Query         002625
Match_columns 899
No_of_seqs    326 out of 1711
Neff          4.8 
Searched_HMMs 29240
Date          Tue Mar 26 16:48:41 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/002625.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1342-1346//hhsearch_pdb/002625hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2a3l_A AMP deaminase, AMPD; at   1.0       1       1 1322.2  41.9  693  186-899     3-701 (701)
  2 4gxw_A Adenosine deaminase; am   1.0       1       1  445.4  21.7  315  439-851    22-353 (380)
  3 3iar_A Adenosine deaminase; pu   1.0       1       1  417.9  23.3  319  442-857     3-350 (367)
  4 3rys_A Adenosine deaminase 1;    1.0       1       1  413.6  25.9  312  443-852    11-333 (343)
  5 3pao_A Adenosine deaminase; st   1.0       1       1  397.9  18.6  305  441-843     5-321 (326)
  6 3lgd_A Adenosine deaminase CEC   1.0       1       1  362.8  25.1  268  535-852   181-472 (508)
  7 2pgf_A Adenosine deaminase; me   1.0       1       1  355.6  24.7  311  444-851    43-370 (371)
  8 3h4u_A Amidohydrolase; signatu   1.0       1       1   76.9  15.6  235  546-840   126-397 (479)
  9 3ls9_A Triazine hydrolase; atr   1.0       1       1   76.4  17.7  241  546-841   102-379 (456)
 10 4aql_A Guanine deaminase; hydr   1.0       1       1   72.0  18.4  127  706-842   252-407 (476)

No 1  
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Probab=1.00  E-value=1  Score=1322.23  Aligned_cols=693  Identities=71%  Similarity=1.166  Sum_probs=659.6

Q ss_pred             CCCCCCC--CCC---CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8997788--877---88634775-45689840015775321001357782124889866445787432333433434688
Q 002625          186 PRTPVGN--AFE---DSDEDGTE-HANEDDITYSNENVDAFAYMISDADSKVQSSSALPFRGDGMNYVQDKNYRATINDA  259 (899)
Q Consensus       186 ~~~~~~~--~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (899)
                      |||||++  ||+   +||||+++ .+.+.|+.|+++|++.+.    +   +.+|+.+...+...|+       ||+   |
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~-------r~~---s   65 (701)
T 2a3l_A            3 PKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDNEM----P---ADANEEQISMAASSMI-------RSH---S   65 (701)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C---HHHCCCHHHHHHHHHH-------HCC---C
T ss_conf             888775200024200266644211346775211145643356----1---3201000267887512-------000---0


Q ss_pred             CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             87666788898891110000121112365311111289999957999999999999973200689888875435799889
Q 002625          260 KPALDLHDNGKVDKASRNAVGTETILYNTISQLRTTVHEPTNIEEEEVWKMIQECLDLRKRYVFTEKVAPWMKEAEPETN  339 (899)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~~~~~~e~~~~~~~l~~~l~lR~kY~~~~~~~~~~~~~~~~~~  339 (899)
                       +++++|++ ++||++++|++++|. +.+||||.|++ +.++.|+++|+++|.+||.||+|||+.++.++|.++.+.++.
T Consensus        66 -~~~~~~~~-~~~~~~~~il~~~~~-~~~f~rv~i~~-~~~~~e~~~~~~~i~~al~lR~kY~~~~~~~~~~~~~~~~~~  141 (701)
T 2a3l_A           66 -VSGDLHGV-QPDPIAADILRKEPE-QETFVRLNVPL-EVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPS  141 (701)
T ss_dssp             ----------CCCTTTCCCCCCCCC-SCCCCCCCCCC-CCCCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------
T ss_pred             -CCCCCCCC-CCCCCCCCCCCCCCC-CCCCEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC
T ss_conf             -24455667-888310121247855-56642587489-999889999999999998607976256557703204554689


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             98988999866777898844981096799980899886555789978899999999999823661458889889899999
Q 002625          340 ISEMRSDPFHFVPVEASKHHFRMEDGVVHVYASESDTTELFPVASATEFFTDMHHILRIMSIGNVRTACHHRLRFLEEKF  419 (899)
Q Consensus       340 ~~~~~~~p~~~~~~~~~~~~~~~~~GV~~v~~~~~~~~~~~pip~~~~F~~D~~~l~~~i~~g~~ks~c~~RL~~Le~KF  419 (899)
                      +|++.+|||.+.+.++++|.|+|++|||+||.+++..+..+|+|+|++|+.|++.|+++|++||+||||++||+||++||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~Rl~~l~~kf  221 (701)
T 2a3l_A          142 TPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKF  221 (701)
T ss_dssp             ------CCCCCCCCCCCCCCCCCBTTBCCCCCSSCCSSCSCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             99888996667888766625985142999943777666667899999999999999999837407889999999999999


Q ss_pred             HHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCC
Q ss_conf             99995080023432027886232366765540423798898999999999841399956980389414799999752788
Q 002625          420 RLHLLVNADGEFLAQKSAPHRDFYNIRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLT  499 (899)
Q Consensus       420 ~Lh~lLN~~~E~~~~K~~p~rDFyn~pKVDlHvHLsGcm~~k~LlefIk~K~~~~p~~vV~~~~Gk~~TL~eiF~~l~l~  499 (899)
                      +||++||+.+|..++|++|||||||+||||||+||+|||+++||++|||+|++.+|+++|+.++|+.+||+++|+.++++
T Consensus       222 ~l~~~ln~~~E~~~~k~~~~~dFy~~~KVDlHvHLsg~m~~~~LLefik~k~~~~pd~vv~~~~Gk~~TL~evF~~~~l~  301 (701)
T 2a3l_A          222 NLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLT  301 (701)
T ss_dssp             HHHHHHHHHHHHHHGGGSCSCCTTTSCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHCCCC
T ss_conf             99999700677765435777751037741111466678899999999996035799853765799735299999872885


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf             76675000000345533320110113479874346899984203578589999999999999998795389999714556
Q 002625          500 GYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGR  579 (899)
Q Consensus       500 ~~dLtvd~L~~~ad~~~fhrfD~F~~kynP~g~~~Lr~iFL~tdn~i~geyLaeitkeviedle~~~vqyaElR~spyg~  579 (899)
                      .|+|++|.|+||+++++|||||+|+.||||+|+++||++||+|||+++|+||++++++++++++++||+|+|+|++||+.
T Consensus       302 ~ydltvd~L~~~ad~~~F~rFd~Fn~kynp~g~~~LreiFlktdn~i~~e~l~ri~~evled~a~dgV~Y~ElR~sp~~~  381 (701)
T 2a3l_A          302 GYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGR  381 (701)
T ss_dssp             STTCCSTTCCCCSCSSCCCCCSSSHHHHCCSSCCHHHHHHSCSSSTTTTTTHHHHHHHHHHHHTTSSSEEEEEEEECCSS
T ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             20023100243344110322100133368066899999998725632179999999999999997598599998225668


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEE
Q ss_conf             63328999999995023678638999822776301343299999999998202323224699993356641044000463
Q 002625          580 KQSEWDQLASWFINNEIYSENAIWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDL  659 (899)
Q Consensus       580 ~~~ew~~la~wi~~~~l~s~nVRwiIqIpR~y~~~~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl~~VVGiDL  659 (899)
                      ...+|+.+++|+.++...++++||++|++|.++++.+.+.+.+|+++|+|||.|||++|++|++++.|+.|+++|||||+
T Consensus       382 ~~~~~~~l~~~v~~~~~~~~~vr~ii~i~R~~~~~~a~~~v~~F~~~l~nIF~PL~e~t~~p~~~~~l~~~~~~VvGfDL  461 (701)
T 2a3l_A          382 KMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDL  461 (701)
T ss_dssp             SSTHHHHHHHHHHTTTCCCSSEEEEEEEECCHHHHTTSSSCSSTHHHHHHHSSHHHHHHHCGGGSTTTHHHHTTEEEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEE
T ss_conf             88769999999996675675358999962456877762857789999986506778764484337999966897799983


