Query 002628
Match_columns 899
No_of_seqs 231 out of 1832
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 2E-204 4E-209 1803.0 74.5 852 1-891 1-891 (977)
2 PRK14099 glycogen synthase; Pr 100.0 3.1E-56 6.8E-61 512.9 32.6 366 509-891 1-404 (485)
3 PLN02316 synthase/transferase 100.0 6.7E-56 1.4E-60 537.7 32.6 401 441-891 506-954 (1036)
4 PRK14098 glycogen synthase; Pr 100.0 1.2E-55 2.5E-60 508.7 32.5 369 509-891 3-416 (489)
5 TIGR02095 glgA glycogen/starch 100.0 4.9E-54 1.1E-58 490.5 33.2 367 512-890 1-399 (473)
6 PRK00654 glgA glycogen synthas 100.0 3E-54 6.4E-59 492.8 31.3 360 512-891 1-391 (466)
7 COG0297 GlgA Glycogen synthase 100.0 8.1E-52 1.8E-56 473.1 29.0 366 512-891 1-403 (487)
8 cd03791 GT1_Glycogen_synthase_ 100.0 1.3E-50 2.9E-55 459.9 33.5 370 513-890 1-404 (476)
9 TIGR02094 more_P_ylases alpha- 100.0 3.8E-34 8.3E-39 336.5 30.1 368 514-886 1-511 (601)
10 PF08323 Glyco_transf_5: Starc 100.0 4.7E-35 1E-39 310.1 13.7 229 513-748 1-244 (245)
11 cd04299 GT1_Glycogen_Phosphory 100.0 2.4E-29 5.2E-34 301.4 28.8 371 513-886 87-600 (778)
12 TIGR02472 sucr_P_syn_N sucrose 100.0 1.7E-28 3.7E-33 278.6 28.2 301 526-886 24-369 (439)
13 TIGR02470 sucr_synth sucrose s 100.0 5.5E-28 1.2E-32 289.2 30.2 362 486-890 234-676 (784)
14 TIGR03449 mycothiol_MshA UDP-N 100.0 8.5E-28 1.8E-32 266.7 26.0 294 514-887 1-332 (405)
15 cd03796 GT1_PIG-A_like This fa 100.0 6.1E-28 1.3E-32 269.3 24.7 278 513-891 1-304 (398)
16 TIGR02468 sucrsPsyn_pln sucros 100.0 9.4E-28 2E-32 292.3 27.9 348 507-890 165-605 (1050)
17 TIGR02149 glgA_Coryne glycogen 100.0 2.7E-27 5.8E-32 259.7 26.0 279 512-886 1-309 (388)
18 PRK10307 putative glycosyl tra 100.0 5.4E-27 1.2E-31 262.2 26.8 305 512-887 1-337 (412)
19 PLN02871 UDP-sulfoquinovose:DA 100.0 5.4E-27 1.2E-31 268.0 25.5 286 509-886 56-360 (465)
20 cd04962 GT1_like_5 This family 99.9 4.7E-26 1E-30 247.0 26.4 277 512-886 1-299 (371)
21 PRK10125 putative glycosyl tra 99.9 2.7E-26 5.9E-31 259.4 22.6 303 512-890 1-340 (405)
22 PLN00142 sucrose synthase 99.9 4.9E-26 1.1E-30 272.8 25.1 352 486-886 258-695 (815)
23 cd03800 GT1_Sucrose_synthase T 99.9 3.4E-25 7.3E-30 241.7 25.9 281 527-886 20-331 (398)
24 cd03812 GT1_CapH_like This fam 99.9 4.8E-25 1E-29 237.2 25.3 277 513-891 1-301 (358)
25 cd03802 GT1_AviGT4_like This f 99.9 2.1E-24 4.6E-29 230.1 25.5 251 512-891 1-279 (335)
26 cd03819 GT1_WavL_like This fam 99.9 3E-24 6.5E-29 230.8 26.5 261 526-889 8-296 (355)
27 cd04951 GT1_WbdM_like This fam 99.9 2.3E-24 5E-29 231.1 25.5 270 513-888 1-293 (360)
28 TIGR03088 stp2 sugar transfera 99.9 1.5E-24 3.2E-29 238.0 24.5 276 512-891 2-307 (374)
29 PLN02846 digalactosyldiacylgly 99.9 1.1E-24 2.4E-29 249.6 23.2 303 510-886 3-329 (462)
30 cd04955 GT1_like_6 This family 99.9 8.3E-24 1.8E-28 227.6 27.9 276 513-890 1-301 (363)
31 cd03805 GT1_ALG2_like This fam 99.9 1.5E-24 3.2E-29 238.3 21.7 292 512-891 1-334 (392)
32 cd03792 GT1_Trehalose_phosphor 99.9 3.3E-24 7.1E-29 236.5 23.1 268 513-886 1-302 (372)
33 PRK15484 lipopolysaccharide 1, 99.9 1E-23 2.2E-28 235.4 25.4 267 513-887 4-307 (380)
34 cd03793 GT1_Glycogen_synthase_ 99.9 7.4E-24 1.6E-28 245.5 23.0 286 517-832 7-325 (590)
35 cd03821 GT1_Bme6_like This fam 99.9 2E-23 4.2E-28 220.7 24.4 286 513-890 1-314 (375)
36 cd03818 GT1_ExpC_like This fam 99.9 3.5E-23 7.7E-28 230.7 27.0 288 513-887 1-330 (396)
37 cd03807 GT1_WbnK_like This fam 99.9 2.4E-23 5.2E-28 219.2 23.7 277 513-890 1-301 (365)
38 cd03795 GT1_like_4 This family 99.9 4.9E-23 1.1E-27 220.6 25.1 272 513-889 1-297 (357)
39 KOG1111 N-acetylglucosaminyltr 99.9 1.2E-23 2.6E-28 228.5 16.3 281 512-892 1-307 (426)
40 cd03817 GT1_UGDG_like This fam 99.9 2.2E-22 4.8E-27 213.1 24.1 287 513-892 1-313 (374)
41 cd03823 GT1_ExpE7_like This fa 99.9 2.7E-22 5.9E-27 212.3 24.3 271 513-889 1-295 (359)
42 PRK15179 Vi polysaccharide bio 99.9 3.5E-22 7.5E-27 238.9 26.6 295 509-886 278-620 (694)
43 PRK15427 colanic acid biosynth 99.9 2.3E-22 5.1E-27 227.1 23.7 187 638-886 116-333 (406)
44 cd03794 GT1_wbuB_like This fam 99.9 5.7E-22 1.2E-26 209.9 24.9 301 513-887 1-329 (394)
45 PRK09922 UDP-D-galactose:(gluc 99.9 2.2E-22 4.7E-27 221.9 21.9 258 512-887 1-287 (359)
46 cd03825 GT1_wcfI_like This fam 99.9 3E-22 6.5E-27 215.2 22.4 263 512-886 1-293 (365)
47 cd03814 GT1_like_2 This family 99.9 4.5E-22 9.7E-27 211.5 22.8 282 513-891 1-300 (364)
48 cd03809 GT1_mtfB_like This fam 99.9 3.5E-22 7.7E-27 212.8 21.0 280 513-891 1-306 (365)
49 cd03799 GT1_amsK_like This is 99.9 1.7E-21 3.6E-26 208.7 23.6 261 513-888 1-292 (355)
50 PLN02501 digalactosyldiacylgly 99.9 3.4E-21 7.3E-26 225.8 27.4 415 384-890 175-651 (794)
51 cd03811 GT1_WabH_like This fam 99.9 1.4E-21 3.1E-26 203.8 21.4 272 513-890 1-296 (353)
52 cd03801 GT1_YqgM_like This fam 99.9 4.7E-21 1E-25 199.9 25.4 281 513-888 1-306 (374)
53 cd03822 GT1_ecORF704_like This 99.9 4.9E-21 1.1E-25 204.2 24.5 267 513-890 1-302 (366)
54 cd05844 GT1_like_7 Glycosyltra 99.9 1.3E-21 2.8E-26 212.1 20.2 270 513-888 1-301 (367)
55 cd03820 GT1_amsD_like This fam 99.9 7E-21 1.5E-25 198.7 24.3 258 513-886 1-281 (348)
56 cd03816 GT1_ALG1_like This fam 99.9 5.2E-21 1.1E-25 216.3 25.0 291 512-887 4-347 (415)
57 cd03808 GT1_cap1E_like This fa 99.9 2.1E-20 4.5E-25 196.0 26.3 268 513-887 1-293 (359)
58 cd03798 GT1_wlbH_like This fam 99.9 2E-20 4.3E-25 196.5 25.7 286 514-890 1-311 (377)
59 PRK15490 Vi polysaccharide bio 99.9 1.4E-20 3E-25 218.3 22.6 138 724-886 339-501 (578)
60 cd03806 GT1_ALG11_like This fa 99.8 5.7E-20 1.2E-24 208.5 23.6 300 521-890 6-358 (419)
61 PLN02275 transferase, transfer 99.8 1.9E-19 4E-24 200.5 22.7 277 527-887 14-339 (371)
62 TIGR03087 stp1 sugar transfera 99.8 2.5E-20 5.5E-25 208.2 15.2 204 638-887 102-328 (397)
63 cd03813 GT1_like_3 This family 99.8 3.2E-19 7E-24 205.2 15.1 200 639-886 172-399 (475)
64 PLN02949 transferase, transfer 99.8 2.8E-17 6.1E-22 189.5 27.8 139 718-890 214-388 (463)
65 cd03804 GT1_wbaZ_like This fam 99.8 6.4E-18 1.4E-22 184.1 16.5 129 717-889 146-292 (351)
66 PHA01633 putative glycosyl tra 99.7 3.9E-17 8.4E-22 181.2 20.0 143 722-890 90-257 (335)
67 PHA01630 putative group 1 glyc 99.7 1.2E-17 2.7E-22 184.8 15.6 137 722-893 92-246 (331)
68 PRK00726 murG undecaprenyldiph 99.7 6.9E-17 1.5E-21 177.5 20.6 259 512-887 2-278 (357)
69 TIGR02918 accessory Sec system 99.7 1.7E-17 3.6E-22 193.0 16.0 188 638-886 209-421 (500)
70 cd03785 GT1_MurG MurG is an N- 99.7 4.1E-16 8.9E-21 169.6 21.5 257 513-886 1-277 (350)
71 TIGR01133 murG undecaprenyldip 99.7 6.5E-16 1.4E-20 168.0 21.6 259 512-890 1-280 (348)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.7 1.1E-16 2.5E-21 184.2 16.2 227 620-891 111-399 (460)
73 cd04946 GT1_AmsK_like This fam 99.7 4.5E-16 9.7E-21 175.9 17.7 190 638-891 125-345 (407)
74 TIGR02400 trehalose_OtsA alpha 99.7 5.9E-16 1.3E-20 178.3 16.0 228 621-893 108-396 (456)
75 cd04949 GT1_gtfA_like This fam 99.7 1.2E-15 2.6E-20 167.4 15.3 187 639-886 98-307 (372)
76 PF05693 Glycogen_syn: Glycoge 99.6 1E-14 2.2E-19 169.4 17.5 282 517-832 2-320 (633)
77 cd01635 Glycosyltransferase_GT 99.6 4.2E-14 9.1E-19 140.7 18.5 83 811-893 109-217 (229)
78 PRK05749 3-deoxy-D-manno-octul 99.5 2.8E-13 6.1E-18 153.2 21.9 142 717-887 171-350 (425)
79 PRK13609 diacylglycerol glucos 99.5 6.9E-13 1.5E-17 147.5 20.9 273 510-886 3-298 (380)
80 PF13439 Glyco_transf_4: Glyco 99.5 4E-13 8.7E-18 129.6 15.1 174 517-766 3-176 (177)
81 PLN03063 alpha,alpha-trehalose 99.5 2E-13 4.4E-18 166.7 16.1 207 640-891 147-414 (797)
82 PRK14501 putative bifunctional 99.5 1.8E-13 3.9E-18 166.0 15.1 219 627-890 120-399 (726)
83 PLN02605 monogalactosyldiacylg 99.5 6E-13 1.3E-17 149.1 16.2 192 628-886 90-307 (382)
84 PF13579 Glyco_trans_4_4: Glyc 99.4 6.5E-13 1.4E-17 126.1 12.0 160 528-760 1-160 (160)
85 cd04950 GT1_like_1 Glycosyltra 99.4 3E-11 6.5E-16 134.9 23.9 186 638-888 100-309 (373)
86 PRK13608 diacylglycerol glucos 99.3 4.1E-11 8.9E-16 135.1 16.2 131 723-886 146-298 (391)
87 TIGR02398 gluc_glyc_Psyn gluco 99.3 3.9E-11 8.4E-16 139.4 16.3 208 640-892 132-421 (487)
88 PF00534 Glycos_transf_1: Glyc 99.2 1.8E-11 3.9E-16 120.3 7.9 98 790-890 2-125 (172)
89 PRK00025 lpxB lipid-A-disaccha 99.2 2.3E-10 5E-15 126.9 16.4 184 631-886 78-285 (380)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 2.4E-10 5.1E-15 125.5 14.0 194 629-886 79-301 (363)
91 TIGR00236 wecB UDP-N-acetylglu 99.0 1.7E-09 3.7E-14 120.0 13.7 193 630-887 78-299 (365)
92 PLN03064 alpha,alpha-trehalose 99.0 2.2E-09 4.9E-14 132.3 15.5 207 640-891 231-498 (934)
93 TIGR00215 lpxB lipid-A-disacch 99.0 1.5E-08 3.3E-13 114.7 17.7 185 629-884 80-289 (385)
94 KOG0853 Glycosyltransferase [C 98.9 5.6E-09 1.2E-13 120.6 12.4 309 506-889 29-397 (495)
95 COG0438 RfaG Glycosyltransfera 98.8 3.2E-08 7E-13 101.4 13.2 135 724-891 150-311 (381)
96 PF09314 DUF1972: Domain of un 98.7 3.4E-07 7.4E-12 94.5 16.3 179 513-762 3-185 (185)
97 PF13477 Glyco_trans_4_2: Glyc 98.6 1.8E-06 3.8E-11 82.5 15.7 137 513-732 1-139 (139)
98 PRK09814 beta-1,6-galactofuran 98.6 9.5E-07 2E-11 97.8 15.5 185 638-894 61-273 (333)
99 PRK12446 undecaprenyldiphospho 98.4 4.4E-05 9.5E-10 85.9 23.4 170 638-885 89-276 (352)
100 COG0058 GlgP Glucan phosphoryl 98.4 2.7E-06 5.9E-11 102.5 14.0 355 522-879 110-600 (750)
101 PF13692 Glyco_trans_1_4: Glyc 98.4 5.7E-07 1.2E-11 85.1 6.5 82 806-887 2-101 (135)
102 KOG1387 Glycosyltransferase [C 98.3 1.3E-05 2.9E-10 88.7 16.7 205 638-890 148-390 (465)
103 cd04300 GT1_Glycogen_Phosphory 98.2 3.5E-05 7.7E-10 94.1 18.5 250 640-891 300-664 (797)
104 KOG3742 Glycogen synthase [Car 98.2 3.8E-07 8.2E-12 102.7 0.5 167 641-832 175-351 (692)
105 PRK14986 glycogen phosphorylas 98.1 4.8E-05 1E-09 93.0 16.1 240 640-884 313-670 (815)
106 TIGR02093 P_ylase glycogen/sta 98.0 3.4E-05 7.3E-10 94.1 13.1 250 640-891 297-661 (794)
107 PF00982 Glyco_transf_20: Glyc 98.0 0.00015 3.3E-09 84.9 16.5 224 623-890 124-410 (474)
108 PF00862 Sucrose_synth: Sucros 97.9 0.00018 3.9E-09 83.6 15.3 241 486-771 251-532 (550)
109 PRK10117 trehalose-6-phosphate 97.9 0.0002 4.3E-09 83.7 15.4 196 640-881 123-375 (474)
110 COG0380 OtsA Trehalose-6-phosp 97.8 0.00042 9.1E-09 81.0 16.9 214 620-879 127-400 (486)
111 PRK14985 maltodextrin phosphor 97.8 0.00026 5.7E-09 86.4 15.4 247 640-891 302-663 (798)
112 PLN02205 alpha,alpha-trehalose 97.7 0.0004 8.7E-09 86.6 15.5 210 625-880 189-458 (854)
113 COG0707 MurG UDP-N-acetylgluco 97.6 0.0043 9.2E-08 70.5 20.1 247 526-885 9-276 (357)
114 PF00343 Phosphorylase: Carboh 97.6 0.00044 9.5E-09 83.8 12.6 240 640-881 214-568 (713)
115 TIGR03713 acc_sec_asp1 accesso 97.3 0.0005 1.1E-08 81.5 8.3 78 807-886 320-456 (519)
116 TIGR00606 rad50 rad50. This fa 97.3 0.08 1.7E-06 69.6 27.9 140 133-313 767-906 (1311)
117 TIGR02169 SMC_prok_A chromosom 97.2 0.11 2.3E-06 66.6 28.5 54 132-185 675-728 (1164)
118 PRK02224 chromosome segregatio 97.2 0.11 2.4E-06 65.2 27.4 119 245-366 414-553 (880)
119 PF15070 GOLGA2L5: Putative go 97.1 0.041 8.8E-07 66.7 21.8 193 170-406 19-227 (617)
120 PRK02224 chromosome segregatio 97.1 0.12 2.5E-06 65.1 26.5 34 157-190 188-223 (880)
121 PHA02562 46 endonuclease subun 97.1 0.1 2.2E-06 62.0 24.1 62 246-307 216-281 (562)
122 PF04007 DUF354: Protein of un 97.0 0.085 1.8E-06 59.7 21.9 254 512-891 1-277 (335)
123 TIGR02169 SMC_prok_A chromosom 97.0 0.16 3.4E-06 65.1 26.5 14 386-399 956-969 (1164)
124 TIGR02168 SMC_prok_B chromosom 96.9 0.25 5.4E-06 63.1 27.6 16 353-368 968-983 (1179)
125 TIGR02168 SMC_prok_B chromosom 96.9 0.35 7.6E-06 61.8 28.9 57 131-187 670-726 (1179)
126 PRK03918 chromosome segregatio 96.9 0.3 6.6E-06 61.3 27.2 23 821-843 830-852 (880)
127 KOG0933 Structural maintenance 96.8 0.09 1.9E-06 65.4 20.4 244 156-445 674-922 (1174)
128 PF12000 Glyco_trans_4_3: Gkyc 96.8 0.015 3.3E-07 59.8 12.0 41 719-766 130-170 (171)
129 TIGR03590 PseG pseudaminic aci 96.6 0.18 4E-06 55.1 20.0 74 806-885 171-264 (279)
130 PF07888 CALCOCO1: Calcium bin 96.6 0.3 6.6E-06 58.2 22.7 167 247-419 203-395 (546)
131 TIGR00606 rad50 rad50. This fa 96.6 0.32 6.9E-06 64.2 25.4 109 250-369 792-900 (1311)
132 KOG2941 Beta-1,4-mannosyltrans 96.6 0.26 5.7E-06 55.7 20.7 222 638-886 101-370 (444)
133 KOG0971 Microtubule-associated 96.6 0.82 1.8E-05 56.7 26.1 181 197-428 339-547 (1243)
134 KOG4643 Uncharacterized coiled 96.6 0.37 8E-06 60.2 23.4 125 249-376 263-405 (1195)
135 KOG0161 Myosin class II heavy 96.4 0.35 7.5E-06 65.0 23.9 135 278-420 1762-1896(1930)
136 cd03784 GT1_Gtf_like This fami 96.3 0.23 4.9E-06 56.1 19.1 73 805-884 239-327 (401)
137 PF13528 Glyco_trans_1_3: Glyc 96.3 0.27 5.9E-06 53.5 19.1 69 805-884 192-273 (318)
138 COG1196 Smc Chromosome segrega 96.2 2.7 5.8E-05 55.1 30.3 57 133-189 669-725 (1163)
139 PRK03918 chromosome segregatio 96.2 1.9 4.2E-05 54.2 28.2 18 409-426 455-472 (880)
140 KOG0996 Structural maintenance 96.2 1.2 2.7E-05 56.7 25.4 61 115-177 240-306 (1293)
141 PRK11637 AmiB activator; Provi 96.2 0.37 8E-06 56.0 20.3 84 130-216 46-129 (428)
142 COG1196 Smc Chromosome segrega 96.2 1.2 2.7E-05 58.1 26.8 6 643-648 1123-1128(1163)
143 PF00038 Filament: Intermediat 96.1 1.6 3.5E-05 48.2 23.7 164 161-368 63-234 (312)
144 PF10174 Cast: RIM-binding pro 96.1 0.63 1.4E-05 58.0 22.1 224 157-391 112-353 (775)
145 KOG0161 Myosin class II heavy 96.1 2.2 4.7E-05 57.8 28.1 102 243-344 978-1101(1930)
146 PF00261 Tropomyosin: Tropomyo 95.9 3.3 7.1E-05 44.7 25.0 74 142-215 12-85 (237)
147 PHA02562 46 endonuclease subun 95.8 1.8 4E-05 51.5 24.2 24 287-310 329-352 (562)
148 PF07888 CALCOCO1: Calcium bin 95.7 3.2 6.9E-05 49.9 24.7 10 447-456 448-457 (546)
149 TIGR03185 DNA_S_dndD DNA sulfu 95.6 0.89 1.9E-05 55.7 21.1 44 266-309 375-419 (650)
150 PF15070 GOLGA2L5: Putative go 95.6 2.7 5.8E-05 51.5 24.5 152 147-341 24-182 (617)
151 PF05701 WEMBL: Weak chloropla 95.5 2.2 4.8E-05 51.2 23.2 48 131-178 34-81 (522)
152 PRK04778 septation ring format 95.5 2.1 4.5E-05 51.9 23.0 156 247-406 314-473 (569)
153 PF12128 DUF3584: Protein of u 95.4 3.9 8.4E-05 53.8 26.7 99 245-345 322-421 (1201)
154 KOG4674 Uncharacterized conser 95.3 4 8.6E-05 54.9 26.0 176 247-431 1001-1203(1822)
155 PF12718 Tropomyosin_1: Tropom 95.3 0.38 8.3E-06 48.2 13.5 102 313-414 1-106 (143)
156 KOG0996 Structural maintenance 95.3 0.98 2.1E-05 57.5 19.5 86 130-215 784-876 (1293)
157 PRK01156 chromosome segregatio 95.2 4.4 9.5E-05 51.5 25.9 27 245-271 418-444 (895)
158 KOG0980 Actin-binding protein 95.2 8.4 0.00018 48.3 26.4 182 169-397 361-546 (980)
159 TIGR02919 accessory Sec system 95.1 0.057 1.2E-06 63.2 8.1 63 822-885 291-375 (438)
160 KOG0612 Rho-associated, coiled 95.1 4.3 9.3E-05 52.3 24.1 111 296-407 582-693 (1317)
161 PRK01156 chromosome segregatio 94.8 8.2 0.00018 49.1 26.6 27 403-429 466-492 (895)
162 COG0419 SbcC ATPase involved i 94.8 17 0.00038 46.5 34.2 22 522-543 811-832 (908)
163 TIGR03185 DNA_S_dndD DNA sulfu 94.8 4.1 8.8E-05 50.1 23.0 28 343-370 391-418 (650)
164 PF09726 Macoilin: Transmembra 94.7 1.5 3.2E-05 54.4 19.0 93 201-304 422-518 (697)
165 TIGR00661 MJ1255 conserved hyp 94.7 2.3 5E-05 47.1 19.0 60 820-885 199-271 (321)
166 PF12718 Tropomyosin_1: Tropom 94.6 1.5 3.2E-05 44.1 15.6 87 326-412 49-139 (143)
167 KOG0971 Microtubule-associated 94.6 2.4 5.2E-05 52.9 19.6 218 170-427 273-504 (1243)
168 KOG4674 Uncharacterized conser 94.5 10 0.00022 51.3 26.4 155 127-303 1208-1368(1822)
169 PF15294 Leu_zip: Leucine zipp 94.4 4.3 9.2E-05 45.1 19.7 87 243-340 125-211 (278)
170 KOG0976 Rho/Rac1-interacting s 94.2 7.9 0.00017 48.0 22.7 88 166-274 120-207 (1265)
171 PF12128 DUF3584: Protein of u 94.2 18 0.0004 47.8 28.3 52 131-182 614-665 (1201)
172 PRK01021 lpxB lipid-A-disaccha 94.2 5.1 0.00011 48.9 21.4 86 790-884 400-510 (608)
173 TIGR01005 eps_transp_fam exopo 94.0 8.7 0.00019 47.9 24.0 39 511-553 545-583 (754)
174 COG0763 LpxB Lipid A disacchar 94.0 1.1 2.4E-05 51.4 14.8 89 789-884 174-286 (381)
175 PF04849 HAP1_N: HAP1 N-termin 93.9 2.1 4.5E-05 48.0 16.3 136 245-406 162-301 (306)
176 PRK04863 mukB cell division pr 93.9 11 0.00024 50.6 25.6 58 370-431 431-488 (1486)
177 KOG4673 Transcription factor T 93.9 22 0.00047 43.8 25.9 176 244-425 454-656 (961)
178 PRK11637 AmiB activator; Provi 93.8 3.3 7.1E-05 48.3 18.7 15 203-217 123-137 (428)
179 PF05557 MAD: Mitotic checkpoi 93.8 0.017 3.8E-07 71.2 0.0 161 262-426 286-467 (722)
180 KOG0964 Structural maintenance 93.8 5.5 0.00012 50.4 20.6 204 129-345 676-901 (1200)
181 PLN03229 acetyl-coenzyme A car 93.7 1.4 3.1E-05 54.2 15.6 147 197-365 429-612 (762)
182 COG3883 Uncharacterized protei 93.7 2.5 5.4E-05 46.6 16.0 171 128-311 21-192 (265)
183 PF05667 DUF812: Protein of un 93.5 23 0.00051 43.4 25.5 110 247-370 423-532 (594)
184 TIGR00634 recN DNA repair prot 93.4 8.8 0.00019 46.4 21.9 20 374-393 322-341 (563)
185 KOG4673 Transcription factor T 93.3 15 0.00032 45.1 22.6 219 244-482 417-668 (961)
186 PF05622 HOOK: HOOK protein; 93.3 0.024 5.1E-07 70.0 0.0 157 247-405 456-625 (713)
187 PF06160 EzrA: Septation ring 93.3 8 0.00017 46.9 21.2 101 115-221 59-160 (560)
188 KOG0250 DNA repair protein RAD 93.2 12 0.00027 48.0 22.9 69 140-219 209-277 (1074)
189 COG0419 SbcC ATPase involved i 93.2 27 0.00058 44.9 26.7 103 265-367 275-378 (908)
190 PRK09039 hypothetical protein; 93.2 1.3 2.8E-05 50.5 13.5 41 248-298 65-105 (343)
191 PRK04778 septation ring format 93.1 17 0.00036 44.3 23.6 17 394-410 509-525 (569)
192 KOG0249 LAR-interacting protei 93.0 4.1 9E-05 49.8 17.5 152 252-422 134-285 (916)
193 PRK04863 mukB cell division pr 92.9 7.2 0.00016 52.4 21.4 152 152-321 279-430 (1486)
194 KOG4643 Uncharacterized coiled 92.8 25 0.00055 44.9 24.2 106 306-412 395-512 (1195)
195 COG5185 HEC1 Protein involved 92.7 1.8 3.8E-05 50.6 13.6 102 240-344 261-362 (622)
196 PRK10929 putative mechanosensi 92.7 21 0.00046 46.7 24.6 43 277-320 169-211 (1109)
197 PF05622 HOOK: HOOK protein; 92.6 0.034 7.4E-07 68.6 0.0 182 245-430 195-387 (713)
198 PF00261 Tropomyosin: Tropomyo 92.4 13 0.00029 40.1 19.3 17 353-369 172-188 (237)
199 PF05557 MAD: Mitotic checkpoi 92.2 1.1 2.3E-05 55.8 12.1 63 244-306 462-535 (722)
200 KOG0018 Structural maintenance 92.1 33 0.00071 44.2 24.2 213 159-424 669-899 (1141)
201 KOG0995 Centromere-associated 92.0 4.8 0.0001 48.3 16.4 154 244-421 229-393 (581)
202 KOG0933 Structural maintenance 92.0 19 0.0004 46.1 21.8 84 243-329 294-377 (1174)
203 PF02684 LpxB: Lipid-A-disacch 91.9 3.5 7.7E-05 47.5 15.1 85 791-884 173-282 (373)
204 TIGR01843 type_I_hlyD type I s 91.7 6.8 0.00015 44.6 17.1 36 406-441 246-281 (423)
205 KOG0978 E3 ubiquitin ligase in 91.5 45 0.00098 41.6 24.4 273 135-430 336-625 (698)
206 TIGR03492 conserved hypothetic 91.4 5.7 0.00012 45.9 16.2 27 853-884 292-318 (396)
207 KOG0250 DNA repair protein RAD 91.4 9.3 0.0002 49.0 18.7 151 249-410 733-900 (1074)
208 KOG0977 Nuclear envelope prote 91.2 23 0.00051 42.8 21.1 174 165-368 38-215 (546)
209 PF14915 CCDC144C: CCDC144C pr 91.2 26 0.00056 39.3 19.9 62 364-432 211-272 (305)
210 COG1519 KdtA 3-deoxy-D-manno-o 90.9 26 0.00057 41.1 20.5 141 717-888 170-349 (419)
211 KOG4360 Uncharacterized coiled 90.8 14 0.00031 44.0 18.2 157 246-405 162-346 (596)
212 PF14662 CCDC155: Coiled-coil 90.8 7.6 0.00016 41.0 14.6 145 247-397 26-188 (193)
213 TIGR03568 NeuC_NnaA UDP-N-acet 90.8 6.4 0.00014 44.9 15.6 28 853-885 277-304 (365)
214 PRK09841 cryptic autophosphory 90.8 28 0.00061 43.6 22.4 38 511-552 530-567 (726)
215 TIGR02680 conserved hypothetic 90.8 24 0.00053 47.3 22.9 9 835-843 1306-1314(1353)
216 PF05701 WEMBL: Weak chloropla 90.7 46 0.00099 40.2 24.0 29 252-280 297-325 (522)
217 KOG4809 Rab6 GTPase-interactin 90.7 10 0.00022 45.4 17.0 130 247-396 328-457 (654)
218 TIGR03007 pepcterm_ChnLen poly 90.6 2.7 5.8E-05 49.6 12.9 39 326-364 331-369 (498)
219 KOG0994 Extracellular matrix g 90.6 44 0.00096 43.5 23.0 30 187-216 1492-1523(1758)
220 PF01496 V_ATPase_I: V-type AT 90.6 0.58 1.3E-05 58.4 7.7 102 325-427 152-275 (759)
221 KOG0977 Nuclear envelope prote 90.6 12 0.00026 45.2 18.0 180 245-431 164-353 (546)
222 PF09787 Golgin_A5: Golgin sub 90.6 10 0.00022 45.6 17.7 61 360-420 252-320 (511)
223 PRK11281 hypothetical protein; 90.5 38 0.00082 44.6 23.6 54 371-424 394-453 (1113)
224 COG1579 Zn-ribbon protein, pos 90.5 14 0.00031 40.3 16.9 45 142-186 14-58 (239)
225 PF05667 DUF812: Protein of un 90.3 24 0.00052 43.3 20.5 13 476-488 544-556 (594)
226 PF15397 DUF4618: Domain of un 90.2 11 0.00024 41.5 16.0 149 263-439 62-224 (258)
227 PF10174 Cast: RIM-binding pro 90.1 47 0.001 42.1 23.2 154 251-428 330-487 (775)
228 KOG0995 Centromere-associated 89.7 56 0.0012 39.7 26.9 27 249-275 331-357 (581)
229 COG4942 Membrane-bound metallo 89.7 30 0.00065 40.7 19.7 73 138-213 38-110 (420)
230 PRK10929 putative mechanosensi 89.7 61 0.0013 42.7 24.4 54 371-424 370-429 (1109)
231 cd07627 BAR_Vps5p The Bin/Amph 89.5 30 0.00065 36.8 18.4 81 347-427 112-197 (216)
232 PF13851 GAS: Growth-arrest sp 89.4 15 0.00033 38.9 15.9 27 383-409 145-171 (201)
233 PF09789 DUF2353: Uncharacteri 89.4 44 0.00096 38.0 21.3 196 245-474 67-281 (319)
234 KOG0999 Microtubule-associated 89.4 29 0.00062 41.8 19.2 127 165-340 7-135 (772)
235 KOG0978 E3 ubiquitin ligase in 89.4 25 0.00055 43.7 19.7 37 133-171 376-412 (698)
236 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.2 8 0.00017 38.1 12.9 127 251-393 4-131 (132)
237 PLN03229 acetyl-coenzyme A car 89.0 18 0.00039 45.1 18.0 41 171-216 434-474 (762)
238 TIGR01843 type_I_hlyD type I s 88.9 9.5 0.00021 43.4 15.2 13 544-556 326-338 (423)
239 KOG0243 Kinesin-like protein [ 88.6 12 0.00025 48.2 16.5 21 255-275 474-494 (1041)
240 PRK11281 hypothetical protein; 88.6 23 0.0005 46.4 19.7 13 471-483 453-465 (1113)
241 PLN02939 transferase, transfer 88.5 25 0.00053 45.4 19.3 133 250-394 257-389 (977)
242 TIGR03007 pepcterm_ChnLen poly 88.3 27 0.00058 41.4 18.8 27 280-306 210-236 (498)
243 COG1579 Zn-ribbon protein, pos 88.1 5.5 0.00012 43.4 11.8 128 156-333 42-170 (239)
244 PF12252 SidE: Dot/Icm substra 88.1 55 0.0012 42.3 21.2 39 359-397 1287-1325(1439)
245 PF09728 Taxilin: Myosin-like 88.0 53 0.0011 37.2 22.9 122 293-424 112-234 (309)
246 PF05010 TACC: Transforming ac 87.8 20 0.00043 38.4 15.5 32 393-424 141-172 (207)
247 TIGR03017 EpsF chain length de 87.8 4.6 0.0001 46.8 11.9 39 326-364 318-356 (444)
248 PF09787 Golgin_A5: Golgin sub 87.7 61 0.0013 39.0 21.4 78 250-334 274-352 (511)
249 PF08317 Spc7: Spc7 kinetochor 87.6 7.4 0.00016 43.9 13.0 49 138-186 122-176 (325)
250 PF08317 Spc7: Spc7 kinetochor 87.6 9.7 0.00021 43.0 13.9 76 259-337 158-234 (325)
251 PF04912 Dynamitin: Dynamitin 87.6 23 0.0005 41.0 17.3 137 271-421 206-365 (388)
252 KOG0976 Rho/Rac1-interacting s 87.6 32 0.00069 43.1 18.5 50 249-298 315-368 (1265)
253 KOG0999 Microtubule-associated 87.2 12 0.00025 45.0 14.3 42 315-356 197-245 (772)
254 KOG0979 Structural maintenance 87.2 34 0.00073 43.9 19.0 215 159-399 174-389 (1072)
255 PF08288 PIGA: PIGA (GPI ancho 87.0 1.9 4.1E-05 40.2 6.4 38 638-679 48-85 (90)
256 PRK11519 tyrosine kinase; Prov 86.9 48 0.001 41.5 20.7 38 511-552 525-562 (719)
257 COG3660 Predicted nucleoside-d 86.9 39 0.00084 37.8 17.1 38 512-557 1-38 (329)
258 PF09325 Vps5: Vps5 C terminal 86.0 44 0.00095 35.2 17.1 79 347-425 132-215 (236)
259 KOG0612 Rho-associated, coiled 85.9 1.3E+02 0.0029 39.7 24.4 26 805-831 1131-1156(1317)
260 TIGR01005 eps_transp_fam exopo 85.1 14 0.0003 46.2 14.9 104 252-367 290-393 (754)
261 TIGR01000 bacteriocin_acc bact 84.8 28 0.00061 41.0 16.4 29 247-275 94-122 (457)
262 PF13514 AAA_27: AAA domain 84.7 1.5E+02 0.0032 39.2 25.1 19 348-366 852-870 (1111)
263 cd07623 BAR_SNX1_2 The Bin/Amp 84.6 62 0.0013 34.7 18.1 94 335-429 108-205 (224)
264 PF13514 AAA_27: AAA domain 84.4 1.5E+02 0.0033 39.1 25.4 42 265-306 734-775 (1111)
265 PF10186 Atg14: UV radiation r 84.1 8.3 0.00018 41.9 11.0 19 160-178 28-46 (302)
266 KOG4302 Microtubule-associated 84.1 96 0.0021 38.7 20.6 71 377-457 308-384 (660)
267 smart00787 Spc7 Spc7 kinetocho 84.1 20 0.00043 40.6 14.1 78 249-336 203-281 (312)
268 PRK09039 hypothetical protein; 83.9 32 0.00068 39.4 15.8 49 353-404 112-160 (343)
269 PRK14089 ipid-A-disaccharide s 83.8 16 0.00034 41.9 13.3 60 820-884 184-257 (347)
270 COG4942 Membrane-bound metallo 83.8 17 0.00036 42.7 13.5 53 130-182 58-110 (420)
271 KOG3156 Uncharacterized membra 83.5 5.4 0.00012 42.6 8.6 141 125-345 56-200 (220)
272 PF15619 Lebercilin: Ciliary p 83.4 37 0.0008 36.0 14.9 30 245-274 63-92 (194)
273 KOG0963 Transcription factor/C 83.4 1.2E+02 0.0027 37.3 21.4 40 155-194 127-166 (629)
274 TIGR02680 conserved hypothetic 83.2 1.9E+02 0.0041 39.2 28.6 113 166-308 276-388 (1353)
275 cd00176 SPEC Spectrin repeats, 83.0 22 0.00048 35.5 12.8 38 249-286 32-69 (213)
276 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.0 8.7 0.00019 37.8 9.5 56 249-304 58-114 (132)
277 PF06705 SF-assemblin: SF-asse 82.5 70 0.0015 34.7 17.1 155 262-431 39-193 (247)
278 COG0497 RecN ATPase involved i 82.5 71 0.0015 39.0 18.4 34 152-185 164-197 (557)
279 cd07665 BAR_SNX1 The Bin/Amphi 82.4 81 0.0018 34.4 17.6 76 348-424 131-210 (234)
280 KOG0243 Kinesin-like protein [ 82.3 1.1E+02 0.0023 40.0 20.5 19 249-267 496-514 (1041)
281 KOG0994 Extracellular matrix g 82.1 1.4E+02 0.003 39.3 20.9 58 159-216 1549-1610(1758)
282 PF09789 DUF2353: Uncharacteri 81.5 22 0.00048 40.4 13.1 123 244-366 80-212 (319)
283 PF05911 DUF869: Plant protein 81.5 39 0.00084 42.8 16.3 106 245-366 94-199 (769)
284 PF01576 Myosin_tail_1: Myosin 81.2 0.48 1E-05 60.0 0.0 60 247-306 423-486 (859)
285 PF05278 PEARLI-4: Arabidopsis 80.8 28 0.00061 38.7 13.2 136 130-307 125-261 (269)
286 COG5185 HEC1 Protein involved 80.5 37 0.0008 40.3 14.5 215 123-379 151-373 (622)
287 KOG0946 ER-Golgi vesicle-tethe 80.3 82 0.0018 39.8 17.9 101 247-347 734-858 (970)
288 cd07647 F-BAR_PSTPIP The F-BAR 80.1 55 0.0012 35.3 15.2 29 247-275 57-85 (239)
289 COG4717 Uncharacterized conser 80.0 69 0.0015 40.8 17.3 230 159-409 557-798 (984)
290 PF05483 SCP-1: Synaptonemal c 80.0 1.7E+02 0.0037 36.6 22.0 76 240-315 447-526 (786)
291 KOG4677 Golgi integral membran 79.7 74 0.0016 37.7 16.5 75 239-323 298-382 (554)
292 PF09730 BicD: Microtubule-ass 79.3 36 0.00078 42.7 14.9 91 184-299 56-146 (717)
293 KOG0018 Structural maintenance 78.9 67 0.0015 41.7 17.0 173 243-427 683-870 (1141)
294 PF15619 Lebercilin: Ciliary p 78.8 40 0.00087 35.7 13.2 29 248-276 24-52 (194)
295 PF09730 BicD: Microtubule-ass 78.0 2E+02 0.0044 36.4 22.3 52 164-216 126-182 (717)
296 KOG4438 Centromere-associated 77.9 1.5E+02 0.0034 35.0 19.8 213 127-372 95-335 (446)
297 PF12761 End3: Actin cytoskele 77.8 6.9 0.00015 41.4 7.1 62 273-334 88-151 (195)
298 PF07407 Seadorna_VP6: Seadorn 77.7 6.4 0.00014 44.3 7.2 105 249-412 31-136 (420)
299 KOG0979 Structural maintenance 77.4 1.8E+02 0.0039 37.8 20.0 41 377-420 408-448 (1072)
300 cd07664 BAR_SNX2 The Bin/Amphi 77.1 1.2E+02 0.0025 33.2 18.3 79 347-426 130-212 (234)
301 PF06008 Laminin_I: Laminin Do 77.1 1.2E+02 0.0026 33.2 19.6 66 288-353 153-219 (264)
302 PRK10884 SH3 domain-containing 76.6 5.2 0.00011 42.6 6.0 20 169-188 96-115 (206)
303 PRK10246 exonuclease subunit S 76.6 2.6E+02 0.0056 36.9 26.8 35 247-281 294-328 (1047)
304 KOG2129 Uncharacterized conser 76.5 51 0.0011 38.6 13.9 86 253-341 182-275 (552)
305 PRK10869 recombination and rep 76.4 1.9E+02 0.0042 35.3 23.1 22 385-406 345-366 (553)
306 TIGR00634 recN DNA repair prot 76.3 1E+02 0.0022 37.5 17.6 50 247-296 172-224 (563)
307 PF13524 Glyco_trans_1_2: Glyc 76.1 1.6 3.4E-05 39.2 1.8 30 860-889 1-30 (92)
308 PF04012 PspA_IM30: PspA/IM30 76.1 49 0.0011 35.0 13.2 102 291-405 26-136 (221)
309 KOG0992 Uncharacterized conser 75.9 67 0.0015 38.5 14.9 82 251-335 232-314 (613)
310 cd07596 BAR_SNX The Bin/Amphip 75.8 1E+02 0.0022 31.7 17.3 81 348-428 115-200 (218)
311 KOG1003 Actin filament-coating 75.8 25 0.00054 37.3 10.4 56 315-370 14-73 (205)
312 KOG0963 Transcription factor/C 75.6 2.1E+02 0.0046 35.4 22.2 71 323-395 253-335 (629)
313 PF11997 DUF3492: Domain of un 75.6 22 0.00048 39.2 10.7 42 512-554 1-42 (268)
314 PF04156 IncA: IncA protein; 75.4 25 0.00055 36.2 10.6 40 275-314 82-121 (191)
315 PF07106 TBPIP: Tat binding pr 75.3 6 0.00013 40.4 5.9 61 242-302 71-137 (169)
316 COG4913 Uncharacterized protei 74.8 43 0.00092 41.8 13.3 32 380-411 775-806 (1104)
317 PF13844 Glyco_transf_41: Glyc 74.5 4.4 9.5E-05 48.1 5.3 91 794-890 276-393 (468)
318 KOG0804 Cytoplasmic Zn-finger 74.3 55 0.0012 38.7 13.6 99 313-424 348-446 (493)
319 KOG0239 Kinesin (KAR3 subfamil 74.1 1.7E+02 0.0037 36.7 18.8 94 167-283 108-201 (670)
320 KOG2129 Uncharacterized conser 74.0 1.9E+02 0.0042 34.1 19.4 119 247-382 133-283 (552)
321 TIGR03017 EpsF chain length de 74.0 1.2E+02 0.0026 35.3 16.9 42 352-397 256-298 (444)
322 PRK10361 DNA recombination pro 73.8 2E+02 0.0044 34.7 18.5 26 376-401 135-160 (475)
323 PF10473 CENP-F_leu_zip: Leuci 73.6 74 0.0016 32.2 12.8 31 155-185 6-36 (140)
324 PF04156 IncA: IncA protein; 73.3 23 0.0005 36.5 9.7 18 250-267 95-112 (191)
325 COG3206 GumC Uncharacterized p 73.3 1.3E+02 0.0028 35.5 17.0 99 348-467 346-446 (458)
326 KOG1850 Myosin-like coiled-coi 72.9 1.8E+02 0.0039 33.3 23.5 64 143-214 23-86 (391)
327 smart00787 Spc7 Spc7 kinetocho 72.9 39 0.00085 38.3 12.0 54 245-301 146-199 (312)
328 PF06160 EzrA: Septation ring 72.7 2.4E+02 0.0051 34.6 23.2 170 247-420 310-486 (560)
329 PF07989 Microtub_assoc: Micro 72.2 9.2 0.0002 34.5 5.6 30 247-276 4-33 (75)
330 PF14073 Cep57_CLD: Centrosome 72.1 1.4E+02 0.0029 31.6 15.2 147 136-337 2-173 (178)
331 KOG0804 Cytoplasmic Zn-finger 72.0 26 0.00057 41.2 10.4 37 245-281 391-427 (493)
332 KOG0244 Kinesin-like protein [ 71.9 1.9E+02 0.0042 37.2 18.4 259 170-455 300-653 (913)
333 PRK09841 cryptic autophosphory 71.3 27 0.00058 43.7 11.3 71 284-364 314-384 (726)
334 PF00038 Filament: Intermediat 71.2 1.7E+02 0.0037 32.4 25.0 176 249-431 88-280 (312)
335 TIGR01000 bacteriocin_acc bact 70.3 94 0.002 36.7 15.0 20 324-343 241-260 (457)
336 COG1703 ArgK Putative periplas 70.3 1E+02 0.0022 35.2 14.2 51 494-554 38-88 (323)
337 PF11559 ADIP: Afadin- and alp 69.8 49 0.0011 33.0 10.9 42 323-366 105-149 (151)
338 PF11932 DUF3450: Protein of u 69.8 39 0.00084 36.7 10.8 26 278-303 39-64 (251)
339 COG1842 PspA Phage shock prote 69.3 96 0.0021 33.7 13.5 73 290-367 26-98 (225)
340 TIGR01010 BexC_CtrB_KpsE polys 69.1 60 0.0013 37.0 12.7 64 280-345 241-304 (362)
341 PF07798 DUF1640: Protein of u 68.0 1.5E+02 0.0033 30.6 15.7 27 249-275 72-98 (177)
342 PF04100 Vps53_N: Vps53-like, 67.7 88 0.0019 36.4 13.7 125 247-386 22-147 (383)
343 TIGR00998 8a0101 efflux pump m 67.6 73 0.0016 35.4 12.8 14 543-556 256-269 (334)
344 PF02951 GSH-S_N: Prokaryotic 67.0 6.7 0.00015 38.3 3.9 40 512-554 1-40 (119)
345 PRK10698 phage shock protein P 66.9 1.3E+02 0.0029 32.3 14.0 117 291-412 27-144 (222)
346 KOG0964 Structural maintenance 66.7 3.4E+02 0.0074 35.5 18.8 87 280-369 313-409 (1200)
347 TIGR03794 NHPM_micro_HlyD NHPM 66.6 87 0.0019 36.4 13.6 25 327-351 228-252 (421)
348 PF13851 GAS: Growth-arrest sp 66.3 1.8E+02 0.004 30.9 16.1 17 326-342 150-166 (201)
349 PF10186 Atg14: UV radiation r 66.3 57 0.0012 35.5 11.4 51 252-302 22-77 (302)
350 KOG0946 ER-Golgi vesicle-tethe 66.2 2.4E+02 0.0053 36.0 17.2 59 351-409 807-876 (970)
351 PF01975 SurE: Survival protei 66.0 7.7 0.00017 40.9 4.4 39 512-557 1-39 (196)
352 KOG2273 Membrane coat complex 65.9 2.9E+02 0.0063 33.0 18.1 97 324-420 361-463 (503)
353 PF10267 Tmemb_cc2: Predicted 65.8 25 0.00053 41.1 8.7 31 243-273 212-242 (395)
354 PF04912 Dynamitin: Dynamitin 64.9 48 0.001 38.4 10.9 147 247-395 91-260 (388)
355 cd07666 BAR_SNX7 The Bin/Amphi 64.7 2.3E+02 0.0049 31.3 15.8 67 348-424 154-221 (243)
356 PF12325 TMF_TATA_bd: TATA ele 64.0 47 0.001 32.7 9.0 51 287-337 43-93 (120)
357 PRK11519 tyrosine kinase; Prov 63.8 50 0.0011 41.4 11.6 69 286-364 316-384 (719)
358 PF15188 CCDC-167: Coiled-coil 63.2 12 0.00027 34.7 4.6 60 247-306 2-61 (85)
359 PF12325 TMF_TATA_bd: TATA ele 62.2 36 0.00078 33.5 7.9 63 245-307 25-87 (120)
360 PF09726 Macoilin: Transmembra 62.0 1.6E+02 0.0034 37.2 15.2 26 385-411 556-581 (697)
361 PF05384 DegS: Sensor protein 61.7 1E+02 0.0022 31.9 11.3 95 251-367 21-115 (159)
362 PF04111 APG6: Autophagy prote 61.7 30 0.00064 39.2 8.3 19 528-546 173-191 (314)
363 PF03033 Glyco_transf_28: Glyc 61.4 10 0.00022 36.1 4.1 27 528-554 9-35 (139)
364 PF13166 AAA_13: AAA domain 60.8 3.5E+02 0.0077 33.5 18.1 21 355-375 389-409 (712)
365 PRK10476 multidrug resistance 60.3 1.2E+02 0.0026 34.2 12.9 13 543-555 260-272 (346)
366 PF01576 Myosin_tail_1: Myosin 60.3 2.9 6.3E-05 53.2 0.0 119 282-412 708-830 (859)
367 TIGR02977 phageshock_pspA phag 60.0 1.7E+02 0.0038 31.2 13.3 105 291-400 27-132 (219)
368 PF10267 Tmemb_cc2: Predicted 60.0 65 0.0014 37.8 10.7 44 263-339 275-318 (395)
369 KOG4593 Mitotic checkpoint pro 59.4 4.6E+02 0.0099 33.1 20.9 30 314-343 167-196 (716)
370 PF08614 ATG16: Autophagy prot 58.8 26 0.00055 36.7 6.7 39 152-190 74-112 (194)
371 KOG0962 DNA repair protein RAD 58.8 6.1E+02 0.013 34.3 20.6 58 261-318 799-860 (1294)
372 KOG1962 B-cell receptor-associ 58.4 41 0.00089 36.3 8.1 33 325-360 178-210 (216)
373 TIGR03794 NHPM_micro_HlyD NHPM 58.4 3.2E+02 0.007 31.8 16.3 14 543-556 309-322 (421)
374 PF08172 CASP_C: CASP C termin 58.2 35 0.00075 37.5 7.8 107 347-463 83-218 (248)
375 COG3206 GumC Uncharacterized p 58.1 1.4E+02 0.003 35.3 13.3 41 153-193 188-229 (458)
376 PRK10869 recombination and rep 57.9 4.3E+02 0.0094 32.3 17.9 47 373-420 292-338 (553)
377 COG2433 Uncharacterized conser 57.3 16 0.00035 44.4 5.4 63 243-305 429-491 (652)
378 PHA03392 egt ecdysteroid UDP-g 57.0 15 0.00032 44.1 5.2 39 512-555 21-59 (507)
379 PRK10246 exonuclease subunit S 57.0 5.9E+02 0.013 33.6 27.6 10 206-215 493-502 (1047)
380 PRK09343 prefoldin subunit bet 56.4 64 0.0014 31.5 8.5 50 259-308 62-112 (121)
381 PF06548 Kinesin-related: Kine 56.3 2.5E+02 0.0054 33.6 14.4 87 299-397 381-471 (488)
382 KOG1050 Trehalose-6-phosphate 55.7 80 0.0017 39.9 11.2 74 805-878 275-393 (732)
383 PF00804 Syntaxin: Syntaxin; 55.2 1.6E+02 0.0035 26.5 11.8 83 327-422 15-103 (103)
384 TIGR01426 MGT glycosyltransfer 54.0 30 0.00066 39.2 6.9 74 807-885 227-315 (392)
385 KOG1937 Uncharacterized conser 53.6 4.7E+02 0.01 31.4 17.2 48 247-301 228-275 (521)
386 KOG3565 Cdc42-interacting prot 53.6 5.5E+02 0.012 32.2 19.1 114 134-280 6-120 (640)
387 cd07652 F-BAR_Rgd1 The F-BAR ( 53.5 2.3E+02 0.0051 30.6 13.1 163 247-413 62-227 (234)
388 PF04124 Dor1: Dor1-like famil 53.5 3.9E+02 0.0084 30.4 19.6 56 249-304 6-62 (338)
389 PF01442 Apolipoprotein: Apoli 53.2 2.4E+02 0.0053 28.0 19.1 9 389-397 167-175 (202)
390 KOG2072 Translation initiation 53.2 6.2E+02 0.013 32.7 22.6 91 129-219 541-652 (988)
391 PF14915 CCDC144C: CCDC144C pr 53.2 3.9E+02 0.0085 30.4 17.8 179 172-365 62-268 (305)
392 PF07083 DUF1351: Protein of u 53.1 3.2E+02 0.0069 29.3 15.7 186 262-467 20-207 (215)
393 PRK11199 tyrA bifunctional cho 52.3 1.3E+02 0.0028 34.7 11.6 26 528-553 105-130 (374)
394 PF14362 DUF4407: Domain of un 52.0 1.5E+02 0.0032 32.9 11.7 73 278-350 132-213 (301)
395 PF05911 DUF869: Plant protein 51.8 4.3E+02 0.0093 33.9 16.5 110 258-370 531-644 (769)
396 PF03999 MAP65_ASE1: Microtubu 51.8 12 0.00026 46.0 3.3 158 242-411 141-316 (619)
397 PF04012 PspA_IM30: PspA/IM30 50.8 2.6E+02 0.0056 29.6 12.8 85 260-346 26-118 (221)
398 PRK05771 V-type ATP synthase s 50.8 1.3E+02 0.0028 37.3 11.9 31 159-189 93-123 (646)
399 PF07106 TBPIP: Tat binding pr 50.7 50 0.0011 33.7 7.1 54 279-333 84-137 (169)
400 TIGR01010 BexC_CtrB_KpsE polys 50.6 1.5E+02 0.0033 33.7 11.8 139 279-420 168-311 (362)
401 PRK05771 V-type ATP synthase s 50.5 78 0.0017 39.1 10.0 105 361-479 192-299 (646)
402 PF09744 Jnk-SapK_ap_N: JNK_SA 50.3 2.4E+02 0.0052 29.1 11.8 75 247-337 33-107 (158)
403 KOG3850 Predicted membrane pro 50.3 2.6E+02 0.0057 32.8 13.1 134 158-349 266-403 (455)
404 cd00176 SPEC Spectrin repeats, 49.7 2.7E+02 0.0059 27.6 15.5 17 265-281 31-47 (213)
405 PF08687 ASD2: Apx/Shroom doma 49.5 4.2E+02 0.0091 29.7 16.4 149 245-417 95-259 (264)
406 PF02350 Epimerase_2: UDP-N-ac 49.5 2E+02 0.0043 32.9 12.4 68 819-892 197-290 (346)
407 KOG1103 Predicted coiled-coil 48.6 4.7E+02 0.01 30.4 14.5 251 121-410 2-281 (561)
408 PF13747 DUF4164: Domain of un 48.5 1.9E+02 0.004 27.1 9.8 52 353-404 11-62 (89)
409 PRK00207 sulfur transfer compl 48.3 36 0.00078 33.5 5.4 39 512-553 1-40 (128)
410 KOG3958 Putative dynamitin [Cy 48.1 4.7E+02 0.01 29.8 19.8 80 129-215 56-143 (371)
411 COG4671 Predicted glycosyl tra 48.1 1.3E+02 0.0028 35.0 10.3 40 510-553 8-49 (400)
412 COG1817 Uncharacterized protei 47.9 4.9E+02 0.011 30.0 19.7 39 512-557 1-39 (346)
413 KOG4687 Uncharacterized coiled 47.9 3.3E+02 0.0071 30.6 12.9 153 247-416 87-256 (389)
414 COG4913 Uncharacterized protei 47.7 7.1E+02 0.015 31.8 19.7 75 475-554 975-1059(1104)
415 cd07651 F-BAR_PombeCdc15_like 47.5 3.9E+02 0.0084 28.7 15.7 52 247-298 57-110 (236)
416 PRK03598 putative efflux pump 47.4 2.1E+02 0.0046 32.0 12.1 16 541-556 253-268 (331)
417 PRK00286 xseA exodeoxyribonucl 46.9 2.3E+02 0.005 33.3 12.7 85 327-424 306-390 (438)
418 cd07630 BAR_SNX_like The Bin/A 46.9 3.8E+02 0.0083 28.5 17.6 49 384-432 135-184 (198)
419 PF05278 PEARLI-4: Arabidopsis 46.3 2.1E+02 0.0045 32.1 11.3 148 143-332 112-262 (269)
420 PF01920 Prefoldin_2: Prefoldi 46.0 72 0.0016 29.4 6.8 47 260-306 54-101 (106)
421 PRK10884 SH3 domain-containing 45.9 3.5E+02 0.0075 29.1 12.7 33 270-302 82-114 (206)
422 PF03962 Mnd1: Mnd1 family; I 45.8 1.7E+02 0.0036 30.9 10.2 30 348-379 108-137 (188)
423 KOG0962 DNA repair protein RAD 45.4 9.5E+02 0.021 32.6 23.0 11 133-143 693-703 (1294)
424 KOG4572 Predicted DNA-binding 45.4 8E+02 0.017 31.7 21.0 94 196-303 1084-1190(1424)
425 KOG1853 LIS1-interacting prote 45.4 4.8E+02 0.01 29.1 17.4 173 250-444 13-197 (333)
426 PF08172 CASP_C: CASP C termin 45.3 78 0.0017 34.9 7.9 31 315-345 117-147 (248)
427 PF07111 HCR: Alpha helical co 44.9 7.6E+02 0.016 31.3 21.9 52 380-431 386-437 (739)
428 KOG4603 TBP-1 interacting prot 44.6 1.2E+02 0.0026 31.8 8.5 94 249-362 78-171 (201)
429 PF14193 DUF4315: Domain of un 44.2 75 0.0016 29.5 6.4 60 358-427 2-62 (83)
430 TIGR01915 npdG NADPH-dependent 43.9 30 0.00064 36.5 4.4 26 528-553 7-32 (219)
431 PF04849 HAP1_N: HAP1 N-termin 43.7 2.3E+02 0.005 32.3 11.4 70 201-274 171-244 (306)
432 PLN02166 dTDP-glucose 4,6-dehy 43.7 32 0.00069 40.4 5.0 36 508-553 117-152 (436)
433 PRK10361 DNA recombination pro 43.6 5.4E+02 0.012 31.2 14.9 46 383-431 120-165 (475)
434 cd07667 BAR_SNX30 The Bin/Amph 43.5 4.9E+02 0.011 28.7 17.0 45 384-428 177-222 (240)
435 TIGR02338 gimC_beta prefoldin, 43.4 1.2E+02 0.0026 28.9 8.1 46 260-305 59-105 (110)
436 PLN02778 3,5-epimerase/4-reduc 43.3 35 0.00076 37.6 5.1 36 506-551 4-39 (298)
437 PF08580 KAR9: Yeast cortical 43.3 3.4E+02 0.0074 34.2 13.9 207 125-382 159-376 (683)
438 KOG1029 Endocytic adaptor prot 43.1 8.5E+02 0.018 31.4 22.3 29 131-162 312-340 (1118)
439 KOG0239 Kinesin (KAR3 subfamil 42.9 7.1E+02 0.015 31.5 16.5 29 466-495 301-329 (670)
440 KOG0993 Rab5 GTPase effector R 42.9 6.5E+02 0.014 30.0 19.8 42 157-198 146-187 (542)
441 PF06008 Laminin_I: Laminin Do 42.8 4.8E+02 0.011 28.5 23.1 72 353-424 188-259 (264)
442 PF09602 PhaP_Bmeg: Polyhydrox 42.5 4.2E+02 0.0091 27.7 12.1 95 323-429 12-108 (165)
443 PF06548 Kinesin-related: Kine 42.3 6.5E+02 0.014 30.3 14.9 23 343-365 448-470 (488)
444 PF07334 IFP_35_N: Interferon- 41.9 18 0.00039 32.9 2.0 27 252-278 2-28 (76)
445 KOG1854 Mitochondrial inner me 41.8 8.1E+02 0.017 30.7 21.9 104 134-258 150-266 (657)
446 PF06248 Zw10: Centromere/kine 41.7 3.5E+02 0.0076 33.1 13.6 23 167-189 8-30 (593)
447 PF11932 DUF3450: Protein of u 41.7 3.5E+02 0.0076 29.4 12.3 8 639-646 236-243 (251)
448 PF09304 Cortex-I_coil: Cortex 41.5 2.8E+02 0.006 27.1 9.9 21 348-368 56-76 (107)
449 PF10168 Nup88: Nuclear pore c 41.3 6.6E+02 0.014 32.0 16.0 30 279-308 563-592 (717)
450 COG3914 Spy Predicted O-linked 41.1 52 0.0011 40.2 6.2 90 794-889 421-539 (620)
451 PF03915 AIP3: Actin interacti 40.9 6E+02 0.013 30.3 14.7 158 244-427 152-313 (424)
452 PF02403 Seryl_tRNA_N: Seryl-t 40.6 43 0.00094 31.5 4.6 96 197-304 2-97 (108)
453 PF04899 MbeD_MobD: MbeD/MobD 40.6 97 0.0021 27.9 6.4 60 293-368 8-67 (70)
454 PF02994 Transposase_22: L1 tr 40.5 46 0.00099 38.5 5.6 19 356-374 178-196 (370)
455 PF06248 Zw10: Centromere/kine 40.4 1.4E+02 0.0031 36.5 10.0 73 313-387 40-113 (593)
456 PF11802 CENP-K: Centromere-as 40.2 72 0.0016 35.5 6.7 144 162-309 19-168 (268)
457 COG4026 Uncharacterized protei 39.9 1.4E+02 0.003 32.6 8.4 92 258-379 129-223 (290)
458 PF03358 FMN_red: NADPH-depend 39.9 57 0.0012 31.8 5.5 40 512-554 1-40 (152)
459 PF10146 zf-C4H2: Zinc finger- 39.7 1.8E+02 0.0038 31.8 9.5 84 268-365 19-103 (230)
460 PF08537 NBP1: Fungal Nap bind 39.7 2.5E+02 0.0054 32.2 10.8 51 133-187 85-137 (323)
461 PF06005 DUF904: Protein of un 39.7 1.8E+02 0.004 26.2 8.0 56 337-398 8-63 (72)
462 smart00806 AIP3 Actin interact 39.6 7.3E+02 0.016 29.6 16.3 208 168-397 80-312 (426)
