss_conf 99989999785661898679909999997488888-------37999979-9478989999589--07877763898887
Q ss_pred CCCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 57767987999982798--37998880699
Q 002624 203 KRLVAGDSVLFIWNDKN--QLLLGIRRANR 230 (899)
Q Consensus 203 KkL~aGDsVvF~R~~~g--~L~vGIRRa~r 230 (899)
++|++||.++|...++. .+.|.|-|+.-
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 599989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=100.95 Aligned_cols=94 Identities=22% Similarity=0.394 Sum_probs=80.5
Q ss_pred CEEEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEECCCCCCCCCCC
Q ss_conf 52389960436799999414602136330999999999996089985269990699899828997125424620000135
Q 002624 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (899)
Q Consensus 124 ~~lF~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (899)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|++|.+++.++. +++.|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCC--CCEEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHHC
T ss_conf 9878999877775--531888999998648669-------9889999799999999999989--9499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 7767987999982798379988806
Q 002624 204 RLVAGDSVLFIWNDKNQLLLGIRRA 228 (899)
Q Consensus 204 kL~aGDsVvF~R~~~g~L~vGIRRa 228 (899)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECC
T ss_conf 9998989999985897699999789
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=43.14 Aligned_cols=93 Identities=23% Similarity=0.347 Sum_probs=66.9
Q ss_pred CCEEEEEEECCCCCCCCC----CEEECHHHHHHCCCCCC-CCCCCCCEEEEE--EECCCCEEEEEEEECC------CCCC
Q ss_conf 852389960436799999----41460213633099999-999999608998--5269990699899828------9971
Q 002624 123 PTNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPPLD-FSQQPPAQELIA--RDLHDNEWKFRHIFRG------QPKR 189 (899)
Q Consensus 123 ~~~lF~K~LT~SDv~~~g----rfsVPk~~AE~~FPpLd-~~~~~p~q~L~v--~D~~G~~W~FR~iyrg------~prr 189 (899)
....|+|.|++.|++..| +|.+|+.....+||.|+ .....|.+.+.+ -|...-++.++.+|++ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCCC-CCCCCCCCCCCEEEEEEC
Q ss_conf 254246200-001357767987999982
Q 002624 190 HLLTTGWSV-FVSAKRLVAGDSVLFIWN 216 (899)
Q Consensus 190 hlLTtGWs~-FV~~KkL~aGDsVvF~R~ 216 (899)
|.||. |.. +.-.....+||.++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=31.64 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=44.2
Q ss_pred CCCCCEEEEEECC-----CCEEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9985528982027-----5114540699-----------89978999999988358786679999961898983789656
Q 002624 763 PPNRTFVKVYKSG-----SFGRSLDITK-----------FSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVL 826 (899)
Q Consensus 763 ~~~~~~VKV~m~G-----~igRkIDL~~-----------~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~m 826 (899)
|..++-||+|..| .--|..-|.. -.+|++|+..+.++|..- ....+++.|.|.|||+.
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEE
T ss_conf 974699999981677778726998833677754222446666999999999975445------79838999998999989
Q ss_pred ECCCC
Q ss_conf 42688
Q 002624 827 LLGDG 831 (899)
Q Consensus 827 LvGDv 831 (899)
-..++
T Consensus 76 tiSsD 80 (102)
T 2kkc_A 76 AFSSD 80 (102)
T ss_dssp EECSH
T ss_pred EECCH
T ss_conf 76488
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=29.87 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=43.6
Q ss_pred CCCCCEEEEEECC-----CCEEEECCC-----------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9985528982027-----511454069-----------989978999999988358786679999961898983789656
Q 002624 763 PPNRTFVKVYKSG-----SFGRSLDIT-----------KFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVL 826 (899)
Q Consensus 763 ~~~~~~VKV~m~G-----~igRkIDL~-----------~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~m 826 (899)
+...+-||++..| .--|..-|. .-.+|++|+..+.++|..- ....+++.|.|.|||+.