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf             03899999999889999835101016741145688887656479999975999877445458999963799960379820
Q 002625          660 VDDESKPERRPTKHMPKPAEWTNEFNPAYSYYTYYFYANLYTLNKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNI  739 (899)
Q Consensus       660 vgdEs~~e~~~~~~~~~P~~w~~~fnpaysYy~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEag~~e~L~~AlL~adRI  739 (899)
                      +|+|++++..++.+.++|..|+..|+|+|.||+|||||||.+||.+|+++|+|+|++++||||+++++++.+++|+++||
T Consensus       462 ~G~E~~~~~~~~~~~~pp~~~~~~f~p~~~yy~Yy~yan~~~Ln~ar~~~Gl~~i~~t~HaGE~~~~e~l~~alLg~~RI  541 (701)
T 2a3l_A          462 VDDESKPERRPTKHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAATFLTCHSI  541 (701)
T ss_dssp             ESCTTSCCCCCCSSCCCTTTCCSSSCCCHHHHHHHHHHHHHHHHHHHTTTTCCCCEECCCCSSSSCTHHHHHHHHHCSSC
T ss_pred             ECCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEE
T ss_conf             04777654454335799677031136278889899898789999999976998777110338999999999983599868


Q ss_pred             CCCEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             22000556779999999839938890645500012578885589986499299869997573568105899999999985
Q 002625          740 SHGIHLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVW  819 (899)
Q Consensus       740 gHGi~L~kdP~L~yL~~l~qI~IevCPlSN~~L~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~  819 (899)
                      |||+.+.++|.|+++++++||+||+||+||+.++.++.+||++.|+++|++|+||||||++|++|+.+|++||..|++.|
T Consensus       542 gHGv~l~edp~Li~lla~~~I~vevCP~SN~kl~~~~~~HPi~~ll~~Gv~VsLgTDdp~~~~~t~~dL~~Ey~~aa~~~  621 (701)
T 2a3l_A          542 AHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASVW  621 (701)
T ss_dssp             SCCGGGGGCHHHHHHHHHHTCCEEECHHHHTTTTCCSTTCSHHHHHHTTCCEEECCBCHHHHCCSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHCCCCEEECCCCHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             88756466899999999729967887652002126732769999997799099818984202799867999999999983


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999999999999999089999999998311210299999831037772699999999999999998147767776679
Q 002625          820 KLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGPGGNDIHKTNVPNIRIEFRHETWKEEMQYVYLGRAIIPVEIDT  899 (899)
Q Consensus       820 ~LS~~DL~ELArNSV~~Sff~~e~K~~wlg~~~~~~g~~gnd~~ktnVp~iR~~~R~etl~~El~~i~~~~~~~~~~~~~  899 (899)
                      +|+..|+++|++||+.+||+++++|++|++..|.+.|++|||+++||||+||++||+|||++||++|+.|..++|++|+.
T Consensus       622 ~ls~~dl~~la~Ns~~asfl~~~~K~~ll~~~~~~~g~~gn~~~~tnvp~~R~~~R~e~l~~E~~~~~~~~~~~~~~~~~  701 (701)
T 2a3l_A          622 KLSACDLCEIARNSVYQSGFSHALKSHWIGKDYYKRGPDGNDIHKTNVPHIRVEFRDTIWKEEMQQVYLGKAVISDEVVP  701 (701)
T ss_dssp             TCCHHHHHHHHHHHHHHSCCCHHHHHHHSCTTTTBSSGGGCCHHHHCSCHHHHHHHHHHHHHHHHHHTTTCCCCCSBCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
T ss_conf             99999999999999999589999999999888874488778843138977999999999999999999654227141069


No 2  
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=1.00  E-value=1  Score=445.44  Aligned_cols=315  Identities=18%  Similarity=0.249  Sum_probs=249.0

Q ss_pred             CCCCCC-CCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             623236-6765540423798898999999999841399956980389414799999752788766750000003455333
Q 002625          439 HRDFYN-IRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKSTF  517 (899)
Q Consensus       439 ~rDFyn-~pKVDlHvHLsGcm~~k~LlefIk~K~~~~p~~vV~~~~Gk~~TL~eiF~~l~l~~~dLtvd~L~~~ad~~~f  517 (899)
                      .|+|+. .||||||+||+||+++++|++++++.....|..          ++.+++....-                   
T Consensus        22 ~~~Fi~~LPKvELH~HLdGsl~p~tl~~LA~~~g~~l~~~----------~~~~~~~~~~~-------------------   72 (380)
T 4gxw_A           22 HRAFFHALPKVELHCHLLGAVRHDTFVALAQRSGAPIERA----------EIDAFYARGEK-------------------   72 (380)
T ss_dssp             HHHHHHHSCEEECCBBGGGCCCHHHHHHHHHHHTCSCCTT----------HHHHHHCCCSS-------------------
T ss_pred             HHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC----------CHHHHHHHHHC-------------------
T ss_conf             9999995826776608757979999999999818897801----------49999976421-------------------


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC-C--CHHH----HHHH
Q ss_conf             2011011347987434689998420357858999999999999999879538999971455663-3--2899----9999
Q 002625          518 HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQ-S--EWDQ----LASW  590 (899)
Q Consensus       518 hrfD~F~~kynP~g~~~Lr~iFL~tdn~i~geyLaeitkeviedle~~~vqyaElR~spyg~~~-~--ew~~----la~w  590 (899)
                                 +.+...+.. ++...++.+.++|++++++++++++++||+|+|+|++|+.+.. .  .++.    +.++
T Consensus        73 -----------~~~~~~~~~-~~~~~vl~t~ed~~r~a~e~~ed~a~dgV~Y~Eirf~P~~~~~~~Gl~~~~vv~av~~g  140 (380)
T 4gxw_A           73 -----------PVGVLHVLR-ALDRYLLTRPDDLRRIAYEYLEDAAAHNVRHAEFFWNPTGTVRVSGIPYADAQAAIVTG  140 (380)
T ss_dssp             -----------CCCSHHHHH-HHHHHTCCSHHHHHHHHHHHHHHHHTTTEEEEEEEECHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             -----------CCCHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             -----------012899999-99999849999999999999999998798699987078886202599899999999999


Q ss_pred             HHH-HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCC
Q ss_conf             995-0236786389998227763013432999999999982023232246999933566410440004630389999999
Q 002625          591 FIN-NEIYSENAIWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERR  669 (899)
Q Consensus       591 i~~-~~l~s~nVRwiIqIpR~y~~~~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl~~VVGiDLvgdEs~~e~~  669 (899)
                      +.+ .+.+++.+|||+|+.|..++..+..++       +.+.                ....+.||||||+|+|.+    
T Consensus       141 ~~~a~~~~gi~~rlI~~~~R~~~~e~a~~~~-------~~a~----------------~~~~~~VvG~dL~g~E~~----  193 (380)
T 4gxw_A          141 MRDAARDFGIGARLIPSIDREQDPDEAVAIV-------DWMK----------------ANRADEVAGIGIDYREND----  193 (380)
T ss_dssp             HHHHHHHHCCEEEEEEEEETTSCHHHHHHHH-------HHHH----------------HTCCTTBCEEEEESCCTT----
T ss_pred             HHHHHHHCCCCEEEEEEECCCCCHHHHHHHH-------HHHH----------------HHCCCCEEEEEECCCCCC----
T ss_conf             9987774697389987546789999999999-------9999----------------747997799960588778----


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-HHHHHHHC--CCCCCCCCCEECC
Q ss_conf             98899998351010167411456888876564799999759998774454589999-63799960--3798202200055
Q 002625          670 PTKHMPKPAEWTNEFNPAYSYYTYYFYANLYTLNKLRESKGMPTIKLRPHCGEAGE-IDHLAAAF--LLCNNISHGIHLR  746 (899)
Q Consensus       670 ~~~~~~~P~~w~~~fnpaysYy~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEag~-~e~L~~Al--L~adRIgHGi~L~  746 (899)
                           .||..|...|..                  +| +.|+   ++|+||||.++ .+++++|+  |+++|||||+.+.
T Consensus       194 -----~p~~~f~~~f~~------------------ar-~~Gl---~~t~HAGE~~~p~~~i~~al~~lga~RIgHG~~~~  246 (380)
T 4gxw_A          194 -----RPPELFWKAYRD------------------AR-AAGF---RTTAHAGEFGMPWRNVETAVDLLHVDRVDHGYTIV  246 (380)
T ss_dssp             -----CCGGGGHHHHHH------------------HH-HTTC---EEEEEESCTTCCHHHHHHHHHTSCCSEEEECGGGG
T ss_pred             -----CCHHHHHHHHHH------------------HH-HCCC---CEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf             -----998999999999------------------99-7599---74653435478367899999970876254520001


Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCCCC--CCC---CCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             67799999998399388906455000--125---7888558998649929986999757356810589999999998599
Q 002625          747 KSPVLQYLYYLAQIGLAMSPLSNNSL--FLD---YHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKL  821 (899)
Q Consensus       747 kdP~L~yL~~l~qI~IevCPlSN~~L--~~~---y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~~L  821 (899)
                      ++|.|+.+++.++|+|||||+||+.|  +.+   +.+||++.|++.|++|+||||||++|++|   |++||..+++.|+|
T Consensus       247 ~d~~L~~~l~~~~I~lEvCP~SN~~l~~v~~~~~~~~HP~~~l~~~Gv~vtinTDDp~~f~t~---Ls~Ey~~~~~~~gl  323 (380)
T 4gxw_A          247 DNPELCARYAERGIVFTVVPTNSYYLRTLPPDQWAERHPMRKMPGLGLKIHPNTDDPTLHKVN---PSEAWELMFSHFGF  323 (380)
T ss_dssp             GCHHHHHHHHHHTCEEEECTTCHHHHHHSCTTTHHHHCGGGGTGGGTCEEEECCBSHHHHTCC---HHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCHHHCCC---HHHHHHHHHHHHCC
T ss_conf             275789999980965677876403313546512100383999997899699878981432878---89999999998095


Q ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHCH
Q ss_conf             999999999999999089999999998311
Q 002625          822 SSCDLCEIARNSVYQSGFSHMAKSHWLGNK  851 (899)
Q Consensus       822 S~~DL~ELArNSV~~Sff~~e~K~~wlg~~  851 (899)
                      +..||++|++||+.+||+++++|+.|+...
T Consensus       324 s~~dl~~l~~nsi~~sF~~~~~K~~l~~~~  353 (380)
T 4gxw_A          324 TIADLKQFMLNGIDGAWVDDDTKAAWRAAW  353 (380)
T ss_dssp             CHHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999999999999999869999999999999


No 3  
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=1.00  E-value=1  Score=417.90  Aligned_cols=319  Identities=18%  Similarity=0.208  Sum_probs=251.3

Q ss_pred             CCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf             23667655404237988989999999998413999569803894147999997527887-66750000003455333201
Q 002625          442 FYNIRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTG-YDLNVDLLDVHADKSTFHRF  520 (899)
Q Consensus       442 Fyn~pKVDlHvHLsGcm~~k~LlefIk~K~~~~p~~vV~~~~Gk~~TL~eiF~~l~l~~-~dLtvd~L~~~ad~~~fhrf  520 (899)
                      ..+.||||||+||+||+++++++++++++....|..          +..++-+.+.... .+|. ++|            
T Consensus         3 ~~~lPK~ELH~HL~Gsl~p~tl~~La~~~~~~lp~~----------~~~~l~~~~~~~~~~~L~-~fl------------   59 (367)
T 3iar_A            3 AFDKPKVELHVHLDGSIKPETILYYGRRRGIALPAN----------TAEGLLNVIGMDKPLTLP-DFL------------   59 (367)
T ss_dssp             CCCSCEEECCBBGGGSCCHHHHHHHHHHHTCCCSCS----------SHHHHHHHHCCSSCCCHH-HHH------------
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCC----------CHHHHHHHHCCCCCCCHH-HHH------------
T ss_conf             788970576645547879999999998649999967----------989998781167889999-999------------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--------------CHH
Q ss_conf             10113479874346899984203578-589999999999999998795389999714556633--------------289
Q 002625          521 DKFNLKYNPCGQSRLREIFLKQDNLI-QGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQS--------------EWD  585 (899)
Q Consensus       521 D~F~~kynP~g~~~Lr~iFL~tdn~i-~geyLaeitkeviedle~~~vqyaElR~spyg~~~~--------------ew~  585 (899)
                      +.|.               ....++. +.++|++++++++++++++||+|+|+|++|+.+...              .++
T Consensus        60 ~~f~---------------~~~~vl~~~~edl~~~a~e~~ed~a~dgV~Y~Eir~~P~~~~~~~~~~~~~~~~~~gl~~~  124 (367)
T 3iar_A           60 AKFD---------------YYMPAIAGCREAIKRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPD  124 (367)
T ss_dssp             GGGG---------------GTHHHHTTCHHHHHHHHHHHHHHHHTTTEEEEEEEECGGGGCSSSCSSCGGGCCCCSCCHH
T ss_pred             HHHH---------------HHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             9999---------------9999980999999999999999999869879999816888611124565444566898999


Q ss_pred             H----HHHHHHH-HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCCCEEEE
Q ss_conf             9----9999995-023678638999822776301343299999999998202323224699993356641-044000463
Q 002625          586 Q----LASWFIN-NEIYSENAIWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVF-LLMVVGFDL  659 (899)
Q Consensus       586 ~----la~wi~~-~~l~s~nVRwiIqIpR~y~~~~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~f-l~~VVGiDL  659 (899)
                      .    +.+++.+ .+.+++.+|||+|+.|+.+. .+.+       +++.+-                 .| .+.|||||+
T Consensus       125 ~vv~~v~~~~~~a~~~~gi~~~lI~~~~R~~~~-~a~e-------~~~la~-----------------~~~~~~vvG~dL  179 (367)
T 3iar_A          125 EVVALVGQGLQEGERDFGVKARSILCCMRHQPN-WSPK-------VVELCK-----------------KYQQQTVVAIDL  179 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEEEETTCGG-GHHH-------HHHHHH-----------------HTTTTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCH-HHHH-------HHHHHH-----------------HHCCCCEEEECC
T ss_conf             999999999998777549759999985789989-9999-------999998-----------------638898899717


Q ss_pred             CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHC--C
Q ss_conf             038999999998899998---35101016741145688887656479999975999877445458999963799960--3
Q 002625          660 VDDESKPERRPTKHMPKP---AEWTNEFNPAYSYYTYYFYANLYTLNKLRESKGMPTIKLRPHCGEAGEIDHLAAAF--L  734 (899)
Q Consensus       660 vgdEs~~e~~~~~~~~~P---~~w~~~fnpaysYy~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEag~~e~L~~Al--L  734 (899)
                      +|+|...         +|   ..|...|                  ..+| +.|+   ++++||||+++++++.+++  |
T Consensus       180 ~g~E~~~---------~~~~~~~f~~~f------------------~~A~-~~gl---~~~~HagE~~~~~~i~~al~~l  228 (367)
T 3iar_A          180 AGDETIP---------GSSLLPGHVQAY------------------QEAV-KSGI---HRTVHAGEVGSAEVVKEAVDIL  228 (367)
T ss_dssp             ESCTTST---------TGGGCHHHHHHH------------------HHHH-HHTC---EEEEEESSSSCHHHHHHHHHTS
T ss_pred             CCCCCCC---------CCCHHHHHHHHH------------------HHHH-HCCC---EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8765679---------832199999999------------------9999-8599---0577447769868999999736


