BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002628
(899 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 15/214 (7%)
Query: 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDV 697
G +PD++H HDWQ A P+Y + S T HN +QG A + L
Sbjct: 128 GWRPDMVHAHDWQAAMT-PVYMRYAETPEIPS---LLTIHNIAFQGQFGANIFSKLALPA 183
Query: 698 QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQGLHSTLNFHSK 752
M+ ++ ++ LKG + + ++TVSPSYA+E G GL + +
Sbjct: 184 HAFG----MEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAH 239
Query: 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 812
GI+NGID D WNPATD + Y+A +L+ +A NK+++ +H + D PL I
Sbjct: 240 VLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRID--DDGSPLFCVI 297
Query: 813 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPV 846
+RL QKG+ L+ A+ + LGG+ ++LG+ V
Sbjct: 298 SRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDV 331
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 15/214 (7%)
Query: 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDV 697
G +PD +H HDWQ A P+Y + S T HN +QG A + L
Sbjct: 128 GWRPDXVHAHDWQAAXT-PVYXRYAETPEIPS---LLTIHNIAFQGQFGANIFSKLALPA 183
Query: 698 QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQGLHSTLNFHSK 752
+ ++ ++ LKG + + ++TVSPSYA+E G GL + +
Sbjct: 184 HAFG----XEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGXGLEGVIGSRAH 239
Query: 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 812
GI+NGID D WNPATD + Y+A +L+ +A NK+++ +H + D PL I
Sbjct: 240 VLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRID--DDGSPLFCVI 297
Query: 813 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPV 846
+RL QKG+ L A+ + LGG+ ++LG+ V
Sbjct: 298 SRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDV 331
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 20/216 (9%)
Query: 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699
+PD++H HDW A +AP Y +G A+ FT HN YQG A + L
Sbjct: 129 RPDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSF 183
Query: 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE--------GGQGLHSTLNFHS 751
N + + +I+ LK + +++ +T VSP+YA+E G +GL +
Sbjct: 184 FN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRH-RE 238
Query: 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGC 811
+ G+LNG+D W+P TD L +Y + L+ KAENK ++ +GL D + PL
Sbjct: 239 GRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAV 297
Query: 812 ITRLVPQKGVHLIRHAIYRTLELGGQFILLGSS-PV 846
++RL QKG+ L+ A+ LE GGQ LLG+ PV
Sbjct: 298 VSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV 333
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 20/216 (9%)
Query: 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699
+PD++H HDW A +AP Y +G A+ FT HN YQG A + L
Sbjct: 129 RPDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSF 183
Query: 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE--------GGQGLHSTLNFHS 751
N + + +I+ LK + +++ +T VSP+YA+E G +GL +
Sbjct: 184 FN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRH-RE 238
Query: 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGC 811
+ G+LNG+D W+P TD L +Y + L+ KAENK ++ +GL D + PL
Sbjct: 239 GRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAV 297
Query: 812 ITRLVPQKGVHLIRHAIYRTLELGGQFILLGSS-PV 846
++RL QKG+ L+ A+ LE GGQ LLG+ PV
Sbjct: 298 VSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV 333
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 20/216 (9%)
Query: 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699
+PD++H HDW A +AP Y +G A+ FT HN YQG A + L
Sbjct: 129 RPDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSF 183
Query: 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE--------GGQGLHSTLNFHS 751
N + + +I+ LK + +++ +T VSP+YA+E G +GL +
Sbjct: 184 FN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRH-RE 238
Query: 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGC 811
+ G+LNG+D W+P TD L +Y + L+ KAENK ++ +GL D + PL
Sbjct: 239 GRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAV 297
Query: 812 ITRLVPQKGVHLIRHAIYRTLELGGQFILLGSS-PV 846
++RL QKG+ L+ A+ LE GGQ LLG+ PV
Sbjct: 298 VSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV 333
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 160/379 (42%), Gaps = 69/379 (18%)
Query: 512 LHVIHIAAEMAPXXXXXXXXXXXXXXXXXXQKKGHLVEIVLPKYDCMQY----------- 560
++V+ + AEMAP GH V ++ P+YD QY
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYD--QYKDAWDTSVVAE 67
Query: 561 ----DRIDDLRALDV----VVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQ 612
DR + +R V + D F KVW T E + + PD G
Sbjct: 68 IKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKI-------YGPDT----GV 116
Query: 613 FYGEHDDXXXXXXXXXAALEL--LLQAGKQP--------DIIH-CHDWQTAFVAPLYWDL 661
Y D+ AALE +L P D++ C+DW T +A +
Sbjct: 117 DY--KDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNN 174
