Query 002627
Match_columns 899
No_of_seqs 386 out of 1300
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0978 E3 ubiquitin ligase in 99.8 5.7E-17 1.2E-21 190.0 30.2 294 539-896 384-698 (698)
2 KOG4265 Predicted E3 ubiquitin 99.3 7.4E-13 1.6E-17 145.0 1.7 98 797-898 245-345 (349)
3 KOG4172 Predicted E3 ubiquitin 99.1 1.1E-11 2.4E-16 102.7 -2.2 54 843-896 8-61 (62)
4 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.8E-10 6.1E-15 92.9 3.2 49 842-891 2-50 (50)
5 KOG1571 Predicted E3 ubiquitin 98.6 1.3E-08 2.8E-13 112.3 2.8 55 838-897 301-355 (355)
6 KOG4275 Predicted E3 ubiquitin 98.6 5.5E-09 1.2E-13 111.9 -0.1 51 841-896 299-349 (350)
7 PLN03208 E3 ubiquitin-protein 98.3 3.9E-07 8.5E-12 94.0 4.7 58 838-896 14-88 (193)
8 KOG1100 Predicted E3 ubiquitin 98.2 4E-07 8.6E-12 95.4 2.2 47 845-896 161-207 (207)
9 TIGR02169 SMC_prok_A chromosom 98.2 0.0027 5.8E-08 80.3 36.2 10 774-783 466-475 (1164)
10 KOG0320 Predicted E3 ubiquitin 98.2 5.5E-07 1.2E-11 91.4 2.0 53 842-896 131-187 (187)
11 PHA02929 N1R/p28-like protein; 98.2 1.3E-06 2.9E-11 93.1 4.4 55 840-896 172-234 (238)
12 KOG1029 Endocytic adaptor prot 98.2 0.00067 1.5E-08 81.0 26.0 109 593-719 349-457 (1118)
13 KOG0317 Predicted E3 ubiquitin 98.1 1.2E-06 2.5E-11 94.7 3.3 50 840-891 237-286 (293)
14 PF13923 zf-C3HC4_2: Zinc fing 98.1 1.3E-06 2.7E-11 68.0 2.4 38 845-884 1-39 (39)
15 KOG0980 Actin-binding protein 98.1 0.021 4.4E-07 69.9 37.6 163 528-707 319-481 (980)
16 KOG0823 Predicted E3 ubiquitin 98.1 2.6E-06 5.6E-11 89.7 3.6 57 839-896 44-104 (230)
17 COG1579 Zn-ribbon protein, pos 98.0 0.0023 4.9E-08 68.8 24.9 95 619-720 28-124 (239)
18 KOG0250 DNA repair protein RAD 98.0 0.0046 9.9E-08 77.0 29.7 189 525-715 168-388 (1074)
19 TIGR02169 SMC_prok_A chromosom 98.0 0.016 3.5E-07 73.4 35.8 39 617-655 310-348 (1164)
20 PHA02926 zinc finger-like prot 97.9 4E-06 8.6E-11 87.9 2.3 55 839-894 167-235 (242)
21 PF13639 zf-RING_2: Ring finge 97.9 4.3E-06 9.3E-11 66.5 1.8 40 844-885 2-44 (44)
22 PRK03918 chromosome segregatio 97.9 0.029 6.2E-07 69.8 35.5 36 616-651 239-274 (880)
23 cd00162 RING RING-finger (Real 97.9 9.5E-06 2.1E-10 62.4 3.2 44 844-888 1-45 (45)
24 smart00184 RING Ring finger. E 97.8 1.1E-05 2.3E-10 59.9 2.8 39 845-884 1-39 (39)
25 PF07888 CALCOCO1: Calcium bin 97.8 0.057 1.2E-06 64.1 34.0 60 669-728 288-361 (546)
26 PRK02224 chromosome segregatio 97.8 0.018 3.9E-07 71.7 31.9 48 679-726 315-362 (880)
27 PF15227 zf-C3HC4_4: zinc fing 97.8 1.6E-05 3.4E-10 63.4 3.0 39 845-884 1-42 (42)
28 TIGR00599 rad18 DNA repair pro 97.8 1.4E-05 2.9E-10 91.0 3.2 53 836-890 20-72 (397)
29 KOG0971 Microtubule-associated 97.8 0.085 1.8E-06 64.8 34.4 147 574-726 273-437 (1243)
30 KOG1785 Tyrosine kinase negati 97.8 9.3E-06 2E-10 90.5 1.6 55 841-896 368-423 (563)
31 PF00097 zf-C3HC4: Zinc finger 97.8 1.7E-05 3.6E-10 61.9 2.5 39 845-884 1-41 (41)
32 PRK02224 chromosome segregatio 97.7 0.073 1.6E-06 66.4 35.2 22 548-569 475-496 (880)
33 KOG2164 Predicted E3 ubiquitin 97.7 1.6E-05 3.4E-10 91.6 3.0 55 842-897 186-246 (513)
34 PF00261 Tropomyosin: Tropomyo 97.7 0.017 3.6E-07 61.9 25.3 111 616-726 93-203 (237)
35 PRK11637 AmiB activator; Provi 97.7 0.032 6.8E-07 64.5 28.7 37 617-653 91-127 (428)
36 KOG0161 Myosin class II heavy 97.7 0.039 8.5E-07 73.3 32.1 65 539-604 791-862 (1930)
37 KOG0161 Myosin class II heavy 97.7 0.062 1.3E-06 71.6 33.7 46 677-722 1096-1141(1930)
38 PF14634 zf-RING_5: zinc-RING 97.6 3.4E-05 7.5E-10 61.7 2.8 41 844-886 1-44 (44)
39 smart00504 Ubox Modified RING 97.6 5E-05 1.1E-09 63.9 3.5 45 843-889 2-46 (63)
40 KOG0978 E3 ubiquitin ligase in 97.6 0.073 1.6E-06 64.8 30.9 91 688-786 527-617 (698)
41 KOG0824 Predicted E3 ubiquitin 97.5 3E-05 6.6E-10 84.3 1.4 51 841-892 6-56 (324)
42 PF00261 Tropomyosin: Tropomyo 97.5 0.14 3E-06 54.9 28.8 178 599-784 38-218 (237)
43 PF07888 CALCOCO1: Calcium bin 97.5 0.41 8.8E-06 57.2 35.2 38 681-718 286-323 (546)
44 PF09726 Macoilin: Transmembra 97.5 0.0049 1.1E-07 75.3 19.4 89 620-715 423-518 (697)
45 PRK03918 chromosome segregatio 97.5 0.27 5.8E-06 61.4 34.9 23 544-566 448-470 (880)
46 COG1196 Smc Chromosome segrega 97.5 0.24 5.3E-06 64.2 35.2 82 582-663 195-287 (1163)
47 COG1196 Smc Chromosome segrega 97.5 0.27 5.8E-06 63.8 35.4 19 548-567 668-686 (1163)
48 COG5574 PEX10 RING-finger-cont 97.4 5.1E-05 1.1E-09 81.4 1.8 49 840-889 213-262 (271)
49 PRK11637 AmiB activator; Provi 97.4 0.19 4.1E-06 58.2 30.2 36 620-655 87-122 (428)
50 TIGR00570 cdk7 CDK-activating 97.4 0.00012 2.5E-09 80.9 3.4 48 842-890 3-55 (309)
51 COG5432 RAD18 RING-finger-cont 97.3 8.5E-05 1.8E-09 80.4 2.0 51 837-889 20-70 (391)
52 PF12128 DUF3584: Protein of u 97.3 0.53 1.2E-05 61.4 35.7 22 694-715 773-794 (1201)
53 KOG0996 Structural maintenance 97.3 0.3 6.4E-06 61.9 31.3 171 613-784 389-570 (1293)
54 KOG0994 Extracellular matrix g 97.3 0.23 4.9E-06 62.5 29.7 57 616-672 1571-1627(1758)
55 PHA02562 46 endonuclease subun 97.2 0.5 1.1E-05 55.9 32.0 23 680-702 301-323 (562)
56 KOG0250 DNA repair protein RAD 97.2 0.38 8.3E-06 60.7 31.1 119 612-737 313-432 (1074)
57 KOG0287 Postreplication repair 97.2 9.7E-05 2.1E-09 81.3 0.6 51 838-890 19-69 (442)
58 KOG2177 Predicted E3 ubiquitin 97.2 0.00013 2.9E-09 75.3 1.3 47 838-886 9-55 (386)
59 KOG1029 Endocytic adaptor prot 97.2 0.43 9.4E-06 58.2 29.9 107 614-720 407-521 (1118)
60 COG5540 RING-finger-containing 97.2 0.00025 5.4E-09 77.3 3.0 48 841-889 322-372 (374)
61 KOG0612 Rho-associated, coiled 97.1 0.49 1.1E-05 60.3 31.2 115 606-720 510-637 (1317)
62 PF13445 zf-RING_UBOX: RING-ty 97.1 0.00019 4.2E-09 57.7 1.6 36 845-882 1-43 (43)
63 KOG4807 F-actin binding protei 97.1 0.22 4.7E-06 56.7 25.2 214 552-780 295-536 (593)
64 COG4372 Uncharacterized protei 97.1 0.67 1.5E-05 52.9 28.8 34 617-650 125-158 (499)
65 COG4942 Membrane-bound metallo 97.1 0.9 2E-05 52.8 30.6 36 712-747 209-244 (420)
66 KOG0971 Microtubule-associated 97.1 1.5 3.3E-05 54.6 39.0 132 540-694 218-355 (1243)
67 KOG0612 Rho-associated, coiled 97.1 0.52 1.1E-05 60.1 30.2 56 545-600 462-528 (1317)
68 TIGR00606 rad50 rad50. This fa 97.0 0.33 7.1E-06 63.8 30.1 18 617-634 767-784 (1311)
69 KOG0996 Structural maintenance 97.0 0.56 1.2E-05 59.6 30.1 134 613-746 424-561 (1293)
70 PF14447 Prok-RING_4: Prokaryo 97.0 0.00028 6.1E-09 59.5 1.5 47 840-890 5-51 (55)
71 TIGR00606 rad50 rad50. This fa 97.0 0.79 1.7E-05 60.3 33.3 46 677-722 880-925 (1311)
72 PF05701 WEMBL: Weak chloropla 96.9 0.86 1.9E-05 54.5 29.9 102 617-718 276-377 (522)
73 KOG4643 Uncharacterized coiled 96.9 0.98 2.1E-05 56.7 30.5 108 545-657 195-350 (1195)
74 COG5243 HRD1 HRD ubiquitin lig 96.9 0.00049 1.1E-08 76.7 2.3 47 840-888 285-344 (491)
75 PF04564 U-box: U-box domain; 96.9 0.00088 1.9E-08 59.2 3.4 50 840-890 2-51 (73)
76 PF13514 AAA_27: AAA domain 96.9 1 2.2E-05 58.4 31.9 172 535-709 138-327 (1111)
77 PRK04863 mukB cell division pr 96.9 0.46 9.9E-06 63.0 29.0 119 613-732 291-409 (1486)
78 KOG0963 Transcription factor/C 96.9 1.4 3.1E-05 53.0 30.2 187 547-740 120-326 (629)
79 KOG0999 Microtubule-associated 96.8 0.36 7.8E-06 57.0 24.6 142 605-746 91-248 (772)
80 PF15254 CCDC14: Coiled-coil d 96.8 0.28 6E-06 60.0 24.4 158 586-758 343-532 (861)
81 KOG0964 Structural maintenance 96.8 0.67 1.5E-05 57.9 27.8 97 585-688 277-373 (1200)
82 KOG4692 Predicted E3 ubiquitin 96.8 0.00046 1E-08 76.5 1.4 50 840-891 420-469 (489)
83 KOG0933 Structural maintenance 96.8 2.1 4.6E-05 54.0 31.7 90 644-740 788-877 (1174)
84 PF05667 DUF812: Protein of un 96.8 0.26 5.7E-06 59.6 24.1 170 615-788 328-530 (594)
85 PF10174 Cast: RIM-binding pro 96.8 2.2 4.8E-05 53.3 32.3 22 544-565 234-255 (775)
86 PRK09039 hypothetical protein; 96.7 0.21 4.6E-06 56.6 21.9 36 620-655 58-93 (343)
87 KOG0976 Rho/Rac1-interacting s 96.7 1.7 3.8E-05 53.4 29.8 147 548-707 256-408 (1265)
88 COG1579 Zn-ribbon protein, pos 96.7 0.42 9.1E-06 51.8 22.9 10 877-886 220-229 (239)
89 PF12718 Tropomyosin_1: Tropom 96.7 0.35 7.7E-06 48.4 20.9 56 682-737 77-132 (143)
90 PF10174 Cast: RIM-binding pro 96.7 2.7 5.9E-05 52.6 32.6 176 544-737 297-496 (775)
91 PF09730 BicD: Microtubule-ass 96.7 0.25 5.3E-06 60.8 23.5 142 601-742 20-171 (717)
92 PF12678 zf-rbx1: RING-H2 zinc 96.7 0.0012 2.7E-08 58.5 2.9 40 844-885 21-73 (73)
93 COG4942 Membrane-bound metallo 96.7 2 4.4E-05 50.0 29.3 27 617-643 82-108 (420)
94 KOG0963 Transcription factor/C 96.6 1.1 2.4E-05 53.8 27.2 182 540-724 137-342 (629)
95 KOG0980 Actin-binding protein 96.6 2.2 4.8E-05 53.2 30.0 158 547-712 357-528 (980)
96 PF08647 BRE1: BRE1 E3 ubiquit 96.6 0.048 1E-06 51.0 12.7 89 598-686 4-95 (96)
97 PHA02562 46 endonuclease subun 96.6 1.7 3.7E-05 51.5 28.8 25 620-644 253-277 (562)
98 PTZ00121 MAEBL; Provisional 96.5 1.8 3.9E-05 56.3 29.4 9 525-533 1074-1082(2084)
99 TIGR01843 type_I_hlyD type I s 96.5 0.6 1.3E-05 52.8 23.7 7 545-551 66-72 (423)
100 COG0419 SbcC ATPase involved i 96.5 4.3 9.3E-05 51.7 36.7 9 841-849 456-464 (908)
101 KOG4628 Predicted E3 ubiquitin 96.5 0.0016 3.5E-08 73.1 2.8 47 843-890 230-279 (348)
102 KOG4674 Uncharacterized conser 96.5 4.9 0.00011 54.0 33.7 68 593-660 692-762 (1822)
103 PF15070 GOLGA2L5: Putative go 96.4 0.23 4.9E-06 60.4 20.6 64 589-656 6-70 (617)
104 KOG0933 Structural maintenance 96.4 3.5 7.6E-05 52.1 30.2 143 550-693 743-900 (1174)
105 PF08317 Spc7: Spc7 kinetochor 96.4 0.74 1.6E-05 51.7 23.3 90 618-717 159-248 (325)
106 PF05701 WEMBL: Weak chloropla 96.4 3.4 7.3E-05 49.5 32.4 24 614-637 171-194 (522)
107 PRK04863 mukB cell division pr 96.4 4.8 0.0001 53.8 33.5 22 550-571 316-337 (1486)
108 KOG0311 Predicted E3 ubiquitin 96.3 0.00052 1.1E-08 76.3 -1.9 52 839-891 40-92 (381)
109 PF12128 DUF3584: Protein of u 96.3 6.1 0.00013 51.9 35.2 92 548-642 249-340 (1201)
110 KOG0982 Centrosomal protein Nu 96.3 1.3 2.9E-05 51.1 24.5 110 545-662 219-330 (502)
111 PRK04778 septation ring format 96.3 3.9 8.5E-05 49.4 30.2 181 552-739 169-388 (569)
112 COG0419 SbcC ATPase involved i 96.3 5.3 0.00011 50.8 33.8 45 547-593 472-517 (908)
113 PF09726 Macoilin: Transmembra 96.3 4.7 0.0001 50.1 36.8 39 676-714 543-581 (697)
114 PF09755 DUF2046: Uncharacteri 96.2 1.8 4E-05 48.5 24.5 71 615-691 27-97 (310)
115 KOG0802 E3 ubiquitin ligase [P 96.2 0.0017 3.7E-08 77.1 1.1 48 840-889 289-341 (543)
116 KOG0976 Rho/Rac1-interacting s 96.2 5.1 0.00011 49.6 32.4 126 550-680 101-241 (1265)
117 PF15070 GOLGA2L5: Putative go 96.1 4.2 9.1E-05 49.8 29.2 129 587-729 36-183 (617)
118 KOG0999 Microtubule-associated 96.1 2.3 5E-05 50.6 25.6 174 605-786 38-217 (772)
119 PF15619 Lebercilin: Ciliary p 96.1 1.7 3.7E-05 45.8 22.6 99 631-729 14-112 (194)
120 KOG0249 LAR-interacting protei 96.1 0.47 1E-05 57.6 20.1 158 625-784 94-258 (916)
121 COG5236 Uncharacterized conser 96.1 0.0047 1E-07 68.6 3.6 54 837-891 56-110 (493)
122 KOG0977 Nuclear envelope prote 96.0 2.8 6.1E-05 50.3 26.3 12 552-563 53-64 (546)
123 KOG1039 Predicted E3 ubiquitin 96.0 0.0029 6.2E-08 71.3 1.9 53 840-893 159-225 (344)
124 TIGR02680 conserved hypothetic 96.0 7.8 0.00017 51.6 32.9 41 558-598 247-287 (1353)
125 KOG2072 Translation initiation 96.0 4.9 0.00011 50.0 28.1 44 584-627 654-703 (988)
126 TIGR02680 conserved hypothetic 95.9 10 0.00022 50.6 34.6 108 536-656 209-324 (1353)
127 PF14835 zf-RING_6: zf-RING of 95.9 0.0023 5E-08 55.8 0.1 46 839-888 4-50 (65)
128 KOG0977 Nuclear envelope prote 95.8 2.4 5.2E-05 50.9 24.5 44 613-656 139-182 (546)
129 KOG0995 Centromere-associated 95.7 6.8 0.00015 47.2 31.7 85 584-668 256-340 (581)
130 TIGR02977 phageshock_pspA phag 95.7 1.7 3.6E-05 46.3 20.8 111 617-727 33-148 (219)
131 PRK09039 hypothetical protein; 95.7 2.2 4.8E-05 48.5 23.0 29 614-642 73-101 (343)
132 PRK04778 septation ring format 95.6 6.5 0.00014 47.6 27.8 120 601-720 300-432 (569)
133 KOG0994 Extracellular matrix g 95.6 8.4 0.00018 49.6 28.3 42 622-663 1598-1639(1758)
134 KOG2891 Surface glycoprotein [ 95.6 2 4.3E-05 47.3 20.8 55 585-644 283-341 (445)
135 PF10473 CENP-F_leu_zip: Leuci 95.5 2.8 6E-05 42.3 20.2 99 615-720 3-101 (140)
136 TIGR01843 type_I_hlyD type I s 95.5 3 6.6E-05 47.1 23.3 8 772-779 255-262 (423)
137 PRK10698 phage shock protein P 95.5 2.1 4.6E-05 45.9 20.6 110 617-726 33-147 (222)
138 PRK10246 exonuclease subunit S 95.4 13 0.00028 48.3 35.8 14 838-851 499-512 (1047)
139 KOG0018 Structural maintenance 95.4 6.9 0.00015 50.0 27.1 149 637-797 733-900 (1141)
140 PF00038 Filament: Intermediat 95.4 5.4 0.00012 44.0 29.7 89 640-731 166-255 (312)
141 TIGR03185 DNA_S_dndD DNA sulfu 95.4 9.8 0.00021 46.7 30.1 15 860-874 603-617 (650)
142 PF00038 Filament: Intermediat 95.4 5.7 0.00012 43.8 32.0 169 614-786 95-278 (312)
143 COG5152 Uncharacterized conser 95.3 0.0053 1.1E-07 63.9 0.5 49 843-893 197-245 (259)
144 PRK11281 hypothetical protein; 95.3 2.8 6.1E-05 54.4 24.5 24 571-594 85-108 (1113)
145 KOG0979 Structural maintenance 95.3 10 0.00023 48.2 27.9 64 660-723 293-356 (1072)
146 KOG0828 Predicted E3 ubiquitin 95.3 0.0075 1.6E-07 69.6 1.5 51 839-890 568-635 (636)
147 PF13851 GAS: Growth-arrest sp 95.2 3.4 7.3E-05 43.7 20.8 51 646-696 30-80 (201)
148 KOG1813 Predicted E3 ubiquitin 95.2 0.0064 1.4E-07 66.6 0.5 49 843-893 242-290 (313)
149 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.2 3.6 7.9E-05 40.5 20.2 106 626-738 7-112 (132)
150 PF10481 CENP-F_N: Cenp-F N-te 95.2 2.5 5.3E-05 46.6 19.7 124 564-718 5-128 (307)
151 PF00769 ERM: Ezrin/radixin/mo 95.1 1.6 3.4E-05 47.5 18.5 111 614-731 11-121 (246)
152 PF04849 HAP1_N: HAP1 N-termin 95.1 6.7 0.00015 44.1 23.4 110 629-745 160-273 (306)
153 PF05483 SCP-1: Synaptonemal c 95.0 12 0.00026 45.9 32.5 152 566-718 395-546 (786)
154 KOG4403 Cell surface glycoprot 95.0 2.5 5.4E-05 49.0 20.2 62 528-600 203-265 (575)
155 COG5185 HEC1 Protein involved 95.0 9.9 0.00022 44.8 27.0 37 752-788 515-551 (622)
156 PRK00106 hypothetical protein; 95.0 8.9 0.00019 46.3 25.7 12 850-861 262-273 (535)
157 PF10186 Atg14: UV radiation r 95.0 3.2 6.9E-05 44.9 20.6 18 581-598 21-38 (302)
158 PF00769 ERM: Ezrin/radixin/mo 94.9 1.8 3.8E-05 47.1 18.3 46 617-662 28-73 (246)
159 KOG4159 Predicted E3 ubiquitin 94.9 0.013 2.9E-07 67.2 2.1 51 838-890 80-130 (398)
160 KOG4673 Transcription factor T 94.9 14 0.00029 45.5 30.0 78 690-768 542-621 (961)
161 KOG0243 Kinesin-like protein [ 94.7 6.9 0.00015 50.1 24.6 21 592-612 406-426 (1041)
162 KOG0964 Structural maintenance 94.7 18 0.00039 46.1 29.7 41 622-662 258-298 (1200)
163 KOG0962 DNA repair protein RAD 94.6 21 0.00045 47.0 29.0 103 679-781 972-1080(1294)
164 PF04012 PspA_IM30: PspA/IM30 94.6 6.3 0.00014 41.6 21.2 111 617-736 32-142 (221)
165 PF10168 Nup88: Nuclear pore c 94.6 1.8 4E-05 53.7 19.5 61 619-686 562-622 (717)
166 PF11559 ADIP: Afadin- and alp 94.6 2.2 4.8E-05 42.6 16.8 103 672-785 46-148 (151)
167 COG4372 Uncharacterized protei 94.6 11 0.00025 43.4 30.3 41 684-724 202-242 (499)
168 COG5220 TFB3 Cdk activating ki 94.5 0.011 2.3E-07 63.2 0.2 46 841-887 9-62 (314)
169 PF15066 CAGE1: Cancer-associa 94.5 13 0.00028 43.8 26.7 138 637-777 363-506 (527)
170 PF09730 BicD: Microtubule-ass 94.5 5.5 0.00012 49.5 22.9 52 680-738 361-412 (717)
171 KOG4643 Uncharacterized coiled 94.5 20 0.00043 45.8 27.6 121 600-720 411-537 (1195)
172 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.4 5.6 0.00012 39.2 19.3 31 681-711 94-124 (132)
173 PF12861 zf-Apc11: Anaphase-pr 94.3 0.032 7E-07 51.3 2.8 34 855-889 47-82 (85)
174 smart00787 Spc7 Spc7 kinetocho 94.3 12 0.00026 42.3 24.5 92 617-718 153-244 (312)
175 PF13514 AAA_27: AAA domain 94.2 26 0.00057 45.8 29.9 31 542-572 720-750 (1111)
176 COG2433 Uncharacterized conser 94.1 3.8 8.3E-05 49.5 19.6 40 209-248 37-76 (652)
177 PF10481 CENP-F_N: Cenp-F N-te 94.0 2 4.3E-05 47.4 15.8 120 540-663 3-136 (307)
178 KOG1853 LIS1-interacting prote 94.0 12 0.00025 41.2 23.1 29 628-656 51-79 (333)
179 TIGR01005 eps_transp_fam exopo 94.0 6.2 0.00014 49.0 22.4 31 615-645 237-267 (754)
180 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.059 1.3E-06 58.6 4.2 49 839-890 110-162 (260)
181 PRK12704 phosphodiesterase; Pr 93.8 11 0.00024 45.4 23.2 8 853-860 250-257 (520)
182 PF14570 zf-RING_4: RING/Ubox 93.8 0.033 7.1E-07 46.2 1.6 43 845-888 1-47 (48)
183 PF05667 DUF812: Protein of un 93.8 22 0.00047 43.6 33.0 43 615-657 387-429 (594)
184 PF07111 HCR: Alpha helical co 93.8 21 0.00046 44.1 25.2 46 543-593 61-107 (739)
185 KOG0018 Structural maintenance 93.7 28 0.00061 44.9 26.8 109 616-727 221-352 (1141)
186 KOG1853 LIS1-interacting prote 93.7 13 0.00028 40.8 24.0 46 618-663 48-93 (333)
187 KOG0982 Centrosomal protein Nu 93.6 19 0.00041 42.2 26.1 35 549-583 251-285 (502)
188 PF05262 Borrelia_P83: Borreli 93.5 6.1 0.00013 47.1 20.0 11 840-850 389-399 (489)
189 KOG1003 Actin filament-coating 93.4 13 0.00027 39.6 24.1 111 620-730 30-140 (205)
190 TIGR03319 YmdA_YtgF conserved 93.3 15 0.00034 44.1 23.3 13 850-862 241-253 (514)
191 PF12325 TMF_TATA_bd: TATA ele 93.3 3.7 8.1E-05 40.3 15.1 27 629-655 16-42 (120)
192 PF12718 Tropomyosin_1: Tropom 93.3 9.9 0.00022 38.2 21.2 10 589-598 2-11 (143)
193 PF06160 EzrA: Septation ring 93.3 25 0.00053 42.7 30.0 193 552-746 165-391 (560)
194 PF04012 PspA_IM30: PspA/IM30 93.3 13 0.00027 39.3 24.1 41 679-719 99-139 (221)
195 KOG4674 Uncharacterized conser 93.2 45 0.00097 45.6 33.5 165 558-722 76-254 (1822)
196 PF08317 Spc7: Spc7 kinetochor 93.2 18 0.00039 40.9 26.1 16 769-784 275-290 (325)
197 KOG0825 PHD Zn-finger protein 93.2 0.022 4.8E-07 68.8 -0.5 51 841-893 122-175 (1134)
198 PRK10929 putative mechanosensi 93.2 22 0.00048 46.5 25.6 89 611-700 147-237 (1109)
199 KOG3002 Zn finger protein [Gen 93.2 0.046 1E-06 60.8 2.0 47 839-891 45-93 (299)
200 COG1842 PspA Phage shock prote 93.2 15 0.00032 39.8 20.7 45 617-661 33-77 (225)
201 PF04111 APG6: Autophagy prote 93.1 1.9 4.2E-05 48.5 14.6 16 770-785 120-135 (314)
202 KOG2879 Predicted E3 ubiquitin 93.1 0.058 1.3E-06 58.9 2.5 50 840-890 237-288 (298)
203 PTZ00266 NIMA-related protein 93.1 1.6 3.5E-05 56.0 15.4 11 538-548 424-434 (1021)
204 KOG1103 Predicted coiled-coil 92.9 21 0.00045 40.9 22.5 40 619-658 143-182 (561)
205 PF10168 Nup88: Nuclear pore c 92.9 4.5 9.7E-05 50.4 18.5 30 671-700 632-661 (717)
206 PF05911 DUF869: Plant protein 92.9 6 0.00013 49.6 19.5 101 619-726 607-707 (769)
207 PF10186 Atg14: UV radiation r 92.8 15 0.00032 39.8 20.6 30 683-712 75-104 (302)
208 KOG1814 Predicted E3 ubiquitin 92.8 0.033 7.1E-07 63.6 0.2 36 838-874 180-218 (445)
209 PF09789 DUF2353: Uncharacteri 92.8 16 0.00035 41.4 21.1 143 637-780 10-178 (319)
210 PRK00106 hypothetical protein; 92.7 29 0.00063 42.1 25.3 11 584-594 30-40 (535)
211 KOG4593 Mitotic checkpoint pro 92.7 32 0.0007 42.5 33.6 11 592-602 93-103 (716)
212 PF08614 ATG16: Autophagy prot 92.5 2.3 4.9E-05 44.4 13.3 52 679-730 138-189 (194)
213 KOG3800 Predicted E3 ubiquitin 92.5 0.073 1.6E-06 58.5 2.4 31 858-889 21-51 (300)
214 TIGR00634 recN DNA repair prot 92.4 31 0.00066 41.8 24.3 8 591-598 193-200 (563)
215 KOG0962 DNA repair protein RAD 92.3 50 0.0011 43.7 26.9 48 623-670 865-912 (1294)
216 PF04111 APG6: Autophagy prote 92.2 2.4 5.1E-05 47.8 13.8 39 617-655 45-83 (314)
217 PRK10361 DNA recombination pro 92.2 31 0.00068 41.2 25.7 61 616-676 54-114 (475)
218 KOG3039 Uncharacterized conser 92.2 0.1 2.3E-06 56.1 3.0 48 841-890 220-271 (303)
219 PRK01156 chromosome segregatio 92.1 43 0.00093 42.6 34.6 25 543-567 464-488 (895)
220 KOG0163 Myosin class VI heavy 92.1 27 0.00058 43.6 22.6 19 206-224 428-446 (1259)
221 KOG2660 Locus-specific chromos 92.0 0.043 9.4E-07 61.1 -0.0 54 838-893 11-65 (331)
222 KOG1001 Helicase-like transcri 92.0 0.057 1.2E-06 66.0 0.9 45 843-889 455-500 (674)
223 KOG1002 Nucleotide excision re 91.9 0.057 1.2E-06 63.1 0.7 49 839-888 533-585 (791)
224 KOG0249 LAR-interacting protei 91.8 35 0.00076 42.4 23.1 30 554-584 107-136 (916)
225 PF05911 DUF869: Plant protein 91.7 46 0.001 42.1 26.4 122 626-747 593-714 (769)
226 PTZ00266 NIMA-related protein 91.6 7 0.00015 50.5 18.3 6 857-862 711-716 (1021)
227 PF01576 Myosin_tail_1: Myosin 91.5 0.055 1.2E-06 68.0 0.0 168 550-725 576-755 (859)
228 KOG2129 Uncharacterized conser 91.5 34 0.00073 40.1 24.0 21 674-694 204-224 (552)
229 PF14915 CCDC144C: CCDC144C pr 91.5 28 0.00061 39.2 28.0 185 596-784 37-228 (305)
230 KOG1003 Actin filament-coating 91.5 22 0.00047 37.9 26.6 86 619-704 64-149 (205)
231 PF05557 MAD: Mitotic checkpoi 91.4 0.056 1.2E-06 66.5 0.0 101 570-670 118-219 (722)
232 PF05483 SCP-1: Synaptonemal c 91.3 46 0.001 41.2 32.6 99 617-718 515-613 (786)
233 PF09787 Golgin_A5: Golgin sub 91.1 41 0.00089 40.4 27.4 18 615-632 187-204 (511)
234 PF09304 Cortex-I_coil: Cortex 91.0 7.2 0.00016 37.7 13.5 64 682-745 13-76 (107)
235 PF04156 IncA: IncA protein; 91.0 13 0.00029 38.1 16.8 18 617-634 97-114 (191)
236 TIGR03007 pepcterm_ChnLen poly 90.9 38 0.00083 39.9 22.6 29 568-599 152-180 (498)
237 PF09787 Golgin_A5: Golgin sub 90.8 44 0.00095 40.2 31.0 13 548-560 123-135 (511)
238 PF01576 Myosin_tail_1: Myosin 90.8 0.063 1.4E-06 67.4 -0.4 174 552-738 669-845 (859)
239 PF11559 ADIP: Afadin- and alp 90.8 13 0.00027 37.2 15.9 33 618-650 55-87 (151)
240 PF15066 CAGE1: Cancer-associa 90.7 43 0.00092 39.8 23.4 22 581-602 353-374 (527)
241 PF14662 CCDC155: Coiled-coil 90.5 26 0.00057 37.1 27.2 11 552-562 5-15 (193)
242 PF09738 DUF2051: Double stran 90.5 12 0.00026 42.2 17.0 61 720-780 219-300 (302)
243 PF15035 Rootletin: Ciliary ro 90.4 19 0.00041 37.8 17.3 106 666-774 62-177 (182)
244 KOG0579 Ste20-like serine/thre 90.3 56 0.0012 40.6 32.2 30 648-677 865-894 (1187)
245 KOG1899 LAR transmembrane tyro 90.3 10 0.00022 46.1 16.7 92 621-726 124-215 (861)
246 smart00787 Spc7 Spc7 kinetocho 90.1 38 0.00083 38.4 22.3 38 693-730 205-242 (312)
247 KOG0297 TNF receptor-associate 89.9 0.14 3E-06 59.0 1.4 54 839-894 18-72 (391)
248 COG1340 Uncharacterized archae 89.9 39 0.00084 38.1 30.7 89 690-786 163-251 (294)
249 KOG1937 Uncharacterized conser 89.8 49 0.0011 39.2 21.9 33 754-786 394-426 (521)
250 KOG4364 Chromatin assembly fac 89.8 16 0.00035 44.8 17.9 11 864-874 485-495 (811)
251 PF13851 GAS: Growth-arrest sp 89.7 31 0.00066 36.6 21.9 45 694-738 88-132 (201)
252 PF04849 HAP1_N: HAP1 N-termin 89.6 24 0.00052 39.9 18.2 121 587-738 174-294 (306)
253 KOG2113 Predicted RNA binding 89.4 0.3 6.5E-06 54.3 3.3 55 837-894 338-392 (394)
254 KOG0804 Cytoplasmic Zn-finger 89.0 17 0.00036 42.9 16.8 31 681-711 371-401 (493)
255 KOG2412 Nuclear-export-signal 88.9 19 0.0004 43.4 17.4 57 614-671 181-238 (591)
256 TIGR01005 eps_transp_fam exopo 88.9 14 0.00031 45.9 17.8 11 526-536 155-165 (754)
257 KOG0979 Structural maintenance 88.8 85 0.0018 40.6 28.1 73 639-711 279-358 (1072)
258 COG5175 MOT2 Transcriptional r 88.7 0.28 6.1E-06 54.9 2.5 49 842-891 14-66 (480)
259 KOG4364 Chromatin assembly fac 88.7 19 0.00041 44.2 17.4 11 880-890 486-496 (811)
260 KOG4673 Transcription factor T 88.7 73 0.0016 39.6 32.2 80 617-699 589-676 (961)
261 COG2433 Uncharacterized conser 88.3 12 0.00025 45.6 15.4 47 677-723 421-467 (652)
262 PF06785 UPF0242: Uncharacteri 88.3 53 0.0012 37.6 20.8 130 579-708 77-217 (401)
263 PF09789 DUF2353: Uncharacteri 88.2 53 0.0011 37.5 22.5 88 703-794 130-227 (319)
264 TIGR01000 bacteriocin_acc bact 88.2 61 0.0013 38.1 25.3 14 770-783 305-318 (457)
265 KOG0239 Kinesin (KAR3 subfamil 88.1 33 0.00072 42.7 19.7 57 682-738 224-280 (670)
266 KOG2113 Predicted RNA binding 88.1 0.17 3.7E-06 56.1 0.4 57 838-894 132-188 (394)
267 KOG2114 Vacuolar assembly/sort 87.8 0.7 1.5E-05 57.2 5.3 44 843-891 841-885 (933)
268 KOG4367 Predicted Zn-finger pr 87.8 0.24 5.3E-06 56.8 1.4 34 840-874 2-35 (699)
269 PRK11281 hypothetical protein; 87.8 1.1E+02 0.0023 40.5 26.6 40 614-653 141-180 (1113)
270 PF07058 Myosin_HC-like: Myosi 87.7 16 0.00035 41.1 15.0 70 637-706 67-136 (351)
271 PF05700 BCAS2: Breast carcino 87.6 34 0.00073 36.7 17.2 103 617-743 99-205 (221)
272 PF07111 HCR: Alpha helical co 87.4 88 0.0019 39.1 25.3 12 587-598 478-489 (739)
273 PF09728 Taxilin: Myosin-like 87.3 57 0.0012 36.9 31.7 54 613-666 104-158 (309)
274 COG1842 PspA Phage shock prote 87.3 48 0.001 36.0 18.5 110 621-732 30-139 (225)
275 PF08703 PLC-beta_C: PLC-beta 87.1 44 0.00095 35.4 23.4 22 587-608 18-39 (185)
276 TIGR02977 phageshock_pspA phag 87.0 46 0.001 35.5 18.6 116 620-737 29-144 (219)
277 PF02841 GBP_C: Guanylate-bind 86.9 56 0.0012 36.3 27.3 101 682-783 194-297 (297)
278 KOG0240 Kinesin (SMY1 subfamil 86.7 86 0.0019 38.3 22.1 12 775-786 515-526 (607)
279 PF05622 HOOK: HOOK protein; 86.6 0.2 4.4E-06 61.7 0.0 21 128-148 70-90 (713)
280 PF11932 DUF3450: Protein of u 86.6 41 0.0009 36.4 17.6 52 670-721 34-85 (251)
281 KOG0804 Cytoplasmic Zn-finger 86.6 35 0.00076 40.3 17.5 15 677-691 388-402 (493)
282 KOG4185 Predicted E3 ubiquitin 86.2 0.41 8.8E-06 52.5 2.1 46 842-888 3-54 (296)
283 TIGR03017 EpsF chain length de 86.2 24 0.00053 40.8 16.5 26 620-645 176-201 (444)
284 COG4487 Uncharacterized protei 86.1 81 0.0017 37.4 25.2 25 559-583 39-63 (438)
285 PF09731 Mitofilin: Mitochondr 86.0 90 0.0019 37.8 26.4 42 542-583 245-286 (582)
286 cd07627 BAR_Vps5p The Bin/Amph 85.9 51 0.0011 35.0 29.1 120 615-738 49-182 (216)
287 PF09731 Mitofilin: Mitochondr 85.9 89 0.0019 37.9 21.6 22 216-239 34-55 (582)
288 TIGR03185 DNA_S_dndD DNA sulfu 85.8 99 0.0022 38.2 29.9 30 528-557 149-178 (650)
289 COG5222 Uncharacterized conser 85.7 0.34 7.5E-06 53.5 1.1 43 843-886 275-318 (427)
290 PRK10884 SH3 domain-containing 85.3 15 0.00032 39.3 12.9 23 613-635 91-113 (206)
291 PF03148 Tektin: Tektin family 85.1 82 0.0018 36.6 20.1 72 574-650 215-286 (384)
292 PF15358 TSKS: Testis-specific 84.7 90 0.002 36.7 22.6 62 539-601 101-167 (558)
293 smart00744 RINGv The RING-vari 84.5 0.78 1.7E-05 38.0 2.4 41 844-885 1-49 (49)
294 PF06785 UPF0242: Uncharacteri 84.5 83 0.0018 36.1 21.0 31 621-653 62-92 (401)
295 PF05010 TACC: Transforming ac 84.4 63 0.0014 34.7 25.5 114 663-783 68-181 (207)
296 COG4026 Uncharacterized protei 84.4 22 0.00049 38.5 13.6 80 634-718 103-182 (290)
297 KOG2932 E3 ubiquitin ligase in 84.3 0.25 5.4E-06 54.8 -0.7 47 842-892 90-137 (389)
298 TIGR03752 conj_TIGR03752 integ 84.2 10 0.00022 45.0 12.0 50 623-672 60-109 (472)
299 PF14662 CCDC155: Coiled-coil 84.0 63 0.0014 34.4 23.8 42 677-718 87-128 (193)
300 KOG2991 Splicing regulator [RN 83.9 36 0.00079 37.6 15.1 124 664-789 69-210 (330)
301 KOG2129 Uncharacterized conser 83.9 98 0.0021 36.5 22.3 67 557-623 145-216 (552)
302 PF10146 zf-C4H2: Zinc finger- 83.9 16 0.00034 39.7 12.6 25 863-888 194-218 (230)
303 PF05278 PEARLI-4: Arabidopsis 83.7 72 0.0016 35.6 17.6 36 665-700 222-257 (269)
304 PF02845 CUE: CUE domain; Int 83.6 2 4.4E-05 34.1 4.4 35 213-247 3-37 (42)
305 KOG4593 Mitotic checkpoint pro 83.6 1.3E+02 0.0028 37.6 31.0 24 694-717 239-262 (716)
306 smart00546 CUE Domain that may 83.4 2.1 4.5E-05 34.1 4.4 37 212-248 3-39 (43)
307 TIGR01069 mutS2 MutS2 family p 83.3 30 0.00065 43.7 16.5 19 205-223 240-258 (771)
308 PRK00409 recombination and DNA 83.2 37 0.0008 43.0 17.2 39 205-247 245-283 (782)
309 TIGR00618 sbcc exonuclease Sbc 83.2 1.6E+02 0.0035 38.5 35.5 13 839-851 498-510 (1042)
310 PRK10476 multidrug resistance 82.9 53 0.0012 36.9 16.9 14 528-544 60-73 (346)
311 PF05276 SH3BP5: SH3 domain-bi 82.5 82 0.0018 34.6 27.6 145 572-716 45-208 (239)
312 PF03962 Mnd1: Mnd1 family; I 82.5 21 0.00046 37.5 12.6 57 632-696 72-128 (188)
313 KOG0163 Myosin class VI heavy 82.4 1.5E+02 0.0032 37.5 25.5 12 548-559 774-785 (1259)
314 PRK00409 recombination and DNA 82.4 43 0.00093 42.4 17.3 21 575-595 490-510 (782)
315 PF05262 Borrelia_P83: Borreli 82.3 38 0.00082 40.7 15.9 14 585-598 179-192 (489)
316 PF07321 YscO: Type III secret 82.2 64 0.0014 33.1 21.0 39 693-731 75-113 (152)
317 PF11932 DUF3450: Protein of u 82.0 81 0.0018 34.2 18.7 30 686-715 71-100 (251)
318 PF10272 Tmpp129: Putative tra 81.8 1.2 2.7E-05 50.9 3.5 48 842-889 271-351 (358)
319 PF15290 Syntaphilin: Golgi-lo 81.3 38 0.00083 37.9 14.3 98 688-786 71-168 (305)
320 PF08614 ATG16: Autophagy prot 81.3 24 0.00052 36.9 12.6 80 636-715 67-146 (194)
321 PF07800 DUF1644: Protein of u 81.3 0.84 1.8E-05 46.6 1.7 54 842-895 2-97 (162)
322 PRK10929 putative mechanosensi 81.2 2E+02 0.0043 38.2 27.2 14 618-631 105-118 (1109)
323 PF05557 MAD: Mitotic checkpoi 81.2 1.4 3.1E-05 54.4 4.1 104 550-657 307-420 (722)
324 PF10212 TTKRSYEDQ: Predicted 81.2 46 0.001 40.1 16.0 66 618-711 416-481 (518)
325 KOG0288 WD40 repeat protein Ti 81.1 79 0.0017 37.2 17.2 58 619-676 10-67 (459)
326 PF15556 Zwint: ZW10 interacto 81.1 85 0.0018 33.8 19.6 39 677-715 133-171 (252)
327 PF05010 TACC: Transforming ac 81.1 85 0.0018 33.8 25.9 57 617-676 46-102 (207)
328 COG3883 Uncharacterized protei 80.7 1E+02 0.0022 34.4 19.0 125 660-784 34-190 (265)
329 PF10367 Vps39_2: Vacuolar sor 80.5 2.7 5.9E-05 38.7 4.7 32 839-871 75-108 (109)
330 TIGR03007 pepcterm_ChnLen poly 80.4 1.3E+02 0.0028 35.5 23.3 73 565-643 160-232 (498)
331 PF15369 KIAA1328: Uncharacter 80.3 16 0.00035 41.4 11.3 87 580-712 8-95 (328)
332 smart00502 BBC B-Box C-termina 80.2 51 0.0011 30.7 15.6 59 619-677 4-62 (127)
333 COG5219 Uncharacterized conser 80.1 0.8 1.7E-05 57.1 1.4 51 839-890 1466-1524(1525)
334 PF09744 Jnk-SapK_ap_N: JNK_SA 80.1 77 0.0017 32.7 15.6 17 633-649 47-63 (158)
335 KOG2264 Exostosin EXT1L [Signa 80.1 13 0.00028 44.8 10.9 54 679-732 94-147 (907)
336 TIGR01541 tape_meas_lam_C phag 80.0 1.2E+02 0.0026 34.8 23.9 30 551-583 4-33 (332)
337 PRK15136 multidrug efflux syst 79.9 46 0.00099 38.4 15.4 38 677-714 143-180 (390)
338 TIGR00618 sbcc exonuclease Sbc 79.6 2.1E+02 0.0045 37.4 33.9 41 543-583 162-204 (1042)
339 COG4717 Uncharacterized conser 79.6 2E+02 0.0042 37.1 28.0 29 677-705 688-717 (984)
340 TIGR02894 DNA_bind_RsfA transc 79.1 48 0.001 34.3 13.3 46 679-724 98-143 (161)
341 PF05622 HOOK: HOOK protein; 79.1 1.4 3.1E-05 54.4 3.2 38 537-585 119-156 (713)
342 KOG2398 Predicted proline-seri 78.9 1.7E+02 0.0036 36.4 20.2 51 690-740 137-187 (611)
343 KOG2002 TPR-containing nuclear 78.7 1.6E+02 0.0034 38.3 19.9 69 544-612 659-742 (1018)
344 TIGR01069 mutS2 MutS2 family p 78.7 55 0.0012 41.4 16.5 22 574-595 484-505 (771)
345 PRK11519 tyrosine kinase; Prov 78.6 1.9E+02 0.0041 36.3 21.3 34 564-600 254-287 (719)
346 KOG4572 Predicted DNA-binding 78.6 2E+02 0.0044 36.7 25.2 42 685-726 995-1036(1424)
347 PRK10884 SH3 domain-containing 78.4 37 0.00079 36.4 12.9 16 526-542 66-81 (206)
348 PF10146 zf-C4H2: Zinc finger- 78.3 78 0.0017 34.5 15.5 11 841-851 193-203 (230)
349 PF07106 TBPIP: Tat binding pr 78.3 25 0.00054 35.8 11.3 40 613-652 70-109 (169)
350 PRK13460 F0F1 ATP synthase sub 78.3 81 0.0018 32.4 15.0 10 773-782 130-139 (173)
351 KOG4360 Uncharacterized coiled 78.2 1.7E+02 0.0036 35.5 19.4 45 668-712 202-246 (596)
352 CHL00019 atpF ATP synthase CF0 78.2 79 0.0017 32.7 15.1 24 677-700 61-84 (184)
353 KOG4360 Uncharacterized coiled 78.2 1.2E+02 0.0027 36.6 17.8 62 677-738 232-293 (596)
354 KOG4661 Hsp27-ERE-TATA-binding 78.1 22 0.00048 42.9 11.9 15 135-149 161-175 (940)
355 PF06818 Fez1: Fez1; InterPro 78.0 1E+02 0.0023 33.1 19.2 42 677-718 65-106 (202)
356 PF13904 DUF4207: Domain of un 77.9 1.2E+02 0.0026 33.6 17.7 19 565-583 87-105 (264)
357 PF10234 Cluap1: Clusterin-ass 77.9 1.2E+02 0.0027 33.8 17.1 118 582-717 140-264 (267)
358 KOG1428 Inhibitor of type V ad 77.5 1.3 2.8E-05 57.3 2.0 53 838-891 3482-3546(3738)
359 COG1340 Uncharacterized archae 77.5 1.3E+02 0.0029 34.0 30.0 76 640-715 135-216 (294)
360 PF02050 FliJ: Flagellar FliJ 77.4 58 0.0013 29.8 15.9 35 678-712 45-79 (123)
361 KOG2891 Surface glycoprotein [ 77.4 1.3E+02 0.0028 33.8 20.1 17 579-595 287-303 (445)
362 TIGR02473 flagell_FliJ flagell 77.4 72 0.0016 30.8 18.5 37 679-715 62-98 (141)
363 PRK07352 F0F1 ATP synthase sub 77.4 84 0.0018 32.2 14.8 37 673-709 52-88 (174)
364 PF10473 CENP-F_leu_zip: Leuci 77.2 88 0.0019 31.8 19.9 43 677-719 72-114 (140)
365 KOG4787 Uncharacterized conser 77.1 1.9E+02 0.0042 35.6 20.9 100 684-786 436-545 (852)
366 TIGR03017 EpsF chain length de 77.0 1.5E+02 0.0033 34.4 24.0 66 564-632 158-232 (444)
367 PF07246 Phlebovirus_NSM: Phle 76.9 17 0.00036 40.2 10.0 88 544-644 151-238 (264)
368 PF04710 Pellino: Pellino; In 76.6 0.81 1.7E-05 52.6 0.0 55 841-896 327-411 (416)
369 KOG4445 Uncharacterized conser 76.6 0.83 1.8E-05 50.7 0.1 50 839-889 112-186 (368)
370 KOG1103 Predicted coiled-coil 76.5 57 0.0012 37.5 14.1 36 681-716 142-177 (561)
371 KOG4403 Cell surface glycoprot 76.4 71 0.0015 37.7 15.0 13 630-642 236-248 (575)
372 PF14992 TMCO5: TMCO5 family 76.2 1.4E+02 0.003 33.6 19.9 11 637-647 33-43 (280)
373 KOG3842 Adaptor protein Pellin 76.1 2.4 5.1E-05 47.5 3.4 55 840-896 339-424 (429)
374 PF02841 GBP_C: Guanylate-bind 76.1 1.4E+02 0.0029 33.4 22.6 35 544-578 92-126 (297)
375 KOG1734 Predicted RING-contain 75.9 1 2.2E-05 49.5 0.5 50 839-889 221-281 (328)
376 PRK06231 F0F1 ATP synthase sub 75.7 95 0.002 33.1 15.1 24 677-700 85-108 (205)
377 PF13094 CENP-Q: CENP-Q, a CEN 75.1 23 0.0005 35.8 10.0 71 665-735 21-91 (160)
378 PRK14474 F0F1 ATP synthase sub 75.1 89 0.0019 34.3 15.1 40 671-710 36-75 (250)
379 PF15619 Lebercilin: Ciliary p 75.0 1.2E+02 0.0026 32.2 26.1 12 555-566 12-23 (194)
380 TIGR02231 conserved hypothetic 74.9 22 0.00048 42.5 11.4 27 683-709 129-155 (525)
381 COG1566 EmrA Multidrug resista 74.7 81 0.0018 36.5 15.2 36 620-655 89-124 (352)
382 KOG0244 Kinesin-like protein [ 74.5 2.7E+02 0.0058 36.1 20.8 94 613-707 507-601 (913)
383 PRK15422 septal ring assembly 74.5 49 0.0011 30.5 10.6 59 678-736 11-69 (79)
384 PF07798 DUF1640: Protein of u 74.2 1.1E+02 0.0024 31.6 21.4 76 697-772 71-147 (177)
385 PF12325 TMF_TATA_bd: TATA ele 74.1 95 0.0021 30.7 14.2 31 685-715 23-53 (120)
386 TIGR01010 BexC_CtrB_KpsE polys 74.1 53 0.0011 37.3 13.6 32 618-649 173-204 (362)
387 PF09304 Cortex-I_coil: Cortex 74.0 91 0.002 30.4 15.4 50 678-727 44-93 (107)
388 PF06818 Fez1: Fez1; InterPro 74.0 1.3E+02 0.0029 32.3 18.7 47 609-655 57-106 (202)
389 KOG4677 Golgi integral membran 73.9 2E+02 0.0044 34.4 21.9 33 696-728 320-352 (554)
390 PRK08475 F0F1 ATP synthase sub 73.9 1.1E+02 0.0024 31.4 14.6 17 677-693 59-75 (167)
391 PRK10869 recombination and rep 73.8 2.2E+02 0.0048 34.7 22.3 220 546-786 138-371 (553)
392 PF08826 DMPK_coil: DMPK coile 73.8 50 0.0011 29.1 10.2 54 690-743 2-55 (61)
393 PRK06568 F0F1 ATP synthase sub 73.6 1.1E+02 0.0025 31.3 15.1 26 676-701 40-65 (154)
394 KOG2817 Predicted E3 ubiquitin 73.6 2.5 5.4E-05 48.7 2.9 55 840-896 332-394 (394)
395 COG4026 Uncharacterized protei 73.5 60 0.0013 35.4 12.7 51 675-725 153-203 (290)
396 PF15397 DUF4618: Domain of un 73.4 1.6E+02 0.0034 32.9 21.9 146 596-741 62-228 (258)
397 PRK13453 F0F1 ATP synthase sub 73.4 1.2E+02 0.0025 31.3 15.0 37 672-708 50-86 (173)
398 PF06005 DUF904: Protein of un 73.3 57 0.0012 29.4 10.8 24 630-653 12-35 (72)
399 KOG4196 bZIP transcription fac 73.3 43 0.00092 33.6 10.7 39 681-719 77-115 (135)
400 PF05103 DivIVA: DivIVA protei 73.3 1.7 3.6E-05 41.9 1.2 59 680-738 27-85 (131)
401 PRK06231 F0F1 ATP synthase sub 73.1 1.1E+02 0.0024 32.5 14.8 7 822-828 192-198 (205)
402 PF10267 Tmemb_cc2: Predicted 72.8 1.7E+02 0.0037 34.5 17.3 83 638-726 221-304 (395)
403 PF05290 Baculo_IE-1: Baculovi 72.8 2.2 4.7E-05 42.6 1.9 51 841-892 79-135 (140)
404 PF04949 Transcrip_act: Transc 72.8 1.2E+02 0.0026 31.2 18.1 91 546-646 25-115 (159)
405 PF11789 zf-Nse: Zinc-finger o 72.6 2.9 6.3E-05 35.8 2.4 44 839-883 8-53 (57)
406 PF06637 PV-1: PV-1 protein (P 72.6 1.8E+02 0.0039 34.1 16.8 109 616-734 282-391 (442)
407 KOG1899 LAR transmembrane tyro 72.3 59 0.0013 40.0 13.5 20 686-705 126-145 (861)
408 PF08172 CASP_C: CASP C termin 72.3 19 0.0004 39.6 9.0 35 617-651 1-35 (248)
409 PLN02939 transferase, transfer 71.2 3.3E+02 0.0072 35.7 24.5 24 639-662 229-252 (977)
410 PRK14472 F0F1 ATP synthase sub 71.1 1.3E+02 0.0028 30.9 14.8 32 676-707 54-85 (175)
411 PF10498 IFT57: Intra-flagella 71.0 2.1E+02 0.0045 33.3 18.3 12 593-604 219-230 (359)
412 PF10212 TTKRSYEDQ: Predicted 70.7 1.8E+02 0.0038 35.4 17.0 31 756-786 473-503 (518)
413 PRK10698 phage shock protein P 70.7 1.6E+02 0.0035 31.8 18.6 48 690-737 97-144 (222)
414 PRK10476 multidrug resistance 70.5 1.9E+02 0.0041 32.6 17.2 22 690-711 150-171 (346)
415 TIGR03321 alt_F1F0_F0_B altern 70.5 1.3E+02 0.0029 32.6 15.1 40 671-710 36-75 (246)
416 PF03904 DUF334: Domain of unk 70.3 1.7E+02 0.0037 32.0 17.6 20 597-616 8-27 (230)
417 PRK14472 F0F1 ATP synthase sub 70.3 1.3E+02 0.0029 30.8 15.1 33 683-715 47-79 (175)
418 PRK03598 putative efflux pump 70.2 86 0.0019 35.0 14.0 30 683-712 136-165 (331)
419 cd07623 BAR_SNX1_2 The Bin/Amp 70.2 1.6E+02 0.0035 31.6 29.2 76 662-737 107-187 (224)
420 PLN03188 kinesin-12 family pro 70.1 3.9E+02 0.0084 36.0 26.8 25 618-642 1096-1120(1320)
421 KOG1645 RING-finger-containing 70.0 3.1 6.7E-05 48.1 2.5 46 841-887 3-54 (463)
422 KOG3478 Prefoldin subunit 6, K 70.0 1.2E+02 0.0025 29.9 13.5 42 668-709 73-114 (120)
423 PRK07352 F0F1 ATP synthase sub 70.0 1.4E+02 0.003 30.7 15.1 32 684-715 49-80 (174)
424 PF12777 MT: Microtubule-bindi 69.8 72 0.0016 36.4 13.4 44 672-715 2-45 (344)
425 PF09744 Jnk-SapK_ap_N: JNK_SA 69.8 1.4E+02 0.0031 30.8 16.1 33 712-744 77-109 (158)
426 PF14197 Cep57_CLD_2: Centroso 69.5 25 0.00055 31.4 7.6 59 572-651 11-69 (69)
427 PF04912 Dynamitin: Dynamitin 69.4 1.9E+02 0.0042 33.5 16.9 32 599-633 248-279 (388)
428 PF05278 PEARLI-4: Arabidopsis 69.3 2E+02 0.0043 32.3 16.0 10 548-557 129-138 (269)
429 PRK14474 F0F1 ATP synthase sub 69.3 1.4E+02 0.0029 32.8 14.8 17 707-723 91-107 (250)
430 TIGR01010 BexC_CtrB_KpsE polys 69.0 2.1E+02 0.0046 32.5 17.2 31 566-596 170-200 (362)
431 PF11180 DUF2968: Protein of u 68.9 1.2E+02 0.0027 32.2 13.7 41 669-709 145-185 (192)
432 TIGR01541 tape_meas_lam_C phag 68.9 2E+02 0.0043 33.0 16.5 18 620-637 8-25 (332)
433 KOG2751 Beclin-like protein [S 68.4 1.5E+02 0.0033 35.2 15.4 39 669-707 188-226 (447)
434 PRK06568 F0F1 ATP synthase sub 68.1 1.5E+02 0.0033 30.5 14.8 26 713-738 56-81 (154)
435 KOG3161 Predicted E3 ubiquitin 68.1 1.9 4.2E-05 52.0 0.5 38 841-882 10-51 (861)
436 COG3064 TolA Membrane protein 68.0 2E+02 0.0043 33.0 15.7 24 670-693 93-116 (387)
437 CHL00019 atpF ATP synthase CF0 68.0 1.6E+02 0.0034 30.6 14.8 6 775-780 140-145 (184)
438 PRK13455 F0F1 ATP synthase sub 67.8 1.6E+02 0.0034 30.6 14.8 29 677-705 64-92 (184)
439 PF02050 FliJ: Flagellar FliJ 67.2 1E+02 0.0022 28.2 16.9 36 680-715 54-89 (123)
440 PF12037 DUF3523: Domain of un 67.2 2.2E+02 0.0048 32.1 24.7 12 573-584 35-46 (276)
441 KOG0742 AAA+-type ATPase [Post 67.1 2.8E+02 0.0061 33.3 23.2 18 756-773 244-261 (630)
442 COG3206 GumC Uncharacterized p 67.0 2.6E+02 0.0057 32.9 23.3 19 584-602 199-217 (458)
443 PF12761 End3: Actin cytoskele 66.8 27 0.00059 37.1 8.5 25 679-703 168-192 (195)