Q ss_pred             CCCCCCCCEECCCCHHHHHHHHHCCCCEEEECCCCCCC--CCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHH
Q ss_conf             79820220005567799999998399388906455000--1257888558998649929986999757356810589999
Q 002625          735 LCNNISHGIHLRKSPVLQYLYYLAQIGLAMSPLSNNSL--FLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEY  812 (899)
Q Consensus       735 ~adRIgHGi~L~kdP~L~yL~~l~qI~IevCPlSN~~L--~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEY  812 (899)
                      +++|||||+.+.++|.++.+++.++|++++||+||..+  +.++..||++.|+++|++|+||||||++|+++   |++||
T Consensus       229 g~~RIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~v~l~TDdp~~~~~~---l~~e~  305 (367)
T 3iar_A          229 KTERLGHGYHTLEDQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFKST---LDTDY  305 (367)
T ss_dssp             CCSEEEECGGGGGCHHHHHHHHHTTCEEEECHHHHHHTSSSCTTSCCHHHHHHHTTCCEEECCBSHHHHTCC---HHHHH
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCC---HHHHH
T ss_conf             975564444314898999999967947998978899858878746472999997899799779996456998---99999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHCCC
Q ss_conf             999998599999999999999999089999999998311210299
Q 002625          813 SVAAKVWKLSSCDLCEIARNSVYQSGFSHMAKSHWLGNKYFIRGP  857 (899)
Q Consensus       813 siAaq~~~LS~~DL~ELArNSV~~Sff~~e~K~~wlg~~~~~~g~  857 (899)
                      ..+++.|+|+..++++|++||+.+||+++++|+.|+.......+.
T Consensus       306 ~~a~~~~glt~~el~~l~~nsi~~sf~~~~~K~~l~~~~~~~~~~  350 (367)
T 3iar_A          306 QMTKRDMGFTEEEFKRLNINAAKSSFLPEDEKRELLDLLYKAYGM  350 (367)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf             999998198999999999999999689999999999999998644


No 4  
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=1.00  E-value=1  Score=413.62  Aligned_cols=312  Identities=20%  Similarity=0.268  Sum_probs=253.4

Q ss_pred             CCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             36676554042379889899999999984139995698038941479999975278876675000000345533320110
Q 002625          443 YNIRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDK  522 (899)
Q Consensus       443 yn~pKVDlHvHLsGcm~~k~LlefIk~K~~~~p~~vV~~~~Gk~~TL~eiF~~l~l~~~dLtvd~L~~~ad~~~fhrfD~  522 (899)
                      -+.||||||+||+||+++++|+++++++....|..          +..++-+.+..  .+|                   
T Consensus        11 ~~lPK~ELH~Hl~Gsl~p~tl~~la~~~~~~lp~~----------~~~~l~~~~~~--~~l-------------------   59 (343)
T 3rys_A           11 TAPPVAELHLHIEGTLQPELIFALAERNGIELPYE----------DIEELREKYEF--TDL-------------------   59 (343)
T ss_dssp             SCCCEEECSBBGGGGCCHHHHHHHHHHTTCCCSCS----------SHHHHHTTCCC--SSH-------------------
T ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCC----------CHHHHHHHCCC--CCH-------------------
T ss_conf             51971156746706879999999998669999999----------99999976588--889-------------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--HHH----HHHHHHH-HC
Q ss_conf             1134798743468999842035785899999999999999987953899997145566332--899----9999995-02
Q 002625          523 FNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSE--WDQ----LASWFIN-NE  595 (899)
Q Consensus       523 F~~kynP~g~~~Lr~iFL~tdn~i~geyLaeitkeviedle~~~vqyaElR~spyg~~~~e--w~~----la~wi~~-~~  595 (899)
                               +..|..+......+.+.++|++++++++++++++||+|+|+|++|+.+...+  ++.    +.+++.+ .+
T Consensus        60 ---------~~fl~~f~~~~~vl~~~e~~~~~~~~~l~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~a~~  130 (343)
T 3rys_A           60 ---------QSFLDLYYANMAVLQTEQDFTDMTRAYLERAAAGGVRHAEIMMDPQAHTSRGVALETCVNGVANALATSEE  130 (343)
T ss_dssp             ---------HHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHTTTCCHHHHHHHHHHHHTTHHH
T ss_pred             ---------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             ---------99999999999885899999999999999999779989999826777532898999999999999999864


Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             36786389998227763013432999999999982023232246999933566410440004630389999999988999
Q 002625          596 IYSENAIWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMP  675 (899)
Q Consensus       596 l~s~nVRwiIqIpR~y~~~~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl~~VVGiDLvgdEs~~e~~~~~~~~  675 (899)
                      .+++.+|||+|+.|..++..+.+.+       +.+.                 .|.+.|+|||++|+|..         .
T Consensus       131 ~~gi~~~lI~~~~R~~~~~~a~~~l-------~~a~-----------------~~~~~vvG~dL~g~E~~---------~  177 (343)
T 3rys_A          131 DFGVSTLLIAAFLRDMSEDSALEVL-------DQLL-----------------AMHAPIAGIGLDSAEVG---------N  177 (343)
T ss_dssp             HHSCEEEEEEEEETTSCHHHHHHHH-------HHHH-----------------HTTCCCCEEEEESCCTT---------C
T ss_pred             CCCEEEEEEEEECCCCCHHHHHHHH-------HHHH-----------------HCCCCEEEEECCCCCCC---------C
T ss_conf             2752699999967999989999999-------9998-----------------57998799835885667---------8


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHC--CCCCCCCCCEECCCCHHHHH
Q ss_conf             9835101016741145688887656479999975999877445458999963799960--37982022000556779999
Q 002625          676 KPAEWTNEFNPAYSYYTYYFYANLYTLNKLRESKGMPTIKLRPHCGEAGEIDHLAAAF--LLCNNISHGIHLRKSPVLQY  753 (899)
Q Consensus       676 ~P~~w~~~fnpaysYy~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEag~~e~L~~Al--L~adRIgHGi~L~kdP~L~y  753 (899)
                      +|..|...|..                  +| +.|+   ++++||||+++++++.+++  |+++|||||+.+.++|.++.
T Consensus       178 ~~~~~~~~~~~------------------A~-~~gl---~~~~HagE~~~~~~i~~al~~lg~~rIgHgv~l~~d~~l~~  235 (343)
T 3rys_A          178 PPSKFERLYQR------------------AA-EAGL---RRIAHAGEEGPASYITEALDVLHVERIDHGIRCMEDTDVVQ  235 (343)
T ss_dssp             CGGGGHHHHHH------------------HH-HTTC---EEEEEESSSSCHHHHHHHHHTSCCSEEEECGGGGGCHHHHH
T ss_pred             CHHHHHHHHHH------------------HH-HCCC---EEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHH
T ss_conf             89999999999------------------99-7799---07985289898789999985578622420444357767999


Q ss_pred             HHHHCCCCEEEECCCCCCC--CCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             9998399388906455000--12578885589986499299869997573568105899999999985999999999999
Q 002625          754 LYYLAQIGLAMSPLSNNSL--FLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCEIAR  831 (899)
Q Consensus       754 L~~l~qI~IevCPlSN~~L--~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~~LS~~DL~ELAr  831 (899)
                      +++.++|++++||+||..|  +.++..||++.|+++|++|+||||||++|++   +|++||..|++.|+|+..++++|++
T Consensus       236 ~l~~~~i~le~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~V~l~TDdp~~~~~---~l~~E~~~a~~~~~l~~~~l~~l~~  312 (343)
T 3rys_A          236 RLVAEQVPLTVCPLSNVRLRAVDKLADHPLPEMLAIGLNVCVNSDDPAYFGG---YVDDNFEQLVKVLEFSVPEQATLAA  312 (343)
T ss_dssp             HHHHHTCCEEECHHHHHHTTSSSCGGGCSHHHHHHTTCCEEECCBSTTTTTC---CHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHCCCCEEECHHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCC---CHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9995499766765689996788886636599999879969992899412499---9999999999983989999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHCHH
Q ss_conf             999990899999999983112
Q 002625          832 NSVYQSGFSHMAKSHWLGNKY  852 (899)
Q Consensus       832 NSV~~Sff~~e~K~~wlg~~~  852 (899)
                      ||+.+||+++++|+.|+....
T Consensus       313 nsi~~sf~~~~~K~~l~~~~~  333 (343)
T 3rys_A          313 NSIRSSFASDARKAVLLDEVT  333 (343)
T ss_dssp             HHHHHSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
T ss_conf             999997799999999999999


No 5  
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=1.00  E-value=1  Score=397.91  Aligned_cols=305  Identities=18%  Similarity=0.245  Sum_probs=246.8

