Query 002627
Match_columns 899
No_of_seqs 298 out of 1300
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 15:46:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002627.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1347-1350//hhsearch_pdb/002627hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6p_A Baculoviral IAP repeat- 1.0 1 1 96.1 2.4 54 839-897 292-345 (345)
2 2yho_A E3 ubiquitin-protein li 1.0 1 1 92.2 3.1 55 839-898 15-69 (79)
3 2ea5_A Cell growth regulator w 1.0 1 1 92.0 4.8 56 839-899 12-67 (68)
4 2vje_A E3 ubiquitin-protein li 1.0 1 1 90.8 4.4 57 840-897 6-64 (64)
5 2vje_B MDM4 protein; proto-onc 1.0 1 1 90.4 4.4 58 839-897 4-63 (63)
6 4ic3_A E3 ubiquitin-protein li 1.0 1 1 87.5 2.2 54 839-897 21-74 (74)
7 2ecg_A Baculoviral IAP repeat- 1.0 1 1 87.1 0.6 54 839-897 22-75 (75)
8 2y1n_A E3 ubiquitin-protein li 1.0 1 1 87.0 4.1 56 841-897 331-386 (389)
9 4ayc_A E3 ubiquitin-protein li 1.0 1 1 80.6 10.7 51 841-893 52-102 (138)
10 1z6u_A NP95-like ring finger p 1.0 1 1 75.9 2.9 52 839-891 75-126 (150)
No 1
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=1.00 E-value=1 Score=96.05 Aligned_cols=54 Identities=39% Similarity=0.932 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 65322112112346521881689710472328986212999987786455663768735
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYA 897 (899)
Q Consensus 839 ~~~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a 897 (899)
+.....|+||++...+.+++||||.+||..|+..+ ..||+||.+|..++++|++
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEEEECC--
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCC-----CCCCCCCCCCCCEEEEECC
T ss_conf 76799997229708853770899856769987328-----7698988880580886159
No 2
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=1.00 E-value=1 Score=92.21 Aligned_cols=55 Identities=33% Similarity=0.789 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 653221121123465218816897104723289862129999877864556637687359
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYAR 898 (899)
Q Consensus 839 ~~~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a~ 898 (899)
+.+...|+||++...+++++||||.+||..|+..+ ..||+||.+|..++++|++.
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~p~ 69 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLPT 69 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECBCTT
T ss_pred CCCCCEEEEECCCCCCEEEECCCCHHHHHHHHHHC-----CCCCCCCCHHHCEEEEEECC
T ss_conf 99999947818526747997898887899999746-----84879884210759997076
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=91.99 Aligned_cols=56 Identities=29% Similarity=0.771 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 6532211211234652188168971047232898621299998778645566376873599
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYARS 899 (899)
Q Consensus 839 ~~~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a~s 899 (899)
..+...|+||++..++++|+||+|++||..|+.. ...||+||.+|..++++|.+.|
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~i~~~~s 67 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFALSGPSS 67 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEECCCSSCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHC-----CCCCCCCCCCHHCEEEEECCCC
T ss_conf 7899999774848988899889873126879863-----8979787741101478514899
No 4
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=1.00 E-value=1 Score=90.83 Aligned_cols=57 Identities=28% Similarity=0.630 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCCCCEEEE--CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 5322112112346521881--689710472328986212999987786455663768735
Q 002627 840 KRERECVMCLSEEMSVVFL--PCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYA 897 (899)
Q Consensus 840 ~~~~eC~IC~d~~~~vVll--PCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a 897 (899)
.+...|+||+++.++++++ ||||.++|..|+..+.... ..||+||.+|..++++|++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCCEEEEEECC
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCCCCCHHCEEEEECC
T ss_conf 9909897588777977997889998642899999999809-9497739531231866568
No 5
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=1.00 E-value=1 Score=90.36 Aligned_cols=58 Identities=28% Similarity=0.511 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCEEEE--CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 65322112112346521881--689710472328986212999987786455663768735
Q 002627 839 VKRERECVMCLSEEMSVVFL--PCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYA 897 (899)
Q Consensus 839 ~~~~~eC~IC~d~~~~vVll--PCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a 897 (899)
.+....|+||++.+++++++ ||||+++|..|+..+...+ ..||+||.+|..++++|++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCCCCCHHHCEEEEECC
T ss_conf 88499786469847774999269988837999999999859-9287969503413977549
No 6
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=1.00 E-value=1 Score=87.48 Aligned_cols=54 Identities=30% Similarity=0.839 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 65322112112346521881689710472328986212999987786455663768735
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYA 897 (899)
Q Consensus 839 ~~~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a 897 (899)
+.+...|.||++...+.+++||||.+||..|+..+ ..||+||.+|..++++|++
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCC-----CCCCCCCCCCCCCEEEEEC
T ss_conf 75699997799899999980899935888863557-----6477849481084988509
No 7
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=87.11 Aligned_cols=54 Identities=30% Similarity=0.855 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 65322112112346521881689710472328986212999987786455663768735
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYA 897 (899)
Q Consensus 839 ~~~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a 897 (899)
+.+...|+||++...+.+++||||.+||..|+.. ...||+||.+|..+++||++
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHC-----CCCCCCCCCEECCCEEEECC
T ss_conf 8999999748878999799669999999988308-----89790279151072988519
No 8
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=1.00 E-value=1 Score=86.97 Aligned_cols=56 Identities=27% Similarity=0.643 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 322112112346521881689710472328986212999987786455663768735
Q 002627 841 RERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYA 897 (899)
Q Consensus 841 ~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~irVf~a 897 (899)
....|+||++...+.+++||||. ||..|+..|..+....||+||.+|.....+++.
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCCCCCCCCCCEEEECCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
T ss_conf 89989715768888387479983-317999999965999899998826776057548
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=80.55 Aligned_cols=51 Identities=31% Similarity=0.699 Sum_probs=44.3
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 32211211234652188168971047232898621299998778645566376
Q 002627 841 RERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIP 893 (899)
Q Consensus 841 ~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~ir 893 (899)
+...|+||++...+.+++||||. ||..|+..|... ...||+||.+|.....
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 102 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKR-KIECPICRKDIKSKTY 102 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTT-CSBCTTTCCBCCCEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCC-CCHHHHHHHHHC-CCCCCCCCCCCCCCCC
T ss_conf 15997562723279667889998-469999999976-9969999982788997
No 10
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=75.91 Aligned_cols=52 Identities=27% Similarity=0.585 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 65322112112346521881689710472328986212999987786455663
Q 002627 839 VKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRR 891 (899)
Q Consensus 839 ~~~~~eC~IC~d~~~~vVllPCgH~vfC~~Ca~~~~~~~~~kCP~CR~~I~~~ 891 (899)
+.....|.||++...+.+++||||. ||..|+..|...+...||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCCCCEEECCCHHHCCCEECCCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 7427990057904259888289990-319999999983989599988357887
Done!