444 PRK14475 F0F1 ATP synthase sub 66.8 1.6E+02 0.0034 30.2 15.0 7 774-780 125-131 (167)
445 PF06008 Laminin_I: Laminin Do 66.6 2E+02 0.0044 31.4 22.3 170 617-786 26-208 (264)
446 KOG0993 Rab5 GTPase effector R 66.6 2.3E+02 0.0049 33.6 16.1 47 617-663 19-65 (542)
447 KOG0826 Predicted E3 ubiquitin 66.4 3.5 7.7E-05 46.5 2.1 56 839-896 297-355 (357)
448 PF05546 She9_MDM33: She9 / Md 66.2 2E+02 0.0043 31.1 20.3 140 561-733 4-147 (207)
449 PF07794 DUF1633: Protein of u 66.1 2.6E+02 0.0055 33.9 16.6 141 552-694 513-676 (790)
450 COG3074 Uncharacterized protei 66.0 97 0.0021 28.1 10.3 55 679-733 12-66 (79)
451 PF04949 Transcrip_act: Transc 65.7 1.7E+02 0.0037 30.2 17.7 80 667-746 48-131 (159)
452 PF10226 DUF2216: Uncharacteri 65.6 1.9E+02 0.0042 30.9 15.5 45 671-715 94-138 (195)
453 PF12252 SidE: Dot/Icm substra 65.5 1.1E+02 0.0024 39.9 14.3 102 551-652 1017-1147(1439)
454 PF09755 DUF2046: Uncharacteri 65.5 2.5E+02 0.0054 32.1 30.6 89 606-695 104-202 (310)
455 PF03962 Mnd1: Mnd1 family; I 65.4 85 0.0018 33.1 11.9 31 682-712 66-96 (188)
456 PRK09841 cryptic autophosphory 65.4 3.4E+02 0.0073 34.2 19.0 28 618-645 270-297 (726)
457 PF09325 Vps5: Vps5 C terminal 65.4 1.8E+02 0.004 30.5 25.7 42 547-589 23-64 (236)
458 COG4913 Uncharacterized protei 65.1 3.8E+02 0.0083 34.1 20.5 63 672-734 664-726 (1104)
459 PRK13428 F0F1 ATP synthase sub 65.1 1.5E+02 0.0032 35.3 15.1 36 671-706 32-67 (445)
460 PF13166 AAA_13: AAA domain 65.0 3.4E+02 0.0074 33.5 27.4 17 558-574 283-299 (712)
461 PF12777 MT: Microtubule-bindi 64.9 22 0.00047 40.5 8.0 39 681-719 259-297 (344)
462 PLN02939 transferase, transfer 64.9 4.4E+02 0.0095 34.7 26.8 20 765-784 378-397 (977)
463 PF00901 Orbi_VP5: Orbivirus o 64.8 2.8E+02 0.0061 33.5 16.9 59 721-780 141-200 (508)
464 TIGR02449 conserved hypothetic 64.8 60 0.0013 28.9 8.9 50 628-705 6-55 (65)
465 PF05529 Bap31: B-cell recepto 64.8 56 0.0012 33.9 10.4 31 637-667 119-149 (192)
466 PRK05689 fliJ flagellar biosyn 64.7 1.5E+02 0.0033 29.3 18.0 34 679-712 65-98 (147)
467 PRK10636 putative ABC transpor 64.7 49 0.0011 40.7 11.5 56 676-731 568-630 (638)
468 PF04216 FdhE: Protein involve 64.3 4.8 0.0001 44.5 2.6 54 840-895 170-228 (290)
469 KOG0993 Rab5 GTPase effector R 64.3 3E+02 0.0066 32.6 22.5 58 581-643 303-366 (542)
470 KOG1760 Molecular chaperone Pr 64.3 56 0.0012 32.6 9.4 69 586-657 36-116 (131)
471 PRK13455 F0F1 ATP synthase sub 64.2 1.8E+02 0.004 30.0 15.0 30 683-712 56-85 (184)
472 PF12252 SidE: Dot/Icm substra 64.1 4.6E+02 0.01 34.7 21.6 120 617-741 1233-1354(1439)
473 TIGR03321 alt_F1F0_F0_B altern 64.0 2E+02 0.0044 31.2 14.8 10 819-828 191-200 (246)
474 KOG1962 B-cell receptor-associ 63.9 1.1E+02 0.0025 33.1 12.5 18 729-746 181-198 (216)
475 PRK11519 tyrosine kinase; Prov 63.8 1.9E+02 0.0041 36.3 16.4 32 617-648 269-300 (719)
476 PF05883 Baculo_RING: Baculovi 63.7 5 0.00011 40.2 2.3 33 842-874 26-66 (134)
477 PF14362 DUF4407: Domain of un 63.6 2.4E+02 0.0053 31.3 17.4 65 582-655 96-161 (301)
478 KOG3915 Transcription regulato 63.5 71 0.0015 38.0 11.6 34 703-736 546-579 (641)
479 PF15290 Syntaphilin: Golgi-lo 63.3 67 0.0015 36.0 10.9 21 766-786 120-140 (305)
480 PF02318 FYVE_2: FYVE-type zin 63.1 3.2 6.9E-05 40.2 0.8 45 841-886 53-102 (118)
481 KOG4460 Nuclear pore complex, 63.1 2E+02 0.0042 35.3 15.2 148 664-830 573-721 (741)
482 KOG2072 Translation initiation 63.0 4.4E+02 0.0094 34.0 32.5 11 203-213 247-257 (988)
483 PF15456 Uds1: Up-regulated Du 62.9 1.1E+02 0.0024 30.4 11.4 78 597-703 22-113 (124)
484 PF06248 Zw10: Centromere/kine 62.6 2.9E+02 0.0064 33.7 17.4 156 547-745 13-168 (593)
485 cd00632 Prefoldin_beta Prefold 62.6 1.2E+02 0.0025 28.7 11.2 92 552-661 3-102 (105)
486 smart00502 BBC B-Box C-termina 62.5 1.3E+02 0.0029 27.9 13.7 102 686-793 1-102 (127)
487 PF14988 DUF4515: Domain of un 62.1 2.3E+02 0.0049 30.4 23.1 166 543-720 35-205 (206)
488 COG2882 FliJ Flagellar biosynt 61.9 2E+02 0.0042 29.6 19.1 126 607-749 8-135 (148)
489 PF13863 DUF4200: Domain of un 61.8 1.5E+02 0.0033 28.4 15.9 105 679-783 1-108 (126)
490 PF14073 Cep57_CLD: Centrosome 61.8 2.2E+02 0.0047 30.2 19.8 140 590-730 12-172 (178)
491 PF06156 DUF972: Protein of un 61.7 51 0.0011 31.9 8.6 55 673-727 3-57 (107)
492 PF15397 DUF4618: Domain of un 61.5 2.7E+02 0.0058 31.1 28.9 215 571-794 3-231 (258)
493 PRK14473 F0F1 ATP synthase sub 61.2 1.9E+02 0.0041 29.3 15.0 96 687-782 34-131 (164)
494 PRK13428 F0F1 ATP synthase sub 61.1 1.8E+02 0.0039 34.5 14.8 95 669-772 30-124 (445)
495 PF14197 Cep57_CLD_2: Centroso 61.0 92 0.002 27.9 9.5 67 620-686 3-69 (69)
496 PRK14475 F0F1 ATP synthase sub 60.8 2E+02 0.0043 29.4 14.8 95 669-772 39-133 (167)
497 KOG4661 Hsp27-ERE-TATA-binding 60.8 1.7E+02 0.0036 35.9 14.1 106 629-746 595-700 (940)
498 PF12240 Angiomotin_C: Angiomo 60.6 2.5E+02 0.0054 30.4 15.5 141 576-728 2-165 (205)
499 KOG4657 Uncharacterized conser 60.6 2.6E+02 0.0057 30.7 15.8 108 635-754 44-151 (246)
500 COG5194 APC11 Component of SCF 60.6 6.9 0.00015 36.1 2.4 44 844-889 33-81 (88)
No 1
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.7e-17 Score=190.03 Aligned_cols=294 Identities=17% Similarity=0.282 Sum_probs=198.0
Q ss_pred ccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHH--HHHHHhHHHHHHHHHHH-HHhHHHhhh
Q 002627 539 HLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAEL--KTLRQEKEEVERLKKEK-QILEENTMK 615 (899)
Q Consensus 539 ~~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eL--k~LR~EkEe~eRlkk~k-~~lee~t~k 615 (899)
.-+|.+.+|++=.++..-+-.+-.++..|.+=...+.-+ ...|..+. ..+=.++++.++.-++- .++.|..-.
T Consensus 384 k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k----~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~ 459 (698)
T KOG0978|consen 384 KSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRK----QALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETI 459 (698)
T ss_pred hCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777788777677777777777777776543333221 22222211 01112223333222221 222222111
Q ss_pred --hHHHHHHHHHHhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 616 --KLSEMENALCKASGQVERANSAVRR--------------LEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMK 679 (899)
Q Consensus 616 --kL~e~E~al~kas~Q~~ra~~~vr~--------------lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~ 679 (899)
-..+|+..+.++.-|++.++-..++ |+.+...+..++-..+.++.--...+..+-++++.+...
T Consensus 460 gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~ 539 (698)
T KOG0978|consen 460 GSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSN 539 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 1555666666666666555555554 445555555556666666666667778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 002627 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKS 759 (899)
Q Consensus 680 l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~ 759 (899)
....+++...++.-|+..+.+..++.+.+.+++...+..++++.+.+....+....++.+++.+.++|+
T Consensus 540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE----------- 608 (698)
T KOG0978|consen 540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE----------- 608 (698)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999888888887777776665555544
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHhccCCCCCCccccccccccccCCchhHHHHHHhhccCCCCCCcc
Q 002627 760 KAETNLMRYKDDIHRLEKEISQLRLKTDSSKIAALRRGIDGSYAGRLTDIKSSSVHKESQTPLISEVMKDYHDFSGTGGV 839 (899)
Q Consensus 760 K~E~E~qr~k~dikrLEqElsrLr~k~d~~RrAaL~~g~d~sy~~~~~~q~~~~~~k~~Q~~~iqelL~~ie~~~E~~~l 839 (899)
++.+|...+++++.... ....++.|.+ ++..+
T Consensus 609 -----------E~e~L~~kle~~k~~~~--------------------------------~~s~d~~L~E-----Elk~y 640 (698)
T KOG0978|consen 609 -----------ELERLKRKLERLKKEES--------------------------------GASADEVLAE-----ELKEY 640 (698)
T ss_pred -----------HHHHHHHHHHHhccccc--------------------------------cccccHHHHH-----HHHHH
Confidence 34444454444432220 0011222222 34567
Q ss_pred ccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCccccc--ceEeEEe
Q 002627 840 KRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ--RRIPVRY 896 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~--~~irVf~ 896 (899)
.....|++|.++++++|+..|||+ ||..|+..+...++++||.|+.+|+ ++++||+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence 788999999999999999999999 9999999999999999999999998 6888874
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.4e-13 Score=144.99 Aligned_cols=98 Identities=26% Similarity=0.474 Sum_probs=75.1
Q ss_pred ccCCCCCCccccccccccccCCchhHHHHHHhhccCCCC---CCccccccccccccccccceEEecCCCcccChhhHHHh
Q 002627 797 GIDGSYAGRLTDIKSSSVHKESQTPLISEVMKDYHDFSG---TGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELH 873 (899)
Q Consensus 797 g~d~sy~~~~~~q~~~~~~k~~Q~~~iqelL~~ie~~~E---~~~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l 873 (899)
..++++.....+|+.|++. ..+.++|++..-+...+ .+..++..+||||+++.++++++||+|+|+|..|++.+
T Consensus 245 ~~~G~~~~~~~kQ~~~v~g---~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L 321 (349)
T KOG4265|consen 245 DEKGSIKIKVLKQILWVDG---TRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSL 321 (349)
T ss_pred CcCCceeeeeeeeEEEEeC---ceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHH
Confidence 3457888888899988875 34556666642111111 11335678999999999999999999999999999998
Q ss_pred hhcCCCCCCCCcccccceEeEEecC
Q 002627 874 EKQGMKDCPSCRSPIQRRIPVRYAR 898 (899)
Q Consensus 874 ~~~~~~kCPiCR~~I~~~irVf~a~ 898 (899)
+.+. +.||+||++|...+.|+...
T Consensus 322 r~q~-n~CPICRqpi~~ll~i~~~~ 345 (349)
T KOG4265|consen 322 RYQT-NNCPICRQPIEELLEIYVNK 345 (349)
T ss_pred HHhh-cCCCccccchHhhheecccc
Confidence 7553 68999999999999998754
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-11 Score=102.72 Aligned_cols=54 Identities=30% Similarity=0.671 Sum_probs=50.0
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeEEe
Q 002627 843 RECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRY 896 (899)
Q Consensus 843 ~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irVf~ 896 (899)
.+|.||++.+.+.|+.-|||+|+|+.|..++.......||+||++|.++|+.|-
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 679999999999999999999999999998877667899999999999998874
No 4
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.98 E-value=2.8e-10 Score=92.86 Aligned_cols=49 Identities=41% Similarity=0.933 Sum_probs=42.5
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccce
Q 002627 842 ERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 842 ~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ 891 (899)
+..|.||++...+++++||||.+||..|+..+.. ...+||+||++|.++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcCC
Confidence 4679999999999999999999999999999876 457999999999864
No 5
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.3e-08 Score=112.30 Aligned_cols=55 Identities=35% Similarity=0.735 Sum_probs=49.1
Q ss_pred ccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeEEec
Q 002627 838 GVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYA 897 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irVf~a 897 (899)
+......|+||.+++.+++|+||||+|+|..|...+ ..||+||..|...+++|.+
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l-----~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL-----PQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhhC-----CCCchhHHHHHHHHHHhcC
Confidence 445567899999999999999999999999999975 5799999999999998863
No 6
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.5e-09 Score=111.89 Aligned_cols=51 Identities=37% Similarity=0.865 Sum_probs=47.4
Q ss_pred cccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeEEe
Q 002627 841 RERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRY 896 (899)
Q Consensus 841 ~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irVf~ 896 (899)
...+|.|||+.+++.+|++|||++.|..|-.. +..|||||+.|..+++||.
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHHHHHHhhhc
Confidence 37899999999999999999999999999985 4699999999999999985
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.34 E-value=3.9e-07 Score=94.03 Aligned_cols=58 Identities=22% Similarity=0.527 Sum_probs=47.4
Q ss_pred ccccccccccccccccceEEecCCCcccChhhHHHhhhc---------------CCCCCCCCccccc--ceEeEEe
Q 002627 838 GVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQ---------------GMKDCPSCRSPIQ--RRIPVRY 896 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~---------------~~~kCPiCR~~I~--~~irVf~ 896 (899)
+......|.||++...+.++++|||. ||..|+..|... ....||+||.+|. .++.||.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 44566889999999999999999999 999999887531 2358999999997 4677764
No 8
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4e-07 Score=95.42 Aligned_cols=47 Identities=38% Similarity=0.957 Sum_probs=43.7
Q ss_pred cccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeEEe
Q 002627 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRY 896 (899)
Q Consensus 845 CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irVf~ 896 (899)
|..|..+...++++||.|+|+|..|... ...||+|+.++...+.||+
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-----LRICPICRSPKTSSVEVNF 207 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-----CccCCCCcChhhceeeccC
Confidence 9999999999999999999999999984 3689999999999999885
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.24 E-value=0.0027 Score=80.30 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 002627 774 RLEKEISQLR 783 (899)
Q Consensus 774 rLEqElsrLr 783 (899)
.++.++..++
T Consensus 466 ~~~~~l~~~~ 475 (1164)
T TIGR02169 466 KYEQELYDLK 475 (1164)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.5e-07 Score=91.36 Aligned_cols=53 Identities=26% Similarity=0.597 Sum_probs=43.0
Q ss_pred ccccccccccccc--eEEecCCCcccChhhHHHhhhcCCCCCCCCccccc--ceEeEEe
Q 002627 842 ERECVMCLSEEMS--VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ--RRIPVRY 896 (899)
Q Consensus 842 ~~~CvIC~d~~~~--vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~--~~irVf~ 896 (899)
-..|+|||+.... .+-..|||+ ||..|+....+. ..+||+||..|+ .+++||+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKN-TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHh-CCCCCCcccccchhhheeccC
Confidence 3679999997544 344799999 999999987764 479999998877 6888885
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.18 E-value=1.3e-06 Score=93.14 Aligned_cols=55 Identities=27% Similarity=0.829 Sum_probs=44.5
Q ss_pred ccccccccccccccc--------eEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeEEe
Q 002627 840 KRERECVMCLSEEMS--------VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRY 896 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~--------vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irVf~ 896 (899)
.....|.||++...+ .++.+|+|. ||..|...|... ...||+||.+|..+++..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~-~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKE-KNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhc-CCCCCCCCCEeeEEeeeee
Confidence 446789999996432 466789998 999999998764 5799999999998887643
No 12
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.00067 Score=81.02 Aligned_cols=109 Identities=28% Similarity=0.253 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 593 RQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (899)
Q Consensus 593 R~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ek 672 (899)
++||||.+|-.++. -|+.||+-.|+|..|.+ ..-..|..|-|...-+.+|||+|.+-..+ ..+++
T Consensus 349 qkEreE~ekkerer---qEqErk~qlElekqLer-------QReiE~qrEEerkkeie~rEaar~ElEkq-----Rqlew 413 (1118)
T KOG1029|consen 349 QKEREEEEKKERER---QEQERKAQLELEKQLER-------QREIERQREEERKKEIERREAAREELEKQ-----RQLEW 413 (1118)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 45555544433332 24567777777775544 32222333323333334555555433222 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (899)
Q Consensus 673 Ekk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE 719 (899)
|+ .|++.+-.|+.+-|+.+-.++.|..+++++|+-+...+.++.
T Consensus 414 Er---ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 414 ER---ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 344445555555555555555555555555555544444444
No 13
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.2e-06 Score=94.65 Aligned_cols=50 Identities=28% Similarity=0.672 Sum_probs=44.0
Q ss_pred ccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccce
Q 002627 840 KRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ 891 (899)
.....|++|+++..+...+||||. ||..|+..|.... ..||.||.++...
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek-~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEK-AECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccc-cCCCcccccCCCc
Confidence 455899999999999999999999 9999999998754 6899999998743
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.13 E-value=1.3e-06 Score=68.00 Aligned_cols=38 Identities=37% Similarity=0.884 Sum_probs=32.9
Q ss_pred cccccccccce-EEecCCCcccChhhHHHhhhcCCCCCCCC
Q 002627 845 CVMCLSEEMSV-VFLPCAHQVVCTTCNELHEKQGMKDCPSC 884 (899)
Q Consensus 845 CvIC~d~~~~v-vllPCgH~~~C~~Ca~~l~~~~~~kCPiC 884 (899)
|+||++...+. ++++|||. ||..|+..+... ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHC-cCCCcCC
Confidence 89999999888 78999999 999999999877 6899998
No 15
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.11 E-value=0.021 Score=69.93 Aligned_cols=163 Identities=23% Similarity=0.223 Sum_probs=109.8
Q ss_pred CCcccCcCcccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHH
Q 002627 528 AGILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQ 607 (899)
Q Consensus 528 ~~~~~d~~~~~~~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~ 607 (899)
.-.|.+ .++ +|.+|..|.-|.+.+..+..++---+.=|+-.+-|...+|.-.--+|.--+.+.++ +
T Consensus 319 ~~~~~~-~sq-----kd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe--------~ 384 (980)
T KOG0980|consen 319 ASDPPN-ASQ-----KDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQE--------N 384 (980)
T ss_pred ccCCcc-ccc-----CChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------H
Confidence 334555 555 29999999999999999999998888888888888888776554444444433332 2
Q ss_pred HhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 608 ILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (899)
Q Consensus 608 ~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk 687 (899)
+||+- +|-+-.-.+....+|+++|+..|.+.|+.+.....+-+..|-.-.+-..--.++++|-....|++.+-+.-+
T Consensus 385 -~~e~e--qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~ 461 (980)
T KOG0980|consen 385 -REEQE--QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSI 461 (980)
T ss_pred -HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22222 566666677788899999999999999888888888888777777776666677766666666655544444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002627 688 ALFQEELVTEKRKVVQLLQE 707 (899)
Q Consensus 688 ~~LQEEL~~eK~KLa~LeqE 707 (899)
....+++...-+.|.++.++
T Consensus 462 ~~~~~~~~~L~d~le~~~~~ 481 (980)
T KOG0980|consen 462 DDVEEENTNLNDQLEELQRA 481 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 43333333333333333333
No 16
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.6e-06 Score=89.72 Aligned_cols=57 Identities=23% Similarity=0.498 Sum_probs=48.3
Q ss_pred cccccccccccccccceEEecCCCcccChhhHHHhhhc--CCCCCCCCccccc--ceEeEEe
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQ--GMKDCPSCRSPIQ--RRIPVRY 896 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~--~~~kCPiCR~~I~--~~irVf~ 896 (899)
......|-||++..++.|+..|||+ ||..|.-+|... ....||+|+..|. .++.||.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4567889999999999999999999 999999888653 2357899998776 6888886
No 17
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.02 E-value=0.0023 Score=68.81 Aligned_cols=95 Identities=27% Similarity=0.354 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 002627 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS--WEKQKALFQEELVT 696 (899)
Q Consensus 619 e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~--~EkQk~~LQEEL~~ 696 (899)
+...+|.++..+++++|..+-.++.+...++. +...=+..++++.+|.+....++.. =++|..-|+-|+..
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~-------qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLEN-------QVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI 100 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 67778888888888888888877755544444 3333333444444555544433322 24445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 697 EKRKVVQLLQELDQAKALQEQLEA 720 (899)
Q Consensus 697 eK~KLa~LeqELeqak~~~kqlE~ 720 (899)
.++++..++.++.++...++.++.
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444433
No 18
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.98 E-value=0.0046 Score=77.02 Aligned_cols=189 Identities=13% Similarity=0.152 Sum_probs=96.6
Q ss_pred CCCCCcccCcCcccccCCCCch--------hHHHHH------HhHHHHHHHHHHHHhhHHHhHHHHHHHHHhh---hcHH
Q 002627 525 CGYAGILSDDTSLEHLVPQDKR--------DEIILK------LIPRVRELHNQLHEWTEWANQKVMQAARRLS---KDKA 587 (899)
Q Consensus 525 ~~~~~~~~d~~~~~~~vp~D~K--------de~il~------Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~---~d~~ 587 (899)
.++++|++| ++--|.-||.= +....+ ++.++.+.=....+--|=|.+-+-|-+..|. +...
T Consensus 168 v~~f~I~ve--NP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~ 245 (1074)
T KOG0250|consen 168 VDHFNIQVE--NPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIK 245 (1074)
T ss_pred HHHhCcCCC--CcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 678999999 45588888863 333334 4566666666666777777777777776665 3444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHH--------hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------HHH
Q 002627 588 ELKTLRQEKEEVERLKKEKQILEEN--------TMKKLSEMENALCKASGQVERANSAVRRLEVENTALR-------QEM 652 (899)
Q Consensus 588 eLk~LR~EkEe~eRlkk~k~~lee~--------t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr-------~em 652 (899)
+++.++...++++-++...+.|... ..+.|.+.++.+.+....++.....+.+....++.+| ++.
T Consensus 246 e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i 325 (1074)
T KOG0250|consen 246 EEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKI 325 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4445555555555544443333322 1222444444444444444444444444444444433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 653 EAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 653 Eaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
...+-....+...|.++.+.-+.........+.+....+..|..-|.++..++++++.++...
T Consensus 326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 326 GELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333334443333333334444444555555555555555555555555554444
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.98 E-value=0.016 Score=73.42 Aligned_cols=39 Identities=23% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
+.+++..+.++..++++....+.+++.+...+..+.+..
T Consensus 310 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 348 (1164)
T TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=97.94 E-value=4e-06 Score=87.95 Aligned_cols=55 Identities=25% Similarity=0.624 Sum_probs=42.8
Q ss_pred cccccccccccccc---------cceEEecCCCcccChhhHHHhhhcC-----CCCCCCCcccccceEeE
Q 002627 839 VKRERECVMCLSEE---------MSVVFLPCAHQVVCTTCNELHEKQG-----MKDCPSCRSPIQRRIPV 894 (899)
Q Consensus 839 l~~~~~CvIC~d~~---------~~vvllPCgH~~~C~~Ca~~l~~~~-----~~kCPiCR~~I~~~irV 894 (899)
...+.+|.||++.. .--++.+|+|. ||..|+..|.... .+.||+||..+..++..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 45568899999852 22577899999 9999999998642 24599999999876644
No 21
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.92 E-value=4.3e-06 Score=66.48 Aligned_cols=40 Identities=43% Similarity=0.876 Sum_probs=34.0
Q ss_pred ccccccccc---cceEEecCCCcccChhhHHHhhhcCCCCCCCCc
Q 002627 844 ECVMCLSEE---MSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCR 885 (899)
Q Consensus 844 ~CvIC~d~~---~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR 885 (899)
.|.||++.. ..++.+||||. ||..|+..|.... ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhC-CcCCccC
Confidence 699999964 56888899999 9999999998764 6999997
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=97.90 E-value=0.029 Score=69.80 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002627 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (899)
Q Consensus 616 kL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~e 651 (899)
++.++++++.....++......+.+++.+...+..+
T Consensus 239 ~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~ 274 (880)
T PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 23
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.89 E-value=9.5e-06 Score=62.38 Aligned_cols=44 Identities=48% Similarity=1.066 Sum_probs=35.5
Q ss_pred ccccccccccc-eEEecCCCcccChhhHHHhhhcCCCCCCCCcccc
Q 002627 844 ECVMCLSEEMS-VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI 888 (899)
Q Consensus 844 ~CvIC~d~~~~-vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I 888 (899)
.|.||++.... +.+.||||. ||..|...+.......||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 49999998744 455559999 999999988775457899999864
No 24
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.85 E-value=1.1e-05 Score=59.92 Aligned_cols=39 Identities=41% Similarity=0.963 Sum_probs=34.9
Q ss_pred cccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCC
Q 002627 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSC 884 (899)
Q Consensus 845 CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiC 884 (899)
|.||++.....+++||||. ||..|...+.......||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999998876455789998
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.83 E-value=0.057 Score=64.09 Aligned_cols=60 Identities=22% Similarity=0.348 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKR--------------KVVQLLQELDQAKALQEQLEARWRQEEKA 728 (899)
Q Consensus 669 ~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~--------------KLa~LeqELeqak~~~kqlE~kwrQeqka 728 (899)
+.+.-+....++++-+.+...|.+||.+... +.+++..+|+++...++....+|.++.+.
T Consensus 288 LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~ 361 (546)
T PF07888_consen 288 LKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQA 361 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555433222 23444444454444555555555555544
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=97.82 E-value=0.018 Score=71.73 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEE 726 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeq 726 (899)
+...+++++..+++++...+.++..+..+...+...+..++....+.+
T Consensus 315 ~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~ 362 (880)
T PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555444444444444444444443333
No 27
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.80 E-value=1.6e-05 Score=63.44 Aligned_cols=39 Identities=38% Similarity=0.836 Sum_probs=31.0
Q ss_pred cccccccccceEEecCCCcccChhhHHHhhhcCCC---CCCCC
Q 002627 845 CVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMK---DCPSC 884 (899)
Q Consensus 845 CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~---kCPiC 884 (899)
|+||++-..+.|.++|||. ||..|+..+...... .||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 999999998765433 59988
No 28
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=1.4e-05 Score=91.05 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=45.4
Q ss_pred CCccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 836 TGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 836 ~~~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
+..+.....|.||++...+.+++||||. ||..|+..+... ...||.|+.++..
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 3456778899999999999999999999 999999988754 4589999998864
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.77 E-value=0.085 Score=64.82 Aligned_cols=147 Identities=23% Similarity=0.309 Sum_probs=77.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHH-HHHhHHH-------hhhh-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002627 574 KVMQAARRLSKDKAELKTLRQEKEEVERLKKE-KQILEEN-------TMKK-LSEMENALCKASGQVERANSAVRRLEVE 644 (899)
Q Consensus 574 kvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~-k~~lee~-------t~kk-L~e~E~al~kas~Q~~ra~~~vr~lE~e 644 (899)
|+|+.---|.+ +|+--|.|.+|++.-|.. |+.|.|- |..| |. |+....+..+|+.+.-.+-+||.+
T Consensus 273 kim~qqa~Lqr---el~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmA--EERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 273 KIMEQQADLQR---ELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMA--EERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665555544 344455565555444321 2222221 2211 21 344566777888888899999999
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 645 NTALRQEMEAA-----KLRAAESAASCQEVSKREKKTQMKF---QSWEKQ-KALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 645 na~lr~emEaa-----kl~a~Es~~~~~e~~ekEkk~~k~l---~~~EkQ-k~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
...||+|||-- ..+ +=...++...-.|-|..+-|| .+-||| .+++++|++.-+.++..+.+..+.+.+.+
T Consensus 348 lEILKaEmeekG~~~~~~s-s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~ 426 (1243)
T KOG0971|consen 348 LEILKAEMEEKGSDGQAAS-SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSREL 426 (1243)
T ss_pred HHHHHHHHHhcCCCCcccc-hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999731 011 011122222223333332222 233444 55666666666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 002627 716 EQLEARWRQEE 726 (899)
Q Consensus 716 kqlE~kwrQeq 726 (899)
+++|..+-..+
T Consensus 427 d~aEs~iadlk 437 (1243)
T KOG0971|consen 427 DQAESTIADLK 437 (1243)
T ss_pred HHHHHHHHHHH
Confidence 66665444333
No 30
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.76 E-value=9.3e-06 Score=90.49 Aligned_cols=55 Identities=29% Similarity=0.660 Sum_probs=47.1
Q ss_pred cccccccccccccceEEecCCCcccChhhHHHhhhcC-CCCCCCCcccccceEeEEe
Q 002627 841 RERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQG-MKDCPSCRSPIQRRIPVRY 896 (899)
Q Consensus 841 ~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~-~~kCPiCR~~I~~~irVf~ 896 (899)
....|.||-++.+++-+-||||+ +|..|...|.... ..+||+||..|.+.-+|.+
T Consensus 368 TFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred hHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 34679999999999999999999 9999999887443 5799999999998766643
No 31
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.75 E-value=1.7e-05 Score=61.87 Aligned_cols=39 Identities=36% Similarity=0.887 Sum_probs=34.8
Q ss_pred cccccccccceE-EecCCCcccChhhHHHhhh-cCCCCCCCC
Q 002627 845 CVMCLSEEMSVV-FLPCAHQVVCTTCNELHEK-QGMKDCPSC 884 (899)
Q Consensus 845 CvIC~d~~~~vv-llPCgH~~~C~~Ca~~l~~-~~~~kCPiC 884 (899)
|.||++...+.+ +++|||. ||..|...+.. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999988888 9999999 99999999887 556789998
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=97.74 E-value=0.073 Score=66.45 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=15.6
Q ss_pred HHHHHHhHHHHHHHHHHHHhhH
Q 002627 548 EIILKLIPRVRELHNQLHEWTE 569 (899)
Q Consensus 548 e~il~Lv~r~~el~~~~~~~~d 569 (899)
+.+-++..++.+|+.++.+|+.
T Consensus 475 ~~~~~~~~~~~~le~~l~~~~~ 496 (880)
T PRK02224 475 ERVEELEAELEDLEEEVEEVEE 496 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666678888888887775
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=1.6e-05 Score=91.56 Aligned_cols=55 Identities=29% Similarity=0.534 Sum_probs=47.2
Q ss_pred ccccccccccccceEEecCCCcccChhhHHHhhhcC----CCCCCCCcccccc--eEeEEec
Q 002627 842 ERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQG----MKDCPSCRSPIQR--RIPVRYA 897 (899)
Q Consensus 842 ~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~----~~kCPiCR~~I~~--~irVf~a 897 (899)
...|+||+..+...+.+.|||. ||..|.-.++..+ ...||+||..|.- +..|++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 6789999999999999999999 9999998876543 4689999999986 7777763
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.71 E-value=0.017 Score=61.89 Aligned_cols=111 Identities=24% Similarity=0.275 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELV 695 (899)
Q Consensus 616 kL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~ 695 (899)
||..+|.+|..+....+.++..+-..++....+..+.+.+.-.+...+..|.++-+.-+.....+.++|-.-.+..+...
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~ 172 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERED 172 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 696 TEKRKVVQLLQELDQAKALQEQLEARWRQEE 726 (899)
Q Consensus 696 ~eK~KLa~LeqELeqak~~~kqlE~kwrQeq 726 (899)
....+|..|.+.|.++..+.+..+.+....+
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333333333
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.68 E-value=0.032 Score=64.49 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emE 653 (899)
+.+.+.+|..+..+++..+..+..++.+....+.++.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.66 E-value=0.039 Score=73.34 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=32.7
Q ss_pred ccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHh----H---HHHHHHHHhhhcHHHHHHHHHhHHHHHHHHH
Q 002627 539 HLVPQDKRDEIILKLIPRVRELHNQLHEWTEWAN----Q---KVMQAARRLSKDKAELKTLRQEKEEVERLKK 604 (899)
Q Consensus 539 ~~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~----q---kvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk 604 (899)
.+..++.++.-| .+|++-..--..|+.|.=|-= + +|..-.-.+.+--.++..|+.+.++.+-.++
T Consensus 791 ~~~kr~~~~~ai-~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ 862 (1930)
T KOG0161|consen 791 EFKKRLQQLDAI-KVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRK 862 (1930)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555555444 455555555588888876631 1 1222223344444555555555444444333
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.65 E-value=0.062 Score=71.60 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARW 722 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kw 722 (899)
++.+..++.++..|+++|+.++...+.++++..++...++.+..+.
T Consensus 1096 ~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1096 QKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555665555555555555555444444444333
No 38
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.64 E-value=3.4e-05 Score=61.66 Aligned_cols=41 Identities=24% Similarity=0.677 Sum_probs=34.0
Q ss_pred ccccccccc---cceEEecCCCcccChhhHHHhhhcCCCCCCCCcc
Q 002627 844 ECVMCLSEE---MSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRS 886 (899)
Q Consensus 844 ~CvIC~d~~---~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~ 886 (899)
.|.||+... ...++++|||. ||..|+..+. .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhc-CCCCCCcCCCC
Confidence 488999865 56888999999 9999999886 33579999985
No 39
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.60 E-value=5e-05 Score=63.95 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCccccc
Q 002627 843 RECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889 (899)
Q Consensus 843 ~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~ 889 (899)
..|.||.+-..+.|+.||||. ||..|+..+... ...||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 469999999999999999999 999999998875 568999999985
No 40
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.073 Score=64.76 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhhhh
Q 002627 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNLMR 767 (899)
Q Consensus 688 ~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~qr 767 (899)
.+|++++.........+.+++....+.++.......+..+..+.+..+++.-....++++..- ...+.++..
T Consensus 527 ~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~--------~e~~~ele~ 598 (698)
T KOG0978|consen 527 GKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQY--------AELELELEI 598 (698)
T ss_pred HHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 333333333333334444444444444444444444444444444444444444444443322 233444556
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 002627 768 YKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 768 ~k~dikrLEqElsrLr~k~ 786 (899)
+.+..+|++.|+.+|+.+.
T Consensus 599 ~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 599 EKFKRKRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677889999999998766
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3e-05 Score=84.32 Aligned_cols=51 Identities=33% Similarity=0.714 Sum_probs=44.9
Q ss_pred cccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceE
Q 002627 841 RERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRI 892 (899)
Q Consensus 841 ~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~i 892 (899)
...+|.||+......+.++|+|. ||+.|+.......+.+|++||.+|.+.|
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcch
Confidence 34679999999888899999999 9999999877777888999999998755
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.51 E-value=0.14 Score=54.90 Aligned_cols=178 Identities=20% Similarity=0.288 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhHHH---hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 599 VERLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK 675 (899)
Q Consensus 599 ~eRlkk~k~~lee~---t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk 675 (899)
+.-|...-+.||+. +-.||.+....|..+....|-+....+.||......-..++...-+..+....+.++-.+-..
T Consensus 38 ~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E 117 (237)
T PF00261_consen 38 VASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEE 117 (237)
T ss_dssp HHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556654 333466666666666666666666666666655554444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002627 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKED 755 (899)
Q Consensus 676 ~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~kee 755 (899)
...++...|..+....+-+.....++..|+.+|..+...++.++..-.+..+..+..-.++......+..++...
T Consensus 118 ~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra----- 192 (237)
T PF00261_consen 118 VERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA----- 192 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 455666667777777777777777777777777777777777666555554444444333333322333222211
Q ss_pred HHhhHHHHhhhhhHHHHHHHHHHHHHHhh
Q 002627 756 MIKSKAETNLMRYKDDIHRLEKEISQLRL 784 (899)
Q Consensus 756 alr~K~E~E~qr~k~dikrLEqElsrLr~ 784 (899)
-.+|....++...|.+|+.+|..++.
T Consensus 193 ---e~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 193 ---EFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223334444455555555554443
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.51 E-value=0.41 Score=57.18 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kql 718 (899)
..+-.|++.+++.|.+-+.+..-|.++|..+....+..