Q ss_pred             CCCC-CCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3236-676554042379889899999999984139995698038941479999975278876675000000345533320
Q 002625          441 DFYN-IRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKSTFHR  519 (899)
Q Consensus       441 DFyn-~pKVDlHvHLsGcm~~k~LlefIk~K~~~~p~~vV~~~~Gk~~TL~eiF~~l~l~~~dLtvd~L~~~ad~~~fhr  519 (899)
                      +|+. .||||||+||+||+++++|+++++++....|..          +..++-......  +|                
T Consensus         5 ~~~~~lPK~ELH~Hl~Gsl~~~t~~~la~~~~~~lp~~----------~~~~l~~~~~~~--~l----------------   56 (326)
T 3pao_A            5 EWLNALPKAELHLHLEGTLEPELLFALAERNRIALPWN----------DVETLRKAYAFN--NL----------------   56 (326)
T ss_dssp             HHHHHSCEEECSBBGGGGCCHHHHHHHHHHTTCCCSSS----------SHHHHHHTCCCS--SH----------------
T ss_pred             HHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCC----------CHHHHHHHCCCC--CH----------------
T ss_conf             99872880278746527879999999998669999988----------989997524778--89----------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--HHH----HHHHHHH
Q ss_conf             1101134798743468999842035785899999999999999987953899997145566332--899----9999995
Q 002625          520 FDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSE--WDQ----LASWFIN  593 (899)
Q Consensus       520 fD~F~~kynP~g~~~Lr~iFL~tdn~i~geyLaeitkeviedle~~~vqyaElR~spyg~~~~e--w~~----la~wi~~  593 (899)
                                  +..|..++....++.+.++|++++++++++++++||+|+|+|++|+.+...+  ++.    +.+++.+
T Consensus        57 ------------~~fl~~~~~~~~vl~t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~~~gl~~~~~v~~v~~~~~~  124 (326)
T 3pao_A           57 ------------QEFLDLYYAGADVLRTEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHTDRGIPFEVVLAGIRAALRD  124 (326)
T ss_dssp             ------------HHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             ------------99999999999884899999999999999999739849999977677501799999999999999999


Q ss_pred             -HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             -0236786389998227763013432999999999982023232246999933566410440004630389999999988
Q 002625          594 -NEIYSENAIWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTK  672 (899)
Q Consensus       594 -~~l~s~nVRwiIqIpR~y~~~~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl~~VVGiDLvgdEs~~e~~~~~  672 (899)
                       .+.+++.+|||+|+.|..++..+.+.       ++.+.                 .|.+.|+|||++|+|..       
T Consensus       125 a~~~~gi~~~lI~~~~R~~~~~~a~~~-------~~~a~-----------------~~~~~vvG~dL~g~E~~-------  173 (326)
T 3pao_A          125 GEKLLGIRHGLILSFLRHLSEEQAQKT-------LDQAL-----------------PFRDAFIAVGLDSSEVG-------  173 (326)
T ss_dssp             HHHHHCCEECCEEEEETTSCHHHHHHH-------HHHHG-----------------GGGGGCSEEEEESCCTT-------
T ss_pred             HHHHCCEEEEEEEEECCCCCHHHHHHH-------HHHHH-----------------HCCCCCEEECCCCCCCC-------
T ss_conf             875075479999995789999999999-------99876-----------------45243266687788778-------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHC--CCCCCCCCCEECCCCHH
Q ss_conf             9999835101016741145688887656479999975999877445458999963799960--37982022000556779
Q 002625          673 HMPKPAEWTNEFNPAYSYYTYYFYANLYTLNKLRESKGMPTIKLRPHCGEAGEIDHLAAAF--LLCNNISHGIHLRKSPV  750 (899)
Q Consensus       673 ~~~~P~~w~~~fnpaysYy~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEag~~e~L~~Al--L~adRIgHGi~L~kdP~  750 (899)
                        .+|..|...|..                  +| +.|+   ++++||||+++++++.+++  |+++|||||+.+.++|.
T Consensus       174 --~~~~~~~~~~~~------------------A~-~~gl---~~~~HagE~~~~~~i~~al~~lg~~rigHgv~l~~d~~  229 (326)
T 3pao_A          174 --HPPSKFQRVFDR------------------AR-SEGF---LTVAHAGEEGPPEYIWEALDLLKVERIDHGVRAFEDER  229 (326)
T ss_dssp             --CCGGGGHHHHHH------------------HH-HTTC---EECEEESSSSCHHHHHHHHHTTCCSSEEECGGGGGCHH
T ss_pred             --CCHHHHHHHHHH------------------HH-HCCC---CEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCHH
T ss_conf             --889999999999------------------99-8699---45661488898789999986479735634444246578


Q ss_pred             HHHHHHHCCCCEEEECCCCCCC--CCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             9999998399388906455000--12578885589986499299869997573568105899999999985999999999
Q 002625          751 LQYLYYLAQIGLAMSPLSNNSL--FLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDLCE  828 (899)
Q Consensus       751 L~yL~~l~qI~IevCPlSN~~L--~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~~LS~~DL~E  828 (899)
                      ++.+++.++|++++||+||..+  +.++..||++.|+++|++|+||||||++|++   +|++||..|++.|+|+..++++
T Consensus       230 l~~~l~~~~i~le~cP~SN~~l~~~~~~~~hPi~~ll~~Gv~V~l~TDdp~~~~~---~l~~e~~~a~~~~~l~~~~l~~  306 (326)
T 3pao_A          230 LMRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSDDPAYFGG---YVTENFHALQQSLGMTEEQARR  306 (326)
T ss_dssp             HHHHHHHHTCCEEECHHHHHHTTSSSSGGGCCHHHHHHHTCCEEECCBSHHHHTC---CHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCC---CHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9999997498189991548985788875537599999789969993899635798---9999999999981989999999


Q ss_pred             HHHHHHHHHCCCHHH
Q ss_conf             999999990899999
Q 002625          829 IARNSVYQSGFSHMA  843 (899)
Q Consensus       829 LArNSV~~Sff~~e~  843 (899)
                      |++||+.+||+++.-
T Consensus       307 l~~nsi~~sf~~~~~  321 (326)
T 3pao_A          307 LAQNSLDARLVKEGH  321 (326)
T ss_dssp             HHHHHHHTCC-----
T ss_pred             HHHHHHHHHHHCCCC
T ss_conf             999999999725653


No 6  
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Probab=1.00  E-value=1  Score=362.76  Aligned_cols=268  Identities=17%  Similarity=0.161  Sum_probs=214.5

Q ss_pred             HHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC--CCCCC-CC--CHH----HHHHHHHH-HCCCC--CCE
Q ss_conf             89998-420357858999999999999999879538999971--45566-33--289----99999995-02367--863
Q 002625          535 LREIF-LKQDNLIQGRFLAEVTKQVLLDLEASKYQMAEYRVS--IYGRK-QS--EWD----QLASWFIN-NEIYS--ENA  601 (899)
Q Consensus       535 Lr~iF-L~tdn~i~geyLaeitkeviedle~~~vqyaElR~s--pyg~~-~~--ew~----~la~wi~~-~~l~s--~nV  601 (899)
                      +..+| .....+...++|++++++++++++++||+|+|+|++  |.... ..  ..+    .+.+++.+ .+.++  +.+
T Consensus       181 F~~~f~~~~~ll~~~~~~~~~~~e~l~d~a~dgV~Y~ElR~~f~p~~~~~g~~l~~~~vv~~v~~~~~~~~~~~~~fI~~  260 (508)
T 3lgd_A          181 FETIFFTISGLIHYAPVFRDYVFRSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGI  260 (508)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCCBCTTSCBCCHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99999999999569999999999999999976965999860576676216899999999999999999999866994599


Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89998227763013432999999999982023232246999933566410440004630389999999988999983510
Q 002625          602 IWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMPKPAEWT  681 (899)
Q Consensus       602 RwiIqIpR~y~~~~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl~~VVGiDLvgdEs~~e~~~~~~~~~P~~w~  681 (899)
                      |+|+|+.|..+...+.++++...++-+                    .+.+.||||||+|+|..+        .||..|.
T Consensus       261 rlI~~~~R~~~~e~a~e~l~~a~~~~~--------------------~~~~~VvG~DLaG~E~~g--------~p~~~f~  312 (508)
T 3lgd_A          261 KIIYSDHRSKDVAVIAESIRMAMGLRI--------------------KFPTVVAGFDLVGHEDTG--------HSLHDYK  312 (508)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHH--------------------HCTTTEEEEEEESCTTTS--------CCTGGGH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHH--------------------HCCCCEEEECCCCCCCCC--------CCHHHHH
T ss_conf             999994689999999999999999886--------------------378856872167887789--------8999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----HHHHHHHC-CCCCCCCCCEECCCCHHHHHHH
Q ss_conf             10167411456888876564799999759998774454589999-----63799960-3798202200055677999999
Q 002625          682 NEFNPAYSYYTYYFYANLYTLNKLRESKGMPTIKLRPHCGEAGE-----IDHLAAAF-LLCNNISHGIHLRKSPVLQYLY  755 (899)
Q Consensus       682 ~~fnpaysYy~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEag~-----~e~L~~Al-L~adRIgHGi~L~kdP~L~yL~  755 (899)
                      ..|..+                ++| +.|+   ++++||||+++     ++++.+|+ |+++|||||+.+.++|.+++++
T Consensus       313 ~~f~~~----------------~A~-~~gl---~~t~HAGE~~~~g~~~~~~i~~Al~Lga~RIgHGv~l~~dp~l~~~l  372 (508)
T 3lgd_A          313 EALMIP----------------AKD-GVKL---PYFFHAGETDWQGTSIDRNILDALMLNTTRIGHGFALSKHPAVRTYS  372 (508)
T ss_dssp             HHHTHH----------------HHT-TCCC---CBCCEECCSSCCSSTTTTHHHHHHHTTCSSEEECTTGGGCHHHHHHH
T ss_pred             HHHHHH----------------HHH-HCCC---CEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH
T ss_conf             999998----------------898-7698---04642212357888848999999864876451047517669999999


Q ss_pred             HHCCCCEEEECCCCCCC--CCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC---CHHHHHHHH
Q ss_conf             98399388906455000--1257888558998649929986999757356810589999999998599---999999999
Q 002625          756 YLAQIGLAMSPLSNNSL--FLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKL---SSCDLCEIA  830 (899)
Q Consensus       756 ~l~qI~IevCPlSN~~L--~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~~L---S~~DL~ELA  830 (899)
                      +.++|+||+||+||+.|  +.++..||++.|+++|++|+||||||++|++|  +|++||..|++.|++   +..+|++|+
T Consensus       373 ~~~~I~levCP~SN~~l~~v~~~~~hP~~~ll~~Gv~V~l~TDdp~~f~~~--~Ls~Ey~~a~~~~~~~~~~~~~l~~La  450 (508)
T 3lgd_A          373 WKKDIPIEVCPISNQVLKLVSDLRNHPVATLMATGHPMVISSDDPAMFGAK--GLSYDFYEVFMGIGGMKADLRTLKQLA  450 (508)
T ss_dssp             HHTTCCEEECHHHHHHTTSCSSGGGCTHHHHHHTTCCEEECCBSHHHHTCC--TTHHHHHHHHHTTSCTTCCHHHHHHHH
T ss_pred             HHCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCC--CHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             962985787755189867788765485999997799578758993001897--559999999987066789999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHCHH
Q ss_conf             9999990899999999983112
Q 002625          831 RNSVYQSGFSHMAKSHWLGNKY  852 (899)
Q Consensus       831 rNSV~~Sff~~e~K~~wlg~~~  852 (899)
                      +||+.+||+++++|+.|+....
T Consensus       451 ~NSi~~Sfl~~~eK~~ll~~~~  472 (508)
T 3lgd_A          451 MNSIKYSTLLESEKNTFMEIWK  472 (508)
T ss_dssp             HHHHHTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999997799999999999999


No 7  
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=1.00  E-value=1  Score=355.57  Aligned_cols=311  Identities=18%  Similarity=0.204  Sum_probs=239.5

Q ss_pred             CCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66765540423798898999999999841399956980389414799999752788766750000003455333201101
Q 002625          444 NIRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKF  523 (899)
Q Consensus       444 n~pKVDlHvHLsGcm~~k~LlefIk~K~~~~p~~vV~~~~Gk~~TL~eiF~~l~l~~~dLtvd~L~~~ad~~~fhrfD~F  523 (899)
                      +.||||+|+||+||+++++|+++++++... |..          +..++.+.+... ++              +..++. 
T Consensus        43 ~lPK~eLH~Hl~gsl~~~~l~~la~~~~~~-p~~----------~~~~l~~~~~~~-~~--------------~~~L~~-   95 (371)
T 2pgf_A           43 RIPKCELHCHLDLCFSADFFVSCIRKYNLQ-PNL----------SDEEVLDYYLFA-KG--------------GKSLGE-   95 (371)
T ss_dssp             HSCEEEEEEEGGGCCCHHHHHHHHHHTTCC-TTS----------CHHHHHHHHCCT-TC--------------CSCHHH-
T ss_pred             HCCHHHHEECCCCCCCHHHHHHHHHHCCCC-CCC----------CHHHHHHHHHCC-CC--------------CCCHHH-
T ss_conf             485766115774687999999999874999-877----------889999997514-68--------------778999-


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCC--CHHH----HHHHHHH-HC
Q ss_conf             1347987434689998420357858999999999999999879538999971455-6633--2899----9999995-02
Q 002625          524 NLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYG-RKQS--EWDQ----LASWFIN-NE  595 (899)
Q Consensus       524 ~~kynP~g~~~Lr~iFL~tdn~i~geyLaeitkeviedle~~~vqyaElR~spyg-~~~~--ew~~----la~wi~~-~~  595 (899)
                                .|..+......+.+.++++++++++++++.++||+|+|+|++|+. +...  .++.    +.+++.+ .+
T Consensus        96 ----------~l~~~~~~~~~~~t~ed~~~~a~~~l~e~~~~GV~y~E~r~dp~~~~~~~gl~~~~~~~a~~~~~~~a~~  165 (371)
T 2pgf_A           96 ----------FVEKAIKVADIFHDYEVIEDLAKHAVFNKYKEGVVLMEFRYSPTFVAFKYNLDIELIHQAIVKGIKEVVE  165 (371)
T ss_dssp             ----------HHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHTEEEEEEEECHHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             ----------9999999988857899999999999999997798799999782100356899999999999999999998


Q ss_pred             CC--CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             36--7863899982277630134329999999999820232322469999335664104400046303899999999889
Q 002625          596 IY--SENAIWLIQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKH  673 (899)
Q Consensus       596 l~--s~nVRwiIqIpR~y~~~~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl~~VVGiDLvgdEs~~e~~~~~~  673 (899)
                      .+  ++.++|++|++|.++.......+       +.+.                 .+.+.|+|||++|+|..        
T Consensus       166 ~~~~gi~~~li~~~~r~~~~~~~~~~~-------~~a~-----------------~~~~~vvg~dl~g~e~~--------  213 (371)
T 2pgf_A          166 LLDHKIHVALMCIGDTGHEAANIKASA-------DFCL-----------------KHKADFVGFDHGGHEVD--------  213 (371)
T ss_dssp             HTTTSSEEEEEEEEEESSTTCCHHHHH-------HHHH-----------------HTTTTEEEEEEEESCCC--------
T ss_pred             HCCCCCEEEEEEEECCCCCHHHHHHHH-------HHHH-----------------HCCCCEEEEECCCCCCC--------
T ss_conf             715997799999961899999999999-------9998-----------------57997899954898666--------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCH-HHHHHHC--CCCCCCCCCEECCCC
Q ss_conf             99983510101674114568888765647999997599987744545899--996-3799960--379820220005567
Q 002625          674 MPKPAEWTNEFNPAYSYYTYYFYANLYTLNKLRESKGMPTIKLRPHCGEA--GEI-DHLAAAF--LLCNNISHGIHLRKS  748 (899)
Q Consensus       674 ~~~P~~w~~~fnpaysYy~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEa--g~~-e~L~~Al--L~adRIgHGi~L~kd  748 (899)
                         |..+...+.                  .+| +.|+   ++++||||.  +++ +++..++  |+++||+||+.+.++
T Consensus       214 ---~~~~~~~~~------------------~A~-~~gl---~~~~HagE~~~~~~~~~i~~al~~lg~~ri~Hgv~l~~~  268 (371)
T 2pgf_A          214 ---LKEYKEIFD------------------YVR-ESGV---PLSVHAGEDVTLPNLNTLYSAIQVLKVERIGHGIRVAES  268 (371)
T ss_dssp             ---GGGGHHHHH------------------HHH-HTTC---CBEEEESCCTTSSSSHHHHHHHHTSCCSEEEECGGGGGC
T ss_pred             ---HHHHHHHHH------------------HHH-HCCC---CEEEEECCCCCCCCHHHHHHHHHCCCCCEEECCHHCCCC
T ss_conf             ---999999999------------------999-8599---278851787889835889999865697777422322666