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L------~~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 90 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEE
T ss_conf 445289999980677788727998842677743112456777999999999973455------89838999998999989
Q ss_pred ECCC
Q ss_conf 4268
Q 002624 827 LLGD 830 (899)
Q Consensus 827 LvGD 830 (899)
-...
T Consensus 91 tISs 94 (117)
T 2ktr_A 91 AFSS 94 (117)
T ss_dssp EECS
T ss_pred EECC
T ss_conf 7638
No 7
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=26.85 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEC
Q ss_conf 8552898202751145406998997899999998835878667999996189898378965642
Q 002624 765 NRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLL 828 (899)
Q Consensus 765 ~~~~VKV~m~G~igRkIDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~mLv 828 (899)
...=||++-.|. .|.+.+..--+|++|...+..+|.+. ....+++.|.|.|||+.-+
T Consensus 5 ~~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 5 SQVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp SCEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEEC
T ss_pred CEEEEEEEECCE-EEEEECCCCCCHHHHHHHHHHHHCCC------CCCEEEEEEECCCCCCCCC
T ss_conf 718999994785-99998799989999999999996889------8982799999899795033
No 8
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=26.27 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11123431158520010244211124432112331112001110244465577999997545665567731132231222
Q 002624 479 LVQSQMLQQSHPQQTFLQGVQENQHQSQSQTHSQSHLLQPQLQHSHSFNNQQQQPLPQPQQQVDHQQIPSAVSAMSQFAS 558 (899)
Q Consensus 479 ~~~~q~~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 558 (899)
+.+.++.||.++++...|+.++++.+++. |.+-+|||.|+++...++++++|+++......++............+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~----q~~~qqq~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 128 (727)
T 4b8c_D 53 LAAVSAQSLGQPNIYARQNAMKKYLATQQ----AQQAQQQAQQQAQQQVPGPFGPGPQAAPPALQPTDFQQSHIAEASKS 128 (727)
T ss_dssp HHHHHHHSTTSTTHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHCHHCCCCCHHHHHHHHHHHHHHHHC----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
T ss_conf 87633121266049999999998875013----06678887760667666765668666752000232126566533342
Q ss_pred CCCCC
Q ss_conf 56789
Q 002624 559 VSQSQ 563 (899)
Q Consensus 559 ~~~~~ 563 (899)
.....
T Consensus 129 ~~~~~ 133 (727)
T 4b8c_D 129 LVDCT 133 (727)
T ss_dssp ---CC
T ss_pred CCCCC
T ss_conf 02563
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=25.22 Aligned_cols=69 Identities=22% Similarity=0.181 Sum_probs=51.2
Q ss_pred CCEEEEEECCCCEE-EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECC-CCCCHHHHCCEE
Q ss_conf 55289820275114-54069989978999999988358786679999961898983789656426-888021102233
Q 002624 766 RTFVKVYKSGSFGR-SLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLG-DGPWPEFVNSVW 841 (899)
Q Consensus 766 ~~~VKV~m~G~igR-kIDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~mLvG-DvPWe~Fv~svk 841 (899)
-.-||.+-++.+-| ++|-..-.+|++|..-++++|.+. ...+++.|.|.+||++-.- |+-..+-+.+++
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC-------CCCEEEEEECCCCCEEEECCHHHHHHHHHHCC
T ss_conf 799986338804676726887878899999999975789-------98789999889999761458899999997288
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=23.50 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCCCCEEEEEECC-------CCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 9985528982027-------51145406998997899999998835878667999996189898378965642688
Q 002624 763 PPNRTFVKVYKSG-------SFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDG 831 (899)
Q Consensus 763 ~~~~~~VKV~m~G-------~igRkIDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~mLvGDv 831 (899)
|..+.-|||+-.. .=.|.|=+..--+|++|...+..-|+.. .-++- ....++-|+|.|||+...+|+
T Consensus 2 ~~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~i-~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 2 PLGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNNI-SPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp CSSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSCC-CCCCCEEEECSSSCEEEECSH
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC-CCCCC-CCEEEEEEECCCCCEEEECCH
T ss_conf 875189999935765666668679999669998999999999997678-65454-650479999699998877288
Done!