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt 323 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRT 323 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666654444333
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.48 E-value=0.0049 Score=75.29 Aligned_cols=89 Identities=16% Similarity=0.312 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVE-------NTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~e-------na~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQE 692 (899)
||..|+++.++|..+....++|... ...+|.|+.+.+..-.+-+..+.++...-++....++.+||+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr------ 496 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR------ 496 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4555555555555554444444433 344455555555555555555555544444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002627 693 ELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 693 EL~~eK~KLa~LeqELeqak~~~ 715 (899)
|.+|+++...++++|.+.+.+.
T Consensus 497 -L~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 497 -LAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444333
No 45
>PRK03918 chromosome segregation protein; Provisional
Probab=97.48 E-value=0.27 Score=61.41 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=13.5
Q ss_pred CchhHHHHHHhHHHHHHHHHHHH
Q 002627 544 DKRDEIILKLIPRVRELHNQLHE 566 (899)
Q Consensus 544 D~Kde~il~Lv~r~~el~~~~~~ 566 (899)
+.+.+++-++-.++.+|++++..
T Consensus 448 ~~~~el~~~~~~ei~~l~~~~~~ 470 (880)
T PRK03918 448 EHRKELLEEYTAELKRIEKELKE 470 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665666666666655543
No 46
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.24 Score=64.21 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=46.3
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHH---HHHHhHHH--------hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002627 582 LSKDKAELKTLRQEKEEVERLKK---EKQILEEN--------TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (899)
Q Consensus 582 l~~d~~eLk~LR~EkEe~eRlkk---~k~~lee~--------t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~ 650 (899)
+..=...|+.|+.+++.++|.++ ++..++.. .++++.+.++++..+..+++.....+...+.+...++.
T Consensus 195 ~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 274 (1163)
T COG1196 195 LEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556777777777776654 44444433 34445566666666666666666666666666666665
Q ss_pred HHHHHHHHHHHHH
Q 002627 651 EMEAAKLRAAESA 663 (899)
Q Consensus 651 emEaakl~a~Es~ 663 (899)
+++..+....+.+
T Consensus 275 ~~~e~~~~~~~~~ 287 (1163)
T COG1196 275 ELEELREELEELQ 287 (1163)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
No 47
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.27 Score=63.82 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHHHHHHHh
Q 002627 548 EIILKLIPRVRELHNQLHEW 567 (899)
Q Consensus 548 e~il~Lv~r~~el~~~~~~~ 567 (899)
++. .|..++.+++.++..-
T Consensus 668 ~l~-~l~~~l~~~~~~~~~~ 686 (1163)
T COG1196 668 ELK-ELEEELAELEAQLEKL 686 (1163)
T ss_pred HHH-HHHHHHHHHHHHHHHH
Confidence 555 7778888887766543
No 48
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=5.1e-05 Score=81.41 Aligned_cols=49 Identities=29% Similarity=0.703 Sum_probs=41.8
Q ss_pred ccccccccccccccceEEecCCCcccChhhHHH-hhhcCCCCCCCCccccc
Q 002627 840 KRERECVMCLSEEMSVVFLPCAHQVVCTTCNEL-HEKQGMKDCPSCRSPIQ 889 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~-l~~~~~~kCPiCR~~I~ 889 (899)
.....|+||++.+-+.+..||||+ ||..|.-. |.......||.||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 346789999999999999999999 99999988 65555567999998764
No 49
>PRK11637 AmiB activator; Provisional
Probab=97.40 E-value=0.19 Score=58.21 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
++..|..+..+++..+..+.+++.+++.++++.+..
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 50
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.00012 Score=80.90 Aligned_cols=48 Identities=27% Similarity=0.802 Sum_probs=36.8
Q ss_pred cccccccccc---ccce--EEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 842 ERECVMCLSE---EMSV--VFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 842 ~~~CvIC~d~---~~~v--vllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
...|++|.+. ..++ .+-+|||. ||..|+..+...+...||.|+.++..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 3579999993 2332 22289999 99999999876666789999998864
No 51
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.35 E-value=8.5e-05 Score=80.36 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=44.3
Q ss_pred CccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCccccc
Q 002627 837 GGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889 (899)
Q Consensus 837 ~~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~ 889 (899)
..+.....|-||.+..+..++.||||. ||.-|+..+.. ....||.||.++.
T Consensus 20 ~~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~-~qp~CP~Cr~~~~ 70 (391)
T COG5432 20 KGLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLG-TQPFCPVCREDPC 70 (391)
T ss_pred hcchhHHHhhhhhheeecceecccccc-hhHHHHHHHhc-CCCCCccccccHH
Confidence 456677889999999999999999999 99999998765 3579999998765
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.30 E-value=0.53 Score=61.37 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002627 694 LVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 694 L~~eK~KLa~LeqELeqak~~~ 715 (899)
|...+.++..+.+++..++...
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 5555555555555555544433
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.3 Score=61.93 Aligned_cols=171 Identities=18% Similarity=0.251 Sum_probs=86.8
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH-HHHH
Q 002627 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEV----------SKREKKTQ-MKFQ 681 (899)
Q Consensus 613 t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~----------~ekEkk~~-k~l~ 681 (899)
..+++.++|.+=-+...++.+..+-+-+||.+....+.+...+.-.-+.....+++. .+++++.+ +.+.
T Consensus 389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~ 468 (1293)
T KOG0996|consen 389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILD 468 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666555555444433333333332 22222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 002627 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKA 761 (899)
Q Consensus 682 ~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~ 761 (899)
++.++-.-+.+++.....++..+..++.+++...+-.+.+..-..+..+..+..++..+..+.+..+...++-..+. ..
T Consensus 469 ~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~-~~ 547 (1293)
T KOG0996|consen 469 SLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELD-DL 547 (1293)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 22233333444455555555555566666666666666666666666666666666666665555444433322221 22
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhh
Q 002627 762 ETNLMRYKDDIHRLEKEISQLRL 784 (899)
Q Consensus 762 E~E~qr~k~dikrLEqElsrLr~ 784 (899)
+.++..++.++...++++.+++.
T Consensus 548 k~~l~~~k~e~~~~~k~l~~~~~ 570 (1293)
T KOG0996|consen 548 KEELPSLKQELKEKEKELPKLRK 570 (1293)
T ss_pred HHhhhhHHHHHHHHHHhHHHHHH
Confidence 23334444445555555544444
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.28 E-value=0.23 Score=62.55 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (899)
Q Consensus 616 kL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ek 672 (899)
-|.+-+.|..+|..-+..|+..++-.+.-.+.++.+|+++..-+.-...++.++-.+
T Consensus 1571 aL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~ 1627 (1758)
T KOG0994|consen 1571 ALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETR 1627 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888889999999999999999999999999999998887766665555554443
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.24 E-value=0.5 Score=55.91 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002627 680 FQSWEKQKALFQEELVTEKRKVV 702 (899)
Q Consensus 680 l~~~EkQk~~LQEEL~~eK~KLa 702 (899)
+...+.++..++.+++....++.
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555444444444
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.21 E-value=0.38 Score=60.74 Aligned_cols=119 Identities=20% Similarity=0.233 Sum_probs=66.1
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 612 NTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (899)
Q Consensus 612 ~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQ 691 (899)
..+.+|++.|..+..+..+++..+..+..+-......|.++..++-.--+...++++..+.-... +||+..++
T Consensus 313 ~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l-------~k~I~~~~ 385 (1074)
T KOG0250|consen 313 EARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL-------EKQIADLE 385 (1074)
T ss_pred HHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 35667888888888888877777776666666666666666666666666655555555444444 44444444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 692 EEL-VTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQAS 737 (899)
Q Consensus 692 EEL-~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE 737 (899)
++. .....++.+++..+.+++++.+.++....+.....++....+.
T Consensus 386 ~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 386 KQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 4444444444444444444444444433333333333333333
No 57
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.20 E-value=9.7e-05 Score=81.34 Aligned_cols=51 Identities=20% Similarity=0.518 Sum_probs=43.6
Q ss_pred ccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 838 GVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
.++....|-||++-....+++||+|. ||.-|+..+.. ....||.|+.++..
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~-~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLS-YKPQCPTCCVTVTE 69 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhc-cCCCCCceecccch
Confidence 34556779999999999999999999 99999998765 35799999998863
No 58
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00013 Score=75.31 Aligned_cols=47 Identities=34% Similarity=0.763 Sum_probs=40.4
Q ss_pred ccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcc
Q 002627 838 GVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRS 886 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~ 886 (899)
...+...|.||++.....+++||||. ||..|+..+.. ..-.||.||.
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhcCccccccch-HhHHHHHHhcC-CCcCCcccCC
Confidence 34567889999999888899999999 99999998765 4469999993
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.43 Score=58.22 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=52.6
Q ss_pred hhhHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 002627 614 MKKLSEMENAL-CKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT-------QMKFQSWEK 685 (899)
Q Consensus 614 ~kkL~e~E~al-~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~-------~k~l~~~Ek 685 (899)
+-|-.|+|.+- .....|..|-.-.+..+-..+..+..|.++.+-...+-.-.++.+-=+-.+. .+.+..+-.
T Consensus 407 kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~is 486 (1118)
T KOG1029|consen 407 KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMIS 486 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHH
Confidence 34445555442 2344566666666666666666666666666544444333333221111111 122223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 686 QKALFQEELVTEKRKVVQLLQELDQAKALQEQLEA 720 (899)
Q Consensus 686 Qk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~ 720 (899)
++..||.+|.+.+.++.++-.|.+.+..++++...
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 45555666666666666666555555555555443
No 60
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00025 Score=77.32 Aligned_cols=48 Identities=29% Similarity=0.659 Sum_probs=39.4
Q ss_pred cccccccccccc---cceEEecCCCcccChhhHHHhhhcCCCCCCCCccccc
Q 002627 841 RERECVMCLSEE---MSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889 (899)
Q Consensus 841 ~~~~CvIC~d~~---~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~ 889 (899)
...+|+|||+.. -.++.+||.|. |-..|.+.|...-..+||+||.+|.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 347899999964 23778899999 9999999997644569999999874
No 61
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.15 E-value=0.49 Score=60.30 Aligned_cols=115 Identities=23% Similarity=0.264 Sum_probs=54.9
Q ss_pred HHHhHHHhhhhHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 002627 606 KQILEENTMKKLSEMENA---LCKASGQVERANSAVRRLEVENTALRQEMEAAKL---RAAESAASCQEVSKREKKTQMK 679 (899)
Q Consensus 606 k~~lee~t~kkL~e~E~a---l~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl---~a~Es~~~~~e~~ekEkk~~k~ 679 (899)
++-|+...+..-.+||++ ..++...+++.++.-+.|+..+...++|.+-++. ...+.-..++...+.-+....+
T Consensus 510 ~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~ 589 (1317)
T KOG0612|consen 510 KRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDK 589 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHH
Confidence 333344444443334433 3344444667777777777777777776663322 2333333444433322222223
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 680 FQSW-------EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEA 720 (899)
Q Consensus 680 l~~~-------EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~ 720 (899)
+..+ .++...++.+++.+++....+.....+++..+..++.
T Consensus 590 l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~ 637 (1317)
T KOG0612|consen 590 LSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEE 637 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333 3333344444555555555555555555555544443
No 62
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.14 E-value=0.00019 Score=57.75 Aligned_cols=36 Identities=31% Similarity=0.776 Sum_probs=21.4
Q ss_pred cccccccccc----eEEecCCCcccChhhHHHhhhcC---CCCCC
Q 002627 845 CVMCLSEEMS----VVFLPCAHQVVCTTCNELHEKQG---MKDCP 882 (899)
Q Consensus 845 CvIC~d~~~~----vvllPCgH~~~C~~Ca~~l~~~~---~~kCP 882 (899)
|+||++ ..+ .+++||||. ||..|...+...+ .-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcCCCCeeeCc
Confidence 899999 666 788899999 9999999987743 23676
No 63
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=97.11 E-value=0.22 Score=56.65 Aligned_cols=214 Identities=19% Similarity=0.242 Sum_probs=112.7
Q ss_pred HHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhc--HHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHH----HHHH
Q 002627 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKD--KAELKTLRQEKEEVERLKKEKQILEENTMKKLSEME----NALC 625 (899)
Q Consensus 552 ~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d--~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E----~al~ 625 (899)
-|-++|++|+.||..|..=- +..|.+-|--.| ..-+.++..- ....-+.+|+.--|++.++. +.|.
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~--e~~q~~~~s~~d~~~~~~~~~qat------CERgfAaMEetHQkkiEdLQRqHqRELe 366 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQG--EAPQSALRSQEDGHIPPGYISQAT------CERGFAAMEETHQKKIEDLQRQHQRELE 366 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCchhhHhhhhhccCCccHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999997643 555544333222 1222222221 22256777777777776654 4555
Q ss_pred HhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002627 626 KASGQVERAN-----SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT-QMKFQSWEKQKALFQEELVTEKR 699 (899)
Q Consensus 626 kas~Q~~ra~-----~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~-~k~l~~~EkQk~~LQEEL~~eK~ 699 (899)
|+..+.|+-- +++-.+|.-.-+-|.||+.. |+...| +..-.+--++. +..+++..+++.+|-++-..-=-
T Consensus 367 kLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRE-LeKsqS---vnsdveaLRrQyleelqsvqRELeVLSEQYSQKCL 442 (593)
T KOG4807|consen 367 KLREEKDRLLAEETAATISAIEAMKNAHREEMERE-LEKSQS---VNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCL 442 (593)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhhc---cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555532 23444444444555555543 222222 22222222333 45666666666666666443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hHHHHHhhHHHH
Q 002627 700 KVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAK----------------SKEDMIKSKAET 763 (899)
Q Consensus 700 KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k----------------~keealr~K~E~ 763 (899)
++.-|-+.++.-++++.+.+..-++.-.-..|+.-++.. ++.++..... =+++.+.+-.|.
T Consensus 443 EnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa---EItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEs 519 (593)
T KOG4807|consen 443 ENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA---EITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKES 519 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH---HHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHH
Confidence 444455555544444444443333333333333333322 3344433322 166777777888
Q ss_pred hhhhhHHHHHHHHHHHH
Q 002627 764 NLMRYKDDIHRLEKEIS 780 (899)
Q Consensus 764 E~qr~k~dikrLEqEls 780 (899)
+.|.++.+|.-|..|+.
T Consensus 520 EiQYLKqEissLkDELQ 536 (593)
T KOG4807|consen 520 EIQYLKQEISSLKDELQ 536 (593)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888878777777775
No 64
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.09 E-value=0.67 Score=52.91 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~ 650 (899)
+.+.-..+-||...+.+....++.|..+...+-+
T Consensus 125 ~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~ 158 (499)
T COG4372 125 LAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566666666666666666665554443
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.08 E-value=0.9 Score=52.77 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 712 KALQEQLEARWRQEEKAKEELVMQASSIRKEREQIE 747 (899)
Q Consensus 712 k~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE 747 (899)
+....+++..+...++..+++.+.....+.++.+++
T Consensus 209 kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 209 KKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444444555555555555555555544444
No 66
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.06 E-value=1.5 Score=54.58 Aligned_cols=132 Identities=24% Similarity=0.353 Sum_probs=71.2
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHH---HHhHHHHHHHHHHHHHhHHHhhhh
Q 002627 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTL---RQEKEEVERLKKEKQILEENTMKK 616 (899)
Q Consensus 540 ~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~L---R~EkEe~eRlkk~k~~lee~t~kk 616 (899)
-+|--.|.|+- |-.||+||...|+-- -.|=..|++-|+.| |=+.|+.+.+|. .-|-+
T Consensus 218 ~l~saskte~e--Lr~QvrdLtEkLetl-----------R~kR~EDk~Kl~ElekmkiqleqlqEfkS-------kim~q 277 (1243)
T KOG0971|consen 218 PLPSASKTEEE--LRAQVRDLTEKLETL-----------RLKRAEDKAKLKELEKMKIQLEQLQEFKS-------KIMEQ 277 (1243)
T ss_pred CCCccccchHH--HHHHHHHHHHHHHHH-----------HhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 34445666665 667777777544321 11222444433333 223333332221 13445
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL---RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl---~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEE 693 (899)
..++++.|..+..+...|...--+...+.+.+..-||-+-| .|.|++.+++.-.+ ....|+..+|-.+..|..|
T Consensus 278 qa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve---~lkEr~deletdlEILKaE 354 (1243)
T KOG0971|consen 278 QADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE---ALKERVDELETDLEILKAE 354 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 67888888888888877777777777777666665555533 45566555543222 2233455555555555555
Q ss_pred H
Q 002627 694 L 694 (899)
Q Consensus 694 L 694 (899)
+
T Consensus 355 m 355 (1243)
T KOG0971|consen 355 M 355 (1243)
T ss_pred H
Confidence 3
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.05 E-value=0.52 Score=60.09 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=28.0
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhhH-----------HHhHHHHHHHHHhhhcHHHHHHHHHhHHHHH
Q 002627 545 KRDEIILKLIPRVRELHNQLHEWTE-----------WANQKVMQAARRLSKDKAELKTLRQEKEEVE 600 (899)
Q Consensus 545 ~Kde~il~Lv~r~~el~~~~~~~~d-----------WA~qkvmQaa~rl~~d~~eLk~LR~EkEe~e 600 (899)
.+++|+-.|...+..+..+..+-.+ =+++|+-+...++.+-.+.+..|++|.+.++
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777655555444444432 1223333333344444444555555555543
No 68
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.33 Score=63.76 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhHHHH
Q 002627 617 LSEMENALCKASGQVERA 634 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra 634 (899)
|.+++..|.+....++.+
T Consensus 767 le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 767 IEEQETLLGTIMPEEESA 784 (1311)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 344444444444444333
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.56 Score=59.63 Aligned_cols=134 Identities=14% Similarity=0.145 Sum_probs=74.6
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 002627 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT----QMKFQSWEKQKA 688 (899)
Q Consensus 613 t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~----~k~l~~~EkQk~ 688 (899)
++++.+|+|+++.+++.+++.-+..+-.|+.....++.+.+--+.+.......+++-.++..+. .+++.....++.
T Consensus 424 ~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 424 ARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred HHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888898888888887777777777665544444444444333333333333333222222 233333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 689 LFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQI 746 (899)
Q Consensus 689 ~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEra 746 (899)
..+.||.....+-....+.+++++..+.......++.......+...+...+.++.++
T Consensus 504 vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~ 561 (1293)
T KOG0996|consen 504 VAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEK 561 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5555555555555555556666666666666666666666666655555544444443
No 70
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.02 E-value=0.00028 Score=59.51 Aligned_cols=47 Identities=30% Similarity=0.721 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 840 KRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
.....|+.|......-+++||||+ +|..|.... +...||+|..+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred ccceeEEEccccccccccccccce-eeccccChh---hccCCCCCCCcccC
Confidence 345679999999888889999999 899998864 45789999999863
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.01 E-value=0.79 Score=60.32 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARW 722 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kw 722 (899)
..+...||.++..+.+++...+..+..+..++..+...+..++.+.
T Consensus 880 l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 880 LQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3455666666666666666666666666555555554444444433
No 72
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.93 E-value=0.86 Score=54.47 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
...+...|..+..+|+.+...+.+...+...|+..++..+..-...-..+..+.+++......+..++-++.+++.+|..
T Consensus 276 ~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 276 SSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 44555556666667777776666666666666666666666665555556666677777777777777777777777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002627 697 EKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 697 eK~KLa~LeqELeqak~~~kql 718 (899)
.+.+-.+.......+...++++
T Consensus 356 ~~~~e~~~k~~~~~l~~~Lqql 377 (522)
T PF05701_consen 356 AKAEEEKAKEAMSELPKALQQL 377 (522)
T ss_pred HHhhhcchhhhHHHHHHHHHHH
Confidence 5544443333333333333333
No 73
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.93 E-value=0.98 Score=56.71 Aligned_cols=108 Identities=29% Similarity=0.452 Sum_probs=73.9
Q ss_pred chhHHHHHHhHHHHHHHHHH----HHhhHHHhHHHHHHHHHhhhcHHHHHHHHHh------------------HHHHHHH
Q 002627 545 KRDEIILKLIPRVRELHNQL----HEWTEWANQKVMQAARRLSKDKAELKTLRQE------------------KEEVERL 602 (899)
Q Consensus 545 ~Kde~il~Lv~r~~el~~~~----~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~E------------------kEe~eRl 602 (899)
.|-|..+.|-.-+.+|+.++ |+--||-. -|+|......||..||+- |+.++.|
T Consensus 195 EK~enll~lr~eLddleae~~klrqe~~e~l~-----ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveel 269 (1195)
T KOG4643|consen 195 EKFENLLRLRNELDDLEAEISKLRQEIEEFLD-----EAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEEL 269 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHH
Confidence 34456666666666666655 23344443 356677777777777764 2334444
Q ss_pred HH-------HHHHhHHHh-------------------hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 603 KK-------EKQILEENT-------------------MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (899)
Q Consensus 603 kk-------~k~~lee~t-------------------~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaak 656 (899)
|. +|+.|||+- .++|.+|+.....-.+|.+.-......|+++++.|-..|+-.+
T Consensus 270 kedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 270 KEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 43 467777761 2347888888888888999999999999999999999998887
Q ss_pred H
Q 002627 657 L 657 (899)
Q Consensus 657 l 657 (899)
.
T Consensus 350 ~ 350 (1195)
T KOG4643|consen 350 I 350 (1195)
T ss_pred h
Confidence 7
No 74
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00049 Score=76.74 Aligned_cols=47 Identities=30% Similarity=0.774 Sum_probs=37.7
Q ss_pred cccccccccccccc-------------ceEEecCCCcccChhhHHHhhhcCCCCCCCCcccc
Q 002627 840 KRERECVMCLSEEM-------------SVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI 888 (899)
Q Consensus 840 ~~~~~CvIC~d~~~-------------~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I 888 (899)
.++..|.|||++.. ..-=+||||. +--.|...|.+ +..+||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHH-hccCCCcccCcc
Confidence 45688999999721 1245799999 89999999987 467999999984
No 75
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.86 E-value=0.00088 Score=59.21 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=40.3
Q ss_pred ccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 840 KRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
.+...|+||.+-..+.|++||||. ||..|+..+...+...||+|+.++..
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CcccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 356789999999999999999988 99999999988767899999998875
No 76
>PF13514 AAA_27: AAA domain
Probab=96.86 E-value=1 Score=58.36 Aligned_cols=172 Identities=22% Similarity=0.306 Sum_probs=103.8
Q ss_pred CcccccCCCCchhHHHHHHhHHHHHHHHHHHHhh----HHH--hHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHH
Q 002627 535 TSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWT----EWA--NQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQI 608 (899)
Q Consensus 535 ~~~~~~vp~D~Kde~il~Lv~r~~el~~~~~~~~----dWA--~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~ 608 (899)
+.-..|.|. .+.-.|-.++.++++++.++++.. +|. .+.+-++-.++..-..+++.|+.++...+|+...|..
T Consensus 138 ea~~Lfkpr-g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~ 216 (1111)
T PF13514_consen 138 EADELFKPR-GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPL 216 (1111)
T ss_pred HHHHhhCCC-CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344478888 666678889999999999988764 454 3456677778888888999999999999999887777
Q ss_pred hHHHhhhh--HH----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 609 LEENTMKK--LS----------EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT 676 (899)
Q Consensus 609 lee~t~kk--L~----------e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~ 676 (899)
+.+-...+ |. +....+..+..++..+...+..++.+.+.++.+++....... .-......+.-...
T Consensus 217 ~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~--ll~~~~~I~~L~~~ 294 (1111)
T PF13514_consen 217 LAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEE--LLAHAAEIEALEEQ 294 (1111)
T ss_pred HHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHhhHHHHHHHHHH
Confidence 66542222 22 334455555555666666666666666666665554322211 11111112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELe 709 (899)
.-.....+.++..++.++...+..+..+.++|.
T Consensus 295 ~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 295 RGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233344555555566666555555555555444
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.86 E-value=0.46 Score=62.98 Aligned_cols=119 Identities=11% Similarity=0.096 Sum_probs=56.0
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (899)
Q Consensus 613 t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQE 692 (899)
+++|+.+.++.|.++...+.+.+..+..++.....|+.+.+.++..-....... ....+-......+..++.++...++
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l-r~q~ei~~l~~~LeELee~Lee~ee 369 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL-RQQEKIERYQADLEELEERLEEQNE 369 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555565555555555555555433333211 1122222223344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 693 ELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEEL 732 (899)
Q Consensus 693 EL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~ 732 (899)
.++..+.++..++.+++++...+..+..+..+.++...++
T Consensus 370 eLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~el 409 (1486)
T PRK04863 370 VVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQ 409 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444444444333333333
No 78
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.85 E-value=1.4 Score=53.05 Aligned_cols=187 Identities=18% Similarity=0.162 Sum_probs=112.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHH-HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 002627 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQA-ARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (899)
Q Consensus 547 de~il~Lv~r~~el~~~~~~~~dWA~qkvmQa-a~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~ 625 (899)
.+-+-+|.+++-++.+++. .-|=.|+ .++|...+.+++.++.+.=+..-+-+ |.-++.+..++...+-+...
T Consensus 120 ~~e~~~lk~~lee~~~el~------~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~-e~~~~q~~~e~e~~L~~~~~ 192 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELA------DLKTQQVTVRNLKERLRKLEQLLEIFIENAANET-EEKLEQEWAEREAGLKDEEQ 192 (629)
T ss_pred hhhHHHHHHHHHHHHHHHh------hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665443 3333443 35666666777766666444222211 22235555666666666667
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002627 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLR----AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE---- 697 (899)
Q Consensus 626 kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~----a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~e---- 697 (899)
+...|+..+...|+.+...+.....+....+-. +.=....+.-+...-...+.++..+|+++..|.+++...
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 777888888888888888887777777776666 222223344455555666778888888888777775443
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 698 -----------KRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIR 740 (899)
Q Consensus 698 -----------K~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER 740 (899)
...|.+.+.+..++-..++++++...++.......+..++.+-
T Consensus 273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKEL 326 (629)
T ss_pred hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666666666666666665555555555543
No 79
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.36 Score=56.99 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=94.9
Q ss_pred HHHHhHHHhhhh------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 605 EKQILEENTMKK------LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQM 678 (899)
Q Consensus 605 ~k~~lee~t~kk------L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k 678 (899)
+-.+|+|+.-|. +.+||+.|++....|.+..+.--+++..++.++.--++...+--.--.-+.|...||...+.
T Consensus 91 EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rlls 170 (772)
T KOG0999|consen 91 EESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLS 170 (772)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667766654 89999999999999999999988998888887765555544444444445666667777766
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEE----------LVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQI 746 (899)
Q Consensus 679 ~l~~~EkQk~~LQEE----------L~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEra 746 (899)
.-..+|.+-.-||.. .+..|.++.+++++.+=++.+.+....-..-.++..+|++..+..||-++-.+
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~al 248 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNAL 248 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666665555554 44556667777777766666666665544445566666666666655554433
No 80
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=96.82 E-value=0.28 Score=59.96 Aligned_cols=158 Identities=23% Similarity=0.262 Sum_probs=85.4
Q ss_pred HHHHHHHHHhH--HHHHHHHHHHHHhHHHhhhhHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 586 KAELKTLRQEK--EEVERLKKEKQILEENTMKKLSEMENALC-------KASGQVERANSAVRRLEVENTALRQEMEAAK 656 (899)
Q Consensus 586 ~~eLk~LR~Ek--Ee~eRlkk~k~~lee~t~kkL~e~E~al~-------kas~Q~~ra~~~vr~lE~ena~lr~emEaak 656 (899)
+-|||.|=.|. =|++|| +.|+|.=+. .+.-|++-|-+ ++-|..||+.||.+.-..+
T Consensus 343 LgELkaLVaeq~DsE~qRL--------------itEvE~cislLPav~g~tniq~EIALA-~QplrsENaqLrRrLriln 407 (861)
T PF15254_consen 343 LGELKALVAEQEDSEVQRL--------------ITEVEACISLLPAVSGSTNIQVEIALA-MQPLRSENAQLRRRLRILN 407 (861)
T ss_pred HHHHHHHHhccchHHHHHH--------------HHHHHHHHHhhhhhhccccchhhhHhh-hhhhhhhhHHHHHHHHHHH
Confidence 34555555543 355666 455555443 44557777765 8999999999999888777
Q ss_pred HHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 002627 657 LRAAESAASC----------------------QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD-QAKA 713 (899)
Q Consensus 657 l~a~Es~~~~----------------------~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELe-qak~ 713 (899)
-+-.|++++- +..++.-.+.+.-++.--.++.+.-+..+.|..++..+.++.+ ++..
T Consensus 408 qqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~ 487 (861)
T PF15254_consen 408 QQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE 487 (861)
T ss_pred HHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655554322 1111222222222222222223333333344444444444433 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 002627 714 LQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIK 758 (899)
Q Consensus 714 ~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr 758 (899)
-..+++.+.-..+..+++++..++.-+..+|.+|..++--...+|
T Consensus 488 ~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlr 532 (861)
T PF15254_consen 488 NKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLR 532 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHH
Confidence 455555556666666677777777777777776665554333333
No 81
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.67 Score=57.94 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=60.9
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 585 DKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA 664 (899)
Q Consensus 585 d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~ 664 (899)
-...|..||.|||++++. +-.-+|+..-+|-.+...+.|++.-...-......+..+..+++--+-.-++-.-
T Consensus 277 le~~l~~l~~ekeq~~a~-------~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~P 349 (1200)
T KOG0964|consen 277 LENKLTNLREEKEQLKAR-------ETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEP 349 (1200)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334566788888886665 3334566666666667777666654444444444555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 665 SCQEVSKREKKTQMKFQSWEKQKA 688 (899)
Q Consensus 665 ~~~e~~ekEkk~~k~l~~~EkQk~ 688 (899)
.+..+.++|....+++..++.+..
T Consensus 350 ky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 350 KYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776543
No 82
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00046 Score=76.46 Aligned_cols=50 Identities=26% Similarity=0.688 Sum_probs=43.2
Q ss_pred ccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccce
Q 002627 840 KRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ 891 (899)
.++..|+||+-.+.++||.||+|. -|..|+.++.-. .+.|-+|.+.|...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN-~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMN-CKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhc-CCeeeEecceeeeh
Confidence 356889999999999999999999 899999987653 47899999888754
No 83
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=2.1 Score=53.98 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWR 723 (899)
Q Consensus 644 ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwr 723 (899)
+..++.++.+.++..+.++...+. +-....+.+.-+...++.++...+..+.++..+...++..+..++.++.
T Consensus 788 rlkdl~keik~~k~~~e~~~~~~e-------k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAEESSKELE-------KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555543221 1111222233344445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002627 724 QEEKAKEELVMQASSIR 740 (899)
Q Consensus 724 QeqkakeE~laqaE~ER 740 (899)
-.+....+.++++..++
T Consensus 861 ~~~~~~~~~~~el~~~k 877 (1174)
T KOG0933|consen 861 KVEKDVKKAQAELKDQK 877 (1174)
T ss_pred hHHhHHHHHHHHHHHHH
Confidence 55555555555554443
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.77 E-value=0.26 Score=59.61 Aligned_cols=170 Identities=22% Similarity=0.304 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (899)
Q Consensus 615 kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL 694 (899)
+.|.++...|..+..+++.....+..+..+...+..+.+..+....+-+ +..+-.++...-+..-|..+.+|+.-+
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le----~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE----EELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3355566666666666666666666555555555555544444333332 111222222233444566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------------
Q 002627 695 VTEKRKVVQLLQELDQAKALQEQLEARWRQEEK----AKEELVMQASSIRKEREQIEASAKSKEDM-------------- 756 (899)
Q Consensus 695 ~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqk----akeE~laqaE~ER~ErEraE~~~k~keea-------------- 756 (899)
..-..++..|.++++..+.-+..--.+++.... .....+.++...|.+.+.++...+.+++.
T Consensus 404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 777777777777666654433332222222111 11111222222233333333322222221
Q ss_pred ---------------HhhHHHHhhhhhHHHHHHHHHHHHHHhhccch
Q 002627 757 ---------------IKSKAETNLMRYKDDIHRLEKEISQLRLKTDS 788 (899)
Q Consensus 757 ---------------lr~K~E~E~qr~k~dikrLEqElsrLr~k~d~ 788 (899)
..+|...|..+...|.+.|++||..+.-+.+.
T Consensus 484 ~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 484 VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13455666666777888888888877665533
No 85
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.76 E-value=2.2 Score=53.28 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=16.5
Q ss_pred CchhHHHHHHhHHHHHHHHHHH
Q 002627 544 DKRDEIILKLIPRVRELHNQLH 565 (899)
Q Consensus 544 D~Kde~il~Lv~r~~el~~~~~ 565 (899)
|.||.-|..|-.-+++||+++.
T Consensus 234 e~Kd~ki~~lEr~l~~le~Ei~ 255 (775)
T PF10174_consen 234 EEKDTKIASLERMLRDLEDEIY 255 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888787888777764
No 86
>PRK09039 hypothetical protein; Validated
Probab=96.74 E-value=0.21 Score=56.56 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
++.+|..++..+.--++.-..++.+.+.++++.+++
T Consensus 58 L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a 93 (343)
T PRK09039 58 LNSQIAELADLLSLERQGNQDLQDSVANLRASLSAA 93 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444433
No 87
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.74 E-value=1.7 Score=53.42 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=84.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHH-HHhHHHHHHHHHHH-HHhHHHh-hhhHHHHHHHH
Q 002627 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTL-RQEKEEVERLKKEK-QILEENT-MKKLSEMENAL 624 (899)
Q Consensus 548 e~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~L-R~EkEe~eRlkk~k-~~lee~t-~kkL~e~E~al 624 (899)
|...+|---.++++..+.+|+-|-. +|+.++.+..-| |+-.|+.+-+|+-. +++-+.+ --+..++|+
T Consensus 256 E~d~~lq~sak~ieE~m~qlk~kns--------~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~en-- 325 (1265)
T KOG0976|consen 256 EQDMDLQASAKEIEEKMRQLKAKNS--------VLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLEN-- 325 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--
Confidence 4445555566778888888888853 577666554433 33344444444321 1222222 123555555
Q ss_pred HHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 625 CKASGQVERANSAVRRLEV---ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKV 701 (899)
Q Consensus 625 ~kas~Q~~ra~~~vr~lE~---ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KL 701 (899)
.+...|+........+..+ --...+.|.|-..-.+..-+++++++.+-++..+.+|.. .-+++|++|...|.++
T Consensus 326 mkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~---l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 326 MKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLE---LQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 5555555444443332222 134556677777777778888888888777776655543 4456777777777777
Q ss_pred HHHHHH
Q 002627 702 VQLLQE 707 (899)
Q Consensus 702 a~LeqE 707 (899)
.++++-
T Consensus 403 f~~e~~ 408 (1265)
T KOG0976|consen 403 FRLEQG 408 (1265)
T ss_pred hhhhhc
Confidence 766643
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.73 E-value=0.42 Score=51.81 Aligned_cols=10 Identities=30% Similarity=0.766 Sum_probs=6.5
Q ss_pred CCCCCCCCcc
Q 002627 877 GMKDCPSCRS 886 (899)
Q Consensus 877 ~~~kCPiCR~ 886 (899)
....||.|..
T Consensus 220 ~iv~CP~CgR 229 (239)
T COG1579 220 EIVFCPYCGR 229 (239)
T ss_pred CCccCCccch
Confidence 3457888864
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.72 E-value=0.35 Score=48.45 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQAS 737 (899)
Q Consensus 682 ~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE 737 (899)
.+.+-+..|+++|.....+|......|.++.....+++.+.+..+.....|-...+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 45555666666666666666666666666666666666665555555554444443
No 90
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.72 E-value=2.7 Score=52.58 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=79.7
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 002627 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENA 623 (899)
Q Consensus 544 D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~a 623 (899)
-+||.-|+.|-.++.++.++..+... ++..=+..|.....+. +.|..+- |.-|-||.+-+..
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~-----------hi~~lkesl~~ke~~~---~~Lqsdv----e~Lr~rle~k~~~ 358 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQ-----------HIEVLKESLRAKEQEA---EMLQSDV----EALRFRLEEKNSQ 358 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH-----------HHHHHHHHHHHHHHHH---HHHHHhH----HHHHHHHHHHHHH
Confidence 35777777888888888777666421 1222222222222111 1111111 1123344444444
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH---------HHHHHH
Q 002627 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAK--------------LRAAESAASCQEVSKREK---------KTQMKF 680 (899)
Q Consensus 624 l~kas~Q~~ra~~~vr~lE~ena~lr~emEaak--------------l~a~Es~~~~~e~~ekEk---------k~~k~l 680 (899)
+.|+..|+++++...-.+-.|...++..++... -.-.+......+..+|-. ..+.++
T Consensus 359 l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~l 438 (775)
T PF10174_consen 359 LEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETL 438 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 444444444444444444444444444333332 222333333333333333 334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELVTEKRKVV-QLLQELDQAKALQEQLEARWRQEEKAKEELVMQAS 737 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~~eK~KLa-~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE 737 (899)
..+..++.++++.|...+.... ....+++..+..++.+..+....+....+...+++
T Consensus 439 Eea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~ 496 (775)
T PF10174_consen 439 EEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLE 496 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 6667777777777665543332 12234444444444444444444444444443333
No 91
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.71 E-value=0.25 Score=60.79 Aligned_cols=142 Identities=21% Similarity=0.239 Sum_probs=106.4
Q ss_pred HHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 601 RLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKF 680 (899)
Q Consensus 601 Rlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l 680 (899)
-|=.+=+..|..-+-|+.++|..|+.+..+++++.+..-+|...+..++.+-+....+...=-.-+.|...||...+.-.
T Consensus 20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445566677778889999999999999999999999999999999999988888887777777888889999888888
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELV----------TEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE 742 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~----------~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E 742 (899)
..+|.+-.-||..+. ..|.+|.+++.+.+-++.+++.+..-.+-.++..+|++.-+..||-+
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReq 171 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQ 171 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777644 44555666666666666666555554444455555555555444433
No 92
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.69 E-value=0.0012 Score=58.50 Aligned_cols=40 Identities=33% Similarity=0.753 Sum_probs=31.7
Q ss_pred ccccccccc-------------cceEEecCCCcccChhhHHHhhhcCCCCCCCCc
Q 002627 844 ECVMCLSEE-------------MSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCR 885 (899)
Q Consensus 844 ~CvIC~d~~-------------~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR 885 (899)
.|.||++.. ..+++.+|||. |...|+..|.... ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTS-SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcC-CcCCCCC
Confidence 399999865 33566799999 9999999998754 5999998
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.66 E-value=2 Score=50.00 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEV 643 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ 643 (899)
|.+.+..+.+...+++..+..+-.|+.
T Consensus 82 l~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 82 LIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 94
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.62 E-value=1.1 Score=53.85 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=111.8
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHH-HHHh----HHHHHHHHHHHH---HhHH
Q 002627 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKT-LRQE----KEEVERLKKEKQ---ILEE 611 (899)
Q Consensus 540 ~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~-LR~E----kEe~eRlkk~k~---~lee 611 (899)
+--...++.-|.+|.+++++++.++.+..+= .|--.=..++.+..+-.. |-.+ .+.++.+.+--. ..=+
T Consensus 137 l~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~---~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~ 213 (629)
T KOG0963|consen 137 LADLKTQQVTVRNLKERLRKLEQLLEIFIEN---AANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIE 213 (629)
T ss_pred HhhhhhhHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999999999999888776550 011111112222111111 1111 111111111111 1112
Q ss_pred HhhhhHHHHHHH-----------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 002627 612 NTMKKLSEMENA-----------LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES-----AASCQEVSKREKK 675 (899)
Q Consensus 612 ~t~kkL~e~E~a-----------l~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es-----~~~~~e~~ekEkk 675 (899)
-|...+.+++.. |.=....+++||..|.-||+|++.+|.+..-++=...-- ...-+-+-.+++.
T Consensus 214 ~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~ 293 (629)
T KOG0963|consen 214 DTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSE 293 (629)
T ss_pred hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHH
Confidence 255556666665 344567899999999999999999999887766443322 1122222336666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQ 724 (899)
Q Consensus 676 ~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQ 724 (899)
...-....++...-++++++.++..|..+++++......+++++.+.+.
T Consensus 294 i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 294 IAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666677788888888999999999999999999888888888766543
No 95
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.61 E-value=2.2 Score=53.17 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=87.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHH---HHHHhHHH---hhh-hHHH
Q 002627 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKK---EKQILEEN---TMK-KLSE 619 (899)
Q Consensus 547 de~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk---~k~~lee~---t~k-kL~e 619 (899)
..+|..+-.|+.+||-++++-.-- .|+.|--..+|..+++.|..-|.+-|..+++-. .+++--++ .+| ++++
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~-~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~ 435 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQRE-AQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTE 435 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457777778888888777664433 344444455777777777777776666653311 11111111 111 1222
Q ss_pred HH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 ME-------NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE 692 (899)
Q Consensus 620 ~E-------~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQE 692 (899)
+. .+......|++-+...+...+++|..+....|.......+-. .|-+...+.+.+++.|+..++.
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~-------~K~e~~~~~le~l~~El~~l~~ 508 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAE-------TKTESQAKALESLRQELALLLI 508 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHH
Confidence 22 222233445555555555666666666555555554444332 2333345666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002627 693 ELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 693 EL~~eK~KLa~LeqELeqak 712 (899)
+++..+.++..+.+......
T Consensus 509 e~~~lq~~~~~~~qs~~~~~ 528 (980)
T KOG0980|consen 509 ELEELQRTLSNLAQSHNNQL 528 (980)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 77777777766666554433
No 96
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=96.55 E-value=0.048 Score=51.00 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhHHHhhhh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 598 EVERLKKEKQILEENTMKK---LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREK 674 (899)
Q Consensus 598 e~eRlkk~k~~lee~t~kk---L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEk 674 (899)
|+.++.++|.-+.+.+.++ +..||..+.++..++.+|+..|+.+|+....+..||-..+.....+...+..+.+-|+
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~ 83 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455666666666666665 7789999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q 002627 675 KTQMKFQSWEKQ 686 (899)
Q Consensus 675 k~~k~l~~~EkQ 686 (899)
....++...|+|
T Consensus 84 ~~~~~l~~~Eke 95 (96)
T PF08647_consen 84 EFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHhhcc
Confidence 888888888876
No 97
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.55 E-value=1.7 Score=51.46 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVE 644 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~e 644 (899)
++.+|.++..++..+...+..++..
T Consensus 253 ~~~~L~~l~~~~~~~~~~l~~~~~~ 277 (562)
T PHA02562 253 PSAALNKLNTAAAKIKSKIEQFQKV 277 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 98
>PTZ00121 MAEBL; Provisional
Probab=96.55 E-value=1.8 Score=56.25 Aligned_cols=9 Identities=22% Similarity=0.139 Sum_probs=4.8
Q ss_pred CCCCCcccC
Q 002627 525 CGYAGILSD 533 (899)
Q Consensus 525 ~~~~~~~~d 533 (899)
.+|..+.||
T Consensus 1074 ~s~~~~~~~ 1082 (2084)
T PTZ00121 1074 PSYKDFDFD 1082 (2084)
T ss_pred cccccccch
Confidence 444555565
No 99
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.51 E-value=0.6 Score=52.75 Aligned_cols=7 Identities=14% Similarity=0.577 Sum_probs=3.4
Q ss_pred chhHHHH
Q 002627 545 KRDEIIL 551 (899)
Q Consensus 545 ~Kde~il 551 (899)
+|++.++
T Consensus 66 ~kG~~L~ 72 (423)
T TIGR01843 66 KAGQVLV 72 (423)
T ss_pred cCCCeEE
Confidence 4455553
No 100
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.48 E-value=4.3 Score=51.65 Aligned_cols=9 Identities=22% Similarity=0.689 Sum_probs=7.0
Q ss_pred ccccccccc
Q 002627 841 RERECVMCL 849 (899)
Q Consensus 841 ~~~~CvIC~ 849 (899)
....|+||-
T Consensus 456 ~~~~CPvCg 464 (908)
T COG0419 456 AGEKCPVCG 464 (908)
T ss_pred CCCCCCCCC
Confidence 356799998
No 101
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0016 Score=73.15 Aligned_cols=47 Identities=28% Similarity=0.689 Sum_probs=38.9
Q ss_pred ccccccccccc---ceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 843 RECVMCLSEEM---SVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 843 ~~CvIC~d~~~---~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
..|.||++... .+.++||.|. |-..|++.|..+....||+|+..|..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCC
Confidence 68999999643 3667899999 88899999988765569999998764
No 102
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.45 E-value=4.9 Score=53.99 Aligned_cols=68 Identities=26% Similarity=0.288 Sum_probs=53.5
Q ss_pred HHhHHHHHHHHHHHHHhHHHhhhh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 593 RQEKEEVERLKKEKQILEENTMKK---LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAA 660 (899)
Q Consensus 593 R~EkEe~eRlkk~k~~lee~t~kk---L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~ 660 (899)
++-.+.++.+|.+...|++.+-.= +...+..+..++.++=.||.-+.+++++...+|.|.+..+..-.
T Consensus 692 e~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~ 762 (1822)
T KOG4674|consen 692 ENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEE 762 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333566777888888888654332 77888889999999999999999999999999999887665433
No 103
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.43 E-value=0.23 Score=60.42 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=46.4
Q ss_pred HHHHHHhHHH-HHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 589 LKTLRQEKEE-VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (899)
Q Consensus 589 Lk~LR~EkEe-~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaak 656 (899)
|+-|..||++ ++.||.+.+.+. .|+.+|-..+..+..+++.....|..||+..+.|+.+|....
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~q----qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQ----QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4555566655 455555555443 367788888888888999999999999999988888776433
No 104
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=3.5 Score=52.14 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=96.9
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHh--HHHHHHHHHHHHHhHHHhhh--h---------
Q 002627 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQE--KEEVERLKKEKQILEENTMK--K--------- 616 (899)
Q Consensus 550 il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~E--kEe~eRlkk~k~~lee~t~k--k--------- 616 (899)
+-.+...+.|++.|+++ ++-+..++++....|.++..+-+.=|+- +|-...++..++-+|++... +
T Consensus 743 ~~~~~e~v~e~~~~Ike-~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~ 821 (1174)
T KOG0933|consen 743 LKELLEEVEESEQQIKE-KERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQ 821 (1174)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556778888888877 5678889999999999888877766543 44455566667777766321 1
Q ss_pred --HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 --LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (899)
Q Consensus 617 --L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEE 693 (899)
..+|+.++.....|+..-...+..|+.++..+++....+.....+.++.+-+...+-+.+-..+........+...+
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Confidence 56777788888888888888888888888888887777777777776666665555555544443333333333333
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.40 E-value=0.74 Score=51.71 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~e 697 (899)
..|+.....+...++..+..+-++....+.|+.|....+-.+.|- +.-....+..+-.++..+..+|+..
T Consensus 159 ~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~----------~~~D~~eL~~lr~eL~~~~~~i~~~ 228 (325)
T PF08317_consen 159 ELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI----------ESCDQEELEALRQELAEQKEEIEAK 228 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666666677777777777766665544444331 1111233444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002627 698 KRKVVQLLQELDQAKALQEQ 717 (899)
Q Consensus 698 K~KLa~LeqELeqak~~~kq 717 (899)
|.++.+++.++++++..++.
T Consensus 229 k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 229 KKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444433
No 106
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.39 E-value=3.4 Score=49.53 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHH
Q 002627 614 MKKLSEMENALCKASGQVERANSA 637 (899)
Q Consensus 614 ~kkL~e~E~al~kas~Q~~ra~~~ 637 (899)
.+++.+|-..|..+..-++.++..
