BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002627
(899 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889
++ ER C +C+ +E+SVVF+PC H VVC C ++ CP CR I+
Sbjct: 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQEC-----APSLRKCPICRGIIK 337
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRI 892
++ ER C +CL +S+VF+PC H +VC C G++ CP CR+P++ R+
Sbjct: 10 LQEERTCKVCLDRAVSIVFVPCGH-LVCAEC-----APGLQLCPICRAPVRSRV 57
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889
++ ER C +C+ +E+S+VF+PC H VVC C ++ CP CRS I+
Sbjct: 21 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDC-----APSLRKCPICRSTIK 66
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 858 LPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890
+PC H V C C LHEK+G K CP C P+QR
Sbjct: 18 IPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQR 49
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI 888
++ E+ C +C+ +++VF+PC H V C C E +K CP C + I
Sbjct: 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTVI 66
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI 888
++ E+ C +C+ +++VF+PC H V C C E +K CP C + I
Sbjct: 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTVI 65
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI 888
++ E+ C +C+ +++VF+PC H V C C E +K CP C + I
Sbjct: 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTVI 65
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889
C++C EE++ F PC H V C +C ++ CP CRS ++
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESC-----AAQLQSCPVCRSRVE 60
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 834 SGTGGVK----RERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889
SG+ GV+ ++CV+C + ++ V LPC H +C C + ++ CP CR +Q
Sbjct: 3 SGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQ-----CPMCRQFVQ 57
Query: 890 RRI 892
Sbjct: 58 ESF 60
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894
C +C + V PC H ++CT+C ++ + CP CR I+ P+
Sbjct: 29 CKICAENDKDVKIEPCGH-LMCTSCLTAWQESDGQGCPFCRCEIKGTEPI 77
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894
C +C + V PC H ++CT+C ++ + CP CR I+ P+
Sbjct: 341 CKICAENDKDVKIEPCGH-LMCTSCLTAWQESDGQGCPFCRCEIKGTEPI 389
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 845 CVMCLSEEMS--VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889
CV+C + +V H + C TC + +K+ K CP CR PIQ
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 55
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894
C +C + V PC H ++CT+C ++ + CP CR I+ P+
Sbjct: 337 CKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 385
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894
C +C + V PC H ++CT+C ++ + CP CR I+ P+
Sbjct: 337 CKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 385
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894
C +C + V PC H ++CT+C ++ + CP CR I+ P+
Sbjct: 335 CKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894
C +C + V PC H ++CT+C ++ + CP CR I+ P+
Sbjct: 335 CKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 845 CVMCLSEEMS--VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889
CV+C + +V H + C TC + +K+ K CP CR PIQ
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQ 56
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 842 ERECVMCLSEEMSVVFLPCAHQVVCTTC-NELHEKQGMKDCPSCRSPIQ 889
E +C++C + V L CAH C+ C NE +++ +CP CR I+
Sbjct: 53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKI--ECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTC-NELHEKQGMKDCPSCRSPIQ 889
++ E +C++C + V L CAH C+ C NE +++ +CP CR I+
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKI--ECPICRKDIK 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,484,574
Number of Sequences: 62578
Number of extensions: 906562
Number of successful extensions: 1970
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1914
Number of HSP's gapped (non-prelim): 73
length of query: 899
length of database: 14,973,337
effective HSP length: 108
effective length of query: 791
effective length of database: 8,214,913
effective search space: 6497996183
effective search space used: 6497996183
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)