BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002625
(899 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
From Arabidopsis Thaliana In Complex With Coformycin
5'-Phosphate
Length = 701
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/717 (66%), Positives = 557/717 (77%), Gaps = 25/717 (3%)
Query: 186 PRTPVGNAFEDSDEDGTEHANEDDITYSNENVDAFAYMISDADSKVQSSSALPFRGDGMN 245
P++PV +A S + E +++DD ++E +DA +Y+ ++ D+++ +
Sbjct: 3 PKSPVASA---SAFESVEESDDDDNLTNSEGLDA-SYLQANGDNEMPA------------ 46
Query: 246 YVQDKNYRATINDAKPALDLHD-NGKVDKASRNAVGTETIL----YNTISQLRTTVHEPT 300
D N A + H +G + + + + + T +L + PT
Sbjct: 47 ---DANEEQISMAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNVPLEVPT 103
Query: 301 NIEEEEVWKMIQECLDLRKRYVFTEKVAPWMKEAEPETNISEMRSDPFHFVPVEASKHHF 360
+ +E E +K +QECL+LRKRYVF E VAPW KE + + + ++PF P S H F
Sbjct: 104 S-DEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSDHCF 162
Query: 361 RMEDGVVHVYASESDTTELFPVASATEFFTDMHHILRIMSIGNVRTACHHRLRFLEEKFR 420
M+DGVVHV+A++ +LFPVA AT FFTD+HH+L++++ GN+RT CH RL LE+KF
Sbjct: 163 EMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFN 222
Query: 421 LHLLVNADGEFLAQKSAPHRDFYNIRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVI 480
LHL++NAD EFLAQKSAPHRDFYN+RKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVI
Sbjct: 223 LHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVI 282
Query: 481 FRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFL 540
FRDG Y+TL+EVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFL
Sbjct: 283 FRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFL 342
Query: 541 KQDNLIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSEN 600
KQDNLIQGRFL E+TKQV DLEASKYQMAEYR+SIYGRK SEWDQLASW +NN++YSEN
Sbjct: 343 KQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSEN 402
Query: 601 AIWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLV 660
+WLIQLPRLYN+YK MGIV SFQNI+DN+FIPLFE T+DP SHPQLHVFL VVGFDLV
Sbjct: 403 VVWLIQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLV 462
Query: 661 DDESKPERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHC 720
DDESKPERRPTKHMP PA+WTN FNP KLRESKGM TI LRPH
Sbjct: 463 DDESKPERRPTKHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHS 522
Query: 721 GEAGEIDHLAAAFLLCNNISHGIHLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNP 780
GEAG+IDHLAA FL C++I+HGI+LRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNP
Sbjct: 523 GEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNP 582
Query: 781 FPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNSVYQSGFS 840
FP+FF RGLNVSLS+DDPLQIHLTKE LVEEYS+AA VWKLS+CDLCEIARNSVYQSGFS
Sbjct: 583 FPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFS 642
Query: 841 HMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLGRAIIPVEI 897
H KSHW+G Y+ RGP GNDIHKTNVP+IR+EFR WKEEMQ VYLG+A+I E+
Sbjct: 643 HALKSHWIGKDYYKRGPDGNDIHKTNVPHIRVEFRDTIWKEEMQQVYLGKAVISDEV 699
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 719 HCGEAGEIDHLAAAF--LLCNNISHGIH-LRKSPVLQYLYYLAQIGLAMSPLSNNSLFL- 774
H GE G ++ A L I HGI + + V+Q L Q+ L + PLSN L
Sbjct: 199 HAGEEGPASYITEALDVLHVERIDHGIRCMEDTDVVQRLVA-EQVPLTVCPLSNVRLRAV 257
Query: 775 -DYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIARNS 833
+P P GLNV ++SDDP + + + KV + S + +A NS
Sbjct: 258 DKLADHPLPEMLAIGLNVCVNSDDPAYFGGYVD---DNFEQLVKVLEFSVPEQATLAANS 314
Query: 834 VYQSGFSHMAKSHWL 848
+ S S K+ L
Sbjct: 315 IRSSFASDARKAVLL 329
>pdb|3OU8|A Chain A, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3OU8|B Chain B, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3PAN|A Chain A, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAN|B Chain B, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAO|A Chain A, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PAO|B Chain B, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PBM|A Chain A, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