T Consensus 171 ~~kve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 171 EEKVEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 107
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.37 E-value=4.8 Score=53.83 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHhhHHH
Q 002627 550 ILKLIPRVRELHNQLHEWTEWA 571 (899)
Q Consensus 550 il~Lv~r~~el~~~~~~~~dWA 571 (899)
+-.|.+|++.|+.|.+.=.+|-
T Consensus 316 L~ELe~rL~kLEkQaEkA~kyl 337 (1486)
T PRK04863 316 LAELNEAESDLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555553
No 108
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.00052 Score=76.31 Aligned_cols=52 Identities=25% Similarity=0.594 Sum_probs=41.9
Q ss_pred cccccccccccccccceEEe-cCCCcccChhhHHHhhhcCCCCCCCCcccccce
Q 002627 839 VKRERECVMCLSEEMSVVFL-PCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~vvll-PCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ 891 (899)
+.....|.||++--..+... -|.|. ||..|++.-...+...||.||+...+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 44567899999976555444 59999 999999987777788999999887653
No 109
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.34 E-value=6.1 Score=51.90 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=44.4
Q ss_pred HHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHh
Q 002627 548 EIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKA 627 (899)
Q Consensus 548 e~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~ka 627 (899)
+.+...+.++..++++|..-.-=.+--+.++..++..-..++..+ +++.+++..++..+-+.-.++++.+...|...
T Consensus 249 ~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~ 325 (1201)
T PF12128_consen 249 DKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNEL---NEELEKLEDEIKELRDELNKELSALNADLARI 325 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566665322222222333333333223333333 33344455555555555556666666666666
Q ss_pred hhhHHHHHHHHHHHH
Q 002627 628 SGQVERANSAVRRLE 642 (899)
Q Consensus 628 s~Q~~ra~~~vr~lE 642 (899)
.++|+.+.......+
T Consensus 326 ~~~L~~i~~~~~~ye 340 (1201)
T PF12128_consen 326 KSELDEIEQQKKDYE 340 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555544
No 110
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.33 E-value=1.3 Score=51.14 Aligned_cols=110 Identities=25% Similarity=0.254 Sum_probs=65.0
Q ss_pred chhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhh--HHHHHH
Q 002627 545 KRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKK--LSEMEN 622 (899)
Q Consensus 545 ~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kk--L~e~E~ 622 (899)
.=++-+..|-.+|.||++--- -+.=-.-|.||----|-.---.|+.+|+|-| +.++-.+.||.-|-| |--+|+
T Consensus 219 di~~kv~flerkv~eledd~~-~~gd~~SrlkqEnlqLvhR~h~LEEq~reqE----lraeE~l~Ee~rrhrEil~k~eR 293 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQN-IAGDRSSRLKQENLQLVHRYHMLEEQRREQE----LRAEESLSEEERRHREILIKKER 293 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchh-ccccchhHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666654100 0001123344433334444455666666654 455666667766655 444443
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (899)
Q Consensus 623 al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es 662 (899)
-++-|++.-+..+|-|+.||.++|......|-.+.+.
T Consensus 294 ---easle~Enlqmr~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 294 ---EASLEKENLQMRDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999998777666665554
No 111
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.32 E-value=3.9 Score=49.43 Aligned_cols=181 Identities=19% Similarity=0.232 Sum_probs=89.2
Q ss_pred HHhHHHHHHHHHHHHhhHHHhH-HHHHHHHHhhhcHHHHHHHHHhHHHH---------------HHHHHHHHHhHHH---
Q 002627 552 KLIPRVRELHNQLHEWTEWANQ-KVMQAARRLSKDKAELKTLRQEKEEV---------------ERLKKEKQILEEN--- 612 (899)
Q Consensus 552 ~Lv~r~~el~~~~~~~~dWA~q-kvmQaa~rl~~d~~eLk~LR~EkEe~---------------eRlkk~k~~lee~--- 612 (899)
.|-.++.+++.++....+|... --.+|..-|.+=..++..|..-.+++ +.|+.+-+-|.++
T Consensus 169 ~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~ 248 (569)
T PRK04778 169 ELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYH 248 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence 4678899999999999999653 33333333333334444444444444 4444443333322
Q ss_pred -----hhhhHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 613 -----TMKKLSEMENALCK-----ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQS 682 (899)
Q Consensus 613 -----t~kkL~e~E~al~k-----as~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~ 682 (899)
--+++..+.++|.. ...+++.+...+..++..+..+-.-||....--.+- -+.-.+....+..
T Consensus 249 ~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~v-------ek~~~~l~~~l~~ 321 (569)
T PRK04778 249 LDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYV-------EKNSDTLPDFLEH 321 (569)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHH
Confidence 23335555555555 234455566666666655555555444433222222 2222333344444
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 683 WEKQKALFQEELVTEKRK----------VVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSI 739 (899)
Q Consensus 683 ~EkQk~~LQEEL~~eK~K----------La~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~E 739 (899)
.+.+...|..||..-+.. +..+.+++..+....+.+...+........+...+.+..
T Consensus 322 ~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel 388 (569)
T PRK04778 322 AKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI 388 (569)
T ss_pred HHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 444544555554444444 445555555555555544444443333333333333333
No 112
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.31 E-value=5.3 Score=50.85 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred hHHHHHHhH-HHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHH
Q 002627 547 DEIILKLIP-RVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLR 593 (899)
Q Consensus 547 de~il~Lv~-r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR 593 (899)
++-+.++.. ++..|+.++.. ..|+..= .+....|-+.+.++...+
T Consensus 472 ~~~~~~~~~~el~~l~~~i~~-~~~~~~l-~~e~~~l~~~l~~~~~~~ 517 (908)
T COG0419 472 EKELLELYELELEELEEELSR-EKEEAEL-REEIEELEKELRELEEEL 517 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 556666666 88888888884 6666554 666666766666666666
No 113
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.30 E-value=4.7 Score=50.10 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (899)
Q Consensus 676 ~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~ 714 (899)
+..|.+.||.|+.+|+-||..-.+.+..+++++++++..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888888877665544
No 114
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.24 E-value=1.8 Score=48.49 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (899)
Q Consensus 615 kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQ 691 (899)
+++..++..-..+..+++.-+..+.-|..+|..||..--..-..|..-+.-+. ....|+|+.+.+++..|.
T Consensus 27 ~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is------N~LlKkl~~l~keKe~L~ 97 (310)
T PF09755_consen 27 KRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS------NTLLKKLQQLKKEKETLA 97 (310)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555556666777777777654444333332221111 233567777777776664
No 115
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0017 Score=77.14 Aligned_cols=48 Identities=29% Similarity=0.672 Sum_probs=40.9
Q ss_pred ccccccccccccccc-----eEEecCCCcccChhhHHHhhhcCCCCCCCCccccc
Q 002627 840 KRERECVMCLSEEMS-----VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~-----vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~ 889 (899)
.....|.||++.... ...+||+|. ||..|...|... ...||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHH-hCcCCcchhhhh
Confidence 446789999998766 788999999 999999999875 579999999443
No 116
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.19 E-value=5.1 Score=49.60 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=60.3
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHhHHHHHHHH-Hhhhc----HHHHHHHHHhHHHHHHHHHHH----HHhHHHhhh---hH
Q 002627 550 ILKLIPRVRELHNQLHEWTEWANQKVMQAAR-RLSKD----KAELKTLRQEKEEVERLKKEK----QILEENTMK---KL 617 (899)
Q Consensus 550 il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~-rl~~d----~~eLk~LR~EkEe~eRlkk~k----~~lee~t~k---kL 617 (899)
.+.+-.|+++||+.++++-- +.-.||+|+ ++..| .+||+.++.+.++.+..=.+| +..-+.-+. +|
T Consensus 101 lk~~~sQiriLQn~c~~lE~--ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~l 178 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEM--EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 34566788888888776532 223455554 44444 456777776654433222211 111111222 27
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEA---AKLRAAESAASCQEVSKREKKTQMKF 680 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEa---akl~a~Es~~~~~e~~ekEkk~~k~l 680 (899)
.+++.++.....+..+-|.... .....++.+|-+ --+...+-+..-+++.++++....++
T Consensus 179 t~~~~q~~tkl~e~~~en~~le---~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~ 241 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALE---EKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQK 241 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7777777666655555444332 222233333321 12223333344455555555544333
No 117
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.15 E-value=4.2 Score=49.79 Aligned_cols=129 Identities=19% Similarity=0.334 Sum_probs=62.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHH--------HHH-HHHHHHHHHHHHHHHHHHHH
Q 002627 587 AELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERA--------NSA-VRRLEVENTALRQEMEAAKL 657 (899)
Q Consensus 587 ~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra--------~~~-vr~lE~ena~lr~emEaakl 657 (899)
.++.+|++||+. .+.++.++|+.|.++..|+... .+. ...|..+.+.|+.|.+...-
T Consensus 36 eev~~L~eEk~~--------------~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~ 101 (617)
T PF15070_consen 36 EEVRTLKEEKEH--------------DISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEE 101 (617)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665 3555777777777777666521 112 23455555666666655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 658 RAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL----------VTEKRKVVQLLQELDQAKALQEQLEARWRQEEK 727 (899)
Q Consensus 658 ~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL----------~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqk 727 (899)
+-......-..+...-...-.+|..+|+.+..++++. ...|.-+++...+..++|..+..++...-....
T Consensus 102 qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn 181 (617)
T PF15070_consen 102 QLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN 181 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222221122234445555555555443 333444444444555555555555543333333
Q ss_pred HH
Q 002627 728 AK 729 (899)
Q Consensus 728 ak 729 (899)
.+
T Consensus 182 e~ 183 (617)
T PF15070_consen 182 EN 183 (617)
T ss_pred hh
Confidence 33
No 118
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=2.3 Score=50.59 Aligned_cols=174 Identities=20% Similarity=0.186 Sum_probs=93.1
Q ss_pred HHHHhHHH--hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 002627 605 EKQILEEN--TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA-SCQEVSKREKKTQMKFQ 681 (899)
Q Consensus 605 ~k~~lee~--t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~-~~~e~~ekEkk~~k~l~ 681 (899)
+..+|||- -.+++.|||-....+.+++|..+.++-..-..-. .......|.+. -++|-+-||.-...++.
T Consensus 38 GL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hk-------k~~~~g~e~EesLLqESaakE~~yl~kI~ 110 (772)
T KOG0999|consen 38 GLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHK-------KVARDGEEREESLLQESAAKEEYYLQKIL 110 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhccchhhHHHHHHHHHHhHHHHHHHHH
Confidence 44455543 3344777777777777777766655443332111 11111112222 23445567777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 002627 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEA---RWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIK 758 (899)
Q Consensus 682 ~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~---kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr 758 (899)
.+|.++-.+..+|..-+.+..++.+...+.+......|. +++.+-+.....-+++-.+=.++|.--...+.-. ..-
T Consensus 111 eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqV-s~L 189 (772)
T KOG0999|consen 111 ELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQV-SNL 189 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHH
Confidence 899999999999988888888888877777665555554 3333333333333333332223222111111111 112
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 002627 759 SKAETNLMRYKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 759 ~K~E~E~qr~k~dikrLEqElsrLr~k~ 786 (899)
+.--.+...++.+|+||+.+++=|+...
T Consensus 190 R~sQVEyEglkheikRleEe~elln~q~ 217 (772)
T KOG0999|consen 190 RQSQVEYEGLKHEIKRLEEETELLNSQL 217 (772)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2334455666667777777666554433
No 119
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.12 E-value=1.7 Score=45.77 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 631 VERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (899)
Q Consensus 631 ~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeq 710 (899)
+-.-.+.+..+.+++++++.|....|..--.+...+...-..+.....-+.....++..|++.|...+.+...+.+.+.+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~ 93 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD 93 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456666666666666666666666666666666666666677788888888888888888888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002627 711 AKALQEQLEARWRQEEKAK 729 (899)
Q Consensus 711 ak~~~kqlE~kwrQeqkak 729 (899)
....+.......+...+..
T Consensus 94 ~~~el~k~~~~l~~L~~L~ 112 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKKLS 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7666666666665555433
No 120
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.08 E-value=0.47 Score=57.57 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=80.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 002627 625 CKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKAL---FQEELVTEKRKV 701 (899)
Q Consensus 625 ~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~---LQEEL~~eK~KL 701 (899)
.|+.++|++-++.++-.|..|+.+-..||-+.-+-..+.+ ...+.+-|-+.+.++...-++... ..+-+......+
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~ 172 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQL 172 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4566788888889999999999998888877655555544 333444444444444444333222 222233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHh-hH--HHHhhhhhHHHHHHHHH
Q 002627 702 VQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE-REQIEASAKSKEDMIK-SK--AETNLMRYKDDIHRLEK 777 (899)
Q Consensus 702 a~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E-rEraE~~~k~keealr-~K--~E~E~qr~k~dikrLEq 777 (899)
.++..+|..+++..+.-++..+..-.-.+|++..+..|+.+ +++++.+.. +++..+ +- .+.+..++..++.+|.+
T Consensus 173 qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~-e~~s~kk~l~~~~~~k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 173 EELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQ-ELESVKKQLEEMRHDKDKLRTDIEDLRG 251 (916)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44555555555555444432222222223443333333322 222222211 111111 11 11223566777888888
Q ss_pred HHHHHhh
Q 002627 778 EISQLRL 784 (899)
Q Consensus 778 ElsrLr~ 784 (899)
++.+|+.
T Consensus 252 e~~qL~~ 258 (916)
T KOG0249|consen 252 ELDQLRR 258 (916)
T ss_pred HHHHHHH
Confidence 8888874
No 121
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.06 E-value=0.0047 Score=68.59 Aligned_cols=54 Identities=24% Similarity=0.573 Sum_probs=42.7
Q ss_pred CccccccccccccccccceEEecCCCcccChhhHHHhhh-cCCCCCCCCcccccce
Q 002627 837 GGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEK-QGMKDCPSCRSPIQRR 891 (899)
Q Consensus 837 ~~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~-~~~~kCPiCR~~I~~~ 891 (899)
+..++...|+||-....-+.++||+|. +|..|+.++.. -..+.||+||+.-..+
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceE
Confidence 344567889999999988999999999 99999987642 1246899999866544
No 122
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.05 E-value=2.8 Score=50.33 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHH
Q 002627 552 KLIPRVRELHNQ 563 (899)
Q Consensus 552 ~Lv~r~~el~~~ 563 (899)
.-|.+|+-||.|
T Consensus 53 ~YIekVR~LEaq 64 (546)
T KOG0977|consen 53 VYIEKVRFLEAQ 64 (546)
T ss_pred HHHHHHHHHHHH
Confidence 457778877743
No 123
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0029 Score=71.29 Aligned_cols=53 Identities=30% Similarity=0.672 Sum_probs=42.2
Q ss_pred ccccccccccccccceE-----E---ecCCCcccChhhHHHhhhcC------CCCCCCCcccccceEe
Q 002627 840 KRERECVMCLSEEMSVV-----F---LPCAHQVVCTTCNELHEKQG------MKDCPSCRSPIQRRIP 893 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vv-----l---lPCgH~~~C~~Ca~~l~~~~------~~kCPiCR~~I~~~ir 893 (899)
..+..|.|||+.....+ | .+|.|. ||..|+..|.... .+.||+||.+...++.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 45789999999766555 4 679999 9999999997322 3789999999886654
No 124
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.02 E-value=7.8 Score=51.59 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHH
Q 002627 558 RELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEE 598 (899)
Q Consensus 558 ~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe 598 (899)
..|+.=+..+..|+....-+.+..+-.....+..++.+.++
T Consensus 247 ~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1353)
T TIGR02680 247 RALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGR 287 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555555555555555555555555444433
No 125
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=4.9 Score=50.03 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=25.8
Q ss_pred hcHHHHHHHHHh---HHHHHHHHHHHHHhHH---HhhhhHHHHHHHHHHh
Q 002627 584 KDKAELKTLRQE---KEEVERLKKEKQILEE---NTMKKLSEMENALCKA 627 (899)
Q Consensus 584 ~d~~eLk~LR~E---kEe~eRlkk~k~~lee---~t~kkL~e~E~al~ka 627 (899)
+|+..++.|=.+ ..+++++.|+++-|++ ..+|++..+|+|++.-
T Consensus 654 ~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~E 703 (988)
T KOG2072|consen 654 KDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAKRLE 703 (988)
T ss_pred CChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455555544333 2344445555555554 4788899999887763
No 126
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.93 E-value=10 Score=50.64 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=50.1
Q ss_pred cccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhH-----
Q 002627 536 SLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILE----- 610 (899)
Q Consensus 536 ~~~~~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~le----- 610 (899)
-+..|+|+ ..+..|-.|-.-+..|+. +-.-...|......|+.+...-....+......+-+
T Consensus 209 ~l~~~l~~-l~~~~i~~l~e~~~~~~~------------~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~ 275 (1353)
T TIGR02680 209 ALTEALPP-LDDDELTDVADALEQLDE------------YRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQ 275 (1353)
T ss_pred HHHHhCCC-CCHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456776 445557777666666651 111222333334444444443333333222222111
Q ss_pred ---HHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 611 ---ENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (899)
Q Consensus 611 ---e~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaak 656 (899)
+..+.++.+.+..+..+..++++++.....++.+...++++.++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1123334555555555555555555555555555555555555544
No 127
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=95.86 E-value=0.0023 Score=55.77 Aligned_cols=46 Identities=24% Similarity=0.639 Sum_probs=25.3
Q ss_pred cccccccccccccccceE-EecCCCcccChhhHHHhhhcCCCCCCCCcccc
Q 002627 839 VKRERECVMCLSEEMSVV-FLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI 888 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~vv-llPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I 888 (899)
++....|.+|.+-.+..| +.-|.|. ||..|+..... ..||+|+.|-
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~---~~CPvC~~Pa 50 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIG---SECPVCHTPA 50 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTT---TB-SSS--B-
T ss_pred HHHhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcC---CCCCCcCChH
Confidence 345678999999887775 5789999 99999987543 4799999875
No 128
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.82 E-value=2.4 Score=50.91 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (899)
Q Consensus 613 t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaak 656 (899)
.++++.+.+..|..+.+++.-++..+..+|.++..|++|.....
T Consensus 139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 139 AREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 67778888888888888888888888888877777777665443
No 129
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=6.8 Score=47.15 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=56.1
Q ss_pred hcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 584 KDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (899)
Q Consensus 584 ~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~ 663 (899)
++.--.++||+.+...++=-.--+.-..+...+..+|+.+|.....++++-...+.+|..+|..|+...|-.++++++=.
T Consensus 256 k~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve 335 (581)
T KOG0995|consen 256 KDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVE 335 (581)
T ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444455555554333222222233344555688899999999999999999999999999999988887777766654
Q ss_pred HHHHH
Q 002627 664 ASCQE 668 (899)
Q Consensus 664 ~~~~e 668 (899)
+--+|
T Consensus 336 ~mn~E 340 (581)
T KOG0995|consen 336 RMNLE 340 (581)
T ss_pred HHHHH
Confidence 44433
No 130
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.71 E-value=1.7 Score=46.31 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA-----SCQEVSKREKKTQMKFQSWEKQKALFQ 691 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~-----~~~e~~ekEkk~~k~l~~~EkQk~~LQ 691 (899)
+.||+..|.++...|.++-+...+++++...+....+--.-.|.--.. --.+++.+-+.....+..++.|...++
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~ 112 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVE 112 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888888888888888888887776666554433333222111 123444444445666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 692 EELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEK 727 (899)
Q Consensus 692 EEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqk 727 (899)
..+...+.+|..|++.+++++.....+-.+.+..+.
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777766666655444
No 131
>PRK09039 hypothetical protein; Validated
Probab=95.70 E-value=2.2 Score=48.48 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002627 614 MKKLSEMENALCKASGQVERANSAVRRLE 642 (899)
Q Consensus 614 ~kkL~e~E~al~kas~Q~~ra~~~vr~lE 642 (899)
+.+..+++..|.....|++.+...--+|+
T Consensus 73 ~~~~~~l~~~l~~l~~~l~~a~~~r~~Le 101 (343)
T PRK09039 73 RQGNQDLQDSVANLRASLSAAEAERSRLQ 101 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666665554444333333
No 132
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.64 E-value=6.5 Score=47.59 Aligned_cols=120 Identities=17% Similarity=0.254 Sum_probs=94.7
Q ss_pred HHHHHHHHhHHH---hhhhHHHHHHHHHHhhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 601 RLKKEKQILEEN---TMKKLSEMENALCKASGQVERANSA----------VRRLEVENTALRQEMEAAKLRAAESAASCQ 667 (899)
Q Consensus 601 Rlkk~k~~lee~---t~kkL~e~E~al~kas~Q~~ra~~~----------vr~lE~ena~lr~emEaakl~a~Es~~~~~ 667 (899)
+...+++.++.+ ..+.|.+++.....+..++++-+.. ++.++.+...+..+++...-...+....+.
T Consensus 300 kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ys 379 (569)
T PRK04778 300 REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYS 379 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 333444444443 2334788888888899999998888 889999999999999988888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 668 EVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEA 720 (899)
Q Consensus 668 e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~ 720 (899)
++.++-....+++...+++...+++.|...+..-.+++..+.+++..+..+..
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888777777777777777666655543
No 133
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.58 E-value=8.4 Score=49.55 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=20.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (899)
Q Consensus 622 ~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~ 663 (899)
+-|.+.....+.|...+...-...++|..-||..|+.+..-.
T Consensus 1598 ~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns 1639 (1758)
T KOG0994|consen 1598 QLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNS 1639 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444444455566666666655443
No 134
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=95.58 E-value=2 Score=47.32 Aligned_cols=55 Identities=31% Similarity=0.335 Sum_probs=25.3
Q ss_pred cHHHHHHHHHhHHHHHHHH----HHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002627 585 DKAELKTLRQEKEEVERLK----KEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVE 644 (899)
Q Consensus 585 d~~eLk~LR~EkEe~eRlk----k~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~e 644 (899)
-..|-..||+|-||.---+ +-||.+++.++ +|.+-|. ..-||+|..-...+.++|
T Consensus 283 rqieterlrqeeeelnikk~e~~kikqe~ddkdk-~~ed~e~----kkrqlerqekqeleqmae 341 (445)
T KOG2891|consen 283 RQIETERLRQEEEELNIKKAEACKIKQEFDDKDK-HLEDAEI----KKRQLERQEKQELEQMAE 341 (445)
T ss_pred hhhhHHHHhhhHhhhhhhHHHhhchhhhcCcccc-hhhHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445556666666532222 23555665443 3444333 234566654443333333
No 135
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.52 E-value=2.8 Score=42.25 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (899)
Q Consensus 615 kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL 694 (899)
+|..++++.|+......|--...|..||++......+.+.+.+.+.-+.+-|..+. ..+..+-..+..|+.+|
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~-------~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLE-------EELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999998888888888887776643333221 12333344444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 695 VTEKRKVVQLLQELDQAKALQEQLEA 720 (899)
Q Consensus 695 ~~eK~KLa~LeqELeqak~~~kqlE~ 720 (899)
.+.+.+...|.+++++.+..+..++.
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444444443
No 136
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.49 E-value=3 Score=47.13 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 002627 772 IHRLEKEI 779 (899)
Q Consensus 772 ikrLEqEl 779 (899)
+..++..+
T Consensus 255 l~~~~~~l 262 (423)
T TIGR01843 255 LAELRERL 262 (423)
T ss_pred HHHHHHHH
Confidence 33333333
No 137
>PRK10698 phage shock protein PspA; Provisional
Probab=95.46 E-value=2.1 Score=45.86 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAA-----SCQEVSKREKKTQMKFQSWEKQKALFQ 691 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~-----~~~e~~ekEkk~~k~l~~~EkQk~~LQ 691 (899)
+.||+..|.++...+.++-+...+++++...+..+.+--.-.|.--.. =-.+++.+.+....++..++.|....+
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~ 112 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVD 112 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888887777777777777777666655544333332222211 113344444445566666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 692 EELVTEKRKVVQLLQELDQAKALQEQLEARWRQEE 726 (899)
Q Consensus 692 EEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeq 726 (899)
..+...+..+.+|+..+.+++.....+-.+.+-.+
T Consensus 113 ~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 113 ETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766666555444
No 138
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.42 E-value=13 Score=48.32 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=10.3
Q ss_pred cccccccccccccc
Q 002627 838 GVKRERECVMCLSE 851 (899)
Q Consensus 838 ~l~~~~~CvIC~d~ 851 (899)
.+.+..-|+||-..
T Consensus 499 ~L~~GePCPVCGS~ 512 (1047)
T PRK10246 499 QLQAGQPCPLCGST 512 (1047)
T ss_pred hCCCCCCcCCCCcc
Confidence 45566779999874
No 139
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=6.9 Score=50.00 Aligned_cols=149 Identities=23% Similarity=0.246 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 002627 637 AVRRLEVENTALRQEMEAAKLRAAESA--------ASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR-----KVVQ 703 (899)
Q Consensus 637 ~vr~lE~ena~lr~emEaakl~a~Es~--------~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~-----KLa~ 703 (899)
.++.+|.+..+|..+|+.+.=..=..- +.+.|... -+...+++..+++|+.+|.-+|.-++. ++.+
T Consensus 733 ~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~ 811 (1141)
T KOG0018|consen 733 KLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVER 811 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHH
Confidence 455556666666666665543332221 11112212 222346677788888888777765554 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---hhHHHHhhhhhHHHHHHHHHHHH
Q 002627 704 LLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMI---KSKAETNLMRYKDDIHRLEKEIS 780 (899)
Q Consensus 704 LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keeal---r~K~E~E~qr~k~dikrLEqEls 780 (899)
|++.++++...++.++....-..+...+. + +++. ..+.+.+.. -......++++..++.+|.+++.
T Consensus 812 ~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~-------~~e~---k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~ 880 (1141)
T KOG0018|consen 812 WERSVEDLEKEIEGLKKDEEAAEKIIAEI-E-------ELEK---KNKSKFEKKEDEINEVKKILRRLVKELTKLDKEIT 880 (1141)
T ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHhhH-H-------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444444444433333222222222222 1 1111 111111111 11223334556667777777776
Q ss_pred HHhhcc---chhHHHHHHhc
Q 002627 781 QLRLKT---DSSKIAALRRG 797 (899)
Q Consensus 781 rLr~k~---d~~RrAaL~~g 797 (899)
.+..+. +..+.++|..+
T Consensus 881 ~~es~ie~~~~er~~lL~~c 900 (1141)
T KOG0018|consen 881 SIESKIERKESERHNLLSKC 900 (1141)
T ss_pred hhhhHHHHHHHHHHHHHHHh
Confidence 665544 44666777766
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.41 E-value=5.4 Score=43.96 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 640 RLEVENTALRQEMEAA-KLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 640 ~lE~ena~lr~emEaa-kl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kql 718 (899)
.|......||++.+.. ...-.+....+....+. ..............+.+|+...+.++..+..+++.++.....+
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~---l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~L 242 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEE---LRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASL 242 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhccccccc---ccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhh
Confidence 3555566677766522 22222322222222211 1222223444455566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 002627 719 EARWRQEEKAKEE 731 (899)
Q Consensus 719 E~kwrQeqkakeE 731 (899)
+..+.+.+.....
T Consensus 243 e~~l~~le~~~~~ 255 (312)
T PF00038_consen 243 ERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 6555554444433
No 141
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.39 E-value=9.8 Score=46.72 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=10.9
Q ss_pred CCCcccChhhHHHhh
Q 002627 860 CAHQVVCTTCNELHE 874 (899)
Q Consensus 860 CgH~~~C~~Ca~~l~ 874 (899)
+.|.+++..|...|.
T Consensus 603 ~~~QvIils~d~e~~ 617 (650)
T TIGR03185 603 ASHQVLLLSTDEEVD 617 (650)
T ss_pred cCCeEEEEechHhhC
Confidence 578888888877653
No 142
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.36 E-value=5.7 Score=43.83 Aligned_cols=169 Identities=18% Similarity=0.250 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH----HHHHHHH---
Q 002627 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK------RE----KKTQMKF--- 680 (899)
Q Consensus 614 ~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~e------kE----kk~~k~l--- 680 (899)
......+|..+.++..++|.+...--.|+.+...++.|++..+....+....++.... -. -....-+
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~ei 174 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREI 174 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhH
Confidence 3446678888888899999999999999999999999999888776665544433221 00 0000011
Q ss_pred -HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 002627 681 -QSWEKQKALFQEEL-VTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIK 758 (899)
Q Consensus 681 -~~~EkQk~~LQEEL-~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr 758 (899)
..++....+..+++ ...+.++..+...........................+..+++..+.....++. .+..+.
T Consensus 175 R~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~----~l~~le 250 (312)
T PF00038_consen 175 RAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER----QLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh----hHHHHH
Confidence 11222222222221 122333333333333333333333333333333333333333333333332222 233334
Q ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 002627 759 SKAETNLMRYKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 759 ~K~E~E~qr~k~dikrLEqElsrLr~k~ 786 (899)
..-..+.+.|...|..++.++..++...
T Consensus 251 ~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 251 QRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 4455566777777888888887777655
No 143
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.35 E-value=0.0053 Score=63.85 Aligned_cols=49 Identities=22% Similarity=0.466 Sum_probs=41.0
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEe
Q 002627 843 RECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIP 893 (899)
Q Consensus 843 ~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ir 893 (899)
..|.||.......|+..|||. ||..|+..-... ..+|-+|.....+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~k-g~~C~~Cgk~t~G~f~ 245 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQK-GDECGVCGKATYGRFW 245 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhcc-CCcceecchhhcccee
Confidence 579999999999999999999 999999876543 4699999987766543
No 144
>PRK11281 hypothetical protein; Provisional
Probab=95.34 E-value=2.8 Score=54.39 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHhhhcHHHHHHHHH
Q 002627 571 ANQKVMQAARRLSKDKAELKTLRQ 594 (899)
Q Consensus 571 A~qkvmQaa~rl~~d~~eLk~LR~ 594 (899)
-++++-+|.+++..-..+|..|++
T Consensus 85 L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 85 LKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhc
Confidence 345666666666666665655554
No 145
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.27 E-value=10 Score=48.23 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 660 AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWR 723 (899)
Q Consensus 660 ~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwr 723 (899)
++-...|.+...+-+....++...+++...+..+++..|.+....+..+..++.-+.+++...+
T Consensus 293 s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 293 SQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344455555555555556666666677777777777666666666666666666665554443
No 146
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.0075 Score=69.62 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=40.6
Q ss_pred ccccccccccccc-----------------ccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 839 VKRERECVMCLSE-----------------EMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 839 l~~~~~CvIC~d~-----------------~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
.+....|+|||.. .++..+.||.|. |-..|...|+....-.||.||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4567889999973 134667899999 99999999987554589999998753
No 147
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.20 E-value=3.4 Score=43.74 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 646 TALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 646 a~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
..++.|++..|...........++...-+....-|...+.++..|+.+|..
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555566666666666666666666666544
No 148
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.0064 Score=66.62 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=41.6
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEe
Q 002627 843 RECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIP 893 (899)
Q Consensus 843 ~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ir 893 (899)
..|.||.....+.|+..|+|+ ||..|+..-.. ...+|++|.+.+.++..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~q-k~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQ-KGEKCYVCSQQTHGSFN 290 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccc-cCCcceecccccccccc
Confidence 459999999999999999999 99999987544 34699999999887654
No 149
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.16 E-value=3.6 Score=40.47 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=65.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (899)
Q Consensus 626 kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~Le 705 (899)
.+..++.++...+...+.....++.+++...-.+.+.+..+..-.-+.-.. -+++..+.+++...+.++..+.
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~-------~~~L~~lr~e~~~~~~~~~~l~ 79 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED-------IKELQQLREELQELQQEINELK 79 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555666555555555544433322333333 4455666666677777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 706 QELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 706 qELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
.+.+.++..+...+..|.+.+...+.-+..++.
T Consensus 80 ~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 80 AEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888888888888889999888777776666544
No 150
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.15 E-value=2.5 Score=46.63 Aligned_cols=124 Identities=27% Similarity=0.433 Sum_probs=82.8
Q ss_pred HHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002627 564 LHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEV 643 (899)
Q Consensus 564 ~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ 643 (899)
+.||+|=-.-||.|-+.-|...+. .|++|+.+ +|. .|.-+|-||.|....++-..+.+--|.+
T Consensus 5 ~eEWKeGL~~~aLqKIqelE~Qld---kLkKE~qQ-------rQf-------QleSlEAaLqKQKqK~e~ek~e~s~LkR 67 (307)
T PF10481_consen 5 VEEWKEGLPTRALQKIQELEQQLD---KLKKERQQ-------RQF-------QLESLEAALQKQKQKVEEEKNEYSALKR 67 (307)
T ss_pred HhHHhccCCHHHHHHHHHHHHHHH---HHHHHHHH-------HHH-------hHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 346777667777776666654333 23333332 111 2555788888877777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 644 ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 644 ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kql 718 (899)
||.-|.. .|..+-+.-.+..-.++.-|-|+.-|.-.|...|..|..+++++...+..++..
T Consensus 68 Enq~l~e--------------~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 68 ENQSLME--------------SCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhhhHHH--------------HHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766544 456666666777777888888888888888888888888888877777666433
No 151
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=95.10 E-value=1.6 Score=47.54 Aligned_cols=111 Identities=18% Similarity=0.311 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEE 693 (899)
Q Consensus 614 ~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEE 693 (899)
+.||..||....++...|.++...++.|+.+......+.+.....+.+-. .--.........-++++..|..+
T Consensus 11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eae-------e~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAE-------EEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888888888655544443333222222221 11111222222335556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 694 LVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEE 731 (899)
Q Consensus 694 L~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE 731 (899)
+.....++.++..+...-......|..++...+....+
T Consensus 84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776666666666666555555444433
No 152
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.07 E-value=6.7 Score=44.14 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK----TQMKFQSWEKQKALFQEELVTEKRKVVQL 704 (899)
Q Consensus 629 ~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk----~~k~l~~~EkQk~~LQEEL~~eK~KLa~L 704 (899)
-+++.-+-.++.||.||..||.|-...+-....-+ ++|+. +-+.+...-.|+..|+++|........+.
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~E-------ekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQ 232 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYE-------EKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQ 232 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc-------HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 34677778999999999999985544443333222 22322 34677777788889999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 705 LQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQ 745 (899)
Q Consensus 705 eqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEr 745 (899)
++++.++-.++-.++.+.++.....+++...+...+....+
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~ 273 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQ 273 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888877766654433333
No 153
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.05 E-value=12 Score=45.92 Aligned_cols=152 Identities=22% Similarity=0.268 Sum_probs=95.0
Q ss_pred HhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002627 566 EWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVEN 645 (899)
Q Consensus 566 ~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~en 645 (899)
+-|.--|.|=|| ..-|.+++.+=..|-.|+...++...+-+.-|..--.-|.-.|..+.-+..||-.+-..-+..-..+
T Consensus 395 Emtk~k~~ke~e-leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQV 473 (786)
T PF05483_consen 395 EMTKQKNNKEVE-LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQV 473 (786)
T ss_pred HHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444444444444 3334444444444444444444444444443433333455566666666666666666667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 646 TALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 646 a~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kql 718 (899)
..++.|.+..++.-.|-...|..++-.-+........+--++-++|+.|..-+.+-.++-++.+.+.....++
T Consensus 474 eeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~L 546 (786)
T PF05483_consen 474 EELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQL 546 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999888888888877665555667777777777788888877777666666655554444443
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=95.04 E-value=2.5 Score=49.04 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=38.4
Q ss_pred CCcccCcCcccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHH-HhHHHHHHHHHhhhcHHHHHHHHHhHHHHH
Q 002627 528 AGILSDDTSLEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEW-ANQKVMQAARRLSKDKAELKTLRQEKEEVE 600 (899)
Q Consensus 528 ~~~~~d~~~~~~~vp~D~Kde~il~Lv~r~~el~~~~~~~~dW-A~qkvmQaa~rl~~d~~eLk~LR~EkEe~e 600 (899)
+|-||- .-..| -||=|+.-||==..- --|--. .|+++.|--+|+.+|++.|+..-++.++++
T Consensus 203 FGpp~~--~~~n~----~KD~iLv~lili~v~-----gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQ 265 (575)
T KOG4403|consen 203 FGPPYK--TNHNW----TKDFILVVLILIGVG-----GCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQ 265 (575)
T ss_pred ecCCcC--CCcch----hhhHHHHHHHHHHhh-----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776 22245 367665544321111 112222 367888999999999999998777776654
No 155
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.03 E-value=9.9 Score=44.84 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=28.9
Q ss_pred hHHHHHhhHHHHhhhhhHHHHHHHHHHHHHHhhccch
Q 002627 752 SKEDMIKSKAETNLMRYKDDIHRLEKEISQLRLKTDS 788 (899)
Q Consensus 752 ~keealr~K~E~E~qr~k~dikrLEqElsrLr~k~d~ 788 (899)
.+.+..+...|.+....+.++.+||+|+..|++.+.+
T Consensus 515 s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~t 551 (622)
T COG5185 515 SKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKT 551 (622)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3555667777777788888999999999999887644
No 156
>PRK00106 hypothetical protein; Provisional
Probab=94.99 E-value=8.9 Score=46.32 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=5.7
Q ss_pred ccccceEEecCC
Q 002627 850 SEEMSVVFLPCA 861 (899)
Q Consensus 850 d~~~~vvllPCg 861 (899)
|....+|++.|+
T Consensus 262 ddtp~~v~lS~f 273 (535)
T PRK00106 262 DDTPEVVVLSGF 273 (535)
T ss_pred cCCCCeEEEeCC
Confidence 344445555444
No 157
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.99 E-value=3.2 Score=44.92 Aligned_cols=18 Identities=44% Similarity=0.680 Sum_probs=10.4
Q ss_pred HhhhcHHHHHHHHHhHHH
Q 002627 581 RLSKDKAELKTLRQEKEE 598 (899)
Q Consensus 581 rl~~d~~eLk~LR~EkEe 598 (899)
||..-+.+|..++.+++.
T Consensus 21 ~L~~~~~~l~~~~~~~~~ 38 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEE 38 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666666666555
No 158
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.94 E-value=1.8 Score=47.14 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es 662 (899)
|.+-+.....+-.++.++...-..|+....++..++...+.++..+
T Consensus 28 L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~ 73 (246)
T PF00769_consen 28 LEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ 73 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555555555555555555555444
No 159
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.013 Score=67.18 Aligned_cols=51 Identities=29% Similarity=0.718 Sum_probs=43.0
Q ss_pred ccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 838 GVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
.......|.||+...-..|.+||||. +|..|..+.... ...||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhcc-CCCCccccccccc
Confidence 44778899999999888888899999 999998875553 4699999998875
No 160
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.86 E-value=14 Score=45.51 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhhhh
Q 002627 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEARWR--QEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNLMR 767 (899)
Q Consensus 690 LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwr--QeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~qr 767 (899)
++-.+.+...++.-++.-++.++..+ +.+-+.+ +..+....+..+++..|..+.+.|..+.+++..+|-.++.=.++
T Consensus 542 sr~~~~~le~~~~a~qat~d~a~~Dl-qk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 542 SRALAAALEAQALAEQATNDEARSDL-QKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR 620 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444421 1222233 33334445566777777777777776666666665444433333
Q ss_pred h
Q 002627 768 Y 768 (899)
Q Consensus 768 ~ 768 (899)
|
T Consensus 621 l 621 (961)
T KOG4673|consen 621 L 621 (961)
T ss_pred H
Confidence 3
No 161
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.71 E-value=6.9 Score=50.08 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=14.1
Q ss_pred HHHhHHHHHHHHHHHHHhHHH
Q 002627 592 LRQEKEEVERLKKEKQILEEN 612 (899)
Q Consensus 592 LR~EkEe~eRlkk~k~~lee~ 612 (899)
|...-+|+||||.+-.+..|-
T Consensus 406 lKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhh
Confidence 344457888888887775443
No 162
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=18 Score=46.15 Aligned_cols=41 Identities=32% Similarity=0.377 Sum_probs=31.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 622 NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAES 662 (899)
Q Consensus 622 ~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es 662 (899)
.++.++....++-...+.+||.....++.|.|.++.+-.+-
T Consensus 258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~ 298 (1200)
T KOG0964|consen 258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKI 298 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777788889999999999999888777664443
No 163
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.65 E-value=21 Score=46.98 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhh
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLL--QELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE----REQIEASAKS 752 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~Le--qELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E----rEraE~~~k~ 752 (899)
.+...+.++..++.++...++++.... +.+.+.......++.+.++..........|.-..... +...-...+.
T Consensus 972 ~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~ 1051 (1294)
T KOG0962|consen 972 QLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEERE 1051 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777665543 3444555555566666666655555554443332211 1111111222
Q ss_pred HHHHHhhHHHHhhhhhHHHHHHHHHHHHH
Q 002627 753 KEDMIKSKAETNLMRYKDDIHRLEKEISQ 781 (899)
Q Consensus 753 keealr~K~E~E~qr~k~dikrLEqElsr 781 (899)
++....-...-+.+.|...+.+++++|.+
T Consensus 1052 ~l~se~~~~lg~~ke~e~~i~~~k~eL~~ 1080 (1294)
T KOG0962|consen 1052 KLSSEKNLLLGEMKQYESQIKKLKQELRE 1080 (1294)
T ss_pred HhhhHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333344455556677777777777653
No 164
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.64 E-value=6.3 Score=41.55 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
+-||+..|.++...+.++-+....++++...+..+.+. -......+++..+..+-+ .+-.++..+++.+..
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~-------~~~~A~~Al~~g~edLAr--~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK-------WEKQAELALAAGREDLAR--EALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHH
Confidence 44588888888888877777777777766666554443 333334444444333211 122223333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 697 EKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQA 736 (899)
Q Consensus 697 eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqa 736 (899)
.+..+..+....++++..+..++.++.+.+.....+.++.
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555555555555554444
No 165
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.63 E-value=1.8 Score=53.68 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (899)
Q Consensus 619 e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQ 686 (899)
+++..+.-+..|+++....+..++.+...|+... ..-+..+.++.++.++..+|++.+-+.
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~a-------e~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESA-------EKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666677766666666666655554332 222334566666666666665555443
No 166
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.61 E-value=2.2 Score=42.58 Aligned_cols=103 Identities=14% Similarity=0.250 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002627 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAK 751 (899)
Q Consensus 672 kEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k 751 (899)
...........++.+...+..++...+..+.++..+++++++.+..++.+.++.+............++.+..++...
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~-- 123 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ-- 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333344444555555555555555555555555555555555555555555555554444444444433333333221
Q ss_pred hHHHHHhhHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 002627 752 SKEDMIKSKAETNLMRYKDDIHRLEKEISQLRLK 785 (899)
Q Consensus 752 ~keealr~K~E~E~qr~k~dikrLEqElsrLr~k 785 (899)
...-...|..++++.+.|+.+|+..
T Consensus 124 ---------~~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 124 ---------LQQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111245667788888888887754
No 167
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.58 E-value=11 Score=43.41 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQ 724 (899)
Q Consensus 684 EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQ 724 (899)
++.....++.+..-..++++....+++.-+.+.+....+.+
T Consensus 202 ~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q 242 (499)
T COG4372 202 AQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQ 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555544444333
No 168
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.54 E-value=0.011 Score=63.20 Aligned_cols=46 Identities=28% Similarity=0.812 Sum_probs=36.2
Q ss_pred ccccccccccc---ccc--eEEec-CCCcccChhhHHHhhhcCCCCCC--CCccc
Q 002627 841 RERECVMCLSE---EMS--VVFLP-CAHQVVCTTCNELHEKQGMKDCP--SCRSP 887 (899)
Q Consensus 841 ~~~~CvIC~d~---~~~--vvllP-CgH~~~C~~Ca~~l~~~~~~kCP--iCR~~ 887 (899)
....|+||... ..+ +++-| |.|. +|..|..++...+...|| .|..-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence 34579999974 233 44447 9999 999999999988889999 78753
No 169
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.53 E-value=13 Score=43.85 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (899)
Q Consensus 637 ~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~k 716 (899)
.+.+|+.-..+|=.+.=...|+.-+-...++.+.+---..+|.|+.-.+++.-||=+++.-|..-..|+++.--.-++..
T Consensus 363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 56788888888888888889999999999999999999999999999999999999999988888888876554444444
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHhhH---HHHhhhhhHHHHHHHHH
Q 002627 717 QLEARWRQEEKAKE---ELVMQASSIRKEREQIEASAKSKEDMIKSK---AETNLMRYKDDIHRLEK 777 (899)
Q Consensus 717 qlE~kwrQeqkake---E~laqaE~ER~ErEraE~~~k~keealr~K---~E~E~qr~k~dikrLEq 777 (899)
..-..+-+..+..- +-+.++...|.+.|.+- ...++.+++. .|.++..+..+.++-++
T Consensus 443 ksvsqclEmdk~LskKeeeverLQ~lkgelEkat---~SALdlLkrEKe~~EqefLslqeEfQk~ek 506 (527)
T PF15066_consen 443 KSVSQCLEMDKTLSKKEEEVERLQQLKGELEKAT---TSALDLLKREKETREQEFLSLQEEFQKHEK 506 (527)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555443 33444444444544443 3334444333 33333344444444433
No 170
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.51 E-value=5.5 Score=49.48 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 680 l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
......|+..|+.+|...+.++.. ......+-..+|+.+.+...+.+...+.
T Consensus 361 y~vav~Ev~~Lk~ELk~Lk~k~~~-------~~~~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 361 YKVAVSEVIQLKAELKALKSKYNE-------LEERYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555444444444 3334444445566555555555555544
No 171
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.49 E-value=20 Score=45.83 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=53.2
Q ss_pred HHHHHHHHHhHHH---hhhhHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 600 ERLKKEKQILEEN---TMKKLSEMENALCKASGQVER---ANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKRE 673 (899)
Q Consensus 600 eRlkk~k~~lee~---t~kkL~e~E~al~kas~Q~~r---a~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekE 673 (899)
.+|.+.-..|||. --+.+.++|+--+++.-+.++ +...+++...++...+.+.....-.+..-.....++.-+-
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~i 490 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQI 490 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454555555554 122244444444444433333 3333444444444444443333322333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 674 KKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEA 720 (899)
Q Consensus 674 kk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~ 720 (899)
+++-+.|..--.+...++.....+++.+.....++......++.++.
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~ 537 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEE 537 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555445555555555555555555555544444444444443
No 172
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.43 E-value=5.6 Score=39.18 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~~eK~KLa~LeqELeqa 711 (899)
.+|+.|+..|+.+|...+.++..|..+..=+
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444433
No 173
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.33 E-value=0.032 Score=51.34 Aligned_cols=34 Identities=26% Similarity=0.603 Sum_probs=28.5
Q ss_pred eEEecCCCcccChhhHHHhhhc--CCCCCCCCccccc
Q 002627 855 VVFLPCAHQVVCTTCNELHEKQ--GMKDCPSCRSPIQ 889 (899)
Q Consensus 855 vvllPCgH~~~C~~Ca~~l~~~--~~~kCPiCR~~I~ 889 (899)
+|+-.|+|. |-..|+..+..+ ....||+||+++.
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 567789999 999999998864 3579999999874
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.28 E-value=12 Score=42.34 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
+..|.+....+..+++.++..+-.+....+.|+.|..-.+-...|-. .-....+...-.++..+..+|..
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~----------~~d~~eL~~lk~~l~~~~~ei~~ 222 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE----------DCDPTELDRAKEKLKKLLQEIMI 222 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------hCCHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556677777888888888888888777665444433321 11111222222344444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002627 697 EKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 697 eK~KLa~LeqELeqak~~~kql 718 (899)
.+.++.++++++++++..++..
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444433
No 175
>PF13514 AAA_27: AAA domain
Probab=94.15 E-value=26 Score=45.81 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHHhhHHHh
Q 002627 542 PQDKRDEIILKLIPRVRELHNQLHEWTEWAN 572 (899)
Q Consensus 542 p~D~Kde~il~Lv~r~~el~~~~~~~~dWA~ 572 (899)
|.+--.+.+...+..+.++...++.+.+|..
T Consensus 720 ~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ 750 (1111)
T PF13514_consen 720 PADASPEEALEALELLEELREALAEIRELRR 750 (1111)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443344444444444444444444444433
No 176
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=3.8 Score=49.48 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=33.0
Q ss_pred HHHHhHHHHHHhhCCCCChHHHHHHHHHhCCchHhHhhcc
Q 002627 209 YILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (899)
Q Consensus 209 rSL~GLVafL~~~~P~LS~~dAm~yLL~ad~dL~~A~a~~ 248 (899)
-|+.-|+-|...+.|+.=.-|-|.-|...+=||..-..+.