463 PF08429 PLU-1: PLU-1-like pro 39.3 6E+02 0.013 28.5 14.6 53 326-378 250-302 (335)
464 PF07246 Phlebovirus_NSM: Phle 39.2 45 0.00097 37.0 4.9 28 249-276 215-242 (264)
465 cd07624 BAR_SNX7_30 The Bin/Am 38.7 4.9E+02 0.011 27.4 15.5 50 244-303 8-57 (200)
466 PF07464 ApoLp-III: Apolipopho 38.5 1.6E+02 0.0035 30.2 8.5 70 348-426 79-149 (155)
467 KOG1937 Uncharacterized conser 38.4 7.9E+02 0.017 29.7 22.4 80 131-215 293-377 (521)
468 KOG4360 Uncharacterized coiled 38.3 1.2E+02 0.0026 36.6 8.4 30 287-316 274-303 (596)
469 COG4550 Predicted membrane pro 38.1 3.1E+02 0.0067 27.1 9.7 92 324-427 7-105 (120)
470 PF05659 RPW8: Arabidopsis bro 37.7 1.1E+02 0.0024 31.0 7.2 75 293-367 32-111 (147)
471 PF04111 APG6: Autophagy prote 37.6 1.6E+02 0.0035 33.4 9.2 33 247-279 103-135 (314)
472 PF09738 DUF2051: Double stran 37.5 2.5E+02 0.0055 31.9 10.6 166 139-314 97-302 (302)
473 PF13870 DUF4201: Domain of un 37.4 4.7E+02 0.01 26.8 12.6 37 249-285 5-41 (177)
474 PF08702 Fib_alpha: Fibrinogen 37.4 4.6E+02 0.0099 26.6 11.4 70 324-397 55-127 (146)
475 PF05325 DUF730: Protein of un 37.4 51 0.0011 31.3 4.3 48 247-297 68-115 (122)
476 KOG4403 Cell surface glycoprot 37.3 1.8E+02 0.0039 34.5 9.4 54 278-331 365-426 (575)
477 KOG4809 Rab6 GTPase-interactin 37.3 8.9E+02 0.019 29.9 18.6 139 144-324 312-457 (654)
478 PF04977 DivIC: Septum formati 37.2 41 0.00089 29.4 3.6 47 247-293 21-67 (80)
479 PF04420 CHD5: CHD5-like prote 37.2 52 0.0011 33.7 4.8 57 253-309 36-94 (161)
480 PF03980 Nnf1: Nnf1 ; InterPr 37.1 1.5E+02 0.0033 28.0 7.7 86 154-271 16-108 (109)
481 KOG4593 Mitotic checkpoint pro 36.9 9.8E+02 0.021 30.3 26.4 60 129-192 177-236 (716)
482 COG3879 Uncharacterized protei 36.7 87 0.0019 34.5 6.5 55 169-230 67-121 (247)
483 COG1269 NtpI Archaeal/vacuolar 36.6 1.1E+02 0.0024 38.1 8.4 145 279-424 111-272 (660)
484 PLN03188 kinesin-12 family pro 36.6 4.5E+02 0.0098 35.3 13.7 155 145-363 1062-1238(1320)
485 PLN00016 RNA-binding protein; 36.6 35 0.00076 38.8 3.8 39 510-554 51-89 (378)
486 KOG3478 Prefoldin subunit 6, K 36.6 2.7E+02 0.0058 27.4 9.0 99 158-314 11-109 (120)
487 PF13949 ALIX_LYPXL_bnd: ALIX 36.3 6.1E+02 0.013 27.7 22.0 50 259-308 79-132 (296)
488 COG3883 Uncharacterized protei 36.2 4.6E+02 0.01 29.4 12.0 50 160-209 60-110 (265)
489 PRK13411 molecular chaperone D 35.9 1.6E+02 0.0034 36.7 9.5 41 264-304 505-545 (653)
490 PF15188 CCDC-167: Coiled-coil 35.9 38 0.00081 31.6 3.1 64 172-260 4-67 (85)
491 PF06818 Fez1: Fez1; InterPro 35.8 5.9E+02 0.013 27.5 14.1 13 173-185 10-22 (202)
492 PF06564 YhjQ: YhjQ protein; 35.7 56 0.0012 35.8 5.0 36 512-551 1-36 (243)
493 KOG2398 Predicted proline-seri 35.6 9.8E+02 0.021 30.0 16.5 95 321-420 108-207 (611)
494 cd00632 Prefoldin_beta Prefold 35.4 3.5E+02 0.0077 25.5 9.8 94 326-428 6-99 (105)
495 TIGR02195 heptsyl_trn_II lipop 35.1 97 0.0021 34.4 7.0 72 790-864 161-258 (334)
496 COG1382 GimC Prefoldin, chaper 35.0 2.3E+02 0.005 28.1 8.5 52 259-310 61-113 (119)
497 PF06258 Mito_fiss_Elm1: Mitoc 34.9 2.7E+02 0.0059 31.5 10.5 74 807-890 184-259 (311)
498 KOG4603 TBP-1 interacting prot 34.8 3.8E+02 0.0083 28.3 10.3 41 245-285 118-158 (201)
499 PF04880 NUDE_C: NUDE protein, 34.8 47 0.001 34.5 4.0 51 133-197 2-53 (166)
500 CHL00194 ycf39 Ycf39; Provisio 34.4 49 0.0011 36.5 4.5 27 528-554 7-33 (317)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.9e-204 Score=1803.02 Aligned_cols=852 Identities=66% Similarity=1.034 Sum_probs=783.0
Q ss_pred CCcccccccccCcceeecccCCCCcCCccccccccccccccccccccccCCCchhHHhhhcccCCCCCCCCCCCCCccCC
Q 002628 1 MASKISTSFISPFVIHFNCKNSNNKNKHLNVPLLFSSRRLLPASCKMRQRSFGSQQKRQHVKKGSPDQQRPNDADLVPTS 80 (899)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~k~~~~k~~~~~~~~~~~~~~~~~~ 80 (899)
||.+-++||++|||+++.| +.+||+|+||++|+||+||||+|||||||||+|+++|+| ||+|++||+|+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 69 (977)
T PLN02939 1 AAAAESAALLSHGCGPIRS----------RAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQ-RSSNSKLQSNT 69 (977)
T ss_pred CchhhhhhHhhcccccccc----------CCCCCCchhccccccccccCCCchhhhhhhhccCCCCcc-cccccccccCc
Confidence 5778899999999999954 668999999999999999999999999999999999998 99999999999
Q ss_pred CCCCcccccccCC--CCC-Ccccccccccc-cccccccccccc----cccCCCccccccchhHHHHHHHhhhhhHHHHHH
Q 002628 81 DGDSESESSLIDR--EPI-DVEHTEEQNLG-SVFVPELKESLV----LNCDGGEELSTSQLDNLISMIRNAEKNILLLNE 152 (899)
Q Consensus 81 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (899)
|||+|+||++.++ +.| +.|+.+.+.+. +...++.+.+.. -+..+|+|+|++|||||+|||||||||||||||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (977)
T PLN02939 70 DENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQ 149 (977)
T ss_pred cccccccccccccccccccCCCCccccccchhhcchhhhccccHhhhhccccccccccccHHHHHHHHHHHHhhhHhHHH
Confidence 9999999999986 444 44554444443 223334333332 367889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCC
Q 002628 153 ARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNE 232 (899)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (899)
||++||+||+|||+|||+||||||||||||||||+|+|+++|+++||||+|+|||||||||+++++++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (977)
T PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGL---------- 219 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhcccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh
Q 002628 233 PANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA 312 (899)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (899)
.+|+|++||++||+|||+||+||++||++|++|++|+||+++|||||++|+++|+|||+||++||+||+
T Consensus 220 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (977)
T PLN02939 220 -----------CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS 288 (977)
T ss_pred -----------ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHH
Q 002628 313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (899)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (899)
||+||++|| |||||||||+||++||||+|+|++||+||||||+|||+||+||+|||+||+||+++ ++||||+|+
T Consensus 289 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 362 (977)
T PLN02939 289 KLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV----ELLQQKLKL 362 (977)
T ss_pred hccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHH----HHHHHHHHH
Confidence 999999998 99999999999999999999999999999999999999999999999999999977 999999999
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccChHHHHHHHH
Q 002628 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLRE 472 (899)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~~a~~l~~ 472 (899)
+|||+|+||+||+||+++|++||++||++|++|++|++|++.++|+++|||+|||+||||||+|+|+++|+++||+.||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~ 442 (977)
T PLN02939 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLRE 442 (977)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhhhhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 002628 473 MVWKRNGRIRDAYMECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (899)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVIt 552 (899)
|||+|+.+++++|++|++++|+++++++++|++++++++|||+||++|++|++++||+|+|++.|+++|+++||+|.||+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIl 522 (977)
T PLN02939 443 MVWKRDGRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVL 522 (977)
T ss_pred HHHhhhhhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHH
Q 002628 553 PKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALE 632 (899)
Q Consensus 553 P~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAale 632 (899)
|.|++.....+..++.....+..+++|..+.++||.+.++||++|||+++||+.||+|+.+|+++|++.||+|||+++++
T Consensus 523 P~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe 602 (977)
T PLN02939 523 PKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALE 602 (977)
T ss_pred CCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99998865444444433334444567766678999999999999999987776689999999999999999999999999
Q ss_pred HHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccc
Q 002628 633 LLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAH 712 (899)
Q Consensus 633 lLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~ 712 (899)
++.+.+++|||||||||++++++|+|+..|+..++.++|+|+||||+.|||.++...+..||+++..++++++++++ ++
T Consensus 603 ~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~ 681 (977)
T PLN02939 603 LLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AH 681 (977)
T ss_pred HHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cC
Confidence 99988899999999999999998999877766566789999999999999999888787899999888778888755 67
Q ss_pred cchhhhhHHhhhccEEEEeChhhHHh----hccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhh
Q 002628 713 DRINPLKGAIVFSNIVTTVSPSYAQE----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 788 (899)
Q Consensus 713 ~~in~lK~ai~~AD~VItVS~sya~e----~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~ 788 (899)
+++|++++++.+||.|+||||+|+++ +|+||+.++..+..++++|+||||++.|+|.+|++++.+|+++++.||..
T Consensus 682 ~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~ 761 (977)
T PLN02939 682 GRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAA 761 (977)
T ss_pred CchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhh
Confidence 89999999999999999999999998 67889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhccCcEEEEEcCCCccCc----c---H----------
Q 002628 789 NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHI----Q---V---------- 851 (899)
Q Consensus 789 ~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~~L----q---k---------- 851 (899)
||.++|+++|++..+++.|+|+||||++++||++++++|+..+.+.+++|+|+|+|+.+.+ . .
T Consensus 762 nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~F 841 (977)
T PLN02939 762 NKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRL 841 (977)
T ss_pred hhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999984234679999999999999999999999988777899999999975311 1 0
Q ss_pred ------H---HHHHhcCeeEEcCCcCcChHHHHHHccCC-cccccCCCcc
Q 002628 852 ------Y---PILLSSFSFLRKHIFNICNLYIKLGQGGD-LTVNNNCEPW 891 (899)
Q Consensus 852 ------e---~iyaaADIfVlPS~~EpFGLV~LEAMg~g-l~Vidgv~~~ 891 (899)
. .+|++||+||+||++||||+|+||||++| +||...++|.
T Consensus 842 lG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL 891 (977)
T PLN02939 842 ILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGL 891 (977)
T ss_pred EeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCC
Confidence 0 69999999999999999999999999999 4555555554
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.1e-56 Score=512.94 Aligned_cols=366 Identities=32% Similarity=0.513 Sum_probs=297.0
Q ss_pred CCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeee
Q 002628 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (899)
Q Consensus 509 ~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~ 588 (899)
|++|||+||++|++|++++||+|+++..|.++|+++||+|.||+|.|++.... ...+... ..+..++.+ .+++|.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~ 75 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQV-HSFPDLFGG---PARLLA 75 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceEE-EEEeeeCCc---eEEEEE
Confidence 46799999999999999999999999999999999999999999999987421 1122111 111111222 357888
Q ss_pred eeeCCeeEEEeCCCCCCcccccCC-CCC------CCcchhhHHHHHHHHHHHHHHh--CCCceEEEECCCchhhHHHHHH
Q 002628 589 STIEGLPVYFIEPHHPDKFFWRGQ-FYG------EHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYW 659 (899)
Q Consensus 589 ~~veGV~V~~L~~~~p~~~F~r~~-iYg------~~Dd~~R~s~FsrAalelLrq~--~~kPDIIH~Hdw~talVapl~~ 659 (899)
...+||++||++.++ ||.|+. +|+ +.|+..||++||++++++++.. +++|||||||+|+++++ |.++
T Consensus 76 ~~~~~v~~~~~~~~~---~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~-~~~l 151 (485)
T PRK14099 76 ARAGGLDLFVLDAPH---LYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLA-PAYL 151 (485)
T ss_pred EEeCCceEEEEeChH---hhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHH-HHHH
Confidence 888999999998543 787764 673 4589999999999999988753 57999999999999998 5555
Q ss_pred HhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-
Q 002628 660 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE- 738 (899)
Q Consensus 660 ~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e- 738 (899)
.. . ...++|+|+|+||+.|+|.++...+..+|+++..+. ++.++ +++.+|+++.++.+||.|+|||+.++++
T Consensus 152 ~~-~--~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~i~~ad~vitVS~~~a~ei 224 (485)
T PRK14099 152 HY-S--GRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFS-LDGVE---YYGGIGYLKAGLQLADRITTVSPTYALEI 224 (485)
T ss_pred Hh-C--CCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcC-chhhh---hCCCccHHHHHHHhcCeeeecChhHHHHH
Confidence 42 1 124689999999999999888777777888765542 23333 5677889999999999999999999987
Q ss_pred ----hccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEec
Q 002628 739 ----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITR 814 (899)
Q Consensus 739 ----~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGR 814 (899)
++.|++.++..+..++.+|+||||++.|+|.+++.++.+|+.+++++|..+|.++|+++|++. +++.++|++|||
T Consensus 225 ~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~li~~VgR 303 (485)
T PRK14099 225 QGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDP-DPDALLLGVISR 303 (485)
T ss_pred hcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCc-ccCCcEEEEEec
Confidence 245777777777899999999999999999999999999999999999999999999999973 446789999999
Q ss_pred CCCccCHHHHHHHHHHhhccCcEEEEEcCCCcc---Ccc-----------------HH--H-HHHhcCeeEEcCCcCcCh
Q 002628 815 LVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQ-----------------VY--P-ILLSSFSFLRKHIFNICN 871 (899)
Q Consensus 815 L~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~---~Lq-----------------ke--~-iyaaADIfVlPS~~EpFG 871 (899)
|+++||+++|++|+..+.+.+++|+|+|+|+.. .++ .+ . ++++||+||+||++||||
T Consensus 304 L~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fG 383 (485)
T PRK14099 304 LSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCG 383 (485)
T ss_pred CCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCc
Confidence 999999999999999988778999999998631 111 11 4 457899999999999999
Q ss_pred HHHHHHccCC-cccccCCCcc
Q 002628 872 LYIKLGQGGD-LTVNNNCEPW 891 (899)
Q Consensus 872 LV~LEAMg~g-l~Vidgv~~~ 891 (899)
+++||||++| +||+..++|.
T Consensus 384 l~~lEAma~G~ppVvs~~GGl 404 (485)
T PRK14099 384 LTQLCALRYGAVPVVARVGGL 404 (485)
T ss_pred HHHHHHHHCCCCcEEeCCCCc
Confidence 9999999999 5777665554
No 3
>PLN02316 synthase/transferase
Probab=100.00 E-value=6.7e-56 Score=537.66 Aligned_cols=401 Identities=44% Similarity=0.707 Sum_probs=311.6
Q ss_pred CChHHHHHHHHHhhhhhhhc-------ccChHHHHHHHHHHHhcCCCchhhhhh---hhhhhhhhhHHhhhhc-------
Q 002628 441 MPWEFWSRLLLIIDGWLLEK-------KLSTSEAKLLREMVWKRNGRIRDAYME---CKEKNEHEAISTFLKL------- 503 (899)
Q Consensus 441 ~~~~~~~~lll~~d~~~~~~-------~~~~~~a~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------- 503 (899)
..+|+|.+.- +++|+... |...+++..+. -.-..+.|||++ +++..+....++..++
T Consensus 506 ~~~ev~~~g~--~NrWth~~~~~~~~~m~~~~~g~~~~----a~v~vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v~ 579 (1036)
T PLN02316 506 GKPEVWFRGS--FNRWTHRLGPLPPQKMVPADNGSHLK----ATVKVPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPVF 579 (1036)
T ss_pred CCceEEEEcc--ccCcCCCCCCCCceeeeecCCCceEE----EEEEccccceEEEEEEecCCCCCCcCCCCCcCCccccc
Confidence 4568888777 57886542 33333331111 112345668876 3344455566665555
Q ss_pred cCCCCCCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCcccc
Q 002628 504 TSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFK 583 (899)
Q Consensus 504 ~~~~~~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~ 583 (899)
.+..+.+||||+||++|++|++++||+|++|..|+++|+++||+|+||+|.|++.....+..+.. . ..+..+. ..
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~---~-~~~~~~~-~~ 654 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHY---Q-RSYSWGG-TE 654 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceE---E-EEeccCC-EE
Confidence 25566788999999999999999999999999999999999999999999999864332222211 0 1111222 24
Q ss_pred ceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhc
Q 002628 584 NKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYV 663 (899)
Q Consensus 584 ~~V~~~~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya 663 (899)
++||.+.++|+++|||++++ .+|.++.+|+++|++.||.+||+++++++++.+++|||||||+|++++++.+++..|.
T Consensus 655 ~~v~~~~~~GV~vyfl~~~~--~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~ 732 (1036)
T PLN02316 655 IKVWFGKVEGLSVYFLEPQN--GMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYA 732 (1036)
T ss_pred EEEEEEEECCcEEEEEeccc--cccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhh
Confidence 67899999999999998642 4788888999999999999999999999998888999999999999998655555454
Q ss_pred cCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhh-ccc
Q 002628 664 PKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-GQG 742 (899)
Q Consensus 664 ~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g~G 742 (899)
..++.++|+|+|+||+.|++ +.++.++.+||.|||||+.|+++. +.
T Consensus 733 ~~~~~~~p~V~TiHnl~~~~--------------------------------n~lk~~l~~AD~ViTVS~tya~EI~~~- 779 (1036)
T PLN02316 733 HYGLSKARVVFTIHNLEFGA--------------------------------NHIGKAMAYADKATTVSPTYSREVSGN- 779 (1036)
T ss_pred hhccCCCCEEEEeCCcccch--------------------------------hHHHHHHHHCCEEEeCCHHHHHHHHhc-
Confidence 33456799999999876432 124567889999999999999871 21
Q ss_pred cccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccc-cchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCH
Q 002628 743 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDL-QGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGV 821 (899)
Q Consensus 743 L~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl-~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGv 821 (899)
..+..+..|+++||||||++.|+|.++++++.+|+++++ .||..++..+|+++|++. ++.|+|+|||||+++||+
T Consensus 780 --~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~--~d~plVg~VGRL~~qKGv 855 (1036)
T PLN02316 780 --SAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQ--ADLPLVGIITRLTHQKGI 855 (1036)
T ss_pred --cCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCc--ccCeEEEEEeccccccCH
Confidence 123334689999999999999999999999999999875 699999999999999983 467999999999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEcCCCccCc-------cH------------------H---HHHHhcCeeEEcCCcCcChHH
Q 002628 822 HLIRHAIYRTLELGGQFILLGSSPVPHI-------QV------------------Y---PILLSSFSFLRKHIFNICNLY 873 (899)
Q Consensus 822 dlLIeAi~~Lle~dvqLVIVG~Gp~~~L-------qk------------------e---~iyaaADIfVlPS~~EpFGLV 873 (899)
++|++|+..+++.+++|+|+|+||.+.+ .. . .+|++||+||+||++||||++
T Consensus 856 dlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLv 935 (1036)
T PLN02316 856 HLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLT 935 (1036)
T ss_pred HHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHH
Confidence 9999999998877899999999975311 00 0 699999999999999999999
Q ss_pred HHHHccCCc-ccccCCCcc
Q 002628 874 IKLGQGGDL-TVNNNCEPW 891 (899)
Q Consensus 874 ~LEAMg~gl-~Vidgv~~~ 891 (899)
+||||++|+ ||...++|.
T Consensus 936 qLEAMa~GtppVvs~vGGL 954 (1036)
T PLN02316 936 QLTAMRYGSIPVVRKTGGL 954 (1036)
T ss_pred HHHHHHcCCCeEEEcCCCc
Confidence 999999994 556655554
No 4
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.2e-55 Score=508.69 Aligned_cols=369 Identities=28% Similarity=0.477 Sum_probs=290.5
Q ss_pred CCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc--ccc---ccccceeeeeccCCcccc
Q 002628 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDD---LRALDVVVESYFDGRLFK 583 (899)
Q Consensus 509 ~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~--v~~---L~~l~v~v~syfdG~~~~ 583 (899)
+++|||+||++|++|++++||+|+++..|+++|+++||+|.||+|.|++..... ... +..+++.+ .+....
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 78 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPL----KEKTDL 78 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEee----cCeeEE
Confidence 456999999999999999999999999999999999999999999999875320 111 11111111 111111
Q ss_pred ceeeeeee--CCeeEEEeCCCCCCcccccCCCCCC-------CcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhH
Q 002628 584 NKVWVSTI--EGLPVYFIEPHHPDKFFWRGQFYGE-------HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFV 654 (899)
Q Consensus 584 ~~V~~~~v--eGV~V~~L~~~~p~~~F~r~~iYg~-------~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talV 654 (899)
..++.... .|+++||++++ .||.|+.+|+. .|+..||++|++++++++++.+++|||||||+|+++++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~---~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~ 155 (489)
T PRK14098 79 LHVKVTALPSSKIQTYFLYNE---KYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLV 155 (489)
T ss_pred EEEEEecccCCCceEEEEeCH---HHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHH
Confidence 11221222 36999999853 38999888964 48999999999999999987778999999999999998
Q ss_pred HHHHHHhhcc-CCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeCh
Q 002628 655 APLYWDLYVP-KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSP 733 (899)
Q Consensus 655 apl~~~~ya~-~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~ 733 (899)
+.++...+.. ..+.++|+|+|+||+.+||.++...+... ++...+ +.+. .+++.+|+++.++.+||.|||||+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~---~~~~--~~~~~~n~lk~~i~~ad~VitVS~ 229 (489)
T PRK14098 156 PLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVC---SGLH--REGDEVNMLYTGVEHADLLTTTSP 229 (489)
T ss_pred HHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhh---hhhh--hcCCcccHHHHHHHhcCcceeeCH
Confidence 5444333321 12457999999999999998766544322 332221 1111 134678999999999999999999
Q ss_pred hhHHh------hccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCc
Q 002628 734 SYAQE------GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKP 807 (899)
Q Consensus 734 sya~e------~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kp 807 (899)
.|+++ +++|+..++..+..++++|+||||++.|+|.+++.++.+|+.+++++|..+|..+++++|++. +++.|
T Consensus 230 ~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~-~~~~~ 308 (489)
T PRK14098 230 RYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPF-DEETP 308 (489)
T ss_pred HHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCC-ccCCC
Confidence 99987 245777777777899999999999999999999899999999999999999999999999984 56789
Q ss_pred EEEEEecCCCccCHHHHHHHHHHhhccCcEEEEEcCCCcc---CccH-----------------H---HHHHhcCeeEEc
Q 002628 808 LVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQV-----------------Y---PILLSSFSFLRK 864 (899)
Q Consensus 808 LVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~---~Lqk-----------------e---~iyaaADIfVlP 864 (899)
+|+|+||++++||++++++|+..+.+.+++|+|+|+|+.. .++. . .+|++||+||+|
T Consensus 309 ~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~P 388 (489)
T PRK14098 309 LVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMP 388 (489)
T ss_pred EEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeC
Confidence 9999999999999999999999998778999999999742 1111 0 899999999999
Q ss_pred CCcCcChHHHHHHccCCc-ccccCCCcc
Q 002628 865 HIFNICNLYIKLGQGGDL-TVNNNCEPW 891 (899)
Q Consensus 865 S~~EpFGLV~LEAMg~gl-~Vidgv~~~ 891 (899)
|.+||||+++||||++|+ ||...++|.
T Consensus 389 S~~E~~Gl~~lEAma~G~ppVv~~~GGl 416 (489)
T PRK14098 389 GKIESCGMLQMFAMSYGTIPVAYAGGGI 416 (489)
T ss_pred CCCCCchHHHHHHHhCCCCeEEecCCCC
Confidence 999999999999999995 555555554
No 5
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=4.9e-54 Score=490.51 Aligned_cols=367 Identities=43% Similarity=0.667 Sum_probs=297.9
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||+||++|++|++++||+|+++.+|+++|+++||+|+|++|.|++...... ...........++.|..+.+++|...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVD-DQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhc-cCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 8999999999999999999999999999999999999999999998643211 111111112223456667789999999
Q ss_pred CCeeEEEeCCCCCCcccccC-CCCC--CCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 002628 592 EGLPVYFIEPHHPDKFFWRG-QFYG--EHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~-~iYg--~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~ 668 (899)
+|+++|+++++. +|.++ .+|+ +.|++.|+.+|++++++++++.+.+|||||+|+|++++++.++...+. ..
T Consensus 80 ~~v~~~~i~~~~---~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~---~~ 153 (473)
T TIGR02095 80 EGVPVYFIDNPS---LFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYR---PN 153 (473)
T ss_pred CCceEEEEECHH---HcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhcc---CC
Confidence 999999998642 67764 4888 678999999999999999988778999999999999998544333221 11
Q ss_pred CCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-----hcccc
Q 002628 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQGL 743 (899)
Q Consensus 669 giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e-----~g~GL 743 (899)
++|+|+|+|++.++|.++...+..+|++...+. ...+. +++++++++.++.+||.|+|||+.++++ +++|+
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l 229 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFH-MEGLE---FYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGL 229 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcC-chhhh---cCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccc
Confidence 489999999999999887766666677654332 12222 4567899999999999999999999987 35567
Q ss_pred ccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHH
Q 002628 744 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHL 823 (899)
Q Consensus 744 ~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdl 823 (899)
+.++..+..++.+|+||||++.|+|.+++.++.+|+++++.+|..+|..+|+++|++. +++.|+|+|+||++++||+++
T Consensus 230 ~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~~i~~vGrl~~~Kg~~~ 308 (473)
T TIGR02095 230 DGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPV-DDDVPLFGVISRLTQQKGVDL 308 (473)
T ss_pred hhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCc-cCCCCEEEEEecCccccChHH
Confidence 6666667889999999999999999988899999999989999999999999999983 447899999999999999999
Q ss_pred HHHHHHHhhccCcEEEEEcCCCcc---Ccc---H--------------H---HHHHhcCeeEEcCCcCcChHHHHHHccC
Q 002628 824 IRHAIYRTLELGGQFILLGSSPVP---HIQ---V--------------Y---PILLSSFSFLRKHIFNICNLYIKLGQGG 880 (899)
Q Consensus 824 LIeAi~~Lle~dvqLVIVG~Gp~~---~Lq---k--------------e---~iyaaADIfVlPS~~EpFGLV~LEAMg~ 880 (899)
+++|+.++.+.+++|+|+|+|+.. .+. . + .+|++||+|++||.+||||++++|||++
T Consensus 309 li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~ 388 (473)
T TIGR02095 309 LLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRY 388 (473)
T ss_pred HHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHC
Confidence 999999998778999999999521 111 0 0 7999999999999999999999999999
Q ss_pred Ccccc-cCCCc
Q 002628 881 DLTVN-NNCEP 890 (899)
Q Consensus 881 gl~Vi-dgv~~ 890 (899)
|+||+ .+++|
T Consensus 389 G~pvI~s~~gg 399 (473)
T TIGR02095 389 GTVPIVRRTGG 399 (473)
T ss_pred CCCeEEccCCC
Confidence 97664 33333
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=3e-54 Score=492.81 Aligned_cols=360 Identities=37% Similarity=0.589 Sum_probs=292.8
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeee--
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS-- 589 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~-- 589 (899)
|||+||++|++|++++||+|++|..|+++|+++||+|+||+|.|++..... ..... +.. . ..+++|.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~----~~~-~----~~~~~~~~~~ 70 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQV----VGR-L----DLFTVLFGHL 70 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceE----EEE-e----eeEEEEEEeE
Confidence 899999999999999999999999999999999999999999998754221 11110 000 0 01355655
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 002628 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (899)
Q Consensus 590 ~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~g 669 (899)
..+|+++|+++++ .+|.++.+|++.|+..||++|++++++++++.+.+|||||+|+|++++++.++...| ..++.+
T Consensus 71 ~~~gv~v~~v~~~---~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~ 146 (466)
T PRK00654 71 EGDGVPVYLIDAP---HLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPD 146 (466)
T ss_pred EcCCceEEEEeCH---HHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCC
Confidence 4589999999853 378888899988999999999999999998777799999999999999855444443 223457
Q ss_pred CeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-----hccccc
Q 002628 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQGLH 744 (899)
Q Consensus 670 iPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e-----~g~GL~ 744 (899)
+|+|+|+|++.++|.++...+..+|+++..+. .+.++ ++..+++++.++.+||.|+|||+.++++ +++|+.
T Consensus 147 ~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~ 222 (466)
T PRK00654 147 IKTVFTIHNLAYQGLFPAEILGELGLPAEAFH-LEGLE---FYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLE 222 (466)
T ss_pred CCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC-chhhh---cCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChH
Confidence 99999999999999887766666777655432 22232 4456889999999999999999999887 345676
Q ss_pred cccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHH
Q 002628 745 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 824 (899)
Q Consensus 745 ~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlL 824 (899)
..+..+..|+.+||||||++.|+|.+++.++.+|+++++++|..+|..+|+++|++. ++.|+|+|+||++++||++++
T Consensus 223 ~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~--~~~~~i~~vGRl~~~KG~~~l 300 (466)
T PRK00654 223 GLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPD--DDAPLFAMVSRLTEQKGLDLV 300 (466)
T ss_pred HHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCC--CCCcEEEEeeccccccChHHH
Confidence 666777889999999999999999988889999999999999999999999999972 467999999999999999999
Q ss_pred HHHHHHhhccCcEEEEEcCCCcc---CccH-----------------H---HHHHhcCeeEEcCCcCcChHHHHHHccCC
Q 002628 825 RHAIYRTLELGGQFILLGSSPVP---HIQV-----------------Y---PILLSSFSFLRKHIFNICNLYIKLGQGGD 881 (899)
Q Consensus 825 IeAi~~Lle~dvqLVIVG~Gp~~---~Lqk-----------------e---~iyaaADIfVlPS~~EpFGLV~LEAMg~g 881 (899)
++|++++.+.+++|+|+|+|+.. .++. + .+|++||+||+||.+||||++++|||++|
T Consensus 301 i~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G 380 (466)
T PRK00654 301 LEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYG 380 (466)
T ss_pred HHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCC
Confidence 99999988778999999998632 1110 1 78999999999999999999999999999
Q ss_pred ccc-ccCCCcc
Q 002628 882 LTV-NNNCEPW 891 (899)
Q Consensus 882 l~V-idgv~~~ 891 (899)
+|+ ..+++|.
T Consensus 381 ~p~V~~~~gG~ 391 (466)
T PRK00654 381 TLPIVRRTGGL 391 (466)
T ss_pred CCEEEeCCCCc
Confidence 654 5555543
No 7
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-52 Score=473.06 Aligned_cols=366 Identities=37% Similarity=0.559 Sum_probs=297.7
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccc-cccceeeeeccCCccccceeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDL-RALDVVVESYFDGRLFKNKVWVST 590 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L-~~l~v~v~syfdG~~~~~~V~~~~ 590 (899)
|||++++.|+.|++++||+|+++..|.++|.+.|++|+|++|.|+.... ...+. +.+. .....+.+...-..+....
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQK-EWRDLLKVVG-KFGVLKGGRAQLFIVKEYG 78 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhh-hhccccceee-EeeeeecccceEEEEEeec
Confidence 8999999999999999999999999999999999999999999995433 22221 1110 0000112211111112222
Q ss_pred eC-CeeEEEeCCCCCCccccc--CCCCCCCcchhhHHHHHHHHHHHHHHhC--CCceEEEECCCchhhHHHHHHHh-hcc
Q 002628 591 IE-GLPVYFIEPHHPDKFFWR--GQFYGEHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDL-YVP 664 (899)
Q Consensus 591 ve-GV~V~~L~~~~p~~~F~r--~~iYg~~Dd~~R~s~FsrAalelLrq~~--~kPDIIH~Hdw~talVapl~~~~-ya~ 664 (899)
.+ |+++++++.++ +|.| ...|++.|+..||.+|++++++++-... +.|||||+||||++++ |.+.+. +
T Consensus 79 ~~~~v~~~lid~~~---~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~-~~~lk~~~-- 152 (487)
T COG0297 79 KDGGVDLYLIDNPA---LFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLL-PAYLKQRY-- 152 (487)
T ss_pred ccCCCcEEEecChh---hcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHH-HHHHhhcc--
Confidence 23 39999999543 7877 3678888999999999999999985544 5899999999999998 555543 2
Q ss_pred CCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-----h
Q 002628 665 KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----G 739 (899)
Q Consensus 665 ~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e-----~ 739 (899)
.....+|.|+|+||+.|||.++.......|+|...+. ...++ +++.++++|+++.+||+|+||||+|+++ +
T Consensus 153 ~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~---~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~ 228 (487)
T COG0297 153 RSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLE---FYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEY 228 (487)
T ss_pred cccccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceee---ecCcchhhhhhheeccEEEEECHHHHHhhccccc
Confidence 1245799999999999999988666678899976665 45555 4577899999999999999999999998 6
Q ss_pred ccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCcc
Q 002628 740 GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQK 819 (899)
Q Consensus 740 g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qK 819 (899)
|+|+++++.....++++|.||||.+.|+|.+|+.++.+|+++.+.+|..+|..|++++|++. +.+.|++++||||+.||
T Consensus 229 g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~-~~~~pl~~~vsRl~~QK 307 (487)
T COG0297 229 GEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDV-DLPGPLFGFVSRLTAQK 307 (487)
T ss_pred cccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCC-CCCCcEEEEeecccccc
Confidence 88999999888899999999999999999999999999999998889999999999999983 55779999999999999
Q ss_pred CHHHHHHHHHHhhccCcEEEEEcCCCccCccHH------------------------HHHHhcCeeEEcCCcCcChHHHH
Q 002628 820 GVHLIRHAIYRTLELGGQFILLGSSPVPHIQVY------------------------PILLSSFSFLRKHIFNICNLYIK 875 (899)
Q Consensus 820 GvdlLIeAi~~Lle~dvqLVIVG~Gp~~~Lqke------------------------~iyaaADIfVlPS~~EpFGLV~L 875 (899)
|+|++++|+..+.+.++++||.|.| ++.++.. .+|++||++++||+|||||+++|
T Consensus 308 G~dl~~~~i~~~l~~~~~~vilG~g-d~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql 386 (487)
T COG0297 308 GLDLLLEAIDELLEQGWQLVLLGTG-DPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQL 386 (487)
T ss_pred chhHHHHHHHHHHHhCceEEEEecC-cHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHH
Confidence 9999999999999989999999999 4433221 99999999999999999999999
Q ss_pred HHccCC-cccccCCCcc
Q 002628 876 LGQGGD-LTVNNNCEPW 891 (899)
Q Consensus 876 EAMg~g-l~Vidgv~~~ 891 (899)
+||..| +||....+|.
T Consensus 387 ~amryGtvpIv~~tGGL 403 (487)
T COG0297 387 YAMRYGTLPIVRETGGL 403 (487)
T ss_pred HHHHcCCcceEcccCCc
Confidence 999777 5556665554
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.3e-50 Score=459.92 Aligned_cols=370 Identities=40% Similarity=0.631 Sum_probs=293.0
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||+|||+|++|+.++||+|+++.+|+++|+++||+|+|++|.|++........+... ..+..++.+....+++|...++
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVL-RLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEE-EEEeeccCCceeEEEEEEEEeC
Confidence 699999999999999999999999999999999999999999998654322111111 0011234555667889999999
Q ss_pred CeeEEEeCCCCCCcccccCC-----CCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCC
Q 002628 593 GLPVYFIEPHHPDKFFWRGQ-----FYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~-----iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL 667 (899)
|+++|+++++. +|.+.. .|++.++..+|.+|++++++++.+.+.+|||||+|+|++++++..+...+....+
T Consensus 80 gv~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~ 156 (476)
T cd03791 80 GVPVYFLDNPD---YFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFF 156 (476)
T ss_pred CceEEEEcChH---HcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccC
Confidence 99999998643 444433 4666788899999999999999877789999999999999875444333321124
Q ss_pred CCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-----hccc
Q 002628 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-----GGQG 742 (899)
Q Consensus 668 ~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e-----~g~G 742 (899)
.++|+|+|+||+.++|.++...+..++.+.... ..+.+..++..+++++.++.+||.|++||+.++++ +++|
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~g 233 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEEL---FHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEG 233 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccch---hhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcc
Confidence 589999999999999877765554444432111 11222235667899999999999999999999987 3456
Q ss_pred cccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHH
Q 002628 743 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 822 (899)
Q Consensus 743 L~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvd 822 (899)
++..+..+..++.+|+||||.+.|.|..++.++..|+.+.+.+|..+|.++++++|++. +++.++|+|+||+.++||++
T Consensus 234 l~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~-~~~~~~i~~vGrl~~~Kg~~ 312 (476)
T cd03791 234 LDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPV-DPDAPLFGFVGRLTEQKGID 312 (476)
T ss_pred hHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCc-CCCCCEEEEEeeccccccHH
Confidence 66666666789999999999999999988888888988888899999999999999962 45789999999999999999
Q ss_pred HHHHHHHHhhccCcEEEEEcCCCcc---Ccc---H--------------H---HHHHhcCeeEEcCCcCcChHHHHHHcc
Q 002628 823 LIRHAIYRTLELGGQFILLGSSPVP---HIQ---V--------------Y---PILLSSFSFLRKHIFNICNLYIKLGQG 879 (899)
Q Consensus 823 lLIeAi~~Lle~dvqLVIVG~Gp~~---~Lq---k--------------e---~iyaaADIfVlPS~~EpFGLV~LEAMg 879 (899)
++++|+..+.+.+++|+|+|.|+.. .+. . + .+|++||++++||.+||||++++|||+
T Consensus 313 ~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 392 (476)
T cd03791 313 LLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMR 392 (476)
T ss_pred HHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhh
Confidence 9999999998778999999998642 111 0 0 799999999999999999999999999
Q ss_pred CCcccc-cCCCc
Q 002628 880 GDLTVN-NNCEP 890 (899)
Q Consensus 880 ~gl~Vi-dgv~~ 890 (899)
+|+||+ .+++|
T Consensus 393 ~G~pvI~~~~gg 404 (476)
T cd03791 393 YGTVPIVRATGG 404 (476)
T ss_pred CCCCCEECcCCC
Confidence 998774 33444
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=3.8e-34 Score=336.47 Aligned_cols=368 Identities=18% Similarity=0.193 Sum_probs=269.4
Q ss_pred EEEEcCcc-----CCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc-cc-------ccc-----cc------
Q 002628 514 VIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR-ID-------DLR-----AL------ 569 (899)
Q Consensus 514 ILhIs~E~-----~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~-v~-------~L~-----~l------ 569 (899)
|+++|+|| .|. ..||+|+...+-.++++..|..+..+...|...--.. +. ... .+
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 56777777 364 6899999999999999999999999987765431110 00 000 00
Q ss_pred -----ceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCC-cccccC---CCCCCCcchhh---HHHHHHHHHHHHHHh
Q 002628 570 -----DVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRR---FSFFSRAALELLLQA 637 (899)
Q Consensus 570 -----~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~-~~F~r~---~iYg~~Dd~~R---~s~FsrAalelLrq~ 637 (899)
.+++.-.+.|....+++|...+.++++|+++...|+ .+|.|. ..|+. |...| +.+|+.++++.++..
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~-D~~~R~~Qe~fl~~a~l~~l~~l 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG-DKEMRIAQEIVLGIGGVRALRAL 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 001111134455568889988889999999865432 256665 46864 33444 499999999999888
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCC--------CCCCeEEEEecCCCCCCC--CChhhhh--------hcCCcccc
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKG--------LNSARVCFTCHNFEYQGT--APAKELA--------SCGLDVQQ 699 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~g--------L~giPiV~TIHn~~fqG~--~p~~~L~--------~~GL~~~~ 699 (899)
+.+|||||||+||++++++.+.+.....+ ..+.++|+|+||..++|. +|.+.+. .+|++...
T Consensus 159 ~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~ 238 (601)
T TIGR02094 159 GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ 238 (601)
T ss_pred CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHH
Confidence 89999999999999998544322211000 124789999999999997 7766552 35777654
Q ss_pred cCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccc----cccccCCCcEEEEecCccCCCCCCCcchhhh
Q 002628 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLH----STLNFHSKKFVGILNGIDTDAWNPATDTFLK 775 (899)
Q Consensus 700 l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~----~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~ 775 (899)
+.... .+.+..++.+|+++.|+.+||.|++||+.|++- +.++. ..+.....++..|.||||+..|.|.+++.+.