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCC--CCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf             799999998399388906455000--125788855899864992998699975735681058999999999859999999
Q 002625          749 PVLQYLYYLAQIGLAMSPLSNNSL--FLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVWKLSSCDL  826 (899)
Q Consensus       749 P~L~yL~~l~qI~IevCPlSN~~L--~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~~LS~~DL  826 (899)
                      |.|+.+++.++|++++||+||..+  +.++..||++.|+++|++|+||||||++|++   +|.+||..+++.++|+..++
T Consensus       269 ~~l~~~l~~~~i~v~~cP~SN~~l~~~~~~~~~pi~~ll~~Gv~V~lgTD~~~~~~~---~l~~e~~~a~~~~~l~~~~l  345 (371)
T 2pgf_A          269 QELIDMVKEKNILLEVCPISNVLLKNAKSMDTHPIRQLYDAGVKVSVNSDDPGMFLT---NINDDYEELYTHLNFTLEDF  345 (371)
T ss_dssp             HHHHHHHHHTTCEEEECHHHHHHTTSSSCGGGCTHHHHHHTTCEEEECCBCHHHHTC---CHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCC---CHHHHHHHHHHHHCCCHHHH
T ss_conf             999999998598399996636876777861118399999789968871899755699---88999999999809799999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCH
Q ss_conf             9999999999089999999998311
Q 002625          827 CEIARNSVYQSGFSHMAKSHWLGNK  851 (899)
Q Consensus       827 ~ELArNSV~~Sff~~e~K~~wlg~~  851 (899)
                      +++++||+.+||+++++|+.|++..
T Consensus       346 ~~lt~ns~~asf~~~~~K~~l~~~~  370 (371)
T 2pgf_A          346 MKMNEWALEKSFMDSNIKDKIKNLY  370 (371)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999999999869999999999863


No 8  
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} PDB: 3hpa_A
Probab=1.00  E-value=1  Score=76.94  Aligned_cols=235  Identities=15%  Similarity=0.065  Sum_probs=136.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCC------CH----HH
Q ss_conf             858999999999999999879538999971455663328999999995023678638999822776------30----13
Q 002625          546 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNEIYSENAIWLIQLPRLY------NV----YK  615 (899)
Q Consensus       546 i~geyLaeitkeviedle~~~vqyaElR~spyg~~~~ew~~la~wi~~~~l~s~nVRwiIqIpR~y------~~----~~  615 (899)
                      .+.+++...++..+..+.+.|+.++.-....... ...+..+++...+   .++.+.+.......-      ++    ..
T Consensus       126 ~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~-~~~~~~~~~~~~~---~g~r~~~~~~~~~~~~~~g~~~p~~~~~~  201 (479)
T 3h4u_A          126 LTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPN-GSRLDDSIGAAQR---IGMRFHASRGAMSVGQRDGGLPPDSVVER  201 (479)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCT-TCCHHHHHHHHHH---HTCEEEEEEEECC----------------
T ss_pred             CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC-CCHHHHHHHHHHH---CCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             7999999999999999984883999977222678-4129999999997---49979998420235643456784011136


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHC----CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             432999999999982023232246999933566410----4400046303899999999889999835101016741145
Q 002625          616 QMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFL----LMVVGFDLVDDESKPERRPTKHMPKPAEWTNEFNPAYSYY  691 (899)
Q Consensus       616 a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl----~~VVGiDLvgdEs~~e~~~~~~~~~P~~w~~~fnpaysYy  691 (899)
                      ....+....++++                    .+.    ..++.+.+.......        .++..+...        
T Consensus       202 ~~~~~~~~~~~~~--------------------~~~~~~~~~~i~~~~~~~~~~~--------~~~e~l~~~--------  245 (479)
T 3h4u_A          202 EPDILRDTQRLIE--------------------TYHDEGRYAMLRVVVAPCSPFS--------VSRDLMRDA--------  245 (479)
T ss_dssp             CHHHHHHHHHHHH--------------------HHCCCSTTCSEEEEEEESCTTS--------SCHHHHHHH--------
T ss_pred             HHHHHHHHHHHHH--------------------HHHCCCCCCCEEEEEECCCCCC--------CCHHHHHHH--------
T ss_conf             9999999999999--------------------8616687885699996687787--------899999999--------


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------------HHHHHHHC-CCCC-CCCCCEECCCCHHHHHHHH
Q ss_conf             6888876564799999759998774454589999-------------63799960-3798-2022000556779999999
Q 002625          692 TYYFYANLYTLNKLRESKGMPTIKLRPHCGEAGE-------------IDHLAAAF-LLCN-NISHGIHLRKSPVLQYLYY  756 (899)
Q Consensus       692 ~YY~yaNi~~LN~lRk~~GLnti~lt~HaGEag~-------------~e~L~~Al-L~ad-RIgHGi~L~kdP~L~yL~~  756 (899)
                                +..++ +.|+   .+..|++|...             .+.+...= +.++ .|.||+.+.  +....++.
T Consensus       246 ----------~~~A~-~~g~---~v~~H~~e~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~i~H~~~~~--~~~~~~l~  309 (479)
T 3h4u_A          246 ----------AVLAR-EYGV---SLHTHLAENVNDIAYSREKFGMTPAEYAEDLGWVGHDVWHAHCVQLD--DAGIGLFA  309 (479)
T ss_dssp             ----------HHHHH-HHTC---EEEEEESCSHHHHHC-------CHHHHHHHTTCCSTTEEEEECTTCC--HHHHHHHH
T ss_pred             ----------HHHHH-HCCC---CEEEEECCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCC--HHHHHHHH
T ss_conf             ----------99999-6699---77888689778999999981999799999749879985999713799--89999999


Q ss_pred             HCCCCEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC----C---CCHHHHHHH
Q ss_conf             839938890645500012578885589986499299869997573568105899999999985----9---999999999
Q 002625          757 LAQIGLAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVW----K---LSSCDLCEI  829 (899)
Q Consensus       757 l~qI~IevCPlSN~~L~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~----~---LS~~DL~EL  829 (899)
                      ..++.+.+||.||..+..  ...|+..+++.|++|+|+||.+..++.  ..+.+|+..+....    +   ++..++.++
T Consensus       310 ~~g~~v~~~p~s~~~l~~--~~~~~~~~~~~Gv~v~lgtD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~al~~  385 (479)
T 3h4u_A          310 RTGTGVAHCPCSNMRLAS--GIAPVKKMRLAGVPVGLGVDGSASNDG--AQMVAEVRQALLLQRVGFGPDAMTAREALEI  385 (479)
T ss_dssp             HHTCEEEECHHHHHHTTC--CCCCHHHHHHTTCCEEECCCCTTSSCC--CCHHHHHHHHHHHHHHHHCTTSCCHHHHHHH
T ss_pred             HCCCEEEECHHHHHHCCC--CCCCHHHHHHCCCEEEEECCCCCCCCC--CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             819959989267512378--888799999789908995887766899--6899999999998403379877899999999


Q ss_pred             H-HHHHHHHCCC
Q ss_conf             9-9999990899
Q 002625          830 A-RNSVYQSGFS  840 (899)
Q Consensus       830 A-rNSV~~Sff~  840 (899)
                      + .|+....+++
T Consensus       386 ~T~~~A~~lg~~  397 (479)
T 3h4u_A          386 ATLGGAKVLNRD  397 (479)
T ss_dssp             TTHHHHHHHTCS
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999982999