T Consensus 37 ~s~~rllrli~~~kpDIvAvDnvyEL~~~~~~li~il~~l 76 (652)
T COG2433 37 VSLRRLLRLIWSYKPDIVAVDNVYELGADKRDLIRILKRL 76 (652)
T ss_pred hhHHHHHHHHHhcCCCEEEeccHHHHhcChhHHHHHHHhC
Confidence 6888888999999999888888888888777887766665
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.02 E-value=2 Score=47.36 Aligned_cols=120 Identities=21% Similarity=0.335 Sum_probs=88.2
Q ss_pred cCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHH----------HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHh
Q 002627 540 LVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQA----------ARRLSKDKAELKTLRQEKEEVERLKKEKQIL 609 (899)
Q Consensus 540 ~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQa----------a~rl~~d~~eLk~LR~EkEe~eRlkk~k~~l 609 (899)
|+-.+=||=+--+-+..|+|||.||.--+-=-+||-+|. -++...++.+.-.|.+|. ++|-..-.-|
T Consensus 3 Wa~eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREn---q~l~e~c~~l 79 (307)
T PF10481_consen 3 WAVEEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKREN---QSLMESCENL 79 (307)
T ss_pred chHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hhHHHHHHHH
Confidence 666666787888889999999999998888888887763 245566666666666552 2222211221
Q ss_pred HHHhhhh----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 610 EENTMKK----LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (899)
Q Consensus 610 ee~t~kk----L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~ 663 (899)
|.+|.| |.--|..|.-..|||..+.-.+.+|+.++..++.|+|.+...+....
T Consensus 80 -ek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 80 -EKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -HHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 234555 44468888899999999999999999999999999998888777544
No 178
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.99 E-value=12 Score=41.18 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 628 SGQVERANSAVRRLEVENTALRQEMEAAK 656 (899)
Q Consensus 628 s~Q~~ra~~~vr~lE~ena~lr~emEaak 656 (899)
.+||+.+....|.|+.+|..++-|.|+-|
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777777666654
No 179
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.98 E-value=6.2 Score=49.00 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002627 615 KKLSEMENALCKASGQVERANSAVRRLEVEN 645 (899)
Q Consensus 615 kkL~e~E~al~kas~Q~~ra~~~vr~lE~en 645 (899)
.+|.+++.+|..+..+...+.+.+..++...
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888888888777776543
No 180
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.84 E-value=0.059 Score=58.61 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=39.4
Q ss_pred cccccccccccccc----cceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 839 VKRERECVMCLSEE----MSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 839 l~~~~~CvIC~d~~----~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
......|+|+.... .-++|.||||+ ||..|...+. ....||+|..+|..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k--~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK--KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc--ccccccccCCcccc
Confidence 35567899998754 55788899999 9999999884 23579999999984
No 181
>PRK12704 phosphodiesterase; Provisional
Probab=93.82 E-value=11 Score=45.39 Aligned_cols=8 Identities=25% Similarity=0.198 Sum_probs=3.1
Q ss_pred cceEEecC
Q 002627 853 MSVVFLPC 860 (899)
Q Consensus 853 ~~vvllPC 860 (899)
..+|++.|
T Consensus 250 p~~v~ls~ 257 (520)
T PRK12704 250 PEAVILSG 257 (520)
T ss_pred CCeEEEec
Confidence 33344433
No 182
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.82 E-value=0.033 Score=46.19 Aligned_cols=43 Identities=35% Similarity=0.811 Sum_probs=22.2
Q ss_pred ccccccc--ccceEEec--CCCcccChhhHHHhhhcCCCCCCCCcccc
Q 002627 845 CVMCLSE--EMSVVFLP--CAHQVVCTTCNELHEKQGMKDCPSCRSPI 888 (899)
Q Consensus 845 CvIC~d~--~~~vvllP--CgH~~~C~~Ca~~l~~~~~~kCPiCR~~I 888 (899)
|++|.+. ..+.-|.| ||+. +|..|...+.......||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 5677764 34444555 8888 999999998765567999999875
No 183
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.79 E-value=22 Score=43.64 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 615 KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (899)
Q Consensus 615 kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl 657 (899)
.=|.+-|+.|.|+.+.++.+.+.+..|..+=...|..+.....
T Consensus 387 ~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r 429 (594)
T PF05667_consen 387 ELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYR 429 (594)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3366677888888888888888888887776666665554433
No 184
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.77 E-value=21 Score=44.06 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=31.2
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhhHH-HhHHHHHHHHHhhhcHHHHHHHH
Q 002627 543 QDKRDEIILKLIPRVRELHNQLHEWTEW-ANQKVMQAARRLSKDKAELKTLR 593 (899)
Q Consensus 543 ~D~Kde~il~Lv~r~~el~~~~~~~~dW-A~qkvmQaa~rl~~d~~eLk~LR 593 (899)
.-+--|||--=++-++-|+.+++.-.+| .+||. ||...-.||..|+
T Consensus 61 lsqqaelis~qlqE~rrle~e~~~lre~sl~qkm-----rLe~qa~Ele~l~ 107 (739)
T PF07111_consen 61 LSQQAELISRQLQELRRLEEEVRALRETSLQQKM-----RLEAQAEELEALA 107 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHH
Confidence 3455688866677788889999988888 44544 4554445666664
No 185
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.73 E-value=28 Score=44.87 Aligned_cols=109 Identities=20% Similarity=0.310 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH------------
Q 002627 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK-------REKKT------------ 676 (899)
Q Consensus 616 kL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~e-------kEkk~------------ 676 (899)
+|-+.|..+.++...|.+-++.+.+++.....--.+.++-| .|.....+++++ ++.+.
T Consensus 221 qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k---~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~ 297 (1141)
T KOG0018|consen 221 ELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRK---KERGKIRRELQKVDKKISEKEEKLAERPELIKVKEN 297 (1141)
T ss_pred HHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchh
Confidence 46777777777777777777777776654333333333322 111112222222 22221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 ----QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEK 727 (899)
Q Consensus 677 ----~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqk 727 (899)
-+++...++.+.-.+......+..+.+++.++..+....+.++.++++..+
T Consensus 298 ~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 298 ASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred hccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 245666666666666667777777777777777777666666666666555
No 186
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.70 E-value=13 Score=40.81 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~ 663 (899)
.+||.+|..+..++-.+.+.+++|.+|...++...|....+-..++
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~ 93 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQE 93 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999999999999999999999999987766554443
No 187
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.56 E-value=19 Score=42.20 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhh
Q 002627 549 IILKLIPRVRELHNQLHEWTEWANQKVMQAARRLS 583 (899)
Q Consensus 549 ~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~ 583 (899)
-.+-||+|+-.||.|+++--=-|-+.+-.-++|=.
T Consensus 251 EnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhr 285 (502)
T KOG0982|consen 251 ENLQLVHRYHMLEEQRREQELRAEESLSEEERRHR 285 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 35789999999999999998888888887777643
No 188
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=93.48 E-value=6.1 Score=47.12 Aligned_cols=11 Identities=18% Similarity=-0.121 Sum_probs=5.0
Q ss_pred ccccccccccc
Q 002627 840 KRERECVMCLS 850 (899)
Q Consensus 840 ~~~~~CvIC~d 850 (899)
.....=.||..
T Consensus 389 ~~S~~~~Ir~r 399 (489)
T PF05262_consen 389 KRSPVNGIRGR 399 (489)
T ss_pred cccccceeccc
Confidence 33444455553
No 189
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.37 E-value=13 Score=39.57 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR 699 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~ 699 (899)
+-.+|.-+..-.+-.....--++..+..+...|++...+-.|....-.+.-.|-.....+|...|.++....+-.+..-.
T Consensus 30 a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es 109 (205)
T KOG1003|consen 30 ALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAES 109 (205)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333333444444445555555556666666655555554444444444444456777778888888877778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 700 KVVQLLQELDQAKALQEQLEARWRQEEKAKE 730 (899)
Q Consensus 700 KLa~LeqELeqak~~~kqlE~kwrQeqkake 730 (899)
++.+|..++..+..-++.++..-....+..+
T Consensus 110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d 140 (205)
T KOG1003|consen 110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEE 140 (205)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence 8888888877777777776655444443333
No 190
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.35 E-value=15 Score=44.09 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=5.9
Q ss_pred ccccceEEecCCC
Q 002627 850 SEEMSVVFLPCAH 862 (899)
Q Consensus 850 d~~~~vvllPCgH 862 (899)
|....+|++.|+.
T Consensus 241 ddtp~~v~ls~fd 253 (514)
T TIGR03319 241 DDTPEAVILSGFD 253 (514)
T ss_pred cCCCCeEEecCCc
Confidence 3344445555543
No 191
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.32 E-value=3.7 Score=40.29 Aligned_cols=27 Identities=41% Similarity=0.497 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 629 GQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 629 ~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
.-+++-.+.+|++|.|.+.++.+.++.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888888888887755443
No 192
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.31 E-value=9.9 Score=38.24 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=6.2
Q ss_pred HHHHHHhHHH
Q 002627 589 LKTLRQEKEE 598 (899)
Q Consensus 589 Lk~LR~EkEe 598 (899)
|.+||.|++.
T Consensus 2 m~~lk~E~d~ 11 (143)
T PF12718_consen 2 MQALKLEADN 11 (143)
T ss_pred hHHHHHhHHH
Confidence 4566666665
No 193
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.30 E-value=25 Score=42.73 Aligned_cols=193 Identities=20% Similarity=0.263 Sum_probs=91.8
Q ss_pred HHhHHHHHHHHHHHHhhHHHhH-HHHHHHHHhhhcHHHHHHHHHhHHH---------------HHHHHHHHHHhHHH---
Q 002627 552 KLIPRVRELHNQLHEWTEWANQ-KVMQAARRLSKDKAELKTLRQEKEE---------------VERLKKEKQILEEN--- 612 (899)
Q Consensus 552 ~Lv~r~~el~~~~~~~~dWA~q-kvmQaa~rl~~d~~eLk~LR~EkEe---------------~eRlkk~k~~lee~--- 612 (899)
.|-.++.+++.++.+..+|... --.+|..=|.+=..++..|....+. ++.|+.+-+-|.++
T Consensus 165 ~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~ 244 (560)
T PF06160_consen 165 ELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYY 244 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC
Confidence 4577888889888888888766 4444444444444444444444333 33444444443333
Q ss_pred -----hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 613 -----TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQK 687 (899)
Q Consensus 613 -----t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk 687 (899)
--+++.++++.+..+...|+. ..+-..+..+..|..+.+..--.-..-..+-..+.+.-......+....++-
T Consensus 245 l~~~~i~~~i~~i~~~l~~~~~~L~~--l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~ 322 (560)
T PF06160_consen 245 LEHLDIEEEIEQIEEQLEEALALLKN--LELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQN 322 (560)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 233355555555554443321 1222233333333333333333333333333444445555556666666666
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 688 ALFQEELVTEK----------RKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQI 746 (899)
Q Consensus 688 ~~LQEEL~~eK----------~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEra 746 (899)
..|..|+..-+ .....+.+++..+......+...+.+....--.+...++.....++.+
T Consensus 323 ~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~i 391 (560)
T PF06160_consen 323 KELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEI 391 (560)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 66666644322 223344445555555444444444443333333333333333333333
No 194
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.29 E-value=13 Score=39.34 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE 719 (899)
.+..++.++..+...+...+..+..++..+.+++.....+.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433333
No 195
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.24 E-value=45 Score=45.56 Aligned_cols=165 Identities=19% Similarity=0.214 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhHHHh---HHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHH
Q 002627 558 RELHNQLHEWTEWAN---QKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERA 634 (899)
Q Consensus 558 ~el~~~~~~~~dWA~---qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra 634 (899)
+.+++++-+..+--. ..-+++-..+..-+.++..||.++.+++.-|....-+.+.-..+|..++..+.....|+-.+
T Consensus 76 ~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss 155 (1822)
T KOG4674|consen 76 KLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSS 155 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333 33455666677777888889999999997777777777777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 002627 635 NSAVRRLEVENTALRQEMEAAK--LRAAESAASCQE-----VSKREKKTQMKFQSWEKQ----KALFQEELVTEKRKVVQ 703 (899)
Q Consensus 635 ~~~vr~lE~ena~lr~emEaak--l~a~Es~~~~~e-----~~ekEkk~~k~l~~~EkQ----k~~LQEEL~~eK~KLa~ 703 (899)
+..+-.++.-.+++..+--..+ +.-.+++.+..+ +.+...+--.++...+++ +..|+..|..-+..+..
T Consensus 156 ~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~ 235 (1822)
T KOG4674|consen 156 TKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAE 235 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999998877766655443322 222222222211 111122223445555555 55555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002627 704 LLQELDQAKALQEQLEARW 722 (899)
Q Consensus 704 LeqELeqak~~~kqlE~kw 722 (899)
++.....+++...++..++
T Consensus 236 ~q~~~~~l~q~~~eLs~~i 254 (1822)
T KOG4674|consen 236 LQEKNKSLKQQNEELSKKI 254 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555433
No 196
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.21 E-value=18 Score=40.87 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 002627 769 KDDIHRLEKEISQLRL 784 (899)
Q Consensus 769 k~dikrLEqElsrLr~ 784 (899)
..++.+|..++..|..
T Consensus 275 ~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 275 RSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666655543
No 197
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.17 E-value=0.022 Score=68.77 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=38.2
Q ss_pred cccccccccccccce---EEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEe
Q 002627 841 RERECVMCLSEEMSV---VFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIP 893 (899)
Q Consensus 841 ~~~~CvIC~d~~~~v---vllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ir 893 (899)
....|.+|+....+- .=.+|+|+ ||..|+..|... ..+||+||..|..++.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~-aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRC-AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhh-cccCchhhhhhheeee
Confidence 445688887654432 22589999 999999998753 4699999999987653
No 198
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=93.16 E-value=22 Score=46.52 Aligned_cols=89 Identities=18% Similarity=0.280 Sum_probs=45.5
Q ss_pred HHhhhhHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 002627 611 ENTMKKLSEMENALCKAS-GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT-QMKFQSWEKQKA 688 (899)
Q Consensus 611 e~t~kkL~e~E~al~kas-~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~-~k~l~~~EkQk~ 688 (899)
..++.+|.+.++.|.... ..-.-..+..-.|+.|.+.+..+.+..++.-. +...-+++.+..+.. .++++..|.+.+
T Consensus 147 ~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~-s~~~~~~L~~~q~dl~~~~~~~l~~~~~ 225 (1109)
T PRK10929 147 TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQL-SANNRQELARLRSELAKKRSQQLDAYLQ 225 (1109)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554411 00111122223334444444444444333332 444555666555555 567777788888
Q ss_pred HHHHHHHHHHHH
Q 002627 689 LFQEELVTEKRK 700 (899)
Q Consensus 689 ~LQEEL~~eK~K 700 (899)
.||+.|+.-+.+
T Consensus 226 ~Lq~~in~kR~~ 237 (1109)
T PRK10929 226 ALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 888887765554
No 199
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.15 E-value=0.046 Score=60.79 Aligned_cols=47 Identities=28% Similarity=0.735 Sum_probs=38.5
Q ss_pred cccccccccccccccceEEecC--CCcccChhhHHHhhhcCCCCCCCCcccccce
Q 002627 839 VKRERECVMCLSEEMSVVFLPC--AHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~vvllPC--gH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ 891 (899)
..+..+|+||.+.-.-.++ -| ||+ .|..|...+ ..+||.||.+|+.+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~----~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKV----SNKCPTCRLPIGNI 93 (299)
T ss_pred chhhccCchhhccCcccce-ecCCCcE-ehhhhhhhh----cccCCccccccccH
Confidence 4567889999998877776 56 799 999999764 36999999999854
No 200
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.15 E-value=15 Score=39.79 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~E 661 (899)
+-+|+..|.++...+.++-+..+.+|++...+..+++--.-.|..
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~ 77 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL 77 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556889999999999999999999998888888777655544443
No 201
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.12 E-value=1.9 Score=48.46 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhc
Q 002627 770 DDIHRLEKEISQLRLK 785 (899)
Q Consensus 770 ~dikrLEqElsrLr~k 785 (899)
..+..+.+++.+|+..
T Consensus 120 ~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 120 NQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3455666666666654
No 202
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.058 Score=58.86 Aligned_cols=50 Identities=22% Similarity=0.469 Sum_probs=37.4
Q ss_pred ccccccccccccccc-eEEecCCCcccChhhHHHhhhcC-CCCCCCCcccccc
Q 002627 840 KRERECVMCLSEEMS-VVFLPCAHQVVCTTCNELHEKQG-MKDCPSCRSPIQR 890 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~-vvllPCgH~~~C~~Ca~~l~~~~-~~kCPiCR~~I~~ 890 (899)
....+|++|-+.+.. .++.||||. +|+.|+..-.... .-.||.|..+...
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcc
Confidence 456789999998754 566689998 9999998643211 1289999988764
No 203
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.08 E-value=1.6 Score=56.01 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=5.8
Q ss_pred cccCCCCchhH
Q 002627 538 EHLVPQDKRDE 548 (899)
Q Consensus 538 ~~~vp~D~Kde 548 (899)
+.|-+...|++
T Consensus 424 g~~g~r~eke~ 434 (1021)
T PTZ00266 424 GHYGGRVDKDH 434 (1021)
T ss_pred CccccccchhH
Confidence 34555555544
No 204
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=92.95 E-value=21 Score=40.87 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (899)
Q Consensus 619 e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~ 658 (899)
.+|..-..+..|++=--..+++.|.+...+..+.|-.|.+
T Consensus 143 ~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~R 182 (561)
T KOG1103|consen 143 HLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKR 182 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446677777777777777776666666555554433
No 205
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.91 E-value=4.5 Score=50.40 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 671 KREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (899)
Q Consensus 671 ekEkk~~k~l~~~EkQk~~LQEEL~~eK~K 700 (899)
+-|++-.+.++.+..++..++.-|+..|.|
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 206
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.89 E-value=6 Score=49.60 Aligned_cols=101 Identities=26% Similarity=0.354 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK 698 (899)
Q Consensus 619 e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK 698 (899)
++|-.|.++..|++...+.++++|...+.++.+++.++-+....++.+.-.. .....++.+...++.|+....
T Consensus 607 ~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~-------e~~e~le~~~~~~e~E~~~l~ 679 (769)
T PF05911_consen 607 ELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMK-------ESYESLETRLKDLEAEAEELQ 679 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHHH
Confidence 4666777788888888888888888888888888877766555544333222 233445666667777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 699 RKVVQLLQELDQAKALQEQLEARWRQEE 726 (899)
Q Consensus 699 ~KLa~LeqELeqak~~~kqlE~kwrQeq 726 (899)
.|+..|+.+++.-+.....+..+.+..+
T Consensus 680 ~Ki~~Le~Ele~er~~~~e~~~kc~~Le 707 (769)
T PF05911_consen 680 SKISSLEEELEKERALSEELEAKCRELE 707 (769)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 8888888888877777766666666544
No 207
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.84 E-value=15 Score=39.77 Aligned_cols=30 Identities=10% Similarity=0.312 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 683 WEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 683 ~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
...++..++++|+..+.++..+.+.++..+
T Consensus 75 l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 208
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.033 Score=63.57 Aligned_cols=36 Identities=33% Similarity=0.739 Sum_probs=29.5
Q ss_pred cccccccccccccccc---ceEEecCCCcccChhhHHHhh
Q 002627 838 GVKRERECVMCLSEEM---SVVFLPCAHQVVCTTCNELHE 874 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~---~vvllPCgH~~~C~~Ca~~l~ 874 (899)
.......|.||++... .++++||+|+ ||..|...+.
T Consensus 180 F~~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~ 218 (445)
T KOG1814|consen 180 FVNSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYF 218 (445)
T ss_pred HHhhcccceeeehhhcCcceeeecccchH-HHHHHHHHHH
Confidence 3456678999999754 5899999999 9999988754
No 209
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.80 E-value=16 Score=41.44 Aligned_cols=143 Identities=22% Similarity=0.219 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 002627 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ---------------------MKFQSWEKQKALFQEELV 695 (899)
Q Consensus 637 ~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~---------------------k~l~~~EkQk~~LQEEL~ 695 (899)
++.-|-.+.+.++.|++.=|++|..=...++.+.++.+... ..+.....+...|+.|+.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~ 89 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVE 89 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556677777777775544444444444333222 112222233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhhhhhHH
Q 002627 696 TEKRKVVQLLQELDQAKALQEQLEA-----RWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNLMRYKD 770 (899)
Q Consensus 696 ~eK~KLa~LeqELeqak~~~kqlE~-----kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~qr~k~ 770 (899)
..+.++.+++-+..=++..+...+. ..+..-...+.++.++|..+.+.++++...+.-+++. .....|.-.|+.
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEk-eEl~~ERD~yk~ 168 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEK-EELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4444444433332222222222211 0011113455667777777777777777665433322 223334445556
Q ss_pred HHHHHHHHHH
Q 002627 771 DIHRLEKEIS 780 (899)
Q Consensus 771 dikrLEqEls 780 (899)
.+.||..|++
T Consensus 169 K~~RLN~ELn 178 (319)
T PF09789_consen 169 KAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHH
Confidence 6666666665
No 210
>PRK00106 hypothetical protein; Provisional
Probab=92.73 E-value=29 Score=42.07 Aligned_cols=11 Identities=45% Similarity=0.558 Sum_probs=4.8
Q ss_pred hcHHHHHHHHH
Q 002627 584 KDKAELKTLRQ 594 (899)
Q Consensus 584 ~d~~eLk~LR~ 594 (899)
++-+||-.|..
T Consensus 30 ~~~~~~~~~~A 40 (535)
T PRK00106 30 KEAAELTLLNA 40 (535)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 211
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=32 Score=42.54 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=4.6
Q ss_pred HHHhHHHHHHH
Q 002627 592 LRQEKEEVERL 602 (899)
Q Consensus 592 LR~EkEe~eRl 602 (899)
.|...++++|.
T Consensus 93 ~r~~~~~~dr~ 103 (716)
T KOG4593|consen 93 ARNYEAEVDRK 103 (716)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 212
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.54 E-value=2.3 Score=44.43 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKE 730 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkake 730 (899)
.+...++-...+++|+.+.+..+.-++..+..++....++-.+|-+....-.
T Consensus 138 ~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 138 ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566777888888888888888888888888888888888876554433
No 213
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=0.073 Score=58.50 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=27.3
Q ss_pred ecCCCcccChhhHHHhhhcCCCCCCCCccccc
Q 002627 858 LPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889 (899)
Q Consensus 858 lPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~ 889 (899)
-||||. +|..|.+.+...+...||.|.....
T Consensus 21 n~C~H~-lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 21 NECGHR-LCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred ccccch-HHHHHHHHHHhcCCCCCCcccchhh
Confidence 399999 9999999998888889999987653
No 214
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.41 E-value=31 Score=41.79 Aligned_cols=8 Identities=38% Similarity=0.314 Sum_probs=2.9
Q ss_pred HHHHhHHH
Q 002627 591 TLRQEKEE 598 (899)
Q Consensus 591 ~LR~EkEe 598 (899)
.|+-+.+|
T Consensus 193 ~L~~ql~E 200 (563)
T TIGR00634 193 FLQFQLEE 200 (563)
T ss_pred HHHHHHHH
Confidence 33333333
No 215
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.26 E-value=50 Score=43.68 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=24.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVS 670 (899)
Q Consensus 623 al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ 670 (899)
.+.....++..+-+.++.+|.+...+..+.-.......+....++-+.
T Consensus 865 e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~ 912 (1294)
T KOG0962|consen 865 ELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLK 912 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchh
Confidence 333334444444445555555555555555555555555554444333
No 216
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.21 E-value=2.4 Score=47.76 Aligned_cols=39 Identities=31% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
+.+.+..+.++..+.++....+.+||.+.+.+.+|++..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555555554443
No 217
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.20 E-value=31 Score=41.20 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT 676 (899)
Q Consensus 616 kL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~ 676 (899)
.+.+.+..+.....++.........++.+++++..+.|+.+..+.|..+.+.+..++-+..
T Consensus 54 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~ 114 (475)
T PRK10361 54 QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQ 114 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777888888888889999999999999988888888776666555554444
No 218
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=0.1 Score=56.14 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=39.8
Q ss_pred ccccccccccc----ccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccc
Q 002627 841 RERECVMCLSE----EMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQR 890 (899)
Q Consensus 841 ~~~~CvIC~d~----~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~ 890 (899)
..-.|+||.+. ...+++-||||+ +|..|+..++... ..||+|..+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D-~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKD-MVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhcccc-ccccCCCCcCcc
Confidence 45789999985 345788899999 9999999987654 489999998864
No 219
>PRK01156 chromosome segregation protein; Provisional
Probab=92.14 E-value=43 Score=42.60 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=14.7
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHh
Q 002627 543 QDKRDEIILKLIPRVRELHNQLHEW 567 (899)
Q Consensus 543 ~D~Kde~il~Lv~r~~el~~~~~~~ 567 (899)
++.++++|-.+-.++.++++++.+-
T Consensus 464 ~e~~~e~i~~~~~~i~~l~~~i~~l 488 (895)
T PRK01156 464 EEKSNHIINHYNEKKSRLEEKIREI 488 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555543
No 220
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.11 E-value=27 Score=43.56 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHhhCCC
Q 002627 206 LEKYILAELVCVLREVRPF 224 (899)
Q Consensus 206 l~~rSL~GLVafL~~~~P~ 224 (899)
|=.+=++=||+.+...+||
T Consensus 428 iYSkLFD~lV~~iNqsiPF 446 (1259)
T KOG0163|consen 428 IYSKLFDWLVGRINQSIPF 446 (1259)
T ss_pred HHHHHHHHHHHHhhccccc
Confidence 4455577888888888886
No 221
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=92.05 E-value=0.043 Score=61.12 Aligned_cols=54 Identities=22% Similarity=0.548 Sum_probs=44.8
Q ss_pred ccccccccccccccccceEEe-cCCCcccChhhHHHhhhcCCCCCCCCcccccceEe
Q 002627 838 GVKRERECVMCLSEEMSVVFL-PCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIP 893 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~~vvll-PCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ir 893 (899)
.+.....|.+|..-..++..+ -|-|. ||..|+...... ...||.|...|.+...
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~-~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEE-SKYCPTCDIVIHKTHP 65 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHH-hccCCccceeccCccc
Confidence 456678899999988886655 49999 999999988765 5799999999988763
No 222
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.02 E-value=0.057 Score=66.03 Aligned_cols=45 Identities=27% Similarity=0.646 Sum_probs=37.6
Q ss_pred cccccccccccceEEecCCCcccChhhHHHhhhcC-CCCCCCCccccc
Q 002627 843 RECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQG-MKDCPSCRSPIQ 889 (899)
Q Consensus 843 ~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~-~~kCPiCR~~I~ 889 (899)
..|.+|.+ ....++.+|+|. +|..|........ ...||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 888899999999 9999998765443 346999998765
No 223
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.94 E-value=0.057 Score=63.07 Aligned_cols=49 Identities=24% Similarity=0.545 Sum_probs=40.2
Q ss_pred cccccccccccccccceEEecCCCcccChhhHHHhh----hcCCCCCCCCcccc
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHE----KQGMKDCPSCRSPI 888 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~----~~~~~kCPiCR~~I 888 (899)
......|.+|.+...+.+...|.|. ||.-|...+. .....+||.|-.+.
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3456789999999999999999999 9999996543 33446999998665
No 224
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.79 E-value=35 Score=42.41 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhHHHhHHHHHHHHHhhh
Q 002627 554 IPRVRELHNQLHEWTEWANQKVMQAARRLSK 584 (899)
Q Consensus 554 v~r~~el~~~~~~~~dWA~qkvmQaa~rl~~ 584 (899)
|+|..|--.+|+++-+-|-++.-|+.+ +++
T Consensus 107 lrq~eekn~slqerLelaE~~l~qs~r-ae~ 136 (916)
T KOG0249|consen 107 LRQNEEKNRSLQERLELAEPKLQQSLR-AET 136 (916)
T ss_pred hchhHHhhhhhhHHHHHhhHhhHhHHh-hhh
Confidence 566667777888888999999999998 544
No 225
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.74 E-value=46 Score=42.11 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=95.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (899)
Q Consensus 626 kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~Le 705 (899)
....+++...+.-..+|+..+.+..+.|..+.+-.|.+..+.++..+.....+.-...|.|+.-..+-.+....++..++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e 672 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34456777777888888888888888888888888888888888888777777777778887777777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 706 QELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIE 747 (899)
Q Consensus 706 qELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE 747 (899)
-++.++...+..++..+..+....++..+.-.+...++++..
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 888888888888888888888888887777666555555543
No 226
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.57 E-value=7 Score=50.45 Aligned_cols=6 Identities=33% Similarity=0.977 Sum_probs=2.9
Q ss_pred EecCCC
Q 002627 857 FLPCAH 862 (899)
Q Consensus 857 llPCgH 862 (899)
++|-.|
T Consensus 711 ~~~~~~ 716 (1021)
T PTZ00266 711 IVPSSH 716 (1021)
T ss_pred cccCcc
Confidence 345555
No 227
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.51 E-value=0.055 Score=67.96 Aligned_cols=168 Identities=26% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHhh----HHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 002627 550 ILKLIPRVRELHNQLHEWT----EWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (899)
Q Consensus 550 il~Lv~r~~el~~~~~~~~----dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~ 625 (899)
|-++-.+++||+.++.+-. ++. ..+.-+=+|+..=..||.-++.+.+.++|.++.-.. .+.|+...|.
T Consensus 576 ~kk~q~qlkdlq~~lee~~~~~~~~~-~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~-------el~e~~~~~~ 647 (859)
T PF01576_consen 576 LKKLQAQLKDLQRELEEAQRAREELR-EQLAVSERRLRALQAELEELREALEQAERARKQAES-------ELDELQERLN 647 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3445566666666665522 222 222223345555667777778888887777553322 3555666666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 626 KASGQVERANSAVRRLEVENTALRQEMEAAKLRA-------AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK 698 (899)
Q Consensus 626 kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a-------~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK 698 (899)
.++.+........++||.++..|..+.|-+.-.+ -........+...-...+-....+|+.+.-|+..+...+
T Consensus 648 ~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq 727 (859)
T PF01576_consen 648 ELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQ 727 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666777777777777776665433222 222222222333333334455556666666666666666
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002627 699 RKVVQLLQELD-QAKALQEQLEARWRQE 725 (899)
Q Consensus 699 ~KLa~LeqELe-qak~~~kqlE~kwrQe 725 (899)
.+|..++...- ..+..+..++.++++.
T Consensus 728 ~rl~e~E~~~~~~~k~~i~kLE~ri~eL 755 (859)
T PF01576_consen 728 ARLEEAEQSALKGGKKQIAKLEARIREL 755 (859)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHhhhcccccHHHHHhHHHHHH
Confidence 66666665322 2344455555554443
No 228
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.51 E-value=34 Score=40.10 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002627 674 KKTQMKFQSWEKQKALFQEEL 694 (899)
Q Consensus 674 kk~~k~l~~~EkQk~~LQEEL 694 (899)
.+..||+..+|.++.-||+.|
T Consensus 204 N~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999873
No 229
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.48 E-value=28 Score=39.17 Aligned_cols=185 Identities=21% Similarity=0.279 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 596 KEEVERLKKEKQILEENTMKKLSEMENALCKAS-------GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQE 668 (899)
Q Consensus 596 kEe~eRlkk~k~~lee~t~kkL~e~E~al~kas-------~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e 668 (899)
||.++.|.+.-.+=||.-.|.+...-..|.-+. ..|+.-.-.-.+||+|..-.|....+|--...+++++-+.
T Consensus 37 Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrd 116 (305)
T PF14915_consen 37 KEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRD 116 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHH
Confidence 444555555555555544444444433333333 3333333344677777777777777777777766654332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEA 748 (899)
Q Consensus 669 ~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~ 748 (899)
+ |...+.-.-.|-.=..++.-++...+.+..-|.++|..+......++.++....-+..|...-+|.-.+.+.+++-
T Consensus 117 l---elafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~ 193 (305)
T PF14915_consen 117 L---ELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQC 193 (305)
T ss_pred H---HHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1112222333444445555567888888888999999999999999999999998888888777777777776655
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHHHHHHHHHHHHHhh
Q 002627 749 SAKSKEDMIKSKAETNLMRYKDDIHRLEKEISQLRL 784 (899)
Q Consensus 749 ~~k~keealr~K~E~E~qr~k~dikrLEqElsrLr~ 784 (899)
..+ +++..-..++..+.+|...-.-++..+.+|+.
T Consensus 194 q~K-E~e~m~qne~~kv~k~~~Kqes~eERL~Qlqs 228 (305)
T PF14915_consen 194 QIK-EIEHMYQNEQDKVNKYIGKQESLEERLSQLQS 228 (305)
T ss_pred HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 33333334444445555555555555555543
No 230
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.47 E-value=22 Score=37.86 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK 698 (899)
Q Consensus 619 e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK 698 (899)
-.|..|+-|.+=-+.|+..+-+..+...-+-.+.|.+--.|.=.+..|.++.+--+.....+.+++.--.++.+.+...+
T Consensus 64 ~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e 143 (205)
T KOG1003|consen 64 AQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYE 143 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444444444444444444444444444444444433444444444444444444444444444444444333
Q ss_pred HHHHHH
Q 002627 699 RKVVQL 704 (899)
Q Consensus 699 ~KLa~L 704 (899)
.+|..+
T Consensus 144 ~~ik~l 149 (205)
T KOG1003|consen 144 EELKEL 149 (205)
T ss_pred HHHHHH
Confidence 333333
No 231
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.45 E-value=0.056 Score=66.53 Aligned_cols=101 Identities=27% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhhhcHHHHHHHHHhHHH-HHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002627 570 WANQKVMQAARRLSKDKAELKTLRQEKEE-VERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTAL 648 (899)
Q Consensus 570 WA~qkvmQaa~rl~~d~~eLk~LR~EkEe-~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~l 648 (899)
+..++.-.+...|..-..++..++...|+ ..+|+.++..+..........+.+.+.....+++.+...+..++.+...+
T Consensus 118 ~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l 197 (722)
T PF05557_consen 118 QLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEEL 197 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 23344444444444555556666777777777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002627 649 RQEMEAAKLRAAESAASCQEVS 670 (899)
Q Consensus 649 r~emEaakl~a~Es~~~~~e~~ 670 (899)
+.+.+..+....+....+.++.
T Consensus 198 ~~~le~~~~~~~e~e~~~~~L~ 219 (722)
T PF05557_consen 198 KEQLEELQSELQEAEQQLQELQ 219 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777776666665555543
No 232
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.29 E-value=46 Score=41.25 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
|-.+...+.....|.+|.--.|..||..+..+|.+++..+..+.+.-. ++.-+..+.-....+.+-+..+....|..
T Consensus 515 lKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~---Ev~~kl~ksEen~r~~e~e~~~k~kq~k~ 591 (786)
T PF05483_consen 515 LKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGE---EVKCKLDKSEENARSIECEILKKEKQMKI 591 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhHHHHHHHhhhHHHHHH
Confidence 445566666677788888889999999999999999998887776643 45455555545555566666666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002627 697 EKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 697 eK~KLa~LeqELeqak~~~kql 718 (899)
...|+..++++.+.-...++.+
T Consensus 592 lenk~~~LrKqvEnk~K~ieeL 613 (786)
T PF05483_consen 592 LENKCNNLRKQVENKNKNIEEL 613 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 7777766666666544444443
No 233
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=91.15 E-value=41 Score=40.41 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHhhhhHH
Q 002627 615 KKLSEMENALCKASGQVE 632 (899)
Q Consensus 615 kkL~e~E~al~kas~Q~~ 632 (899)
+|.+++|.....+..++.
T Consensus 187 ~rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 187 KRTLKKEIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455544444444444
No 234
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.01 E-value=7.2 Score=37.66 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQ 745 (899)
Q Consensus 682 ~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEr 745 (899)
.++.++.-|+..|+.+|.-..+|.++.++++..+.+++..-....+.+.++.+++.+.++.++.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888888888888888888877777777777777777666555554
No 235
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.97 E-value=13 Score=38.12 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhhHHHH
Q 002627 617 LSEMENALCKASGQVERA 634 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra 634 (899)
+.++++.+....++++..
T Consensus 97 l~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 97 LDQLQERIQELESELEKL 114 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444433333333
No 236
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.92 E-value=38 Score=39.90 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=13.3
Q ss_pred hHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHH
Q 002627 568 TEWANQKVMQAARRLSKDKAELKTLRQEKEEV 599 (899)
Q Consensus 568 ~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~ 599 (899)
.+..++..-++..=|...+ +.++.+.+++
T Consensus 152 ~~~~~~~~~~~~~fl~~ql---~~~~~~L~~a 180 (498)
T TIGR03007 152 LGSKRQDSDSAQRFIDEQI---KTYEKKLEAA 180 (498)
T ss_pred cccchhhhHHHHHHHHHHH---HHHHHHHHHH
Confidence 3334444444444444443 4445555443
No 237
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.81 E-value=44 Score=40.16 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=5.1
Q ss_pred HHHHHHhHHHHHH
Q 002627 548 EIILKLIPRVREL 560 (899)
Q Consensus 548 e~il~Lv~r~~el 560 (899)
+.+-.|-.++.++
T Consensus 123 ~El~~l~~~l~~l 135 (511)
T PF09787_consen 123 QELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444444
No 238
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.79 E-value=0.063 Score=67.42 Aligned_cols=174 Identities=26% Similarity=0.337 Sum_probs=8.9
Q ss_pred HHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhh---hhHHHHHHHHHHhh
Q 002627 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTM---KKLSEMENALCKAS 628 (899)
Q Consensus 552 ~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~---kkL~e~E~al~kas 628 (899)
.|-..+-|.++.+..+.|=+..=++|++ +|. .-|+.|++.+..+-+.|..||.++. -||.|+|....+-
T Consensus 669 ~l~~eleE~~~~~~~~~ek~kka~~~~~-~l~------~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~- 740 (859)
T PF01576_consen 669 QLEEELEEEQSEAEAAEEKAKKAQAQAA-QLA------EELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKG- 740 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Confidence 3333444444444444444433333333 233 3467888999999999999999865 4689999855442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (899)
Q Consensus 629 ~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqEL 708 (899)
....|.+||..+.+|-.+.+.......+...+++.+-++-+.....+..=-++...+++.+...+.||..+.+++
T Consensus 741 -----~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~ 815 (859)
T PF01576_consen 741 -----GKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQL 815 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 223555555555555566777777777776666666565555544444444445667777777777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 709 DQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 709 eqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
+++.........++|..+...++....++.
T Consensus 816 eeaEe~~~~~~~k~Rk~q~elee~~e~~~~ 845 (859)
T PF01576_consen 816 EEAEEEASRNLAKYRKLQRELEEAEERAEA 845 (859)
T ss_dssp ---------------SSSSHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777777777666665544443
No 239
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.77 E-value=13 Score=37.23 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~ 650 (899)
.+++..+.+...++++.+..+.+|+..++.+..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~er 87 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELER 87 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777777777755554444
No 240
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.68 E-value=43 Score=39.81 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=10.5
Q ss_pred HhhhcHHHHHHHHHhHHHHHHH
Q 002627 581 RLSKDKAELKTLRQEKEEVERL 602 (899)
Q Consensus 581 rl~~d~~eLk~LR~EkEe~eRl 602 (899)
+..+..-...++++-|+-+|.|
T Consensus 353 k~~kQqvfvDiinkLk~niEeL 374 (527)
T PF15066_consen 353 KITKQQVFVDIINKLKENIEEL 374 (527)
T ss_pred HhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444455555555554
No 241
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.52 E-value=26 Score=37.15 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=9.0
Q ss_pred HHhHHHHHHHH
Q 002627 552 KLIPRVRELHN 562 (899)
Q Consensus 552 ~Lv~r~~el~~ 562 (899)
+|+..|.||+.
T Consensus 5 dL~~~v~dL~~ 15 (193)
T PF14662_consen 5 DLLSCVEDLQL 15 (193)
T ss_pred HHHHHHHHHHH
Confidence 68888999984
No 242
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=90.52 E-value=12 Score=42.17 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hH-----------------HHHHhhHHHHhhhhhHHHHHHHHHH
Q 002627 720 ARWRQEEKAKEELVMQASSIRKEREQIEASAK----SK-----------------EDMIKSKAETNLMRYKDDIHRLEKE 778 (899)
Q Consensus 720 ~kwrQeqkakeE~laqaE~ER~ErEraE~~~k----~k-----------------eealr~K~E~E~qr~k~dikrLEqE 778 (899)
.+++.....+++++.++...+.++++.....+ .. +..+++-+....-.|||.+.+.|+|
T Consensus 219 vRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQe 298 (302)
T PF09738_consen 219 VRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQE 298 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 35666666667777777666655554333222 00 1134555566667888888888888
Q ss_pred HH
Q 002627 779 IS 780 (899)
Q Consensus 779 ls 780 (899)
+.
T Consensus 299 it 300 (302)
T PF09738_consen 299 IT 300 (302)
T ss_pred hc
Confidence 75
No 243
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=90.42 E-value=19 Score=37.79 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 666 CQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD-------QAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 666 ~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELe-------qak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
+.+++-+-.....+-..++.--..|.+.|+..+.....|..++. .+...+..-+..|+.+++.....+. .
T Consensus 62 Le~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~---~ 138 (182)
T PF15035_consen 62 LEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLS---S 138 (182)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---c
Confidence 33344444444445555555555555554444444444444433 3444555555677766666554422 2
Q ss_pred HHHHHHH---HHHHHhhHHHHHhhHHHHhhhhhHHHHHH
Q 002627 739 IRKEREQ---IEASAKSKEDMIKSKAETNLMRYKDDIHR 774 (899)
Q Consensus 739 ER~ErEr---aE~~~k~keealr~K~E~E~qr~k~dikr 774 (899)
|...+-. .=...++-+..++-..|.++...+.|+-+
T Consensus 139 eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r 177 (182)
T PF15035_consen 139 EHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFAR 177 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2211111 11223444555555555555444444433
No 244
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.34 E-value=56 Score=40.63 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 648 LRQEMEAAKLRAAESAASCQEVSKREKKTQ 677 (899)
Q Consensus 648 lr~emEaakl~a~Es~~~~~e~~ekEkk~~ 677 (899)
+|.|..+.+++...-.+.+++.++.++|.-
T Consensus 865 lR~eakRir~EQekd~~~Fqe~LK~~kKe~ 894 (1187)
T KOG0579|consen 865 LRNEAKRIRIEQEKDMRAFQERLKQEKKEF 894 (1187)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444455566666666666653
No 245
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.26 E-value=10 Score=46.09 Aligned_cols=92 Identities=23% Similarity=0.184 Sum_probs=64.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (899)
Q Consensus 621 E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~K 700 (899)
.-++.=++.||+..--.||.||.=+++-|. ||-+.|- -.+..+-.++++|.||..|-.|+.+.|-|
T Consensus 124 ~LQvsvLteqVeaQgEKIrDLE~cie~kr~-----kLnatEE---------mLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 124 QLQVSVLTEQVEAQGEKIRDLETCIEEKRN-----KLNATEE---------MLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHHHHHHHh-----hhchHHH---------HHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Confidence 335577788899999999999987655544 4444432 22333456689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 701 VVQLLQELDQAKALQEQLEARWRQEE 726 (899)
Q Consensus 701 La~LeqELeqak~~~kqlE~kwrQeq 726 (899)
++-++++..+.+..+...|..+++..
T Consensus 190 ltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 190 LTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 99999877665555555544444433
No 246
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.11 E-value=38 Score=38.36 Aligned_cols=38 Identities=34% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 693 ELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKE 730 (899)
Q Consensus 693 EL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkake 730 (899)
+|...|.+|.....++...+..+.+++.+..+.....+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444444444444333333
No 247
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=89.89 E-value=0.14 Score=58.96 Aligned_cols=54 Identities=22% Similarity=0.541 Sum_probs=44.6
Q ss_pred cccccccccccccccceEE-ecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeE
Q 002627 839 VKRERECVMCLSEEMSVVF-LPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~vvl-lPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irV 894 (899)
+.....|.+|+.-..+.+. ..|||. ||..|...+... ...||.|+..+.....+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSN-HQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhcc-CcCCcccccccchhhcc
Confidence 5667899999999888888 499999 999999988664 57999999887654433
No 248
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.86 E-value=39 Score=38.08 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhhhhhH
Q 002627 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNLMRYK 769 (899)
Q Consensus 690 LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~qr~k 769 (899)
|..++...+.+...+...++++-.....+...+-+.-+..++....+...+.+...+...... ...++....
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e--------~~ee~~~~~ 234 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDE--------LHEEFRNLQ 234 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHH
Confidence 335555555555555555555555554444454444445555555555444443333221111 111223334
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002627 770 DDIHRLEKEISQLRLKT 786 (899)
Q Consensus 770 ~dikrLEqElsrLr~k~ 786 (899)
.+|..+++.|..|+...
T Consensus 235 ~elre~~k~ik~l~~~~ 251 (294)
T COG1340 235 NELRELEKKIKALRAKE 251 (294)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666665555433
No 249
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=49 Score=39.20 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHhhHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 002627 754 EDMIKSKAETNLMRYKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 754 eealr~K~E~E~qr~k~dikrLEqElsrLr~k~ 786 (899)
.....+|.+.|..+...|-+.|++++..+....
T Consensus 394 i~gniRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 394 IDGNIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466777777777777777777776555443
No 250
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=89.79 E-value=16 Score=44.78 Aligned_cols=11 Identities=0% Similarity=-0.472 Sum_probs=6.6
Q ss_pred ccChhhHHHhh
Q 002627 864 VVCTTCNELHE 874 (899)
Q Consensus 864 ~~C~~Ca~~l~ 874 (899)
.||..|-..++
T Consensus 485 qF~~NrRP~Yy 495 (811)
T KOG4364|consen 485 QFDKNRRPGYY 495 (811)
T ss_pred hhccccCCccc
Confidence 36777765544
No 251
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.68 E-value=31 Score=36.64 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 694 LVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 694 L~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
|...+.++..+++++..++-..+.++.+..+.++..+++...++.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777777777777777777777766666666665554
No 252
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.61 E-value=24 Score=39.89 Aligned_cols=121 Identities=22% Similarity=0.224 Sum_probs=64.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 587 AELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (899)
Q Consensus 587 ~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~ 666 (899)
.|-..||. |+.+|+++...+|+.-..=+.+-=. |+.-||..|-.|.-+.+.-..
T Consensus 174 eEN~~LR~---Ea~~L~~et~~~EekEqqLv~dcv~-------QL~~An~qia~LseELa~k~E---------------- 227 (306)
T PF04849_consen 174 EENEQLRS---EASQLKTETDTYEEKEQQLVLDCVK-------QLSEANQQIASLSEELARKTE---------------- 227 (306)
T ss_pred HHHHHHHH---HHHHhhHHHhhccHHHHHHHHHHHH-------HhhhcchhHHHHHHHHHHHHH----------------
Confidence 45566665 4666777777777754443444433 455555555555533321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 667 ~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
.-...+..+..+-.|+..+|..+...-.+-..+.+.|..++..+.++....++.+....|....+.+
T Consensus 228 -----e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 228 -----ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111223333444455555544444444445566666666777777777777776666666555544
No 253
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.35 E-value=0.3 Score=54.33 Aligned_cols=55 Identities=7% Similarity=0.077 Sum_probs=46.5
Q ss_pred CccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeE
Q 002627 837 GGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894 (899)
Q Consensus 837 ~~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irV 894 (899)
+.+...++|.+|-.....+++.||+|..+|.+|+..- -...||.|..-....++|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccceeeeec
Confidence 3556778999999999999999999999999999832 346999999887777766
No 254
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.99 E-value=17 Score=42.87 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~~eK~KLa~LeqELeqa 711 (899)
..+|+.+...+.-+...+.|+.++.+|+...
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~ 401 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEE 401 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 255
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=88.93 E-value=19 Score=43.37 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 614 MKKLSEMENALCKASG-QVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSK 671 (899)
Q Consensus 614 ~kkL~e~E~al~kas~-Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~e 671 (899)
.+++.||.+.|.-.-. .+++....-++.| +++..+..-|..++.|.++.+.-+|...