T Consensus 239 ~~~~~-~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v-~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~ 316 (601)
T TIGR02094 239 LLALG-RENPDDPEPFNMTVLALRLSRIANGVSKLHGEV-SRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLY 316 (601)
T ss_pred HHhhh-hhccCccCceeHHHHHHHhCCeeeeecHHHHHH-HHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHH
Confidence 43211 221101357999999999999999999999883 11222 2223345679999999999999999999999
Q ss_pred hhccccc----------------------ccchhhhHHHHHH---------------------HcCCCCCCCCCcEEEEE
Q 002628 776 VQYNAND----------------------LQGKAENKESIRK---------------------HLGLSSADARKPLVGCI 812 (899)
Q Consensus 776 ~~ysadd----------------------l~GK~~~K~aLRk---------------------~LGLs~~d~~kpLVgfV 812 (899)
.+|..++ +++|..||.+|.+ ++|++ .+++.|++++|
T Consensus 317 ~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~-~dpd~~~ig~v 395 (601)
T TIGR02094 317 ERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRF-LDPDVLTIGFA 395 (601)
T ss_pred HHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccc-cCCCCcEEEEE
Confidence 9998877 4799999999987 46665 46788999999
Q ss_pred ecCCCccCHHHHHHHHHHhhc------cCcEEEEEcCCCccC-----ccH--------------------------HHHH
Q 002628 813 TRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVPH-----IQV--------------------------YPIL 855 (899)
Q Consensus 813 GRL~~qKGvdlLIeAi~~Lle------~dvqLVIVG~Gp~~~-----Lqk--------------------------e~iy 855 (899)
+|++.+||++++++++.++.+ .+++||++|.|...+ +.+ +.++
T Consensus 396 ~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~ 475 (601)
T TIGR02094 396 RRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLV 475 (601)
T ss_pred EcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHh
Confidence 999999999999999988863 589999999986431 111 0999
Q ss_pred HhcCeeEE-cCC-cCcChHHHHHHccCC---ccccc
Q 002628 856 LSSFSFLR-KHI-FNICNLYIKLGQGGD---LTVNN 886 (899)
Q Consensus 856 aaADIfVl-PS~-~EpFGLV~LEAMg~g---l~Vid 886 (899)
++||++++ ||+ +||||+++|.||..| ++|.|
T Consensus 476 aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~D 511 (601)
T TIGR02094 476 SGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILD 511 (601)
T ss_pred hhheeEEeCCCCCcCCchHHHHHHHHcCCceeeccc
Confidence 99999999 999 999999999999444 66666
No 10
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=4.7e-35 Score=310.15 Aligned_cols=229 Identities=42% Similarity=0.720 Sum_probs=165.3
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc--cccccccceeeee--ccCCccccceeee
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR--IDDLRALDVVVES--YFDGRLFKNKVWV 588 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~--v~~L~~l~v~v~s--yfdG~~~~~~V~~ 588 (899)
|||||++|++|++++||+|+++.+|+++|+++||+|+||+|.|+...... ...+..+...+.. .+.. .+.+++|.
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 79999999999999999999999999999999999999999997765432 1111111100000 0011 14578898
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCC-----CcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhc
Q 002628 589 STIEGLPVYFIEPHHPDKFFWRGQFYGE-----HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYV 663 (899)
Q Consensus 589 ~~veGV~V~~L~~~~p~~~F~r~~iYg~-----~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya 663 (899)
...+|+++|+++++ .||.++.+|+. .|+..||++|++++++++++.+++||||||||||+++++.++...+.
T Consensus 80 ~~~~~v~v~~i~~~---~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~~~ 156 (245)
T PF08323_consen 80 YPVDGVPVYFIDNP---EYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKERYQ 156 (245)
T ss_dssp EEETTEEEEEEESH---HHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHCCS
T ss_pred EEcCCccEEEecCh---hhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhccccc
Confidence 88999999999864 37888889965 78999999999999999988778999999999999998444433332
Q ss_pred cC-CCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh----
Q 002628 664 PK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE---- 738 (899)
Q Consensus 664 ~~-gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e---- 738 (899)
.. .+.++|+|+||||+.|||.++...+..+|+++..+..++.++ +++.+|+++.|+.+||+|+||||+|+++
T Consensus 157 ~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~---~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 157 QDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYE---FYGQINFLKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp S------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTE---ETTEEEHHHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred cccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccc---cccccCHHHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 21 345799999999999999998877778899876654444444 7789999999999999999999999998
Q ss_pred -hccccccccc
Q 002628 739 -GGQGLHSTLN 748 (899)
Q Consensus 739 -~g~GL~~iL~ 748 (899)
+|+||+.+|+
T Consensus 234 ~~g~GL~~~l~ 244 (245)
T PF08323_consen 234 EFGEGLEGLLR 244 (245)
T ss_dssp HHHTT-HHHHH
T ss_pred ccCCChHHHhc
Confidence 5778877653
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.97 E-value=2.4e-29 Score=301.36 Aligned_cols=371 Identities=18% Similarity=0.219 Sum_probs=259.1
Q ss_pred eEEEEcCcc-----CCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc-c---------------cccc----
Q 002628 513 HVIHIAAEM-----APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR-I---------------DDLR---- 567 (899)
Q Consensus 513 KILhIs~E~-----~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~-v---------------~~L~---- 567 (899)
.|+++|.|| .|. ..||+|+...+-.+++...|..+..+...|...--.. + ..++
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 444999998 364 6899999999999999999999999987665431100 0 0000
Q ss_pred ----ccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCC-cccccC---CCCCCCcchhh---HHHHHHHHHHHHHH
Q 002628 568 ----ALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-KFFWRG---QFYGEHDDFRR---FSFFSRAALELLLQ 636 (899)
Q Consensus 568 ----~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~-~~F~r~---~iYg~~Dd~~R---~s~FsrAalelLrq 636 (899)
+-.+.+.-.+.|....+++|...+.++++|+++...+. .+|.|. ..|+. |+..| +.+|+.+.++.++.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-D~~~Rl~Qe~~Lg~agl~~Lr~ 244 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-DQETRIQQEILLGIGGVRALRA 244 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111234545568899998889999999976432 235554 46874 56677 58999999999988
Q ss_pred hCCCceEEEECCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCCCCC--CCChhhhh--------hcCCcc
Q 002628 637 AGKQPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG--TAPAKELA--------SCGLDV 697 (899)
Q Consensus 637 ~~~kPDIIH~Hdw~talVapl~~~~ya~~-g--------L~giPiV~TIHn~~fqG--~~p~~~L~--------~~GL~~ 697 (899)
.+.+|||||||+||++++++-..+.+... + ..+..+|||+|++.++| .+|.+.+. .+|++.
T Consensus 245 lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~ 324 (778)
T cd04299 245 LGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSR 324 (778)
T ss_pred hCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCH
Confidence 88899999999999999854222111100 0 12578999999999999 78766552 257765
Q ss_pred cccCCccccccc-ccccchhhhhHHhhhccEEEEeChhhHH---hhccccccccccCCCcEEEEecCccCCCCC-CCcch
Q 002628 698 QQLNRPDRMQDN-SAHDRINPLKGAIVFSNIVTTVSPSYAQ---EGGQGLHSTLNFHSKKFVGILNGIDTDAWN-PATDT 772 (899)
Q Consensus 698 ~~l~~pdrL~d~-~~~~~in~lK~ai~~AD~VItVS~sya~---e~g~GL~~iL~~~~~KI~VIpNGID~e~f~-P~~d~ 772 (899)
..+.... ++.+ ..++.+|+.+.|+++|+.|++||+.+.. +...++..-+.....++..|.||||+..|. |..++
T Consensus 325 ~~~~~lg-~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~ 403 (778)
T cd04299 325 DRFLALG-RENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRE 403 (778)
T ss_pred HHHhhhc-cccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHH
Confidence 5443221 2210 0135689999999999999999998843 300011111112256799999999999998 87777
Q ss_pred hhhhhc---------------------ccccccchhhhHHHHHHHc-----------CCCC---------CCCCCcEEEE
Q 002628 773 FLKVQY---------------------NANDLQGKAENKESIRKHL-----------GLSS---------ADARKPLVGC 811 (899)
Q Consensus 773 ~L~~~y---------------------saddl~GK~~~K~aLRk~L-----------GLs~---------~d~~kpLVgf 811 (899)
.+.... +.+-+++|..+|..|.+.. |++. .+++.++|+|
T Consensus 404 l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigf 483 (778)
T cd04299 404 LYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGF 483 (778)
T ss_pred HHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEee
Confidence 664321 1122668888888875553 3321 3677889999
Q ss_pred EecCCCccCHHHHHHHHHHhhc------cCcEEEEEcCCCccCcc------------H-------------------HHH
Q 002628 812 ITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVPHIQ------------V-------------------YPI 854 (899)
Q Consensus 812 VGRL~~qKGvdlLIeAi~~Lle------~dvqLVIVG~Gp~~~Lq------------k-------------------e~i 854 (899)
++|++.+||.+++++.+.++.+ .+++||++|.+...+.. + +.+
T Consensus 484 arRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~L 563 (778)
T cd04299 484 ARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHL 563 (778)
T ss_pred eecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHH
Confidence 9999999999999999888743 47999999998633211 1 199
Q ss_pred HHhcCeeEEcCC--cCcChHHHHHHccCC---ccccc
Q 002628 855 LLSSFSFLRKHI--FNICNLYIKLGQGGD---LTVNN 886 (899)
Q Consensus 855 yaaADIfVlPS~--~EpFGLV~LEAMg~g---l~Vid 886 (899)
+++|||+++||+ +||||++.|.||--| +.|.|
T Consensus 564 vaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlD 600 (778)
T cd04299 564 VQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLD 600 (778)
T ss_pred HhhhhhcccCCCCCCCCCccchHHHHHcCCeeeeccc
Confidence 999999999999 999999999999433 55555
No 12
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.96 E-value=1.7e-28 Score=278.59 Aligned_cols=301 Identities=17% Similarity=0.216 Sum_probs=185.4
Q ss_pred cCCcHHHHHHHHHHHHHHCCC--eEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCC
Q 002628 526 KVGGLGDVVAGLGKALQKKGH--LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHH 603 (899)
Q Consensus 526 kvGGLg~vV~~LArALqk~GH--eVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~ 603 (899)
.+||+++++.+|+++|.++|| +|+|+|+.++...... . +.. .+....+|++++.++..
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~------------~-~~~------~~~~~~~gv~v~r~~~~- 83 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSP------------D-YAQ------PIERIAPGARIVRLPFG- 83 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCC------------c-cCC------CeeEeCCCcEEEEecCC-
Confidence 379999999999999999998 9999997655321000 0 000 11223578888877521
Q ss_pred CCcccccCCCCCCCcchhh-HHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCC
Q 002628 604 PDKFFWRGQFYGEHDDFRR-FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQ 682 (899)
Q Consensus 604 p~~~F~r~~iYg~~Dd~~R-~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fq 682 (899)
+ ..|.....+.. ...|...+..++++.+.+|||||+|+|.+++++.++.. ..++|+|+|+|+....
T Consensus 84 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~------~~~~p~V~t~H~~~~~ 150 (439)
T TIGR02472 84 P-------RRYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSR------LLGVPLIFTGHSLGRE 150 (439)
T ss_pred C-------CCCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHH------HhCCCEEEecccccch
Confidence 1 11111011111 23455666677765445799999999887776433322 2478999999975321
Q ss_pred CCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-hccccccccccCCCcEEEEecCc
Q 002628 683 GTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGI 761 (899)
Q Consensus 683 G~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e-~g~GL~~iL~~~~~KI~VIpNGI 761 (899)
. ...+...|.....+. .+ ..+...+..++.++..+|.||++|+....+ +. .....++.|+.+|||||
T Consensus 151 ~---~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~----~~~~~~~~ki~vIpnGv 218 (439)
T TIGR02472 151 K---RRRLLAAGLKPQQIE---KQ--YNISRRIEAEEETLAHASLVITSTHQEIEEQYA----LYDSYQPERMQVIPPGV 218 (439)
T ss_pred h---hhhcccCCCChhhhh---hh--cchHHHHHHHHHHHHhCCEEEECCHHHHHHHHH----hccCCCccceEEECCCc
Confidence 0 001111111111100 00 001223345677889999999999765443 10 00123567899999999
Q ss_pred cCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh--ccCcEEE
Q 002628 762 DTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL--ELGGQFI 839 (899)
Q Consensus 762 D~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll--e~dvqLV 839 (899)
|++.|.|..... .....+..+ +.++.+ ++.++|+|+||+.++||++.|++|+..+. ....+++
T Consensus 219 d~~~f~~~~~~~-----------~~~~~~~~~-~~~~~~---~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~ 283 (439)
T TIGR02472 219 DLSRFYPPQSSE-----------ETSEIDNLL-APFLKD---PEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV 283 (439)
T ss_pred ChhhcCCCCccc-----------cchhHHHHH-Hhhccc---cCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE
Confidence 999998742100 001112222 334444 35689999999999999999999998643 2234444
Q ss_pred -EEcCCCcc-Ccc------------------------------HH---HHHHhc----CeeEEcCCcCcChHHHHHHccC
Q 002628 840 -LLGSSPVP-HIQ------------------------------VY---PILLSS----FSFLRKHIFNICNLYIKLGQGG 880 (899)
Q Consensus 840 -IVG~Gp~~-~Lq------------------------------ke---~iyaaA----DIfVlPS~~EpFGLV~LEAMg~ 880 (899)
|+|+|+.. .++ .+ .+|++| |+||+||.+|+||++++|||++
T Consensus 284 li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~ 363 (439)
T TIGR02472 284 LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAAC 363 (439)
T ss_pred EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHh
Confidence 57887642 110 01 678876 9999999999999999999999
Q ss_pred Cccccc
Q 002628 881 DLTVNN 886 (899)
Q Consensus 881 gl~Vid 886 (899)
|+||+.
T Consensus 364 G~PvV~ 369 (439)
T TIGR02472 364 GLPIVA 369 (439)
T ss_pred CCCEEE
Confidence 998853
No 13
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.96 E-value=5.5e-28 Score=289.24 Aligned_cols=362 Identities=14% Similarity=0.116 Sum_probs=214.3
Q ss_pred hhhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCcc----CCc---ccCCcHHHHHHHHHHHH--------HHCCC----
Q 002628 486 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEM----APV---AKVGGLGDVVAGLGKAL--------QKKGH---- 546 (899)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~MKILhIs~E~----~P~---akvGGLg~vV~~LArAL--------qk~GH---- 546 (899)
.++-+..|...|..|++.-.. .|||++|+.+. .|. ..+||..+||.+||++| +++||
T Consensus 234 ~~~~~~p~~~~~e~f~~~~p~----~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~ 309 (784)
T TIGR02470 234 DDLLEAPDPSVLEAFLGRIPM----VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITP 309 (784)
T ss_pred HHHHhCCChhHHHHHHhhCCc----cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 456677777777777654333 39999999998 332 12799999999999985 69999
Q ss_pred eEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchhh-HHH
Q 002628 547 LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRR-FSF 625 (899)
Q Consensus 547 eVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R-~s~ 625 (899)
+|+|+|...+..... .. ..+++. .. ..+|+.+..++.. |....-- .-|-...+.+. ..-
T Consensus 310 ~V~I~TR~~~~~~~~---~~---~~~~e~-~~-----------~~~~~~I~rvp~g-~~~~~~~-~~~i~k~~l~p~l~~ 369 (784)
T TIGR02470 310 KILIVTRLIPDAEGT---TC---NQRLEK-VY-----------GTEHAWILRVPFR-TENGIIL-RNWISRFEIWPYLET 369 (784)
T ss_pred eEEEEecCCCCcccc---cc---cccccc-cc-----------CCCceEEEEecCC-CCccccc-ccccCHHHHHHHHHH
Confidence 777998764421100 00 000000 01 1245555555421 0000000 00111112222 234
Q ss_pred HHHHHHHHHHH-hCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcc
Q 002628 626 FSRAALELLLQ-AGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (899)
Q Consensus 626 FsrAalelLrq-~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pd 704 (899)
|...+...+.+ .+.+|||||+|.|.+++++.++.. ..++|.|+|.|.+...... ..|...... .+
T Consensus 370 f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~------~lgVP~v~t~HsL~~~K~~------~~g~~~~~~--e~ 435 (784)
T TIGR02470 370 FAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLAR------KLGVTQCTIAHALEKTKYP------DSDIYWQEF--ED 435 (784)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHH------hcCCCEEEECCcchhhccc------ccccccccc--hh
Confidence 66666665553 356899999999999998644433 2589999999987422110 111110000 00
Q ss_pred cccccccccchhhhhHHhhhccEEEEeChhhHH----h-hccc---------ccccc---ccCCCcEEEEecCccCCCCC
Q 002628 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQ----E-GGQG---------LHSTL---NFHSKKFVGILNGIDTDAWN 767 (899)
Q Consensus 705 rL~d~~~~~~in~lK~ai~~AD~VItVS~sya~----e-~g~G---------L~~iL---~~~~~KI~VIpNGID~e~f~ 767 (899)
+. .+..++.....++..||.|||.|+.... . ..|+ |..+. .....|+.+||+|+|.+.|.
T Consensus 436 ~~---~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~ 512 (784)
T TIGR02470 436 KY---HFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYF 512 (784)
T ss_pred HH---HhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcC
Confidence 00 0111222345678889999999974322 1 1122 21111 12457999999999999998
Q ss_pred CCcchhhhh-hcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCC
Q 002628 768 PATDTFLKV-QYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSS 844 (899)
Q Consensus 768 P~~d~~L~~-~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~G 844 (899)
|.++..-.. ... ..+..---++...++.+|+.. ++++|+|+++||+.++||++.|++|+.++.. .+++|+|+|+|
T Consensus 513 P~~~~~~r~~~~~-~~ie~ll~~~~~~~~~~G~l~-d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg 590 (784)
T TIGR02470 513 PYSDKEKRLTNLH-PEIEELLFSLEDNDEHYGYLK-DPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGK 590 (784)
T ss_pred CCCchhhhhhhhh-cchhhhccchhhHHHHhCCCC-CCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCC
Confidence 854311000 000 000000113455678889742 4678999999999999999999999987643 46899999986
Q ss_pred Ccc----------CccH------H--------------------HHHH----hcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 845 PVP----------HIQV------Y--------------------PILL----SSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 845 p~~----------~Lqk------e--------------------~iya----aADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
+.. .+.+ + .+|+ ++|+||+||.+||||+|++|||+||+||
T Consensus 591 ~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPV 670 (784)
T TIGR02470 591 LDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPT 670 (784)
T ss_pred cccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCE
Confidence 420 0000 0 3443 3579999999999999999999999998
Q ss_pred ccCCCc
Q 002628 885 NNNCEP 890 (899)
Q Consensus 885 idgv~~ 890 (899)
+....|
T Consensus 671 VAT~~G 676 (784)
T TIGR02470 671 FATRFG 676 (784)
T ss_pred EEcCCC
Confidence 654433
No 14
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.96 E-value=8.5e-28 Score=266.69 Aligned_cols=294 Identities=17% Similarity=0.187 Sum_probs=189.6
Q ss_pred EEEEcCccCCcc-----cCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeee
Q 002628 514 VIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (899)
Q Consensus 514 ILhIs~E~~P~a-----kvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~ 588 (899)
|++|+.+..|.. ..||+++++.+|+++|.++||+|+|+++........ . .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~------~-------------------~ 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP------V-------------------V 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC------c-------------------c
Confidence 567777776642 269999999999999999999999999764321100 0 0
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHH-HHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCC
Q 002628 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAAL-ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGL 667 (899)
Q Consensus 589 ~~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAal-elLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL 667 (899)
...+|+.++.+... .+.. .+.......+..|....+ .++++...+|||||+|+|.+++++..+.. .
T Consensus 56 ~~~~~~~v~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~------~ 122 (405)
T TIGR03449 56 EVAPGVRVRNVVAG----PYEG---LDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRD------R 122 (405)
T ss_pred ccCCCcEEEEecCC----Cccc---CCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHH------h
Confidence 01246666655321 0100 000000011112333333 34443345899999999877665433222 2
Q ss_pred CCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccc
Q 002628 668 NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTL 747 (899)
Q Consensus 668 ~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL 747 (899)
.++|+|+|+|++.... ...+.....+ .. .......+..+..+|.|+++|+...+. +....
T Consensus 123 ~~~p~v~t~h~~~~~~---~~~~~~~~~~-------~~------~~~~~~e~~~~~~~d~vi~~s~~~~~~----~~~~~ 182 (405)
T TIGR03449 123 WGVPLVHTAHTLAAVK---NAALADGDTP-------EP------EARRIGEQQLVDNADRLIANTDEEARD----LVRHY 182 (405)
T ss_pred cCCCEEEeccchHHHH---HHhccCCCCC-------ch------HHHHHHHHHHHHhcCeEEECCHHHHHH----HHHHc
Confidence 5789999999863210 0000000000 00 001112355678899999999987765 21222
Q ss_pred ccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHH
Q 002628 748 NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 827 (899)
Q Consensus 748 ~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeA 827 (899)
+....++.+||||+|.+.|.|.. +...++++|++ +++++|+|+||+.++||++.+++|
T Consensus 183 ~~~~~ki~vi~ngvd~~~~~~~~-------------------~~~~~~~~~~~---~~~~~i~~~G~l~~~K~~~~li~a 240 (405)
T TIGR03449 183 DADPDRIDVVAPGADLERFRPGD-------------------RATERARLGLP---LDTKVVAFVGRIQPLKAPDVLLRA 240 (405)
T ss_pred CCChhhEEEECCCcCHHHcCCCc-------------------HHHHHHhcCCC---CCCcEEEEecCCCcccCHHHHHHH
Confidence 33467899999999998886631 33467788886 367899999999999999999999
Q ss_pred HHHhhcc----CcEEEEEcCCC-----cc-CccH-------------------H---HHHHhcCeeEEcCCcCcChHHHH
Q 002628 828 IYRTLEL----GGQFILLGSSP-----VP-HIQV-------------------Y---PILLSSFSFLRKHIFNICNLYIK 875 (899)
Q Consensus 828 i~~Lle~----dvqLVIVG~Gp-----~~-~Lqk-------------------e---~iyaaADIfVlPS~~EpFGLV~L 875 (899)
+..+.+. +++|+|+|.+. .. .+++ + .+|+.||+||+||..|+||++++
T Consensus 241 ~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~l 320 (405)
T TIGR03449 241 VAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAM 320 (405)
T ss_pred HHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHH
Confidence 9988642 38999999632 11 1110 0 89999999999999999999999
Q ss_pred HHccCCcccccC
Q 002628 876 LGQGGDLTVNNN 887 (899)
Q Consensus 876 EAMg~gl~Vidg 887 (899)
|||++|+||+..
T Consensus 321 EAma~G~Pvi~~ 332 (405)
T TIGR03449 321 EAQACGTPVVAA 332 (405)
T ss_pred HHHHcCCCEEEe
Confidence 999999998543
No 15
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.96 E-value=6.1e-28 Score=269.30 Aligned_cols=278 Identities=19% Similarity=0.218 Sum_probs=184.5
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|+..|.|. .||.++++..|+++|.++||+|+|+++.++..... .....
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------------~~~~~ 52 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI--------------------------RYLTN 52 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc--------------------------ccccC
Confidence 699999999996 79999999999999999999999999865421100 00124
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
|++++.++.. .+.+.... .++..+...+...+. ..+|||||+|++...+....++.. +..++|+
T Consensus 53 ~i~v~~~p~~----~~~~~~~~------~~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~~----~~~~~~~ 116 (398)
T cd03796 53 GLKVYYLPFV----VFYNQSTL------PTFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLHA----RTMGLKT 116 (398)
T ss_pred ceeEEEecce----eccCCccc------cchhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHh----hhcCCcE
Confidence 5666655421 01110111 011111122223333 358999999987654321121111 1357999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|+|.|+... ...... . + .-.+.+...+.+|.++++|+...+. +......+..
T Consensus 117 v~t~h~~~~--~~~~~~---------~-----------~--~~~~~~~~~~~~d~ii~~s~~~~~~----~~~~~~~~~~ 168 (398)
T cd03796 117 VFTDHSLFG--FADASS---------I-----------H--TNKLLRFSLADVDHVICVSHTSKEN----TVLRASLDPE 168 (398)
T ss_pred EEEeccccc--ccchhh---------H-----------H--hhHHHHHhhccCCEEEEecHhHhhH----HHHHhCCChh
Confidence 999997521 000000 0 0 0012345567899999999987653 1001123467
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||+|.+.|.|..+. . .++.++++|+||+.++||++.+++|+..+.
T Consensus 169 k~~vi~ngvd~~~f~~~~~~--------------------------~---~~~~~~i~~~grl~~~Kg~~~li~a~~~l~ 219 (398)
T cd03796 169 RVSVIPNAVDSSDFTPDPSK--------------------------R---DNDKITIVVISRLVYRKGIDLLVGIIPEIC 219 (398)
T ss_pred hEEEEcCccCHHHcCCCccc--------------------------C---CCCceEEEEEeccchhcCHHHHHHHHHHHH
Confidence 89999999999888764210 1 135689999999999999999999999886
Q ss_pred c--cCcEEEEEcCCCccC-ccH--------------------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc-
Q 002628 833 E--LGGQFILLGSSPVPH-IQV--------------------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN- 886 (899)
Q Consensus 833 e--~dvqLVIVG~Gp~~~-Lqk--------------------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid- 886 (899)
+ .+++|+|+|+|+... +.+ + .+|++||++|+||.+|+||++++|||++|+||+.
T Consensus 220 ~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s 299 (398)
T cd03796 220 KKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVST 299 (398)
T ss_pred hhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEEC
Confidence 4 489999999987431 110 1 8999999999999999999999999999999954
Q ss_pred CCCcc
Q 002628 887 NCEPW 891 (899)
Q Consensus 887 gv~~~ 891 (899)
+++|+
T Consensus 300 ~~gg~ 304 (398)
T cd03796 300 RVGGI 304 (398)
T ss_pred CCCCc
Confidence 45554
No 16
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.96 E-value=9.4e-28 Score=292.35 Aligned_cols=348 Identities=16% Similarity=0.130 Sum_probs=207.3
Q ss_pred CCCCCCeEEEEcCccCCc---------ccCCcHHHHHHHHHHHHHHCC--CeEEEEeeCCCCCc----cc-ccccccccc
Q 002628 507 SISSGLHVIHIAAEMAPV---------AKVGGLGDVVAGLGKALQKKG--HLVEIVLPKYDCMQ----YD-RIDDLRALD 570 (899)
Q Consensus 507 ~~~~~MKILhIs~E~~P~---------akvGGLg~vV~~LArALqk~G--HeVtVItP~Y~~~~----~~-~v~~L~~l~ 570 (899)
.+.++|.|++|+.+-.|. ..+||...||.+||++|+++| |+|+|+|....... +. .++.+...+
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~ 244 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRS 244 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccc
Confidence 356789999999876431 358999999999999999999 99999997643211 00 000000000
Q ss_pred eeeeeccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCCCCCcchh-hHHHHHHHHHHHHHHh------------
Q 002628 571 VVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFR-RFSFFSRAALELLLQA------------ 637 (899)
Q Consensus 571 v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~-R~s~FsrAalelLrq~------------ 637 (899)
.++- .-..+..+|+.++.++.. |. .-|.....++ ...-|...++.++.+.
T Consensus 245 ------~~~~----~~~~~~~~g~rIvRip~G-P~------~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~ 307 (1050)
T TIGR02468 245 ------SEND----GDEMGESSGAYIIRIPFG-PR------DKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGH 307 (1050)
T ss_pred ------cccc----cccccCCCCeEEEEeccC-CC------CCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 0000 001123468888777531 11 1122222222 2344667777766531
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCC-cccccCCcccccccccccchh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGL-DVQQLNRPDRMQDNSAHDRIN 716 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL-~~~~l~~pdrL~d~~~~~~in 716 (899)
...|||||+|+|.++.++..+.. ..++|+|+|.|.+. ......+...|. +..... ..+.+..++.
T Consensus 308 ~~~pDvIHaHyw~sG~aa~~L~~------~lgVP~V~T~HSLg---r~K~~~ll~~g~~~~~~~~-----~~y~~~~Ri~ 373 (1050)
T TIGR02468 308 PVWPYVIHGHYADAGDSAALLSG------ALNVPMVLTGHSLG---RDKLEQLLKQGRMSKEEIN-----STYKIMRRIE 373 (1050)
T ss_pred CCCCCEEEECcchHHHHHHHHHH------hhCCCEEEECccch---hhhhhhhcccccccccccc-----cccchHHHHH
Confidence 12499999999999998654433 35899999999763 111110111111 000000 0011234566
Q ss_pred hhhHHhhhccEEEEeChhhHHh----hcc---ccccccc-----------cCCCcEEEEecCccCCCCCCCcchhhhhhc
Q 002628 717 PLKGAIVFSNIVTTVSPSYAQE----GGQ---GLHSTLN-----------FHSKKFVGILNGIDTDAWNPATDTFLKVQY 778 (899)
Q Consensus 717 ~lK~ai~~AD~VItVS~sya~e----~g~---GL~~iL~-----------~~~~KI~VIpNGID~e~f~P~~d~~L~~~y 778 (899)
.+..++..||.|||+|+...++ |+. +|...|+ ....++.|||||||++.|.|.....-....
T Consensus 374 ~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~ 453 (1050)
T TIGR02468 374 AEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETE 453 (1050)
T ss_pred HHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhc
Confidence 7888999999999999988876 210 0111111 113499999999999999985311100000
Q ss_pred ccccc--cchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc----cCcEEEEEcCCCccC----
Q 002628 779 NANDL--QGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE----LGGQFILLGSSPVPH---- 848 (899)
Q Consensus 779 saddl--~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle----~dvqLVIVG~Gp~~~---- 848 (899)
..++. .........+++.+ .. +++|+|+||||+.++||++.||+|+..+.. .++. +|+|.|+...
T Consensus 454 ~~~~~~~~~~~~~~~~l~r~~-~~---pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~ 528 (1050)
T TIGR02468 454 GNEEHPAKPDPPIWSEIMRFF-TN---PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSS 528 (1050)
T ss_pred ccccccccccchhhHHHHhhc-cc---CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhc
Confidence 00000 00000112344333 33 478999999999999999999999998863 1444 4668765310
Q ss_pred --------ccH--------------------H--HHHHhc----CeeEEcCCcCcChHHHHHHccCCcccccC-CCc
Q 002628 849 --------IQV--------------------Y--PILLSS----FSFLRKHIFNICNLYIKLGQGGDLTVNNN-CEP 890 (899)
Q Consensus 849 --------Lqk--------------------e--~iyaaA----DIfVlPS~~EpFGLV~LEAMg~gl~Vidg-v~~ 890 (899)
+.. + .+|+.| |+||+||.+||||+|++|||+||+||+.. ++|
T Consensus 529 ~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG 605 (1050)
T TIGR02468 529 GSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG 605 (1050)
T ss_pred cchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC
Confidence 000 0 788877 69999999999999999999999998554 444
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.96 E-value=2.7e-27 Score=259.69 Aligned_cols=279 Identities=20% Similarity=0.247 Sum_probs=185.1
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||++|+..|+|. ..||.+.++.+|+++|.+. |+|+|++...+.. ..
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~-------------------------------~~ 47 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF-------------------------------DS 47 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh-------------------------------cC
Confidence 8999999999886 4699999999999999987 8888887532210 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCe
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giP 671 (899)
+|++++.+... .. .......+. .+... +.. .....+|||||+|+|.+++++ .+... +.++|
T Consensus 48 ~~~~~~~~~~~------~~--~~~~~~~~~---~~~~~-~~~-~~~~~~~divh~~~~~~~~~~-~~~~~-----~~~~p 108 (388)
T TIGR02149 48 EGLTVKGYRPW------SE--LKEANKALG---TFSVD-LAM-ANDPVDADVVHSHTWYTFLAG-HLAKK-----LYDKP 108 (388)
T ss_pred CCeEEEEecCh------hh--ccchhhhhh---hhhHH-HHH-hhCCCCCCeEeecchhhhhHH-HHHHH-----hcCCC
Confidence 34444433210 00 000000001 11111 111 112347999999998877653 22222 35899
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccc-ccC
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTL-NFH 750 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL-~~~ 750 (899)
+|+|+|+......+.... .+.... + ...+.+.++..+|.|+++|+.+.+. +...+ ...
T Consensus 109 ~v~~~h~~~~~~~~~~~~---~~~~~~------------~--~~~~~~~~~~~ad~vi~~S~~~~~~----~~~~~~~~~ 167 (388)
T TIGR02149 109 LVVTAHSLEPLRPWKEEQ---LGGGYK------------L--SSWAEKTAIEAADRVIAVSGGMRED----ILKYYPDLD 167 (388)
T ss_pred EEEEeecccccccccccc---cccchh------------H--HHHHHHHHHhhCCEEEEccHHHHHH----HHHHcCCCC
Confidence 999999874221110000 000000 0 0113466788899999999988775 21111 224
Q ss_pred CCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHH
Q 002628 751 SKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYR 830 (899)
Q Consensus 751 ~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~ 830 (899)
..++.+||||+|.+.|.|. .+..+++++|++ ++.++|+|+||+.++||++.+++|+..
T Consensus 168 ~~~i~vi~ng~~~~~~~~~-------------------~~~~~~~~~~~~---~~~~~i~~~Grl~~~Kg~~~li~a~~~ 225 (388)
T TIGR02149 168 PEKVHVIYNGIDTKEYKPD-------------------DGNVVLDRYGID---RSRPYILFVGRITRQKGVPHLLDAVHY 225 (388)
T ss_pred cceEEEecCCCChhhcCCC-------------------chHHHHHHhCCC---CCceEEEEEcccccccCHHHHHHHHHH
Confidence 5789999999999888763 134567888886 367899999999999999999999998
Q ss_pred hhccCcEEEEEcCCCcc-C----cc---------------------HH---HHHHhcCeeEEcCCcCcChHHHHHHccCC
Q 002628 831 TLELGGQFILLGSSPVP-H----IQ---------------------VY---PILLSSFSFLRKHIFNICNLYIKLGQGGD 881 (899)
Q Consensus 831 Lle~dvqLVIVG~Gp~~-~----Lq---------------------ke---~iyaaADIfVlPS~~EpFGLV~LEAMg~g 881 (899)
+. .+++++++|.|+.. . ++ .. .+|++||+||+||.+|+||++++|||++|
T Consensus 226 l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G 304 (388)
T TIGR02149 226 IP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACG 304 (388)
T ss_pred Hh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcC
Confidence 75 47889998876531 0 00 01 89999999999999999999999999999
Q ss_pred ccccc
Q 002628 882 LTVNN 886 (899)
Q Consensus 882 l~Vid 886 (899)
+||+.
T Consensus 305 ~PvI~ 309 (388)
T TIGR02149 305 TPVVA 309 (388)
T ss_pred CCEEE
Confidence 99954
No 18
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.95 E-value=5.4e-27 Score=262.23 Aligned_cols=305 Identities=16% Similarity=0.151 Sum_probs=195.0
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeC--CCCCcccccccccccceeeeeccCCccccceeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK--YDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~--Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~ 589 (899)
|||++|+..|+|. .||++.++.+|+++|.++||+|+|+|+. |+..... .+ +++..+ ...
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~--~~-----------~~~~~~----~~~ 61 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVG--EG-----------YSAWRY----RRE 61 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCC--cc-----------cccccc----eee
Confidence 8999999999996 7999999999999999999999999965 3221100 00 011100 111
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHH-HHHhCCCceEEEECCCch--hhHHHHHHHhhccCC
Q 002628 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL-LLQAGKQPDIIHCHDWQT--AFVAPLYWDLYVPKG 666 (899)
Q Consensus 590 ~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalel-Lrq~~~kPDIIH~Hdw~t--alVapl~~~~ya~~g 666 (899)
..+|+++++++... ... ..+. .....+..|....+.. ++....+|||||+|.+.. +++ ..+...
T Consensus 62 ~~~~i~v~r~~~~~----~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~-~~~~~~----- 128 (412)
T PRK10307 62 SEGGVTVWRCPLYV----PKQ--PSGL-KRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPG-ARLLAR----- 128 (412)
T ss_pred ecCCeEEEEccccC----CCC--ccHH-HHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHH-HHHHHH-----
Confidence 24678888764210 000 0000 0011111222222222 222236899999997543 222 122221
Q ss_pred CCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccc
Q 002628 667 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHST 746 (899)
Q Consensus 667 L~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~i 746 (899)
+.++|+|+++|++... .....|.....+ + ..-...+++.++..+|.|+++|+...+. +..
T Consensus 129 ~~~~~~v~~~~d~~~~------~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~ad~ii~~S~~~~~~----~~~- 188 (412)
T PRK10307 129 LSGARTWLHIQDYEVD------AAFGLGLLKGGK-----V----ARLATAFERSLLRRFDNVSTISRSMMNK----ARE- 188 (412)
T ss_pred hhCCCEEEEeccCCHH------HHHHhCCccCcH-----H----HHHHHHHHHHHHhhCCEEEecCHHHHHH----HHH-
Confidence 3578999999986421 111111110000 0 0001124567788999999999988776 211
Q ss_pred cccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHH
Q 002628 747 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 826 (899)
Q Consensus 747 L~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIe 826 (899)
......++.+||||+|.+.|.|... ..+..+++.+|++. +.++|+|+||+.+.||++.|++
T Consensus 189 ~~~~~~~i~vi~ngvd~~~~~~~~~----------------~~~~~~~~~~~~~~---~~~~i~~~G~l~~~kg~~~li~ 249 (412)
T PRK10307 189 KGVAAEKVIFFPNWSEVARFQPVAD----------------ADVDALRAQLGLPD---GKKIVLYSGNIGEKQGLELVID 249 (412)
T ss_pred cCCCcccEEEECCCcCHhhcCCCCc----------------cchHHHHHHcCCCC---CCEEEEEcCccccccCHHHHHH
Confidence 1234678999999999988876321 11345788899873 5689999999999999999999
Q ss_pred HHHHhhc-cCcEEEEEcCCCccC-ccH------------------H---HHHHhcCeeEEcCCcCcC----hHHHHHHcc
Q 002628 827 AIYRTLE-LGGQFILLGSSPVPH-IQV------------------Y---PILLSSFSFLRKHIFNIC----NLYIKLGQG 879 (899)
Q Consensus 827 Ai~~Lle-~dvqLVIVG~Gp~~~-Lqk------------------e---~iyaaADIfVlPS~~EpF----GLV~LEAMg 879 (899)
|+..+.+ .+++|+|+|+|+... +++ + .+|++||++|+||..|++ |..++|||+
T Consensus 250 a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama 329 (412)
T PRK10307 250 AARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLA 329 (412)
T ss_pred HHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHH
Confidence 9998754 369999999997542 111 0 799999999999999995 455799999
Q ss_pred CCcccccC
Q 002628 880 GDLTVNNN 887 (899)
Q Consensus 880 ~gl~Vidg 887 (899)
+|+||+..
T Consensus 330 ~G~PVi~s 337 (412)
T PRK10307 330 SGRNVVAT 337 (412)
T ss_pred cCCCEEEE
Confidence 99999664
No 19
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.95 E-value=5.4e-27 Score=268.00 Aligned_cols=286 Identities=16% Similarity=0.228 Sum_probs=182.2
Q ss_pred CCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeee
Q 002628 509 SSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (899)
Q Consensus 509 ~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~ 588 (899)
+++|||++++..+ |+...||.+.++.+|+++|.++||+|+|+++..+... . +
T Consensus 56 ~~~mrI~~~~~~~-~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~--~--------------~----------- 107 (465)
T PLN02871 56 SRPRRIALFVEPS-PFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ--E--------------F----------- 107 (465)
T ss_pred CCCceEEEEECCc-CCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc--c--------------c-----------
Confidence 7789999997533 3345899999999999999999999999997533110 0 0
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 002628 589 STIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (899)
Q Consensus 589 ~~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~ 668 (899)
.|+.++.+.. .+-.++.. .. ..+. +...+...++ ..+|||||+|++.....+.+++.. ..
T Consensus 108 ---~g~~v~~~~~-~~~~~~~~--~~------~~~~-~~~~l~~~i~--~~kpDiIh~~~~~~~~~~~~~~ak-----~~ 167 (465)
T PLN02871 108 ---HGAKVIGSWS-FPCPFYQK--VP------LSLA-LSPRIISEVA--RFKPDLIHASSPGIMVFGALFYAK-----LL 167 (465)
T ss_pred ---cCceeeccCC-cCCccCCC--ce------eecc-CCHHHHHHHH--hCCCCEEEECCCchhHHHHHHHHH-----Hh
Confidence 1111111100 00000100 00 0000 1112234444 358999999985432222222222 25
Q ss_pred CCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccc
Q 002628 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (899)
Q Consensus 669 giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~ 748 (899)
++|+|+|+|+.... ..+. .+.. . + ......+.+.....+|.|+++|+...+. +.....
T Consensus 168 ~ip~V~~~h~~~~~-~~~~-----~~~~--~------~----~~~~~~~~r~~~~~ad~ii~~S~~~~~~----l~~~~~ 225 (465)
T PLN02871 168 CVPLVMSYHTHVPV-YIPR-----YTFS--W------L----VKPMWDIIRFLHRAADLTLVTSPALGKE----LEAAGV 225 (465)
T ss_pred CCCEEEEEecCchh-hhhc-----ccch--h------h----HHHHHHHHHHHHhhCCEEEECCHHHHHH----HHHcCC
Confidence 79999999964210 0000 0000 0 0 0001123456677899999999988776 221111
Q ss_pred cCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHH
Q 002628 749 FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 828 (899)
Q Consensus 749 ~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi 828 (899)
....++.+||||||.+.|.|..+ ...++++++.. .++.++|+|+||+.++||++.+++|+
T Consensus 226 ~~~~kv~vi~nGvd~~~f~p~~~------------------~~~~~~~~~~~--~~~~~~i~~vGrl~~~K~~~~li~a~ 285 (465)
T PLN02871 226 TAANRIRVWNKGVDSESFHPRFR------------------SEEMRARLSGG--EPEKPLIVYVGRLGAEKNLDFLKRVM 285 (465)
T ss_pred CCcCeEEEeCCccCccccCCccc------------------cHHHHHHhcCC--CCCCeEEEEeCCCchhhhHHHHHHHH
Confidence 23578999999999998877421 12344455322 13578999999999999999999999
Q ss_pred HHhhccCcEEEEEcCCCccC-ccH----------------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 829 YRTLELGGQFILLGSSPVPH-IQV----------------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 829 ~~Lle~dvqLVIVG~Gp~~~-Lqk----------------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
.++. +++|+|+|+|+... +++ + .+|+.||+||+||.+|+||++++|||++|+||+.
T Consensus 286 ~~~~--~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~ 360 (465)
T PLN02871 286 ERLP--GARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVA 360 (465)
T ss_pred HhCC--CcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEE
Confidence 8874 79999999997542 111 1 8999999999999999999999999999999963
No 20
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=4.7e-26 Score=247.05 Aligned_cols=277 Identities=21% Similarity=0.187 Sum_probs=182.3
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||++++ +|. .||.++++.+|+++|.++||+|+|++...+..... . .
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~--------------~--------------~ 47 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDE--------------Y--------------S 47 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhh--------------h--------------c
Confidence 7999997 343 69999999999999999999999998653211000 0 0
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCe
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giP 671 (899)
.++.++.++.. .+.......+ . ......+.++++ ..+|||||+|.+....++..+...+. +..++|
T Consensus 48 ~~~~~~~~~~~----~~~~~~~~~~--~----~~~~~~l~~~i~--~~~~divh~~~~~~~~~~~~~~~~~~--~~~~~~ 113 (371)
T cd04962 48 PNIFFHEVEVP----QYPLFQYPPY--D----LALASKIAEVAK--RYKLDLLHVHYAVPHAVAAYLAREIL--GKKDLP 113 (371)
T ss_pred cCeEEEEeccc----ccchhhcchh--H----HHHHHHHHHHHh--cCCccEEeecccCCccHHHHHHHHhc--CcCCCc
Confidence 11222211100 0000000000 0 112233444554 35899999998765443233322221 113799
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCC
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~ 751 (899)
+|+|+|+..+.- .+... ....+.+.++..+|.|+++|+...+. +.... ...
T Consensus 114 ~i~~~h~~~~~~---------~~~~~---------------~~~~~~~~~~~~~d~ii~~s~~~~~~----~~~~~-~~~ 164 (371)
T cd04962 114 VVTTLHGTDITL---------VGQDP---------------SFQPATRFSIEKSDGVTAVSESLRQE----TYELF-DIT 164 (371)
T ss_pred EEEEEcCCcccc---------ccccc---------------cchHHHHHHHhhCCEEEEcCHHHHHH----HHHhc-CCc
Confidence 999999764210 00000 00123466788999999999987765 21111 135
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHh
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRT 831 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~L 831 (899)
.++.+||||+|...|.|.. +...++++|++ ++.++++|+||+.++||++.+++|+..+
T Consensus 165 ~~i~vi~n~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~~~il~~g~l~~~K~~~~li~a~~~l 222 (371)
T cd04962 165 KEIEVIPNFVDEDRFRPKP-------------------DEALKRRLGAP---EGEKVLIHISNFRPVKRIDDVIRIFAKV 222 (371)
T ss_pred CCEEEecCCcCHhhcCCCc-------------------hHHHHHhcCCC---CCCeEEEEecccccccCHHHHHHHHHHH
Confidence 6899999999987665531 22355677876 3678899999999999999999999988
Q ss_pred hcc-CcEEEEEcCCCccC-ccH--------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 832 LEL-GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 832 le~-dvqLVIVG~Gp~~~-Lqk--------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
... +++++++|.|+... ++. ..+|+.||++|+||.+|+||++++|||++|+||+.
T Consensus 223 ~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~ 299 (371)
T cd04962 223 RKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVA 299 (371)
T ss_pred HhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEE
Confidence 653 78999999997531 110 19999999999999999999999999999988854
No 21
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.94 E-value=2.7e-26 Score=259.39 Aligned_cols=303 Identities=13% Similarity=0.093 Sum_probs=179.5
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
||||+|...+ ..||+|.++.+|++.|.++||+|.++.-+........ . .
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~---~------------------------~ 49 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV---S------------------------H 49 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc---c------------------------c
Confidence 8999998753 5799999999999999999999999986533221100 0 0
Q ss_pred CCee-EEEeCCCCC-------CcccccCCCCCCCcchhhHHHHHH-HHHHHHHHhCCCceEEEECCCchhhHHH-HHHHh
Q 002628 592 EGLP-VYFIEPHHP-------DKFFWRGQFYGEHDDFRRFSFFSR-AALELLLQAGKQPDIIHCHDWQTAFVAP-LYWDL 661 (899)
Q Consensus 592 eGV~-V~~L~~~~p-------~~~F~r~~iYg~~Dd~~R~s~Fsr-AalelLrq~~~kPDIIH~Hdw~talVap-l~~~~ 661 (899)
++++ ++.+.+.-. .++|.+ ..+++. +..+++.+ ..+|||||+|..+++++.. .+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~ 116 (405)
T PRK10125 50 QNYPQVIKHTPRMTAMANIALFRLFNR------------DLFGNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRF 116 (405)
T ss_pred CCcceEEEecccHHHHHHHHHHHhcch------------hhcchHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHH
Confidence 0110 111111000 000111 111222 22234433 5789999999888754321 11110
Q ss_pred --hccCCCCCCeEEEEecCCC-CCCCCChhh-----hhhcCCcccccCCccccccc---ccccchhhhhHHhhhccEEEE
Q 002628 662 --YVPKGLNSARVCFTCHNFE-YQGTAPAKE-----LASCGLDVQQLNRPDRMQDN---SAHDRINPLKGAIVFSNIVTT 730 (899)
Q Consensus 662 --ya~~gL~giPiV~TIHn~~-fqG~~p~~~-----L~~~GL~~~~l~~pdrL~d~---~~~~~in~lK~ai~~AD~VIt 730 (899)
.......++|+|+|+|++. +.|++.... -..|+-.+..-..|....|. .+..+....+.....++.+|+
T Consensus 117 ~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~ 196 (405)
T PRK10125 117 CEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFIS 196 (405)
T ss_pred HhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 0001135789999999985 566553210 11233222210011111110 011111122233344678999
Q ss_pred eChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEE
Q 002628 731 VSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVG 810 (899)
Q Consensus 731 VS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVg 810 (899)
+|...++. +.+.+ ...++.+||||||++.+.+..+. . . .+ . .+++++|+
T Consensus 197 ~S~~l~~~----~~~~~--~~~~i~vI~NGid~~~~~~~~~~------~--------~----~~----~---~~~~~~il 245 (405)
T PRK10125 197 PSQHVADA----FNSLY--GPGRCRIINNGIDMATEAILAEL------P--------P----VR----E---TQGKPKIA 245 (405)
T ss_pred cCHHHHHH----HHHHc--CCCCEEEeCCCcCcccccccccc------c--------c----cc----c---CCCCCEEE
Confidence 99988876 22222 24689999999998644332100 0 0 00 0 12567899
Q ss_pred EEecC--CCccCHHHHHHHHHHhhccCcEEEEEcCCCccC---c-----c--H---HHHHHhcCeeEEcCCcCcChHHHH
Q 002628 811 CITRL--VPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH---I-----Q--V---YPILLSSFSFLRKHIFNICNLYIK 875 (899)
Q Consensus 811 fVGRL--~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~~---L-----q--k---e~iyaaADIfVlPS~~EpFGLV~L 875 (899)
++||. .+.||++.+++|+..+. .+++|+|+|.|+... + . . ..+|++||+||+||.+|+||+|++
T Consensus 246 ~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vil 324 (405)
T PRK10125 246 VVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILC 324 (405)
T ss_pred EEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHH
Confidence 99994 37899999999999874 478999999875321 1 1 1 189999999999999999999999
Q ss_pred HHccCCcccc-cCCCc
Q 002628 876 LGQGGDLTVN-NNCEP 890 (899)
Q Consensus 876 EAMg~gl~Vi-dgv~~ 890 (899)
|||+||+||+ .+++|
T Consensus 325 EAmA~G~PVVat~~gG 340 (405)
T PRK10125 325 EALSIGVPVIATHSDA 340 (405)
T ss_pred HHHHcCCCEEEeCCCC
Confidence 9999999984 44555
No 22
>PLN00142 sucrose synthase
Probab=99.94 E-value=4.9e-26 Score=272.76 Aligned_cols=352 Identities=14% Similarity=0.148 Sum_probs=209.2
Q ss_pred hhhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCccC--C-----cccCCcHHHHHHHHH--------HHHHHCCCeEE-
Q 002628 486 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA--P-----VAKVGGLGDVVAGLG--------KALQKKGHLVE- 549 (899)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~MKILhIs~E~~--P-----~akvGGLg~vV~~LA--------rALqk~GHeVt- 549 (899)
.++-+..|...|..|++.-.. -|+|++|+++-+ | ...+||.-+||.+++ ++|+++||+|+
T Consensus 258 ~~~~~~p~~~~~e~f~~~~p~----~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~ 333 (815)
T PLN00142 258 LDLLQAPDPSTLEKFLGRIPM----VFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKP 333 (815)
T ss_pred HHHHhCCChhHHHHHHhhhhH----hHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 455667777777777654322 378999998753 2 234799999997655 67889999885
Q ss_pred ---EEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCC-c----ccccCCCCCCCcchh
Q 002628 550 ---IVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD-K----FFWRGQFYGEHDDFR 621 (899)
Q Consensus 550 ---VItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~-~----~F~r~~iYg~~Dd~~ 621 (899)
|+|...+..... ....+++ +....+++.+..++.. |. + +.++...+++
T Consensus 334 ~v~i~TR~i~~~~~~------~~~~~~e------------~v~~~~~~~I~rvP~g-~~~~~l~~~i~ke~l~p~----- 389 (815)
T PLN00142 334 QILIVTRLIPDAKGT------TCNQRLE------------KVSGTEHSHILRVPFR-TEKGILRKWISRFDVWPY----- 389 (815)
T ss_pred eeEEEEeccCCccCC------cccCcce------------eccCCCceEEEecCCC-CCccccccccCHHHHHHH-----
Confidence 888654321100 0000000 0001234555544311 10 0 1111111111
Q ss_pred hHHHHHHHHHHHHH-HhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCccccc
Q 002628 622 RFSFFSRAALELLL-QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQL 700 (899)
Q Consensus 622 R~s~FsrAalelLr-q~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l 700 (899)
..-|...+...+. ..+..|||||+|+|.++++|..+... .++|.|+|.|.+.-... ...|......
T Consensus 390 -L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~------lgVP~v~T~HsL~k~K~------~~~~~~~~~~ 456 (815)
T PLN00142 390 -LETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKY------PDSDIYWKKF 456 (815)
T ss_pred -HHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHH------hCCCEEEEcccchhhhc------cccCCccccc
Confidence 2235666666653 34567999999999999986555443 58999999997741110 0111110000
Q ss_pred CCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-------h-cc------cccccc---ccCCCcEEEEecCccC
Q 002628 701 NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-------G-GQ------GLHSTL---NFHSKKFVGILNGIDT 763 (899)
Q Consensus 701 ~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e-------~-g~------GL~~iL---~~~~~KI~VIpNGID~ 763 (899)
. .+ +.+..++.....++..||.|||.|...... | .+ ||..++ .....|+.+||+|+|.