pdb|3PBM|B Chain B, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
Length = 326
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 708 SKGMPTIKLRPHCGEAGEIDHL--AAAFLLCNNISHGIHLRKSPVLQYLYYLAQIGLAMS 765
S+G T+ H GE G +++ A L I HG+ + L QI L +
Sbjct: 188 SEGFLTVA---HAGEEGPPEYIWEALDLLKVERIDHGVRAFEDERLXRRLIDEQIPLTVC 244
Query: 766 PLSNNSL--FLDYHRNPFPMFFQRGLNVSLSSDDP 798
PLSN L F D ++ +RG+ V+++SDDP
Sbjct: 245 PLSNTKLCVFDDXSQHTILDXLERGVKVTVNSDDP 279
>pdb|3LGD|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGD|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGG|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
pdb|3LGG|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
Length = 508
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 718 PHCGEAGEIDH---------LAAAFLLCNNISHGIHLRKSPVLQYLYYLAQIGLAMSPLS 768
P+ AGE D L A L I HG L K P ++ + I + + P+S
Sbjct: 326 PYFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYSWKKDIPIEVCPIS 385
Query: 769 NNSLFL--DYHRNPFPMFFQRGLNVSLSSDDP 798
N L L D +P G + +SSDDP
Sbjct: 386 NQVLKLVSDLRNHPVATLMATGHPMVISSDDP 417
>pdb|3EWC|A Chain A, Crystal Structure Of Adenosine Deaminase From Plasmodial
Vivax In Complex With Mt-Coformycin
Length = 371
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 705 LRESKGMPTIKLRPHCGEAGEIDHL-----AAAFLLCNNISHGIHLRKSPVLQYLYYLAQ 759
+RES G+P L H GE + +L A L I HGI + +S L +
Sbjct: 216 VRES-GVP---LSVHAGEDVTLPNLNTLYSAIQVLKVERIGHGIRVAESQELIDMVKEKN 271
Query: 760 IGLAMSPLSN----NSLFLDYHRNPFPMFFQRGLNVSLSSDDP 798
I L + P+SN N+ +D H P + G+ VS++SDDP
Sbjct: 272 ILLEVCPISNVLLKNAKSMDTH--PIRQLYDAGVKVSVNSDDP 312
>pdb|3EWD|A Chain A, Crystal Structure Of Adenosine Deaminase Mutant (Delta
Asp172) From Plasmodium Vivax In Complex With
Mt-Coformycin
Length = 370
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 705 LRESKGMPTIKLRPHCGEAGEIDHL-----AAAFLLCNNISHGIHLRKSPVLQYLYYLAQ 759
+RES G+P L H GE + +L A L I HGI + +S L +
Sbjct: 215 VRES-GVP---LSVHAGEDVTLPNLNTLYSAIQVLKVERIGHGIRVAESQELIDMVKEKN 270
Query: 760 IGLAMSPLSN----NSLFLDYHRNPFPMFFQRGLNVSLSSDDP 798
I L + P+SN N+ +D H P + G+ VS++SDDP
Sbjct: 271 ILLEVCPISNVLLKNAKSMDTH--PIRQLYDAGVKVSVNSDDP 311
>pdb|2AMX|A Chain A, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
pdb|2AMX|B Chain B, Crystal Structure Of Plasmodium Yoelii Adenosine Deaminase
(Py02076)
Length = 376
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 714 IKLRPHCGEAGEIDHLAAAFLLCN-----NISHGIHLRKSPVLQYLYYLAQIGLAMSPLS 768
+ L H GE + +L + N I HGI + +S L L I L + P+S
Sbjct: 234 LHLTVHAGEDATLPNLNTLYTAINILNVERIGHGIRVSESDELIELVKKKDILLEVCPIS 293
Query: 769 ----NNSLFLDYHRNPFPMFFQRGLNVSLSSDDP 798
NN +D H P + G+ VS++SDDP
Sbjct: 294 NLLLNNVKSMDTH--PIRKLYDAGVKVSVNSDDP 325
>pdb|3K8P|C Chain C, Structural Basis For Vesicle Tethering By The Dsl1 Complex
Length = 357
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 500 GYD--LNVDLLDVHADKSTFHR-----FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLA 552
G+D L++D+ +V S F + F +F + G+S++ I+L + NL+Q F A
Sbjct: 82 GWDEELDIDVDNVPIQVSVFVQSAAKVFTEFEQGCDTIGRSKVESIYLYKFNLLQTAFFA 141
Query: 553 EVTKQV 558
V+++V
Sbjct: 142 XVSEKV 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,573,040
Number of Sequences: 62578
Number of extensions: 1051347
Number of successful extensions: 1993
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1990
Number of HSP's gapped (non-prelim): 8
length of query: 899
length of database: 14,973,337
effective HSP length: 108
effective length of query: 791
effective length of database: 8,214,913
effective search space: 6497996183
effective search space used: 6497996183
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)