T Consensus 181 ~~r~~e~Q~qv~qsl~~el~~i~~~~q~~e-qi~~~~~~~e~kr~Eaerk~~~~qEe~R 238 (591)
T KOG2412|consen 181 KRRLLEEQNQVLQSLDTELQAIQREKQRKE-QIRERKERSEEKREEAERKRRAHQEELR 238 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3446677776544332 4444333333333 2333344444445555555444444333
No 256
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.90 E-value=14 Score=45.87 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=5.7
Q ss_pred CCCCcccCcCc
Q 002627 526 GYAGILSDDTS 536 (899)
Q Consensus 526 ~~~~~~~d~~~ 536 (899)
....|.|...+
T Consensus 155 ~ii~Is~~~~d 165 (754)
T TIGR01005 155 RIIAIEFRSED 165 (754)
T ss_pred EEEEEEEecCC
Confidence 34566666333
No 257
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.84 E-value=85 Score=40.61 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 639 RRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKK-------TQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQA 711 (899)
Q Consensus 639 r~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk-------~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqa 711 (899)
-.||.+.++.+.++......--|.-+.|+++.++.+. ....+..+-++..++|..|...+.-|.+++.+|+++
T Consensus 279 eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 279 EELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred hhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3344444555555555555555555555555555322 234555555666666666777777777777666654
No 258
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.68 E-value=0.28 Score=54.92 Aligned_cols=49 Identities=24% Similarity=0.601 Sum_probs=37.0
Q ss_pred ccccccccccc----cceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccce
Q 002627 842 ERECVMCLSEE----MSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 842 ~~~CvIC~d~~----~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ 891 (899)
+..|+.|++.. ++..-.|||-. +|..|...+...-..+||-||...+.-
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhcccc
Confidence 34499999863 34444567877 899999988776677999999877643
No 259
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=88.68 E-value=19 Score=44.18 Aligned_cols=11 Identities=9% Similarity=-0.285 Sum_probs=5.9
Q ss_pred CCCCCcccccc
Q 002627 880 DCPSCRSPIQR 890 (899)
Q Consensus 880 kCPiCR~~I~~ 890 (899)
-|-.||-++.+
T Consensus 486 F~~NrRP~YyG 496 (811)
T KOG4364|consen 486 FDKNRRPGYYG 496 (811)
T ss_pred hccccCCcccc
Confidence 45556655543
No 260
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.67 E-value=73 Score=39.63 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC-------QEVSKREK-KTQMKFQSWEKQKA 688 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~-------~e~~ekEk-k~~k~l~~~EkQk~ 688 (899)
+.++-.+|+++..|..|-.-. +..||..|-...++|.+++.|...++ ....+--+ ...++..+||++-.
T Consensus 589 v~dLR~~L~~~Eq~aarrEd~---~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~ 665 (961)
T KOG4673|consen 589 VEDLRQTLSKKEQQAARREDM---FRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREER 665 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 666777777777766664433 34678888888889988888876554 22333333 33577888999766
Q ss_pred HHHHHHHHHHH
Q 002627 689 LFQEELVTEKR 699 (899)
Q Consensus 689 ~LQEEL~~eK~ 699 (899)
-|-+.|..-+.
T Consensus 666 ~l~~rL~dSQt 676 (961)
T KOG4673|consen 666 SLNERLSDSQT 676 (961)
T ss_pred HHHHhhhhHHH
Confidence 66666654443
No 261
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.34 E-value=12 Score=45.62 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWR 723 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwr 723 (899)
.+++..+++....|++|+...+.++.++++++..++..++++..+.+
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666655555444
No 262
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.25 E-value=53 Score=37.58 Aligned_cols=130 Identities=18% Similarity=0.277 Sum_probs=74.9
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 579 ARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (899)
Q Consensus 579 a~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~ 658 (899)
.||+-..-.-|+..|+-.||-+...+.-++--+.-.-.|.....-+-|+.+..++-...+++++-||+.+..+.++.+.+
T Consensus 77 irk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e 156 (401)
T PF06785_consen 77 IRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQE 156 (401)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555444445555555554443333333322223334666666777888888888888999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHHHHHHHH
Q 002627 659 AAESAASCQEVSKREKKTQMKFQSWEK--Q---------KALFQEELVTEKRKVVQLLQEL 708 (899)
Q Consensus 659 a~Es~~~~~e~~ekEkk~~k~l~~~Ek--Q---------k~~LQEEL~~eK~KLa~LeqEL 708 (899)
.-|.+..-+++.+.-....-..+.+-. | +.+.|..|....+|+..|-.|+
T Consensus 157 ~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei 217 (401)
T PF06785_consen 157 CGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEI 217 (401)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555554443333322222222 2 3344555555555555544443
No 263
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.22 E-value=53 Score=37.49 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hh---HHHHHhhHHHHhhhhhHHHH
Q 002627 703 QLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASA-------KS---KEDMIKSKAETNLMRYKDDI 772 (899)
Q Consensus 703 ~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~-------k~---keealr~K~E~E~qr~k~di 772 (899)
.+-.+|+.++..+.+++...+...-.++|+..+-+.-+....|+-... .. ..+++. .|.+.+++.+
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi----~ENRyL~erl 205 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALI----MENRYLKERL 205 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHH----HHHHHHHHHH
Confidence 344455555555555555555444444444444443333333331110 01 122221 2335566677
Q ss_pred HHHHHHHHHHhhccchhHHHHH
Q 002627 773 HRLEKEISQLRLKTDSSKIAAL 794 (899)
Q Consensus 773 krLEqElsrLr~k~d~~RrAaL 794 (899)
..++.|..-++.....=|.++-
T Consensus 206 ~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 206 KQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766655544343333
No 264
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.19 E-value=61 Score=38.14 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 002627 770 DDIHRLEKEISQLR 783 (899)
Q Consensus 770 ~dikrLEqElsrLr 783 (899)
..+..++..+.+..
T Consensus 305 ~~l~~a~~~l~~~~ 318 (457)
T TIGR01000 305 SKIKSLKEDSQKGV 318 (457)
T ss_pred HHHHHHHHHHhCCE
Confidence 34444445444333
No 265
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.06 E-value=33 Score=42.67 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 682 ~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
.++....-++......+.++..+++++..++.....+........+..++.+...-.
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 280 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNT 280 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555666666666555555555555555555544444433
No 266
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=88.06 E-value=0.17 Score=56.12 Aligned_cols=57 Identities=11% Similarity=0.178 Sum_probs=47.0
Q ss_pred ccccccccccccccccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceEeE
Q 002627 838 GVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPV 894 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irV 894 (899)
.......|++|+.+..-+.+.+|+|-+||..|......++.+.||+|...+.....|
T Consensus 132 ~~~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 132 PKGATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred cccCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 445677899999999999999999999999998776555667799999877765544
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=0.7 Score=57.16 Aligned_cols=44 Identities=23% Similarity=0.607 Sum_probs=34.1
Q ss_pred ccccccccc-ccceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccce
Q 002627 843 RECVMCLSE-EMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 843 ~~CvIC~d~-~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~ 891 (899)
..|..|-.. ..-+|..-|||. +-..|... +..+||-|+....++
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e~----~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLED----KEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhcc----CcccCCccchhhhhh
Confidence 579999875 567788899999 77888873 347999999855443
No 268
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=87.79 E-value=0.24 Score=56.82 Aligned_cols=34 Identities=29% Similarity=0.661 Sum_probs=30.6
Q ss_pred ccccccccccccccceEEecCCCcccChhhHHHhh
Q 002627 840 KRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHE 874 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPCgH~~~C~~Ca~~l~ 874 (899)
+++..|+||..-..+.+++||+|. +|..|+..+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccH-HHHHHHHhhc
Confidence 457889999999999999999999 9999998764
No 269
>PRK11281 hypothetical protein; Provisional
Probab=87.78 E-value=1.1e+02 Score=40.55 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 614 MKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (899)
Q Consensus 614 ~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emE 653 (899)
...|++.+..+-.+.++.+||.+..-+......+|+.+..
T Consensus 141 Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 141 QNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446666666666666666666666555555555555443
No 270
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=87.73 E-value=16 Score=41.11 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (899)
Q Consensus 637 ~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~Leq 706 (899)
.+.+|.-|...|..|..++|..|-.=++-+..-=+-+---.+=..-|-.+++.||-||...+.||+-.++
T Consensus 67 q~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaER 136 (351)
T PF07058_consen 67 QVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAER 136 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778888888888877666544422222223566777999999999999998888765544
No 271
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=87.56 E-value=34 Score=36.68 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
+...+.+|.++..|++=...++..||- +.+ =...........+|..+..++.+|..
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeL----l~~--------------------~g~naW~~~n~~Le~~~~~le~~l~~ 154 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLEL----LSK--------------------YGENAWLIHNEQLEAMLKRLEKELAK 154 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------------------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999888888877762 110 01112234455566667777777777
Q ss_pred HHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 697 EKRKVVQLLQE--L--DQAKALQEQLEARWRQEEKAKEELVMQASSIRKER 743 (899)
Q Consensus 697 eK~KLa~LeqE--L--eqak~~~kqlE~kwrQeqkakeE~laqaE~ER~Er 743 (899)
.|.++..+.++ . .++...+..++.+|++.-...-++.......+.++
T Consensus 155 ~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei 205 (221)
T PF05700_consen 155 LKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEI 205 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655432 1 23566677888888877666655544444433333
No 272
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=87.35 E-value=88 Score=39.06 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=9.3
Q ss_pred HHHHHHHHhHHH
Q 002627 587 AELKTLRQEKEE 598 (899)
Q Consensus 587 ~eLk~LR~EkEe 598 (899)
.||+.||.||+.
T Consensus 478 ~ELqqLReERdR 489 (739)
T PF07111_consen 478 LELQQLREERDR 489 (739)
T ss_pred HHHHHHHHHHHH
Confidence 678888888765
No 273
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.31 E-value=57 Score=36.88 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=36.6
Q ss_pred hhhh-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 613 TMKK-LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASC 666 (899)
Q Consensus 613 t~kk-L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~ 666 (899)
.|+. -..|...|...+.+++.-+..-.++..+|..|+..+...--+-..++..+
T Consensus 104 kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~ 158 (309)
T PF09728_consen 104 KRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHF 158 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 34578888888888888888888888888888876665444444333333
No 274
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=87.30 E-value=48 Score=35.97 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 621 ENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (899)
Q Consensus 621 E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~K 700 (899)
+-.|+.+..++.++...+-.+......+..+.+.+...+.+-+..-+.++.+....+-+- .-.++..|++.+..++..
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~--al~~~~~le~~~~~~~~~ 107 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLARE--ALEEKQSLEDLAKALEAE 107 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433333333332221110 111122333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 701 VVQLLQELDQAKALQEQLEARWRQEEKAKEEL 732 (899)
Q Consensus 701 La~LeqELeqak~~~kqlE~kwrQeqkakeE~ 732 (899)
+.++....++++..+..++.+|.+..+.+..+
T Consensus 108 ~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 108 LQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 275
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=87.12 E-value=44 Score=35.35 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 002627 587 AELKTLRQEKEEVERLKKEKQI 608 (899)
Q Consensus 587 ~eLk~LR~EkEe~eRlkk~k~~ 608 (899)
.+|-.||++.-+.++..++.++
T Consensus 18 ~eL~~l~~eq~~~e~e~ke~H~ 39 (185)
T PF08703_consen 18 QELLKLREEQYESEKELKEEHL 39 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887777776
No 276
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.02 E-value=46 Score=35.50 Aligned_cols=116 Identities=9% Similarity=0.124 Sum_probs=68.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKR 699 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~ 699 (899)
++-.++....+|..+...+-.+......+..+.+.....+.+-......++++.+..+-+.-. .++...++.+...+.
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al--~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL--IEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 444445555566666666667776666777777777777777776666666666555433211 134444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 700 KVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQAS 737 (899)
Q Consensus 700 KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE 737 (899)
.+..+....++++..+..++.++.+.+.....+.+++.
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666665555555554443
No 277
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=86.88 E-value=56 Score=36.34 Aligned_cols=101 Identities=23% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHhhH
Q 002627 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSI-RKEREQIEASAKSKEDMIKSK 760 (899)
Q Consensus 682 ~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~E-R~ErEraE~~~k~keealr~K 760 (899)
...+++..-+.+++.++.+...++++...+....++.+..+++..+..++.+.++.+. ..+++++.... .+....+++
T Consensus 194 q~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~-e~~l~~k~~ 272 (297)
T PF02841_consen 194 QADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQ-ERLLEQKLQ 272 (297)
T ss_dssp HH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344444445555555566555666666555555555555555555555554443321 11111111111 111111222
Q ss_pred H--HHhhhhhHHHHHHHHHHHHHHh
Q 002627 761 A--ETNLMRYKDDIHRLEKEISQLR 783 (899)
Q Consensus 761 ~--E~E~qr~k~dikrLEqElsrLr 783 (899)
. +.-.+.+...+..+++||..|+
T Consensus 273 eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 273 EQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2 2223667778888999888764
No 278
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=86.74 E-value=86 Score=38.31 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=6.2
Q ss_pred HHHHHHHHhhcc
Q 002627 775 LEKEISQLRLKT 786 (899)
Q Consensus 775 LEqElsrLr~k~ 786 (899)
++.++..|+...
T Consensus 515 ~~sel~sl~~~~ 526 (607)
T KOG0240|consen 515 LKSELQSLQEPS 526 (607)
T ss_pred hHHHHHhhhhcc
Confidence 445555555544
No 279
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.64 E-value=0.2 Score=61.67 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=10.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhh
Q 002627 128 QLEELVLSNLDAIFKSAIKKI 148 (899)
Q Consensus 128 ~Lr~~LL~~Ih~~Y~~Al~rL 148 (899)
+.=..|+..|-.||.+-|...
T Consensus 70 ~NLk~l~~~i~~yy~e~L~~~ 90 (713)
T PF05622_consen 70 SNLKKLLRNIKSYYQEELGQQ 90 (713)
T ss_dssp HHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 334456677777776655543
No 280
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.64 E-value=41 Score=36.43 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 670 SKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEAR 721 (899)
Q Consensus 670 ~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~k 721 (899)
....+..+++...|..|+..|.+++...+.++..++...+++...+...+.+
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~e 85 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQE 85 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556777777888888777777776666666666555555444444333
No 281
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.56 E-value=35 Score=40.34 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQ 691 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQ 691 (899)
+.++..|.+|+..++
T Consensus 388 q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 388 QTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555544444
No 282
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.21 E-value=0.41 Score=52.52 Aligned_cols=46 Identities=28% Similarity=0.596 Sum_probs=36.7
Q ss_pred ccccccccccccc------eEEecCCCcccChhhHHHhhhcCCCCCCCCcccc
Q 002627 842 ERECVMCLSEEMS------VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI 888 (899)
Q Consensus 842 ~~~CvIC~d~~~~------vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I 888 (899)
...|.||-+...+ .-++.|||. +|..|+..+.......||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 3579999885433 344569999 999999998877777999999985
No 283
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.17 E-value=24 Score=40.79 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVEN 645 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~en 645 (899)
+++.|..+..+++.+...+.....++
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555555555555555444
No 284
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.12 E-value=81 Score=37.41 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=17.9
Q ss_pred HHHHHHHHhhHHHhHHHHHHHHHhh
Q 002627 559 ELHNQLHEWTEWANQKVMQAARRLS 583 (899)
Q Consensus 559 el~~~~~~~~dWA~qkvmQaa~rl~ 583 (899)
.+-+++.+--+||++|--|-+-+..
T Consensus 39 ~~l~~~ee~e~~~~~~~A~~~~~~k 63 (438)
T COG4487 39 RILNTLEEFEKEANEKRAQYRSAKK 63 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777899998777666655
No 285
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=85.97 E-value=90 Score=37.81 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=35.8
Q ss_pred CCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhh
Q 002627 542 PQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLS 583 (899)
Q Consensus 542 p~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~ 583 (899)
..+.-+.+|.....++..|+.+|.+-+.++.+++.++-..-.
T Consensus 245 ~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 245 SESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQR 286 (582)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999998887655444
No 286
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=85.93 E-value=51 Score=34.99 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=71.7
Q ss_pred hhHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 615 KKLSEME--NALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR-----AAESAASCQEVSKREKKTQMKFQSWEKQK 687 (899)
Q Consensus 615 kkL~e~E--~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~-----a~Es~~~~~e~~ekEkk~~k~l~~~EkQk 687 (899)
..|...| ..|.++-.++....-.+..+... -+..+..+|. -..-..++..+..+--+.....+.+++++
T Consensus 49 ~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~----~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L 124 (216)
T cd07627 49 EALSSLELSKSLSDLLAALAEVQKRIKESLER----QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESEL 124 (216)
T ss_pred HHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 44444444444444444444432 1222222222 22334556677777777778888888888
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 688 ALFQEELVTE-------KRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 688 ~~LQEEL~~e-------K~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
.+.+..+... ..|+..++.++.++..+..+...+|....+....-+...+.
T Consensus 125 ~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~ 182 (216)
T cd07627 125 SKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER 182 (216)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776665 35777777777777777777777777766665555555544
No 287
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=85.91 E-value=89 Score=37.86 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=12.8
Q ss_pred HHHHhhCCCCChHHHHHHHHHhCC
Q 002627 216 CVLREVRPFFSTGDAMWCLLICDM 239 (899)
Q Consensus 216 afL~~~~P~LS~~dAm~yLL~ad~ 239 (899)
-|+..+.||- .+++-|+.--+.
T Consensus 34 d~f~~~vP~~--e~lv~~~e~~~~ 55 (582)
T PF09731_consen 34 DFFEEYVPYG--EELVDYIEEEES 55 (582)
T ss_pred HHHHHhCCcH--HHHHHHHhhhcc
Confidence 3666677764 556666655443
No 288
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=85.81 E-value=99 Score=38.17 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=15.7
Q ss_pred CCcccCcCcccccCCCCchhHHHHHHhHHH
Q 002627 528 AGILSDDTSLEHLVPQDKRDEIILKLIPRV 557 (899)
Q Consensus 528 ~~~~~d~~~~~~~vp~D~Kde~il~Lv~r~ 557 (899)
.-|=||-+-.....-++...+.|.+-|..+
T Consensus 149 ~~FfFDGE~I~~la~~~~~~~~l~~Ai~~L 178 (650)
T TIGR03185 149 DLFFFDGEKIEALANPDRLASLLKEAIEVL 178 (650)
T ss_pred HHhcccHHHHHHHhccccchHHHHHHHHHH
Confidence 445566222323445577777666554443
No 289
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.73 E-value=0.34 Score=53.46 Aligned_cols=43 Identities=23% Similarity=0.579 Sum_probs=34.3
Q ss_pred cccccccccccceEEec-CCCcccChhhHHHhhhcCCCCCCCCcc
Q 002627 843 RECVMCLSEEMSVVFLP-CAHQVVCTTCNELHEKQGMKDCPSCRS 886 (899)
Q Consensus 843 ~~CvIC~d~~~~vvllP-CgH~~~C~~Ca~~l~~~~~~kCPiCR~ 886 (899)
+.|+.|..-.++.+-.| |+|. ||.+|+..-.-...-.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 78999999887777776 7888 9999998654434569999976
No 290
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.28 E-value=15 Score=39.32 Aligned_cols=23 Identities=9% Similarity=0.293 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHH
Q 002627 613 TMKKLSEMENALCKASGQVERAN 635 (899)
Q Consensus 613 t~kkL~e~E~al~kas~Q~~ra~ 635 (899)
.+.+|-++|.+|.++..+++.++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555544
No 291
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=85.14 E-value=82 Score=36.59 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 002627 574 KVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQ 650 (899)
Q Consensus 574 kvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~ 650 (899)
+.++++..|..+.. .++ ..-...+...+...+..-++|+.|++.+..++.-|+.+....+..+|..+..|+.
T Consensus 215 ~e~~~S~~LR~~i~---~~l--~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ 286 (384)
T PF03148_consen 215 KERQSSAQLREDID---SIL--EQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEK 286 (384)
T ss_pred HHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555555554433 111 2334566777788888889999999999999888888888888888877766655
No 292
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=84.65 E-value=90 Score=36.69 Aligned_cols=62 Identities=31% Similarity=0.329 Sum_probs=36.9
Q ss_pred ccCCCCchhHHHHH-----HhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHH
Q 002627 539 HLVPQDKRDEIILK-----LIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVER 601 (899)
Q Consensus 539 ~~vp~D~Kde~il~-----Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eR 601 (899)
.|.|+|.----||. || |.+|-=--||++|+|-||-|.-.--.-+--..-|+.=|+|-||.|-
T Consensus 101 ~w~~ddpDi~~~l~gvnSGLv-rAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEg 167 (558)
T PF15358_consen 101 PWAPDDPDITELLEGVNSGLV-RAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEG 167 (558)
T ss_pred CCCCCCccHHHHHhhhcccce-ecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHH
Confidence 46666654433443 44 7777778899999999998753322222223334445666666543
No 293
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=84.53 E-value=0.78 Score=38.01 Aligned_cols=41 Identities=27% Similarity=0.600 Sum_probs=31.3
Q ss_pred ccccccc--cccceEEecCC-----CcccChhhHHHhhhcC-CCCCCCCc
Q 002627 844 ECVMCLS--EEMSVVFLPCA-----HQVVCTTCNELHEKQG-MKDCPSCR 885 (899)
Q Consensus 844 ~CvIC~d--~~~~vvllPCg-----H~~~C~~Ca~~l~~~~-~~kCPiCR 885 (899)
.|.||++ ...+.++.||. |+ +=..|...|.... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 56677889995 55 5679999987543 45899995
No 294
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.49 E-value=83 Score=36.13 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=15.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 621 ENALCKASGQVERANSAVRRLEVENTALRQEME 653 (899)
Q Consensus 621 E~al~kas~Q~~ra~~~vr~lE~ena~lr~emE 653 (899)
|++|+.|.+|+=.+ .+|++-..+.-+|.=.|
T Consensus 62 e~qlk~aa~~llq~--kirk~~e~~eglr~i~e 92 (401)
T PF06785_consen 62 EKQLKTAAGQLLQT--KIRKITEKDEGLRKIRE 92 (401)
T ss_pred HHHHHHHHHHHHHH--HHHHHHhccHHHHHHHH
Confidence 44455555555332 45555544444444333
No 295
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=84.41 E-value=63 Score=34.72 Aligned_cols=114 Identities=19% Similarity=0.268 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 663 AASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE 742 (899)
Q Consensus 663 ~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E 742 (899)
.+.+..+...--..+.-+.++|+--.-|....+..|.-+..+.+-=+-++..+..+..++++.++....+.+-++. .
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAee---k 144 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEE---K 144 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3444444433333355566666665555555555555555444444445555555555666555555555444432 1
Q ss_pred HHHHHHHHhhHHHHHhhHHHHhhhhhHHHHHHHHHHHHHHh
Q 002627 743 REQIEASAKSKEDMIKSKAETNLMRYKDDIHRLEKEISQLR 783 (899)
Q Consensus 743 rEraE~~~k~keealr~K~E~E~qr~k~dikrLEqElsrLr 783 (899)
++. +-.+...++.+.+.+...+...+++.+-.+..|.
T Consensus 145 L~~----ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 145 LEK----ANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE 181 (207)
T ss_pred HHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1123444455555555555555555555554443
No 296
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.35 E-value=22 Score=38.47 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 634 ANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (899)
Q Consensus 634 a~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~ 713 (899)
.+-.+-+-|-+||.+|+ -|+.......++++.+.-..+..+++...+++..|-++++....++..++.++..++.
T Consensus 103 iD~elvrkEl~nAlvRA-----GLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~ 177 (290)
T COG4026 103 IDVELVRKELKNALVRA-----GLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177 (290)
T ss_pred cCHHHHHHHHHHHHHHH-----HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666665 3334444445555555544455555555555555555555555554444444444444
Q ss_pred HHHHH
Q 002627 714 LQEQL 718 (899)
Q Consensus 714 ~~kql 718 (899)
...++
T Consensus 178 E~s~L 182 (290)
T COG4026 178 ENSRL 182 (290)
T ss_pred HHHHH
Confidence 44333
No 297
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=0.25 Score=54.84 Aligned_cols=47 Identities=28% Similarity=0.517 Sum_probs=31.7
Q ss_pred cccccccccccc-ceEEecCCCcccChhhHHHhhhcCCCCCCCCcccccceE
Q 002627 842 ERECVMCLSEEM-SVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRI 892 (899)
Q Consensus 842 ~~~CvIC~d~~~-~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~i 892 (899)
.-.|.-|--... ---++||.|+ ||.+|+..-. .+-||.|--.|..+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~---dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDS---DKICPLCDDRVQRIE 137 (389)
T ss_pred eEeecccCCcceeeecccccchh-hhhhhhhcCc---cccCcCcccHHHHHH
Confidence 344666644321 1235799999 9999998642 468999997776543
No 298
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.16 E-value=10 Score=45.00 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=32.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 623 ALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKR 672 (899)
Q Consensus 623 al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ek 672 (899)
-|+.+.+|+-.-...+..|+.+|..+++|.|..+.+..--..+++....-
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 35666677777777888888888888888886654444333344444333
No 299
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.02 E-value=63 Score=34.40 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kql 718 (899)
+....-.|++...|-.+|.+.+.+...+.-+.+-++...+++
T Consensus 87 ~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 87 LAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 344444455555555444444444444444444444333333
No 300
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=83.91 E-value=36 Score=37.61 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 664 ASCQEVSKREKKTQMKFQSWEKQ-----------KALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEEL 732 (899)
Q Consensus 664 ~~~~e~~ekEkk~~k~l~~~EkQ-----------k~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~ 732 (899)
.+|+....--+..+...++|-.+ -..|.++|...|..-..|.++++.+.+...-+..++.-.++...+.
T Consensus 69 ~seq~~~~~a~~elq~~ks~~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~ 148 (330)
T KOG2991|consen 69 LSEQDFKVMARDELQLRKSWKQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQEC 148 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------HHHHHhhHHHHhhhhhHHHHHHHHHHHHHHhhccchh
Q 002627 733 VMQASSIRKEREQIEASAKS-------KEDMIKSKAETNLMRYKDDIHRLEKEISQLRLKTDSS 789 (899)
Q Consensus 733 laqaE~ER~ErEraE~~~k~-------keealr~K~E~E~qr~k~dikrLEqElsrLr~k~d~~ 789 (899)
..++...+....=.-...|+ .+.-+|+|.|.+.. ++.|+.++.+|+.|+...|+.
T Consensus 149 ~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~t--k~Klee~QnelsAwkFTPdS~ 210 (330)
T KOG2991|consen 149 TSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQT--KDKLEEAQNELSAWKFTPDSK 210 (330)
T ss_pred HHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHH--HHHHHHHHhhhheeeecCCCc
No 301
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=83.91 E-value=98 Score=36.50 Aligned_cols=67 Identities=25% Similarity=0.414 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhHHHhHHHHHHHHHhhhc----HHHHHHHHHhHHHHHH-HHHHHHHhHHHhhhhHHHHHHH
Q 002627 557 VRELHNQLHEWTEWANQKVMQAARRLSKD----KAELKTLRQEKEEVER-LKKEKQILEENTMKKLSEMENA 623 (899)
Q Consensus 557 ~~el~~~~~~~~dWA~qkvmQaa~rl~~d----~~eLk~LR~EkEe~eR-lkk~k~~lee~t~kkL~e~E~a 623 (899)
--.||-.+.--.|+--+|.|--.+||..| ..-|+-||.|+=+.+- |..+...|-..--||+..+|-.
T Consensus 145 k~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~e 216 (552)
T KOG2129|consen 145 KLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQE 216 (552)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666778889999999999854 3456888888655432 2333444444445555555543
No 302
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.89 E-value=16 Score=39.71 Aligned_cols=25 Identities=20% Similarity=0.656 Sum_probs=18.8
Q ss_pred cccChhhHHHhhhcCCCCCCCCcccc
Q 002627 863 QVVCTTCNELHEKQGMKDCPSCRSPI 888 (899)
Q Consensus 863 ~~~C~~Ca~~l~~~~~~kCPiCR~~I 888 (899)
+-.|..|-..|-. ....||.|.+.=
T Consensus 194 MK~C~sC~qqIHR-NAPiCPlCK~Ks 218 (230)
T PF10146_consen 194 MKTCQSCHQQIHR-NAPICPLCKAKS 218 (230)
T ss_pred cchhHhHHHHHhc-CCCCCccccccc
Confidence 4469999998865 346999997653
No 303
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=83.68 E-value=72 Score=35.63 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 665 SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRK 700 (899)
Q Consensus 665 ~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~K 700 (899)
.+.++.++......++..||-+..++.+.+...+.|
T Consensus 222 e~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 222 EVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444
No 304
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=83.65 E-value=2 Score=34.11 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=31.2
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHhCCchHhHhhc
Q 002627 213 ELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (899)
Q Consensus 213 GLVafL~~~~P~LS~~dAm~yLL~ad~dL~~A~a~ 247 (899)
.+|..|++.||.++.....++|..++.|+..|+.+
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~ 37 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDA 37 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 57889999999999999999999999999998864
No 305
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.62 E-value=1.3e+02 Score=37.64 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 694 LVTEKRKVVQLLQELDQAKALQEQ 717 (899)
Q Consensus 694 L~~eK~KLa~LeqELeqak~~~kq 717 (899)
++...-++..--+++.++.+.+.+
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q 262 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQ 262 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444433
No 306
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=83.44 E-value=2.1 Score=34.08 Aligned_cols=37 Identities=16% Similarity=0.019 Sum_probs=33.4
Q ss_pred HhHHHHHHhhCCCCChHHHHHHHHHhCCchHhHhhcc
Q 002627 212 AELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 248 (899)
Q Consensus 212 ~GLVafL~~~~P~LS~~dAm~yLL~ad~dL~~A~a~~ 248 (899)
...|..|+..||.++...+.++|..++.|+..||..-
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~L 39 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNL 39 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678899999999999999999999999999998643
No 307
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.31 E-value=30 Score=43.69 Aligned_cols=19 Identities=21% Similarity=-0.031 Sum_probs=10.5
Q ss_pred hHHHHHHHhHHHHHHhhCC
Q 002627 205 QLEKYILAELVCVLREVRP 223 (899)
Q Consensus 205 ~l~~rSL~GLVafL~~~~P 223 (899)
+...+.|..|...+..+.+
T Consensus 240 ~e~~~il~~L~~~i~~~~~ 258 (771)
T TIGR01069 240 CEIEKILRTLSEKVQEYLL 258 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655544
No 308
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=83.20 E-value=37 Score=42.99 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=19.7
Q ss_pred hHHHHHHHhHHHHHHhhCCCCChHHHHHHHHHhCCchHhHhhc
Q 002627 205 QLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAM 247 (899)
Q Consensus 205 ~l~~rSL~GLVafL~~~~P~LS~~dAm~yLL~ad~dL~~A~a~ 247 (899)
+.+.+.|..|...+..+.+.|-. +.. .++.+|+..|.+.
T Consensus 245 ~~~~~il~~l~~~i~~~~~~l~~---~~~-~l~~lD~l~a~a~ 283 (782)
T PRK00409 245 QEIERILKELSAKVAKNLDFLKF---LNK-IFDELDFIFARAR 283 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHH
Confidence 44556666666666665554321 111 2345566555543
No 309
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.18 E-value=1.6e+02 Score=38.45 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=9.4
Q ss_pred ccccccccccccc
Q 002627 839 VKRERECVMCLSE 851 (899)
Q Consensus 839 l~~~~~CvIC~d~ 851 (899)
+.....|++|-..
T Consensus 498 l~~~~~cplcgs~ 510 (1042)
T TIGR00618 498 ELQEEPCPLCGSC 510 (1042)
T ss_pred cCCCCCCCCCCCC
Confidence 4456779999874
No 310
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=82.86 E-value=53 Score=36.92 Aligned_cols=14 Identities=7% Similarity=0.060 Sum_probs=6.6
Q ss_pred CCcccCcCcccccCCCC
Q 002627 528 AGILSDDTSLEHLVPQD 544 (899)
Q Consensus 528 ~~~~~d~~~~~~~vp~D 544 (899)
..|..+ .|.+|.+.
T Consensus 60 ~~v~V~---~G~~VkkG 73 (346)
T PRK10476 60 VELAVT---ENQAVKKG 73 (346)
T ss_pred EEEEeC---CCCEEcCC
Confidence 445555 23455443
No 311
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=82.51 E-value=82 Score=34.59 Aligned_cols=145 Identities=23% Similarity=0.253 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhhhc----HHHHHHHHHhHHHHHHHHHHHHHhH------HHhhhhHHHHHHHHHHhhh-hH--------H
Q 002627 572 NQKVMQAARRLSKD----KAELKTLRQEKEEVERLKKEKQILE------ENTMKKLSEMENALCKASG-QV--------E 632 (899)
Q Consensus 572 ~qkvmQaa~rl~~d----~~eLk~LR~EkEe~eRlkk~k~~le------e~t~kkL~e~E~al~kas~-Q~--------~ 632 (899)
.+|+-+.++|||+= .+-....+..++=-.+..++-...| +-.+..+.-.|..|..-.+ ++ .
T Consensus 45 ~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn 124 (239)
T PF05276_consen 45 TKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLN 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHH
Confidence 35677778888743 2233333333332222222111111 1133335566666655442 32 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 633 RANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 633 ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
.|...|...|.+......+-...-....+.+..++.+.++.++..++-.-|-..+..+++.|+..|.++..|++++.++|
T Consensus 125 ~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK 204 (239)
T PF05276_consen 125 HATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAK 204 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444556666777777788888888888888888888888888888888888888777
Q ss_pred HHHH
Q 002627 713 ALQE 716 (899)
Q Consensus 713 ~~~k 716 (899)
..-.
T Consensus 205 ~~Y~ 208 (239)
T PF05276_consen 205 SRYS 208 (239)
T ss_pred HHHH
Confidence 5543
No 312
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.46 E-value=21 Score=37.46 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 632 ERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 632 ~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
++.+..+.+++.+.+.++.+.+.++..-.++ +.....+.++..+++++..|+.+|..
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444445444444333333 22222355666666777777766663
No 313
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.43 E-value=1.5e+02 Score=37.54 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=9.0
Q ss_pred HHHHHHhHHHHH
Q 002627 548 EIILKLIPRVRE 559 (899)
Q Consensus 548 e~il~Lv~r~~e 559 (899)
|-++.||.+|.+
T Consensus 774 e~m~~lv~kVn~ 785 (1259)
T KOG0163|consen 774 ETMLELVAKVNK 785 (1259)
T ss_pred HHHHHHHHHHHH
Confidence 567788888875
No 314
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.36 E-value=43 Score=42.43 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=14.7
Q ss_pred HHHHHHHhhhcHHHHHHHHHh
Q 002627 575 VMQAARRLSKDKAELKTLRQE 595 (899)
Q Consensus 575 vmQaa~rl~~d~~eLk~LR~E 595 (899)
+...|++++-+...+..-++-
T Consensus 490 a~~iA~~~Glp~~ii~~A~~~ 510 (782)
T PRK00409 490 AFEIAKRLGLPENIIEEAKKL 510 (782)
T ss_pred HHHHHHHhCcCHHHHHHHHHH
Confidence 567888888888776554443
No 315
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=82.35 E-value=38 Score=40.71 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=7.6
Q ss_pred cHHHHHHHHHhHHH
Q 002627 585 DKAELKTLRQEKEE 598 (899)
Q Consensus 585 d~~eLk~LR~EkEe 598 (899)
|..+...||.+++.
T Consensus 179 ~~~vv~~l~~~~dk 192 (489)
T PF05262_consen 179 DEKVVQELREDKDK 192 (489)
T ss_pred cHHHHHHHhhcccc
Confidence 44555566665543
No 316
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=82.21 E-value=64 Score=33.10 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 693 ELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEE 731 (899)
Q Consensus 693 EL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE 731 (899)
++...+.+-.++++.++++....++-...+++..+....
T Consensus 75 qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~ 113 (152)
T PF07321_consen 75 QVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQ 113 (152)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445554444444444444444433333
No 317
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.01 E-value=81 Score=34.20 Aligned_cols=30 Identities=10% Similarity=0.322 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 686 QKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 686 Qk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
+...++..+...+.++.+++++++++....
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~~~~ 100 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIEETR 100 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444333333
No 318
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=81.78 E-value=1.2 Score=50.86 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=31.9
Q ss_pred ccccccccccccceEEe-cC----------------CCc---c-cChhhHHHhhhcCC------------CCCCCCcccc
Q 002627 842 ERECVMCLSEEMSVVFL-PC----------------AHQ---V-VCTTCNELHEKQGM------------KDCPSCRSPI 888 (899)
Q Consensus 842 ~~~CvIC~d~~~~vvll-PC----------------gH~---~-~C~~Ca~~l~~~~~------------~kCPiCR~~I 888 (899)
...|.-|+....++.+. -| ..- - -|..|..+|..++. ..||.||+.|
T Consensus 271 ~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 271 LEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 44588888888777765 23 221 1 28889887754332 4799999987
Q ss_pred c
Q 002627 889 Q 889 (899)
Q Consensus 889 ~ 889 (899)
-
T Consensus 351 C 351 (358)
T PF10272_consen 351 C 351 (358)
T ss_pred e
Confidence 4
No 319
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=81.34 E-value=38 Score=37.85 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhhhh
Q 002627 688 ALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNLMR 767 (899)
Q Consensus 688 ~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~qr 767 (899)
+.|.-.|++-.++|...+-|++++|.++..+++-|-+++=-.-|+...+.+-|+|+.+++.-...=-..| .......|+
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL-~ekDkGiQK 149 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL-AEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhhhHHH
Confidence 3333334444444444444555555555555555655554444443333333444444433211111111 112333466
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 002627 768 YKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 768 ~k~dikrLEqElsrLr~k~ 786 (899)
|=.||.--.+.++.|=..+
T Consensus 150 YFvDINiQN~KLEsLLqsM 168 (305)
T PF15290_consen 150 YFVDINIQNKKLESLLQSM 168 (305)
T ss_pred HHhhhhhhHhHHHHHHHHH
Confidence 6666655455555444433
No 320
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.33 E-value=24 Score=36.86 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 636 SAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 636 ~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
+.+..++.....++.|+..+.+.-.+-+.++..+...-.+....+..-+..+..|+.++...+.++..+..++.+....+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777666666666655555554444444444444455555555555444444444444444433333
No 321
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=81.26 E-value=0.84 Score=46.63 Aligned_cols=54 Identities=24% Similarity=0.650 Sum_probs=37.3
Q ss_pred ccccccccccccceEEecCCCc-c-----cC------hhhHHHhhhc------------------------------CCC
Q 002627 842 ERECVMCLSEEMSVVFLPCAHQ-V-----VC------TTCNELHEKQ------------------------------GMK 879 (899)
Q Consensus 842 ~~~CvIC~d~~~~vvllPCgH~-~-----~C------~~Ca~~l~~~------------------------------~~~ 879 (899)
+..|+|||+.+-++||+-|--. - +| ..|.+++.+. ..-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 4579999999999999877422 0 33 2465554310 023
Q ss_pred CCCCCcccccceEeEE
Q 002627 880 DCPSCRSPIQRRIPVR 895 (899)
Q Consensus 880 kCPiCR~~I~~~irVf 895 (899)
.||.||..|.+.+.|.
T Consensus 82 ~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVE 97 (162)
T ss_pred cCccccCceeceEEch
Confidence 6999999999887764
No 322
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.25 E-value=2e+02 Score=38.19 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhhH
Q 002627 618 SEMENALCKASGQV 631 (899)
Q Consensus 618 ~e~E~al~kas~Q~ 631 (899)
.++|.++..+..|+
T Consensus 105 ~~Leq~l~~~~~~L 118 (1109)
T PRK10929 105 DALEQEILQVSSQL 118 (1109)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 323
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.22 E-value=1.4 Score=54.43 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHhhHHHhHH------HHHHHHHhhhcHHHHHHHHHhHHHHH----HHHHHHHHhHHHhhhhHHH
Q 002627 550 ILKLIPRVRELHNQLHEWTEWANQK------VMQAARRLSKDKAELKTLRQEKEEVE----RLKKEKQILEENTMKKLSE 619 (899)
Q Consensus 550 il~Lv~r~~el~~~~~~~~dWA~qk------vmQaa~rl~~d~~eLk~LR~EkEe~e----Rlkk~k~~lee~t~kkL~e 619 (899)
+..|--+...|+.++..|+--.+.- -...+++|.....+--.|..+...++ .+....+.|+. .+.+
T Consensus 307 l~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~----e~~~ 382 (722)
T PF05557_consen 307 LAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQ----EKEQ 382 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHH
Confidence 3344456677777777777655542 23444444433333333333322211 11111111111 2233
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKL 657 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl 657 (899)
+...+.++...+......+++||+....+..|.+..+-
T Consensus 383 l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~ 420 (722)
T PF05557_consen 383 LLKEIEELEASLEALKKLIRRLERQKALATKERDYLRA 420 (722)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666667788888888888888777663
No 324
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.20 E-value=46 Score=40.10 Aligned_cols=66 Identities=26% Similarity=0.321 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~e 697 (899)
..++..|..+..|+..|++.......|... ..+++...|+++..+.++|+..
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~a----------------------------L~~rL~~aE~ek~~l~eeL~~a 467 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRA----------------------------LQKRLESAEKEKESLEEELKEA 467 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666643333 3445666666777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 002627 698 KRKVVQLLQELDQA 711 (899)
Q Consensus 698 K~KLa~LeqELeqa 711 (899)
+.++.+++.||.-.
T Consensus 468 ~~~i~~LqDEL~TT 481 (518)
T PF10212_consen 468 NQNISRLQDELETT 481 (518)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776644
No 325
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.14 E-value=79 Score=37.20 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT 676 (899)
Q Consensus 619 e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~ 676 (899)
+.+..|-++...+......+-++-.++..+|+|-++.+-...+.+..++++++.-...
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555556666666666666666666655555554443333
No 326
>PF15556 Zwint: ZW10 interactor
Probab=81.07 E-value=85 Score=33.80 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
.|.|+.+.+=-+..++.....+.+|.++.++|..+++..
T Consensus 133 eK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 133 EKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555444444444555555555555555544443
No 327
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=81.07 E-value=85 Score=33.78 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT 676 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~ 676 (899)
+.++|..+..+-++.++. ....+.+...+-.|.+.+.-....-++++..+.++=.+.
T Consensus 46 ~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~ 102 (207)
T PF05010_consen 46 MEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ 102 (207)
T ss_pred HHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555544443332 222233333333444444333333444455554444433
No 328
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.70 E-value=1e+02 Score=34.44 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002627 660 AESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQAS-- 737 (899)
Q Consensus 660 ~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE-- 737 (899)
+-+...+.++.+..+..++.+.++-.|+..++..+...+.++.++..++.+++..++.++.++++.+...++..+-+.
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred ------------------------------HHHHHHHHHHHHHhhHHHHHhhHHHHhhhhhHHHHHHHHHHHHHHhh
Q 002627 738 ------------------------------SIRKEREQIEASAKSKEDMIKSKAETNLMRYKDDIHRLEKEISQLRL 784 (899)
Q Consensus 738 ------------------------------~ER~ErEraE~~~k~keealr~K~E~E~qr~k~dikrLEqElsrLr~ 784 (899)
.--+.+-.-....+.+++.-+...+...+.+..-...++..+..|..
T Consensus 114 G~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~ 190 (265)
T COG3883 114 GTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNS 190 (265)
T ss_pred CChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 329
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=80.51 E-value=2.7 Score=38.67 Aligned_cols=32 Identities=25% Similarity=0.622 Sum_probs=24.8
Q ss_pred cccccccccccccc--cceEEecCCCcccChhhHH
Q 002627 839 VKRERECVMCLSEE--MSVVFLPCAHQVVCTTCNE 871 (899)
Q Consensus 839 l~~~~~CvIC~d~~--~~vvllPCgH~~~C~~Ca~ 871 (899)
+.....|.+|...- ...++.||||. +...|..
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 45567799999864 55677899998 7888864
No 330
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=80.35 E-value=1.3e+02 Score=35.52 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=37.6
Q ss_pred HHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002627 565 HEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEV 643 (899)
Q Consensus 565 ~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ 643 (899)
..-.+|-++.+-++-.+|..--..|...|.+..-+ +-.+ ......++.+++.++..+..++..+.+.+..++.
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~~~----~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI--LPDQ----EGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--Cccc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456766666666666665555555555433211 0000 0112345666666666666666666555555553
No 331
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=80.27 E-value=16 Score=41.41 Aligned_cols=87 Identities=34% Similarity=0.508 Sum_probs=55.2
Q ss_pred HHhhhcHHHHHHHHHhHHHH-HHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 580 RRLSKDKAELKTLRQEKEEV-ERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLR 658 (899)
Q Consensus 580 ~rl~~d~~eLk~LR~EkEe~-eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~ 658 (899)
+|+..-..||..+-+|||.+ +|||.+.+. ||. .|+.||.+|..|-.|.|+..
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~-----------~e~--------------~~~~l~~~~~~~~~~~~~~~-- 60 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQES-----------FEK--------------KIRQLEEQNELIIKEREDLQ-- 60 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------HHH--------------HHHHHHHHhHHHHHHHHHHH--
Confidence 45555566777777777775 466666666 443 78889999999988888764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 659 AAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 659 a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
-+-+.|+|++ .+.|+.|...+.||..---+|..++
T Consensus 61 --~qyrecqell-----------------~lyq~ylseqq~kl~~s~~~l~~~~ 95 (328)
T PF15369_consen 61 --QQYRECQELL-----------------SLYQKYLSEQQEKLTMSLSELSAAR 95 (328)
T ss_pred --HHHHHHHHHH-----------------HHHHHHHHHHHHHHhcCHHHhhhhh
Confidence 2333444443 4556667777777555444444443
No 332
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=80.21 E-value=51 Score=30.68 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 619 EMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQ 677 (899)
Q Consensus 619 e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~ 677 (899)
++.+.|..+....+.....+..++.....+....+.++-........+.+.++..+..+
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~l 62 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQL 62 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666677777777777777777777777777777777776666653
No 333
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.14 E-value=0.8 Score=57.09 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=36.4
Q ss_pred cccccccccccccc-------cceEEecCCCcccChhhHHHhhhc-CCCCCCCCcccccc
Q 002627 839 VKRERECVMCLSEE-------MSVVFLPCAHQVVCTTCNELHEKQ-GMKDCPSCRSPIQR 890 (899)
Q Consensus 839 l~~~~~CvIC~d~~-------~~vvllPCgH~~~C~~Ca~~l~~~-~~~kCPiCR~~I~~ 890 (899)
.....+|.||+.-- .+-..-.|.|. |-..|.-.|..+ +..+||.||..|+-
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 44567899999721 11222359999 889999988765 34699999988763
No 334
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=80.07 E-value=77 Score=32.70 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002627 633 RANSAVRRLEVENTALR 649 (899)
Q Consensus 633 ra~~~vr~lE~ena~lr 649 (899)
..+..+..|..+|..|.
T Consensus 47 ~~~~e~~~L~~d~e~L~ 63 (158)
T PF09744_consen 47 EHEVELELLREDNEQLE 63 (158)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 33334444444444333
No 335
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=80.07 E-value=13 Score=44.79 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEEL 732 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~ 732 (899)
.+..+|-.+++|+.||+....|+.++++.+.+.+..+.+++..+.|.+.+.+|+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 344455566677777777777777777777666666666655555555444443
No 336
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=79.98 E-value=1.2e+02 Score=34.81 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhh
Q 002627 551 LKLIPRVRELHNQLHEWTEWANQKVMQAARRLS 583 (899)
Q Consensus 551 l~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~ 583 (899)
++|-.|+.++. ++.|+. ++||+.++-..|-
T Consensus 4 ~~~~~q~a~~~--lk~~~~-~~qk~l~~~~~l~ 33 (332)
T TIGR01541 4 LLLTQQIADRK--LKKLNT-ADEKSLQSRSDEI 33 (332)
T ss_pred HHHHHHHHHHH--HhhhhH-HHHHHHHHHHHHH
Confidence 34445555554 344444 3444444444433
No 337
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=79.92 E-value=46 Score=38.44 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~ 714 (899)
++|.+.+-++-..-++++...+..+...+.+++.++..