T Consensus 457 e--~~---y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~ 531 (815)
T PLN00142 457 D--DK---YHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADM 531 (815)
T ss_pred c--hh---hhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCCh
Confidence 0 00 012223445677888999999999655431 1 00 111111 1124589999999999
Q ss_pred CCCCCCcchh--hhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEE
Q 002628 764 DAWNPATDTF--LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFI 839 (899)
Q Consensus 764 e~f~P~~d~~--L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLV 839 (899)
..|.|..+.. +...++ .+....-+....++.+|+.. ++++|+|+++||+.++||++.|++|+.++.+ .+++|+
T Consensus 532 ~~F~P~~~~~~rl~~l~n--~I~~~l~~~~~~~e~lg~l~-~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LV 608 (815)
T PLN00142 532 SIYFPYTEKQKRLTSLHP--SIEELLYSPEQNDEHIGYLK-DRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLV 608 (815)
T ss_pred hhcCCCChHHhhHHhhcc--cchhhcCChHHHHHHhCCcc-CCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEE
Confidence 9998864221 111111 11112223344567788742 4577899999999999999999999998754 379999
Q ss_pred EEcCCCcc-------C------ccH-----------------------H---HHHH-hcCeeEEcCCcCcChHHHHHHcc
Q 002628 840 LLGSSPVP-------H------IQV-----------------------Y---PILL-SSFSFLRKHIFNICNLYIKLGQG 879 (899)
Q Consensus 840 IVG~Gp~~-------~------Lqk-----------------------e---~iya-aADIfVlPS~~EpFGLV~LEAMg 879 (899)
|+|+|... . +.. . .+++ ++|+||+||.+||||+|++|||+
T Consensus 609 IVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA 688 (815)
T PLN00142 609 VVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMT 688 (815)
T ss_pred EEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHH
Confidence 99987210 0 000 0 2333 57999999999999999999999
Q ss_pred CCccccc
Q 002628 880 GDLTVNN 886 (899)
Q Consensus 880 ~gl~Vid 886 (899)
||+||+.
T Consensus 689 ~GlPVVA 695 (815)
T PLN00142 689 CGLPTFA 695 (815)
T ss_pred cCCCEEE
Confidence 9988853
No 23
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.94 E-value=3.4e-25 Score=241.75 Aligned_cols=281 Identities=21% Similarity=0.303 Sum_probs=182.0
Q ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCCc
Q 002628 527 VGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDK 606 (899)
Q Consensus 527 vGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~~ 606 (899)
.||++.++.+|+++|+++||+|+|+++........ . .....++.++.+... +..
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~---------------------~~~~~~~~~~~~~~~-~~~ 73 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPP----I---------------------VELAPGVRVVRVPAG-PAE 73 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCC----c---------------------cccccceEEEecccc-ccc
Confidence 68999999999999999999999998754321100 0 001245556555421 000
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCC
Q 002628 607 FFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAP 686 (899)
Q Consensus 607 ~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p 686 (899)
+......+ ..+..|...+..+++....+|||||+|.|.+++++ .++.. ..++|+|+|.|+........
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~-~~~~~-----~~~~~~i~~~h~~~~~~~~~ 141 (398)
T cd03800 74 YLPKEELW------PYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVA-LLLAR-----RLGIPLVHTFHSLGAVKRRH 141 (398)
T ss_pred CCChhhcc------hhHHHHHHHHHHHHHhcCCCccEEEEecCccchHH-HHHHh-----hcCCceEEEeecccccCCcc
Confidence 11100011 11122445555566543338999999998877653 33222 25799999999864211100
Q ss_pred hhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCC
Q 002628 687 AKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAW 766 (899)
Q Consensus 687 ~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f 766 (899)
.... ..+. ........+..+..+|.|+++|+...+. +.........++.+||||+|.+.|
T Consensus 142 ------~~~~-~~~~---------~~~~~~~~~~~~~~ad~ii~~s~~~~~~----~~~~~~~~~~~~~vi~ng~~~~~~ 201 (398)
T cd03800 142 ------LGAA-DTYE---------PARRIEAEERLLRAADRVIASTPQEAEE----LYSLYGAYPRRIRVVPPGVDLERF 201 (398)
T ss_pred ------cccc-cccc---------hhhhhhHHHHHHhhCCEEEEcCHHHHHH----HHHHccccccccEEECCCCCccce
Confidence 0000 0000 1112234566788999999999987665 212222334569999999999888
Q ss_pred CCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCC
Q 002628 767 NPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSS 844 (899)
Q Consensus 767 ~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~G 844 (899)
.|..+. ...++.++.+ +++++|+|+||+.+.||++.+++|+..+.+ .+++|+++|.|
T Consensus 202 ~~~~~~------------------~~~~~~~~~~---~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~ 260 (398)
T cd03800 202 TPYGRA------------------EARRARLLRD---PDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGP 260 (398)
T ss_pred ecccch------------------hhHHHhhccC---CCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 664210 1114445554 356899999999999999999999999875 37999999987
Q ss_pred CccCc-------c---H-----------------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 845 PVPHI-------Q---V-----------------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 845 p~~~L-------q---k-----------------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
+.... + + + .+|+.||++++||.+|+||++++|||++|+||+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~ 331 (398)
T cd03800 261 RDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVA 331 (398)
T ss_pred CCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEE
Confidence 64210 0 0 1 7899999999999999999999999999999953
No 24
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.94 E-value=4.8e-25 Score=237.17 Aligned_cols=277 Identities=18% Similarity=0.200 Sum_probs=182.2
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||+++++.+ ..||.+.++.+++++|.+.||+|+++++........ ..+ ...
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~-----~~~--------------------~~~ 51 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYD-----DEI--------------------EKL 51 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchH-----HHH--------------------HHc
Confidence 689998876 369999999999999999999999999864421100 000 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
|++++.+... . . ...+ +.+....+++ ..+|||||+|......+ +.++... +....+
T Consensus 52 ~~~~~~~~~~-----~----~-----~~~~---~~~~~~~~~~--~~~~Dvv~~~~~~~~~~-~~~~~~~----~~~~~~ 107 (358)
T cd03812 52 GGKIYYIPAR-----K----K-----NPLK---YFKKLYKLIK--KNKYDIVHVHGSSASGF-ILLAAKK----AGVKVR 107 (358)
T ss_pred CCeEEEecCC-----C----c-----cHHH---HHHHHHHHHh--cCCCCEEEEeCcchhHH-HHHHHhh----CCCCeE
Confidence 4444433210 0 0 0111 1122223333 36899999998765443 2222221 223445
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
+++.|+..+........ . .. ..+.+.....+|.++++|+..++. +... ....
T Consensus 108 v~~~~~~~~~~~~~~~~----------------~----~~--~~~~~~~~~~~~~~i~~s~~~~~~----~~~~--~~~~ 159 (358)
T cd03812 108 IAHSHNTSDSHDKKKKI----------------L----KY--KVLRKLINRLATDYLACSEEAGKW----LFGK--VKNK 159 (358)
T ss_pred EEEeccccccccccchh----------------h----HH--HHHHHHHHhcCCEEEEcCHHHHHH----HHhC--CCcc
Confidence 78888764322110000 0 00 112345567799999999987765 2111 2467
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||+|.+.|.+... .+.. ++.++.+ .++++|+|+||+.++||++.+++|+..+.
T Consensus 160 ~~~vi~ngvd~~~~~~~~~-----------------~~~~-~~~~~~~---~~~~~i~~vGr~~~~Kg~~~li~a~~~l~ 218 (358)
T cd03812 160 KFKVIPNGIDLEKFIFNEE-----------------IRKK-RRELGIL---EDKFVIGHVGRFSEQKNHEFLIEIFAELL 218 (358)
T ss_pred cEEEEeccCcHHHcCCCch-----------------hhhH-HHHcCCC---CCCEEEEEEeccccccChHHHHHHHHHHH
Confidence 8999999999987765321 1111 4455554 36789999999999999999999999997
Q ss_pred c--cCcEEEEEcCCCccC-ccH--------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccccC-C
Q 002628 833 E--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN-C 888 (899)
Q Consensus 833 e--~dvqLVIVG~Gp~~~-Lqk--------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidg-v 888 (899)
+ .+++++|+|+|+... +.. ..+|+.||++|+||.+|+||++++|||++|+||+.. +
T Consensus 219 ~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~ 298 (358)
T cd03812 219 KKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDT 298 (358)
T ss_pred HhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcC
Confidence 5 389999999988531 110 199999999999999999999999999999998544 4
Q ss_pred Ccc
Q 002628 889 EPW 891 (899)
Q Consensus 889 ~~~ 891 (899)
+|.
T Consensus 299 ~~~ 301 (358)
T cd03812 299 ITK 301 (358)
T ss_pred Cch
Confidence 444
No 25
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.93 E-value=2.1e-24 Score=230.07 Aligned_cols=251 Identities=19% Similarity=0.142 Sum_probs=168.4
Q ss_pred CeEEEEcCccCC--cccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeee
Q 002628 512 LHVIHIAAEMAP--VAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (899)
Q Consensus 512 MKILhIs~E~~P--~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~ 589 (899)
|||++|++.+.| ....||.++++..|+++|.+.||+|+|+++........ ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~~~--------------------- 55 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP----LVP--------------------- 55 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc----eee---------------------
Confidence 899999998754 22489999999999999999999999999864431100 000
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 002628 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (899)
Q Consensus 590 ~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~g 669 (899)
... ..+... + .. .......+...+..+++ ..+|||||+|.+....+ . . ...+
T Consensus 56 -~~~-~~~~~~------~------~~---~~~~~~~~~~~~~~~~~--~~~~Divh~~~~~~~~~---~-~-----~~~~ 107 (335)
T cd03802 56 -VVP-EPLRLD------A------PG---RDRAEAEALALAERALA--AGDFDIVHNHSLHLPLP---F-A-----RPLP 107 (335)
T ss_pred -ccC-CCcccc------c------ch---hhHhhHHHHHHHHHHHh--cCCCCEEEecCcccchh---h-h-----cccC
Confidence 000 000000 0 00 00001111222233443 35899999998776543 1 1 1357
Q ss_pred CeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccccc
Q 002628 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF 749 (899)
Q Consensus 670 iPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~ 749 (899)
+|+|+|+|+....... . ........+.++++|+...+. +. .
T Consensus 108 ~~~v~~~h~~~~~~~~-------------------------~------~~~~~~~~~~~~~~s~~~~~~----~~---~- 148 (335)
T cd03802 108 VPVVTTLHGPPDPELL-------------------------K------LYYAARPDVPFVSISDAQRRP----WP---P- 148 (335)
T ss_pred CCEEEEecCCCCcccc-------------------------h------HHHhhCcCCeEEEecHHHHhh----cc---c-
Confidence 8999999976421100 0 122344578899999987764 11 1
Q ss_pred CCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHH
Q 002628 750 HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIY 829 (899)
Q Consensus 750 ~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~ 829 (899)
..++.+||||+|++.|.|. ..+++.++|+||+.+.||++.+++|+.
T Consensus 149 -~~~~~vi~ngvd~~~~~~~---------------------------------~~~~~~i~~~Gr~~~~Kg~~~li~~~~ 194 (335)
T cd03802 149 -LPWVATVHNGIDLDDYPFR---------------------------------GPKGDYLLFLGRISPEKGPHLAIRAAR 194 (335)
T ss_pred -ccccEEecCCcChhhCCCC---------------------------------CCCCCEEEEEEeeccccCHHHHHHHHH
Confidence 1689999999999887652 024578999999999999999999987
Q ss_pred HhhccCcEEEEEcCCCccCc-----------cH-------------HHHHHhcCeeEEcCCc-CcChHHHHHHccCCccc
Q 002628 830 RTLELGGQFILLGSSPVPHI-----------QV-------------YPILLSSFSFLRKHIF-NICNLYIKLGQGGDLTV 884 (899)
Q Consensus 830 ~Lle~dvqLVIVG~Gp~~~L-----------qk-------------e~iyaaADIfVlPS~~-EpFGLV~LEAMg~gl~V 884 (899)
+. +++|+|+|.|+.... .. ..+|+.||++|+||.+ |+||++++|||++|+||
T Consensus 195 ~~---~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~Pv 271 (335)
T cd03802 195 RA---GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPV 271 (335)
T ss_pred hc---CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCE
Confidence 53 799999999864310 00 0789999999999985 99999999999999998
Q ss_pred cc-CCCcc
Q 002628 885 NN-NCEPW 891 (899)
Q Consensus 885 id-gv~~~ 891 (899)
+. +++|.
T Consensus 272 I~~~~~~~ 279 (335)
T cd03802 272 IAFRRGAV 279 (335)
T ss_pred EEeCCCCc
Confidence 54 34443
No 26
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.93 E-value=3e-24 Score=230.77 Aligned_cols=261 Identities=16% Similarity=0.128 Sum_probs=177.7
Q ss_pred cCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCC
Q 002628 526 KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 605 (899)
Q Consensus 526 kvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~ 605 (899)
..||++.++.+|+++|.+.||+|.|+++...... .+ ...|++++.+..
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~-----~~-----------------------~~~~~~~~~~~~---- 55 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLVA-----EL-----------------------EAEGSRHIKLPF---- 55 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHH-----HH-----------------------HhcCCeEEEccc----
Confidence 4699999999999999999999999986422110 00 012444443321
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCC
Q 002628 606 KFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA 685 (899)
Q Consensus 606 ~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~ 685 (899)
. ....+ ....+......++. ..+|||||+|++..++.+. ++.. ..++|+|+++|+....
T Consensus 56 --~-~~~~~-------~~~~~~~~l~~~~~--~~~~dii~~~~~~~~~~~~-~~~~-----~~~~~~i~~~h~~~~~--- 114 (355)
T cd03819 56 --I-SKNPL-------RILLNVARLRRLIR--EEKVDIVHARSRAPAWSAY-LAAR-----RTRPPFVTTVHGFYSV--- 114 (355)
T ss_pred --c-ccchh-------hhHHHHHHHHHHHH--HcCCCEEEECCCchhHHHH-HHHH-----hcCCCEEEEeCCchhh---
Confidence 0 00111 11111223334444 3589999999877655432 2221 2479999999976311
Q ss_pred ChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCC
Q 002628 686 PAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDA 765 (899)
Q Consensus 686 p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~ 765 (899)
.. +.+..+..+|.++++|+...+. +...+..+..++.+||||+|.+.
T Consensus 115 --~~---------------------------~~~~~~~~~~~vi~~s~~~~~~----~~~~~~~~~~k~~~i~ngi~~~~ 161 (355)
T cd03819 115 --NF---------------------------RYNAIMARGDRVIAVSNFIADH----IRENYGVDPDRIRVIPRGVDLDR 161 (355)
T ss_pred --HH---------------------------HHHHHHHhcCEEEEeCHHHHHH----HHHhcCCChhhEEEecCCccccc
Confidence 00 1123456799999999987776 22223345678999999999988
Q ss_pred CCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcC
Q 002628 766 WNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGS 843 (899)
Q Consensus 766 f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~ 843 (899)
|.+.... ......++++++++ ++.++++|+||+.++||++.+++|+..+.+ .+++++|+|.
T Consensus 162 ~~~~~~~--------------~~~~~~~~~~~~~~---~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~ 224 (355)
T cd03819 162 FDPGAVP--------------PERILALAREWPLP---KGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGD 224 (355)
T ss_pred cCccccc--------------hHHHHHHHHHcCCC---CCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 8663210 01122367788876 367899999999999999999999999876 4799999999
Q ss_pred CCccC-cc-------------H-----------HHHHHhcCeeEEcC-CcCcChHHHHHHccCCcccccCCC
Q 002628 844 SPVPH-IQ-------------V-----------YPILLSSFSFLRKH-IFNICNLYIKLGQGGDLTVNNNCE 889 (899)
Q Consensus 844 Gp~~~-Lq-------------k-----------e~iyaaADIfVlPS-~~EpFGLV~LEAMg~gl~Vidgv~ 889 (899)
|+... +. . ..+|++||++++|| .+|+||++++|||++|+||+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~ 296 (355)
T cd03819 225 AQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH 296 (355)
T ss_pred CcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC
Confidence 86431 10 0 08999999999999 799999999999999999854433
No 27
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.93 E-value=2.3e-24 Score=231.15 Aligned_cols=270 Identities=19% Similarity=0.227 Sum_probs=180.5
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
+|+++++.+ +.||.+.++..|+++|.+.||+|+|++...+..... . ..
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----~-----------~~------------- 48 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP----P-----------ID------------- 48 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc----h-----------hh-------------
Confidence 588888764 479999999999999999999999998643221100 0 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
+..+..+. +.. .. ..+......+..+++ ..+|||||+|.+++.+++.+.... ..++|+
T Consensus 49 ~~~~~~~~-------~~~-~~-------~~~~~~~~~~~~~~~--~~~pdiv~~~~~~~~~~~~l~~~~-----~~~~~~ 106 (360)
T cd04951 49 ATIILNLN-------MSK-NP-------LSFLLALWKLRKILR--QFKPDVVHAHMFHANIFARLLRLF-----LPSPPL 106 (360)
T ss_pred ccceEEec-------ccc-cc-------hhhHHHHHHHHHHHH--hcCCCEEEEcccchHHHHHHHHhh-----CCCCcE
Confidence 00011111 000 00 001111122234444 368999999998776653333222 357899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|+|.|++...+... ....+....+++.++++|+...+. +......+..
T Consensus 107 v~~~h~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~s~~~~~~----~~~~~~~~~~ 154 (360)
T cd04951 107 ICTAHSKNEGGRLR----------------------------MLAYRLTDFLSDLTTNVSKEALDY----FIASKAFNAN 154 (360)
T ss_pred EEEeeccCchhHHH----------------------------HHHHHHHhhccCceEEEcHHHHHH----HHhccCCCcc
Confidence 99999864321100 001123334578888899877665 1111113457
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||+|...|.+.. ..+..+++.++++ +++++++|+||+.+.||++.+++|+..+.
T Consensus 155 ~~~~i~ng~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~l~~g~~~~~kg~~~li~a~~~l~ 214 (360)
T cd04951 155 KSFVVYNGIDTDRFRKDP-----------------ARRLKIRNALGVK---NDTFVILAVGRLVEAKDYPNLLKAFAKLL 214 (360)
T ss_pred cEEEEccccchhhcCcch-----------------HHHHHHHHHcCcC---CCCEEEEEEeeCchhcCcHHHHHHHHHHH
Confidence 899999999988776531 1234577888886 36789999999999999999999999887
Q ss_pred cc--CcEEEEEcCCCccC-ccH--------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCC
Q 002628 833 EL--GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 833 e~--dvqLVIVG~Gp~~~-Lqk--------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv 888 (899)
+. +++|+|+|+|+... +.+ ..+|+.||++++||.+|+||++++|||++|+||+...
T Consensus 215 ~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~ 293 (360)
T cd04951 215 SDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATD 293 (360)
T ss_pred hhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEec
Confidence 53 79999999988532 111 1899999999999999999999999999999885433
No 28
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.93 E-value=1.5e-24 Score=238.03 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=175.0
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
.+|+||.+.+ ..||+++++..|+++|.+.||++.|++..... . +.. . ...
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~------~~~-----------~--------~~~ 51 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVS-A------FRK-----------R--------IQR 51 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCC-h------hHH-----------H--------HHh
Confidence 4899998865 46999999999999999999999999743211 1 000 0 011
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCe
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giP 671 (899)
.|+.++.+... ... ++ . +...+..++++ .+|||||+|+..+.. ..+... +.++|
T Consensus 52 ~~i~~~~~~~~---------~~~----~~---~-~~~~l~~~l~~--~~~Divh~~~~~~~~--~~~~~~-----~~~~~ 105 (374)
T TIGR03088 52 PDVAFYALHKQ---------PGK----DV---A-VYPQLYRLLRQ--LRPDIVHTRNLAALE--AQLPAA-----LAGVP 105 (374)
T ss_pred cCceEEEeCCC---------CCC----Ch---H-HHHHHHHHHHH--hCCCEEEEcchhHHH--HHHHHH-----hcCCC
Confidence 35555544310 000 11 1 12233455553 589999999754332 122221 12444
Q ss_pred -EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchh-hhhHHhhhccEEEEeChhhHHhhcccccccccc
Q 002628 672 -VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRIN-PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF 749 (899)
Q Consensus 672 -iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in-~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~ 749 (899)
.++|.|+..+.... .. . + ... +.+.....+|.++++|+...+. +...++.
T Consensus 106 ~~i~~~h~~~~~~~~-~~----------~-----------~--~~~~~~~~~~~~~~~~i~vs~~~~~~----~~~~~~~ 157 (374)
T TIGR03088 106 ARIHGEHGRDVFDLD-GS----------N-----------W--KYRWLRRLYRPLIHHYVAVSRDLEDW----LRGPVKV 157 (374)
T ss_pred eEEEeecCcccccch-hh----------H-----------H--HHHHHHHHHHhcCCeEEEeCHHHHHH----HHHhcCC
Confidence 45666654311000 00 0 0 011 1233345689999999987765 2222233
Q ss_pred CCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHH
Q 002628 750 HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIY 829 (899)
Q Consensus 750 ~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~ 829 (899)
+..++.+||||+|.+.|.|... .+...++....+ .+.++|+++||+.++||++.+++|+.
T Consensus 158 ~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~i~~vGrl~~~Kg~~~li~a~~ 217 (374)
T TIGR03088 158 PPAKIHQIYNGVDTERFHPSRG-----------------DRSPILPPDFFA---DESVVVGTVGRLQAVKDQPTLVRAFA 217 (374)
T ss_pred ChhhEEEeccCccccccCCCcc-----------------chhhhhHhhcCC---CCCeEEEEEecCCcccCHHHHHHHHH
Confidence 5678999999999988876421 011122222222 35689999999999999999999999
Q ss_pred Hhhcc------CcEEEEEcCCCccC-ccH--------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCc
Q 002628 830 RTLEL------GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDL 882 (899)
Q Consensus 830 ~Lle~------dvqLVIVG~Gp~~~-Lqk--------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl 882 (899)
.+.+. +++|+++|+|+... +++ ..+|++||++|+||.+|+||++++|||++|+
T Consensus 218 ~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~ 297 (374)
T TIGR03088 218 LLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGL 297 (374)
T ss_pred HHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCC
Confidence 88642 68999999997531 111 1999999999999999999999999999999
Q ss_pred cccc-CCCcc
Q 002628 883 TVNN-NCEPW 891 (899)
Q Consensus 883 ~Vid-gv~~~ 891 (899)
||+. +++|.
T Consensus 298 Pvv~s~~~g~ 307 (374)
T TIGR03088 298 PVIATAVGGN 307 (374)
T ss_pred CEEEcCCCCc
Confidence 8843 44443
No 29
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.93 E-value=1.1e-24 Score=249.60 Aligned_cols=303 Identities=13% Similarity=0.081 Sum_probs=175.8
Q ss_pred CCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCC-CeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeee
Q 002628 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKG-HLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWV 588 (899)
Q Consensus 510 ~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~G-HeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~ 588 (899)
..|||+++|..|.|. ++|+.+.+..++..|+++| |+|+||+|.++..+...+. .-++.+.+. ..+...++-|
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~---~~~~~f~~~-~~~e~~~~~~- 75 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVY---PNKITFSSP-SEQEAYVRQW- 75 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccc---cccccccCc-hhhhhhhhhh-
Confidence 459999999999998 7999999999999999999 8999999998643210000 000000000 0000001111
Q ss_pred eeeCCeeEEEeCCCCCCcccccCCCCCC-CcchhhHHHHHHHHHHHHHHhCCCceEEEECCCch-hhHHHHHHHhhccCC
Q 002628 589 STIEGLPVYFIEPHHPDKFFWRGQFYGE-HDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKG 666 (899)
Q Consensus 589 ~~veGV~V~~L~~~~p~~~F~r~~iYg~-~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~t-alVapl~~~~ya~~g 666 (899)
.+-.++++... | + ..|+. .....++.+....+.+.+. ..+|||||+|+... +.+ .. ...++ ++
T Consensus 76 ---~~~~v~r~~s~-~---~---p~yp~r~~~~~r~~~~~~~i~~~l~--~~~pDVIHv~tP~~LG~~-~~-g~~~~-~k 140 (462)
T PLN02846 76 ---LEERISFLPKF-S---I---KFYPGKFSTDKRSILPVGDISETIP--DEEADIAVLEEPEHLTWY-HH-GKRWK-TK 140 (462)
T ss_pred ---ccCeEEEeccc-c---c---ccCcccccccccccCChHHHHHHHH--hcCCCEEEEcCchhhhhH-HH-HHHHH-hc
Confidence 11223333211 0 0 11221 0000122223344555665 36899999998543 221 00 11111 11
Q ss_pred CCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccc
Q 002628 667 LNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHST 746 (899)
Q Consensus 667 L~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~i 746 (899)
. .++|.|+|.. |....+.. ..|..... + ......++++ .++|.|+++|....+.
T Consensus 141 -~-~~vV~tyHT~-y~~Y~~~~---~~g~~~~~------l----~~~~~~~~~r--~~~d~vi~pS~~~~~l-------- 194 (462)
T PLN02846 141 -F-RLVIGIVHTN-YLEYVKRE---KNGRVKAF------L----LKYINSWVVD--IYCHKVIRLSAATQDY-------- 194 (462)
T ss_pred -C-CcEEEEECCC-hHHHHHHh---ccchHHHH------H----HHHHHHHHHH--HhcCEEEccCHHHHHH--------
Confidence 2 3488899973 21111000 00000000 0 0000011111 2589999999754332
Q ss_pred cccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHH
Q 002628 747 LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRH 826 (899)
Q Consensus 747 L~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIe 826 (899)
.......+||||.+.|.|... .+++.++ +. +.-.++++|+|||.++||++.|++
T Consensus 195 ----~~~~i~~v~GVd~~~f~~~~~--------------------~~~~~~~-~~-~~~~~~~l~vGRL~~eK~~~~Li~ 248 (462)
T PLN02846 195 ----PRSIICNVHGVNPKFLEIGKL--------------------KLEQQKN-GE-QAFTKGAYYIGKMVWSKGYKELLK 248 (462)
T ss_pred ----hhCEEecCceechhhcCCCcc--------------------cHhhhcC-CC-CCcceEEEEEecCcccCCHHHHHH
Confidence 122444568999998887421 1222222 21 112457999999999999999999
Q ss_pred HHHHhhc--cCcEEEEEcCCCccC-ccH------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccc
Q 002628 827 AIYRTLE--LGGQFILLGSSPVPH-IQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 885 (899)
Q Consensus 827 Ai~~Lle--~dvqLVIVG~Gp~~~-Lqk------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vi 885 (899)
|+..+.+ .+++|+|+|+||... +++ +.+|+.+|+||+||.+|+||+|++||||+|+||+
T Consensus 249 a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVV 328 (462)
T PLN02846 249 LLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 328 (462)
T ss_pred HHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEE
Confidence 9998864 479999999998752 221 1699999999999999999999999999999984
Q ss_pred c
Q 002628 886 N 886 (899)
Q Consensus 886 d 886 (899)
.
T Consensus 329 a 329 (462)
T PLN02846 329 C 329 (462)
T ss_pred E
Confidence 3
No 30
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.93 E-value=8.3e-24 Score=227.58 Aligned_cols=276 Identities=18% Similarity=0.153 Sum_probs=172.7
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|..+++|. ..||+++++..|+++|+++||+|+|+++....... .....
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~---------------------------~~~~~ 52 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK---------------------------ETEYN 52 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc---------------------------ccccC
Confidence 689997775554 47999999999999999999999999975332110 00125
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
|++++.++.. +.... ..+.+.....+..+. ...++|+||.+....... .... . ..+.|+
T Consensus 53 ~i~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~---~~~~-~---~~~~~~ 111 (363)
T cd04955 53 GVRLIHIPAP-------EIGGL------GTIIYDILAILHALF-VKRDIDHVHALGPAIAPF---LPLL-R---LKGKKV 111 (363)
T ss_pred CceEEEcCCC-------Cccch------hhhHHHHHHHHHHHh-ccCCeEEEEecCccHHHH---HHHH-H---hcCCCE
Confidence 6676655421 00000 111111111112221 123455555444333222 1111 1 137899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|+++|+..+.... .+..... + .....+.++..+|.|+++|+...+. +...++ ..
T Consensus 112 v~~~h~~~~~~~~-------~~~~~~~-----------~--~~~~~~~~~~~ad~ii~~s~~~~~~----~~~~~~--~~ 165 (363)
T cd04955 112 VVNMDGLEWKRAK-------WGRPAKR-----------Y--LKFGEKLAVKFADRLIADSPGIKEY----LKEKYG--RD 165 (363)
T ss_pred EEEccCcceeecc-------cccchhH-----------H--HHHHHHHHHhhccEEEeCCHHHHHH----HHHhcC--CC
Confidence 9999987542110 0000000 0 0112355678899999999987776 211111 12
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
. .+||||+|...+.+. ...++.++++ +.+.++|+||+.+.||++.+++|+..+.
T Consensus 166 ~-~~i~ngv~~~~~~~~---------------------~~~~~~~~~~----~~~~i~~~G~~~~~Kg~~~li~a~~~l~ 219 (363)
T cd04955 166 S-TYIPYGADHVVSSEE---------------------DEILKKYGLE----PGRYYLLVGRIVPENNIDDLIEAFSKSN 219 (363)
T ss_pred C-eeeCCCcChhhcchh---------------------hhhHHhcCCC----CCcEEEEEecccccCCHHHHHHHHHhhc
Confidence 2 899999998765431 1234455654 3356889999999999999999999876
Q ss_pred ccCcEEEEEcCCCccC-c----cH-----------------H--HHHHhcCeeEEcCCc-CcChHHHHHHccCCcccccC
Q 002628 833 ELGGQFILLGSSPVPH-I----QV-----------------Y--PILLSSFSFLRKHIF-NICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 833 e~dvqLVIVG~Gp~~~-L----qk-----------------e--~iyaaADIfVlPS~~-EpFGLV~LEAMg~gl~Vidg 887 (899)
. +++|+|+|+|+... + .. + .+|+.||++++||.. |+||++++|||++|+||+..
T Consensus 220 ~-~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s 298 (363)
T cd04955 220 S-GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLAS 298 (363)
T ss_pred c-CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEe
Confidence 4 89999999985331 1 10 0 889999999999998 99999999999999999655
Q ss_pred CCc
Q 002628 888 CEP 890 (899)
Q Consensus 888 v~~ 890 (899)
..|
T Consensus 299 ~~~ 301 (363)
T cd04955 299 DNP 301 (363)
T ss_pred cCC
Confidence 444
No 31
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.93 E-value=1.5e-24 Score=238.31 Aligned_cols=292 Identities=18% Similarity=0.161 Sum_probs=176.1
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||+++.+.+ ..||.++++.+||++|.++||+|+|+|+.++.... ... ..+|
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----~~~-------~~~~------------ 52 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC-----FEE-------TKDG------------ 52 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc-----chh-------ccCC------------
Confidence 8999998765 46999999999999999999999999975432110 000 0011
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHH-HHH--HHhCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAAL-ELL--LQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAal-elL--rq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~ 668 (899)
++.++.+....|..++.+ +..+..+.+... .+. .....+|||||+|.+..+. ++. .. ..
T Consensus 53 -~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~--~~~-~~-----~~ 114 (392)
T cd03805 53 -TLPVRVRGDWLPRSIFGR---------FHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACV--PLL-KL-----FS 114 (392)
T ss_pred -eeEEEEEeEEEcchhhHh---------HHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHH--HHH-HH-----hc
Confidence 122322211000001111 011111111111 111 1124689999999866443 222 21 12
Q ss_pred CCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccc
Q 002628 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (899)
Q Consensus 669 giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~ 748 (899)
+.|+|+++|............+. ..+ ......+++.++..+|.|+++|+...+. +...+.
T Consensus 115 ~~~~i~~~h~~~~~~~~~~~~~~------~~~----------~~~~~~~e~~~~~~ad~ii~~s~~~~~~----~~~~~~ 174 (392)
T cd03805 115 PSKILFYCHFPDQLLAQRGSLLK------RLY----------RKPFDWLEEFTTGMADKIVVNSNFTASV----FKKTFP 174 (392)
T ss_pred CCcEEEEEecChHHhcCCCcHHH------HHH----------HHHHHHHHHHHhhCceEEEEcChhHHHH----HHHHhc
Confidence 38999999954211000000000 000 0000123466788899999999987765 211121
Q ss_pred c-CCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHH
Q 002628 749 F-HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHA 827 (899)
Q Consensus 749 ~-~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeA 827 (899)
. ...++.+||||+|.+.|.|.... ..++..+.+ ++.++|+++||+.+.||++.+++|
T Consensus 175 ~~~~~~~~vi~n~vd~~~~~~~~~~-------------------~~~~~~~~~---~~~~~i~~~grl~~~Kg~~~ll~a 232 (392)
T cd03805 175 SLAKNPREVVYPCVDTDSFESTSED-------------------PDPGLLIPK---SGKKTFLSINRFERKKNIALAIEA 232 (392)
T ss_pred ccccCCcceeCCCcCHHHcCccccc-------------------ccccccccC---CCceEEEEEeeecccCChHHHHHH
Confidence 1 22344699999999888663210 011122222 366899999999999999999999
Q ss_pred HHHhhc-----cCcEEEEEcCCCcc---------Cc----cH-------------------HHHHHhcCeeEEcCCcCcC
Q 002628 828 IYRTLE-----LGGQFILLGSSPVP---------HI----QV-------------------YPILLSSFSFLRKHIFNIC 870 (899)
Q Consensus 828 i~~Lle-----~dvqLVIVG~Gp~~---------~L----qk-------------------e~iyaaADIfVlPS~~EpF 870 (899)
+.++.. .+++|+++|+|+.. .+ .. ..+|++||++++||.+|+|
T Consensus 233 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~ 312 (392)
T cd03805 233 FAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHF 312 (392)
T ss_pred HHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCC
Confidence 999864 37999999988642 00 01 0789999999999999999
Q ss_pred hHHHHHHccCCccccc-CCCcc
Q 002628 871 NLYIKLGQGGDLTVNN-NCEPW 891 (899)
Q Consensus 871 GLV~LEAMg~gl~Vid-gv~~~ 891 (899)
|++++|||++|+||+. +++|.
T Consensus 313 g~~~lEAma~G~PvI~s~~~~~ 334 (392)
T cd03805 313 GIVPLEAMYAGKPVIACNSGGP 334 (392)
T ss_pred CchHHHHHHcCCCEEEECCCCc
Confidence 9999999999999953 44443
No 32
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.92 E-value=3.3e-24 Score=236.49 Aligned_cols=268 Identities=17% Similarity=0.194 Sum_probs=169.2
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||+|+++.+ ..||++.++.+++++|.+.||+|++++|........ .. .. +. ....
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~----~~-----------~~-----~~-~~~~ 55 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFN----VT-----------KK-----FH-NALQ 55 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHH----HH-----------HH-----hh-Hhhc
Confidence 689998864 369999999999999999999999999753221000 00 00 00 0001
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHH--HhCCCceEEEECCCchhhHHHHHHHhhccCCCCCC
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLL--QAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSA 670 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLr--q~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~gi 670 (899)
|.+. .++ .. .+. .+.......+. ....+|||||+|++....+ +.++. ..++
T Consensus 56 g~~~-~~~-----------------~~-~~~-~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~-~~~~~------~~~~ 108 (372)
T cd03792 56 GADI-ELS-----------------EE-EKE-IYLEWNEENAERPLLDLDADVVVIHDPQPLAL-PLFKK------KRGR 108 (372)
T ss_pred CCCC-CCC-----------------HH-HHH-HHHHHHHHHhccccccCCCCEEEECCCCchhH-HHhhh------cCCC
Confidence 1111 000 00 011 11110011111 1135899999999874332 22211 2378
Q ss_pred eEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccC
Q 002628 671 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFH 750 (899)
Q Consensus 671 PiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~ 750 (899)
|+|+++|+.... +... ...+.+..+..+|.+++.|+.+... ++ .
T Consensus 109 ~~i~~~H~~~~~---~~~~------------------------~~~~~~~~~~~~d~~i~~~~~~~~~---~~------~ 152 (372)
T cd03792 109 PWIWRCHIDLSS---PNRR------------------------VWDFLQPYIEDYDAAVFHLPEYVPP---QV------P 152 (372)
T ss_pred eEEEEeeeecCC---CcHH------------------------HHHHHHHHHHhCCEEeecHHHhcCC---CC------C
Confidence 999999974311 0000 0112345567789988888544432 11 2
Q ss_pred CCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHH
Q 002628 751 SKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYR 830 (899)
Q Consensus 751 ~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~ 830 (899)
..++ +||||||....... .++ ...+..+++++|++ +++++|+++||+.++||++.+++|+..
T Consensus 153 ~~~~-vipngvd~~~~~~~-------~~~-------~~~~~~~~~~~~~~---~~~~~i~~vgrl~~~Kg~~~ll~a~~~ 214 (372)
T cd03792 153 PRKV-IIPPSIDPLSGKNR-------ELS-------PADIEYILEKYGID---PERPYITQVSRFDPWKDPFGVIDAYRK 214 (372)
T ss_pred CceE-EeCCCCCCCccccC-------CCC-------HHHHHHHHHHhCCC---CCCcEEEEEeccccccCcHHHHHHHHH
Confidence 3445 99999996421110 011 12244678889987 367999999999999999999999998
Q ss_pred hhc--cCcEEEEEcCCCccC------cc----------------------HH--HHHHhcCeeEEcCCcCcChHHHHHHc
Q 002628 831 TLE--LGGQFILLGSSPVPH------IQ----------------------VY--PILLSSFSFLRKHIFNICNLYIKLGQ 878 (899)
Q Consensus 831 Lle--~dvqLVIVG~Gp~~~------Lq----------------------ke--~iyaaADIfVlPS~~EpFGLV~LEAM 878 (899)
+.+ .+++|+|+|+|+... ++ .+ .+|++||+|++||.+|+||++++|||
T Consensus 215 l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~ 294 (372)
T cd03792 215 VKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEAL 294 (372)
T ss_pred HHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHH
Confidence 875 379999999986420 00 01 78999999999999999999999999
Q ss_pred cCCccccc
Q 002628 879 GGDLTVNN 886 (899)
Q Consensus 879 g~gl~Vid 886 (899)
++|+||+.
T Consensus 295 a~G~Pvv~ 302 (372)
T cd03792 295 WKGKPVIA 302 (372)
T ss_pred HcCCCEEE
Confidence 99998854
No 33
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.92 E-value=1e-23 Score=235.41 Aligned_cols=267 Identities=10% Similarity=0.092 Sum_probs=177.5
Q ss_pred eEEEEcCccCCc--ccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeee
Q 002628 513 HVIHIAAEMAPV--AKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVST 590 (899)
Q Consensus 513 KILhIs~E~~P~--akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ 590 (899)
||++++++-.|. ...||++.+++.+++.|. ++|+|++...++....+ ..
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~--------------------------~~ 54 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYT--------------------------KV 54 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchh--------------------------hc
Confidence 799999876443 358999999999999995 39999997655422110 01
Q ss_pred eCCeeEEEeCCCC-CCcccccCCCCCCCcchhhHHHHHHHHHHHHHHh-CCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 002628 591 IEGLPVYFIEPHH-PDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (899)
Q Consensus 591 veGV~V~~L~~~~-p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~-~~kPDIIH~Hdw~talVapl~~~~ya~~gL~ 668 (899)
.+|+.++.+.... ....|.+ ++. . ....|+..++..+... ...+||||+|+... ++ ..+... ..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~--~~~----~-~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~-~~~~~~-----~~ 120 (380)
T PRK15484 55 NDNCDIHYIGFSRIYKRLFQK--WTR----L-DPLPYSQRILNIAHKFTITKDSVIVIHNSMK-LY-RQIRER-----AP 120 (380)
T ss_pred cCCCceEEEEeccccchhhhh--hhc----c-CchhHHHHHHHHHHhcCCCCCcEEEEeCcHH-hH-HHHHhh-----CC
Confidence 2445555553110 0000010 010 0 1122344444444433 35699999998443 22 122221 35
Q ss_pred CCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccc
Q 002628 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (899)
Q Consensus 669 giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~ 748 (899)
+.|+|+|+|+.. . +. .+..++.++++|...++.+. ..
T Consensus 121 ~~~~v~~~h~~~-~----~~--------------------------------~~~~~~~ii~~S~~~~~~~~----~~-- 157 (380)
T PRK15484 121 QAKLVMHMHNAF-E----PE--------------------------------LLDKNAKIIVPSQFLKKFYE----ER-- 157 (380)
T ss_pred CCCEEEEEeccc-C----hh--------------------------------HhccCCEEEEcCHHHHHHHH----hh--
Confidence 789999999752 0 00 12246889999998776521 11
Q ss_pred cCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHH
Q 002628 749 FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAI 828 (899)
Q Consensus 749 ~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi 828 (899)
.+..++.+||||+|.+.|.|.. +..+++.+|++. +.++|+|+||+.+.||++.|++|+
T Consensus 158 ~~~~~i~vIpngvd~~~~~~~~-------------------~~~~~~~~~~~~---~~~~il~~Grl~~~Kg~~~Li~A~ 215 (380)
T PRK15484 158 LPNADISIVPNGFCLETYQSNP-------------------QPNLRQQLNISP---DETVLLYAGRISPDKGILLLMQAF 215 (380)
T ss_pred CCCCCEEEecCCCCHHHcCCcc-------------------hHHHHHHhCCCC---CCeEEEEeccCccccCHHHHHHHH
Confidence 2356799999999988776531 234677888863 568899999999999999999999
Q ss_pred HHhhc--cCcEEEEEcCCCccC------cc---------------------H-H--HHHHhcCeeEEcCCc-CcChHHHH
Q 002628 829 YRTLE--LGGQFILLGSSPVPH------IQ---------------------V-Y--PILLSSFSFLRKHIF-NICNLYIK 875 (899)
Q Consensus 829 ~~Lle--~dvqLVIVG~Gp~~~------Lq---------------------k-e--~iyaaADIfVlPS~~-EpFGLV~L 875 (899)
..+.+ .+++|+|+|+|+... +. . + .+|++||+||+||.+ |+||++++
T Consensus 216 ~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~l 295 (380)
T PRK15484 216 EKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAV 295 (380)
T ss_pred HHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHH
Confidence 99865 479999999875320 10 0 1 889999999999986 99999999
Q ss_pred HHccCCcccccC
Q 002628 876 LGQGGDLTVNNN 887 (899)
Q Consensus 876 EAMg~gl~Vidg 887 (899)
|||++|+||+..
T Consensus 296 EAma~G~PVI~s 307 (380)
T PRK15484 296 EAMAAGKPVLAS 307 (380)
T ss_pred HHHHcCCCEEEe
Confidence 999999988543
No 34
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.92 E-value=7.4e-24 Score=245.49 Aligned_cols=286 Identities=19% Similarity=0.197 Sum_probs=160.0
Q ss_pred EcCccCCcccCCcHHHHHHHHHHHH-HHCCCeEEEEeeCCCCCcccccccccccceeeeeccCC-ccccceeeee--eeC
Q 002628 517 IAAEMAPVAKVGGLGDVVAGLGKAL-QKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDG-RLFKNKVWVS--TIE 592 (899)
Q Consensus 517 Is~E~~P~akvGGLg~vV~~LArAL-qk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG-~~~~~~V~~~--~ve 592 (899)
+++|..- ++||+-+|+..-|..+ .+.|-...+|-|........+++.+..-+..+...... .....+|..| .++
T Consensus 7 ~swEV~N--KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i~ 84 (590)
T cd03793 7 VAWEVAN--KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLIE 84 (590)
T ss_pred Eeehhhc--cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEcC
Confidence 5566544 6999999999888764 45788888888875532222222221110000000000 0012233333 356
Q ss_pred CeeE-EEeCCCCCCccccc--------------CCCCCCCcchhhHHHHHHHHHHHHHH-----hCCCceEEEECCCchh
Q 002628 593 GLPV-YFIEPHHPDKFFWR--------------GQFYGEHDDFRRFSFFSRAALELLLQ-----AGKQPDIIHCHDWQTA 652 (899)
Q Consensus 593 GV~V-~~L~~~~p~~~F~r--------------~~iYg~~Dd~~R~s~FsrAalelLrq-----~~~kPDIIH~Hdw~ta 652 (899)
|-|. .+++-. + +++. +.+.++. +..-..+|+.++..++.. ...++||+|+|+|+++
T Consensus 85 G~P~viL~D~~-~--~~~~~~~~~~~lW~~~~i~s~~~~~-d~nea~~fgy~~~~~i~~~~~~~~~~~~dViH~HeWm~g 160 (590)
T cd03793 85 GYPKVVLFDIG-S--AAWKLDEWKGELWELCGIGSPEGDR-ETNDAIIFGFLVAWFLGEFAEQFDDEPAVVAHFHEWQAG 160 (590)
T ss_pred CCCeEEEEeCc-h--hhhhHHHHHHHHHHHcCCCCCCCCC-cchHHHHHHHHHHHHHHHHHhhccCCCCeEEEEcchhHh
Confidence 7664 444421 1 2211 1111111 112234455555544422 1357999999999999
Q ss_pred hHHHHHHHhhccCCCCCCeEEEEecCCCCCCCC-Ch-----hhhhhcCCcccccCCcccccccccccchhhhhHHhhhcc
Q 002628 653 FVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTA-PA-----KELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSN 726 (899)
Q Consensus 653 lVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~-p~-----~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD 726 (899)
.. ..+++.. ...+|+|+|+|.+...... .. ..+.....+.. ..+...+.+..+++.+...||
T Consensus 161 ~a-~~~lK~~----~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~e-------A~~~~I~~r~~iE~~aa~~Ad 228 (590)
T cd03793 161 VG-LPLLRKR----KVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKE-------AGKRGIYHRYCIERAAAHCAH 228 (590)
T ss_pred HH-HHHHHHh----CCCCCEEEEecccccccccccCCcccchhhhhcchhhh-------hhcccchHHHHHHHHHHhhCC
Confidence 86 4444432 3578999999977643211 00 00000000000 000113455667889999999
Q ss_pred EEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcch-hhhhhcccccccchhhhHHHHHHHcCCCCCCCC
Q 002628 727 IVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDT-FLKVQYNANDLQGKAENKESIRKHLGLSSADAR 805 (899)
Q Consensus 727 ~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~-~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~ 805 (899)
.|||||+.++.+ +..+++.++++ |||||+|.+.|.+..+. .+.... .+.+ -...+..++.+++++ ++
T Consensus 229 ~fttVS~it~~E----~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~-k~ki--~~f~~~~~~~~~~~~---~d 296 (590)
T cd03793 229 VFTTVSEITAYE----AEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQS-KEKI--NEFVRGHFYGHYDFD---LD 296 (590)
T ss_pred EEEECChHHHHH----HHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHh-hhhh--hHHHHHHHhhhcCCC---CC
Confidence 999999999998 45566666666 99999999998764210 000000 0000 001133467778876 36
Q ss_pred CcEEEE-EecCCC-ccCHHHHHHHHHHhh
Q 002628 806 KPLVGC-ITRLVP-QKGVHLIRHAIYRTL 832 (899)
Q Consensus 806 kpLVgf-VGRL~~-qKGvdlLIeAi~~Ll 832 (899)
.++++| +||+.. +||+|.+|+|++++-
T Consensus 297 ~tli~f~~GR~e~~nKGiDvlIeAl~rLn 325 (590)
T cd03793 297 KTLYFFTAGRYEFSNKGADMFLEALARLN 325 (590)
T ss_pred CeEEEEEeeccccccCCHHHHHHHHHHHH
Confidence 678777 799998 999999999999875
No 35
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.92 E-value=2e-23 Score=220.68 Aligned_cols=286 Identities=18% Similarity=0.172 Sum_probs=178.4
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|++.++|. .||.+.++..|+++|.+.||+|+|+++......... .. .
T Consensus 1 kIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---------------~~------------~ 51 (375)
T cd03821 1 KILHVIPSFDPK--YGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV---------------AL------------N 51 (375)
T ss_pred CeEEEcCCCCcc--cCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh---------------hc------------c
Confidence 699999998874 799999999999999999999999997644321100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCC-chhhHHHHHHHhhccCCCCCCe
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw-~talVapl~~~~ya~~gL~giP 671 (899)
+.+........ ..... . .. ..+......++.....+|||||+|+. ............ ..++|
T Consensus 52 ~~~~~~~~~~~--~~~~~--~-------~~-~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~-----~~~~~ 114 (375)
T cd03821 52 GVPVKLFSINV--AYGLN--L-------AR-YLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAAR-----KYGIP 114 (375)
T ss_pred Cceeeecccch--hhhhh--h-------hh-hccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHH-----HhCCC
Confidence 00000000000 00000 0 00 00111111122223468999999983 322221111111 24789
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCC
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~ 751 (899)
+|+++|+.......+...+. + ........+..+..++.++++|........ .....
T Consensus 115 ~i~~~~~~~~~~~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~------~~~~~ 170 (375)
T cd03821 115 YVVSPHGMLDPWALPHKALK-------------K-----RLAWFLFERRLLQAAAAVHATSEQEAAEIR------RLGLK 170 (375)
T ss_pred EEEEccccccccccccchhh-------------h-----HHHHHHHHHHHHhcCCEEEECCHHHHHHHH------hhCCc
Confidence 99999976321110000000 0 000112235556778999999876555411 11245
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHh
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRT 831 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~L 831 (899)
.++.+||||+|.+.|.+... ... ++.++.+ .+.++|+|+||+.+.||++.+++|+..+
T Consensus 171 ~~~~vi~~~~~~~~~~~~~~------------------~~~-~~~~~~~---~~~~~i~~~G~~~~~K~~~~li~a~~~l 228 (375)
T cd03821 171 APIAVIPNGVDIPPFAALPS------------------RGR-RRKFPIL---PDKRIILFLGRLHPKKGLDLLIEAFAKL 228 (375)
T ss_pred ccEEEcCCCcChhccCcchh------------------hhh-hhhccCC---CCCcEEEEEeCcchhcCHHHHHHHHHHh
Confidence 78999999999988866321 111 5566655 3678999999999999999999999998
Q ss_pred hc--cCcEEEEEcCCCccC---cc---H-----------------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 832 LE--LGGQFILLGSSPVPH---IQ---V-----------------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 832 le--~dvqLVIVG~Gp~~~---Lq---k-----------------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
.+ .+++|+++|.++... +. . + .+|+.||++|+||.+|+||++++|||++|+||
T Consensus 229 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~Pv 308 (375)
T cd03821 229 AERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPV 308 (375)
T ss_pred hhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCE
Confidence 76 489999999875421 00 0 1 78999999999999999999999999999999
Q ss_pred ccCCCc
Q 002628 885 NNNCEP 890 (899)
Q Consensus 885 idgv~~ 890 (899)
+....|
T Consensus 309 I~~~~~ 314 (375)
T cd03821 309 VTTDKV 314 (375)
T ss_pred EEcCCC
Confidence 654433
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.92 E-value=3.5e-23 Score=230.69 Aligned_cols=288 Identities=16% Similarity=0.152 Sum_probs=173.9
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
|||+|...|++- ...||++|+++||+|+|+++...... . .
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~------------------~-------------~ 40 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPP------------------P-------------G 40 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCC------------------C-------------C
Confidence 689998887532 36799999999999999998644211 0 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHH---HHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL---LLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalel---Lrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~g 669 (899)
|++++.+.+... .....+++...+.......+++... ++..+++|||||+|...+.. ++.... +.+
T Consensus 41 ~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~---~~l~~~----~~~ 109 (396)
T cd03818 41 GVRVVRYRPPRG----PTSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGET---LFLKDV----WPD 109 (396)
T ss_pred CeeEEEecCCCC----CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchh---hhHHHh----CCC
Confidence 345554443210 0112333322333322222222222 22346789999999644322 222221 356
Q ss_pred CeEEEEecCCCC-CCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccc
Q 002628 670 ARVCFTCHNFEY-QGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (899)
Q Consensus 670 iPiV~TIHn~~f-qG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~ 748 (899)
+|+|.++|-+.. .|.. .+.++...... ....+......+....+..+|.||++|+..++. +...
T Consensus 110 ~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~----~~~~-- 174 (396)
T cd03818 110 APLIGYFEFYYRAEGAD-------VGFDPEFPPSL--DDALRLRNRNALILLALAQADAGVSPTRWQRST----FPAE-- 174 (396)
T ss_pred CCEEEEEeeeecCCCCC-------CCCCCCCCCch--hHHHHHHHhhhHhHHHHHhCCEEECCCHHHHhh----CcHh--
Confidence 899988764321 0100 01111000000 000000011112346688999999999987765 2111
Q ss_pred cCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEec-CCCccCHHHHHHH
Q 002628 749 FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITR-LVPQKGVHLIRHA 827 (899)
Q Consensus 749 ~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGR-L~~qKGvdlLIeA 827 (899)
...++.+||||+|++.|.|.... ...++...+++ ++.++|+|+|| +.++||++.+++|
T Consensus 175 -~~~ki~vI~ngvd~~~f~~~~~~-----------------~~~~~~~~~~~---~~~~~i~~vgR~l~~~Kg~~~ll~a 233 (396)
T cd03818 175 -LRSRISVIHDGIDTDRLRPDPQA-----------------RLRLPNGRVLT---PGDEVITFVARNLEPYRGFHVFMRA 233 (396)
T ss_pred -hccceEEeCCCccccccCCCchh-----------------hhcccccccCC---CCCeEEEEECCCcccccCHHHHHHH
Confidence 23789999999999998874210 01112222333 36689999998 9999999999999
Q ss_pred HHHhhc--cCcEEEEEcCCCc---------c----C----ccH----------------H--HHHHhcCeeEEcCCcCcC
Q 002628 828 IYRTLE--LGGQFILLGSSPV---------P----H----IQV----------------Y--PILLSSFSFLRKHIFNIC 870 (899)
Q Consensus 828 i~~Lle--~dvqLVIVG~Gp~---------~----~----Lqk----------------e--~iyaaADIfVlPS~~EpF 870 (899)
+..+.+ .+++|+|+|++.. . . +.. + .+|+.||++|+||..|+|
T Consensus 234 ~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~ 313 (396)
T cd03818 234 LPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVL 313 (396)
T ss_pred HHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCccccc
Confidence 998875 4899999997320 0 0 000 0 899999999999999999
Q ss_pred hHHHHHHccCCcccccC
Q 002628 871 NLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 871 GLV~LEAMg~gl~Vidg 887 (899)
|++++|||+||+||+..