No 9  
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Probab=1.00  E-value=1  Score=76.40  Aligned_cols=241  Identities=15%  Similarity=0.038  Sum_probs=142.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCEEEEEECC--CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC------CCHH---
Q ss_conf             8589999999999999998795389999714--5566332899999999502367863899982277------6301---
Q 002625          546 IQGRFLAEVTKQVLLDLEASKYQMAEYRVSI--YGRKQSEWDQLASWFINNEIYSENAIWLIQLPRL------YNVY---  614 (899)
Q Consensus       546 i~geyLaeitkeviedle~~~vqyaElR~sp--yg~~~~ew~~la~wi~~~~l~s~nVRwiIqIpR~------y~~~---  614 (899)
                      .+.+++...+...+.++.+.|+..++-....  .......++.+++...+.   ++...+...+...      .++.   
T Consensus       102 ~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~---g~r~~~~~~~~~~~~~~~~~~~~~~~  178 (456)
T 3ls9_A          102 FGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDL---GIRFHAARSSMTLGKSEGGFCDDLFV  178 (456)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHH---TCEEEEEECCCCCCGGGTCSSCGGGC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHC---CCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             999999999999999998378369994432146865420079999999985---98799974324555545667853334


Q ss_pred             -HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             -3432999999999982023232246999933566410440004630389999999988999983510101674114568
Q 002625          615 -KQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRPTKHMPKPAEWTNEFNPAYSYYTY  693 (899)
Q Consensus       615 -~a~~~V~~fqe~L~nIF~PLfeatl~P~~~~~L~~fl~~VVGiDLvgdEs~~e~~~~~~~~~P~~w~~~fnpaysYy~Y  693 (899)
                       .....+....++++....                ......+.+.+......        ..++..+...          
T Consensus       179 ~~~~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~l~~~----------  224 (456)
T 3ls9_A          179 EPVDRVVQHCLGLIDQYHE----------------PEPFGMVRIALGPCGVP--------YDKPELFEAF----------  224 (456)
T ss_dssp             CCHHHHHHHHHHHHHHHCC----------------CSTTCSEEEEECCCCTT--------TSCHHHHHHH----------
T ss_pred             CCHHHHHHHHHHHHHHHHC----------------CCCCCCEEEEEECCCCC--------CCCHHHHHHH----------
T ss_conf             5799999999999998507----------------68789569999568788--------8899999999----------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH------------HHHHHHC-CCC-CCCCCCEECCCCHHHHHHHHHCC
Q ss_conf             888765647999997599987744545899996------------3799960-379-82022000556779999999839
Q 002625          694 YFYANLYTLNKLRESKGMPTIKLRPHCGEAGEI------------DHLAAAF-LLC-NNISHGIHLRKSPVLQYLYYLAQ  759 (899)
Q Consensus       694 Y~yaNi~~LN~lRk~~GLnti~lt~HaGEag~~------------e~L~~Al-L~a-dRIgHGi~L~kdP~L~yL~~l~q  759 (899)
                              +..++ +.|+   ++..|++|....            +.+...- +.. .+|.|++.+...  ...++...+
T Consensus       225 --------~~~a~-~~g~---~v~~H~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~H~~~~~~~--~~~~l~~~g  290 (456)
T 3ls9_A          225 --------AQMAA-DYDV---RLHTHFYEPLDAGMSDHLYGMTPWRFLEKHGWASDRVWLAHAVVPPRE--EIPEFADAG  290 (456)
T ss_dssp             --------HHHHH-HHTC---EEEEEECCTTHHHHHHHHHSSCHHHHHHHTTCSSTTEEEEECCSCCGG--GHHHHHHHT
T ss_pred             --------HHHHH-HCCC---CEEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCCCHH--HHHHHHHCC
T ss_conf             --------99999-7799---889994787237899988099989999974998999089961579989--999999719


Q ss_pred             CCEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC----------CCCHHHHHHH
Q ss_conf             938890645500012578885589986499299869997573568105899999999985----------9999999999
Q 002625          760 IGLAMSPLSNNSLFLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKVW----------KLSSCDLCEI  829 (899)
Q Consensus       760 I~IevCPlSN~~L~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~~----------~LS~~DL~EL  829 (899)
                      +.+.+||.||..+..  ...|++.+++.|++|+|+||.|.....  ..+.+|+..+....          +++..++.++
T Consensus       291 ~~~~~~p~s~~~l~~--~~~~~~~~~~~Gv~v~lgtD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  366 (456)
T 3ls9_A          291 VAIAHLIAPDLRMGW--GLAPIREYLDAGITVGFGTTGSASNDG--GNLLGDLRLAALAHRPADPNEPEKWLSARELLRM  366 (456)
T ss_dssp             CEEEECHHHHHHTTC--CCCCHHHHHHTTCEEEECCCCTTSSCC--CCHHHHHHHHHHHTGGGSTTCGGGSCCHHHHHHH
T ss_pred             CEEEECHHHHHHCCC--CCCHHHHHHHCCCCEEEECCCCCCCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf             979988467744378--852199999789919997888866898--7999999999997342466655568899999999


Q ss_pred             H-HHHHHHHCCCH
Q ss_conf             9-99999908999
Q 002625          830 A-RNSVYQSGFSH  841 (899)
Q Consensus       830 A-rNSV~~Sff~~  841 (899)
                      + .|+....+.++
T Consensus       367 ~T~~~A~~lg~~~  379 (456)
T 3ls9_A          367 ATRGSAECLGRPD  379 (456)
T ss_dssp             TTHHHHHHTTCTT
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9998999839888


No 10 
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A
Probab=1.00  E-value=1  Score=71.97  Aligned_cols=127  Identities=17%  Similarity=0.203  Sum_probs=94.7

Q ss_pred             HHHCCCCCCCCCCCCCCCCC-HH-------------HHHHHC-CCCC--CCCCCEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf             99759998774454589999-63-------------799960-3798--2022000556779999999839938890645
Q 002625          706 RESKGMPTIKLRPHCGEAGE-ID-------------HLAAAF-LLCN--NISHGIHLRKSPVLQYLYYLAQIGLAMSPLS  768 (899)
Q Consensus       706 Rk~~GLnti~lt~HaGEag~-~e-------------~L~~Al-L~ad--RIgHGi~L~kdP~L~yL~~l~qI~IevCPlS  768 (899)
                      .++.|+   .+..|++|... .+             .....+ +...  .+.|++.+..  ....+++..++.+.+||.|
T Consensus       252 A~~~g~---~v~~H~~e~~~e~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~H~~~l~~--~~~~~l~~~g~~v~~~P~s  326 (476)
T 4aql_A          252 AKTRDL---HIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSA--EELNVFHERGASIAHCPNS  326 (476)
T ss_dssp             HHHTTC---CEEEEESCSHHHHHHHHHHCTTSSSHHHHHHTTTCCSTTEEEEECTTCCH--HHHHHHHHHTCEEEECHHH
T ss_pred             HHHCCC---CEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEECCCCCH--HHHHHHHHCCCEEEECCHH
T ss_conf             997699---65787639989999999983889998999997599999979994887999--9999999859999988115


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH-----------CCCCHHHHHHHH-HHHHHH
Q ss_conf             50001257888558998649929986999757356810589999999998-----------599999999999-999999
Q 002625          769 NNSLFLDYHRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAKV-----------WKLSSCDLCEIA-RNSVYQ  836 (899)
Q Consensus       769 N~~L~~~y~~HPf~~ll~~GL~VSLSTDDPl~Fh~T~epL~EEYsiAaq~-----------~~LS~~DL~ELA-rNSV~~  836 (899)
                      |..+....  .|++.+++.|++|+|+||.+..+.   ..+.+|+..+...           .+++..+..+++ .|+...
T Consensus       327 n~~l~~g~--~p~~~~~~~Gv~v~lGtD~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~  401 (476)
T 4aql_A          327 NLSLSSGF--LNVLEVLKHEVKIGLGTDVAGGYS---YSMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQA  401 (476)
T ss_dssp             HHHTTCCC--CCHHHHHHTTCEEEECCCTTTSSC---CCHHHHHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHH
T ss_pred             HHHHCCCH--HHHHHHHHCCCCEEEECCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             65537656--999999978991899678987899---8999999999999766410457777689999999999999998


Q ss_pred             HCCCHH
Q ss_conf             089999
Q 002625          837 SGFSHM  842 (899)
Q Consensus       837 Sff~~e  842 (899)
                      .++++.
T Consensus       402 lgl~~~  407 (476)
T 4aql_A          402 LGLDGE  407 (476)
T ss_dssp             TTCTTT
T ss_pred             HCCCCC
T ss_conf             489887


Done!