T Consensus 143 ~~R~~~L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~ 180 (390)
T PRK15136 143 LNRRVPLGNANLIGREELQHARDAVASAQAQLDVAIQQ 180 (390)
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555444444444444444433
No 338
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.59 E-value=2.1e+02 Score=37.44 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=26.3
Q ss_pred CCchhHHHHHHh--HHHHHHHHHHHHhhHHHhHHHHHHHHHhh
Q 002627 543 QDKRDEIILKLI--PRVRELHNQLHEWTEWANQKVMQAARRLS 583 (899)
Q Consensus 543 ~D~Kde~il~Lv--~r~~el~~~~~~~~dWA~qkvmQaa~rl~ 583 (899)
.+.|-+++-+|+ .+...+...+++...++..++-....++.
T Consensus 162 ~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (1042)
T TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQ 204 (1042)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666664 45666777777777777777766666654
No 339
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=79.58 E-value=2e+02 Score=37.08 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKA-LFQEELVTEKRKVVQLL 705 (899)
Q Consensus 677 ~k~l~~~EkQk~-~LQEEL~~eK~KLa~Le 705 (899)
.......-+|.. .|+.++.-.+.++..+.
T Consensus 688 le~~~~~t~El~~~L~ae~~~~~kei~dLf 717 (984)
T COG4717 688 LEGNIERTKELNDELRAELELHRKEILDLF 717 (984)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444 56666666555555544
No 340
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.06 E-value=48 Score=34.33 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQ 724 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQ 724 (899)
..+.++.+...|+++++..+.++..|++++..+...+..++...+.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666555555544443
No 341
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=79.06 E-value=1.4 Score=54.38 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=22.8
Q ss_pred ccccCCCCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhc
Q 002627 537 LEHLVPQDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKD 585 (899)
Q Consensus 537 ~~~~vp~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d 585 (899)
+|--|-=+.|.+. |++|+.|. .|.+.=+|.+.+.+-..
T Consensus 119 LgcAV~c~~ke~y----I~~I~~Ld-------~~~Q~~im~~Iqev~~~ 156 (713)
T PF05622_consen 119 LGCAVQCENKEEY----IQRIMELD-------ESTQHAIMEAIQEVTSN 156 (713)
T ss_dssp HHHTTSSSTHHHH----HHHHHHS--------HHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCccHHHH----HHHHHCCC-------HHHHHHHHHHHHHHhcc
Confidence 3445555566655 47788777 45555677777766543
No 342
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.95 E-value=1.7e+02 Score=36.42 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIR 740 (899)
Q Consensus 690 LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER 740 (899)
.+.+|...+.++..+..++.......+.+.+.|.++...........|+.+
T Consensus 137 ~~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~r 187 (611)
T KOG2398|consen 137 RKKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESR 187 (611)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888888888888888888888888888887777776666665543
No 343
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=78.69 E-value=1.6e+02 Score=38.27 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=40.1
Q ss_pred CchhHHHHHHhHHHHHHHHHH-HHhhHHHh--------HHHHHHHHHhhh------cHHHHHHHHHhHHHHHHHHHHHHH
Q 002627 544 DKRDEIILKLIPRVRELHNQL-HEWTEWAN--------QKVMQAARRLSK------DKAELKTLRQEKEEVERLKKEKQI 608 (899)
Q Consensus 544 D~Kde~il~Lv~r~~el~~~~-~~~~dWA~--------qkvmQaa~rl~~------d~~eLk~LR~EkEe~eRlkk~k~~ 608 (899)
...=.-.++.+.||+|-=.+. -.|-.-|| -++||.=.+..+ +-.+|--|=+=.-++.++++.|+.
T Consensus 659 kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334455677788887655421 22333333 245555444332 456777777777778888888877
Q ss_pred hHHH
Q 002627 609 LEEN 612 (899)
Q Consensus 609 lee~ 612 (899)
|.--
T Consensus 739 ll~a 742 (1018)
T KOG2002|consen 739 LLKA 742 (1018)
T ss_pred HHHH
Confidence 6544
No 344
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=78.66 E-value=55 Score=41.44 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHh
Q 002627 574 KVMQAARRLSKDKAELKTLRQE 595 (899)
Q Consensus 574 kvmQaa~rl~~d~~eLk~LR~E 595 (899)
-++..|++++-+...++.-++-
T Consensus 484 ~a~~iA~~~Glp~~ii~~A~~~ 505 (771)
T TIGR01069 484 YAFEIAQRYGIPHFIIEQAKTF 505 (771)
T ss_pred HHHHHHHHhCcCHHHHHHHHHH
Confidence 3677899999888877655443
No 345
>PRK11519 tyrosine kinase; Provisional
Probab=78.64 E-value=1.9e+02 Score=36.34 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=16.2
Q ss_pred HHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHH
Q 002627 564 LHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVE 600 (899)
Q Consensus 564 ~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~e 600 (899)
++...+..++.+-++..-|.+. |..||.+.+++|
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~q---l~~l~~~L~~aE 287 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQ---LPEVRSRLDVAE 287 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3334444455455555555443 344555555543
No 346
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=78.62 E-value=2e+02 Score=36.68 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEE 726 (899)
Q Consensus 685 kQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeq 726 (899)
++...++-++..++..+....++++++..+++++++.++|+.
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQek 1036 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEK 1036 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445555666666677777777777777777777766654
No 347
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.40 E-value=37 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=8.0
Q ss_pred CCCCcccCcCcccccCC
Q 002627 526 GYAGILSDDTSLEHLVP 542 (899)
Q Consensus 526 ~~~~~~~d~~~~~~~vp 542 (899)
+|.-|-++ +...-||+
T Consensus 66 ~w~~Vr~~-~G~~GWV~ 81 (206)
T PRK10884 66 NYAQIRDS-KGRTAWIP 81 (206)
T ss_pred CEEEEEeC-CCCEEeEE
Confidence 45555444 23346773
No 348
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.35 E-value=78 Score=34.51 Aligned_cols=11 Identities=18% Similarity=0.601 Sum_probs=6.6
Q ss_pred ccccccccccc
Q 002627 841 RERECVMCLSE 851 (899)
Q Consensus 841 ~~~~CvIC~d~ 851 (899)
....|..|...
T Consensus 193 PMK~C~sC~qq 203 (230)
T PF10146_consen 193 PMKTCQSCHQQ 203 (230)
T ss_pred CcchhHhHHHH
Confidence 34567777654
No 349
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.30 E-value=25 Score=35.83 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002627 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEM 652 (899)
Q Consensus 613 t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~em 652 (899)
+-..|.+|+..+..+..|+......+..|+.+.+.|+.++
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455777777777777777777777777776655555533
No 350
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=78.30 E-value=81 Score=32.36 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 002627 773 HRLEKEISQL 782 (899)
Q Consensus 773 krLEqElsrL 782 (899)
..|++++..|
T Consensus 130 ~el~~ei~~l 139 (173)
T PRK13460 130 SQLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHH
Confidence 3444555433
No 351
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.24 E-value=1.7e+02 Score=35.54 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 668 EVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 668 e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
.+.++++-..-++.+..++++..-+++.....++..|.-+|.+++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~q 246 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQ 246 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 333444444444444444444444444444444444444444433
No 352
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=78.17 E-value=79 Score=32.74 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRK 700 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~K 700 (899)
...+...++.+...++.+...+.+
T Consensus 61 ~~~l~~Ae~~~~eA~~~~~e~e~~ 84 (184)
T CHL00019 61 LNTIRNSEERREEAIEKLEKARAR 84 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333
No 353
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.16 E-value=1.2e+02 Score=36.59 Aligned_cols=62 Identities=19% Similarity=0.099 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
+..+..++.|+.-+|+++..+..+...+..-|...+.+.+++++..++.+....|.+...++
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888888888888888888888888888888877777766555543
No 354
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=78.11 E-value=22 Score=42.90 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=6.0
Q ss_pred HhHHHHHHHHHHhhh
Q 002627 135 SNLDAIFKSAIKKIV 149 (899)
Q Consensus 135 ~~Ih~~Y~~Al~rLp 149 (899)
+-...+-..-|.-||
T Consensus 161 ~Ds~E~ve~~~~~lp 175 (940)
T KOG4661|consen 161 DDSDEEVEDHVYDLP 175 (940)
T ss_pred cchHHHHhhHhhcCC
Confidence 333333333444444
No 355
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.00 E-value=1e+02 Score=33.06 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQL 718 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kql 718 (899)
...+...+.++.....+....+.|+..++.++..++......
T Consensus 65 ~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 65 QLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 334555666666666666666666666666666666655554
No 356
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=77.90 E-value=1.2e+02 Score=33.59 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=13.3
Q ss_pred HHhhHHHhHHHHHHHHHhh
Q 002627 565 HEWTEWANQKVMQAARRLS 583 (899)
Q Consensus 565 ~~~~dWA~qkvmQaa~rl~ 583 (899)
--|.+|--.|..|.=.||-
T Consensus 87 ~aye~Wl~~K~~q~~~klq 105 (264)
T PF13904_consen 87 SAYEEWLSAKEKQEQEKLQ 105 (264)
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 5678888877777666654
No 357
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.85 E-value=1.2e+02 Score=33.81 Aligned_cols=118 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHh-------HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 582 LSKDKAELKTLRQE-------KEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEA 654 (899)
Q Consensus 582 l~~d~~eLk~LR~E-------kEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEa 654 (899)
|+++. +|+.-|.. ..++|+. +..++.....|++.....+-.+..+.+.|...+|.
T Consensus 140 L~kE~-~lr~~R~~a~~r~~e~~~iE~~-----------------l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 140 LGKEV-ELREERQRALARPLELNEIEKA-----------------LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HhchH-hHHHHHHHHHcCCcCHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 655 AKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQ 717 (899)
Q Consensus 655 akl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kq 717 (899)
-|.+-...+..++-++.=-=.-......+|.|+..+-+.--..=+-+.-|+.+|++..+...+
T Consensus 202 kk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~e~~ 264 (267)
T PF10234_consen 202 KKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRREQE 264 (267)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
No 358
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=77.54 E-value=1.3 Score=57.28 Aligned_cols=53 Identities=21% Similarity=0.540 Sum_probs=39.8
Q ss_pred ccccccccccccccc---cceEEecCCCcccChhhHHHhhhcCC---------CCCCCCcccccce
Q 002627 838 GVKRERECVMCLSEE---MSVVFLPCAHQVVCTTCNELHEKQGM---------KDCPSCRSPIQRR 891 (899)
Q Consensus 838 ~l~~~~~CvIC~d~~---~~vvllPCgH~~~C~~Ca~~l~~~~~---------~kCPiCR~~I~~~ 891 (899)
.++.+..|+||+.+. .-++-+.|+|. |-..|...+...+. -.||+|..+|..+
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 455677899999974 44667899999 88888877654332 2799999999754
No 359
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.46 E-value=1.3e+02 Score=33.99 Aligned_cols=76 Identities=24% Similarity=0.282 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 640 RLEVENTALRQEMEAAKLRAA------ESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA 713 (899)
Q Consensus 640 ~lE~ena~lr~emEaakl~a~------Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~ 713 (899)
++-..+..|+.+.+.++..-. |....+.++..+-+...++++.+-.|.+...++|...-.++..+.++.+.++.
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444457777776663222 22222233333333334444444444444444444444444444444444333
Q ss_pred HH
Q 002627 714 LQ 715 (899)
Q Consensus 714 ~~ 715 (899)
..
T Consensus 215 ~~ 216 (294)
T COG1340 215 EF 216 (294)
T ss_pred HH
Confidence 33
No 360
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=77.43 E-value=58 Score=29.79 Aligned_cols=35 Identities=14% Similarity=0.416 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 678 k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
..+..+..-+..|...|...+..+..++++++..+
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r 79 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555554444444444444433
No 361
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.40 E-value=1.3e+02 Score=33.81 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=8.6
Q ss_pred HHHhhhcHHHHHHHHHh
Q 002627 579 ARRLSKDKAELKTLRQE 595 (899)
Q Consensus 579 a~rl~~d~~eLk~LR~E 595 (899)
|.||..+-.||.+-|.|
T Consensus 287 terlrqeeeelnikk~e 303 (445)
T KOG2891|consen 287 TERLRQEEEELNIKKAE 303 (445)
T ss_pred HHHHhhhHhhhhhhHHH
Confidence 34555555555554444
No 362
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=77.35 E-value=72 Score=30.85 Aligned_cols=37 Identities=8% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
.+..+..-+..|.+.|...+..+..++.+++..+...
T Consensus 62 ~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l 98 (141)
T TIGR02473 62 ELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERL 98 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666555555555555555444333
No 363
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=77.35 E-value=84 Score=32.24 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (899)
Q Consensus 673 Ekk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELe 709 (899)
.......+...++-+...++.+...+.+|..++++..
T Consensus 52 ~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~ 88 (174)
T PRK07352 52 REAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAE 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443333
No 364
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.24 E-value=88 Score=31.77 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE 719 (899)
...+..+-+++..|..++...+.++..|+.-.......+...+
T Consensus 72 ~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 72 ELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444445555555555555555555555555554444443333
No 365
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.05 E-value=1.9e+02 Score=35.59 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-hH
Q 002627 684 EKQKALFQEELVTE--------KRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRK-EREQIEASAK-SK 753 (899)
Q Consensus 684 EkQk~~LQEEL~~e--------K~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~-ErEraE~~~k-~k 753 (899)
-+++..+|.+|..- =.++..|+++|++|...+.-+..+++....... ...+...+-. .+.-+|...+ .+
T Consensus 436 ~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~-R~~~~~~~d~~kIK~LE~e~R~S~ 514 (852)
T KOG4787|consen 436 TTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQV-RDGEIQYSDELKIKILELEKRLSE 514 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHH-hhhhhccchHHHHHHHHHHHHHHH
Confidence 34555555554433 346778889999998888777766655443111 1111111101 1122222222 23
Q ss_pred HHHHhhHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 002627 754 EDMIKSKAETNLMRYKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 754 eealr~K~E~E~qr~k~dikrLEqElsrLr~k~ 786 (899)
...+++..|.|.. ..-+.+++++..-|+...
T Consensus 515 ~Ls~~L~~ElE~~--~~~~~~~e~~~evL~~~~ 545 (852)
T KOG4787|consen 515 KLAIDLVSELEGK--IPTIDEIEQCCEVLAAVE 545 (852)
T ss_pred HHHHHHHHHHHhh--cCcHhHHHHHHHHHHHHh
Confidence 4444555554442 234556667666666544
No 366
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=77.04 E-value=1.5e+02 Score=34.37 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=33.4
Q ss_pred HHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHH----HHHHHHHHHHhHHH-----hhhhHHHHHHHHHHhhhhHH
Q 002627 564 LHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEE----VERLKKEKQILEEN-----TMKKLSEMENALCKASGQVE 632 (899)
Q Consensus 564 ~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe----~eRlkk~k~~lee~-----t~kkL~e~E~al~kas~Q~~ 632 (899)
++...++.++.+-++..-|...+. .+|++.++ .+.++.+-.+++-+ ...+|.+++.++..+..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~fl~~ql~---~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 232 (444)
T TIGR03017 158 IDTNIELKVEPAQKAALWFVQQIA---ALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVM 232 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777776666665544 44555444 34454454444321 12345555555554444443
No 367
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=76.90 E-value=17 Score=40.23 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=43.3
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 002627 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENA 623 (899)
Q Consensus 544 D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~a 623 (899)
++||++|-. +.+++++ ..+.+=|+.+.-|.+..|.+...++..+..... .+...+| .+.+.+.+.+.
T Consensus 151 ~ekd~~i~~---~~~~~e~--d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~-------~~~~~~e-~~~r~~~lr~~ 217 (264)
T PF07246_consen 151 EEKDQLIKE---KTQEREN--DRRNQILSHEISNLTNELSNLRNDIDKFQERED-------EKILHEE-LEARESGLRNE 217 (264)
T ss_pred HHHHHHHHH---Hhhchhh--hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhh-------HHHHHHH-HHHhHhhhHHH
Confidence 455555544 5555555 556666666666666666555554433322211 1222222 24444444444
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q 002627 624 LCKASGQVERANSAVRRLEVE 644 (899)
Q Consensus 624 l~kas~Q~~ra~~~vr~lE~e 644 (899)
.+.+.+++..|.....++...
T Consensus 218 ~~~l~~el~~aK~~~~~~~~~ 238 (264)
T PF07246_consen 218 SKWLEHELSDAKEDMIRLRND 238 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555555555543
No 368
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=76.62 E-value=0.81 Score=52.58 Aligned_cols=55 Identities=22% Similarity=0.550 Sum_probs=0.0
Q ss_pred ccccccccccc-------------------ccceEEecCCCcccChhhHHHhhhc--------CCCCCCCCcccccc---
Q 002627 841 RERECVMCLSE-------------------EMSVVFLPCAHQVVCTTCNELHEKQ--------GMKDCPSCRSPIQR--- 890 (899)
Q Consensus 841 ~~~~CvIC~d~-------------------~~~vvllPCgH~~~C~~Ca~~l~~~--------~~~kCPiCR~~I~~--- 890 (899)
...+|++|+.. +...+|.||||+| =...+.-|... -...||+|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 37889999852 3457899999993 23333333210 11489999999974
Q ss_pred eEeEEe
Q 002627 891 RIPVRY 896 (899)
Q Consensus 891 ~irVf~ 896 (899)
+++++|
T Consensus 406 ~vrLiF 411 (416)
T PF04710_consen 406 YVRLIF 411 (416)
T ss_dssp ------
T ss_pred ceEEEE
Confidence 666655
No 369
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.61 E-value=0.83 Score=50.72 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=33.4
Q ss_pred cccccccccccccccc---eEEecCCCcccChhhHHHhh----------------------hcCCCCCCCCccccc
Q 002627 839 VKRERECVMCLSEEMS---VVFLPCAHQVVCTTCNELHE----------------------KQGMKDCPSCRSPIQ 889 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~---vvllPCgH~~~C~~Ca~~l~----------------------~~~~~kCPiCR~~I~ 889 (899)
.-....|+||+-...+ .+.++|.|+ |-..|..++. .+-...||+||-+|.
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 3445789999886432 667899999 6667755431 011136999999886
No 370
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=76.53 E-value=57 Score=37.50 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~k 716 (899)
-.+||++..||++|+-++.+....+.+.+.+..+++
T Consensus 142 ~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 142 AHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999988888776666555554444443
No 371
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.38 E-value=71 Score=37.72 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHH
Q 002627 630 QVERANSAVRRLE 642 (899)
Q Consensus 630 Q~~ra~~~vr~lE 642 (899)
|...|..-|++++
T Consensus 236 Qnk~akehv~km~ 248 (575)
T KOG4403|consen 236 QNKKAKEHVNKMM 248 (575)
T ss_pred hhhHHHHHHHHHH
Confidence 4555555555555
No 372
>PF14992 TMCO5: TMCO5 family
Probab=76.20 E-value=1.4e+02 Score=33.60 Aligned_cols=11 Identities=45% Similarity=0.465 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 002627 637 AVRRLEVENTA 647 (899)
Q Consensus 637 ~vr~lE~ena~ 647 (899)
++++|++|.+.
T Consensus 33 ~iq~Le~Eit~ 43 (280)
T PF14992_consen 33 AIQSLEREITK 43 (280)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 373
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=76.15 E-value=2.4 Score=47.55 Aligned_cols=55 Identities=31% Similarity=0.577 Sum_probs=34.7
Q ss_pred cccccccccccc-------------------ccceEEecCCCcccChhhHHHhhhc---------CCCCCCCCccccc--
Q 002627 840 KRERECVMCLSE-------------------EMSVVFLPCAHQVVCTTCNELHEKQ---------GMKDCPSCRSPIQ-- 889 (899)
Q Consensus 840 ~~~~~CvIC~d~-------------------~~~vvllPCgH~~~C~~Ca~~l~~~---------~~~kCPiCR~~I~-- 889 (899)
....+|++|+.. +.+.+|-||||+ |.+=...++.+ -...||+|-+.+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 357889999863 234578999998 44433333221 1247999998876
Q ss_pred -ceEeEEe
Q 002627 890 -RRIPVRY 896 (899)
Q Consensus 890 -~~irVf~ 896 (899)
.++++.|
T Consensus 417 ~~~ikliF 424 (429)
T KOG3842|consen 417 QGYIKLIF 424 (429)
T ss_pred CceEEEEE
Confidence 3555543
No 374
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=76.09 E-value=1.4e+02 Score=33.37 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=23.9
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHH
Q 002627 544 DKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQA 578 (899)
Q Consensus 544 D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQa 578 (899)
|...+..-+|..++.+--.++....+++..+--|.
T Consensus 92 d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ 126 (297)
T PF02841_consen 92 DEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQA 126 (297)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777888877778888888876655544
No 375
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=1 Score=49.47 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=37.5
Q ss_pred ccccccccccccccc----------ceEEecCCCcccChhhHHHhhhcC-CCCCCCCccccc
Q 002627 839 VKRERECVMCLSEEM----------SVVFLPCAHQVVCTTCNELHEKQG-MKDCPSCRSPIQ 889 (899)
Q Consensus 839 l~~~~~CvIC~d~~~----------~vvllPCgH~~~C~~Ca~~l~~~~-~~kCPiCR~~I~ 889 (899)
-.++..|.||-...- ++.-+.|+|. |-..|+..|.--+ ..+||.|...|+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 346678999987532 3445789999 9999998876432 369999998876
No 376
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=75.70 E-value=95 Score=33.05 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRK 700 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~K 700 (899)
.+.+...++.+...++.+...+.+
T Consensus 85 ~~~L~~Ae~~~~eA~~~l~e~e~~ 108 (205)
T PRK06231 85 EAEINQANELKQQAQQLLENAKQR 108 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444333333333333333
No 377
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=75.15 E-value=23 Score=35.79 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 665 SCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQ 735 (899)
Q Consensus 665 ~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laq 735 (899)
.+..+.+..+..-..+....+++..|++|+..+..-+......+.+++..++.++..|++..+.....+..
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 34455566666666777888999999999999999999999999999999988888888877665444443
No 378
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=75.09 E-value=89 Score=34.25 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 671 KREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (899)
Q Consensus 671 ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeq 710 (899)
+|+++....+...++-+...++.+...+.++..++++.++
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 75 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666655555443
No 379
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.02 E-value=1.2e+02 Score=32.23 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 002627 555 PRVRELHNQLHE 566 (899)
Q Consensus 555 ~r~~el~~~~~~ 566 (899)
++|++|+|++.+
T Consensus 12 ~ki~~L~n~l~e 23 (194)
T PF15619_consen 12 HKIKELQNELAE 23 (194)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 380
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.92 E-value=22 Score=42.45 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 683 WEKQKALFQEELVTEKRKVVQLLQELD 709 (899)
Q Consensus 683 ~EkQk~~LQEEL~~eK~KLa~LeqELe 709 (899)
|..-.....+++......+..+.+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIR 155 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 381
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=74.67 E-value=81 Score=36.47 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
++-+|.+|...|+.+...++.++.+....++..+.+
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a 124 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQA 124 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666555555444433
No 382
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.55 E-value=2.7e+02 Score=36.05 Aligned_cols=94 Identities=17% Similarity=0.126 Sum_probs=51.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002627 613 TMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT-QMKFQSWEKQKALFQ 691 (899)
Q Consensus 613 t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~-~k~l~~~EkQk~~LQ 691 (899)
--++..++|..+.-...+.++-.+.+..+-+--+.+ .|--..||...|++.+..+....++.. .+..+..+.-+.+|.
T Consensus 507 ~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl-~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~ 585 (913)
T KOG0244|consen 507 YESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKL-GEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLL 585 (913)
T ss_pred HhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHh-hhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHH
Confidence 334555566655555555555555554444422222 233345677777776666555444444 455566666677777
Q ss_pred HHHHHHHHHHHHHHHH
Q 002627 692 EELVTEKRKVVQLLQE 707 (899)
Q Consensus 692 EEL~~eK~KLa~LeqE 707 (899)
+||...|....++.+.
T Consensus 586 ~ei~~~k~~kv~l~~~ 601 (913)
T KOG0244|consen 586 QEIHIAKGQKVQLLRV 601 (913)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766665555444443
No 383
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.51 E-value=49 Score=30.53 Aligned_cols=59 Identities=24% Similarity=0.179 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQA 736 (899)
Q Consensus 678 k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqa 736 (899)
.+++..-..+..||-||+..|.|-..+.++.+.++.....++.+..+.++....|..++
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777899999999999999999999888887777777766666665555554444
No 384
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.19 E-value=1.1e+02 Score=31.56 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhhhhhHHHH
Q 002627 697 EKRKVVQLLQELDQAKALQEQLEARWRQEE-KAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNLMRYKDDI 772 (899)
Q Consensus 697 eK~KLa~LeqELeqak~~~kqlE~kwrQeq-kakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~qr~k~di 772 (899)
++..+..+..+.++++..++.++.+.+++- +...+....+..++.+..........+...+..+...+...++.+|
T Consensus 71 ~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~i 147 (177)
T PF07798_consen 71 RKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEI 147 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666555532 2333344444444444333333333334444444444333333333
No 385
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=74.13 E-value=95 Score=30.68 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 685 kQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
.++..++-|+...|.++.++.++.+.+...+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 386
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=74.09 E-value=53 Score=37.27 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLEVENTALR 649 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr 649 (899)
.-++..|.++..+++.|...+.....+|..+.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d 204 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFD 204 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 33555566666666666666666666555543
No 387
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=74.05 E-value=91 Score=30.40 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 678 MKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEK 727 (899)
Q Consensus 678 k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqk 727 (899)
..+..+.-|..-+...+...+.+|..+.+.++.-|.+..+++.+.-..++
T Consensus 44 ~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 44 NALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666667777777777777777777655555555555444433
No 388
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.02 E-value=1.3e+02 Score=32.30 Aligned_cols=47 Identities=30% Similarity=0.397 Sum_probs=27.2
Q ss_pred hHHHhhhh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 609 LEENTMKK---LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 609 lee~t~kk---L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
|.+..+.| |...|+.|.+...+.+--.-.+..++.+++.+|.+...+
T Consensus 57 l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 57 LQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 34444444 444556666666665555566666676666666665554
No 389
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=73.93 E-value=2e+02 Score=34.37 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 696 TEKRKVVQLLQELDQAKALQEQLEARWRQEEKA 728 (899)
Q Consensus 696 ~eK~KLa~LeqELeqak~~~kqlE~kwrQeqka 728 (899)
..+..++.++-+.-.++..+..+|+..+.++.+
T Consensus 320 ~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~ 352 (554)
T KOG4677|consen 320 FSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESA 352 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333444444444444444444444444444333
No 390
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=73.92 E-value=1.1e+02 Score=31.42 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEE 693 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEE 693 (899)
...+...++.+...++.
T Consensus 59 ~~~l~~Ae~~~~ea~~~ 75 (167)
T PRK08475 59 SKRLEEIQEKLKESKEK 75 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444333333333
No 391
>PRK10869 recombination and repair protein; Provisional
Probab=73.82 E-value=2.2e+02 Score=34.74 Aligned_cols=220 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhHH------HhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHH
Q 002627 546 RDEIILKLIPRVRELHNQLHEWTEW------ANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSE 619 (899)
Q Consensus 546 Kde~il~Lv~r~~el~~~~~~~~dW------A~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e 619 (899)
+.+-.+.|+..+..-+..+++..++ +.++.-+...+-..-..++..|+-+.+|++++ -|.+..-.+|.+
T Consensus 138 ~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~-----~l~~gE~eeL~~ 212 (553)
T PRK10869 138 KPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF-----APQPGEFEQIDE 212 (553)
T ss_pred CHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC-----CCCCCcHHHHHH
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEV--------ENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQ 691 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~--------ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQ 691 (899)
--..|.++..=.+..+..+..|.. ....+...++.. .+-...+.++.+.-...+-.++..-.++...-
T Consensus 213 e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~~~----~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 288 (553)
T PRK10869 213 EYKRLANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLSEL----IGMDSKLSGVLDMLEEALIQIQEASDELRHYL 288 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH----hhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhhhhhHHH
Q 002627 692 EELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNLMRYKDD 771 (899)
Q Consensus 692 EEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~qr~k~d 771 (899)
+.|..--.++..++..|..++...+.+-....+.-.-.+++..+++....--+.++. .+.+.......
T Consensus 289 ~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~------------Le~e~~~l~~~ 356 (553)
T PRK10869 289 DRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLET------------LALAVEKHHQQ 356 (553)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHH------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcc
Q 002627 772 IHRLEKEISQLRLKT 786 (899)
Q Consensus 772 ikrLEqElsrLr~k~ 786 (899)
+..+-++|+..|.+.
T Consensus 357 l~~~A~~LS~~R~~a 371 (553)
T PRK10869 357 ALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHHH
No 392
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.78 E-value=50 Score=29.05 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKER 743 (899)
Q Consensus 690 LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~Er 743 (899)
||..|..+-+--..+..+|..++......+.++++..+...++..+++..+.+.
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455666666666666666666666655555555554443333
No 393
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=73.60 E-value=1.1e+02 Score=31.34 Aligned_cols=26 Identities=19% Similarity=0.003 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 676 TQMKFQSWEKQKALFQEELVTEKRKV 701 (899)
Q Consensus 676 ~~k~l~~~EkQk~~LQEEL~~eK~KL 701 (899)
....+...|+.+...++-++..+.+|
T Consensus 40 I~~~Ld~Ae~~r~eA~~l~~e~e~~L 65 (154)
T PRK06568 40 VQEKVLKAEKLKEDAALLFEQTNAQI 65 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333
No 394
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=2.5 Score=48.66 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=38.7
Q ss_pred ccccccccccc----cccceEEecCCCcccChhhHHHhhhcCC--CCCCCCccccc--ceEeEEe
Q 002627 840 KRERECVMCLS----EEMSVVFLPCAHQVVCTTCNELHEKQGM--KDCPSCRSPIQ--RRIPVRY 896 (899)
Q Consensus 840 ~~~~~CvIC~d----~~~~vvllPCgH~~~C~~Ca~~l~~~~~--~kCPiCR~~I~--~~irVf~ 896 (899)
-....|+|=.+ +.. .+-+.|||+ +|..-..++...+. -+||+|-.... ...+|||
T Consensus 332 HSvF~CPVlKeqtsdeNP-Pm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENP-PMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cceeecccchhhccCCCC-Ceeeeccce-ecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 35568998554 333 344589999 99999998877655 58999986543 5666664
No 395
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.46 E-value=60 Score=35.37 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 675 KTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQE 725 (899)
Q Consensus 675 k~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQe 725 (899)
...+++..+|.+...+|+.|+...-+.++|+..+..+-.....++.+|.+.
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 335666666666666666666666666666666655555555555666543
No 396
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=73.40 E-value=1.6e+02 Score=32.86 Aligned_cols=146 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q 002627 596 KEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEV-----------ENTALRQEMEAAKLRAAESAA 664 (899)
Q Consensus 596 kEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~-----------ena~lr~emEaakl~a~Es~~ 664 (899)
+.+.+..+.+-+..++-.-++++.|+..|..+.+.+..++..++-|-. .++.|..+.+.+|-+-+.-..
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEld 141 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELD 141 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 665 SCQEVSKREKKT-QMKFQSWEKQKAL---------FQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVM 734 (899)
Q Consensus 665 ~~~e~~ekEkk~-~k~l~~~EkQk~~---------LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~la 734 (899)
.+.+..+.+... ..+.+.-.+++-. .+.-+-.--..-..+.+++..-+..+++++..+.+.+...+++..
T Consensus 142 el~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 142 ELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 002627 735 QASSIRK 741 (899)
Q Consensus 735 qaE~ER~ 741 (899)
++..-|.
T Consensus 222 ~~~~~Re 228 (258)
T PF15397_consen 222 QAQDPRE 228 (258)
T ss_pred hhcchHH
No 397
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=73.40 E-value=1.2e+02 Score=31.32 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (899)
Q Consensus 672 kEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqEL 708 (899)
|.......+...++.+...++.++..+.++.+++++.
T Consensus 50 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea 86 (173)
T PRK13453 50 RERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEV 86 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445444444444444444444444333
No 398
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.30 E-value=57 Score=29.45 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 630 QVERANSAVRRLEVENTALRQEME 653 (899)
Q Consensus 630 Q~~ra~~~vr~lE~ena~lr~emE 653 (899)
.+.+|=.+|..|.+++++++.+..
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556655555555433
No 399
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=73.28 E-value=43 Score=33.61 Aligned_cols=39 Identities=33% Similarity=0.371 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE 719 (899)
..+|+|+..|+++++..+.+++++.+|++-++...+.+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999988877765553
No 400
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=73.26 E-value=1.7 Score=41.89 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 680 l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
|..+..+...|+.++...+.++..+..++.+++.....+...+...++..++....++.
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~ 85 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEE 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 33445555555555555566666666666655555555555555555555555554444
No 401
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=73.06 E-value=1.1e+02 Score=32.50 Aligned_cols=7 Identities=29% Similarity=0.785 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 002627 822 LISEVMK 828 (899)
Q Consensus 822 ~iqelL~ 828 (899)
.|.+.+.
T Consensus 192 lI~~~i~ 198 (205)
T PRK06231 192 LVDEFIR 198 (205)
T ss_pred HHHHHHH
Confidence 3444443
No 402
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=72.79 E-value=1.7e+02 Score=34.47 Aligned_cols=83 Identities=18% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 002627 638 VRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKA-LQE 716 (899)
Q Consensus 638 vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~-~~k 716 (899)
++++......|...+|..|-....-..-+.+.+..||--+.+ +|.|+- +-++-++.++.+|.++|+.... -..
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~er---LEeqlN---d~~elHq~Ei~~LKqeLa~~EEK~~Y 294 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYER---LEEQLN---DLTELHQNEIYNLKQELASMEEKMAY 294 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444444444455555444443333444444445444444 555543 2335566666677777665442 223
Q ss_pred HHHHHHHHHH
Q 002627 717 QLEARWRQEE 726 (899)
Q Consensus 717 qlE~kwrQeq 726 (899)
+..++.|+..
T Consensus 295 qs~eRaRdi~ 304 (395)
T PF10267_consen 295 QSYERARDIW 304 (395)
T ss_pred HHHHHHhHHH
Confidence 4444444433
No 403
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=72.77 E-value=2.2 Score=42.62 Aligned_cols=51 Identities=25% Similarity=0.595 Sum_probs=39.2
Q ss_pred cccccccccccccceEEe-c---CCCcccChhhHHHhhhc--CCCCCCCCcccccceE
Q 002627 841 RERECVMCLSEEMSVVFL-P---CAHQVVCTTCNELHEKQ--GMKDCPSCRSPIQRRI 892 (899)
Q Consensus 841 ~~~~CvIC~d~~~~vvll-P---CgH~~~C~~Ca~~l~~~--~~~kCPiCR~~I~~~i 892 (899)
..-+|-||.+...+--|+ | ||-. +|.-|...+++. ....||.|.+.|.+.-
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 456799999988776665 4 7755 999998887753 3569999999987643
No 404
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=72.75 E-value=1.2e+02 Score=31.22 Aligned_cols=91 Identities=14% Similarity=0.232 Sum_probs=64.2
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 002627 546 RDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC 625 (899)
Q Consensus 546 Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~ 625 (899)
-++|-..-+.-++.-+.++...+-=-.+||-.--.|+..+.-.|-.+|.|.| .|.+.+||.+...-..|.
T Consensus 25 ~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE----------~l~dP~RkEv~~vRkkID 94 (159)
T PF04949_consen 25 DEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELE----------VLADPMRKEVEMVRKKID 94 (159)
T ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------hhccchHHHHHHHHHHHH
Confidence 3455555555555555555555555566666655666555555556666555 478899999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHH
Q 002627 626 KASGQVERANSAVRRLEVENT 646 (899)
Q Consensus 626 kas~Q~~ra~~~vr~lE~ena 646 (899)
....||..+-...++-|.|--
T Consensus 95 ~vNreLkpl~~~cqKKEkEyk 115 (159)
T PF04949_consen 95 SVNRELKPLGQSCQKKEKEYK 115 (159)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999998886553
No 405
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=72.62 E-value=2.9 Score=35.83 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=29.1
Q ss_pred cccccccccccccccceEEe-cCCCcccChhhHHHhh-hcCCCCCCC
Q 002627 839 VKRERECVMCLSEEMSVVFL-PCAHQVVCTTCNELHE-KQGMKDCPS 883 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~vvll-PCgH~~~C~~Ca~~l~-~~~~~kCPi 883 (899)
......|+|.+....+.|.- .|||. |....+..+. ..+...||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 44567899999998887774 89998 9999999887 334568998
No 406
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=72.57 E-value=1.8e+02 Score=34.09 Aligned_cols=109 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002627 616 KLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT-QMKFQSWEKQKALFQEEL 694 (899)
Q Consensus 616 kL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~-~k~l~~~EkQk~~LQEEL 694 (899)
|..|+-+.|+- -|-+.-+||+.|+.+...+.....-+...+..+.+.-... .+.-...-+|-+...||=
T Consensus 282 Kveelar~Lr~----------~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK 351 (442)
T PF06637_consen 282 KVEELARSLRA----------GIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK 351 (442)
T ss_pred HHHHHHHHHhh----------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 695 VTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVM 734 (899)
Q Consensus 695 ~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~la 734 (899)
.+.+.+-..|.++|++-+++.+++.....-.-.+.+.-+.
T Consensus 352 aaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCik 391 (442)
T PF06637_consen 352 AALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIK 391 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
No 407
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=72.35 E-value=59 Score=39.99 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002627 686 QKALFQEELVTEKRKVVQLL 705 (899)
Q Consensus 686 Qk~~LQEEL~~eK~KLa~Le 705 (899)
|..+|-++.+++.+||..|+
T Consensus 126 QvsvLteqVeaQgEKIrDLE 145 (861)
T KOG1899|consen 126 QVSVLTEQVEAQGEKIRDLE 145 (861)
T ss_pred hHHHHHHHHHHhhhhHHHHH
Confidence 44444444444444444444
No 408
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=72.30 E-value=19 Score=39.57 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~e 651 (899)
|.+++.+|..+..+++++...+.+||...+.+-..
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677888888888888888999998777666654
No 409
>PLN02939 transferase, transferring glycosyl groups
Probab=71.22 E-value=3.3e+02 Score=35.69 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 639 RRLEVENTALRQEMEAAKLRAAES 662 (899)
Q Consensus 639 r~lE~ena~lr~emEaakl~a~Es 662 (899)
--|..||..++..+++.|..-.+-
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 229 DVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345567888888888887665443
No 410
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=71.14 E-value=1.3e+02 Score=30.90 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 676 TQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (899)
Q Consensus 676 ~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqE 707 (899)
....+...|+-+...++.+...+.++.+.+++
T Consensus 54 I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~e 85 (175)
T PRK14472 54 IQSSIDRAHSAKDEAEAILRKNRELLAKADAE 85 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 411
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.01 E-value=2.1e+02 Score=33.27 Aligned_cols=12 Identities=33% Similarity=0.482 Sum_probs=5.8
Q ss_pred HHhHHHHHHHHH
Q 002627 593 RQEKEEVERLKK 604 (899)
Q Consensus 593 R~EkEe~eRlkk 604 (899)
|.-.|++..+++
T Consensus 219 R~hleqm~~~~~ 230 (359)
T PF10498_consen 219 RSHLEQMKQHKK 230 (359)
T ss_pred HHHHHHHHHHHH
Confidence 455555444433
No 412
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=70.72 E-value=1.8e+02 Score=35.42 Aligned_cols=31 Identities=10% Similarity=0.311 Sum_probs=18.8
Q ss_pred HHhhHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 002627 756 MIKSKAETNLMRYKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 756 alr~K~E~E~qr~k~dikrLEqElsrLr~k~ 786 (899)
.++...++...-|...|.-+.+.|..|..+.
T Consensus 473 ~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL 503 (518)
T PF10212_consen 473 RLQDELETTRRNYEEQLSMMSEHLASMNEQL 503 (518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444555667777777777777666544
No 413
>PRK10698 phage shock protein PspA; Provisional
Probab=70.68 E-value=1.6e+02 Score=31.78 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 690 FQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQAS 737 (899)
Q Consensus 690 LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE 737 (899)
.++.+...+..+.......++++..+..++.++.+.+.....++++..
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555666666655555555555443
No 414
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=70.48 E-value=1.9e+02 Score=32.56 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002627 690 FQEELVTEKRKVVQLLQELDQA 711 (899)
Q Consensus 690 LQEEL~~eK~KLa~LeqELeqa 711 (899)
-++++...+..+...+.+++++
T Consensus 150 S~~~~~~a~~~~~~a~~~l~~a 171 (346)
T PRK10476 150 SAQQVDQARTAQRDAEVSLNQA 171 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333
No 415
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=70.46 E-value=1.3e+02 Score=32.56 Aligned_cols=40 Identities=23% Similarity=0.148 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 671 KREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQ 710 (899)
Q Consensus 671 ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeq 710 (899)
+|.++....+...|+-+...++.+...+.++..++++..+
T Consensus 36 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 75 (246)
T TIGR03321 36 AREKKIAGELADADTKKREAEQERREYEEKNEELDQQREV 75 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666655555443
No 416
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=70.29 E-value=1.7e+02 Score=32.00 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhHHHhhhh
Q 002627 597 EEVERLKKEKQILEENTMKK 616 (899)
Q Consensus 597 Ee~eRlkk~k~~lee~t~kk 616 (899)
+-.+.+|+.++..+.++..|
T Consensus 8 ~~~~~~k~n~~~~n~q~~sk 27 (230)
T PF03904_consen 8 NSMEEEKNNKETNNTQTNSK 27 (230)
T ss_pred hhhHHHhccccccchhhhhh
Confidence 33444555555555554444
No 417
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=70.25 E-value=1.3e+02 Score=30.76 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 683 WEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 683 ~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
+++-.......|........+..+.+++++..+
T Consensus 47 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L 79 (175)
T PRK14472 47 LEEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 418
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=70.20 E-value=86 Score=35.00 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 683 WEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 683 ~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
+-++-..-+.++...+.++...+.+++.++
T Consensus 136 L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~ 165 (331)
T PRK03598 136 LWKSRTISANDLENARSSRDQAQATLKSAQ 165 (331)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333
No 419
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=70.16 E-value=1.6e+02 Score=31.57 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 662 SAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEK-----RKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQA 736 (899)
Q Consensus 662 s~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK-----~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqa 736 (899)
-..++..+...-.+.....+.+++++.+.++.+...+ .|+.++..++.++.....+...+|.........-+.+.
T Consensus 107 ~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF 186 (224)
T cd07623 107 LIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777778887777776654442 35666777777777666666666666555444444444
Q ss_pred H
Q 002627 737 S 737 (899)
Q Consensus 737 E 737 (899)
+
T Consensus 187 ~ 187 (224)
T cd07623 187 E 187 (224)
T ss_pred H
Confidence 3
No 420
>PLN03188 kinesin-12 family protein; Provisional
Probab=70.08 E-value=3.9e+02 Score=35.98 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLE 642 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE 642 (899)
.|+.+||..|.-=-+|.--.|-.|+
T Consensus 1096 eel~~a~q~am~ghar~~e~ya~l~ 1120 (1320)
T PLN03188 1096 EELKEAMQMAMEGHARMLEQYADLE 1120 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888877655555444444443
No 421
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.02 E-value=3.1 Score=48.13 Aligned_cols=46 Identities=26% Similarity=0.581 Sum_probs=35.7
Q ss_pred ccccccccccc-----ccceEEecCCCcccChhhHHHhhhc-CCCCCCCCccc
Q 002627 841 RERECVMCLSE-----EMSVVFLPCAHQVVCTTCNELHEKQ-GMKDCPSCRSP 887 (899)
Q Consensus 841 ~~~~CvIC~d~-----~~~vvllPCgH~~~C~~Ca~~l~~~-~~~kCPiCR~~ 887 (899)
....|+||++. .-.++.+-|||. |=..|+..|..+ ....||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence 35789999995 345778889999 999999988632 23589999754
No 422
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=70.00 E-value=1.2e+02 Score=29.92 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 668 EVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (899)
Q Consensus 668 e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELe 709 (899)
.+-+|-.-..+.+...|+++.-.|++++..|.++.++++.-+
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555667777889999999999888888888877654
No 423
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=69.96 E-value=1.4e+02 Score=30.70 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 684 EKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 684 EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
++.....+..|........+..+.+++++..+
T Consensus 49 ~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L 80 (174)
T PRK07352 49 EERREAILQALKEAEERLRQAAQALAEAQQKL 80 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444344444444333333
No 424
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.79 E-value=72 Score=36.36 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 672 kEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
|-...+.+|..-+.++..++.+|...+-+|.+..++.+++-..+
T Consensus 2 rl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 2 RLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888899999999988888888777776666554443
No 425
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=69.78 E-value=1.4e+02 Score=30.82 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 712 KALQEQLEARWRQEEKAKEELVMQASSIRKERE 744 (899)
Q Consensus 712 k~~~kqlE~kwrQeqkakeE~laqaE~ER~ErE 744 (899)
...+.+++..|+++.+.....+.+++.+.+.++
T Consensus 77 e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 77 EEELLELEDQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777776666666666655544433
No 426
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.47 E-value=25 Score=31.41 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002627 572 NQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQE 651 (899)
Q Consensus 572 ~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~e 651 (899)
+.+.=+++|+++.--.+++.||.|++. +...|.-|--+.++-...+-.|..++...+++
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~---------------------~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDS---------------------AERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 427
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=69.45 E-value=1.9e+02 Score=33.45 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHH
Q 002627 599 VERLKKEKQILEENTMKKLSEMENALCKASGQVER 633 (899)
Q Consensus 599 ~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~r 633 (899)
+++|...-.+|+. .+|..++..|..+..++++
T Consensus 248 l~~L~~~lslL~~---~~Ld~i~~rl~~L~~~~~~ 279 (388)
T PF04912_consen 248 LNELERQLSLLDP---AKLDSIERRLKSLLSELEE 279 (388)
T ss_pred HHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHH
Confidence 5666666666643 2356666655555555543
No 428
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=69.28 E-value=2e+02 Score=32.30 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.7
Q ss_pred HHHHHHhHHH
Q 002627 548 EIILKLIPRV 557 (899)
Q Consensus 548 e~il~Lv~r~ 557 (899)
|+|+.+|.-+
T Consensus 129 e~Lc~IIqeL 138 (269)
T PF05278_consen 129 ECLCDIIQEL 138 (269)
T ss_pred HHHHHHHHHH
Confidence 5666666543
No 429
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=69.28 E-value=1.4e+02 Score=32.85 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002627 707 ELDQAKALQEQLEARWR 723 (899)
Q Consensus 707 ELeqak~~~kqlE~kwr 723 (899)
.+++++...+++..+++
T Consensus 91 il~~A~~ea~~~~~~a~ 107 (250)
T PRK14474 91 LLNEAREDVATARDEWL 107 (250)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555544444444
No 430
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.99 E-value=2.1e+02 Score=32.51 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=19.3
Q ss_pred HhhHHHhHHHHHHHHHhhhcHHHHHHHHHhH
Q 002627 566 EWTEWANQKVMQAARRLSKDKAELKTLRQEK 596 (899)
Q Consensus 566 ~~~dWA~qkvmQaa~rl~~d~~eLk~LR~Ek 596 (899)
.-.+|.++.+-++-.+|..-...|...|.+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4456777777777666666555555555543
No 431
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.89 E-value=1.2e+02 Score=32.24 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELD 709 (899)
Q Consensus 669 ~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELe 709 (899)
+..+.+..++....++-|+.-.|..|...++.|..|+++.+
T Consensus 145 va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 145 VAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555566666677777777666666666666665544
No 432
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=68.88 E-value=2e+02 Score=33.04 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=7.3
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 002627 620 MENALCKASGQVERANSA 637 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~ 637 (899)
++-+..+...........
T Consensus 8 ~q~a~~~lk~~~~~~qk~ 25 (332)
T TIGR01541 8 QQIADRKLKKLNTADEKS 25 (332)
T ss_pred HHHHHHHHhhhhHHHHHH
Confidence 333444444444433333
No 433
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.36 E-value=1.5e+02 Score=35.17 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQE 707 (899)
Q Consensus 669 ~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqE 707 (899)
+.+.|+++...++..|++-..+-.+|.+++.+-.++.++
T Consensus 188 l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~ 226 (447)
T KOG2751|consen 188 LKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEE 226 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555444444333
No 434
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=68.15 E-value=1.5e+02 Score=30.49 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 713 ALQEQLEARWRQEEKAKEELVMQASS 738 (899)
Q Consensus 713 ~~~kqlE~kwrQeqkakeE~laqaE~ 738 (899)
....+.+...++..+.-.+.+.++..