T Consensus 314 ~~~llEAmA~G~PVIas 330 (396)
T cd03818 314 SWSLLEAMACGCLVVGS 330 (396)
T ss_pred chHHHHHHHCCCCEEEc
Confidence 99999999999998544
No 37
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.92 E-value=2.4e-23 Score=219.19 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=187.1
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|++.+.+ ||.+.++..|+++|.+.||+|++++......... . + ...
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---~--------------------~---~~~ 50 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---E--------------------L---EEA 50 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---H--------------------H---Hhc
Confidence 68999988754 9999999999999999999999998643211000 0 0 013
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
|++++.+... .... . ..+......+++ ..+||+||+|.+++.+++... ... ..++|+
T Consensus 51 ~i~v~~~~~~---------~~~~---~----~~~~~~~~~~~~--~~~~div~~~~~~~~~~~~~~-~~~----~~~~~~ 107 (365)
T cd03807 51 GVPVYCLGKR---------PGRP---D----PGALLRLYKLIR--RLRPDVVHTWMYHADLYGGLA-ARL----AGVPPV 107 (365)
T ss_pred CCeEEEEecc---------cccc---c----HHHHHHHHHHHH--hhCCCEEEeccccccHHHHHH-HHh----cCCCcE
Confidence 5666555421 0000 0 011122334444 358999999988766653322 221 157899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
++++|+..+... ... . . + ...+.+.....+|.++++|+...+.+ ... .....
T Consensus 108 i~~~~~~~~~~~---~~~-----~-~------------~--~~~~~~~~~~~~~~~i~~s~~~~~~~----~~~-~~~~~ 159 (365)
T cd03807 108 IWGIRHSDLDLG---KKS-----T-R------------L--VARLRRLLSSFIPLIVANSAAAAEYH----QAI-GYPPK 159 (365)
T ss_pred EEEecCCccccc---chh-----H-h------------H--HHHHHHHhccccCeEEeccHHHHHHH----HHc-CCChh
Confidence 999998753210 000 0 0 0 01122344567889999999877651 111 23457
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.++|||+|...|.+.. ..+..+++++|++. +.++|+|+||+.+.||++.+++|+..+.
T Consensus 160 ~~~vi~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 160 KIVVIPNGVDTERFSPDL-----------------DARARLREELGLPE---DTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred heeEeCCCcCHHhcCCcc-----------------cchHHHHHhcCCCC---CCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 899999999988776532 12344667888873 6688999999999999999999999887
Q ss_pred c--cCcEEEEEcCCCccC----ccH------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCC
Q 002628 833 E--LGGQFILLGSSPVPH----IQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 833 e--~dvqLVIVG~Gp~~~----Lqk------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv 888 (899)
+ .+++|+++|.|+... ... ..+|+.||++++||.+|+||++++|||++|+||+..-
T Consensus 220 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~ 299 (365)
T cd03807 220 KKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATD 299 (365)
T ss_pred HhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcC
Confidence 5 379999999986431 111 1899999999999999999999999999999995543
Q ss_pred Cc
Q 002628 889 EP 890 (899)
Q Consensus 889 ~~ 890 (899)
.|
T Consensus 300 ~~ 301 (365)
T cd03807 300 VG 301 (365)
T ss_pred CC
Confidence 33
No 38
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=4.9e-23 Score=220.63 Aligned_cols=272 Identities=17% Similarity=0.156 Sum_probs=177.1
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|++.|+|. .||.+.++.+|+++|.++||+|+|+++........ . ...
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-------------~--------------~~~ 51 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRD-------------E--------------ERN 51 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchh-------------h--------------hcc
Confidence 799999999886 79999999999999999999999998753321100 0 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
+++++.+.. +... ..+.. ...++ ..+.....+|||||+|....... ...+. . ..+.|+
T Consensus 52 ~~~~~~~~~-----~~~~-~~~~~-----~~~~~-----~~~~~~~~~~Dii~~~~~~~~~~-~~~~~--~---~~~~~~ 109 (357)
T cd03795 52 GHRVIRAPS-----LLNV-ASTPF-----SPSFF-----KQLKKLAKKADVIHLHFPNPLAD-LALLL--L---PRKKPV 109 (357)
T ss_pred CceEEEeec-----cccc-ccccc-----cHHHH-----HHHHhcCCCCCEEEEecCcchHH-HHHHH--h---ccCceE
Confidence 223333221 0000 00000 00111 11112256899999997544322 11111 1 147899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
++++|+..+.... + ......+.+..+..||.|+++|+.+.+. +.... ....
T Consensus 110 i~~~h~~~~~~~~----~--------------------~~~~~~~~~~~~~~~d~vi~~s~~~~~~----~~~~~-~~~~ 160 (357)
T cd03795 110 VVHWHSDIVKQKL----L--------------------LKLYRPLQRRFLRRADAIVATSPNYAET----SPVLR-RFRD 160 (357)
T ss_pred EEEEcChhhccch----h--------------------hhhhhHHHHHHHHhcCEEEeCcHHHHHH----HHHhc-CCcc
Confidence 9999965322110 0 0000123466788999999999988775 11111 1237
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||+|.+.|.+... ++. .....+ .+.+.|+|+||+.+.||++.+++|+.++.
T Consensus 161 ~~~~i~~gi~~~~~~~~~~-----------------~~~---~~~~~~---~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 217 (357)
T cd03795 161 KVRVIPLGLDPARYPRPDA-----------------LEE---AIWRRA---AGRPFFLFVGRLVYYKGLDVLLEAAAALP 217 (357)
T ss_pred ceEEecCCCChhhcCCcch-----------------hhh---HhhcCC---CCCcEEEEecccccccCHHHHHHHHHhcc
Confidence 8999999999988766321 000 122222 35689999999999999999999999886
Q ss_pred ccCcEEEEEcCCCccC-ccH--------------------H--HHHHhcCeeEEcCC--cCcChHHHHHHccCCcccccC
Q 002628 833 ELGGQFILLGSSPVPH-IQV--------------------Y--PILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 833 e~dvqLVIVG~Gp~~~-Lqk--------------------e--~iyaaADIfVlPS~--~EpFGLV~LEAMg~gl~Vidg 887 (899)
+++|+|+|+|+... +.+ + .+|+.||++++||. .|+||++++|||++|+||+..
T Consensus 218 --~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~ 295 (357)
T cd03795 218 --DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVIST 295 (357)
T ss_pred --CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEec
Confidence 89999999987531 110 0 89999999999996 599999999999999999654
Q ss_pred CC
Q 002628 888 CE 889 (899)
Q Consensus 888 v~ 889 (899)
-.
T Consensus 296 ~~ 297 (357)
T cd03795 296 EI 297 (357)
T ss_pred CC
Confidence 33
No 39
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-23 Score=228.49 Aligned_cols=281 Identities=19% Similarity=0.244 Sum_probs=189.9
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
++|+++++.|+|. .||.+.+++.|++-|.+.||.|.|++-.|+... ++ ++..
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~-----gi---------------------rylt 52 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRV-----GI---------------------RYLT 52 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCcc-----ce---------------------eeec
Confidence 5799999999996 799999999999999999999999998887531 11 1123
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCe
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giP 671 (899)
.|++||+++.. .+-+...++- -+..+..+ +. .++ .++..|||.|...+++. --.+. ++ +.-|.+
T Consensus 53 ~glkVyylp~~----v~~n~tT~pt--v~~~~Pll-r~--i~l---rE~I~ivhghs~fS~la-he~l~-ha--rtMGlk 116 (426)
T KOG1111|consen 53 NGLKVYYLPAV----VGYNQTTFPT--VFSDFPLL-RP--ILL---RERIEIVHGHSPFSYLA-HEALM-HA--RTMGLK 116 (426)
T ss_pred CCceEEEEeee----eeecccchhh--hhccCccc-ch--hhh---hhceEEEecCChHHHHH-HHHHH-HH--HhcCce
Confidence 56788877631 0111111110 00001111 10 122 35899999998766553 22221 11 234689
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCC
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~ 751 (899)
+|+|-|.+. |..+.... ..+ ..+...+...|++|+||..-.+.. -+.. ...+
T Consensus 117 tVfTdHSlf--Gfad~~si-~~n---------------------~ll~~sL~~id~~IcVshtskent--vlr~--~L~p 168 (426)
T KOG1111|consen 117 TVFTDHSLF--GFADIGSI-LTN---------------------KLLPLSLANIDRIICVSHTSKENT--VLRG--ALAP 168 (426)
T ss_pred EEEeccccc--cccchhhh-hhc---------------------ceeeeeecCCCcEEEEeecCCCce--EEEe--ccCH
Confidence 999999763 21111100 000 112334567899999998655430 0111 1357
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHh
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRT 831 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~L 831 (899)
.|+.+|||.++++.|.|.... -+ +.+...+.+++||.++||+|+++++++++
T Consensus 169 ~kvsvIPnAv~~~~f~P~~~~--------------------------~~--S~~i~~ivv~sRLvyrKGiDll~~iIp~v 220 (426)
T KOG1111|consen 169 AKVSVIPNAVVTHTFTPDAAD--------------------------KP--SADIITIVVASRLVYRKGIDLLLEIIPSV 220 (426)
T ss_pred hHeeeccceeeccccccCccc--------------------------cC--CCCeeEEEEEeeeeeccchHHHHHHHHHH
Confidence 899999999999999994210 01 22446789999999999999999999999
Q ss_pred hc--cCcEEEEEcCCCccC-ccH----------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCccc-c
Q 002628 832 LE--LGGQFILLGSSPVPH-IQV----------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV-N 885 (899)
Q Consensus 832 le--~dvqLVIVG~Gp~~~-Lqk----------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V-i 885 (899)
.+ .+++|+|+|+||... +++ +.+|...|||++||..|+||++++|||+||++| .
T Consensus 221 c~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVs 300 (426)
T KOG1111|consen 221 CDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVS 300 (426)
T ss_pred HhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEE
Confidence 86 489999999999541 211 099999999999999999999999999999888 5
Q ss_pred cCCCccc
Q 002628 886 NNCEPWL 892 (899)
Q Consensus 886 dgv~~~l 892 (899)
+.++|.-
T Consensus 301 TrVGGIp 307 (426)
T KOG1111|consen 301 TRVGGIP 307 (426)
T ss_pred eecCCcc
Confidence 5666643
No 40
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.90 E-value=2.2e-22 Score=213.10 Aligned_cols=287 Identities=19% Similarity=0.197 Sum_probs=183.3
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++++..|+|. .||.+.++..++++|.+.||+|+|+++......... . ..
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----------------~-----------~~ 51 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE----------------E-----------VV 51 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc----------------c-----------cc
Confidence 699999999886 799999999999999999999999998765422100 0 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
++....... . ...+ .. ..+. +.......+. ..+|||||+|+..........+.. ..++|+
T Consensus 52 ~~~~~~~~~-~---~~~~--~~------~~~~-~~~~~~~~~~--~~~~Div~~~~~~~~~~~~~~~~~-----~~~~~~ 111 (374)
T cd03817 52 VVRPFRVPT-F---KYPD--FR------LPLP-IPRALIIILK--ELGPDIVHTHTPFSLGLLGLRVAR-----KLGIPV 111 (374)
T ss_pred ccccccccc-c---hhhh--hh------cccc-HHHHHHHHHh--hcCCCEEEECCchhhhhHHHHHHH-----HcCCCE
Confidence 000000000 0 0000 00 0001 1122222233 468999999975432211112111 257999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccch-hhhhHHhhhccEEEEeChhhHHhhccccccccccCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRI-NPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~i-n~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~ 751 (899)
|+++|+... ............ . ..... .+.+..+..+|.++++|+...+. +... ...
T Consensus 112 i~~~~~~~~------~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~d~i~~~s~~~~~~----~~~~--~~~ 169 (374)
T cd03817 112 VATYHTMYE------DYTHYVPLGRLL-------A---RAVVRRKLSRRFYNRCDAVIAPSEKIADL----LREY--GVK 169 (374)
T ss_pred EEEecCCHH------HHHHHHhcccch-------h---HHHHHHHHHHHHhhhCCEEEeccHHHHHH----HHhc--CCC
Confidence 999997631 000000000000 0 00011 34567788999999999987665 1111 123
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHh
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRT 831 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~L 831 (899)
.++.++|||+|...|.+.. ....++.+++. ++.+.|+|+||+.+.||++.+++|+..+
T Consensus 170 ~~~~vi~~~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~~~i~~~G~~~~~k~~~~l~~~~~~~ 227 (374)
T cd03817 170 RPIEVIPTGIDLDRFEPVD-------------------GDDERRKLGIP---EDEPVLLYVGRLAKEKNIDFLIRAFARL 227 (374)
T ss_pred CceEEcCCccchhccCccc-------------------hhHHHHhcCCC---CCCeEEEEEeeeecccCHHHHHHHHHHH
Confidence 5689999999998776531 11225566665 3568899999999999999999999988
Q ss_pred hc--cCcEEEEEcCCCccC-cc--------------------HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 832 LE--LGGQFILLGSSPVPH-IQ--------------------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 832 le--~dvqLVIVG~Gp~~~-Lq--------------------ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
.+ .+++|+++|.|+... +. .+ .+|+.||++++||.+|++|++++|||++|+||+.
T Consensus 228 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~ 307 (374)
T cd03817 228 LKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVA 307 (374)
T ss_pred HHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEE
Confidence 75 579999999987431 10 01 8999999999999999999999999999999966
Q ss_pred CCCccc
Q 002628 887 NCEPWL 892 (899)
Q Consensus 887 gv~~~l 892 (899)
.-.|..
T Consensus 308 ~~~~~~ 313 (374)
T cd03817 308 VDAPGL 313 (374)
T ss_pred eCCCCh
Confidence 544443
No 41
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.90 E-value=2.7e-22 Score=212.27 Aligned_cols=271 Identities=20% Similarity=0.155 Sum_probs=171.6
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|++.++|. ..||.+.++..|+++|.++||+|+|+++........ .. . .
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----~~-----------~------------~ 52 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQD----KE-----------V------------I 52 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcc----cc-----------c------------c
Confidence 699999988886 479999999999999999999999999764432110 00 0 0
Q ss_pred CeeEEEe---CCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 002628 593 GLPVYFI---EPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (899)
Q Consensus 593 GV~V~~L---~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~g 669 (899)
+...... ..... .+.. ..+.. .......+......++. ..+||+||+|.+..... .++.... ..+
T Consensus 53 ~~~~~~~~~~~~~~~--~~~~-~~~~~--~~~~~~~~~~~~~~~~~--~~~~dii~~~~~~~~~~--~~~~~~~---~~~ 120 (359)
T cd03823 53 GVVVYGRPIDEVLRS--ALPR-DLFHL--SDYDNPAVVAEFARLLE--DFRPDVVHFHHLQGLGV--SILRAAR---DRG 120 (359)
T ss_pred cceeeccccccccCC--Cchh-hhhHH--HhccCHHHHHHHHHHHH--HcCCCEEEECCccchHH--HHHHHHH---hcC
Confidence 0000000 00000 0000 00000 00000111222334444 35899999998643222 1222111 246
Q ss_pred CeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccccc
Q 002628 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF 749 (899)
Q Consensus 670 iPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~ 749 (899)
+|+|+++|++.+... .. . . .....|.++++|+...+.+ ... ..
T Consensus 121 ~~~i~~~hd~~~~~~--~~----------~------~--------------~~~~~d~ii~~s~~~~~~~----~~~-~~ 163 (359)
T cd03823 121 IPIVLTLHDYWLICP--RQ----------G------L--------------FKKGGDAVIAPSRFLLDRY----VAN-GL 163 (359)
T ss_pred CCEEEEEeeeeeecc--hh----------h------h--------------hccCCCEEEEeCHHHHHHH----HHc-CC
Confidence 999999997642110 00 0 0 0111299999999877751 111 11
Q ss_pred CCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHH
Q 002628 750 HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIY 829 (899)
Q Consensus 750 ~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~ 829 (899)
...++.+||||+|...+.+... +.+ .+.++|+|+||+.+.||++.+++|+.
T Consensus 164 ~~~~~~vi~n~~~~~~~~~~~~--------------------------~~~---~~~~~i~~~G~~~~~k~~~~li~~~~ 214 (359)
T cd03823 164 FAEKISVIRNGIDLDRAKRPRR--------------------------APP---GGRLRFGFIGQLTPHKGVDLLLEAFK 214 (359)
T ss_pred CccceEEecCCcChhhcccccc--------------------------CCC---CCceEEEEEecCccccCHHHHHHHHH
Confidence 2468999999999987755210 112 35678999999999999999999999
Q ss_pred HhhccCcEEEEEcCCCccCcc------------------HH--HHHHhcCeeEEcCC-cCcChHHHHHHccCCcccccCC
Q 002628 830 RTLELGGQFILLGSSPVPHIQ------------------VY--PILLSSFSFLRKHI-FNICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 830 ~Lle~dvqLVIVG~Gp~~~Lq------------------ke--~iyaaADIfVlPS~-~EpFGLV~LEAMg~gl~Vidgv 888 (899)
.+.+.+++|+++|.|+..... .+ .+|+.||++++||. .|+||++++|||++|+||+..-
T Consensus 215 ~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~ 294 (359)
T cd03823 215 RLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASD 294 (359)
T ss_pred HHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECC
Confidence 987668999999998653211 11 89999999999998 7999999999999999885443
Q ss_pred C
Q 002628 889 E 889 (899)
Q Consensus 889 ~ 889 (899)
.
T Consensus 295 ~ 295 (359)
T cd03823 295 I 295 (359)
T ss_pred C
Confidence 3
No 42
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.90 E-value=3.5e-22 Score=238.89 Aligned_cols=295 Identities=15% Similarity=0.121 Sum_probs=171.1
Q ss_pred CCCC-eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCC------------eEEEEeeCCCCCcccccccccccceeeee
Q 002628 509 SSGL-HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGH------------LVEIVLPKYDCMQYDRIDDLRALDVVVES 575 (899)
Q Consensus 509 ~~~M-KILhIs~E~~P~akvGGLg~vV~~LArALqk~GH------------eVtVItP~Y~~~~~~~v~~L~~l~v~v~s 575 (899)
..+. ||+|+.... ..||+++++.+|+.+|.+.|. .|.|++.......... .
T Consensus 278 ~~~~~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~-----~------- 341 (694)
T PRK15179 278 ESFVGPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD-----F------- 341 (694)
T ss_pred CCCcceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcc-----h-------
Confidence 4456 999998865 469999999999999999954 3444442111000000 0
Q ss_pred ccCCccccceeeeeeeCCeeEEEeCCCCCCcccccCCCC-CCCcchhh--------HHHHHHHHHHHHHHhCCCceEEEE
Q 002628 576 YFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFY-GEHDDFRR--------FSFFSRAALELLLQAGKQPDIIHC 646 (899)
Q Consensus 576 yfdG~~~~~~V~~~~veGV~V~~L~~~~p~~~F~r~~iY-g~~Dd~~R--------~s~FsrAalelLrq~~~kPDIIH~ 646 (899)
|.. ...-.|++++.+... +. .+. ..+ +....+.+ ...+...+..++++ .+|||||+
T Consensus 342 -~~~--------~L~~~Gv~v~~l~~~-~~-~~~--~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~--~kpDIVH~ 406 (694)
T PRK15179 342 -FAA--------TLADAGIPVSVYSDM-QA-WGG--CEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS--SVPSVVHI 406 (694)
T ss_pred -HHH--------HHHhCCCeEEEeccC-Cc-cCc--ccccccchhhHHHhhhcchhHHHHHHHHHHHHHH--cCCcEEEE
Confidence 000 001246666655421 00 000 000 00000111 11223445566664 58999999
Q ss_pred CCCchhhHHHHHHHhhccCCCCCCeEEE-EecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhc
Q 002628 647 HDWQTAFVAPLYWDLYVPKGLNSARVCF-TCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFS 725 (899)
Q Consensus 647 Hdw~talVapl~~~~ya~~gL~giPiV~-TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~A 725 (899)
|...+.+++.+ ... +.++|+|+ |+|++... ..+ .. +..........+..+
T Consensus 407 h~~~a~~lg~l-Aa~-----~~gvPvIv~t~h~~~~~-~~~-~~---------------------~~~~~~~l~~~l~~~ 457 (694)
T PRK15179 407 WQDGSIFACAL-AAL-----LAGVPRIVLSVRTMPPV-DRP-DR---------------------YRVEYDIIYSELLKM 457 (694)
T ss_pred eCCcHHHHHHH-HHH-----HcCCCEEEEEeCCCccc-cch-hH---------------------HHHHHHHHHHHHHhc
Confidence 98877665432 222 24678766 66765311 000 00 000000111122334
Q ss_pred c--EEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCC
Q 002628 726 N--IVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSAD 803 (899)
Q Consensus 726 D--~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d 803 (899)
+ .++++|...++. +...++.+..++.+||||||.+.|.|... .+. .+..+.... .
T Consensus 458 ~~~i~Vs~S~~~~~~----l~~~~g~~~~kI~VI~NGVd~~~f~~~~~-----------------~~~-~~~~~~~~~-~ 514 (694)
T PRK15179 458 RGVALSSNSQFAAHR----YADWLGVDERRIPVVYNGLAPLKSVQDDA-----------------CTA-MMAQFDART-S 514 (694)
T ss_pred CCeEEEeCcHHHHHH----HHHHcCCChhHEEEECCCcCHHhcCCCch-----------------hhH-HHHhhcccc-C
Confidence 4 444555544443 11122345689999999999887765210 010 111222111 1
Q ss_pred CCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCccC-ccH--------------------HHHHHhcCe
Q 002628 804 ARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPILLSSFS 860 (899)
Q Consensus 804 ~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~~-Lqk--------------------e~iyaaADI 860 (899)
.+.++|+++||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++ ..+|+.||+
T Consensus 515 ~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv 594 (694)
T PRK15179 515 DARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNA 594 (694)
T ss_pred CCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCE
Confidence 246789999999999999999999998865 379999999998542 211 089999999
Q ss_pred eEEcCCcCcChHHHHHHccCCccccc
Q 002628 861 FLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 861 fVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
||+||.+|+||++++|||++|+||+.
T Consensus 595 ~VlpS~~Egfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 595 FLLLSRFEGLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred EEeccccccchHHHHHHHHcCCeEEE
Confidence 99999999999999999999988854
No 43
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.90 E-value=2.3e-22 Score=227.08 Aligned_cols=187 Identities=16% Similarity=0.178 Sum_probs=132.1
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~ 717 (899)
..+||+||+|.++++..+..+... +..+.|+++|+|+.+.... .... .+ ...
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~----~~~~~~~~~t~Hg~d~~~~---~~~~-------------------~~--~~~ 167 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLREL----GVLRGKIATIFHGIDISSR---EVLN-------------------HY--TPE 167 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHh----CCCCCCeEEEEcccccccc---hhhh-------------------hh--hHH
Confidence 457999999998776553333221 1234567889998642100 0000 00 012
Q ss_pred hhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHc
Q 002628 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 797 (899)
Q Consensus 718 lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~L 797 (899)
.+..+..+|.|+++|....+. +.. ++.+.+|+.+||||||.+.|.|....
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~----l~~-~g~~~~ki~vi~nGvd~~~f~~~~~~------------------------- 217 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGR----LQK-MGCPPEKIAVSRMGVDMTRFSPRPVK------------------------- 217 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHH----HHH-cCCCHHHEEEcCCCCCHHHcCCCccc-------------------------
Confidence 345577899999999987765 221 13356789999999999888653100
Q ss_pred CCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc--CcEEEEEcCCCccC-ccH--------------------H--
Q 002628 798 GLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVPH-IQV--------------------Y-- 852 (899)
Q Consensus 798 GLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~--dvqLVIVG~Gp~~~-Lqk--------------------e-- 852 (899)
. ..+...|+|+||+.++||++.+++|+..+.+. +++|+|+|+|+... +++ +
T Consensus 218 -~---~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~ 293 (406)
T PRK15427 218 -A---PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVK 293 (406)
T ss_pred -c---CCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHH
Confidence 0 11345699999999999999999999998753 79999999997531 111 1
Q ss_pred HHHHhcCeeEEcCCc------CcChHHHHHHccCCccccc
Q 002628 853 PILLSSFSFLRKHIF------NICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 853 ~iyaaADIfVlPS~~------EpFGLV~LEAMg~gl~Vid 886 (899)
.+|+.||+||+||.. |+||++++|||++|+||+.
T Consensus 294 ~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~ 333 (406)
T PRK15427 294 AMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS 333 (406)
T ss_pred HHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE
Confidence 899999999999984 9999999999999999954
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.90 E-value=5.7e-22 Score=209.92 Aligned_cols=301 Identities=15% Similarity=0.114 Sum_probs=187.3
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|+..++|. .||.+.++..++++|++.||+|+++++.......... .. .......
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------------~~------~~~~~~~ 58 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIY--------------KG------YKREEVD 58 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccc--------------cc------ceEEecC
Confidence 699999988885 4999999999999999999999999976443211000 00 0011235
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
+++++.+.... +.....+. ....+..|.......+.....+||+||+|.+......+.+... ...++|+
T Consensus 59 ~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~----~~~~~~~ 127 (394)
T cd03794 59 GVRVHRVPLPP----YKKNGLLK---RLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLA----RLKGAPF 127 (394)
T ss_pred CeEEEEEecCC----CCccchHH---HHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHH----HhcCCCE
Confidence 66666554210 11111100 1112222333333333312568999999974322211222111 1247999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|+++|+..... .. ..+...... .. ......+.+..+..+|.|+++|+...+.+ . .......
T Consensus 128 i~~~h~~~~~~-----~~-~~~~~~~~~-----~~---~~~~~~~~~~~~~~~d~vi~~s~~~~~~~----~-~~~~~~~ 188 (394)
T cd03794 128 VLEVRDLWPES-----AV-ALGLLKNGS-----LL---YRLLRKLERLIYRRADAIVVISPGMREYL----V-RRGVPPE 188 (394)
T ss_pred EEEehhhcchh-----HH-HccCccccc-----hH---HHHHHHHHHHHHhcCCEEEEECHHHHHHH----H-hcCCCcC
Confidence 99999864211 00 000000000 00 01112245677889999999999888762 1 1233567
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||+|...+.+... ... ++.++.. .+.++|+|+||+.++||++.+++|+..+.
T Consensus 189 ~~~~i~~~~~~~~~~~~~~------------------~~~-~~~~~~~---~~~~~i~~~G~~~~~k~~~~l~~~~~~l~ 246 (394)
T cd03794 189 KISVIPNGVDLELFKPPPA------------------DES-LRKELGL---DDKFVVLYAGNIGRAQGLDTLLEAAALLK 246 (394)
T ss_pred ceEEcCCCCCHHHcCCccc------------------hhh-hhhccCC---CCcEEEEEecCcccccCHHHHHHHHHHHh
Confidence 8999999999877765321 000 2233332 35688999999999999999999999987
Q ss_pred cc-CcEEEEEcCCCccC-ccH-------------------H--HHHHhcCeeEEcCCcCcC-----hHHHHHHccCCccc
Q 002628 833 EL-GGQFILLGSSPVPH-IQV-------------------Y--PILLSSFSFLRKHIFNIC-----NLYIKLGQGGDLTV 884 (899)
Q Consensus 833 e~-dvqLVIVG~Gp~~~-Lqk-------------------e--~iyaaADIfVlPS~~EpF-----GLV~LEAMg~gl~V 884 (899)
+. +++|+|+|.|+... +.. + .+|+.||++++||..|++ |++++|||++|+||
T Consensus 247 ~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pv 326 (394)
T cd03794 247 DRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPV 326 (394)
T ss_pred hcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcE
Confidence 65 89999999987531 111 1 899999999999999876 77899999999998
Q ss_pred ccC
Q 002628 885 NNN 887 (899)
Q Consensus 885 idg 887 (899)
+..
T Consensus 327 i~~ 329 (394)
T cd03794 327 LAS 329 (394)
T ss_pred EEe
Confidence 543
No 45
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.90 E-value=2.2e-22 Score=221.87 Aligned_cols=258 Identities=12% Similarity=0.118 Sum_probs=161.3
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHC--CCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~--GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~ 589 (899)
|||+++++.+ | ..||+++++..++++|.++ ||+|.++++...... .. +.... ...
T Consensus 1 mkI~~~~~~~-~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~---~~~~~---------------~~~- 57 (359)
T PRK09922 1 MKIAFIGEAV-S--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AW---LKEIK---------------YAQ- 57 (359)
T ss_pred CeeEEecccc-c--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HH---HHhcc---------------hhc-
Confidence 8999998754 3 2599999999999999999 899999987643210 00 00000 000
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCC
Q 002628 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNS 669 (899)
Q Consensus 590 ~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~g 669 (899)
....+.+. .+... .. ......+++ ..+|||||+|+..+.+++....... + ..
T Consensus 58 ~~~~~~~~---------------~~~~~---~~----~~~l~~~l~--~~~~Dii~~~~~~~~~~~~~~~~~~---~-~~ 109 (359)
T PRK09922 58 SFSNIKLS---------------FLRRA---KH----VYNFSKWLK--ETQPDIVICIDVISCLYANKARKKS---G-KQ 109 (359)
T ss_pred ccccchhh---------------hhccc---HH----HHHHHHHHH--hcCCCEEEEcCHHHHHHHHHHHHHh---C-CC
Confidence 00001100 00000 00 122234454 3689999999865544322222211 1 23
Q ss_pred CeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccccc
Q 002628 670 ARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF 749 (899)
Q Consensus 670 iPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~ 749 (899)
.+++.+.|.... .. . .. ....+..+|.++++|+...+. +.. .+.
T Consensus 110 ~~~~~~~h~~~~-----~~----------~-----------~~-----~~~~~~~~d~~i~~S~~~~~~----~~~-~~~ 153 (359)
T PRK09922 110 FKIFSWPHFSLD-----HK----------K-----------HA-----ECKKITCADYHLAISSGIKEQ----MMA-RGI 153 (359)
T ss_pred CeEEEEecCccc-----cc----------c-----------hh-----hhhhhhcCCEEEEcCHHHHHH----HHH-cCC
Confidence 466777774210 00 0 00 001135799999999988776 211 123
Q ss_pred CCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCC--CccCHHHHHHH
Q 002628 750 HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLV--PQKGVHLIRHA 827 (899)
Q Consensus 750 ~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~--~qKGvdlLIeA 827 (899)
...++.+||||+|.+.+.+.. + ...+.++++|+||+. ++||++.+++|
T Consensus 154 ~~~ki~vi~N~id~~~~~~~~-----------------------------~-~~~~~~~i~~~Grl~~~~~k~~~~l~~a 203 (359)
T PRK09922 154 SAQRISVIYNPVEIKTIIIPP-----------------------------P-ERDKPAVFLYVGRLKFEGQKNVKELFDG 203 (359)
T ss_pred CHHHEEEEcCCCCHHHccCCC-----------------------------c-ccCCCcEEEEEEEEecccCcCHHHHHHH
Confidence 456899999999965442110 0 012457899999997 46999999999
Q ss_pred HHHhhccCcEEEEEcCCCccC-ccH---------------------H---HHHHhcCeeEEcCCcCcChHHHHHHccCCc
Q 002628 828 IYRTLELGGQFILLGSSPVPH-IQV---------------------Y---PILLSSFSFLRKHIFNICNLYIKLGQGGDL 882 (899)
Q Consensus 828 i~~Lle~dvqLVIVG~Gp~~~-Lqk---------------------e---~iyaaADIfVlPS~~EpFGLV~LEAMg~gl 882 (899)
+..+.. +++|+|+|+|+... +++ + .+|+.+|++|+||.+|+||++++|||++|+
T Consensus 204 ~~~~~~-~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~ 282 (359)
T PRK09922 204 LSQTTG-EWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGI 282 (359)
T ss_pred HHhhCC-CeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCC
Confidence 998753 79999999997531 111 0 667889999999999999999999999999
Q ss_pred ccccC
Q 002628 883 TVNNN 887 (899)
Q Consensus 883 ~Vidg 887 (899)
||+..
T Consensus 283 Pvv~s 287 (359)
T PRK09922 283 PCISS 287 (359)
T ss_pred CEEEe
Confidence 98543
No 46
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.90 E-value=3e-22 Score=215.22 Aligned_cols=263 Identities=20% Similarity=0.166 Sum_probs=171.7
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||++++.. + ..||.++++..++++|.++||+|+|+++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~---------------------------------- 42 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKKA---------------------------------- 42 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecch----------------------------------
Confidence 899999763 3 36999999999999999999999999753110
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCe
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giP 671 (899)
+ . ..+. ..+|||||+|.+..+.+.+..+..+ +.++|
T Consensus 43 -------~--------~-----------------------~~~~--~~~~diih~~~~~~~~~~~~~~~~~----~~~~~ 78 (365)
T cd03825 43 -------L--------I-----------------------SKIE--IINADIVHLHWIHGGFLSIEDLSKL----LDRKP 78 (365)
T ss_pred -------h--------h-----------------------hChh--cccCCEEEEEccccCccCHHHHHHH----HcCCC
Confidence 0 0 0011 2479999999877655533333322 14799
Q ss_pred EEEEecCCCCCC---CCChh---hhhhcCCcccccCCcc-cccccccccchhhhhHHh-hhccEEEEeChhhHHhhcccc
Q 002628 672 VCFTCHNFEYQG---TAPAK---ELASCGLDVQQLNRPD-RMQDNSAHDRINPLKGAI-VFSNIVTTVSPSYAQEGGQGL 743 (899)
Q Consensus 672 iV~TIHn~~fqG---~~p~~---~L~~~GL~~~~l~~pd-rL~d~~~~~~in~lK~ai-~~AD~VItVS~sya~e~g~GL 743 (899)
+|+|+|++.... ..+.. ....|+..+.....+. .+ ....+...+..+ ..++.++++|+...+. +
T Consensus 79 ~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~s~~~~~~----~ 150 (365)
T cd03825 79 VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDL----SRWIWRRKRKAWADLNLTIVAPSRWLADC----A 150 (365)
T ss_pred EEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccH----HHHHHHHHHHHhccCCcEEEehhHHHHHH----H
Confidence 999999874211 01100 0001111110000000 00 000011111112 3467888998876665 2
Q ss_pred ccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCC--ccCH
Q 002628 744 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP--QKGV 821 (899)
Q Consensus 744 ~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~--qKGv 821 (899)
......+..++.+||||+|.+.|.|. .+...++.++++. +.++++++|+... .||+
T Consensus 151 ~~~~~~~~~~~~vi~ngi~~~~~~~~-------------------~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~K~~ 208 (365)
T cd03825 151 RSSSLFKGIPIEVIPNGIDTTIFRPR-------------------DKREARKRLGLPA---DKKIILFGAVGGTDPRKGF 208 (365)
T ss_pred HhccccCCCceEEeCCCCcccccCCC-------------------cHHHHHHHhCCCC---CCeEEEEEecCCCccccCH
Confidence 22222345789999999999888663 1344677788863 5567777777765 8999
Q ss_pred HHHHHHHHHhhc---cCcEEEEEcCCCccCc-------------c-HH---HHHHhcCeeEEcCCcCcChHHHHHHccCC
Q 002628 822 HLIRHAIYRTLE---LGGQFILLGSSPVPHI-------------Q-VY---PILLSSFSFLRKHIFNICNLYIKLGQGGD 881 (899)
Q Consensus 822 dlLIeAi~~Lle---~dvqLVIVG~Gp~~~L-------------q-ke---~iyaaADIfVlPS~~EpFGLV~LEAMg~g 881 (899)
+.+++|+..+.+ .+++++++|.++.... . .+ .+|+.||++++||.+|+||++++|||++|
T Consensus 209 ~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g 288 (365)
T cd03825 209 DELIEALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACG 288 (365)
T ss_pred HHHHHHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcC
Confidence 999999998875 5799999999864311 1 11 78999999999999999999999999999
Q ss_pred ccccc
Q 002628 882 LTVNN 886 (899)
Q Consensus 882 l~Vid 886 (899)
+||+.
T Consensus 289 ~PvI~ 293 (365)
T cd03825 289 TPVVA 293 (365)
T ss_pred CCEEE
Confidence 99964
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.89 E-value=4.5e-22 Score=211.51 Aligned_cols=282 Identities=18% Similarity=0.138 Sum_probs=180.0
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|+..|+|. .||.+.++..|+++|.++||+|+++++........ . . .
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~----~-----------~-------------~ 50 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEG----P-----------A-------------R 50 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccC----C-----------C-------------C
Confidence 699999999885 59999999999999999999999999764321100 0 0 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
.+.+..+... .+. .+.. .+..+ ......++ ..+||+||+|.+.........+.. ..++|+
T Consensus 51 ~~~~~~~~~~----~~~---~~~~--~~~~~----~~~~~~~~--~~~pdii~~~~~~~~~~~~~~~~~-----~~~~~~ 110 (364)
T cd03814 51 VVPVPSVPLP----GYP---EIRL--ALPPR----RRVRRLLD--AFAPDVVHIATPGPLGLAALRAAR-----RLGIPV 110 (364)
T ss_pred ceeecccccC----ccc---ceEe--cccch----hhHHHHHH--hcCCCEEEEeccchhhHHHHHHHH-----HcCCCE
Confidence 0111100000 000 0000 00000 11112232 368999999965432211222221 257999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
++++|+.... ........ . . ......+.+.....+|.++++|+...+.+ ......
T Consensus 111 i~~~~~~~~~------~~~~~~~~--~------~----~~~~~~~~~~~~~~~d~i~~~s~~~~~~~-------~~~~~~ 165 (364)
T cd03814 111 VTSYHTDFPE------YLRYYGLG--P------L----SWLAWAYLRWFHNRADRVLVPSPSLADEL-------RARGFR 165 (364)
T ss_pred EEEEecChHH------Hhhhcccc--h------H----hHhhHHHHHHHHHhCCEEEeCCHHHHHHH-------hccCCC
Confidence 9999975210 00000000 0 0 00002344666788999999999887641 112246
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+++||+|.+.|.|... +...++.++ . .+.++++|+||+.+.||++.+++|+..+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~-~---~~~~~i~~~G~~~~~k~~~~~i~~~~~l~ 223 (364)
T cd03814 166 RVRLWPRGVDTELFHPRRR------------------DEALRARLG-P---PDRPVLLYVGRLAPEKNLEALLDADLPLR 223 (364)
T ss_pred ceeecCCCccccccCcccc------------------cHHHHHHhC-C---CCCeEEEEEeccccccCHHHHHHHHHHhh
Confidence 7899999999988876421 122344555 2 25678999999999999999999999987
Q ss_pred c-cCcEEEEEcCCCccC-cc-------------HH---HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCCCcc
Q 002628 833 E-LGGQFILLGSSPVPH-IQ-------------VY---PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPW 891 (899)
Q Consensus 833 e-~dvqLVIVG~Gp~~~-Lq-------------ke---~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv~~~ 891 (899)
+ .+++|+|+|.|+... +. .+ .+|+.||++++||..|+||++++|||++|+||+..-.|.
T Consensus 224 ~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~ 300 (364)
T cd03814 224 RRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG 300 (364)
T ss_pred hcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC
Confidence 6 379999999986532 10 11 899999999999999999999999999999996554443
No 48
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.89 E-value=3.5e-22 Score=212.84 Aligned_cols=280 Identities=16% Similarity=0.102 Sum_probs=181.2
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++++..+.|. ..||+++++.+|+++|.+.||.|+++++.......... .. .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~---------------~~-----------~ 53 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLP---------------LR-----------A 53 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCcccccccc---------------ch-----------h
Confidence 688888888773 47999999999999999999999999987554321100 00 0
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
.... .... ... ... .++..+.......+. ..+|||||+|++..... . ..++|+
T Consensus 54 ~~~~-~~~~------~~~-~~~------~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~-----~------~~~~~~ 106 (365)
T cd03809 54 ALRL-LLRL------PRR-LLW------GLLFLLRAGDRLLLL--LLGLDLLHSPHNTAPLL-----R------LRGVPV 106 (365)
T ss_pred cccc-cccc------ccc-ccc------chhhHHHHHHHHHhh--hcCCCeeeecccccCcc-----c------CCCCCE
Confidence 0000 0000 000 000 000011111111222 25899999998664432 1 358999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|+++|++.+... +. ..+ ... ........+..+..+|.++++|+..++. +.........
T Consensus 107 i~~~hd~~~~~~-~~----~~~--~~~-----------~~~~~~~~~~~~~~~d~~i~~s~~~~~~----~~~~~~~~~~ 164 (365)
T cd03809 107 VVTIHDLIPLRF-PE----YFS--PGF-----------RRYFRRLLRRALRRADAIITVSEATKRD----LLRYLGVPPD 164 (365)
T ss_pred EEEeccchhhhC-cc----cCC--HHH-----------HHHHHHHHHHHHHHcCEEEEccHHHHHH----HHHHhCcCHH
Confidence 999998742111 00 000 000 0111234567788999999999988876 2222233467
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||+|...+.+..+ .. +...+.. .+.++|+|+||+.+.||++.+++|+..+.
T Consensus 165 ~~~vi~~~~~~~~~~~~~~-------------------~~-~~~~~~~---~~~~~i~~~G~~~~~K~~~~~l~~~~~~~ 221 (365)
T cd03809 165 KIVVIPLGVDPRFRPPPAE-------------------AE-VLRALYL---LPRPYFLYVGTIEPRKNLERLLEAFARLP 221 (365)
T ss_pred HEEeeccccCccccCCCch-------------------HH-HHHHhcC---CCCCeEEEeCCCccccCHHHHHHHHHHHH
Confidence 8999999999987765321 01 2223333 35689999999999999999999999998
Q ss_pred cc--CcEEEEEcCCCccCc---c-------------------HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 833 EL--GGQFILLGSSPVPHI---Q-------------------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 833 e~--dvqLVIVG~Gp~~~L---q-------------------ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
+. +++|+++|.++.... . .+ .+|+.||++++||.+|+||++++|||++|+||+.
T Consensus 222 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~ 301 (365)
T cd03809 222 AKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIA 301 (365)
T ss_pred HhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEe
Confidence 65 489999998754310 0 00 8999999999999999999999999999999965
Q ss_pred CCCcc
Q 002628 887 NCEPW 891 (899)
Q Consensus 887 gv~~~ 891 (899)
...|.
T Consensus 302 ~~~~~ 306 (365)
T cd03809 302 SNISS 306 (365)
T ss_pred cCCCC
Confidence 44443
No 49
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.89 E-value=1.7e-21 Score=208.67 Aligned_cols=261 Identities=16% Similarity=0.098 Sum_probs=173.5
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||+++++.|+| |.+.++..++++|.++||+|+|+++........ ... . ...
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~----------------~~~-~-------~~~ 51 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLV----------------HPE-D-------RAE 51 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCcccccc----------------ccc-c-------ccc
Confidence 69999998744 367899999999999999999999764422100 000 0 000
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
+..+. +.. .......+...+...++ ..+|||||+|.+........+... +.++|+
T Consensus 52 ~~~~~---------~~~---------~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~~-----~~~~~~ 106 (355)
T cd03799 52 LARTR---------YLA---------RSLALLAQALVLARELR--RLGIDHIHAHFGTTPATVAMLASR-----LGGIPY 106 (355)
T ss_pred ccchH---------HHH---------HHHHHHHHHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHH-----hcCCCE
Confidence 00000 000 00111112222223333 358999999987543332222222 247899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
++|+|+....... . ....+..+..+|.++++|+..++. +...+.....
T Consensus 107 ~~~~~~~~~~~~~---------------------------~-~~~~~~~~~~~~~vi~~s~~~~~~----l~~~~~~~~~ 154 (355)
T cd03799 107 SFTAHGKDIFRSP---------------------------D-AIDLDEKLARADFVVAISEYNRQQ----LIRLLGCDPD 154 (355)
T ss_pred EEEEecccccccC---------------------------c-hHHHHHHHhhCCEEEECCHHHHHH----HHHhcCCCcc
Confidence 9999975421000 0 013456678899999999998886 2222234567
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||+|.+.|.+.. ... ..+.+.|+|+||+.+.||++.+++|+..+.
T Consensus 155 ~~~vi~~~~d~~~~~~~~--------------------------~~~---~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~ 205 (355)
T cd03799 155 KIHVVHCGVDLERFPPRP--------------------------PPP---PGEPLRILSVGRLVEKKGLDYLLEALALLK 205 (355)
T ss_pred cEEEEeCCcCHHHcCCcc--------------------------ccc---cCCCeEEEEEeeeccccCHHHHHHHHHHHh
Confidence 899999999988776531 001 124578999999999999999999999987
Q ss_pred cc--CcEEEEEcCCCccC-cc--------------------HH--HHHHhcCeeEEcCCc------CcChHHHHHHccCC
Q 002628 833 EL--GGQFILLGSSPVPH-IQ--------------------VY--PILLSSFSFLRKHIF------NICNLYIKLGQGGD 881 (899)
Q Consensus 833 e~--dvqLVIVG~Gp~~~-Lq--------------------ke--~iyaaADIfVlPS~~------EpFGLV~LEAMg~g 881 (899)
+. +++|+++|.|+... +. .+ .+|+.||++++||.+ |+||++++|||++|
T Consensus 206 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G 285 (355)
T cd03799 206 DRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMG 285 (355)
T ss_pred hcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcC
Confidence 63 89999999986431 00 11 899999999999999 99999999999999
Q ss_pred cccccCC
Q 002628 882 LTVNNNC 888 (899)
Q Consensus 882 l~Vidgv 888 (899)
+||+..-
T Consensus 286 ~Pvi~~~ 292 (355)
T cd03799 286 LPVISTD 292 (355)
T ss_pred CCEEecC
Confidence 9986443
No 50
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.88 E-value=3.4e-21 Score=225.82 Aligned_cols=415 Identities=15% Similarity=0.131 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHH----Hhhhhhhh
Q 002628 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLL----IIDGWLLE 459 (899)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll----~~d~~~~~ 459 (899)
..++..+|.+|.|-+.+ ||..-++- .+-|+.|+.+|..+..|..-. .+.|-=++| |+--.+.. .+|.+
T Consensus 175 r~~~~~~~e~e~~~~~~--~~~~~~~~-~~~~~k~k~~~k~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 246 (794)
T PLN02501 175 RALKTRFRELEKRSESL--EIFGGFKN-SEFVEKLKSSLKAIYKEPQES-KDVPPLDVP-ELLAYLVRQSEPFLDQL--- 246 (794)
T ss_pred HHHHHHHHHHHhhcchH--HHhcccch-HHHHHHHHHHHHhhhcCcccc-ccCCCcchH-HHHHHHHhhccchhhhh---
Confidence 35677888999887766 78777666 556888888888887776654 555555565 33332322 12333
Q ss_pred cccChHHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhH------Hhh-------h---------hc-cCCC----CCCCC
Q 002628 460 KKLSTSEAKLLREMVWKRNGRIRDAYMECKEKNEHEAI------STF-------L---------KL-TSSS----ISSGL 512 (899)
Q Consensus 460 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------~---------~~-~~~~----~~~~M 512 (899)
-|-.+--..+++++..+.++.. .|-... .++..++ +++ + +| +.+. ..++-
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 323 (794)
T PLN02501 247 -GVRKDICDKIVESLCSKRKNQL-LLRSLS-AGESSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKHELSDGKR 323 (794)
T ss_pred -hhhHHHHHHHHHHHHhhccccc-cccccc-cccccccccccccccchhhhhhhhhccCccccCCcccCccccccccCCC
Confidence 1222233455665553222111 111110 0000000 000 0 11 1111 13346
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHC-CCeEEEEeeCCCCCcccccccccccceeeeeccCCcc---ccceeee
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK-GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRL---FKNKVWV 588 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~-GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~---~~~~V~~ 588 (899)
+|.++|+-..|+ .-|.+.--.--|.+|++. |+.|+.+.|.....+...+.. -++. |..+. ..++-|-
T Consensus 324 ~~~ivTtAslPW--mTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~---~~~~----F~~p~eQe~~ir~wl 394 (794)
T PLN02501 324 HVAIVTTASLPW--MTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYP---NNLT----FSSPEEQESYIRNWL 394 (794)
T ss_pred eEEEEEcccCcc--cccccccHHHHHHHhcccCCceEEEEEecCCccccccccC---CCcc----cCCHHHHHHHHHHHH
Confidence 899999988998 345444444445568887 799999999755322211100 0011 11110 0012222
Q ss_pred ee----eCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCch-hhH-HHHHHHhh
Q 002628 589 ST----IEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFV-APLYWDLY 662 (899)
Q Consensus 589 ~~----veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~t-alV-apl~~~~y 662 (899)
.. ..+..+.|++ + .|.. ..+.++-.-.+.+.+. .++|||||++.... +.. ....+..
T Consensus 395 ~~r~g~~~~~~i~fYp----g-~~~~---------~~~SI~p~gdI~~~L~--~f~PDVVHLatP~~LGw~~~Glr~Ar- 457 (794)
T PLN02501 395 EERIGFKADFKISFYP----G-KFSK---------ERRSIIPAGDTSQFIP--SKDADIAILEEPEHLNWYHHGKRWTD- 457 (794)
T ss_pred HHhcCCCCCceEEeec----c-hhcc---------CCccccchHHHHHHhh--ccCCCEEEECCchhhccHHHHHHHHH-
Confidence 11 1223333332 1 1111 0111111122233444 46899999997543 322 0122221
Q ss_pred ccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccc
Q 002628 663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQG 742 (899)
Q Consensus 663 a~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~G 742 (899)
. .+ |+|.++|+-. .. .+...+... ++...+.....+++. .|||.|+++|....+
T Consensus 458 ---K-l~-PVVasyHTny-~e-----Yl~~y~~g~--------L~~~llk~l~~~v~r--~hcD~VIaPS~atq~----- 511 (794)
T PLN02501 458 ---K-FN-HVVGVVHTNY-LE-----YIKREKNGA--------LQAFFVKHINNWVTR--AYCHKVLRLSAATQD----- 511 (794)
T ss_pred ---H-cC-CeEEEEeCCc-HH-----HHhHhcchh--------HHHHHHHHHHHHHHH--hhCCEEEcCCHHHHH-----
Confidence 1 34 8999999642 11 111111100 000000000011221 138999999976553
Q ss_pred cccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHH
Q 002628 743 LHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH 822 (899)
Q Consensus 743 L~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvd 822 (899)
+ +. ......||||++.|.|.. +...++.+|+.. ..+.++|+|||.++||++
T Consensus 512 L------~~-~vI~nVnGVDte~F~P~~-------------------r~~~~r~lgi~~---~~kgiLfVGRLa~EKGld 562 (794)
T PLN02501 512 L------PK-SVICNVHGVNPKFLKIGE-------------------KVAEERELGQQA---FSKGAYFLGKMVWAKGYR 562 (794)
T ss_pred h------cc-cceeecccccccccCCcc-------------------hhHHHHhcCCcc---ccCceEEEEcccccCCHH
Confidence 1 11 222223699999998852 111225667652 234589999999999999
Q ss_pred HHHHHHHHhhc--cCcEEEEEcCCCccC-ccH------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCC
Q 002628 823 LIRHAIYRTLE--LGGQFILLGSSPVPH-IQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGD 881 (899)
Q Consensus 823 lLIeAi~~Lle--~dvqLVIVG~Gp~~~-Lqk------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~g 881 (899)
.|++|+..+.. .+++|+|+|+||... ++. ..+|+++|+||+||.+|+||+|++||||+|
T Consensus 563 ~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~G 642 (794)
T PLN02501 563 ELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMG 642 (794)
T ss_pred HHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcC
Confidence 99999998764 379999999998752 221 069999999999999999999999999999
Q ss_pred cccccCCCc
Q 002628 882 LTVNNNCEP 890 (899)
Q Consensus 882 l~Vidgv~~ 890 (899)
+||+..-.|
T Consensus 643 lPVVATd~p 651 (794)
T PLN02501 643 KFVVCADHP 651 (794)
T ss_pred CCEEEecCC
Confidence 999655333
No 51
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.88 E-value=1.4e-21 Score=203.78 Aligned_cols=272 Identities=18% Similarity=0.234 Sum_probs=177.9
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||+++++.+. .||.+.++..++++|.+.||+|+|+++......... . ... ..