Query: 662 YVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD--- 713
Y P G+ +A+V F HN YQG + D +LN +R + + +D
Sbjct: 175 YQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFRSSFDFIDGYDTPV 227
Query: 714 ---RINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS----KKFVGILNGIDTDAW 766
+IN +K I+ ++ V TVSP YA+E G+ + GI+NG+D W
Sbjct: 228 EGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEW 287
Query: 767 NPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR 825
+P+ D ++ +Y+A ++ KA NKE+++ GL D + PL+ I RL QKG ++
Sbjct: 288 DPSKDKYITAKYDATTAIEAKALNKEALQAEAGL-PVDRKIPLIAFIGRLEEQKGPDVMA 346
Query: 826 HAIYRTLELGGQFILLGSS 844
AI ++ Q +LLG+
Sbjct: 347 AAIPELMQEDVQIVLLGTG 365
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 40/197 (20%)
Query: 634 LLQAGKQPDIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELAS 692
LL+ PD++H HDW T F L + +P FT H + PA
Sbjct: 116 LLREEPLPDVVHFHDWHTVFAGALIKKYFKIP-------AVFTIHRLN-KSKLPAFYFHE 167
Query: 693 CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSY-AQEGGQGLHSTLNFHS 751
GL + PD I+P ++IVTTVS Y E G NF
Sbjct: 168 AGLS-ELAPYPD----------IDPEHTGGYIADIVTTVSRGYLIDEWG----FFRNFEG 212
Query: 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGC 811
K + NGID WN + T + E K+S+ G+ +G
Sbjct: 213 -KITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDEG-VTFMFIGR 259
Query: 812 ITRLVPQKGVHLIRHAI 828
R QKGV ++ AI
Sbjct: 260 FDR--GQKGVDVLLKAI 274
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 40/197 (20%)
Query: 634 LLQAGKQPDIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELAS 692
LL+ PD++H HDW T F L + +P FT H + PA
Sbjct: 116 LLREEPLPDVVHFHDWHTVFAGALIKKYFKIP-------AVFTIHRLN-KSKLPAFYFHE 167
Query: 693 CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSY-AQEGGQGLHSTLNFHS 751
GL + PD I+P ++IVTTVS Y E G NF
Sbjct: 168 AGLS-ELAPYPD----------IDPEHTGGYIADIVTTVSRGYLIDEWG----FFRNFEG 212
Query: 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGC 811
K + NGID WN + T + E K+S+ G+ +G
Sbjct: 213 -KITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDEG-VTFMFIGR 259
Query: 812 ITRLVPQKGVHLIRHAI 828
R QKGV ++ AI
Sbjct: 260 FDR--GQKGVDVLLKAI 274
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 40/197 (20%)
Query: 634 LLQAGKQPDIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELAS 692
LL+ PD++H HDW T F L + +P FT H + PA
Sbjct: 117 LLREEPLPDVVHFHDWHTVFAGALIKKYFKIP-------AVFTIHRLN-KSKLPAFYFHE 168
Query: 693 CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSY-AQEGGQGLHSTLNFHS 751
GL + PD I+P ++IVTTVS Y E G NF
Sbjct: 169 AGLS-ELAPYPD----------IDPEHTGGYIADIVTTVSRGYLIDEWG----FFRNFEG 213
Query: 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGC 811
K + NGID WN + T + E K+S+ G+ +G
Sbjct: 214 -KITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDEG-VTFMFIGR 260
Query: 812 ITRLVPQKGVHLIRHAI 828
R QKGV ++ AI
Sbjct: 261 FDR--GQKGVDVLLKAI 275
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 19/62 (30%)
Query: 759 NGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQ 818
+G+D + PAT E+K + RK LG + P++ C +RLVP+
Sbjct: 170 SGVDVKRFTPATP----------------EDKSATRKKLGFTDT---TPVIACNSRLVPR 210
Query: 819 KG 820
KG
Sbjct: 211 KG 212
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 19/62 (30%)
Query: 759 NGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQ 818
+G+D + PAT E+K + RK LG + P++ C +RLVP+
Sbjct: 170 SGVDVKRFTPAT----------------PEDKSATRKKLGFTDT---TPVIACNSRLVPR 210
Query: 819 KG 820
KG
Sbjct: 211 KG 212
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 91 IDREPIDVEHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNI 147
ID+E +++ HT+ N +V +L +L +G E+L L++LIS + +NI
Sbjct: 19 IDKETMNIHHTKHHN---TYVTKLNGAL----EGHEDLKNKSLNDLISNLDAVPENI 68
>pdb|3L8M|A Chain A, Crystal Structure Of A Probable Thiamine Pyrophosphokinase
From Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Id Syr86
pdb|3L8M|B Chain B, Crystal Structure Of A Probable Thiamine Pyrophosphokinase
From Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Id Syr86
Length = 212
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 836 GQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHI 895
GQF + S P+I P++ + L+ +N+ N +KLG LT++N +I
Sbjct: 140 GQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLGS--TLTISNELSQSCGNI 197
Query: 896 EV 897
E+
Sbjct: 198 EI 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,592,877
Number of Sequences: 62578
Number of extensions: 998370
Number of successful extensions: 3053
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2977
Number of HSP's gapped (non-prelim): 92
length of query: 899
length of database: 14,973,337
effective HSP length: 108
effective length of query: 791
effective length of database: 8,214,913
effective search space: 6497996183
effective search space used: 6497996183
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)