T Consensus 56 ~l~~e~e~~L~~Ar~EA~~Ii~~A~~ 81 (154)
T PRK06568 56 LLFEQTNAQIKKLETLRSQMIEESNE 81 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433
No 435
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.09 E-value=1.9 Score=52.01 Aligned_cols=38 Identities=32% Similarity=0.722 Sum_probs=29.7
Q ss_pred ccccccccccc----ccceEEecCCCcccChhhHHHhhhcCCCCCC
Q 002627 841 RERECVMCLSE----EMSVVFLPCAHQVVCTTCNELHEKQGMKDCP 882 (899)
Q Consensus 841 ~~~~CvIC~d~----~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCP 882 (899)
.-..|.||+.. ....|++-|||. +|..|+..+.. ..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhh---ccCC
Confidence 34569999765 445677789999 99999998864 6888
No 436
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=68.01 E-value=2e+02 Score=33.02 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 670 SKREKKTQMKFQSWEKQKALFQEE 693 (899)
Q Consensus 670 ~ekEkk~~k~l~~~EkQk~~LQEE 693 (899)
..+.-..+.++.-+|+|+..-++.
T Consensus 93 ~~~q~aEqErlkQle~er~~a~e~ 116 (387)
T COG3064 93 KPKQAAEQERLKQLEKERLKAQEQ 116 (387)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH
Confidence 333344455666666665544433
No 437
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=67.97 E-value=1.6e+02 Score=30.60 Aligned_cols=6 Identities=0% Similarity=0.318 Sum_probs=2.3
Q ss_pred HHHHHH
Q 002627 775 LEKEIS 780 (899)
Q Consensus 775 LEqEls 780 (899)
+.+++.
T Consensus 140 l~~ei~ 145 (184)
T CHL00019 140 VRQQVF 145 (184)
T ss_pred HHHHHH
Confidence 334433
No 438
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=67.84 E-value=1.6e+02 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 677 QMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (899)
Q Consensus 677 ~k~l~~~EkQk~~LQEEL~~eK~KLa~Le 705 (899)
...+...|+.+...++.+...+.++.+.+
T Consensus 64 ~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~ 92 (184)
T PRK13455 64 RSELEEARALREEAQTLLASYERKQREVQ 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 439
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=67.24 E-value=1e+02 Score=28.18 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 680 FQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 680 l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
+..++..+..++.++...+.++...++.+.++....
T Consensus 54 ~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 54 ISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 440
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=67.20 E-value=2.2e+02 Score=32.06 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhh
Q 002627 573 QKVMQAARRLSK 584 (899)
Q Consensus 573 qkvmQaa~rl~~ 584 (899)
.|.-+|++-|.+
T Consensus 35 ERaAkAlrel~~ 46 (276)
T PF12037_consen 35 ERAAKALRELNS 46 (276)
T ss_pred HHHHHHHHHHhc
Confidence 355666666553
No 441
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=67.14 E-value=2.8e+02 Score=33.27 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.0
Q ss_pred HHhhHHHHhhhhhHHHHH
Q 002627 756 MIKSKAETNLMRYKDDIH 773 (899)
Q Consensus 756 alr~K~E~E~qr~k~dik 773 (899)
+++.+++.+.+++...|.
T Consensus 244 ~l~~~~n~eRekwl~aIn 261 (630)
T KOG0742|consen 244 QLRLKANEEREKWLEAIN 261 (630)
T ss_pred HHHHHhhhHHHHHHHHHh
Confidence 344555555555544444
No 442
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=67.01 E-value=2.6e+02 Score=32.89 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=11.7
Q ss_pred hcHHHHHHHHHhHHHHHHH
Q 002627 584 KDKAELKTLRQEKEEVERL 602 (899)
Q Consensus 584 ~d~~eLk~LR~EkEe~eRl 602 (899)
.-...|..||...+++|+-
T Consensus 199 ~l~~~l~~lr~~~~~ae~~ 217 (458)
T COG3206 199 SLDERLEELRARLQEAEAQ 217 (458)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445666777776665554
No 443
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.84 E-value=27 Score=37.14 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQ 703 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~ 703 (899)
-|...|.|+..|+.-|..-+.+|.+
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~~ 192 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQQ 192 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444333
No 444
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=66.76 E-value=1.6e+02 Score=30.16 Aligned_cols=7 Identities=0% Similarity=0.026 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 002627 774 RLEKEIS 780 (899)
Q Consensus 774 rLEqEls 780 (899)
.+.+++.
T Consensus 125 el~~e~~ 131 (167)
T PRK14475 125 DVKAAAV 131 (167)
T ss_pred HHHHHHH
Confidence 3334443
No 445
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=66.62 E-value=2e+02 Score=31.39 Aligned_cols=170 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVT 696 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~ 696 (899)
+.++-+.|+.....+......+..+|.+...|..+++..+.++..-.+....+...-.....+.+.++..+..++..|..
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHH
Q 002627 697 EKRKVVQLLQ------------ELDQAKALQEQLEA-RWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAET 763 (899)
Q Consensus 697 eK~KLa~Leq------------ELeqak~~~kqlE~-kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~ 763 (899)
.-.++..+-. .++++..-++.+.. ........-+..+..|+..-......-..-....+.+......
T Consensus 106 l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~ 185 (264)
T PF06008_consen 106 LIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRD 185 (264)
T ss_pred HHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcc
Q 002627 764 NLMRYKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 764 E~qr~k~dikrLEqElsrLr~k~ 786 (899)
.+..|...+..|+.-+.+.....
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~~~~ 208 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQNKT 208 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 446
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.57 E-value=2.3e+02 Score=33.61 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESA 663 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~ 663 (899)
..-.|+-+++-.+-++.+.-..-.|..+..+--+|||--|--|.=++
T Consensus 19 ~~a~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE 65 (542)
T KOG0993|consen 19 YLAKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSE 65 (542)
T ss_pred ccchhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566666666666777777778888888888888887776554443
No 447
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=66.40 E-value=3.5 Score=46.49 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=39.4
Q ss_pred cccccccccccccccc-eEEecCCCcccChhhHHHhhhcCCCCCCCCcccc--cceEeEEe
Q 002627 839 VKRERECVMCLSEEMS-VVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPI--QRRIPVRY 896 (899)
Q Consensus 839 l~~~~~CvIC~d~~~~-vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I--~~~irVf~ 896 (899)
..+...|+||.....+ +|+.--|- |||..|+-.+.. ....||+-..|+ ...+++|.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGy-VfCY~Ci~~Yv~-~~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGY-VFCYPCIFSYVV-NYGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CCccccChhHHhccCCCceEEecce-EEeHHHHHHHHH-hcCCCCccCCcchHHHHHHHhc
Confidence 4567789999986554 44444564 499999998876 468999966554 45666553
No 448
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=66.18 E-value=2e+02 Score=31.15 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=74.5
Q ss_pred HHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 002627 561 HNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCKASGQVERANSAVRR 640 (899)
Q Consensus 561 ~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~ 640 (899)
-.++....|=.+.++.+|+++|-. .+= -.+||+||+.- .++|..|..+...+..|...|
T Consensus 4 ~~~~~~~~d~lq~~i~~as~~lNd-~TG-------Ys~Ie~LK~~i-----------~~~E~~l~~~r~~~~~aK~~Y-- 62 (207)
T PF05546_consen 4 SKKLSFYMDSLQETIFTASQALND-VTG-------YSEIEKLKKSI-----------EELEDELEAARQEVREAKAAY-- 62 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccC-------hHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH--
Confidence 344555556666677777776642 211 23344443322 225554544444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 641 LEVENTALRQEMEAAKLRAAESAASCQEVSKREK----KTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQE 716 (899)
Q Consensus 641 lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEk----k~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~k 716 (899)
+.|--.-+.+++.+-+++.|.. ..+.++..+=+.--.++.+....|.++..++...+++...+.
T Consensus 63 ------------~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L~ 130 (207)
T PF05546_consen 63 ------------DDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDLM 130 (207)
T ss_pred ------------HHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344556666677777633 356777777777666666677777777777776666655554
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002627 717 QLEARWRQEEKAKEELV 733 (899)
Q Consensus 717 qlE~kwrQeqkakeE~l 733 (899)
+..-.--.+++..-+.+
T Consensus 131 ~~Il~RYHEEQiWSDKI 147 (207)
T PF05546_consen 131 RAILTRYHEEQIWSDKI 147 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44433333344444333
No 449
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=66.09 E-value=2.6e+02 Score=33.92 Aligned_cols=141 Identities=21% Similarity=0.186 Sum_probs=90.0
Q ss_pred HHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHH---------------H-----HHHHHHHHHH---
Q 002627 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKE---------------E-----VERLKKEKQI--- 608 (899)
Q Consensus 552 ~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkE---------------e-----~eRlkk~k~~--- 608 (899)
+|+.-++----|+ --.-+..++|-.++--.+++.|=|.|++|.. + ++|||-|--+
T Consensus 513 nLl~h~k~R~~qv--pg~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~drEV~~~A~~~~~~~eRLkmElst~kD 590 (790)
T PF07794_consen 513 NLLRHIKGRNCQV--PGVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQDREVSFQAEGIVPGIERLKMELSTSKD 590 (790)
T ss_pred HHHHHHhcccccC--CchhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCccceeecccccccchhhhhheeeccccc
Confidence 4555444322233 3344555677777778899999999998742 2 7788754333
Q ss_pred hHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 609 LEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKA 688 (899)
Q Consensus 609 lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~ 688 (899)
||-.-..|+-=||-++.-....+.-+.+.|..||....++-.+.--.-..++-+.+.+.+....--..+.+|...-|+|=
T Consensus 591 lekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKw 670 (790)
T PF07794_consen 591 LEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKW 670 (790)
T ss_pred hhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333445444555556666666667788889987776666665556666666666777776666666778887777766
Q ss_pred HHHHHH
Q 002627 689 LFQEEL 694 (899)
Q Consensus 689 ~LQEEL 694 (899)
...+|-
T Consensus 671 v~KKe~ 676 (790)
T PF07794_consen 671 VAKKEY 676 (790)
T ss_pred hhhhhH
Confidence 555443
No 450
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.95 E-value=97 Score=28.15 Aligned_cols=55 Identities=27% Similarity=0.206 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELV 733 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~l 733 (899)
+++..-.-++.||-||+..|.|-..+.++...+....+.++.+-.|.++.-..|.
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455578888888888888888888877777666666665555554444443
No 451
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=65.69 E-value=1.7e+02 Score=30.19 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 667 QEVSKREKKTQMKFQSWEKQKALFQEELVTE----KRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE 742 (899)
Q Consensus 667 ~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~e----K~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E 742 (899)
+++.++-...+-+++.-.|+++.++++|+.. +.++.-+++-++.++..++-+-.-.+.-++...+++..+.+..++
T Consensus 48 meVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 48 MEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667777777777777776532 334444444444444444444444555555556666666554444
Q ss_pred HHHH
Q 002627 743 REQI 746 (899)
Q Consensus 743 rEra 746 (899)
+..+
T Consensus 128 K~~L 131 (159)
T PF04949_consen 128 KAQL 131 (159)
T ss_pred HHHH
Confidence 4443
No 452
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=65.65 E-value=1.9e+02 Score=30.85 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 671 KREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQ 715 (899)
Q Consensus 671 ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~ 715 (899)
+|.+-..-....+-+++...++.|.....|...+-++..++|..+
T Consensus 94 EWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElc 138 (195)
T PF10226_consen 94 EWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELC 138 (195)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455555445555555555555555555555555555555544444
No 453
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=65.52 E-value=1.1e+02 Score=39.93 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=63.6
Q ss_pred HHHhHHHHHHHHHHHHh--hHHHhHH-----HHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHh--------------
Q 002627 551 LKLIPRVRELHNQLHEW--TEWANQK-----VMQAARRLSKDKAELKTLRQEKEEVERLKKEKQIL-------------- 609 (899)
Q Consensus 551 l~Lv~r~~el~~~~~~~--~dWA~qk-----vmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~l-------------- 609 (899)
++-|+|+-|=..=|+-- -.||=.| +.||-+.+.+|+.--++=+.-||++++.|-+-..|
T Consensus 1017 MDaIKqmIekKv~L~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eK 1096 (1439)
T PF12252_consen 1017 MDAIKQMIEKKVVLQALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVVTPVVTDAEK 1096 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 34445544433333322 2455554 56666777777765554445566666666553333
Q ss_pred --------HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002627 610 --------EENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEM 652 (899)
Q Consensus 610 --------ee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~em 652 (899)
=.++-||+.++|++-.--..++.++-+..-.|.-|...||.|.
T Consensus 1097 vr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRnEK 1147 (1439)
T PF12252_consen 1097 VRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRNEK 1147 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2335667888888877777888888888888888888888764
No 454
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=65.49 E-value=2.5e+02 Score=32.10 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=45.1
Q ss_pred HHHhHHHhhhhHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-----
Q 002627 606 KQILEENTMKKLSEMENALCKASGQVER-ANSAVRRLEVENTALRQEMEAAKLRAAESAA----SCQEVSKREKK----- 675 (899)
Q Consensus 606 k~~lee~t~kkL~e~E~al~kas~Q~~r-a~~~vr~lE~ena~lr~emEaakl~a~Es~~----~~~e~~ekEkk----- 675 (899)
-..|-..-++||..+-..-..+-+++++ ....|.+|.+....++.++.+ +-...+.-+ -....++.|..
T Consensus 104 EE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~-~q~~le~Lr~EKVdlEn~LE~EQE~lvN~ 182 (310)
T PF09755_consen 104 EEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA-KQEELERLRREKVDLENTLEQEQEALVNR 182 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444556665555544455555554 334566666666666555422 111111110 12334444443
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002627 676 TQMKFQSWEKQKALFQEELV 695 (899)
Q Consensus 676 ~~k~l~~~EkQk~~LQEEL~ 695 (899)
..|++..++.++..||+.|.
T Consensus 183 L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 183 LWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34667777777777777765
No 455
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.45 E-value=85 Score=33.06 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 682 SWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 682 ~~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
..+.+...|++++...+.++..++.+++.++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666553
No 456
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.40 E-value=3.4e+02 Score=34.21 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002627 618 SEMENALCKASGQVERANSAVRRLEVEN 645 (899)
Q Consensus 618 ~e~E~al~kas~Q~~ra~~~vr~lE~en 645 (899)
.-++++|..+..+++.++..+.....+|
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3355555555555555555555555544
No 457
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=65.37 E-value=1.8e+02 Score=30.48 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=28.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHH
Q 002627 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAEL 589 (899)
Q Consensus 547 de~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eL 589 (899)
|+-..+.-..+..|+.+|+. -.=+.+++...-+.|+.+..+|
T Consensus 23 D~~F~~~~~~~~~le~~Lk~-l~~~~~~l~~~~~~l~~~~~e~ 64 (236)
T PF09325_consen 23 DEWFEEIKDYVDKLEEQLKK-LYKSLERLVKRRQELASALAEF 64 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777778888888876 3445566666666666665544
No 458
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.15 E-value=3.8e+02 Score=34.10 Aligned_cols=63 Identities=19% Similarity=0.082 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 672 REKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVM 734 (899)
Q Consensus 672 kEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~la 734 (899)
........++..--++..++|+|.....-+.-+.+.++.+....+.++.+.+++-.++.+.+.
T Consensus 664 fa~ID~~Sa~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~ 726 (1104)
T COG4913 664 FASIDLPSAQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKK 726 (1104)
T ss_pred hhhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555555556666666666666666666655555555544443
No 459
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=65.06 E-value=1.5e+02 Score=35.26 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 671 KREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (899)
Q Consensus 671 ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~Leq 706 (899)
+|+.+..+.+...|+-+..+++..+..+.++.+.++
T Consensus 32 ~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ 67 (445)
T PRK13428 32 ARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKA 67 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444444444444444333
No 460
>PF13166 AAA_13: AAA domain
Probab=65.05 E-value=3.4e+02 Score=33.52 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhHHHhHH
Q 002627 558 RELHNQLHEWTEWANQK 574 (899)
Q Consensus 558 ~el~~~~~~~~dWA~qk 574 (899)
.+++.+|..-.++....
T Consensus 283 ~~~~~~l~~~~~~~~~~ 299 (712)
T PF13166_consen 283 EKLIEELEKAIKKLEKA 299 (712)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555544444443
No 461
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.93 E-value=22 Score=40.46 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 681 QSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLE 719 (899)
Q Consensus 681 ~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE 719 (899)
....+++..|++++...+.++.+..+-+.-+......|.
T Consensus 259 ~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 259 EEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 334556666666666666666666665555554443333
No 462
>PLN02939 transferase, transferring glycosyl groups
Probab=64.88 E-value=4.4e+02 Score=34.67 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHHHHHHHhh
Q 002627 765 LMRYKDDIHRLEKEISQLRL 784 (899)
Q Consensus 765 ~qr~k~dikrLEqElsrLr~ 784 (899)
.+-|..+++..++-+..|+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~ 397 (977)
T PLN02939 378 IQLYQESIKEFQDTLSKLKE 397 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35566666666666665554
No 463
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=64.83 E-value=2.8e+02 Score=33.54 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhh-hhhHHHHHHHHHHHH
Q 002627 721 RWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNL-MRYKDDIHRLEKEIS 780 (899)
Q Consensus 721 kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~-qr~k~dikrLEqEls 780 (899)
+++-.+++.+-...-++.|+..+.++.... .++..+|-..|..+ ..|+..+.-|.+-++
T Consensus 141 q~~~LekAl~~~~~i~~~E~~~l~~L~~AL-~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe 200 (508)
T PF00901_consen 141 QIEILEKALKSYGKIVKEENKQLDRLARAL-QKESRERTQDERKMVEEYRQKIDALKNAIE 200 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666554433 35566677777776 777777777777665
No 464
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.82 E-value=60 Score=28.94 Aligned_cols=50 Identities=28% Similarity=0.451 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 628 SGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLL 705 (899)
Q Consensus 628 s~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~Le 705 (899)
..+||+-=..+.+|..||+.+|+ +...|..+...|.+.++..+.++.-+-
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~----------------------------q~~~~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRA----------------------------QEKTWREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555677888888888877 444566676666666666666644443
No 465
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=64.81 E-value=56 Score=33.92 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 637 AVRRLEVENTALRQEMEAAKLRAAESAASCQ 667 (899)
Q Consensus 637 ~vr~lE~ena~lr~emEaakl~a~Es~~~~~ 667 (899)
++..+-.+...++++.++++.++........
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~ 149 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAE 149 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4445555666677777777777666544333
No 466
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=64.74 E-value=1.5e+02 Score=29.28 Aligned_cols=34 Identities=12% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
.+..+..=+..|.+.|...+..+..++.++++.+
T Consensus 65 ~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r 98 (147)
T PRK05689 65 WWINYQQFLQQLEKAITQQRQQLTQWTQKVDNAR 98 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555554433
No 467
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=64.66 E-value=49 Score=40.69 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 676 TQMKFQSWEKQKALFQEELVTE-------KRKVVQLLQELDQAKALQEQLEARWRQEEKAKEE 731 (899)
Q Consensus 676 ~~k~l~~~EkQk~~LQEEL~~e-------K~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE 731 (899)
.-+++..+|.++..++++|... ..++..+.+++++++..++.+..+|.+.....++
T Consensus 568 ~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 568 LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677776676666432 2267788888888888888888888887654433
No 468
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=64.34 E-value=4.8 Score=44.51 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=27.0
Q ss_pred ccccccccccccccceEEecC-----CCcccChhhHHHhhhcCCCCCCCCcccccceEeEE
Q 002627 840 KRERECVMCLSEEMSVVFLPC-----AHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVR 895 (899)
Q Consensus 840 ~~~~~CvIC~d~~~~vvllPC-----gH~~~C~~Ca~~l~~~~~~kCPiCR~~I~~~irVf 895 (899)
.+...|+||-..+.-.++..= +|+ +|.-|...|...+ .+||.|...-...+..|
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R-~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVR-IKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--T-TS-TTT---SS-EEE--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecC-CCCcCCCCCCCcceeeE
Confidence 445799999999887777654 344 7999999987765 59999997765544443
No 469
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.27 E-value=3e+02 Score=32.63 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=34.3
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhh------HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002627 581 RLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKK------LSEMENALCKASGQVERANSAVRRLEV 643 (899)
Q Consensus 581 rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kk------L~e~E~al~kas~Q~~ra~~~vr~lE~ 643 (899)
.|-+|+.++-.=|.|+|+.++-. -||.|.-+ ...-|.-+..+.+.+-+|...|++.+.
T Consensus 303 qlqrdlE~~~~~r~ele~~~~qs-----~ed~t~q~~~ll~~~q~sE~ll~tlq~~iSqaq~~vq~qma 366 (542)
T KOG0993|consen 303 QLQRDLEELIETRAELEHTEQQS-----QEDITVQRAQLLEERQHSEDLLVTLQAEISQAQSEVQKQMA 366 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777766777777755443 33333222 334455666677777777777776663
No 470
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=64.27 E-value=56 Score=32.56 Aligned_cols=69 Identities=25% Similarity=0.380 Sum_probs=45.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHH-hh-----------hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 586 KAELKTLRQEKEEVERLKKEKQILEEN-TM-----------KKLSEMENALCKASGQVERANSAVRRLEVENTALRQEME 653 (899)
Q Consensus 586 ~~eLk~LR~EkEe~eRlkk~k~~lee~-t~-----------kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emE 653 (899)
+++++..|.+.|-++.-+.+-.+++|. .+ -++..+...|.....+ ....+-.||.+...|.++|+
T Consensus 36 k~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~---l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 36 KADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKET---LEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999987 11 1133333333333222 22366677777777778887
Q ss_pred HHHH
Q 002627 654 AAKL 657 (899)
Q Consensus 654 aakl 657 (899)
+.|.
T Consensus 113 ~LK~ 116 (131)
T KOG1760|consen 113 ELKK 116 (131)
T ss_pred HHHH
Confidence 7764
No 471
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=64.18 E-value=1.8e+02 Score=30.05 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 683 WEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 683 ~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
+++-....+..|........+.++.+++++
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e 85 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYE 85 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333
No 472
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=64.15 E-value=4.6e+02 Score=34.70 Aligned_cols=120 Identities=21% Similarity=0.149 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSA-VRRLEVENTALRQEMEAAKLRAAESAA-SCQEVSKREKKTQMKFQSWEKQKALFQEEL 694 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~-vr~lE~ena~lr~emEaakl~a~Es~~-~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL 694 (899)
-.+| .-|.++++||.+-|.. |..|=.-..-.=.+||+.....++.+. .|.+++.+..+.+-.-...+||+. +|
T Consensus 1233 PLDl-SDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~----di 1307 (1439)
T PF12252_consen 1233 PLDL-SDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEKEIQQNLQLLDKLEKTLDDSDTAQKQKE----DI 1307 (1439)
T ss_pred ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHH----HH
Confidence 4556 5678888999888754 444444455556789988888887654 578888888888777777777754 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 695 VTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRK 741 (899)
Q Consensus 695 ~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ 741 (899)
...+.-+..-++.--..-+.+-..|+-+-|....|+.-...+.+.+.
T Consensus 1308 ~kl~~~lv~kQKAYP~M~QlQ~ksealI~qLRelC~~h~~~l~k~~~ 1354 (1439)
T PF12252_consen 1308 VKLNDFLVEKQKAYPAMVQLQFKSEALIIQLRELCEAHQDNLAKTRK 1354 (1439)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444433333222233333333444455555555544444444333
No 473
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=63.99 E-value=2e+02 Score=31.21 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=4.6
Q ss_pred chhHHHHHHh
Q 002627 819 QTPLISEVMK 828 (899)
Q Consensus 819 Q~~~iqelL~ 828 (899)
+...|...+.
T Consensus 191 ~~~~i~~~l~ 200 (246)
T TIGR03321 191 QREQIRDTIR 200 (246)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 474
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.91 E-value=1.1e+02 Score=33.09 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002627 729 KEELVMQASSIRKEREQI 746 (899)
Q Consensus 729 keE~laqaE~ER~ErEra 746 (899)
..+...|++....|-.++
T Consensus 181 ~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHcccHHHHH
Confidence 344444444444444443
No 475
>PRK11519 tyrosine kinase; Provisional
Probab=63.76 E-value=1.9e+02 Score=36.30 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002627 617 LSEMENALCKASGQVERANSAVRRLEVENTAL 648 (899)
Q Consensus 617 L~e~E~al~kas~Q~~ra~~~vr~lE~ena~l 648 (899)
+.=++++|..+..+++.++..+.....+|..+
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v 300 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV 300 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44466777777777777777777776666554
No 476
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=63.71 E-value=5 Score=40.20 Aligned_cols=33 Identities=21% Similarity=0.595 Sum_probs=26.8
Q ss_pred ccccccccccc---cceEEecCCCc-----ccChhhHHHhh
Q 002627 842 ERECVMCLSEE---MSVVFLPCAHQ-----VVCTTCNELHE 874 (899)
Q Consensus 842 ~~~CvIC~d~~---~~vvllPCgH~-----~~C~~Ca~~l~ 874 (899)
..+|.||+++- ..+|.++||-. .||..|..+|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 67899999963 46888899854 28999999984
No 477
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=63.56 E-value=2.4e+02 Score=31.25 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=33.0
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 582 LSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALC-KASGQVERANSAVRRLEVENTALRQEMEAA 655 (899)
Q Consensus 582 l~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~-kas~Q~~ra~~~vr~lE~ena~lr~emEaa 655 (899)
+.+...+|++...|.++ ++ .+....+..+...++. ....++.+.+..+..+..+++.+..+..++
T Consensus 96 vIs~pl~l~iF~~eI~~--~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 161 (301)
T PF14362_consen 96 VISEPLELKIFEKEIDQ--KL-------DEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRA 161 (301)
T ss_pred HHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999988775 22 2222222222222222 234455555555555555555554444433
No 478
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=63.50 E-value=71 Score=38.03 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 703 QLLQELDQAKALQEQLEARWRQEEKAKEELVMQA 736 (899)
Q Consensus 703 ~LeqELeqak~~~kqlE~kwrQeqkakeE~laqa 736 (899)
.++++|++-+..-..++.+.+.+++.+..+..++
T Consensus 546 slekql~~ErklR~~~qkr~kkEkk~k~k~qe~L 579 (641)
T KOG3915|consen 546 SLEKQLAMERKLRAIVQKRLKKEKKAKRKLQEAL 579 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444433333344444444444444333333
No 479
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.25 E-value=67 Score=36.02 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcc
Q 002627 766 MRYKDDIHRLEKEISQLRLKT 786 (899)
Q Consensus 766 qr~k~dikrLEqElsrLr~k~ 786 (899)
+..+.+|+.|.+-|+.+|...
T Consensus 120 KEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 120 KEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 445556777777777776654
No 480
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=63.13 E-value=3.2 Score=40.16 Aligned_cols=45 Identities=29% Similarity=0.643 Sum_probs=27.2
Q ss_pred cccccccccccc-----cceEEecCCCcccChhhHHHhhhcCCCCCCCCcc
Q 002627 841 RERECVMCLSEE-----MSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRS 886 (899)
Q Consensus 841 ~~~~CvIC~d~~-----~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~ 886 (899)
+...|.+|.... ...+..-|.|. +|..|.........-.|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHH
Confidence 346899998752 34566678888 7888876532222335777764
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.12 E-value=2e+02 Score=35.30 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 664 ASCQEVSKREKKT-QMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE 742 (899)
Q Consensus 664 ~~~~e~~ekEkk~-~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E 742 (899)
.++.+-..+-+.. +-...-+-.++..-.++|..+++|+..+++....+..+.+.+-.+-.-..+.+..++..+..+..-
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Q ss_pred HHHHHHHHhhHHHHHhhHHHHhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHhccCCCCCCccccccccccccCCchhH
Q 002627 743 REQIEASAKSKEDMIKSKAETNLMRYKDDIHRLEKEISQLRLKTDSSKIAALRRGIDGSYAGRLTDIKSSSVHKESQTPL 822 (899)
Q Consensus 743 rEraE~~~k~keealr~K~E~E~qr~k~dikrLEqElsrLr~k~d~~RrAaL~~g~d~sy~~~~~~q~~~~~~k~~Q~~~ 822 (899)
.-+||...+ .|++..-+.++.|..-|+.++.+.+..|...-....+.-...=..+.. |...
T Consensus 653 l~~AErdFk-----------~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~--------Q~~~ 713 (741)
T KOG4460|consen 653 LSDAERDFK-----------KELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAY--------QRKC 713 (741)
T ss_pred chhHHHHHH-----------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHH--------HHHH
Q ss_pred HHHHHhhc
Q 002627 823 ISEVMKDY 830 (899)
Q Consensus 823 iqelL~~i 830 (899)
|+++|.++
T Consensus 714 iqsiL~~L 721 (741)
T KOG4460|consen 714 IQSILKEL 721 (741)
T ss_pred HHHHHHHH
No 482
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=63.01 E-value=4.4e+02 Score=34.01 Aligned_cols=11 Identities=18% Similarity=-0.037 Sum_probs=6.3
Q ss_pred hhhHHHHHHHh
Q 002627 203 LPQLEKYILAE 213 (899)
Q Consensus 203 L~~l~~rSL~G 213 (899)
|++=+-+|...
T Consensus 247 LWQEAyrSiED 257 (988)
T KOG2072|consen 247 LWQEAYRSIED 257 (988)
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 483
>PF15456 Uds1: Up-regulated During Septation
Probab=62.95 E-value=1.1e+02 Score=30.43 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHH---hhhhHHHHHHHHHHhhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 597 EEVERLKKEKQILEEN---TMKKLSEMENALCKASGQVERA-----------NSAVRRLEVENTALRQEMEAAKLRAAES 662 (899)
Q Consensus 597 Ee~eRlkk~k~~lee~---t~kkL~e~E~al~kas~Q~~ra-----------~~~vr~lE~ena~lr~emEaakl~a~Es 662 (899)
||++.|||+-+.|+.. .+++|. +|..++.|-.-+-+. ...+.+.|.+.+....
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~r------------ 88 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDR------------ 88 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHh------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 663 AASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQ 703 (899)
Q Consensus 663 ~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~ 703 (899)
++..|..++..++..+..-+++|-+
T Consensus 89 ----------------k~ee~~~eL~~le~R~~~~~~rLLe 113 (124)
T PF15456_consen 89 ----------------KCEELAQELWKLENRLAEVRQRLLE 113 (124)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=62.57 E-value=2.9e+02 Score=33.72 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 002627 547 DEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMENALCK 626 (899)
Q Consensus 547 de~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~al~k 626 (899)
...|-+|..++.+++.+++..-+=-...++.............+.|..|..++-....+..+ ..+|.+...++..
T Consensus 13 ~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i-----~~~l~~a~~e~~~ 87 (593)
T PF06248_consen 13 RKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEI-----QPQLRDAAEELQE 87 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 627 ASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQ 706 (899)
Q Consensus 627 as~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~Leq 706 (899)
+..|++..+..+.-++ .++.........++.+.. .++...-+
T Consensus 88 L~~eL~~~~~~l~~L~------------------------------------~L~~i~~~l~~~~~al~~--~~~~~Aa~ 129 (593)
T PF06248_consen 88 LKRELEENEQLLEVLE------------------------------------QLQEIDELLEEVEEALKE--GNYLDAAD 129 (593)
T ss_pred HHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHhc--CCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 707 ELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQ 745 (899)
Q Consensus 707 ELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEr 745 (899)
.|++++..++.+....-..-.....+..++...+..+..
T Consensus 130 ~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~ 168 (593)
T PF06248_consen 130 LLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQY 168 (593)
T ss_pred HHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHH
No 485
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.55 E-value=1.2e+02 Score=28.72 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhh--hh------HHHHHHH
Q 002627 552 KLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTM--KK------LSEMENA 623 (899)
Q Consensus 552 ~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~--kk------L~e~E~a 623 (899)
.++.+++.|+.+ .+++++.-+.|..++.|.+..-.|.+. |++.+. +. ....+.+
T Consensus 3 ~~~~~~q~l~~~--------~~~l~~~~~~l~~~~~E~~~v~~EL~~----------l~~d~~vy~~VG~vfv~~~~~ea 64 (105)
T cd00632 3 EQLAQLQQLQQQ--------LQAYIVQRQKVEAQLNENKKALEELEK----------LADDAEVYKLVGNVLVKQEKEEA 64 (105)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCcchHHHHhhhHHhhccHHHH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 624 LCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAE 661 (899)
Q Consensus 624 l~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~E 661 (899)
+.....+++.....+.+++.....+..+|...+..-.|
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=62.51 E-value=1.3e+02 Score=27.87 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhh
Q 002627 686 QKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNL 765 (899)
Q Consensus 686 Qk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~ 765 (899)
++..|+..|...+.++..+...+..+......++................+ +..++...+.-+..+....+...
T Consensus 1 ~k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l------~~~L~~~e~~ll~~l~~~~~~~~ 74 (127)
T smart00502 1 QREALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDEL------RNALNKRKKQLLEDLEEQKENKL 74 (127)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHhhccchhHHHH
Q 002627 766 MRYKDDIHRLEKEISQLRLKTDSSKIAA 793 (899)
Q Consensus 766 qr~k~dikrLEqElsrLr~k~d~~RrAa 793 (899)
..+...+..++..+.++....+....++
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=62.15 E-value=2.3e+02 Score=30.44 Aligned_cols=166 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHhhHHHhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 002627 543 QDKRDEIILKLIPRVRELHNQLHEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKKLSEMEN 622 (899)
Q Consensus 543 ~D~Kde~il~Lv~r~~el~~~~~~~~dWA~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kkL~e~E~ 622 (899)
++++++++-.--.++.+|+ ..++|-...++.=..+|+.|+.=+.-=+..-.+-+.|++...+--.++..
T Consensus 35 ~~~r~~l~s~y~~q~~~Lq-----------~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~ 103 (206)
T PF14988_consen 35 QRERQELVSRYAKQTSELQ-----------DQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAE 103 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHHHHHH-HHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 623 ALCKASGQVERANSAV-RRL-EVENTALRQEMEAA---KLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTE 697 (899)
Q Consensus 623 al~kas~Q~~ra~~~v-r~l-E~ena~lr~emEaa---kl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~e 697 (899)
.+..+..|.=.-.... +.+ |.....+-.+.... |..|.|. ++..-+.+--+......+.+-+++..|-++....
T Consensus 104 ~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~-~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L 182 (206)
T PF14988_consen 104 KLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALEL-AAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKL 182 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002627 698 KRKVVQLLQELDQAKALQEQLEA 720 (899)
Q Consensus 698 K~KLa~LeqELeqak~~~kqlE~ 720 (899)
......|+++..++.+...-.+.
T Consensus 183 ~~~~~~Le~qk~~L~~eq~~~e~ 205 (206)
T PF14988_consen 183 EARKSQLEKQKQQLQQEQWYLES 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
No 488
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=61.93 E-value=2e+02 Score=29.62 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHhHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 002627 607 QILEENTMKKLSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKT--QMKFQSWE 684 (899)
Q Consensus 607 ~~lee~t~kkL~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~--~k~l~~~E 684 (899)
+.|.|-..|+..+...+|++....++.+.--++-|+ .+...-++.+.++-... ..+....+
T Consensus 8 ~~l~dl~~k~~e~a~~el~k~~~~~~~~~~qL~~l~-----------------~y~~ey~q~~~~k~~~G~s~~q~~nyq 70 (148)
T COG2882 8 QKLLDLAKKEEEEAAIELSKIRSEKENAEEQLKMLS-----------------GYRNEYEQNLNEKLKSGVSAAQWQNYQ 70 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhccccHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 685 KQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEAS 749 (899)
Q Consensus 685 kQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~ 749 (899)
..+..|+..|...+..++.+...+++.....-....+.+--+...+........+...+++...+
T Consensus 71 ~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~~~k~~e~L~er~~~e~~~~e~~~Eqk~mD 135 (148)
T COG2882 71 QFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIELKALEKLKERQKTEFLLEENRREQKIMD 135 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
No 489
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=61.84 E-value=1.5e+02 Score=28.36 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHH
Q 002627 679 KFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE---REQIEASAKSKED 755 (899)
Q Consensus 679 ~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E---rEraE~~~k~kee 755 (899)
++..--++....+..|..-+.++.++...+.+-...+...+..+++.....+..+..-+..+.. +...+...+....
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~ 80 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE 80 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHhhhhhHHHHHHHHHHHHHHh
Q 002627 756 MIKSKAETNLMRYKDDIHRLEKEISQLR 783 (899)
Q Consensus 756 alr~K~E~E~qr~k~dikrLEqElsrLr 783 (899)
....+...++..++.++.+++..+..+.
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=61.81 E-value=2.2e+02 Score=30.16 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHH----------HHHHhHHHhhhh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 590 KTLRQEKEEVERLKK----------EKQILEENTMKK---LSEMENALCKASGQVERANSAVRRLEVENTALRQEMEAAK 656 (899)
Q Consensus 590 k~LR~EkEe~eRlkk----------~k~~lee~t~kk---L~e~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaak 656 (899)
|+-|.|.|..+-..+ -|.+|...+..+ -.+....-.-..+||..|+++...||.+..-+|.=++-|.
T Consensus 12 KIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae 91 (178)
T PF14073_consen 12 KIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAE 91 (178)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 657 LRAAESAASCQEVSKRE--------KKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKA 728 (899)
Q Consensus 657 l~a~Es~~~~~e~~ekE--------kk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqka 728 (899)
..-..-... +-.++++ +..+.+|..+|++-.+|.-.=.....||..|++.|.+-...-+.+..+-.|.+..
T Consensus 92 ~er~~~le~-q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~ 170 (178)
T PF14073_consen 92 KERNAVLEQ-QVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTG 170 (178)
T ss_pred HhhhHHHHH-HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HH
Q 002627 729 KE 730 (899)
Q Consensus 729 ke 730 (899)
.+
T Consensus 171 lE 172 (178)
T PF14073_consen 171 LE 172 (178)
T ss_pred HH
No 491
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=61.66 E-value=51 Score=31.91 Aligned_cols=55 Identities=25% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 673 EKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEK 727 (899)
Q Consensus 673 Ekk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqk 727 (899)
.+....++..+|.|+..+.++|...|..+..+.+|.+.++-...++..++.+..+
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.48 E-value=2.7e+02 Score=31.09 Aligned_cols=215 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHhHHHhhhh---HHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Q 002627 571 ANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQILEENTMKK---LSEMENALCKASGQVERANSA-VRRLEVENT 646 (899)
Q Consensus 571 A~qkvmQaa~rl~~d~~eLk~LR~EkEe~eRlkk~k~~lee~t~kk---L~e~E~al~kas~Q~~ra~~~-vr~lE~ena 646 (899)
+..+.||-.+....+++ +.+..|.++-+-.|++|..+ |..-...+..+..=++..+.. +..+..+..
T Consensus 3 ~rr~sl~el~~h~~~L~---------~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLq 73 (258)
T PF15397_consen 3 NRRTSLQELKKHEDFLT---------KLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQ 73 (258)
T ss_pred cHHHHHHHHHHHHHHHH---------HhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 002627 647 ALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQE-ELVTEKRKVVQLL----QELDQAKALQEQLEAR 721 (899)
Q Consensus 647 ~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQE-EL~~eK~KLa~Le----qELeqak~~~kqlE~k 721 (899)
+....++.---.-..+...+-....+-++...-|...-.----... .|....+.|.++. .|++++..-.......
T Consensus 74 e~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~ 153 (258)
T PF15397_consen 74 EWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELAS 153 (258)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHhh-----hhhHHHHHHHHHHHHHHhhccchhHHHHH
Q 002627 722 WRQEEKAKEELVMQASSIRKEREQIEASAKSKEDMIKSKAETNL-----MRYKDDIHRLEKEISQLRLKTDSSKIAAL 794 (899)
Q Consensus 722 wrQeqkakeE~laqaE~ER~ErEraE~~~k~keealr~K~E~E~-----qr~k~dikrLEqElsrLr~k~d~~RrAaL 794 (899)
.....+...+.+-..-.++-..---....+.-......+.|.+. ..++++|..|..|+..|+......|-.+|
T Consensus 154 l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF 231 (258)
T PF15397_consen 154 LSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhh
No 493
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=61.21 E-value=1.9e+02 Score=29.26 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhhHHHHhh
Q 002627 687 KALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKE-REQIEASAKSKEDMIKSKAETNL 765 (899)
Q Consensus 687 k~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~E-rEraE~~~k~keealr~K~E~E~ 765 (899)
...+.+.=..-...+...++..+++...+.+++.++.+..+...+.+.++..+..+ ++.+-...+.+.+.+....+.+.
T Consensus 34 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I 113 (164)
T PRK14473 34 LNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQA 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -hhhHHHHHHHHHHHHHH
Q 002627 766 -MRYKDDIHRLEKEISQL 782 (899)
Q Consensus 766 -qr~k~dikrLEqElsrL 782 (899)
+....-+..|..++..+
T Consensus 114 ~~ek~~a~~~L~~~i~~l 131 (164)
T PRK14473 114 EQERQRMLSELKSQIADL 131 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
No 494
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=61.10 E-value=1.8e+02 Score=34.55 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEA 748 (899)
Q Consensus 669 ~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~ 748 (899)
+.+|+.+..+.+...|+-+..+++..+..+.++.+.+++-++ -++.-.++.++..++.+.+++. +.+++..
T Consensus 30 l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~------Ii~~A~~~A~~~~~~~~~~A~~---ea~~i~~ 100 (445)
T PRK13428 30 MAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAAR------VVEEAREDAERIAEQLRAQADA---EAERIKV 100 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHHH
Q 002627 749 SAKSKEDMIKSKAETNLMRYKDDI 772 (899)
Q Consensus 749 ~~k~keealr~K~E~E~qr~k~di 772 (899)
..+...+..+.++..+++....++
T Consensus 101 ~a~~~Ie~ek~~a~~elr~ei~~l 124 (445)
T PRK13428 101 QGARQVQLLRAQLTRQLRLELGHE 124 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.96 E-value=92 Score=27.92 Aligned_cols=67 Identities=13% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 620 MENALCKASGQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQ 686 (899)
Q Consensus 620 ~E~al~kas~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQ 686 (899)
||-.+..+...+|++...+-..+.++..|+.|.+.+-.+....-..+.++..+-....+.+.....|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 496
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=60.82 E-value=2e+02 Score=29.38 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 669 VSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQIEA 748 (899)
Q Consensus 669 ~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~ 748 (899)
+-+|.......+...|+-+...++.+...+.+|.+.+.+..+ -+..-..+.++..++.+.+++. +.+++..
T Consensus 39 le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~------Ii~~A~~~a~~~~~~~~~~A~~---ea~~~~~ 109 (167)
T PRK14475 39 LDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAA------MLAAAKADARRMEAEAKEKLEE---QIKRRAE 109 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HHhhHHHHHhhHHHHhhhhhHHHH
Q 002627 749 SAKSKEDMIKSKAETNLMRYKDDI 772 (899)
Q Consensus 749 ~~k~keealr~K~E~E~qr~k~di 772 (899)
..+.+.+..+.++-.+++....++
T Consensus 110 ~A~~~I~~e~~~a~~el~~e~~~l 133 (167)
T PRK14475 110 MAERKIAQAEAQAAADVKAAAVDL 133 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=60.76 E-value=1.7e+02 Score=35.90 Aligned_cols=106 Identities=25% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 629 GQVERANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQEL 708 (899)
Q Consensus 629 ~Q~~ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqEL 708 (899)
.|.-+..+..++.+++-..++++. +....|.-..+.|..++|+. .+...-.++++.++.++.+|+.+.
T Consensus 595 sqdRks~srekr~~~sfdk~kE~R---r~Re~eer~RirE~rerEqR---------~~a~~ERee~eRl~~erlrle~qR 662 (940)
T KOG4661|consen 595 SQDRKSRSREKRRERSFDKRKEER---RRREAEERQRIREEREREQR---------RKAAVEREELERLKAERLRLERQR 662 (940)
T ss_pred hhhhHHHHHHhhhhhhHHhhhhHH---HhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 709 DQAKALQEQLEARWRQEEKAKEELVMQASSIRKEREQI 746 (899)
Q Consensus 709 eqak~~~kqlE~kwrQeqkakeE~laqaE~ER~ErEra 746 (899)
+.+.+..-+.|.--++.++...+....-+...++|+.+
T Consensus 663 QrLERErmErERLEreRM~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 663 QRLERERMERERLERERMKVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhHHHH
No 498
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=60.62 E-value=2.5e+02 Score=30.37 Aligned_cols=141 Identities=22% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHhhhcHHHHHHHHHhHHHHH-----HHHHHHHHh------------------HHHhhhhHHHHHHHHHHhhhhHH
Q 002627 576 MQAARRLSKDKAELKTLRQEKEEVE-----RLKKEKQIL------------------EENTMKKLSEMENALCKASGQVE 632 (899)
Q Consensus 576 mQaa~rl~~d~~eLk~LR~EkEe~e-----Rlkk~k~~l------------------ee~t~kkL~e~E~al~kas~Q~~ 632 (899)
|+-..+|-.-++-|..-.+-||+.| ||-.+-..| ....+.+|.|-|+.|..+.+.+-
T Consensus 2 vekv~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~ 81 (205)
T PF12240_consen 2 VEKVERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMT 81 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 633 RANSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAK 712 (899)
Q Consensus 633 ra~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak 712 (899)
+=+..| || |-+.=-.-|+||--.+.++.+++......+.....- +..++|-..+.|+.+++-.+..+.
T Consensus 82 kWEqkY--LE-Es~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~---------r~~eel~~a~~K~qemE~RIK~Lh 149 (205)
T PF12240_consen 82 KWEQKY--LE-ESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL---------REEEELHMANRKCQEMENRIKALH 149 (205)
T ss_pred HHHHHH--HH-HHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc---------cchHHHHHhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 002627 713 ALQEQLEARWRQEEKA 728 (899)
Q Consensus 713 ~~~kqlE~kwrQeqka 728 (899)
..+.+-++-++..++.
T Consensus 150 aqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 150 AQIAEKDAMIKVLQQR 165 (205)
T ss_pred HHHHHHHHHHHHHHhh
No 499
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.59 E-value=2.6e+02 Score=30.68 Aligned_cols=108 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002627 635 NSAVRRLEVENTALRQEMEAAKLRAAESAASCQEVSKREKKTQMKFQSWEKQKALFQEELVTEKRKVVQLLQELDQAKAL 714 (899)
Q Consensus 635 ~~~vr~lE~ena~lr~emEaakl~a~Es~~~~~e~~ekEkk~~k~l~~~EkQk~~LQEEL~~eK~KLa~LeqELeqak~~ 714 (899)
|+.++.++ ..+....|.|.++-...|.+....++.+--.+.--+....|.++--+|++|+.....+.-+..++.+.++.
T Consensus 44 nS~~efar-~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~kei 122 (246)
T KOG4657|consen 44 NSLVEFAR-ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEI 122 (246)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002627 715 QEQLEARWRQEEKAKEELVMQASSIRKEREQIEASAKSKE 754 (899)
Q Consensus 715 ~kqlE~kwrQeqkakeE~laqaE~ER~ErEraE~~~k~ke 754 (899)
+ ..+.+++..+.++..+|.+-++...++.
T Consensus 123 I-----------s~kr~~~~Ka~e~~~kRkQdsa~~~e~a 151 (246)
T KOG4657|consen 123 I-----------SQKRQALSKAKENAGKRKQDSADIHEAA 151 (246)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHhhhhccHHHH
No 500
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=60.57 E-value=6.9 Score=36.08 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=0.0
Q ss_pred ccccccc-----cccceEEecCCCcccChhhHHHhhhcCCCCCCCCccccc
Q 002627 844 ECVMCLS-----EEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQ 889 (899)
Q Consensus 844 ~CvIC~d-----~~~~vvllPCgH~~~C~~Ca~~l~~~~~~kCPiCR~~I~ 889 (899)
.|+-|.. .+-.++.--|.|. |=.-|+.++..++ ..||+||+++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHa-FH~HCI~rWL~Tk-~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHA-FHDHCIYRWLDTK-GVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchH-HHHHHHHHHHhhC-CCCCCCCceeE
Done!