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~---~-----------~~~----------~~ 52 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLEL---L-----------PSN----------VK 52 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccc---c-----------ccc----------hh
Confidence 6899988653 599999999999999999999999987644321100 0 000 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCC-chhhHHHHHHHhhccCCCCCCe
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDW-QTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw-~talVapl~~~~ya~~gL~giP 671 (899)
........ . ..+. ...+......+++ ..+||+||+|.+ .+.++ ..+.. .. ++|
T Consensus 53 ~~~~~~~~--------~--~~~~-------~~~~~~~~~~~~~--~~~~dii~~~~~~~~~~~-~~~~~-----~~-~~~ 106 (353)
T cd03811 53 LIPVRVLK--------L--KSLR-------DLLAILRLRRLLR--KEKPDVVISHLTTTPNVL-ALLAA-----RL-GTK 106 (353)
T ss_pred hhceeeee--------c--cccc-------chhHHHHHHHHHH--hcCCCEEEEcCccchhHH-HHHHh-----hc-CCc
Confidence 00000000 0 0000 0112223334454 358999999987 33333 22211 12 789
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCC
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~ 751 (899)
+|+++|+.......... .. ....+..+..+|.++++|+...+. +........
T Consensus 107 ~i~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~~~~d~ii~~s~~~~~~----~~~~~~~~~ 158 (353)
T cd03811 107 LIVWEHNSLSLELKRKL----------------------RL--LLLIRKLYRRADKIVAVSEGVKED----LLKLLGIPP 158 (353)
T ss_pred eEEEEcCcchhhhccch----------------------hH--HHHHHhhccccceEEEeccchhhh----HHHhhcCCc
Confidence 99999987432110000 00 023456678899999999988776 222222235
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHh
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRT 831 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~L 831 (899)
.++.+||||+|.+.+.+... +. . .++.. .++++|+|+||+.+.||++.+++|+..+
T Consensus 159 ~~~~vi~~~~~~~~~~~~~~------------------~~-~--~~~~~---~~~~~i~~~g~~~~~k~~~~~i~~~~~l 214 (353)
T cd03811 159 DKIEVIYNPIDIEEIRALAE------------------EP-L--ELGIP---PDGPVILAVGRLSPQKGFDTLIRAFALL 214 (353)
T ss_pred cccEEecCCcChhhcCcccc------------------hh-h--hcCCC---CCceEEEEEecchhhcChHHHHHHHHHh
Confidence 78999999999887765321 00 0 22333 3668899999999999999999999998
Q ss_pred hcc--CcEEEEEcCCCccC-ccH--------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCC
Q 002628 832 LEL--GGQFILLGSSPVPH-IQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 832 le~--dvqLVIVG~Gp~~~-Lqk--------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv 888 (899)
... +++|+++|.|+... +.+ ..+|+.||++++||.+|+||++++|||++|+||+..-
T Consensus 215 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~ 294 (353)
T cd03811 215 RKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATD 294 (353)
T ss_pred hhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcC
Confidence 764 89999999987532 110 1899999999999999999999999999999996543
Q ss_pred Cc
Q 002628 889 EP 890 (899)
Q Consensus 889 ~~ 890 (899)
.|
T Consensus 295 ~~ 296 (353)
T cd03811 295 CP 296 (353)
T ss_pred CC
Confidence 33
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.88 E-value=4.7e-21 Score=199.88 Aligned_cols=281 Identities=21% Similarity=0.327 Sum_probs=182.8
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|++.++|. .||.+.++..++++|.+.||+|.++++......... . ..
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~-----~--------~~-------------- 51 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEE-----E--------VG-------------- 51 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee-----e--------ec--------------
Confidence 699999988775 799999999999999999999999998654322100 0 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
........ . .. ..+. .... ..+......++. ..+||+||+|++....... .... ..++|+
T Consensus 52 ~~~~~~~~-~-----~~--~~~~---~~~~-~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~-~~~~-----~~~~~~ 111 (374)
T cd03801 52 GIVVVRPP-P-----LL--RVRR---LLLL-LLLALRLRRLLR--RERFDVVHAHDWLALLAAA-LAAR-----LLGIPL 111 (374)
T ss_pred CcceecCC-c-----cc--ccch---hHHH-HHHHHHHHHHhh--hcCCcEEEEechhHHHHHH-HHHH-----hcCCcE
Confidence 00000000 0 00 0000 0011 112222233333 3589999999987655422 1111 358999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
++++|+..+......... . ........+..+..+|.++++|+...+. +.........
T Consensus 112 i~~~h~~~~~~~~~~~~~-----~--------------~~~~~~~~~~~~~~~d~~i~~s~~~~~~----~~~~~~~~~~ 168 (374)
T cd03801 112 VLTVHGLEFGRPGNELGL-----L--------------LKLARALERRALRRADRIIAVSEATREE----LRELGGVPPE 168 (374)
T ss_pred EEEeccchhhccccchhH-----H--------------HHHHHHHHHHHHHhCCEEEEecHHHHHH----HHhcCCCCCC
Confidence 999998753221100000 0 0011223456678899999999988776 2222222236
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.++|||+|...|.+.. ...+...+.. .+.+.|+|+||+.+.||++.+++|+..+.
T Consensus 169 ~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~~~---~~~~~i~~~g~~~~~k~~~~~i~~~~~~~ 225 (374)
T cd03801 169 KITVIPNGVDTERFRPAP--------------------RAARRRLGIP---EDEPVILFVGRLVPRKGVDLLLEALAKLR 225 (374)
T ss_pred cEEEecCcccccccCccc--------------------hHHHhhcCCc---CCCeEEEEecchhhhcCHHHHHHHHHHHh
Confidence 899999999998776531 1122233332 35688999999999999999999999887
Q ss_pred cc--CcEEEEEcCCCccC-cc--------------------HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccC
Q 002628 833 EL--GGQFILLGSSPVPH-IQ--------------------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 833 e~--dvqLVIVG~Gp~~~-Lq--------------------ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidg 887 (899)
.. +++|+++|.|+... +. .+ .+|+.||++++||.+|++|++++|||++|+||+..
T Consensus 226 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~ 305 (374)
T cd03801 226 KEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVAS 305 (374)
T ss_pred hhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEe
Confidence 64 79999999875431 10 01 89999999999999999999999999999999654
Q ss_pred C
Q 002628 888 C 888 (899)
Q Consensus 888 v 888 (899)
-
T Consensus 306 ~ 306 (374)
T cd03801 306 D 306 (374)
T ss_pred C
Confidence 4
No 53
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.88 E-value=4.9e-21 Score=204.17 Aligned_cols=267 Identities=16% Similarity=0.083 Sum_probs=170.1
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|++ ++|. .||+++++..|+++|.+.||+|+|++......... . ... ..
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~------~---------~~~----------~~ 52 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLL------Y---------GGE----------QE 52 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCccc------C---------CCc----------cc
Confidence 6899987 4564 69999999999999999999999998653321100 0 000 00
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhcc-CCCCCCe
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVP-KGLNSAR 671 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~-~gL~giP 671 (899)
+... +. .+ ....+ ......++ ..+|||||+|.|.+.+. +..+..... ....++|
T Consensus 53 ~~~~--~~------------~~----~~~~~----~~~~~~~~--~~~~dii~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 107 (366)
T cd03822 53 VVRV--IV------------LD----NPLDY----RRAARAIR--LSGPDVVVIQHEYGIFG-GEAGLYLLLLLRGLGIP 107 (366)
T ss_pred ceee--ee------------cC----CchhH----HHHHHHHh--hcCCCEEEEeecccccc-chhhHHHHHHHhhcCCC
Confidence 0000 00 00 00001 11223444 35899999998654332 221111100 0125799
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccccc-C
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF-H 750 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~-~ 750 (899)
+|+++|+..... +. .....+.+..+..+|.|+++|....+++ +.. .
T Consensus 108 ~i~~~h~~~~~~--~~------------------------~~~~~~~~~~~~~~d~ii~~s~~~~~~~-------~~~~~ 154 (366)
T cd03822 108 VVVTLHTVLLHE--PR------------------------PGDRALLRLLLRRADAVIVMSSELLRAL-------LLRAY 154 (366)
T ss_pred EEEEEecCCccc--cc------------------------hhhhHHHHHHHhcCCEEEEeeHHHHHHH-------HhhcC
Confidence 999999861100 00 0001133556778999999974333331 111 1
Q ss_pred CCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHH
Q 002628 751 SKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYR 830 (899)
Q Consensus 751 ~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~ 830 (899)
..++.+||||+|...+.+.. .. +..+.+ .+.++|+|+||+.++||++.+++|+..
T Consensus 155 ~~~~~~i~~~~~~~~~~~~~---------------------~~-~~~~~~---~~~~~i~~~G~~~~~K~~~~ll~a~~~ 209 (366)
T cd03822 155 PEKIAVIPHGVPDPPAEPPE---------------------SL-KALGGL---DGRPVLLTFGLLRPYKGLELLLEALPL 209 (366)
T ss_pred CCcEEEeCCCCcCcccCCch---------------------hh-HhhcCC---CCCeEEEEEeeccCCCCHHHHHHHHHH
Confidence 47899999999987654421 01 222222 356889999999999999999999999
Q ss_pred hhcc--CcEEEEEcCCCccC--c--------c----------------H-H--HHHHhcCeeEEcCCcC--cChHHHHHH
Q 002628 831 TLEL--GGQFILLGSSPVPH--I--------Q----------------V-Y--PILLSSFSFLRKHIFN--ICNLYIKLG 877 (899)
Q Consensus 831 Lle~--dvqLVIVG~Gp~~~--L--------q----------------k-e--~iyaaADIfVlPS~~E--pFGLV~LEA 877 (899)
+... +++|+++|.|.... . . . + .+|+.||++++||.+| +||++++||
T Consensus 210 ~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea 289 (366)
T cd03822 210 LVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYA 289 (366)
T ss_pred HHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHH
Confidence 8763 89999999875321 0 0 0 1 8999999999999999 999999999
Q ss_pred ccCCcccccCCCc
Q 002628 878 QGGDLTVNNNCEP 890 (899)
Q Consensus 878 Mg~gl~Vidgv~~ 890 (899)
|++|+||+..-.|
T Consensus 290 ~a~G~PvI~~~~~ 302 (366)
T cd03822 290 IGFGKPVISTPVG 302 (366)
T ss_pred HHcCCCEEecCCC
Confidence 9999999654444
No 54
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.88 E-value=1.3e-21 Score=212.10 Aligned_cols=270 Identities=17% Similarity=0.110 Sum_probs=168.8
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
+|+++++.|+|. .++++..++++|. ||+|.+++...+...... . ...
T Consensus 1 ~~~~~~~~~~~~-----~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~----------------~----------~~~ 47 (367)
T cd05844 1 RVLIFRPLLLAP-----SETFVRNQAEALR--RFRPVYVGGRRLGPAPLG----------------A----------LAV 47 (367)
T ss_pred CEEEEeCCCCCC-----chHHHHHHHHhcc--cCCcEEEEeeccCCCCCc----------------c----------cce
Confidence 589999988763 7899999999995 888888876533211100 0 001
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
++..+.... ...+ .. ....+..+......+++ ..+|||||+|....++.+....+ ..++|+
T Consensus 48 ~~~~~~~~~-----~~~~---~~---~~~~~~~~~~~~~~~~~--~~~~dvvh~~~~~~~~~~~~~~~------~~~~p~ 108 (367)
T cd05844 48 RLADLAGGK-----AGLR---LG---ALRLLTGSAPQLRRLLR--RHRPDLVHAHFGFDGVYALPLAR------RLGVPL 108 (367)
T ss_pred eeeecccch-----hHHH---HH---HHHhccccccHHHHHHH--hhCCCEEEeccCchHHHHHHHHH------HcCCCE
Confidence 111110000 0000 00 00000111222222343 35899999997655443222222 257999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|+|+|+......... ..+.. +.......+..+..+|.|+++|+..++. +.. .+....
T Consensus 109 i~~~h~~~~~~~~~~---~~~~~---------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~----~~~-~~~~~~ 165 (367)
T cd05844 109 VVTFHGFDATTSLAL---LLRSR---------------WALYARRRRRLARRAALFIAVSQFIRDR----LLA-LGFPPE 165 (367)
T ss_pred EEEEeCccccccchh---hcccc---------------hhHHHHHHHHHHHhcCEEEECCHHHHHH----HHH-cCCCHH
Confidence 999997642211000 00000 0001123455677899999999987775 111 123457
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.++|||+|.+.|.|.. ...+.+.|+|+||+.+.||++.+++|+..+.
T Consensus 166 ~i~vi~~g~d~~~~~~~~-------------------------------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 214 (367)
T cd05844 166 KVHVHPIGVDTAKFTPAT-------------------------------PARRPPRILFVGRFVEKKGPLLLLEAFARLA 214 (367)
T ss_pred HeEEecCCCCHHhcCCCC-------------------------------CCCCCcEEEEEEeeccccChHHHHHHHHHHH
Confidence 899999999988776521 0124578999999999999999999999887
Q ss_pred c--cCcEEEEEcCCCccC-ccH--------------------H--HHHHhcCeeEEcCC------cCcChHHHHHHccCC
Q 002628 833 E--LGGQFILLGSSPVPH-IQV--------------------Y--PILLSSFSFLRKHI------FNICNLYIKLGQGGD 881 (899)
Q Consensus 833 e--~dvqLVIVG~Gp~~~-Lqk--------------------e--~iyaaADIfVlPS~------~EpFGLV~LEAMg~g 881 (899)
+ .+++|+|+|+|+... ++. + .+|+.||++|+||. .|+||++++|||++|
T Consensus 215 ~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G 294 (367)
T cd05844 215 RRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASG 294 (367)
T ss_pred HhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcC
Confidence 5 379999999986431 110 0 88999999999997 599999999999999
Q ss_pred cccccCC
Q 002628 882 LTVNNNC 888 (899)
Q Consensus 882 l~Vidgv 888 (899)
+||+..-
T Consensus 295 ~PvI~s~ 301 (367)
T cd05844 295 VPVVATR 301 (367)
T ss_pred CCEEEeC
Confidence 9996443
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.88 E-value=7e-21 Score=198.70 Aligned_cols=258 Identities=17% Similarity=0.140 Sum_probs=171.5
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||+++++.+.| .||.++++..++++|.+.||+|+|+++....... . . ...
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~--------~--------~-----------~~~ 50 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGEPPF--------Y--------E-----------LDP 50 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc--------c--------c-----------cCC
Confidence 68999987766 5999999999999999999999999876543000 0 0 012
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
++.+..+... ...+ .+ ....+...+..+++ ..+||+||+|.+.... +..... ...+|+
T Consensus 51 ~~~~~~~~~~----~~~~--~~-------~~~~~~~~~~~~l~--~~~~d~i~~~~~~~~~----~~~~~~---~~~~~~ 108 (348)
T cd03820 51 KIKVIDLGDK----RDSK--LL-------ARFKKLRRLRKLLK--NNKPDVVISFLTSLLT----FLASLG---LKIVKL 108 (348)
T ss_pred ccceeecccc----cccc--hh-------ccccchHHHHHhhc--ccCCCEEEEcCchHHH----HHHHHh---hccccE
Confidence 2333222210 0000 00 00111122233444 3589999999876211 111111 112599
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|++.|+....... ........+..+..+|.++++|+..... .......
T Consensus 109 i~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~-------~~~~~~~ 156 (348)
T cd03820 109 IVSEHNSPDAYKK-------------------------RLRRLLLRRLLYRRADAVVVLTEEDRAL-------YYKKFNK 156 (348)
T ss_pred EEecCCCccchhh-------------------------hhHHHHHHHHHHhcCCEEEEeCHHHHHH-------hhccCCC
Confidence 9999975321100 0000113467788999999999987532 1123457
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL 832 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll 832 (899)
++.+||||++...+.+. . ..+.+.++|+||+.+.||++.+++|+..+.
T Consensus 157 ~~~vi~~~~~~~~~~~~-----------------------------~---~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~ 204 (348)
T cd03820 157 NVVVIPNPLPFPPEEPS-----------------------------S---DLKSKRILAVGRLVPQKGFDLLIEAWAKIA 204 (348)
T ss_pred CeEEecCCcChhhcccc-----------------------------C---CCCCcEEEEEEeeccccCHHHHHHHHHHHH
Confidence 89999999998755431 0 125688999999999999999999999987
Q ss_pred c--cCcEEEEEcCCCccC-cc------------------H--HHHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 833 E--LGGQFILLGSSPVPH-IQ------------------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 833 e--~dvqLVIVG~Gp~~~-Lq------------------k--e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
+ .+++|+|+|.|+... +. . ..+|+.||++++||.+|+||++++|||++|+||+.
T Consensus 205 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~ 281 (348)
T cd03820 205 KKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVIS 281 (348)
T ss_pred hcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEE
Confidence 4 489999999987542 11 0 18999999999999999999999999999999864
No 56
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.88 E-value=5.2e-21 Score=216.32 Aligned_cols=291 Identities=16% Similarity=0.067 Sum_probs=171.3
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
-||++++..+ +|.+..++.+|++|+++||+|+|+++..+... ... ...
T Consensus 4 ~~~~~~~~~~------~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~-------------------------~~~ 51 (415)
T cd03816 4 KRVCVLVLGD------IGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEI-------------------------LSN 51 (415)
T ss_pred cEEEEEEecc------cCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHH-------------------------hcC
Confidence 3677777633 55566778899999999999999987533210 000 012
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhH---HHH-HHHHHHHHHHhCCCceEEEECCCchhhH--HHHHHHhhccC
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRF---SFF-SRAALELLLQAGKQPDIIHCHDWQTAFV--APLYWDLYVPK 665 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~---s~F-srAalelLrq~~~kPDIIH~Hdw~talV--apl~~~~ya~~ 665 (899)
.|+.++.+....+ .+.+ .. ...++ .++ ...+...+.. ..+|||||+|.....+. ...++..
T Consensus 52 ~~v~~~~~~~~~~--~~~~---~~---~~~~~~~~~~~~~~~~~~~l~~-~~~~Dvi~~~~~~~~~~~~~a~~~~~---- 118 (415)
T cd03816 52 PNITIHPLPPPPQ--RLNK---LP---FLLFAPLKVLWQFFSLLWLLYK-LRPADYILIQNPPSIPTLLIAWLYCL---- 118 (415)
T ss_pred CCEEEEECCCCcc--cccc---ch---HHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeCCCCchHHHHHHHHHH----
Confidence 4666666643100 0000 00 00111 010 1111111222 35799999997443211 1222221
Q ss_pred CCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccc
Q 002628 666 GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHS 745 (899)
Q Consensus 666 gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~ 745 (899)
+.++|+|+|+|++.+. ... .+..... .+ ..-...+++...+.||.||++|+...+. +..
T Consensus 119 -~~~~~~V~~~h~~~~~------~~~-~~~~~~~-----~~----~~~~~~~e~~~~~~ad~ii~vS~~~~~~----l~~ 177 (415)
T cd03816 119 -LRRTKLIIDWHNYGYT------ILA-LKLGENH-----PL----VRLAKWYEKLFGRLADYNLCVTKAMKED----LQQ 177 (415)
T ss_pred -HhCCeEEEEcCCchHH------HHh-cccCCCC-----HH----HHHHHHHHHHHhhcCCEeeecCHHHHHH----HHh
Confidence 2578999999986421 000 0000000 00 0000123456677899999999998876 222
Q ss_pred ccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHH-------------HcCCCCCCCCCcEEEEE
Q 002628 746 TLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK-------------HLGLSSADARKPLVGCI 812 (899)
Q Consensus 746 iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk-------------~LGLs~~d~~kpLVgfV 812 (899)
.+....++.+||||. ...|.|..... .+..+++ ..++.. ++.++++++
T Consensus 178 -~~~~~~ki~vI~Ng~-~~~f~p~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~ 238 (415)
T cd03816 178 -FNNWKIRATVLYDRP-PEQFRPLPLEE---------------KHELFLKLAKTFLTRELRIGAVQLSE--ERPALLVSS 238 (415)
T ss_pred -hhccCCCeeecCCCC-HHHceeCcHHH---------------HHHHHHhccccccccccccccceecC--CCceEEEEe
Confidence 234578999999994 45676642110 0111111 112321 244678899
Q ss_pred ecCCCccCHHHHHHHHHHhhc--------cCcEEEEEcCCCccC-ccH-------------------H---HHHHhcCee
Q 002628 813 TRLVPQKGVHLIRHAIYRTLE--------LGGQFILLGSSPVPH-IQV-------------------Y---PILLSSFSF 861 (899)
Q Consensus 813 GRL~~qKGvdlLIeAi~~Lle--------~dvqLVIVG~Gp~~~-Lqk-------------------e---~iyaaADIf 861 (899)
||+.++||++.+++|+..+.+ .+++|+|+|+|+... +++ + .+|++||++
T Consensus 239 grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~ 318 (415)
T cd03816 239 TSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLG 318 (415)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEE
Confidence 999999999999999998863 269999999998531 110 1 899999999
Q ss_pred EEcCC---cCcChHHHHHHccCCcccccC
Q 002628 862 LRKHI---FNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 862 VlPS~---~EpFGLV~LEAMg~gl~Vidg 887 (899)
|+|+. .|+||++++||||+|+||+..
T Consensus 319 v~~~~~~~~~~~p~~~~Eama~G~PVI~s 347 (415)
T cd03816 319 VSLHTSSSGLDLPMKVVDMFGCGLPVCAL 347 (415)
T ss_pred EEccccccccCCcHHHHHHHHcCCCEEEe
Confidence 97643 488999999999999999653
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.87 E-value=2.1e-20 Score=195.96 Aligned_cols=268 Identities=19% Similarity=0.177 Sum_probs=175.4
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||++|++. .||.+.++..++++|.+.||+|+++++....... . ...
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-----~-----------------------~~~ 46 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEE-----L-----------------------EAL 46 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccc-----c-----------------------ccC
Confidence 68888874 4899999999999999999999999875332100 0 013
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
|+.++.++.. . .... .+..+ ........+++ ..+|||||+|.+.+.+++.+.... ..+.++
T Consensus 47 ~~~~~~~~~~------~-~~~~----~~~~~-~~~~~~~~~~~--~~~~dvv~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (359)
T cd03808 47 GVKVIPIPLD------R-RGIN----PFKDL-KALLRLYRLLR--KERPDIVHTHTPKPGILGRLAARL-----AGVPKV 107 (359)
T ss_pred CceEEecccc------c-cccC----hHhHH-HHHHHHHHHHH--hcCCCEEEEccccchhHHHHHHHH-----cCCCCE
Confidence 4444444311 0 0000 00111 11122234444 358999999987665543332221 246789
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccccc-CC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNF-HS 751 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~-~~ 751 (899)
++++|+..+....... . ......+.+..+..+|.++++|+...+.+ ...... ..
T Consensus 108 i~~~~~~~~~~~~~~~--------~-------------~~~~~~~~~~~~~~~d~ii~~s~~~~~~~----~~~~~~~~~ 162 (359)
T cd03808 108 IYTVHGLGFVFTSGGL--------K-------------RRLYLLLERLALRFTDKVIFQNEDDRDLA----LKLGIIKKK 162 (359)
T ss_pred EEEecCcchhhccchh--------H-------------HHHHHHHHHHHHhhccEEEEcCHHHHHHH----HHhcCCCcC
Confidence 9999976432110000 0 00011234666778999999999887761 111111 14
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHh
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRT 831 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~L 831 (899)
.++.+++||+|.+.+.+.... . ..+.+.|+|+||+.+.||++.+++|+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~--------------------------~---~~~~~~i~~~G~~~~~k~~~~li~~~~~l 213 (359)
T cd03808 163 KTVLIPGSGVDLDRFSPSPEP--------------------------I---PEDDPVFLFVARLLKDKGIDELLEAARIL 213 (359)
T ss_pred ceEEecCCCCChhhcCccccc--------------------------c---CCCCcEEEEEeccccccCHHHHHHHHHHH
Confidence 577888999998877553100 1 13568999999999999999999999998
Q ss_pred hc--cCcEEEEEcCCCccCc-c-----H----------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccccC
Q 002628 832 LE--LGGQFILLGSSPVPHI-Q-----V----------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 832 le--~dvqLVIVG~Gp~~~L-q-----k----------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidg 887 (899)
.+ .+++|+|+|.|+.... . . ..+|+.||++++||.+|+||++++|||++|+||+..
T Consensus 214 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s 293 (359)
T cd03808 214 KAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIAT 293 (359)
T ss_pred HhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEe
Confidence 74 4799999999875321 0 1 089999999999999999999999999999988543
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.87 E-value=2e-20 Score=196.47 Aligned_cols=286 Identities=22% Similarity=0.249 Sum_probs=182.4
Q ss_pred EEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCC
Q 002628 514 VIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEG 593 (899)
Q Consensus 514 ILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veG 593 (899)
||+|++.++|. ..||.+.++..++++|.+.||+|+|+++.......... . ... . ...
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~-----------~~~------~---~~~ 57 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDL--L-----------KGR------L---VGV 57 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhh--c-----------ccc------c---ccc
Confidence 67888877653 36999999999999999999999999976433211000 0 000 0 000
Q ss_pred eeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEE
Q 002628 594 LPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVC 673 (899)
Q Consensus 594 V~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV 673 (899)
...... +.. ............+......++.....+||+||+|.............. ..++|++
T Consensus 58 ~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~-----~~~~~~i 121 (377)
T cd03798 58 ERLPVL--------LPV---VPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR-----KLGIPLV 121 (377)
T ss_pred cccccC--------cch---hhccccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH-----hcCCCEE
Confidence 000000 000 000001111223334444555422468999999954433221222211 2468999
Q ss_pred EEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCc
Q 002628 674 FTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKK 753 (899)
Q Consensus 674 ~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~K 753 (899)
+++|+..+....... ......+..+..+|.++++|+...+. +.... ....+
T Consensus 122 ~~~h~~~~~~~~~~~------------------------~~~~~~~~~~~~~d~ii~~s~~~~~~----~~~~~-~~~~~ 172 (377)
T cd03798 122 VTLHGSDVNLLPRKR------------------------LLRALLRRALRRADAVIAVSEALADE----LKALG-IDPEK 172 (377)
T ss_pred EEeecchhcccCchh------------------------hHHHHHHHHHhcCCeEEeCCHHHHHH----HHHhc-CCCCc
Confidence 999987532110000 01223466788899999999988776 22111 35688
Q ss_pred EEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc
Q 002628 754 FVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE 833 (899)
Q Consensus 754 I~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle 833 (899)
+.++|||+|...|.+.... +. ..++.. .+.+.++|+||+.+.||++.+++|+..+.+
T Consensus 173 ~~~i~~~~~~~~~~~~~~~-----------------~~---~~~~~~---~~~~~i~~~g~~~~~k~~~~li~~~~~~~~ 229 (377)
T cd03798 173 VTVIPNGVDTERFSPADRA-----------------EA---RKLGLP---EDKKVILFVGRLVPRKGIDYLIEALARLLK 229 (377)
T ss_pred eEEcCCCcCcccCCCcchH-----------------HH---HhccCC---CCceEEEEeccCccccCHHHHHHHHHHHHh
Confidence 9999999999888764210 00 233333 356889999999999999999999999875
Q ss_pred c--CcEEEEEcCCCccC-c---------c-----------HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCC
Q 002628 834 L--GGQFILLGSSPVPH-I---------Q-----------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 834 ~--dvqLVIVG~Gp~~~-L---------q-----------ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv 888 (899)
. +++|+++|.|+... + . .+ .+|+.||++++||.+|++|++++|||++|+||+..-
T Consensus 230 ~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~ 309 (377)
T cd03798 230 KRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATD 309 (377)
T ss_pred cCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEec
Confidence 3 79999999986431 0 0 01 899999999999999999999999999999996544
Q ss_pred Cc
Q 002628 889 EP 890 (899)
Q Consensus 889 ~~ 890 (899)
.|
T Consensus 310 ~~ 311 (377)
T cd03798 310 VG 311 (377)
T ss_pred CC
Confidence 33
No 59
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.86 E-value=1.4e-20 Score=218.30 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=103.4
Q ss_pred hccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHH--cCCCC
Q 002628 724 FSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH--LGLSS 801 (899)
Q Consensus 724 ~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~--LGLs~ 801 (899)
.+| ++++|....+. +...+..+..|+.+||||||++.|.|..+. ....++. .+++
T Consensus 339 ~sd-~v~~s~~v~~~----l~~~lgip~~KI~VIyNGVD~~rf~p~~~~-----------------~~~~r~~~~~~l~- 395 (578)
T PRK15490 339 GVD-FMSNNHCVTRH----YADWLKLEAKHFQVVYNGVLPPSTEPSSEV-----------------PHKIWQQFTQKTQ- 395 (578)
T ss_pred cch-hhhccHHHHHH----HHHHhCCCHHHEEEEeCCcchhhcCccchh-----------------hHHHHHHhhhccC-
Confidence 344 56677665554 222334578899999999999988774210 0112222 3343
Q ss_pred CCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCcc-CccH--------------------HHHHHhc
Q 002628 802 ADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP-HIQV--------------------YPILLSS 858 (899)
Q Consensus 802 ~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~-~Lqk--------------------e~iyaaA 858 (899)
++.++|+++||+.++||+..+++|+..+.+ .+++|+|+|+|+.. .++. ..+|+++
T Consensus 396 --~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaA 473 (578)
T PRK15490 396 --DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKM 473 (578)
T ss_pred --CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhC
Confidence 245799999999999999999999988765 37999999999864 1211 0889999
Q ss_pred CeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 859 FSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 859 DIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
|+||+||.+|+||++++|||++|+||+.
T Consensus 474 DVfVlPS~~EGfp~vlLEAMA~GlPVVA 501 (578)
T PRK15490 474 NVFILFSRYEGLPNVLIEAQMVGVPVIS 501 (578)
T ss_pred CEEEEcccccCccHHHHHHHHhCCCEEE
Confidence 9999999999999999999999998853
No 60
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.85 E-value=5.7e-20 Score=208.53 Aligned_cols=300 Identities=17% Similarity=0.087 Sum_probs=173.8
Q ss_pred cCCcccCC-cHHHHHHHHHHHHHHC--CCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEE
Q 002628 521 MAPVAKVG-GLGDVVAGLGKALQKK--GHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVY 597 (899)
Q Consensus 521 ~~P~akvG-GLg~vV~~LArALqk~--GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~ 597 (899)
+.|.+..| |.++++.+.+.+|++. ||+|+|+|..+....... +... ...|. .....+++++
T Consensus 6 ~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~---l~~~----~~~f~---------~~~~~~~~~~ 69 (419)
T cd03806 6 FHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEI---LEKV----ESRFN---------IELDRPRIVF 69 (419)
T ss_pred ECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHH---HHHH----HHhcC---------eecCCCceEE
Confidence 47777777 9999999999999999 899999998766432110 1000 00011 0112344433
Q ss_pred EeC-CCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHh-CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEE
Q 002628 598 FIE-PHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQA-GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFT 675 (899)
Q Consensus 598 ~L~-~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~-~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~T 675 (899)
++. .. .+.. +..|+.. ..+..+...++..++.. +..||||-.|..++..+ |+. .. +.++|+|+-
T Consensus 70 ~~~~~~---~~~~-~~~~~r~---~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~-~~~-~~-----~~~~~~i~y 135 (419)
T cd03806 70 FLLKYR---KLVE-ASTYPRF---TLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTY-PLV-RL-----LGGCPVGAY 135 (419)
T ss_pred EEecce---eeec-cccCCce---eeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHH-HHH-HH-----hcCCeEEEE
Confidence 321 00 0111 1122210 01111112222222222 45899998885333222 222 22 247899999
Q ss_pred ecCCCCCCCCChhhhh--hcCCcccccCCcccccccc--------cccch-hhhhHHhhhccEEEEeChhhHHhhccccc
Q 002628 676 CHNFEYQGTAPAKELA--SCGLDVQQLNRPDRMQDNS--------AHDRI-NPLKGAIVFSNIVTTVSPSYAQEGGQGLH 744 (899)
Q Consensus 676 IHn~~fqG~~p~~~L~--~~GL~~~~l~~pdrL~d~~--------~~~~i-n~lK~ai~~AD~VItVS~sya~e~g~GL~ 744 (899)
+|-.. .+.+.+. .+|... +.+...+..+. ++..+ .+++.+...||.|+++|....+. +.
T Consensus 136 ~h~P~----~~~d~l~~~~~~~~~--~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~----~~ 205 (419)
T cd03806 136 VHYPT----ISTDMLQKVRSREAS--YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNH----IR 205 (419)
T ss_pred ecCCc----chHHHHHHHhhcccc--ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHH----HH
Confidence 99221 1112221 111100 00000000000 01111 24577788999999999987775 22
Q ss_pred cccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHH
Q 002628 745 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 824 (899)
Q Consensus 745 ~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlL 824 (899)
..+.. ..++.+||||+|++.|.|... .. ..+.++|+|+||+.++||++.+
T Consensus 206 ~~~~~-~~~~~vi~~gvd~~~~~~~~~--------------------------~~---~~~~~~il~vgr~~~~K~~~~l 255 (419)
T cd03806 206 SLWKR-NTKPSIVYPPCDVEELLKLPL--------------------------DE---KTRENQILSIAQFRPEKNHPLQ 255 (419)
T ss_pred HHhCc-CCCcEEEcCCCCHHHhccccc--------------------------cc---ccCCcEEEEEEeecCCCCHHHH
Confidence 22221 247899999999887755210 00 1245789999999999999999
Q ss_pred HHHHHHhhcc-------CcEEEEEcCCCccC-------ccH--------------------H--HHHHhcCeeEEcCCcC
Q 002628 825 RHAIYRTLEL-------GGQFILLGSSPVPH-------IQV--------------------Y--PILLSSFSFLRKHIFN 868 (899)
Q Consensus 825 IeAi~~Lle~-------dvqLVIVG~Gp~~~-------Lqk--------------------e--~iyaaADIfVlPS~~E 868 (899)
++|++.+.+. +++|+|+|+|...+ +++ + .+|+.||++|+||..|
T Consensus 256 i~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E 335 (419)
T cd03806 256 LRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNE 335 (419)
T ss_pred HHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccC
Confidence 9999998752 58999999874321 110 0 8999999999999999
Q ss_pred cChHHHHHHccCCccc-ccCCCc
Q 002628 869 ICNLYIKLGQGGDLTV-NNNCEP 890 (899)
Q Consensus 869 pFGLV~LEAMg~gl~V-idgv~~ 890 (899)
+||++++|||++|+|| ..++.|
T Consensus 336 ~Fgi~~lEAMa~G~pvIa~~~gg 358 (419)
T cd03806 336 HFGIGVVEYMAAGLIPLAHASGG 358 (419)
T ss_pred CcccHHHHHHHcCCcEEEEcCCC
Confidence 9999999999999865 334434
No 61
>PLN02275 transferase, transferring glycosyl groups
Probab=99.84 E-value=1.9e-19 Score=200.52 Aligned_cols=277 Identities=14% Similarity=0.026 Sum_probs=161.1
Q ss_pred CCcHHHHHHHHHHHHHHCCC-eEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCC
Q 002628 527 VGGLGDVVAGLGKALQKKGH-LVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPD 605 (899)
Q Consensus 527 vGGLg~vV~~LArALqk~GH-eVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~ 605 (899)
-+|.+..+..++..|.++|| +|+|++...+....+ .....|++++.++. +.
T Consensus 14 ~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~--------------------------~~~~~~v~v~r~~~--~~ 65 (371)
T PLN02275 14 DFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPA--------------------------LLNHPSIHIHLMVQ--PR 65 (371)
T ss_pred CCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHH--------------------------HhcCCcEEEEECCC--cc
Confidence 36778889999999999886 799998543211000 00124677776642 10
Q ss_pred cccccCCCCCCC-cchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhh--HHHHHHHhhccCCCCCCeEEEEecCCCCC
Q 002628 606 KFFWRGQFYGEH-DDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAF--VAPLYWDLYVPKGLNSARVCFTCHNFEYQ 682 (899)
Q Consensus 606 ~~F~r~~iYg~~-Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~tal--Vapl~~~~ya~~gL~giPiV~TIHn~~fq 682 (899)
.......+... ..+.....+...++..+.....+|||||+|+..... ++..+... +.++|+|+|+|++.+.
T Consensus 66 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~-----~~~~p~v~~~h~~~~~ 139 (371)
T PLN02275 66 -LLQRLPRVLYALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW-----LRRAKFVIDWHNFGYT 139 (371)
T ss_pred -cccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH-----HhCCCEEEEcCCccHH
Confidence 01000000000 000001001122223222225799999999754321 11112221 2478999999986311
Q ss_pred CCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCcc
Q 002628 683 GTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGID 762 (899)
Q Consensus 683 G~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID 762 (899)
....|...... + ..-...+++...+.+|.|+++|+.+.+. +....+ .++.+||||+
T Consensus 140 -------~~~~~~~~~~~-----~----~~~~~~~e~~~~~~ad~ii~~S~~~~~~----l~~~~g---~~i~vi~n~~- 195 (371)
T PLN02275 140 -------LLALSLGRSHP-----L----VRLYRWYERHYGKMADGHLCVTKAMQHE----LDQNWG---IRATVLYDQP- 195 (371)
T ss_pred -------HHhcccCCCCH-----H----HHHHHHHHHHHHhhCCEEEECCHHHHHH----HHHhcC---CCeEEECCCC-
Confidence 00011100000 0 0001123567778899999999998876 211111 1278999995
Q ss_pred CCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh----------
Q 002628 763 TDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL---------- 832 (899)
Q Consensus 763 ~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll---------- 832 (899)
.+.|.|.... .++. .....+++++||+.++||++.+++|+..+.
T Consensus 196 ~~~f~~~~~~------------------------~~~~--~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~ 249 (371)
T PLN02275 196 PEFFRPASLE------------------------IRLR--PNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNES 249 (371)
T ss_pred HHHcCcCCch------------------------hccc--CCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccc
Confidence 4667663110 0011 113357889999999999999999998763
Q ss_pred ---------ccCcEEEEEcCCCccC-ccH-------------------H---HHHHhcCeeEEcC--C-cCcChHHHHHH
Q 002628 833 ---------ELGGQFILLGSSPVPH-IQV-------------------Y---PILLSSFSFLRKH--I-FNICNLYIKLG 877 (899)
Q Consensus 833 ---------e~dvqLVIVG~Gp~~~-Lqk-------------------e---~iyaaADIfVlPS--~-~EpFGLV~LEA 877 (899)
..+++|+|+|+|+... +++ + .+|++||+||+|+ . .|+||++++||
T Consensus 250 ~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 250 DSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred cccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 1379999999998642 111 1 8899999999874 2 48999999999
Q ss_pred ccCCcccccC
Q 002628 878 QGGDLTVNNN 887 (899)
Q Consensus 878 Mg~gl~Vidg 887 (899)
||+|+||+..
T Consensus 330 mA~G~PVVa~ 339 (371)
T PLN02275 330 FGCGLPVCAV 339 (371)
T ss_pred HHCCCCEEEe
Confidence 9999999543
No 62
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.83 E-value=2.5e-20 Score=208.15 Aligned_cols=204 Identities=11% Similarity=0.052 Sum_probs=131.2
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~ 717 (899)
..++|+||+|....+. +.. ....++|+|++.|+....- + .......+.+...+. +.+ ......+
T Consensus 102 ~~~~D~v~~~~~~~~~----~~~----~~~~~~p~i~~~~d~~~~~-~-~~~~~~~~~~~~~~~---~~~---~~~~~~~ 165 (397)
T TIGR03087 102 AEPVDAIVVFSSAMAQ----YVT----PHVRGVPRIVDFVDVDSDK-W-LQYARTKRWPLRWIY---RRE---GRLLLAY 165 (397)
T ss_pred hCCCCEEEEeccccce----ecc----ccccCCCeEeehhhHHHHH-H-HHHHhccCcchhHHH---HHH---HHHHHHH
Confidence 3689999998643221 111 0135789999999864110 0 000000000000000 000 0001235
Q ss_pred hhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHc
Q 002628 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 797 (899)
Q Consensus 718 lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~L 797 (899)
++..+..+|.|+++|+..++. +.........++.+||||+|.+.|.|.... .-
T Consensus 166 e~~~~~~ad~vi~~S~~~~~~----l~~~~~~~~~~v~vipngvd~~~f~~~~~~-----------------------~~ 218 (397)
T TIGR03087 166 ERAIAARFDAATFVSRAEAEL----FRRLAPEAAGRITAFPNGVDADFFSPDRDY-----------------------PN 218 (397)
T ss_pred HHHHHhhCCeEEEcCHHHHHH----HHHhCCCCCCCeEEeecccchhhcCCCccc-----------------------cC
Confidence 677888999999999988776 221212235689999999999988764210 00
Q ss_pred CCCCCCCCCcEEEEEecCCCccCHHHHH----HHHHHhhc--cCcEEEEEcCCCccCccH----------------HHHH
Q 002628 798 GLSSADARKPLVGCITRLVPQKGVHLIR----HAIYRTLE--LGGQFILLGSSPVPHIQV----------------YPIL 855 (899)
Q Consensus 798 GLs~~d~~kpLVgfVGRL~~qKGvdlLI----eAi~~Lle--~dvqLVIVG~Gp~~~Lqk----------------e~iy 855 (899)
.++ ++.++|+|+||+.+.||++.++ ++++.+.+ .+++|+|+|+|+...+.. ..+|
T Consensus 219 ~~~---~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~~~~~l~~~~~V~~~G~v~~~~~~~ 295 (397)
T TIGR03087 219 PYP---PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPSPAVRALAALPGVTVTGSVADVRPYL 295 (397)
T ss_pred CCC---CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCChHHHHHhccCCCeEEeeecCCHHHHH
Confidence 111 2457899999999999999988 45555543 479999999987542211 1899
Q ss_pred HhcCeeEEcCC-cCcChHHHHHHccCCcccccC
Q 002628 856 LSSFSFLRKHI-FNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 856 aaADIfVlPS~-~EpFGLV~LEAMg~gl~Vidg 887 (899)
+.||+||+||. .|++|++++|||++|+||+..
T Consensus 296 ~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t 328 (397)
T TIGR03087 296 AHAAVAVAPLRIARGIQNKVLEAMAMAKPVVAS 328 (397)
T ss_pred HhCCEEEecccccCCcccHHHHHHHcCCCEEec
Confidence 99999999998 599999999999999999654
No 63
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.80 E-value=3.2e-19 Score=205.20 Aligned_cols=200 Identities=17% Similarity=0.133 Sum_probs=133.6
Q ss_pred CCceEEEECCCc-hhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCccccccccccc-chh
Q 002628 639 KQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHD-RIN 716 (899)
Q Consensus 639 ~kPDIIH~Hdw~-talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~-~in 716 (899)
.++||||+|+.. .++++.+ ... ..++|+|+|.|+...... ...+.........+ ..+ +.. ...
T Consensus 172 ~~~dviH~~s~~~~g~~~~~-~~~-----~~~~p~I~t~Hg~~~~e~--~~~~~~~~~~~~~~---~~~----~~~~~~~ 236 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGAL-AKA-----RRGTPFLLTEHGIYTRER--KIELLQADWEMSYF---RRL----WIRFFES 236 (475)
T ss_pred CCCCEEeccCcchHHHHHHH-HHH-----HhCCCEEEecCCccHHHH--HHHHHhcccchHHH---HHH----HHHHHHH
Confidence 478999999743 3343222 221 258999999998632100 00000000000000 000 101 112
Q ss_pred hhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHH
Q 002628 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH 796 (899)
Q Consensus 717 ~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~ 796 (899)
+.+.++..||.|+++|+...+. + ..++.++.|+.+||||+|.+.|.|....
T Consensus 237 l~~~~~~~ad~Ii~~s~~~~~~----~-~~~g~~~~ki~vIpNgid~~~f~~~~~~------------------------ 287 (475)
T cd03813 237 LGRLAYQAADRITTLYEGNRER----Q-IEDGADPEKIRVIPNGIDPERFAPARRA------------------------ 287 (475)
T ss_pred HHHHHHHhCCEEEecCHHHHHH----H-HHcCCCHHHeEEeCCCcCHHHcCCcccc------------------------
Confidence 3466778999999999976654 1 1123456799999999999888763110
Q ss_pred cCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCcc-Cc----cH------------------
Q 002628 797 LGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP-HI----QV------------------ 851 (899)
Q Consensus 797 LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~-~L----qk------------------ 851 (899)
+. ..+.++|+|+||+.+.||++.+++|+..+.+ .+++|+|+|+|+.. .+ ++
T Consensus 288 -~~---~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~ 363 (475)
T cd03813 288 -RP---EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQN 363 (475)
T ss_pred -cc---CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCcc
Confidence 11 1356899999999999999999999998875 48999999998531 11 10
Q ss_pred -HHHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 852 -YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 852 -e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
..+|+.||++|+||..|+||++++|||++|+||+.
T Consensus 364 v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVa 399 (475)
T cd03813 364 VKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVA 399 (475)
T ss_pred HHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEE
Confidence 18999999999999999999999999999999854
No 64
>PLN02949 transferase, transferring glycosyl groups
Probab=99.79 E-value=2.8e-17 Score=189.50 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=102.7
Q ss_pred hhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHc
Q 002628 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 797 (899)
Q Consensus 718 lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~L 797 (899)
.+.+...||.|+++|...++. +...+.. ..++.+|+||+|++.+.+..
T Consensus 214 ~~~~~~~ad~ii~nS~~t~~~----l~~~~~~-~~~i~vvyp~vd~~~~~~~~--------------------------- 261 (463)
T PLN02949 214 YGLVGRCAHLAMVNSSWTKSH----IEALWRI-PERIKRVYPPCDTSGLQALP--------------------------- 261 (463)
T ss_pred HHHHcCCCCEEEECCHHHHHH----HHHHcCC-CCCeEEEcCCCCHHHcccCC---------------------------
Confidence 355567899999999988776 2222222 35788999999976553210
Q ss_pred CCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc------cCcEEEEEcCCCcc-------CccH-------------
Q 002628 798 GLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE------LGGQFILLGSSPVP-------HIQV------------- 851 (899)
Q Consensus 798 GLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle------~dvqLVIVG~Gp~~-------~Lqk------------- 851 (899)
.. ..++.+.++++||+.++||++++|+|+..+.+ .+++|+|+|+|+.. ++++
T Consensus 262 -~~-~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f 339 (463)
T PLN02949 262 -LE-RSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEF 339 (463)
T ss_pred -cc-ccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEE
Confidence 00 01245789999999999999999999998653 37899999997421 1111
Q ss_pred -------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCccc-ccCCCc
Q 002628 852 -------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTV-NNNCEP 890 (899)
Q Consensus 852 -------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V-idgv~~ 890 (899)
+ .+|+.||++|+||.+|+||++++|||++|+|| ..+++|
T Consensus 340 ~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gG 388 (463)
T PLN02949 340 HKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAG 388 (463)
T ss_pred eCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCC
Confidence 0 89999999999999999999999999999766 434444
No 65
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.76 E-value=6.4e-18 Score=184.12 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=101.6
Q ss_pred hhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHH
Q 002628 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH 796 (899)
Q Consensus 717 ~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~ 796 (899)
+.+.++..+|.|+++|+..++. +... ...+..+|+||+|.+.|.|..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~----~~~~---~~~~~~vi~~~~d~~~~~~~~-------------------------- 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARR----IKKY---YGRDATVIYPPVDTDRFTPAE-------------------------- 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHH----HHHH---hCCCcEEECCCCCHhhcCcCC--------------------------
Confidence 3456678999999999988776 2111 134567999999998776521
Q ss_pred cCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhccCcEEEEEcCCCccC-ccH-----------------HHHHHhc
Q 002628 797 LGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-IQV-----------------YPILLSS 858 (899)
Q Consensus 797 LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~~-Lqk-----------------e~iyaaA 858 (899)
...+.++|+||+.+.||++.+++|+..+. ++|+|+|+|+... +++ ..+|++|
T Consensus 193 -------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~a 262 (351)
T cd03804 193 -------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARA 262 (351)
T ss_pred -------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhC
Confidence 13467899999999999999999999874 8999999997531 111 1899999
Q ss_pred CeeEEcCCcCcChHHHHHHccCCcccccCCC
Q 002628 859 FSFLRKHIFNICNLYIKLGQGGDLTVNNNCE 889 (899)
Q Consensus 859 DIfVlPS~~EpFGLV~LEAMg~gl~Vidgv~ 889 (899)
|++++||. |+||++.+|||++|.||+....
T Consensus 263 d~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~ 292 (351)
T cd03804 263 RAFLFPAE-EDFGIVPVEAMASGTPVIAYGK 292 (351)
T ss_pred CEEEECCc-CCCCchHHHHHHcCCCEEEeCC
Confidence 99999999 9999999999999999965433
No 66
>PHA01633 putative glycosyl transferase group 1
Probab=99.75 E-value=3.9e-17 Score=181.19 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=104.3
Q ss_pred hhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCC
Q 002628 722 IVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSS 801 (899)
Q Consensus 722 i~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~ 801 (899)
+...+.+|++|+..++. +.. .+... .+ +|+||||++.|.|..+ ....++++++...
T Consensus 90 m~~~~~vIavS~~t~~~----L~~-~G~~~-~i-~I~~GVD~~~f~p~~~-----------------~~~~~r~~~~~~~ 145 (335)
T PHA01633 90 LLQDVKFIPNSKFSAEN----LQE-VGLQV-DL-PVFHGINFKIVENAEK-----------------LVPQLKQKLDKDF 145 (335)
T ss_pred HhcCCEEEeCCHHHHHH----HHH-hCCCC-ce-eeeCCCChhhcCccch-----------------hhHHHHHHhCcCC
Confidence 44467899999988886 211 11122 23 5889999998877421 1234667777542
Q ss_pred CCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEEcCCCccC--------c-------cHH---HHHHh
Q 002628 802 ADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSSPVPH--------I-------QVY---PILLS 857 (899)
Q Consensus 802 ~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIVG~Gp~~~--------L-------qke---~iyaa 857 (899)
++.++|+++||+.++||++.+++|+.++.+. +++++++|.+.... + ..+ .+|++
T Consensus 146 --~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~ 223 (335)
T PHA01633 146 --PDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHKQFTQLEVPANVHFVAEFGHNSREYIFAFYGA 223 (335)
T ss_pred --CCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHHHHHHcCCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 3568899999999999999999999998753 36888888642110 1 111 89999
Q ss_pred cCeeEEcCCcCcChHHHHHHccCCccccc-CCCc
Q 002628 858 SFSFLRKHIFNICNLYIKLGQGGDLTVNN-NCEP 890 (899)
Q Consensus 858 ADIfVlPS~~EpFGLV~LEAMg~gl~Vid-gv~~ 890 (899)
||+||+||.+|+||++++|||++|+||+. +|+|
T Consensus 224 aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~ 257 (335)
T PHA01633 224 MDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPP 257 (335)
T ss_pred CCEEEECCccccCCHHHHHHHHcCCCEEEccCCC
Confidence 99999999999999999999999999954 4444
No 67
>PHA01630 putative group 1 glycosyl transferase
Probab=99.75 E-value=1.2e-17 Score=184.75 Aligned_cols=137 Identities=8% Similarity=0.006 Sum_probs=103.8
Q ss_pred hhhccEEEEeChhhHHhh-ccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCC
Q 002628 722 IVFSNIVTTVSPSYAQEG-GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLS 800 (899)
Q Consensus 722 i~~AD~VItVS~sya~e~-g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs 800 (899)
...+|.|+++|+...+.+ ..|+ ....++.+||||||.+.|.|... .
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~~g~-----~~~~~i~vIpNGVd~~~f~~~~~----------------------------~ 138 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYTSGL-----KIPQPIYVIPHNLNPRMFEYKPK----------------------------E 138 (331)
T ss_pred hccCCEEEECCHHHHHHHHHcCC-----CCCCCEEEECCCCCHHHcCCCcc----------------------------c
Confidence 456999999999888761 1111 11468999999999988876310 0
Q ss_pred CCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCccC----cc-------HH---HHHHhcCeeEEc
Q 002628 801 SADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH----IQ-------VY---PILLSSFSFLRK 864 (899)
Q Consensus 801 ~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~~----Lq-------ke---~iyaaADIfVlP 864 (899)
..+..+++++||+.++||++.|++|++.+.+ .+++++|+|+++... +. .+ .+|++||+||+|
T Consensus 139 --~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~p 216 (331)
T PHA01630 139 --KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYP 216 (331)
T ss_pred --cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhccccceeccCCHHHHHHHHHhCCEEEEC
Confidence 0134577788899999999999999999875 379999999875321 10 11 899999999999
Q ss_pred CCcCcChHHHHHHccCCccccc-CCCcccc
Q 002628 865 HIFNICNLYIKLGQGGDLTVNN-NCEPWLH 893 (899)
Q Consensus 865 S~~EpFGLV~LEAMg~gl~Vid-gv~~~l~ 893 (899)
|++|+||++++|||++|+||+. +++|+-+
T Consensus 217 S~~E~fgl~~lEAMA~G~PVIas~~gg~~E 246 (331)
T PHA01630 217 VRGGAFEIPVIEALALGLDVVVTEKGAWSE 246 (331)
T ss_pred CccccCChHHHHHHHcCCCEEEeCCCCchh
Confidence 9999999999999999998843 5565433
No 68
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.74 E-value=6.9e-17 Score=177.49 Aligned_cols=259 Identities=13% Similarity=-0.011 Sum_probs=160.6
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||++++.+ .||...+...|+++|.++||+|+|++....... .. + ..
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~~---~-----------------------~~ 48 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEA-RL---V-----------------------PK 48 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-hc---c-----------------------cc
Confidence 899988753 588888889999999999999999986432100 00 0 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCe
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giP 671 (899)
.|++++.++.. . +.+............+......+.++++ ..+|||||+|+|.+++.+ .+... ..++|
T Consensus 49 ~g~~~~~~~~~--~--~~~~~~~~~l~~~~~~~~~~~~~~~~ik--~~~pDvv~~~~~~~~~~~-~~~~~-----~~~~p 116 (357)
T PRK00726 49 AGIEFHFIPSG--G--LRRKGSLANLKAPFKLLKGVLQARKILK--RFKPDVVVGFGGYVSGPG-GLAAR-----LLGIP 116 (357)
T ss_pred CCCcEEEEecc--C--cCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCcchhHH-HHHHH-----HcCCC
Confidence 35666655421 0 0000000000001111111122233444 358999999998776543 22222 25789
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCC
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~ 751 (899)
+|++.|+... . . ..+.....+|.++++++.... . ...
T Consensus 117 ~v~~~~~~~~-----~-~---------------------------~~r~~~~~~d~ii~~~~~~~~-------~---~~~ 153 (357)
T PRK00726 117 LVIHEQNAVP-----G-L---------------------------ANKLLARFAKKVATAFPGAFP-------E---FFK 153 (357)
T ss_pred EEEEcCCCCc-----c-H---------------------------HHHHHHHHhchheECchhhhh-------c---cCC
Confidence 9988775310 0 0 013345578999888873321 1 346
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHH-HHHHH
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIR-HAIYR 830 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLI-eAi~~ 830 (899)
.++++||||+|.+.|.+.. .+++++++ ++.++|+++|+....|+...++ +|+.+
T Consensus 154 ~~i~vi~n~v~~~~~~~~~----------------------~~~~~~~~---~~~~~i~~~gg~~~~~~~~~~l~~a~~~ 208 (357)
T PRK00726 154 PKAVVTGNPVREEILALAA----------------------PPARLAGR---EGKPTLLVVGGSQGARVLNEAVPEALAL 208 (357)
T ss_pred CCEEEECCCCChHhhcccc----------------------hhhhccCC---CCCeEEEEECCcHhHHHHHHHHHHHHHH
Confidence 8899999999987654421 12345654 2567889999999988875555 89888
Q ss_pred hhccCcEEEEEcCCCccCcc---------------HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccC
Q 002628 831 TLELGGQFILLGSSPVPHIQ---------------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 831 Lle~dvqLVIVG~Gp~~~Lq---------------ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidg 887 (899)
+......++++|+|+...+. .. .+|++||+++++|- +.+++|||++|.||+..
T Consensus 209 ~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~ 278 (357)
T PRK00726 209 LPEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILV 278 (357)
T ss_pred hhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEe
Confidence 75433456778998643211 11 99999999999873 68999999999999653
No 69
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.74 E-value=1.7e-17 Score=193.03 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=125.5
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~ 717 (899)
..++||+|++....... + +... ...+|+++++|+..+........ .. + +...+..
T Consensus 209 ~~~~di~i~dr~~~~~~-~-~~~~-----~~~~~~v~~lH~~h~~~~~~~~~--------~~------~----~~~~y~~ 263 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQ-A-VLEN-----KGPAKLGVVVHAEHFSESATNET--------YI------L----WNNYYEY 263 (500)
T ss_pred CCCCCEEEEcCCcccch-H-HHhc-----CCCceEEEEEChhhhcCccCcch--------hH------H----HHHHHHH
Confidence 45899999986443221 2 2221 24789999999754321110000 00 0 0000101
Q ss_pred hhHHhhhccEEEEeChhhHHhhccccccccc---cCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHH
Q 002628 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN---FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIR 794 (899)
Q Consensus 718 lK~ai~~AD~VItVS~sya~e~g~GL~~iL~---~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLR 794 (899)
....+..+|.||++|+..++. +...+. ....++.+||||++...+.|..
T Consensus 264 ~~~~~~~~D~iI~~S~~~~~~----l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~------------------------ 315 (500)
T TIGR02918 264 QFSNADYIDFFITATDIQNQI----LKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ------------------------ 315 (500)
T ss_pred HHhchhhCCEEEECCHHHHHH----HHHHhhhhcCCCCcEEEEcCCCcccccCccc------------------------
Confidence 112245689999999977665 222121 2257899999998754333210
Q ss_pred HHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCccC-ccH-------------------H
Q 002628 795 KHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV-------------------Y 852 (899)
Q Consensus 795 k~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~~-Lqk-------------------e 852 (899)
......|+|+||+.++||++.+++|+..+.+ .+++|+|+|+|+... +.+ .
T Consensus 316 --------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~ 387 (500)
T TIGR02918 316 --------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLS 387 (500)
T ss_pred --------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHH
Confidence 0133579999999999999999999999875 489999999998532 211 1
Q ss_pred HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 853 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 853 ~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
.+|+.||+||+||.+|+||+|++||||+|+||+.
T Consensus 388 ~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~ 421 (500)
T TIGR02918 388 EVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIG 421 (500)
T ss_pred HHHHhCCEEEEcCccccccHHHHHHHHhCCCEEE
Confidence 9999999999999999999999999999999854
No 70
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.72 E-value=4.1e-16 Score=169.62 Aligned_cols=257 Identities=14% Similarity=0.038 Sum_probs=156.7
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
+|++.+. ..||...++..|+++|.++||+|+|+++...... . . . ...
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~------~--------~------------~~~ 47 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R------L--------V------------PKA 47 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h------c--------c------------ccc
Confidence 3555544 3688888889999999999999999987543110 0 0 0 013
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeE
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARV 672 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPi 672 (899)
|++++.++.. .+.+...+.....+..+......+..+++ ..+|||||+|.+..++. ..++.. ..++|+
T Consensus 48 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~pDvI~~~~~~~~~~-~~~~a~-----~~~~p~ 115 (350)
T cd03785 48 GIPLHTIPVG----GLRRKGSLKKLKAPFKLLKGVLQARKILK--KFKPDVVVGFGGYVSGP-VGLAAK-----LLGIPL 115 (350)
T ss_pred CCceEEEEec----CcCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCcchH-HHHHHH-----HhCCCE
Confidence 4555555421 01010110000000111111222334444 35899999998765443 222222 247899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCC
Q 002628 673 CFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSK 752 (899)
Q Consensus 673 V~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~ 752 (899)
|++.|+.. + .. ..+.....+|.|+++|+...+. ....
T Consensus 116 v~~~~~~~-----~-~~---------------------------~~~~~~~~~~~vi~~s~~~~~~----------~~~~ 152 (350)
T cd03785 116 VIHEQNAV-----P-GL---------------------------ANRLLARFADRVALSFPETAKY----------FPKD 152 (350)
T ss_pred EEEcCCCC-----c-cH---------------------------HHHHHHHhhCEEEEcchhhhhc----------CCCC
Confidence 87666421 0 00 0122345689999999876542 2457
Q ss_pred cEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHH-HHHHHHHHh
Q 002628 753 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIRHAIYRT 831 (899)
Q Consensus 753 KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvd-lLIeAi~~L 831 (899)
++.+|+||+|.+.+.+. .. ++.++++ ++.++|+++|+....|+.+ ++++|+..+
T Consensus 153 ~~~~i~n~v~~~~~~~~---------------------~~-~~~~~~~---~~~~~i~~~~g~~~~~~~~~~l~~a~~~l 207 (350)
T cd03785 153 KAVVTGNPVREEILALD---------------------RE-RARLGLR---PGKPTLLVFGGSQGARAINEAVPEALAEL 207 (350)
T ss_pred cEEEECCCCchHHhhhh---------------------hh-HHhcCCC---CCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 89999999998766441 11 5677776 3567888888877777775 456888877
Q ss_pred hccCcEE-EEEcCCCccCcc----------------HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 832 LELGGQF-ILLGSSPVPHIQ----------------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 832 le~dvqL-VIVG~Gp~~~Lq----------------ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
...++++ +++|+|....+. .+ .+|+.||++|++|- |++++|||++|+||+.
T Consensus 208 ~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~ 277 (350)
T cd03785 208 LRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAIL 277 (350)
T ss_pred hccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEE
Confidence 6556664 467888432211 01 89999999999873 6899999999999864
No 71
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=6.5e-16 Score=167.98 Aligned_cols=259 Identities=16% Similarity=0.070 Sum_probs=151.9
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||++++.+ +||--.....|+++|.++||+|+|+++.++... .+ + ..
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~-----~~--------------------~--~~ 47 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK-----RL--------------------V--PK 47 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh-----cc--------------------c--cc
Confidence 688877653 244444456899999999999999986432100 00 0 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCe
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giP 671 (899)
.|++++.++... +.+............+......+.++++ ..+|||||+|.+.+++.+. .... +.++|
T Consensus 48 ~g~~~~~i~~~~----~~~~~~~~~l~~~~~~~~~~~~l~~~i~--~~~pDvVi~~~~~~~~~~~-~~~~-----~~~~p 115 (348)
T TIGR01133 48 AGIEFYFIPVGG----LRRKGSFRLIKTPLKLLKAVFQARRILK--KFKPDAVIGFGGYVSGPAG-LAAK-----LLGIP 115 (348)
T ss_pred CCCceEEEeccC----cCCCChHHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEEcCCcccHHHH-HHHH-----HcCCC
Confidence 355665554210 1010110000000111111122334454 4689999999876554422 2222 24678
Q ss_pred EEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCC
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHS 751 (899)
Q Consensus 672 iV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~ 751 (899)
+|++.|+.. +. . ..+...+++|.++++|+...+. +
T Consensus 116 ~v~~~~~~~-----~~-~---------------------------~~~~~~~~~d~ii~~~~~~~~~----~-------- 150 (348)
T TIGR01133 116 LFHHEQNAV-----PG-L---------------------------TNKLLSRFAKKVLISFPGAKDH----F-------- 150 (348)
T ss_pred EEEECCCCC-----cc-H---------------------------HHHHHHHHhCeeEECchhHhhc----C--------
Confidence 875444321 00 0 0133456799999999977553 1
Q ss_pred CcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHH-HHHHHHHH
Q 002628 752 KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVH-LIRHAIYR 830 (899)
Q Consensus 752 ~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvd-lLIeAi~~ 830 (899)
+..+|+||+|...+.+.. .++.+|++ ++.++|+++||....|++. .+++|+..
T Consensus 151 -~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~---~~~~~i~~~gg~~~~~~~~~~l~~a~~~ 204 (348)
T TIGR01133 151 -EAVLVGNPVRQEIRSLPV----------------------PRERFGLR---EGKPTILVLGGSQGAKILNELVPKALAK 204 (348)
T ss_pred -CceEEcCCcCHHHhcccc----------------------hhhhcCCC---CCCeEEEEECCchhHHHHHHHHHHHHHH
Confidence 337999999976554310 12356776 3668899999988889865 45688888
Q ss_pred hhccCcEEEE-EcCCCccCccH------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCccccc-CCCc
Q 002628 831 TLELGGQFIL-LGSSPVPHIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN-NCEP 890 (899)
Q Consensus 831 Lle~dvqLVI-VG~Gp~~~Lqk------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid-gv~~ 890 (899)
+.+.++++++ +|+++...+++ ..+|++||++|.+| .|.+++|||++|+|++. .++|
T Consensus 205 l~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~~----g~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 205 LAEKGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFIDENMAAAYAAADLVISRA----GASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred HhhcCcEEEEECCcchHHHHHHHHhhCCceEEecCcccCHHHHHHhCCEEEECC----ChhHHHHHHHcCCCEEEeeCCC
Confidence 7655666644 45553321111 18999999999976 27899999999999854 4443
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.71 E-value=1.1e-16 Score=184.18 Aligned_cols=227 Identities=16% Similarity=0.123 Sum_probs=140.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccc
Q 002628 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (899)
Q Consensus 620 ~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~ 699 (899)
+..|.-+++...+.+...-...|+||+||+|..++ |.+++.. ..+.|+++.+|-.. |...+.. .+|.
T Consensus 111 w~~Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~ll-p~~lr~~----~~~~~i~~f~Hipf-----P~~e~~~-~lp~-- 177 (460)
T cd03788 111 WEAYVRVNRKFADAIAEVLRPGDLVWVHDYHLLLL-PQMLRER----GPDARIGFFLHIPF-----PSSEIFR-CLPW-- 177 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhHH-HHHHHhh----CCCCeEEEEEeCCC-----CChHHHh-hCCC--
Confidence 33443344444444443334679999999998887 4454431 34689999999542 2222111 1110
Q ss_pred cCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhh-c-----cccc----c--ccccCCCcEEEEecCccCCCCC
Q 002628 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-G-----QGLH----S--TLNFHSKKFVGILNGIDTDAWN 767 (899)
Q Consensus 700 l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g-----~GL~----~--iL~~~~~KI~VIpNGID~e~f~ 767 (899)
...+-.++..+|.|..-+..|++.+ . .|+. . ....+..++.+||||||++.|.
T Consensus 178 ---------------~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~ 242 (460)
T cd03788 178 ---------------REELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFR 242 (460)
T ss_pred ---------------hHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHH
Confidence 0111234445677776666665541 0 0010 0 0112346789999999998876
Q ss_pred CCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEE
Q 002628 768 PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILL 841 (899)
Q Consensus 768 P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIV 841 (899)
+... ....+..+++..+.. +++++|+++||+.+.||++.+++|+..+.+. +++|+++
T Consensus 243 ~~~~--------------~~~~~~~~~~~~~~~---~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~v 305 (460)
T cd03788 243 KLAA--------------SPEVQERAAELRERL---GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQI 305 (460)
T ss_pred HHhc--------------CchhHHHHHHHHHhc---CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEE
Confidence 5311 011122333444443 3678999999999999999999999988753 2678888
Q ss_pred cCCC-----cc-Cc------------------------------cHH---HHHHhcCeeEEcCCcCcChHHHHHHccCCc
Q 002628 842 GSSP-----VP-HI------------------------------QVY---PILLSSFSFLRKHIFNICNLYIKLGQGGDL 882 (899)
Q Consensus 842 G~Gp-----~~-~L------------------------------qke---~iyaaADIfVlPS~~EpFGLV~LEAMg~gl 882 (899)
|.+. .. .+ ..+ .+|++||+||+||..|+||+|++|||+||.
T Consensus 306 g~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~ 385 (460)
T cd03788 306 AVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQD 385 (460)
T ss_pred ccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEec
Confidence 6432 10 00 001 899999999999999999999999999999
Q ss_pred c-----cccCCCcc
Q 002628 883 T-----VNNNCEPW 891 (899)
Q Consensus 883 ~-----Vidgv~~~ 891 (899)
| |..+.+|.
T Consensus 386 p~~g~vV~S~~~G~ 399 (460)
T cd03788 386 DDPGVLILSEFAGA 399 (460)
T ss_pred CCCceEEEeccccc
Confidence 8 56655554
No 73
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.69 E-value=4.5e-16 Score=175.85 Aligned_cols=190 Identities=14% Similarity=0.043 Sum_probs=128.2
Q ss_pred CCCceEEEECCCch-hhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchh
Q 002628 638 GKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRIN 716 (899)
Q Consensus 638 ~~kPDIIH~Hdw~t-alVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in 716 (899)
..++||+|+|..+. ++....+... ...+++|.|+|++...... .+ .....
T Consensus 125 ~~~~~v~~sy~~~~~~~~~~~l~~~-----~~~~~~i~~~Hg~d~~~~~---------~~---------------~~~~~ 175 (407)
T cd04946 125 DGQGTVFYSYWLHETAYALALLKKE-----YLRKRVISRAHGYDLYEDR---------YP---------------SGYIP 175 (407)
T ss_pred ccCceEEEEecCchHHHHHHHHHHh-----cCCceEEEEeccchhhhhh---------cc---------------ccchH
Confidence 35678998874333 2221222222 2334699999986521100 00 00112
Q ss_pred hhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHH
Q 002628 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH 796 (899)
Q Consensus 717 ~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~ 796 (899)
+.+..+..+|.|+++|+..++. +...++....++.++|||++...+.+..
T Consensus 176 ~~~~~~~~~d~ii~~S~~~~~~----l~~~~~~~~~ki~vi~~gv~~~~~~~~~-------------------------- 225 (407)
T cd04946 176 LRRYLLSSLDAVFPCSEQGRNY----LQKRYPAYKEKIKVSYLGVSDPGIISKP-------------------------- 225 (407)
T ss_pred HHHHHHhcCCEEEECCHHHHHH----HHHHCCCccccEEEEECCcccccccCCC--------------------------
Confidence 3345578899999999988776 3333344567899999999976554310
Q ss_pred cCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc----CcEEEEEcCCCccC-cc-------------------H-
Q 002628 797 LGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL----GGQFILLGSSPVPH-IQ-------------------V- 851 (899)
Q Consensus 797 LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~----dvqLVIVG~Gp~~~-Lq-------------------k- 851 (899)
...+.+.|+++||+.+.||++.+++|+..+.+. ++.++++|+|+... ++ .
T Consensus 226 -----~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~ 300 (407)
T cd04946 226 -----SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNS 300 (407)
T ss_pred -----CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChH
Confidence 012457899999999999999999999998753 57788899987531 10 0
Q ss_pred H--HHHHh--cCeeEEcCCcCcChHHHHHHccCCcccc-cCCCcc
Q 002628 852 Y--PILLS--SFSFLRKHIFNICNLYIKLGQGGDLTVN-NNCEPW 891 (899)
Q Consensus 852 e--~iyaa--ADIfVlPS~~EpFGLV~LEAMg~gl~Vi-dgv~~~ 891 (899)
+ .+|+. +|+|++||.+|+||++++|||++|+||+ ++++|.
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 1 66654 7899999999999999999999999995 344443
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.67 E-value=5.9e-16 Score=178.32 Aligned_cols=228 Identities=17% Similarity=0.119 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCccccc
Q 002628 621 RRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQL 700 (899)
Q Consensus 621 ~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l 700 (899)
..|.-.++..++.+...-..-|+|.+||+|-.++ |.+++.. ....++.+.+|-. +|...+..+ +|.
T Consensus 108 ~~Y~~vN~~fA~~i~~~~~~~d~vwvhDYhl~l~-p~~lr~~----~~~~~igfFlHip-----fP~~e~f~~-lp~--- 173 (456)
T TIGR02400 108 EAYRRVNRLFAEALAPLLQPGDIVWVHDYHLMLL-PAMLREL----GVQNKIGFFLHIP-----FPSSEIYRT-LPW--- 173 (456)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEecchhhHH-HHHHHhh----CCCCeEEEEEeCC-----CCChHHHhh-CCc---
Confidence 3333333333333333323458999999999888 5555542 2467899999943 232222111 111
Q ss_pred CCcccccccccccchhhhhHHhhhccEEEEeChhhHHhh-c-----ccccc-----ccccCCCcEEEEecCccCCCCCCC
Q 002628 701 NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-G-----QGLHS-----TLNFHSKKFVGILNGIDTDAWNPA 769 (899)
Q Consensus 701 ~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g-----~GL~~-----iL~~~~~KI~VIpNGID~e~f~P~ 769 (899)
..-+-.++..||.|..-++.|++.+ . .|+.. ....+..++.+||||||++.|.|.
T Consensus 174 --------------r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~ 239 (456)
T TIGR02400 174 --------------RRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQ 239 (456)
T ss_pred --------------HHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHH
Confidence 1123456778999999999888761 0 01110 111245778999999999988663
Q ss_pred cchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEEc-
Q 002628 770 TDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLG- 842 (899)
Q Consensus 770 ~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIVG- 842 (899)
... + ........+|++++ ++++|++|||+++.||++.+++|++++++. ++.|+++|
T Consensus 240 ~~~-------~----~~~~~~~~lr~~~~------~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~ 302 (456)
T TIGR02400 240 AKK-------P----SVQKRIAELRESLK------GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAV 302 (456)
T ss_pred hcC-------h----hHHHHHHHHHHHcC------CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEec
Confidence 210 0 00011224666663 468999999999999999999999998642 35677764
Q ss_pred ----CCCcc-C-------c-----------------------cHH---HHHHhcCeeEEcCCcCcChHHHHHHccCCcc-
Q 002628 843 ----SSPVP-H-------I-----------------------QVY---PILLSSFSFLRKHIFNICNLYIKLGQGGDLT- 883 (899)
Q Consensus 843 ----~Gp~~-~-------L-----------------------qke---~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~- 883 (899)
+++.. . + ..+ .+|++||+||+||.+|+||+|++|||+||.|
T Consensus 303 p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~ 382 (456)
T TIGR02400 303 PSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPK 382 (456)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCC
Confidence 22211 0 0 011 8999999999999999999999999999998
Q ss_pred ----cccCCCcccc
Q 002628 884 ----VNNNCEPWLH 893 (899)
Q Consensus 884 ----Vidgv~~~l~ 893 (899)
|....+|--+
T Consensus 383 ~g~vVlS~~~G~~~ 396 (456)
T TIGR02400 383 DGVLILSEFAGAAQ 396 (456)
T ss_pred CceEEEeCCCCChH
Confidence 6666666433
No 75
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.65 E-value=1.2e-15 Score=167.36 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=126.2
Q ss_pred CCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhh
Q 002628 639 KQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPL 718 (899)
Q Consensus 639 ~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~l 718 (899)
.+||||++|....... +++ .. ....+.|+++|+..+...... . ... +.......
T Consensus 98 ~~~diii~~~~~~~~~-~~~-~~-----~~~~~~i~~~h~~~~~~~~~~--~---~~~--------------~~~~~~~~ 151 (372)
T cd04949 98 TKPDVFILDRPTLDGQ-ALL-NM-----KKAAKVVVVLHSNHVSDNNDP--V---HSL--------------INNFYEYV 151 (372)
T ss_pred CCCCEEEECCccccch-hHH-hc-----cCCceEEEEEChHHhCCcccc--c---ccc--------------cchhhHHH
Confidence 6899999997554432 122 21 134678999997542211000 0 000 00011112
Q ss_pred hHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcC
Q 002628 719 KGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLG 798 (899)
Q Consensus 719 K~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LG 798 (899)
...+..+|.|+++|+..++. +...+. ...++.+||||++...+.|..
T Consensus 152 ~~~~~~~d~ii~~s~~~~~~----l~~~~~-~~~~v~~ip~g~~~~~~~~~~---------------------------- 198 (372)
T cd04949 152 FENLDKVDGVIVATEQQKQD----LQKQFG-NYNPIYTIPVGSIDPLKLPAQ---------------------------- 198 (372)
T ss_pred HhChhhCCEEEEccHHHHHH----HHHHhC-CCCceEEEcccccChhhcccc----------------------------
Confidence 22356789999999987765 222222 234489999999987665420
Q ss_pred CCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCccC-ccH--------------------HHHH
Q 002628 799 LSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPH-IQV--------------------YPIL 855 (899)
Q Consensus 799 Ls~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~~-Lqk--------------------e~iy 855 (899)
.. ....+.|+++||+.++||++.+++|+..+.. .+++|+|+|.|+... +.. ..+|
T Consensus 199 ~~--~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 276 (372)
T cd04949 199 FK--QRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVY 276 (372)
T ss_pred hh--hcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHH
Confidence 00 1244689999999999999999999999875 479999999987531 110 1799
Q ss_pred HhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 856 LSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 856 aaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
+.||++|+||.+|+||++++|||++|+||+.
T Consensus 277 ~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~ 307 (372)
T cd04949 277 QKAQLSLLTSQSEGFGLSLMEALSHGLPVIS 307 (372)
T ss_pred hhhhEEEecccccccChHHHHHHhCCCCEEE
Confidence 9999999999999999999999999999963
No 76
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.61 E-value=1e-14 Score=169.41 Aligned_cols=282 Identities=21% Similarity=0.308 Sum_probs=137.6
Q ss_pred EcCccCCcccCCcHHHHHHHHHHHH-HHCCCeEEEEeeCCCCCcccccccccccceeeeeccCC-ccccceeeee--eeC
Q 002628 517 IAAEMAPVAKVGGLGDVVAGLGKAL-QKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDG-RLFKNKVWVS--TIE 592 (899)
Q Consensus 517 Is~E~~P~akvGGLg~vV~~LArAL-qk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG-~~~~~~V~~~--~ve 592 (899)
+++|..- ++||+-+|+..-|+.+ .+.|.+..+|-|........++..+...+..+....+. ....++|..| .++
T Consensus 2 ~sWEVcN--KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~Gl~v~~GRWlI~ 79 (633)
T PF05693_consen 2 VSWEVCN--KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEGLKVRYGRWLIP 79 (633)
T ss_dssp EETTTTS---SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT-EEEEEEESST
T ss_pred chhhhcc--ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCCCeEEEeceeEC
Confidence 4556554 6999999999988865 45788999999975543211121111100000000000 0011334333 357
Q ss_pred CeeEE-EeCCCCCCccccc-CCC-------CCC-----CcchhhHHHHHHHHHHHHHHh----C-CCceEEEECCCchhh
Q 002628 593 GLPVY-FIEPHHPDKFFWR-GQF-------YGE-----HDDFRRFSFFSRAALELLLQA----G-KQPDIIHCHDWQTAF 653 (899)
Q Consensus 593 GV~V~-~L~~~~p~~~F~r-~~i-------Yg~-----~Dd~~R~s~FsrAalelLrq~----~-~kPDIIH~Hdw~tal 653 (899)
|.|.+ +++-. .+++. ..+ |+- ..+..-...|+.++..++... . ...=|.|+|.|++++
T Consensus 80 G~P~vIL~D~~---s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~~~~~~ViaHfHEWmaG~ 156 (633)
T PF05693_consen 80 GRPIVILFDFG---SFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFYEEKPKVIAHFHEWMAGV 156 (633)
T ss_dssp T--EEEEEEGG---GGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH-S-SEEEEEEEESGGGTT
T ss_pred CcCeEEEEeCc---hHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCCCcEEEEechHhHhH
Confidence 87754 44421 12221 001 110 012222345555555544332 2 345688999999988
Q ss_pred HHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCccccc------ccccccchhhhhHHhhhccE
Q 002628 654 VAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQ------DNSAHDRINPLKGAIVFSNI 727 (899)
Q Consensus 654 Vapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~------d~~~~~~in~lK~ai~~AD~ 727 (899)
. .++++.. ...+.+|||.|.+-. |+ .+ ||-....+.....+. ....+.+..+++.+..+||.
T Consensus 157 g-ll~lr~~----~~~VaTvFTTHAT~l-GR----~l--~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~Adv 224 (633)
T PF05693_consen 157 G-LLYLRKR----KPDVATVFTTHATLL-GR----YL--AANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYADV 224 (633)
T ss_dssp H-HHHHHHT----T-SCEEEEEESS-HH-HH----HH--TTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHSSE
T ss_pred H-HHHHhcc----CCCeeEEEEecccch-hh----Hh--hcCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhcCe
Confidence 4 5565542 357899999997632 11 11 111111111111100 01234566788999999999
Q ss_pred EEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccc-hhhhHH----HHHHHc-CCCC
Q 002628 728 VTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQG-KAENKE----SIRKHL-GLSS 801 (899)
Q Consensus 728 VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~G-K~~~K~----aLRk~L-GLs~ 801 (899)
++|||...+.+ -..+|... .=.|+|||++.+.|... .. ++. +..+|+ .++.+| |--.
T Consensus 225 FTTVSeITa~E----a~~LL~r~--pDvV~pNGl~v~~~~~~-~e----------fqnl~~~~k~ki~~fv~~~f~g~~d 287 (633)
T PF05693_consen 225 FTTVSEITAKE----AEHLLKRK--PDVVTPNGLNVDKFPAL-HE----------FQNLHAKAKEKIHEFVRGHFYGHYD 287 (633)
T ss_dssp EEESSHHHHHH----HHHHHSS----SEE----B-GGGTSST-TH----------HHHHHHHHHHHHHHHHHHHSTT---
T ss_pred eeehhhhHHHH----HHHHhCCC--CCEEcCCCccccccccc-hH----------HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999998887 11233322 22588999998866432 11 111 122232 234444 2100
Q ss_pred CCC-CCcEEEEEecCC-CccCHHHHHHHHHHhh
Q 002628 802 ADA-RKPLVGCITRLV-PQKGVHLIRHAIYRTL 832 (899)
Q Consensus 802 ~d~-~kpLVgfVGRL~-~qKGvdlLIeAi~~Ll 832 (899)
-++ +..+|+..||.. ..||+|.+|+|+.+|-
T Consensus 288 fd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn 320 (633)
T PF05693_consen 288 FDLDKTLYFFTSGRYEFRNKGIDVFIEALARLN 320 (633)
T ss_dssp S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHH
T ss_pred CCccceEEEEeeeceeeecCCccHHHHHHHHHH
Confidence 122 345688899998 5999999999999874
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.60 E-value=4.2e-14 Score=140.69 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=68.5
Q ss_pred EEecCCCccCHHHHHHHHHHhhcc--CcEEEEEcCCCccCc-c--------------------HH---HHHHhcCeeEEc
Q 002628 811 CITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVPHI-Q--------------------VY---PILLSSFSFLRK 864 (899)
Q Consensus 811 fVGRL~~qKGvdlLIeAi~~Lle~--dvqLVIVG~Gp~~~L-q--------------------ke---~iyaaADIfVlP 864 (899)
|+||+.+.||++.+++|+..+... +++++++|.++.... . .+ .++++||++++|
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~ 188 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLP 188 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEec
Confidence 899999999999999999998764 899999999864321 0 01 666679999999
Q ss_pred CCcCcChHHHHHHccCCcccccCCCcccc
Q 002628 865 HIFNICNLYIKLGQGGDLTVNNNCEPWLH 893 (899)
Q Consensus 865 S~~EpFGLV~LEAMg~gl~Vidgv~~~l~ 893 (899)
|..|+||++++|||++|.||+..-.|+..
T Consensus 189 ~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 189 SLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 99999999999999999998655555543
No 78
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.55 E-value=2.8e-13 Score=153.19 Aligned_cols=142 Identities=13% Similarity=0.018 Sum_probs=101.1
Q ss_pred hhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHH
Q 002628 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH 796 (899)
Q Consensus 717 ~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~ 796 (899)
+.+..+..+|.|+++|+..++. +.. ++.+.. +++++|+ +.+.+.+.. .......+++.
T Consensus 171 ~~r~~~~~~d~ii~~S~~~~~~----l~~-~g~~~~-i~vi~n~-~~d~~~~~~---------------~~~~~~~~r~~ 228 (425)
T PRK05749 171 FYRLLFKNIDLVLAQSEEDAER----FLA-LGAKNE-VTVTGNL-KFDIEVPPE---------------LAARAATLRRQ 228 (425)
T ss_pred HHHHHHHhCCEEEECCHHHHHH----HHH-cCCCCC-cEecccc-cccCCCChh---------------hHHHHHHHHHH
Confidence 3456677899999999988876 211 123345 7888884 333332210 01123457777
Q ss_pred cCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCcc--Ccc----------------------
Q 002628 797 LGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HIQ---------------------- 850 (899)
Q Consensus 797 LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~--~Lq---------------------- 850 (899)
+| + ++++++++|+. .|+.+.+++|+..+.+ .+++|+|+|+|+.. .++
T Consensus 229 ~~-~----~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~ 301 (425)
T PRK05749 229 LA-P----NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSAD 301 (425)
T ss_pred hc-C----CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCC
Confidence 77 4 45788888874 6889999999998765 48999999998753 110
Q ss_pred ---------HH--HHHHhcCeeEE-cCCcCcChHHHHHHccCCcccccC
Q 002628 851 ---------VY--PILLSSFSFLR-KHIFNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 851 ---------ke--~iyaaADIfVl-PS~~EpFGLV~LEAMg~gl~Vidg 887 (899)
.+ .+|+.||++++ ||..|++|++++|||++|+||+.+
T Consensus 302 ~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g 350 (425)
T PRK05749 302 TDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISG 350 (425)
T ss_pred CcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEEC
Confidence 01 89999999655 678899999999999999999864
No 79
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.51 E-value=6.9e-13 Score=147.55 Aligned_cols=273 Identities=13% Similarity=0.087 Sum_probs=155.5
Q ss_pred CCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeee
Q 002628 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (899)
Q Consensus 510 ~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~ 589 (899)
+.|||++++..+ .||....+..|+++|.++||+|.++++.+..... .+..+.. ..|..--.+...+|..
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~-~~~~~~~-----~~y~~~~~~~~~~~~~ 71 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHP-VITEITK-----YLYLKSYTIGKELYRL 71 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcch-HHHHHHH-----HHHHHHHHHhHHHHHH
Confidence 457999999865 4699999999999999999998888877643211 0000000 0000000000000100
Q ss_pred eeCCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHH-HHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCC
Q 002628 590 TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFF-SRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLN 668 (899)
Q Consensus 590 ~veGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~F-srAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~ 668 (899)
...+ . ...++.. .+..+..+ .+.+.++++. .+||+||+|.+...+ +.+... ...
T Consensus 72 ~~~~-----~-----------~~~~~~~-~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~~--~~~~~~----~~~ 126 (380)
T PRK13609 72 FYYG-----V-----------EKIYDKK-IFSWYANFGRKRLKLLLQA--EKPDIVINTFPIIAV--PELKKQ----TGI 126 (380)
T ss_pred HHhc-----c-----------CcccchH-HHHHHHHHHHHHHHHHHHH--hCcCEEEEcChHHHH--HHHHHh----cCC
Confidence 0000 0 0011100 00001111 2444555553 589999998644322 222221 124
Q ss_pred CCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccc
Q 002628 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (899)
Q Consensus 669 giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~ 748 (899)
++|++.+++++.. .. ++....+|.++++|+...+. +.. .+
T Consensus 127 ~ip~~~~~td~~~--------------~~---------------------~~~~~~ad~i~~~s~~~~~~----l~~-~g 166 (380)
T PRK13609 127 SIPTYNVLTDFCL--------------HK---------------------IWVHREVDRYFVATDHVKKV----LVD-IG 166 (380)
T ss_pred CCCeEEEeCCCCC--------------Cc---------------------ccccCCCCEEEECCHHHHHH----HHH-cC
Confidence 6898866654311 00 01234589999999987765 111 12
Q ss_pred cCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCc-EEEEEecCCCccCHHHHHHH
Q 002628 749 FHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKP-LVGCITRLVPQKGVHLIRHA 827 (899)
Q Consensus 749 ~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kp-LVgfVGRL~~qKGvdlLIeA 827 (899)
.+..++.++.|.++. .|.+. ..+..+++++|+++ +++ ++++.|++...||+..++++
T Consensus 167 i~~~ki~v~G~p~~~-~f~~~------------------~~~~~~~~~~~l~~---~~~~il~~~G~~~~~k~~~~li~~ 224 (380)
T PRK13609 167 VPPEQVVETGIPIRS-SFELK------------------INPDIIYNKYQLCP---NKKILLIMAGAHGVLGNVKELCQS 224 (380)
T ss_pred CChhHEEEECcccCh-HHcCc------------------CCHHHHHHHcCCCC---CCcEEEEEcCCCCCCcCHHHHHHH
Confidence 345677776555542 22221 11334788899973 444 56677999999999999998
Q ss_pred HHHhhccCcEEEEE-cCCC-cc-CccH------------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 828 IYRTLELGGQFILL-GSSP-VP-HIQV------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 828 i~~Lle~dvqLVIV-G~Gp-~~-~Lqk------------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
+... .+++++++ |.++ .. .+++ ..+|++||++|. ++.|++++|||++|+||+-
T Consensus 225 l~~~--~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~ 298 (380)
T PRK13609 225 LMSV--PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAALGVPVIL 298 (380)
T ss_pred HhhC--CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEE
Confidence 8653 47898876 4332 11 1110 189999999884 5679999999999999964
No 80
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.50 E-value=4e-13 Score=129.62 Aligned_cols=174 Identities=27% Similarity=0.354 Sum_probs=90.2
Q ss_pred EcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeE
Q 002628 517 IAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPV 596 (899)
Q Consensus 517 Is~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V 596 (899)
|+..+.|. .||+++++.+|+++|+++||+|+|+++........ ....
T Consensus 3 i~~~~~~~--~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~-------------------------------~~~~ 49 (177)
T PF13439_consen 3 ITNIFLPN--IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEE-------------------------------ELVK 49 (177)
T ss_dssp EECC-TTS--SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SS-------------------------------TEEE
T ss_pred EEEecCCC--CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchh-------------------------------hccc
Confidence 33444553 79999999999999999999999999875532110 0000
Q ss_pred EEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEe
Q 002628 597 YFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTC 676 (899)
Q Consensus 597 ~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TI 676 (899)
...... +.... .......+...+...+++. +|||||+|.+.....+ .. .. . ++|+|+|+
T Consensus 50 ~~~~~~----~~~~~-------~~~~~~~~~~~~~~~i~~~--~~DiVh~~~~~~~~~~-~~-~~-----~-~~~~v~~~ 108 (177)
T PF13439_consen 50 IFVKIP----YPIRK-------RFLRSFFFMRRLRRLIKKE--KPDIVHIHGPPAFWIA-LL-AC-----R-KVPIVYTI 108 (177)
T ss_dssp E---TT-----SSTS-------S--HHHHHHHHHHHHHHHH--T-SEEECCTTHCCCHH-HH-HH-----H-CSCEEEEE
T ss_pred eeeeee----ccccc-------ccchhHHHHHHHHHHHHHc--CCCeEEecccchhHHH-HH-hc-----c-CCCEEEEe
Confidence 000000 00000 1112223344455666653 8999999987665432 11 11 1 68999999
Q ss_pred cCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEE
Q 002628 677 HNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVG 756 (899)
Q Consensus 677 Hn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~V 756 (899)
|+..+. .... ...... . ......+++.....+|.+++||...+++ +.. ++.++.|+.+
T Consensus 109 H~~~~~----~~~~---~~~~~~------~----~~~~~~~~~~~~~~~~~ii~vS~~~~~~----l~~-~~~~~~ki~v 166 (177)
T PF13439_consen 109 HGPYFE----RRFL---KSKLSP------Y----SYLNFRIERKLYKKADRIIAVSESTKDE----LIK-FGIPPEKIHV 166 (177)
T ss_dssp -HHH------HHTT---TTSCCC------H----HHHHHCTTHHHHCCSSEEEESSHHHHHH----HHH-HT--SS-EEE
T ss_pred CCCccc----cccc---ccccch------h----hhhhhhhhhhHHhcCCEEEEECHHHHHH----HHH-hCCcccCCEE
Confidence 986421 0000 000000 0 0001112344467899999999999987 444 4556799999
Q ss_pred EecCccCCCC
Q 002628 757 ILNGIDTDAW 766 (899)
Q Consensus 757 IpNGID~e~f 766 (899)
||||||++.|
T Consensus 167 I~ngid~~~F 176 (177)
T PF13439_consen 167 IYNGIDTDRF 176 (177)
T ss_dssp ----B-CCCH
T ss_pred EECCccHHHc
Confidence 9999999876
No 81
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.50 E-value=2e-13 Score=166.74 Aligned_cols=207 Identities=16% Similarity=0.209 Sum_probs=131.6
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK 719 (899)
.-|+|-+||+|-.++ |.+++.. ....++.|.+|-. +|...+..| +|. ..-+-
T Consensus 147 ~~d~vWvhDYhL~ll-p~~lR~~----~~~~~igfFlHiP-----FPs~e~fr~-lp~-----------------r~~il 198 (797)
T PLN03063 147 EGDVVWCHDYHLMFL-PQYLKEY----NNKMKVGWFLHTP-----FPSSEIYKT-LPS-----------------RSELL 198 (797)
T ss_pred CCCEEEEecchhhhH-HHHHHHh----CCCCcEEEEecCC-----CCCHHHHhh-CCC-----------------HHHHH
Confidence 448999999999888 5666542 3578999999965 232222111 110 01123
Q ss_pred HHhhhccEEEEeChhhHHhh-c-----ccccc----c-cccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhh
Q 002628 720 GAIVFSNIVTTVSPSYAQEG-G-----QGLHS----T-LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 788 (899)
Q Consensus 720 ~ai~~AD~VItVS~sya~e~-g-----~GL~~----i-L~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~ 788 (899)
.++..||.|.+-+..|++.+ . .|+.. + ......++.+||||||++.|.+... .++ ...
T Consensus 199 ~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~-------~~~----~~~ 267 (797)
T PLN03063 199 RAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCE-------LPE----VKQ 267 (797)
T ss_pred HHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhc-------Chh----HHH
Confidence 45667788888887777651 0 01110 0 1123467899999999987765311 000 001
Q ss_pred hHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc--C----cEEEEEc-----CCCcc-Ccc------
Q 002628 789 NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--G----GQFILLG-----SSPVP-HIQ------ 850 (899)
Q Consensus 789 ~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~--d----vqLVIVG-----~Gp~~-~Lq------ 850 (899)
....+++.++ ++++|++||||.+.||++.+++|+.++++. + +.|+.+| +|+.. .++
T Consensus 268 ~~~~lr~~~~------~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l 341 (797)
T PLN03063 268 HMKELKRFFA------GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHEL 341 (797)
T ss_pred HHHHHHHhcC------CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHH
Confidence 1224555543 468999999999999999999999998752 2 3344333 22211 010
Q ss_pred -------------------------HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCc-----ccccCCCcc
Q 002628 851 -------------------------VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDL-----TVNNNCEPW 891 (899)
Q Consensus 851 -------------------------ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl-----~Vidgv~~~ 891 (899)
.+ .+|++||+||+||.+|+||+|.+|||+||. .|....+|.
T Consensus 342 ~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~ 414 (797)
T PLN03063 342 VGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA 414 (797)
T ss_pred HHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc
Confidence 00 899999999999999999999999999995 456656654
No 82
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.49 E-value=1.8e-13 Score=165.99 Aligned_cols=219 Identities=17% Similarity=0.182 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccc
Q 002628 627 SRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM 706 (899)
Q Consensus 627 srAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL 706 (899)
++..++.+...-..-|+|.+||+|-.++ |.+++.. ....|+-+.+|-.. |...+..| +|.
T Consensus 120 N~~fA~~~~~~~~~~d~vwvhDYhl~l~-p~~lr~~----~~~~~igfFlH~pf-----P~~~~f~~-lp~--------- 179 (726)
T PRK14501 120 NQRFAEAIAAIARPGDVVWVHDYQLMLL-PAMLRER----LPDARIGFFLHIPF-----PSFEVFRL-LPW--------- 179 (726)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCchhhhH-HHHHHhh----CCCCcEEEEeeCCC-----CChHHHhh-CCC---------
Confidence 3333333333333459999999999888 5565532 35678999999652 32222111 110
Q ss_pred cccccccchhhhhHHhhhccEEEEeChhhHHhh-c-----cccc---c--ccccCCCcEEEEecCccCCCCCCCcchhhh
Q 002628 707 QDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-G-----QGLH---S--TLNFHSKKFVGILNGIDTDAWNPATDTFLK 775 (899)
Q Consensus 707 ~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g-----~GL~---~--iL~~~~~KI~VIpNGID~e~f~P~~d~~L~ 775 (899)
..-+-.++..+|.|..=+..|++.+ . .|+. . .+..+..++.++|||||++.|.|...
T Consensus 180 --------~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~---- 247 (726)
T PRK14501 180 --------REEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQ---- 247 (726)
T ss_pred --------hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhc----
Confidence 0112234556676666666665540 0 0100 0 01122356899999999998866311
Q ss_pred hhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEEcCC-----
Q 002628 776 VQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSS----- 844 (899)
Q Consensus 776 ~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIVG~G----- 844 (899)
++. .......+|+.++ ++++|++|||+++.||+..+++|+.++++. +++|+++|.|
T Consensus 248 ---~~~----~~~~~~~lr~~~~------~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~ 314 (726)
T PRK14501 248 ---DPE----VQEEIRRLRQDLR------GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGV 314 (726)
T ss_pred ---Cch----HHHHHHHHHHHcC------CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcch
Confidence 000 0011223555432 568999999999999999999999998752 3688888732
Q ss_pred Ccc-Ccc------------------------------HH---HHHHhcCeeEEcCCcCcChHHHHHHccC-----Ccccc
Q 002628 845 PVP-HIQ------------------------------VY---PILLSSFSFLRKHIFNICNLYIKLGQGG-----DLTVN 885 (899)
Q Consensus 845 p~~-~Lq------------------------------ke---~iyaaADIfVlPS~~EpFGLV~LEAMg~-----gl~Vi 885 (899)
+.. .++ .+ .+|++||+|++||.+|+||+|++|||+| |++|+
T Consensus 315 ~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vl 394 (726)
T PRK14501 315 PQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLIL 394 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEE
Confidence 110 000 01 8999999999999999999999999999 66787
Q ss_pred cCCCc
Q 002628 886 NNCEP 890 (899)
Q Consensus 886 dgv~~ 890 (899)
...+|
T Consensus 395 s~~~G 399 (726)
T PRK14501 395 SEMAG 399 (726)
T ss_pred ecccc
Confidence 66655
No 83
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.47 E-value=6e-13 Score=149.10 Aligned_cols=192 Identities=12% Similarity=-0.022 Sum_probs=126.8
Q ss_pred HHHHHHHHHhCCCceEEEECC-CchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccc
Q 002628 628 RAALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRM 706 (899)
Q Consensus 628 rAalelLrq~~~kPDIIH~Hd-w~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL 706 (899)
+...++++ ..+|||||+|. |...+. ..++..+......++|++.+++++. ..+ .
T Consensus 90 ~~l~~~i~--~~~pDvIi~thp~~~~~~-~~~l~~~~~~~~~~~p~~~~~tD~~-~~~------------~--------- 144 (382)
T PLN02605 90 REVAKGLM--KYKPDIIVSVHPLMQHVP-LRVLRWQGKELGKKIPFTTVVTDLG-TCH------------P--------- 144 (382)
T ss_pred HHHHHHHH--hcCcCEEEEeCcCcccCH-HHHHHHHhhccCCCCCEEEEECCCC-CcC------------c---------
Confidence 33445555 35899999963 433321 1122222111134789988887652 000 0
Q ss_pred cccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccch
Q 002628 707 QDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGK 786 (899)
Q Consensus 707 ~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK 786 (899)
.+....+|.++++|+..++. +.. .+.+++|++++++++|.+.+.+.
T Consensus 145 ------------~w~~~~~d~~~~~s~~~~~~----l~~-~g~~~~ki~v~g~~v~~~f~~~~----------------- 190 (382)
T PLN02605 145 ------------TWFHKGVTRCFCPSEEVAKR----ALK-RGLEPSQIRVYGLPIRPSFARAV----------------- 190 (382)
T ss_pred ------------ccccCCCCEEEECCHHHHHH----HHH-cCCCHHHEEEECcccCHhhccCC-----------------
Confidence 01134689999999987765 111 12356889999999987544331
Q ss_pred hhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh------ccCcE-EEEEcCCCc-c-CccH------
Q 002628 787 AENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL------ELGGQ-FILLGSSPV-P-HIQV------ 851 (899)
Q Consensus 787 ~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll------e~dvq-LVIVG~Gp~-~-~Lqk------ 851 (899)
.++.++|+++|+++ ++++|+++||....||+..+++++..+. ..+.+ ++++|.++. . .+..
T Consensus 191 -~~~~~~r~~~gl~~---~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~ 266 (382)
T PLN02605 191 -RPKDELRRELGMDE---DLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIP 266 (382)
T ss_pred -CCHHHHHHHcCCCC---CCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCC
Confidence 13566899999973 6799999999999999999999998654 23565 677887742 1 1110
Q ss_pred ----------HHHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 852 ----------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 852 ----------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
..+|++||++|.+| .|+|++|||++|+||+-
T Consensus 267 v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~ 307 (382)
T PLN02605 267 VKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGLPIIL 307 (382)
T ss_pred eEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEE
Confidence 19999999999876 48999999999999854
No 84
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.44 E-value=6.5e-13 Score=126.06 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=82.5
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCCCcc
Q 002628 528 GGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKF 607 (899)
Q Consensus 528 GGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p~~~ 607 (899)
||++.++.+|+++|.++||+|+|++|..+....+ ....|++++.++...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~---- 49 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE---------------------------EEEDGVRVHRLPLPR---- 49 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S---------------------------EEETTEEEEEE--S-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc---------------------------cccCCceEEeccCCc----
Confidence 8999999999999999999999999876542110 013466666554210
Q ss_pred cccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCCh
Q 002628 608 FWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPA 687 (899)
Q Consensus 608 F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~ 687 (899)
...... ... +......++.....+|||||+|++..++++ .+... ..++|+|+|+|+..+....+.
T Consensus 50 --~~~~~~---~~~----~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~-~~~~~-----~~~~p~v~~~h~~~~~~~~~~ 114 (160)
T PF13579_consen 50 --RPWPLR---LLR----FLRRLRRLLAARRERPDVVHAHSPTAGLVA-ALARR-----RRGIPLVVTVHGTLFRRGSRW 114 (160)
T ss_dssp --SSSGGG---HCC----HHHHHHHHCHHCT---SEEEEEHHHHHHHH-HHHHH-----HHT--EEEE-SS-T------H
T ss_pred --cchhhh---hHH----HHHHHHHHHhhhccCCeEEEecccchhHHH-HHHHH-----ccCCcEEEEECCCchhhccch
Confidence 000000 111 122233444323578999999997655553 22221 147999999998643211000
Q ss_pred hhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecC
Q 002628 688 KELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNG 760 (899)
Q Consensus 688 ~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNG 760 (899)
. .. +. ..+++..+..||.|+++|+..++. +.. ++.+++|+.+||||
T Consensus 115 ~--------~~------------~~--~~~~~~~~~~ad~vi~~S~~~~~~----l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 115 K--------RR------------LY--RWLERRLLRRADRVIVVSEAMRRY----LRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp H--------HH------------HH--HHHHHHHHHH-SEEEESSHHHHHH----HHH-H---GGGEEE----
T ss_pred h--------hH------------HH--HHHHHHHHhcCCEEEECCHHHHHH----HHH-hCCCCCcEEEeCcC
Confidence 0 00 00 123577888999999999998887 333 34567899999998
No 85
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.41 E-value=3e-11 Score=134.95 Aligned_cols=186 Identities=17% Similarity=0.124 Sum_probs=123.8
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~ 717 (899)
+..+.|++++...+..+ ... +.+.++|+.+|+... . .+ +.+. .....
T Consensus 100 ~~~~~i~~~~~P~~~~~----~~~-----~~~~~~Vyd~~D~~~-~-~~-------~~~~---------------~~~~~ 146 (373)
T cd04950 100 GFGRPILWYYTPYTLPV----AAL-----LQASLVVYDCVDDLS-A-FP-------GGPP---------------ELLEA 146 (373)
T ss_pred CCCCcEEEEeCccHHHH----Hhh-----cCCCeEEEEcccchh-c-cC-------CCCH---------------HHHHH
Confidence 56778888875443322 221 357899999997521 1 00 1110 01134
Q ss_pred hhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHc
Q 002628 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 797 (899)
Q Consensus 718 lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~L 797 (899)
++..++.||.|+++|+...+. +.. ...++++||||+|.+.|.+..... .. .+...
T Consensus 147 e~~~~~~ad~vi~~S~~l~~~----~~~----~~~~i~~i~ngvd~~~f~~~~~~~---------------~~--~~~~~ 201 (373)
T cd04950 147 ERRLLKRADLVFTTSPSLYEA----KRR----LNPNVVLVPNGVDYEHFAAARDPP---------------PP--PADLA 201 (373)
T ss_pred HHHHHHhCCEEEECCHHHHHH----Hhh----CCCCEEEcccccCHHHhhcccccC---------------CC--hhHHh
Confidence 577888999999999988765 211 226899999999999887642100 00 01111
Q ss_pred CCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhccCcEEEEEcCCCcc-Ccc----------------HH--HHHHhc
Q 002628 798 GLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP-HIQ----------------VY--PILLSS 858 (899)
Q Consensus 798 GLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~-~Lq----------------ke--~iyaaA 858 (899)
..++++|+|+|++.+.++++++.+++... .+++|+|+|.|+.. ... .+ .+|+++
T Consensus 202 -----~~~~~~i~y~G~l~~~~d~~ll~~la~~~--p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~ 274 (373)
T cd04950 202 -----ALPRPVIGYYGAIAEWLDLELLEALAKAR--PDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGF 274 (373)
T ss_pred -----cCCCCEEEEEeccccccCHHHHHHHHHHC--CCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhC
Confidence 12568999999999989988776655432 47999999998321 110 01 899999
Q ss_pred CeeEEcCCc-----CcChHHHHHHccCCcccccCC
Q 002628 859 FSFLRKHIF-----NICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 859 DIfVlPS~~-----EpFGLV~LEAMg~gl~Vidgv 888 (899)
|++++|+.. +.+|+.++|+||+|.||+...
T Consensus 275 Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~ 309 (373)
T cd04950 275 DVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP 309 (373)
T ss_pred CEEecCCccchhhhcCCcchHHHHhccCCCEEecC
Confidence 999999863 467999999999999997543
No 86
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.29 E-value=4.1e-11 Score=135.13 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=90.2
Q ss_pred hhccEEEEeChhhHHhh-ccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCC
Q 002628 723 VFSNIVTTVSPSYAQEG-GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSS 801 (899)
Q Consensus 723 ~~AD~VItVS~sya~e~-g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~ 801 (899)
.++|.++++|+...+.+ ..| .+..++.++.|+++.. |.+. ..+.++++++|+++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~g------i~~~ki~v~GiPv~~~-f~~~------------------~~~~~~~~~~~l~~ 200 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDVG------IDPSTVKVTGIPIDNK-FETP------------------IDQKQWLIDNNLDP 200 (391)
T ss_pred CCCCEEEECCHHHHHHHHHcC------CCHHHEEEECeecChH-hccc------------------ccHHHHHHHcCCCC
Confidence 45899999999877761 122 3457888877777643 2221 12345678899973
Q ss_pred CCCCCc-EEEEEecCCCccCHHHHHHHHHHhhccCcEEEEE-cCCCc--cCccH---------------H--HHHHhcCe
Q 002628 802 ADARKP-LVGCITRLVPQKGVHLIRHAIYRTLELGGQFILL-GSSPV--PHIQV---------------Y--PILLSSFS 860 (899)
Q Consensus 802 ~d~~kp-LVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVIV-G~Gp~--~~Lqk---------------e--~iyaaADI 860 (899)
+++ ++++.|++...||++.+++++.... .+++++++ |.++. ..+.. + .+|++||+
T Consensus 201 ---~~~~ilv~~G~lg~~k~~~~li~~~~~~~-~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl 276 (391)
T PRK13608 201 ---DKQTILMSAGAFGVSKGFDTMITDILAKS-ANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQL 276 (391)
T ss_pred ---CCCEEEEECCCcccchhHHHHHHHHHhcC-CCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhE
Confidence 344 5667999999999999999864321 36888665 54431 11111 1 89999999
Q ss_pred eEEcCCcCcChHHHHHHccCCccccc
Q 002628 861 FLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 861 fVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
+|. .+.|+|+.|||++|+|++-
T Consensus 277 ~I~----k~gg~tl~EA~a~G~PvI~ 298 (391)
T PRK13608 277 MIT----KPGGITISEGLARCIPMIF 298 (391)
T ss_pred EEe----CCchHHHHHHHHhCCCEEE
Confidence 997 4679999999999998854
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.29 E-value=3.9e-11 Score=139.35 Aligned_cols=208 Identities=17% Similarity=0.133 Sum_probs=135.2
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK 719 (899)
.-|+|-+||+|..++ |.+++.. ....++-|.+|-. +|...+..| +|.. .-+-
T Consensus 132 ~~d~vWVhDYhL~ll-p~~LR~~----~~~~~IgfFlHiP-----FPs~eifr~-LP~r-----------------~~ll 183 (487)
T TIGR02398 132 EGATVWVHDYNLWLV-PGYIRQL----RPDLKIAFFHHTP-----FPSADVFNI-LPWR-----------------EQII 183 (487)
T ss_pred CCCEEEEecchhhHH-HHHHHHh----CCCCeEEEEeeCC-----CCChHHHhh-CCch-----------------HHHH
Confidence 459999999999888 5565532 3467899999964 232222111 1110 0112
Q ss_pred HHhhhccEEEEeChhhHHhh-c-----cccccc--------------------------cccCCCcEEEEecCccCCCCC
Q 002628 720 GAIVFSNIVTTVSPSYAQEG-G-----QGLHST--------------------------LNFHSKKFVGILNGIDTDAWN 767 (899)
Q Consensus 720 ~ai~~AD~VItVS~sya~e~-g-----~GL~~i--------------------------L~~~~~KI~VIpNGID~e~f~ 767 (899)
.++..||.|-.=+..|++.+ . .|+... ...+.-++.++|.|||++.|.
T Consensus 184 ~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~ 263 (487)
T TIGR02398 184 GSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIR 263 (487)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHH
Confidence 34556777777776666641 0 011100 001234578999999998875
Q ss_pred CCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEE
Q 002628 768 PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILL 841 (899)
Q Consensus 768 P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIV 841 (899)
+... ++ .-......+|+++| ++++|+.|+|+.+.||++..++|+.++++. ++.|+++
T Consensus 264 ~~~~-------~~----~~~~~~~~lr~~~~------~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi 326 (487)
T TIGR02398 264 SALA-------AA----SIREMMERIRSELA------GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTA 326 (487)
T ss_pred HHhc-------Cc----hHHHHHHHHHHHcC------CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEE
Confidence 5311 00 00122455788877 458999999999999999999999998752 4789988
Q ss_pred cCCCcc---C---ccHH---------------------------------HHHHhcCeeEEcCCcCcChHHHHHHccCC-
Q 002628 842 GSSPVP---H---IQVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGGD- 881 (899)
Q Consensus 842 G~Gp~~---~---Lqke---------------------------------~iyaaADIfVlPS~~EpFGLV~LEAMg~g- 881 (899)
|.+... . +..+ .+|+.||+|++||..||++||..|+|+|.
T Consensus 327 ~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~ 406 (487)
T TIGR02398 327 CVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQG 406 (487)
T ss_pred eCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhc
Confidence 876421 1 1110 89999999999999999999999999874
Q ss_pred ----cccccCCCccc
Q 002628 882 ----LTVNNNCEPWL 892 (899)
Q Consensus 882 ----l~Vidgv~~~l 892 (899)
+-|....+|--
T Consensus 407 ~~~GvLILSefaGaa 421 (487)
T TIGR02398 407 LLDGVLVLSEFAGAA 421 (487)
T ss_pred CCCCCEEEeccccch
Confidence 45566666543
No 88
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.23 E-value=1.8e-11 Score=120.35 Aligned_cols=98 Identities=18% Similarity=0.206 Sum_probs=76.2
Q ss_pred HHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhh---ccCcEEEEEcCCCccC-c----------------
Q 002628 790 KESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTL---ELGGQFILLGSSPVPH-I---------------- 849 (899)
Q Consensus 790 K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Ll---e~dvqLVIVG~Gp~~~-L---------------- 849 (899)
|..++..++.+ .++++|+|+||+.+.||++.+++|+..+. ..++.++|+|.++... +
T Consensus 2 ~~~~~~~~~~~---~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~ 78 (172)
T PF00534_consen 2 KDKLREKLKIP---DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFL 78 (172)
T ss_dssp HHHHHHHTTT----TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEE
T ss_pred hHHHHHHcCCC---CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccc
Confidence 45567777776 37789999999999999999999999986 3589999999665321 0
Q ss_pred ---c-HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCCCc
Q 002628 850 ---Q-VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEP 890 (899)
Q Consensus 850 ---q-ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv~~ 890 (899)
. .+ .+|+.||++|+||.+|+||++++|||++|+||+....|
T Consensus 79 ~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~ 125 (172)
T PF00534_consen 79 GYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIG 125 (172)
T ss_dssp ESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESST
T ss_pred ccccccccccccccceeccccccccccccccccccccccceeecccc
Confidence 0 01 99999999999999999999999999999888443333
No 89
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.21 E-value=2.3e-10 Score=126.92 Aligned_cols=184 Identities=11% Similarity=-0.073 Sum_probs=109.2
Q ss_pred HHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccc
Q 002628 631 LELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNS 710 (899)
Q Consensus 631 lelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~ 710 (899)
.++++ .++|||||+|++.+... .+.... . ..++|+++..|+..+. +
T Consensus 78 ~~~l~--~~kPdivi~~~~~~~~~-~~a~~a--~--~~~ip~i~~~~~~~~~---------~------------------ 123 (380)
T PRK00025 78 KRRLL--AEPPDVFIGIDAPDFNL-RLEKKL--R--KAGIPTIHYVSPSVWA---------W------------------ 123 (380)
T ss_pred HHHHH--HcCCCEEEEeCCCCCCH-HHHHHH--H--HCCCCEEEEeCCchhh---------c------------------
Confidence 34444 46899999998533221 111111 1 2479999876643110 0
Q ss_pred cccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhH
Q 002628 711 AHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENK 790 (899)
Q Consensus 711 ~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K 790 (899)
..... +.....+|.++++|+...+.+. ....++.++.|++.... .+ ...+
T Consensus 124 ~~~~~---~~~~~~~d~i~~~~~~~~~~~~--------~~g~~~~~~G~p~~~~~-~~------------------~~~~ 173 (380)
T PRK00025 124 RQGRA---FKIAKATDHVLALFPFEAAFYD--------KLGVPVTFVGHPLADAI-PL------------------LPDR 173 (380)
T ss_pred CchHH---HHHHHHHhhheeCCccCHHHHH--------hcCCCeEEECcCHHHhc-cc------------------ccCh
Confidence 00111 1235678999999987665411 01123444444443211 10 0124
Q ss_pred HHHHHHcCCCCCCCCCcEE-EEEe-cCCCc-cCHHHHHHHHHHhhcc--CcEEEEEcC-CCcc-C-------c-c-----
Q 002628 791 ESIRKHLGLSSADARKPLV-GCIT-RLVPQ-KGVHLIRHAIYRTLEL--GGQFILLGS-SPVP-H-------I-Q----- 850 (899)
Q Consensus 791 ~aLRk~LGLs~~d~~kpLV-gfVG-RL~~q-KGvdlLIeAi~~Lle~--dvqLVIVG~-Gp~~-~-------L-q----- 850 (899)
..+++++|+++ +.+++ ++.| |.... ++++.+++|+..+.+. +++++++|. ++.. . . .
T Consensus 174 ~~~~~~l~~~~---~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (380)
T PRK00025 174 AAARARLGLDP---DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTL 250 (380)
T ss_pred HHHHHHcCCCC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEE
Confidence 45788899873 45654 4445 55554 4578999999988653 689999876 4321 1 1 0
Q ss_pred ----HHHHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 851 ----VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 851 ----ke~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
...+|+.||++|+|| |.+.+|||++|+||+-
T Consensus 251 ~~~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~ 285 (380)
T PRK00025 251 LDGQKREAMAAADAALAAS-----GTVTLELALLKVPMVV 285 (380)
T ss_pred EcccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEE
Confidence 018999999999998 8899999999999864
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.17 E-value=2.4e-10 Score=125.47 Aligned_cols=194 Identities=14% Similarity=0.060 Sum_probs=118.2
Q ss_pred HHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccc
Q 002628 629 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 708 (899)
Q Consensus 629 AalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d 708 (899)
.+.++++. .+|||||+|+.....++..++.. ..++|++++.|+.... . .+.+.
T Consensus 79 ~l~~~l~~--~~pDvV~~~g~~~~~~~~~~aa~-----~~~iPvv~~~~g~~s~---~------~~~~~----------- 131 (363)
T cd03786 79 GLEAVLLE--EKPDLVLVLGDTNETLAAALAAF-----KLGIPVAHVEAGLRSF---D------RGMPD----------- 131 (363)
T ss_pred HHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH-----HcCCCEEEEecccccC---C------CCCCc-----------
Confidence 33444543 48999999975433222233332 2589999877753210 0 00000
Q ss_pred cccccchhhhhHHhhhccEEEEeChhhHHh-hccccccccccCCCcEEEEecCc-cCCCCCCCcchhhhhhcccccccch
Q 002628 709 NSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYNANDLQGK 786 (899)
Q Consensus 709 ~~~~~~in~lK~ai~~AD~VItVS~sya~e-~g~GL~~iL~~~~~KI~VIpNGI-D~e~f~P~~d~~L~~~ysaddl~GK 786 (899)
. . ........+|.++++|+...+. ... +.++.++++|+||+ |...|.+..
T Consensus 132 ----~-~-~r~~~~~~ad~~~~~s~~~~~~l~~~------G~~~~kI~vign~v~d~~~~~~~~---------------- 183 (363)
T cd03786 132 ----E-E-NRHAIDKLSDLHFAPTEEARRNLLQE------GEPPERIFVVGNTMIDALLRLLEL---------------- 183 (363)
T ss_pred ----h-H-HHHHHHHHhhhccCCCHHHHHHHHHc------CCCcccEEEECchHHHHHHHHHHh----------------
Confidence 0 0 0012345689999999987776 122 23578899999996 543221110
Q ss_pred hhhHHHHHHHcCCCCCCCCCcEEEEEecCCC---ccCHHHHHHHHHHhhccCcEEEEEcCCCcc-Ccc----------H-
Q 002628 787 AENKESIRKHLGLSSADARKPLVGCITRLVP---QKGVHLIRHAIYRTLELGGQFILLGSSPVP-HIQ----------V- 851 (899)
Q Consensus 787 ~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~---qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~-~Lq----------k- 851 (899)
......++.+|++. ...++++.||+.. .||++.+++|+..+.+.++++++.|.++.. .++ .
T Consensus 184 -~~~~~~~~~~~~~~---~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~ 259 (363)
T cd03786 184 -AKKELILELLGLLP---KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPN 259 (363)
T ss_pred -hccchhhhhcccCC---CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCC
Confidence 00112345677762 4457788999875 899999999999886445777777766521 110 0
Q ss_pred ----------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 852 ----------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 852 ----------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
+ .+|++||++|.||- | ++.|||++|+||+.
T Consensus 260 v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~ 301 (363)
T cd03786 260 VLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLN 301 (363)
T ss_pred EEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEe
Confidence 1 77999999999994 5 47999999888743
No 91
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.04 E-value=1.7e-09 Score=119.98 Aligned_cols=193 Identities=14% Similarity=0.032 Sum_probs=115.8
Q ss_pred HHHHHHHhCCCceEEEECC-CchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccc
Q 002628 630 ALELLLQAGKQPDIIHCHD-WQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 708 (899)
Q Consensus 630 alelLrq~~~kPDIIH~Hd-w~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d 708 (899)
+.++++ ..+||+||+|+ +..++.+.+ ... ..++|++++-++....+... .
T Consensus 78 l~~~l~--~~~pDiv~~~gd~~~~la~a~-aa~-----~~~ipv~h~~~g~~s~~~~~-------~-------------- 128 (365)
T TIGR00236 78 LEELLL--EEKPDIVLVQGDTTTTLAGAL-AAF-----YLQIPVGHVEAGLRTGDRYS-------P-------------- 128 (365)
T ss_pred HHHHHH--HcCCCEEEEeCCchHHHHHHH-HHH-----HhCCCEEEEeCCCCcCCCCC-------C--------------
Confidence 334454 35899999995 555554333 222 25899986644331100000 0
Q ss_pred cccccchhhhhHHh-hhccEEEEeChhhHHhhccccccccccCCCcEEEEecCc-cCCCCCCCcchhhhhhcccccccch
Q 002628 709 NSAHDRINPLKGAI-VFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGI-DTDAWNPATDTFLKVQYNANDLQGK 786 (899)
Q Consensus 709 ~~~~~~in~lK~ai-~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGI-D~e~f~P~~d~~L~~~ysaddl~GK 786 (899)
+...+ .+..+ ..||.++++|+..++. +.. .+.++.++++++||+ |...+.+.
T Consensus 129 --~~~~~--~r~~~~~~ad~~~~~s~~~~~~----l~~-~G~~~~~I~vign~~~d~~~~~~~----------------- 182 (365)
T TIGR00236 129 --MPEEI--NRQLTGHIADLHFAPTEQAKDN----LLR-ENVKADSIFVTGNTVIDALLTNVE----------------- 182 (365)
T ss_pred --CccHH--HHHHHHHHHHhccCCCHHHHHH----HHH-cCCCcccEEEeCChHHHHHHHHHh-----------------
Confidence 00111 12222 3589999999998886 211 234567899999996 43221110
Q ss_pred hhhHHHHHHHcCCCCCCCCCcEEEEEe-cC-CCccCHHHHHHHHHHhhc--cCcEEEEEcCCCcc--C-ccH--------
Q 002628 787 AENKESIRKHLGLSSADARKPLVGCIT-RL-VPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--H-IQV-------- 851 (899)
Q Consensus 787 ~~~K~aLRk~LGLs~~d~~kpLVgfVG-RL-~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~--~-Lqk-------- 851 (899)
...+..+++.+|.. .+++++.| |. ...||++.+++|+..+.+ .+++++++|.+... . +.+
T Consensus 183 ~~~~~~~~~~~~~~-----~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v 257 (365)
T TIGR00236 183 IAYSSPVLSEFGED-----KRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRV 257 (365)
T ss_pred hccchhHHHhcCCC-----CCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCE
Confidence 00123456667632 24555554 54 356999999999998864 36888887654211 0 000
Q ss_pred ---------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccC
Q 002628 852 ---------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 852 ---------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidg 887 (899)
+ .+++.||+++.|| |.+++|||++|+||+..
T Consensus 258 ~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~ 299 (365)
T TIGR00236 258 HLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVL 299 (365)
T ss_pred EEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEEC
Confidence 0 7889999999998 66789999999999763
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.03 E-value=2.2e-09 Score=132.30 Aligned_cols=207 Identities=18% Similarity=0.230 Sum_probs=132.4
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK 719 (899)
.=|+|-+||+|-.++ |.+++.. ....++-|.+|-. +|...+..| +|. ..-+-
T Consensus 231 ~gD~VWVHDYHL~Ll-P~~LR~~----~p~~~IGfFlHiP-----FPs~Eifr~-LP~-----------------r~elL 282 (934)
T PLN03064 231 EGDVVWCHDYHLMFL-PKCLKEY----NSNMKVGWFLHTP-----FPSSEIHRT-LPS-----------------RSELL 282 (934)
T ss_pred CCCEEEEecchhhHH-HHHHHHh----CCCCcEEEEecCC-----CCChHHHhh-CCc-----------------HHHHH
Confidence 348999999999888 5666542 3578999999964 233222111 111 01123
Q ss_pred HHhhhccEEEEeChhhHHhh-c-----cccccc---ccc--CCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhh
Q 002628 720 GAIVFSNIVTTVSPSYAQEG-G-----QGLHST---LNF--HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 788 (899)
Q Consensus 720 ~ai~~AD~VItVS~sya~e~-g-----~GL~~i---L~~--~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~ 788 (899)
.++..||.|-+-+..|++.+ . .|+... +.. +..++.++|-|||++.|..... ++ .. ..
T Consensus 283 ~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~-------~~-~v---~~ 351 (934)
T PLN03064 283 RSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALE-------TP-QV---QQ 351 (934)
T ss_pred HHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhc-------Ch-hH---HH
Confidence 45677888888888888761 0 011110 111 1234667889999887754210 00 00 11
Q ss_pred hHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc--C--cEEEEE-------cCCCcc-CccHH----
Q 002628 789 NKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--G--GQFILL-------GSSPVP-HIQVY---- 852 (899)
Q Consensus 789 ~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~--d--vqLVIV-------G~Gp~~-~Lqke---- 852 (899)
....++++++ ++++|+.|+||.+.||+...+.|+.++++. . .+++++ |+++.. .++.+
T Consensus 352 ~~~~lr~~~~------g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~ 425 (934)
T PLN03064 352 HIKELKERFA------GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEI 425 (934)
T ss_pred HHHHHHHHhC------CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHH
Confidence 2345777765 457999999999999999999999997752 2 234544 333321 11110
Q ss_pred -----------------------------HHHHhcCeeEEcCCcCcChHHHHHHccC-----CcccccCCCcc
Q 002628 853 -----------------------------PILLSSFSFLRKHIFNICNLYIKLGQGG-----DLTVNNNCEPW 891 (899)
Q Consensus 853 -----------------------------~iyaaADIfVlPS~~EpFGLV~LEAMg~-----gl~Vidgv~~~ 891 (899)
.+|+.||+|++||..|+|+||.+|+|+| |+.|+...+|-
T Consensus 426 V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGa 498 (934)
T PLN03064 426 VGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGA 498 (934)
T ss_pred HHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCch
Confidence 8999999999999999999999999998 67776666553
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.97 E-value=1.5e-08 Score=114.67 Aligned_cols=185 Identities=9% Similarity=-0.074 Sum_probs=113.8
Q ss_pred HHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccc
Q 002628 629 AALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQD 708 (899)
Q Consensus 629 AalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d 708 (899)
.+..+++ ..+||+|.++++.++.+ .+.. .++ ..++|+|+.+. .. + .+|
T Consensus 80 ~~~~~l~--~~kPd~vi~~g~~~~~~--~~a~-aa~--~~gip~v~~i~-P~-~-------waw---------------- 127 (385)
T TIGR00215 80 EVVQLAK--QAKPDLLVGIDAPDFNL--TKEL-KKK--DPGIKIIYYIS-PQ-V-------WAW---------------- 127 (385)
T ss_pred HHHHHHH--hcCCCEEEEeCCCCccH--HHHH-HHh--hCCCCEEEEeC-Cc-H-------hhc----------------
Confidence 3445555 46899999999644332 2211 111 35899986542 11 0 011
Q ss_pred cccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhh
Q 002628 709 NSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAE 788 (899)
Q Consensus 709 ~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~ 788 (899)
.. +.-+...+++|.|+++++...+.+ .....+..++.|++..+..... .
T Consensus 128 ---~~--~~~r~l~~~~d~v~~~~~~e~~~~--------~~~g~~~~~vGnPv~~~~~~~~------------------~ 176 (385)
T TIGR00215 128 ---RK--WRAKKIEKATDFLLAILPFEKAFY--------QKKNVPCRFVGHPLLDAIPLYK------------------P 176 (385)
T ss_pred ---Cc--chHHHHHHHHhHhhccCCCcHHHH--------HhcCCCEEEECCchhhhccccC------------------C
Confidence 00 112445678999999999765541 1112355667777743211000 1
Q ss_pred hHHHHHHHcCCCCCCCCCcEEEEEe--cCCC-ccCHHHHHHHHHHhhcc--CcEEEEEc-CCCcc-Ccc-----------
Q 002628 789 NKESIRKHLGLSSADARKPLVGCIT--RLVP-QKGVHLIRHAIYRTLEL--GGQFILLG-SSPVP-HIQ----------- 850 (899)
Q Consensus 789 ~K~aLRk~LGLs~~d~~kpLVgfVG--RL~~-qKGvdlLIeAi~~Lle~--dvqLVIVG-~Gp~~-~Lq----------- 850 (899)
.+...|+.+|+++ +.++|++.| |..+ .|++..+++|+..+.+. ++++++.| .+... .++
T Consensus 177 ~~~~~r~~lgl~~---~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 253 (385)
T TIGR00215 177 DRKSAREKLGIDH---NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQ 253 (385)
T ss_pred CHHHHHHHcCCCC---CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCc
Confidence 2445678899873 567776553 8887 89999999999988653 67776654 33211 110
Q ss_pred -------HHHHHHhcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 851 -------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 851 -------ke~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
...+|++||++|++| |.+.+|||++|+|+
T Consensus 254 v~~~~~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~ 289 (385)
T TIGR00215 254 LHLIDGDARKAMFAADAALLAS-----GTAALEAALIKTPM 289 (385)
T ss_pred EEEECchHHHHHHhCCEEeecC-----CHHHHHHHHcCCCE
Confidence 018999999999999 88888999999886
No 94
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.93 E-value=5.6e-09 Score=120.55 Aligned_cols=309 Identities=16% Similarity=0.121 Sum_probs=162.4
Q ss_pred CCCCCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHH---------CCCeEEEEeeCCCCCccccc-----ccccc-cc
Q 002628 506 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQK---------KGHLVEIVLPKYDCMQYDRI-----DDLRA-LD 570 (899)
Q Consensus 506 ~~~~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk---------~GHeVtVItP~Y~~~~~~~v-----~~L~~-l~ 570 (899)
...++.++++++.+.. ..||.++-+-+-+-+++. .||.|.+++-.+.......+ ..+.. ..
T Consensus 29 t~~~~~~~~~~~~~~~----~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~ 104 (495)
T KOG0853|consen 29 TPEKPFEHVTFIHPDL----GIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPP 104 (495)
T ss_pred cccccchhheeecccc----ccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCc
Confidence 3356778999987654 579999999999999999 99999999976654421100 00110 11
Q ss_pred eeeeeccCCccccceeeee--eeCCeeEEEeCCCCCCcccccC-CCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEEC
Q 002628 571 VVVESYFDGRLFKNKVWVS--TIEGLPVYFIEPHHPDKFFWRG-QFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCH 647 (899)
Q Consensus 571 v~v~syfdG~~~~~~V~~~--~veGV~V~~L~~~~p~~~F~r~-~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~H 647 (899)
+.+.+++--.... ..+.. ...++.+.++... + .+... .++....+ |..++..++++.+. ||++|-|
T Consensus 105 i~vv~~~lP~~~~-~~~~~~~~~~~~~il~~~~~-~--~~k~~~~~d~~i~d------~~~~~~~l~~~~~~-p~~~~~i 173 (495)
T KOG0853|consen 105 ILVVGDWLPRAMG-QFLEQVAGCAYLRILRIPFG-I--LFKWAEKVDPIIED------FVSACVPLLKQLSG-PDVIIKI 173 (495)
T ss_pred eEEEEeecCcccc-hhhhhhhccceeEEEEeccc-h--hhhhhhhhceeecc------hHHHHHHHHHHhcC-Cccccee
Confidence 1111111000000 00000 1123344433210 0 01000 01111011 22233333444444 9999999
Q ss_pred CCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccE
Q 002628 648 DWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNI 727 (899)
Q Consensus 648 dw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~ 727 (899)
.|.+.+...++.. ..+.+-+++-|-+...- . .....+|.
T Consensus 174 ~~~~h~~~~lla~------r~g~~~~l~~~~l~~~e------~-----------------------------e~~~~~~~ 212 (495)
T KOG0853|consen 174 YFYCHFPDSLLAK------RLGVLKVLYRHALDKIE------E-----------------------------ETTGLAWK 212 (495)
T ss_pred EEeccchHHHhcc------ccCccceeehhhhhhhh------h-----------------------------hhhhccce
Confidence 9998886555432 14677778777543110 0 00112344
Q ss_pred EEEeChhhHHhhccccccc-cccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCC
Q 002628 728 VTTVSPSYAQEGGQGLHST-LNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARK 806 (899)
Q Consensus 728 VItVS~sya~e~g~GL~~i-L~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~k 806 (899)
+++-|...+..+ ... ......++.+.+-+||.+.+.|. .|.+ +.+-+...|.+.|.. ...
T Consensus 213 ~~~ns~~~~~~f----~~~~~~L~~~d~~~~y~ei~~s~~~~~-------~~~~-----~~~~~~~~r~~~~v~---~~d 273 (495)
T KOG0853|consen 213 ILVNSYFTKRQF----KATFVSLSNSDITSTYPEIDGSWFTYG-------QYES-----HLELRLPVRLYRGVS---GID 273 (495)
T ss_pred Eecchhhhhhhh----hhhhhhcCCCCcceeeccccchhcccc-------cccc-----chhcccccceeeeec---ccc
Confidence 444444333321 111 11123348888999998766551 1111 111111223334544 234
Q ss_pred cEEEEEecCCCccCHHHHHHHHHHhhc-------cCcEEEEEcC-CCccC-------ccH------H-------------
Q 002628 807 PLVGCITRLVPQKGVHLIRHAIYRTLE-------LGGQFILLGS-SPVPH-------IQV------Y------------- 852 (899)
Q Consensus 807 pLVgfVGRL~~qKGvdlLIeAi~~Lle-------~dvqLVIVG~-Gp~~~-------Lqk------e------------- 852 (899)
.++.-+-|+.|.||++++++|+..+.. ...+++++|+ |.+.. +++ +
T Consensus 274 ~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s 353 (495)
T KOG0853|consen 274 RFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPS 353 (495)
T ss_pred eEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecC
Confidence 678889999999999999999988754 2467888884 22210 110 0
Q ss_pred -------HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCCC
Q 002628 853 -------PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCE 889 (899)
Q Consensus 853 -------~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv~ 889 (899)
.+++.+...+..-..|+||+|.+|||++|+||+..++
T Consensus 354 ~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~ 397 (495)
T KOG0853|consen 354 TTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNN 397 (495)
T ss_pred CchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecC
Confidence 4444555544444449999999999999888765443
No 95
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.84 E-value=3.2e-08 Score=101.45 Aligned_cols=135 Identities=24% Similarity=0.291 Sum_probs=96.8
Q ss_pred hccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCC
Q 002628 724 FSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSAD 803 (899)
Q Consensus 724 ~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d 803 (899)
..+.+++.+....... ... ....++.++|||++.+.+.+. ..++.. +
T Consensus 150 ~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~-~ 196 (381)
T COG0438 150 LADRVIAVSPALKELL----EAL--GVPNKIVVIPNGIDTEKFAPA--------------------------RIGLLP-E 196 (381)
T ss_pred cccEEEECCHHHHHHH----HHh--CCCCCceEecCCcCHHHcCcc--------------------------ccCCCc-c
Confidence 3677888887653321 111 112378899999998876542 111221 1
Q ss_pred CCCcEEEEEecCCCccCHHHHHHHHHHhhcc--CcEEEEEcCCCcc--Cc-------------------c-HH--HHHHh
Q 002628 804 ARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVP--HI-------------------Q-VY--PILLS 857 (899)
Q Consensus 804 ~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~--dvqLVIVG~Gp~~--~L-------------------q-ke--~iyaa 857 (899)
.....++++||+.+.||++.+++|+..+... ++.++++|.|+.. .+ . .. .+++.
T Consensus 197 ~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 276 (381)
T COG0438 197 GGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLAS 276 (381)
T ss_pred cCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHh
Confidence 1136899999999999999999999998764 3799999998752 00 0 01 78888
Q ss_pred cCeeEEcCCcCcChHHHHHHccCCcccccC-CCcc
Q 002628 858 SFSFLRKHIFNICNLYIKLGQGGDLTVNNN-CEPW 891 (899)
Q Consensus 858 ADIfVlPS~~EpFGLV~LEAMg~gl~Vidg-v~~~ 891 (899)
||++++||.+|+||++++|||++|+||+.. ++++
T Consensus 277 ~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~ 311 (381)
T COG0438 277 ADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGI 311 (381)
T ss_pred CCEEEeccccccchHHHHHHHhcCCcEEECCCCCh
Confidence 999999999999999999999999998554 4334
No 96
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.73 E-value=3.4e-07 Score=94.49 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=109.7
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
||.+|.+--.|. ..||.+++|.+|+..|+++||+|+|.+........ .....
T Consensus 3 kIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~---------------------------~~~y~ 54 (185)
T PF09314_consen 3 KIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK---------------------------EFEYN 54 (185)
T ss_pred eEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC---------------------------CcccC
Confidence 799999987785 68999999999999999999999999865322110 00135
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHH---HHHhCCCceEEEECCCc-hhhHHHHHHHhhccCCCC
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL---LLQAGKQPDIIHCHDWQ-TAFVAPLYWDLYVPKGLN 668 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalel---Lrq~~~kPDIIH~Hdw~-talVapl~~~~ya~~gL~ 668 (899)
|+.+..++.+ .. + ....+.+...++... .+....++||||+|... ++++.|+ .+.+. ..
T Consensus 55 gv~l~~i~~~------~~----g---~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~-~r~~~---~~ 117 (185)
T PF09314_consen 55 GVRLVYIPAP------KN----G---SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPF-LRKLR---KK 117 (185)
T ss_pred CeEEEEeCCC------CC----C---chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHH-HHhhh---hc
Confidence 6666656421 11 1 112223323333332 33223468999999876 3444333 23221 24
Q ss_pred CCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccc
Q 002628 669 SARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLN 748 (899)
Q Consensus 669 giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~ 748 (899)
|.|+++++|+.++... +.|.+...+ - .--++.++++||.+|+.|+...+. +....
T Consensus 118 g~~v~vN~DGlEWkR~-------KW~~~~k~~------------l-k~~E~~avk~ad~lIaDs~~I~~y----~~~~y- 172 (185)
T PF09314_consen 118 GGKVVVNMDGLEWKRA-------KWGRPAKKY------------L-KFSEKLAVKYADRLIADSKGIQDY----IKERY- 172 (185)
T ss_pred CCcEEECCCcchhhhh-------hcCHHHHHH------------H-HHHHHHHHHhCCEEEEcCHHHHHH----HHHHc-
Confidence 6799999999875421 111111111 0 113567889999999999988776 22221
Q ss_pred cCCCcEEEEecCcc
Q 002628 749 FHSKKFVGILNGID 762 (899)
Q Consensus 749 ~~~~KI~VIpNGID 762 (899)
...+..+|++|-|
T Consensus 173 -~~~~s~~IaYGad 185 (185)
T PF09314_consen 173 -GRKKSTFIAYGAD 185 (185)
T ss_pred -CCCCcEEecCCCC
Confidence 1367889999976
No 97
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.58 E-value=1.8e-06 Score=82.50 Aligned_cols=137 Identities=25% Similarity=0.391 Sum_probs=80.0
Q ss_pred eEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeC
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIE 592 (899)
Q Consensus 513 KILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~ve 592 (899)
|||+|+..+ ..++..++++|.+.||+|+|+++..+.... ...+
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~----------------------------~~~~ 43 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKY----------------------------EIIE 43 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhh----------------------------hHhC
Confidence 688887743 347889999999999999999985432110 0124
Q ss_pred CeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCch-hhHHHHHHHhhccCCCCC-C
Q 002628 593 GLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQT-AFVAPLYWDLYVPKGLNS-A 670 (899)
Q Consensus 593 GV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~t-alVapl~~~~ya~~gL~g-i 670 (899)
|+.++.++.. +.... ..+.++ ....+++ ..+|||||+|...+ ++++.++.. +.+ +
T Consensus 44 ~i~~~~~~~~-------~k~~~------~~~~~~--~l~k~ik--~~~~DvIh~h~~~~~~~~~~l~~~------~~~~~ 100 (139)
T PF13477_consen 44 GIKVIRLPSP-------RKSPL------NYIKYF--RLRKIIK--KEKPDVIHCHTPSPYGLFAMLAKK------LLKNK 100 (139)
T ss_pred CeEEEEecCC-------CCccH------HHHHHH--HHHHHhc--cCCCCEEEEecCChHHHHHHHHHH------HcCCC
Confidence 6666655311 00110 111111 2334444 35799999999775 555433322 234 8
Q ss_pred eEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeC
Q 002628 671 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVS 732 (899)
Q Consensus 671 PiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS 732 (899)
|+|+|.|+..+-.......+ .-.+.+.+++.||.|++.|
T Consensus 101 ~~i~~~hg~~~~~~~~~~~~-----------------------~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 101 KVIYTVHGSDFYNSSKKKKL-----------------------KKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred CEEEEecCCeeecCCchHHH-----------------------HHHHHHHHHHhCCEEEEcC
Confidence 99999998753111000000 0124577888999999876
No 98
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.57 E-value=9.5e-07 Score=97.84 Aligned_cols=185 Identities=11% Similarity=-0.043 Sum_probs=104.9
Q ss_pred CCCc-eEEEECCCch-h-hHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccc
Q 002628 638 GKQP-DIIHCHDWQT-A-FVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDR 714 (899)
Q Consensus 638 ~~kP-DIIH~Hdw~t-a-lVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~ 714 (899)
+.+| ||||+|.+.. + .+...+..... + .++|+|+++|+...... ...+ . .
T Consensus 61 ~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k--~-~~~k~i~~ihD~~~~~~------~~~~----------------~--~ 113 (333)
T PRK09814 61 SLKPGDIVIFQFPTWNGFEFDRLFVDKLK--K-KQVKIIILIHDIEPLRF------DSNY----------------Y--L 113 (333)
T ss_pred cCCCCCEEEEECCCCchHHHHHHHHHHHH--H-cCCEEEEEECCcHHHhc------cccc----------------h--h
Confidence 3567 9999997432 1 11111212211 1 37999999998642210 0000 0 0
Q ss_pred hhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHH
Q 002628 715 INPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIR 794 (899)
Q Consensus 715 in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLR 794 (899)
...++..++.||.||++|+.+++. +.. .+....++.+++|+.+.....+ +
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~----l~~-~g~~~~~i~~~~~~~~~~~~~~-------------------------~ 163 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDR----LVE-EGLTTDKIIVQGIFDYLNDIEL-------------------------V 163 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHH----HHH-cCCCcCceEecccccccccccc-------------------------c
Confidence 234567788999999999998876 211 1123456666655443211000 0
Q ss_pred HHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhccCcEEEEEcCCCccC-c----------cHH---HHHHhcCe
Q 002628 795 KHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPH-I----------QVY---PILLSSFS 860 (899)
Q Consensus 795 k~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~~-L----------qke---~iyaaADI 860 (899)
. . ....+.|+|+||+....++ .+ ...+++|+|+|+|+... . ..+ .+|+. |+
T Consensus 164 ~---~---~~~~~~i~yaG~l~k~~~l---~~-----~~~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l~~-~~ 228 (333)
T PRK09814 164 K---T---PSFQKKINFAGNLEKSPFL---KN-----WSQGIKLTVFGPNPEDLENSANISYKGWFDPEELPNELSK-GF 228 (333)
T ss_pred c---c---ccCCceEEEecChhhchHH---Hh-----cCCCCeEEEECCCccccccCCCeEEecCCCHHHHHHHHhc-Cc
Confidence 0 0 1134689999999954321 11 12478999999998541 1 111 56766 76
Q ss_pred eEEcCCc-----------CcChHHHHHHccCCcccccCCCccccc
Q 002628 861 FLRKHIF-----------NICNLYIKLGQGGDLTVNNNCEPWLHH 894 (899)
Q Consensus 861 fVlPS~~-----------EpFGLV~LEAMg~gl~Vidgv~~~l~~ 894 (899)
.+++... -.+|--..++||+|+||+....|.+..
T Consensus 229 gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~ 273 (333)
T PRK09814 229 GLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIAD 273 (333)
T ss_pred CeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHH
Confidence 6665321 245666888999999997766655543
No 99
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.40 E-value=4.4e-05 Score=85.87 Aligned_cols=170 Identities=19% Similarity=0.165 Sum_probs=92.7
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~ 717 (899)
..+|||||++.-+.++. +.+... +.++|+++.-.|.. .| + .|
T Consensus 89 ~~kPdvvi~~Ggy~s~p-~~~aa~-----~~~~p~~i~e~n~~-~g-----------~-------------------~n- 130 (352)
T PRK12446 89 KLKPDVIFSKGGFVSVP-VVIGGW-----LNRVPVLLHESDMT-PG-----------L-------------------AN- 130 (352)
T ss_pred hcCCCEEEecCchhhHH-HHHHHH-----HcCCCEEEECCCCC-cc-----------H-------------------HH-
Confidence 46899999997554432 333333 35789887655531 11 0 01
Q ss_pred hhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHc
Q 002628 718 LKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHL 797 (899)
Q Consensus 718 lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~L 797 (899)
+...++++.|.+-=+...+. .+..++.++-|.|..+...+ .+...++.+
T Consensus 131 -r~~~~~a~~v~~~f~~~~~~----------~~~~k~~~tG~Pvr~~~~~~--------------------~~~~~~~~~ 179 (352)
T PRK12446 131 -KIALRFASKIFVTFEEAAKH----------LPKEKVIYTGSPVREEVLKG--------------------NREKGLAFL 179 (352)
T ss_pred -HHHHHhhCEEEEEccchhhh----------CCCCCeEEECCcCCcccccc--------------------cchHHHHhc
Confidence 23356677765433322111 12356666656665432211 133456778
Q ss_pred CCCCCCCCCcEEEEEe-cCCCccCH-HHHHHHHHHhhccCcEEEE-EcCCCccC-------------ccH--HHHHHhcC
Q 002628 798 GLSSADARKPLVGCIT-RLVPQKGV-HLIRHAIYRTLELGGQFIL-LGSSPVPH-------------IQV--YPILLSSF 859 (899)
Q Consensus 798 GLs~~d~~kpLVgfVG-RL~~qKGv-dlLIeAi~~Lle~dvqLVI-VG~Gp~~~-------------Lqk--e~iyaaAD 859 (899)
|+++ ++|+|+.+| .... +.+ +.+.+++..+. .+++++. .|...... +.. ..+|+.||
T Consensus 180 ~l~~---~~~~iLv~GGS~Ga-~~in~~~~~~l~~l~-~~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~~~ad 254 (352)
T PRK12446 180 GFSR---KKPVITIMGGSLGA-KKINETVREALPELL-LKYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDILAITD 254 (352)
T ss_pred CCCC---CCcEEEEECCccch-HHHHHHHHHHHHhhc-cCcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHHHhCC
Confidence 8863 567665554 4433 334 33334444443 2466655 47542110 111 18999999
Q ss_pred eeEEcCCcCcChHHHHHHccCCcccc
Q 002628 860 SFLRKHIFNICNLYIKLGQGGDLTVN 885 (899)
Q Consensus 860 IfVlPS~~EpFGLV~LEAMg~gl~Vi 885 (899)
++|.-+ -|.|..|++++|+|.+
T Consensus 255 lvIsr~----G~~t~~E~~~~g~P~I 276 (352)
T PRK12446 255 FVISRA----GSNAIFEFLTLQKPML 276 (352)
T ss_pred EEEECC----ChhHHHHHHHcCCCEE
Confidence 988763 3778899998887763
No 100
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=2.7e-06 Score=102.51 Aligned_cols=355 Identities=18% Similarity=0.177 Sum_probs=206.5
Q ss_pred CCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccc-ccc-------------------c-----cccceeeeec
Q 002628 522 APVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDR-IDD-------------------L-----RALDVVVESY 576 (899)
Q Consensus 522 ~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~-v~~-------------------L-----~~l~v~v~sy 576 (899)
-|... ||+|+...+-.+.++..|...+.+...|..+--+. +.+ . ...++++..
T Consensus 110 ~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g- 187 (750)
T COG0058 110 DPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPG- 187 (750)
T ss_pred Ccccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEe-
Confidence 35434 99999999999999999999999987766531100 000 0 012223322
Q ss_pred cCCccccceeeeeeeCCeeEEEeCCCCCCc-cccc---CCCCCCCcchhh---HHHHHHHHHHHHHHhC------CCceE
Q 002628 577 FDGRLFKNKVWVSTIEGLPVYFIEPHHPDK-FFWR---GQFYGEHDDFRR---FSFFSRAALELLLQAG------KQPDI 643 (899)
Q Consensus 577 fdG~~~~~~V~~~~veGV~V~~L~~~~p~~-~F~r---~~iYg~~Dd~~R---~s~FsrAalelLrq~~------~kPDI 643 (899)
++......++|...+..+++++.+...|+. ...+ ...|+....-.| -.+|..+.+..|.+.+ ..+.+
T Consensus 188 ~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds~elRl~Qeyfl~~agvq~I~~~~~~~~~~~~~~~ 267 (750)
T COG0058 188 YDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDSKELRLKQEYFLGSAGVQDILARGHLEHHDLDVLA 267 (750)
T ss_pred ccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCcHHHHHhhhheeeeHHHHHHHHHhhhccccccchh
Confidence 232445678888877778888887544321 0111 135654212233 2355666677766653 67778
Q ss_pred EEECCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCCCCCC--CChhhhhhc-----C---------Cccc
Q 002628 644 IHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQGT--APAKELASC-----G---------LDVQ 698 (899)
Q Consensus 644 IH~Hdw~talVapl~~~~ya~~-g--------L~giPiV~TIHn~~fqG~--~p~~~L~~~-----G---------L~~~ 698 (899)
-|.++-|++++.|-..+..... + ....-+++|.|+....|. +|...+... + ++..
T Consensus 268 ~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~~l~~~ 347 (750)
T COG0058 268 DHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINARFLPEV 347 (750)
T ss_pred hhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhhhhHHH
Confidence 8899999988766655522111 1 134578999998854442 343322210 0 0000
Q ss_pred ccCCcc-cccccccccchhhhhHHhhhccEEEEeChhhHHhh-ccccccccccCCCcEEEEecCccCCCCCCCcchhhhh
Q 002628 699 QLNRPD-RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKV 776 (899)
Q Consensus 699 ~l~~pd-rL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~ 776 (899)
....+. .........-+++--.|++.|..|..||.-+.+-. .......-...+.||.-+.|||....|--..-+.+..
T Consensus 348 ~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~p~~i~nvTNGIt~rrWl~~~n~~L~~ 427 (750)
T COG0058 348 RLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPANPGLAD 427 (750)
T ss_pred HhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccCccccccccCCcCCchhhhhhhHHHHH
Confidence 000000 00000011115666678888999999998877640 0000011112378899999999999994322222322
Q ss_pred hcccc--------------------c------cc-chhhhHHHH----HHHcCCCCCCCCCcEEEEEecCCCccCHHHHH
Q 002628 777 QYNAN--------------------D------LQ-GKAENKESI----RKHLGLSSADARKPLVGCITRLVPQKGVHLIR 825 (899)
Q Consensus 777 ~ysad--------------------d------l~-GK~~~K~aL----Rk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLI 825 (899)
.++.. + ++ -|..+|..| ..+.|+. .+|+...++++-|++.+|..++.+
T Consensus 428 ~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~-~~p~~lfd~~~kRiheYKRq~Lnl 506 (750)
T COG0058 428 LLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIE-VDPNALFDGQARRIHEYKRQLLNL 506 (750)
T ss_pred HHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cCCCcceeeeehhhhhhhhhHHhH
Confidence 22211 0 11 123344332 3345765 467889999999999999999887
Q ss_pred HHHHHhh---c----cCcEEEEEcCCCccCccH-------------------------------HHHHHhcCeeEEcCC-
Q 002628 826 HAIYRTL---E----LGGQFILLGSSPVPHIQV-------------------------------YPILLSSFSFLRKHI- 866 (899)
Q Consensus 826 eAi~~Ll---e----~dvqLVIVG~Gp~~~Lqk-------------------------------e~iyaaADIfVlPS~- 866 (899)
.-+.++- . ..++++++|...+.+... +.++.+|||...-|.
T Consensus 507 ~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweqis~a 586 (750)
T COG0058 507 LDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLAELLIPAADVWEQIPTA 586 (750)
T ss_pred hhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHHHhhcccccccccCCCC
Confidence 5444432 2 247778888754322110 189999999999987
Q ss_pred -cCcChHHHHHHcc
Q 002628 867 -FNICNLYIKLGQG 879 (899)
Q Consensus 867 -~EpFGLV~LEAMg 879 (899)
.|++|.+-|.||=
T Consensus 587 ~~EASGTsnMK~al 600 (750)
T COG0058 587 GKEASGTSNMKAAL 600 (750)
T ss_pred CccccCcCcchHHh
Confidence 6999999999883
No 101
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.38 E-value=5.7e-07 Score=85.12 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=59.4
Q ss_pred CcEEEEEecCCCccCHHHHHH-HHHHhhc--cCcEEEEEcCCCcc--Cc----------cHH--HHHHhcCeeEEcCC-c
Q 002628 806 KPLVGCITRLVPQKGVHLIRH-AIYRTLE--LGGQFILLGSSPVP--HI----------QVY--PILLSSFSFLRKHI-F 867 (899)
Q Consensus 806 kpLVgfVGRL~~qKGvdlLIe-Ai~~Lle--~dvqLVIVG~Gp~~--~L----------qke--~iyaaADIfVlPS~-~ 867 (899)
.++|+++|++.+.||++.+++ |+.++.+ .+++|+|+|.++.. .+ ..+ .+++.||++++|+. .
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~ 81 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFN 81 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCC
Confidence 368999999999999999999 9988875 37999999998752 11 011 89999999999996 6
Q ss_pred CcChHHHHHHccCCcccccC
Q 002628 868 NICNLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 868 EpFGLV~LEAMg~gl~Vidg 887 (899)
++++...+|||++|+||+..
T Consensus 82 ~~~~~k~~e~~~~G~pvi~~ 101 (135)
T PF13692_consen 82 EGFPNKLLEAMAAGKPVIAS 101 (135)
T ss_dssp SCC-HHHHHHHCTT--EEEE
T ss_pred CcCcHHHHHHHHhCCCEEEC
Confidence 89999999999999988543
No 102
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.35 E-value=1.3e-05 Score=88.68 Aligned_cols=205 Identities=15% Similarity=0.078 Sum_probs=118.6
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINP 717 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~ 717 (899)
+..|||..--.-.+.-. |++.. +.++|++.-+|-....... .+.+...... .+....++. +|..+..
T Consensus 148 r~~Pdi~IDtMGY~fs~-p~~r~------l~~~~V~aYvHYP~iS~DM-L~~l~qrq~s--~~l~~~Kla---Y~rlFa~ 214 (465)
T KOG1387|consen 148 RFPPDIFIDTMGYPFSY-PIFRR------LRRIPVVAYVHYPTISTDM-LKKLFQRQKS--GILVWGKLA---YWRLFAL 214 (465)
T ss_pred hCCchheEecCCCcchh-HHHHH------HccCceEEEEecccccHHH-HHHHHhhhhc--chhhhHHHH---HHHHHHH
Confidence 57899876543232222 44432 4689999999965321110 0111110000 000001111 2222222
Q ss_pred h-hHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHH
Q 002628 718 L-KGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKH 796 (899)
Q Consensus 718 l-K~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~ 796 (899)
+ +.+-..||.|++.|...... ...++. ..+..+|+...+++.| .+.
T Consensus 215 lY~~~G~~ad~vm~NssWT~nH----I~qiW~--~~~~~iVyPPC~~e~l---------------------------ks~ 261 (465)
T KOG1387|consen 215 LYQSAGSKADIVMTNSSWTNNH----IKQIWQ--SNTCSIVYPPCSTEDL---------------------------KSK 261 (465)
T ss_pred HHHhccccceEEEecchhhHHH----HHHHhh--ccceeEEcCCCCHHHH---------------------------HHH
Confidence 2 34445688888888876654 222332 2567777766666532 223
Q ss_pred cCCCCCCCCCcEEEEEecCCCccCHH-HHHHHHHHhhc------cCcEEEEEcCCCcc-C------ccH---H-------
Q 002628 797 LGLSSADARKPLVGCITRLVPQKGVH-LIRHAIYRTLE------LGGQFILLGSSPVP-H------IQV---Y------- 852 (899)
Q Consensus 797 LGLs~~d~~kpLVgfVGRL~~qKGvd-lLIeAi~~Lle------~dvqLVIVG~Gp~~-~------Lqk---e------- 852 (899)
+|-. +.+.+.++++|.+.|+|... +=+.|+..... .+++|+++|+.... + ++. +
T Consensus 262 ~~te--~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v 339 (465)
T KOG1387|consen 262 FGTE--GERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHV 339 (465)
T ss_pred hccc--CCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccce
Confidence 3321 34568899999999999999 33445544332 37999999985322 1 110 0
Q ss_pred ------------HHHHhcCeeEEcCCcCcChHHHHHHccCC-cccccCCCc
Q 002628 853 ------------PILLSSFSFLRKHIFNICNLYIKLGQGGD-LTVNNNCEP 890 (899)
Q Consensus 853 ------------~iyaaADIfVlPS~~EpFGLV~LEAMg~g-l~Vidgv~~ 890 (899)
.+|..|-+.|..=..|-||+.++|+||+| .||.++.+|
T Consensus 340 ~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgG 390 (465)
T KOG1387|consen 340 QFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGG 390 (465)
T ss_pred EEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCC
Confidence 88999999999988999999999999888 444444433
No 103
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.23 E-value=3.5e-05 Score=94.15 Aligned_cols=250 Identities=17% Similarity=0.143 Sum_probs=152.6
Q ss_pred CceEEEECCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCCCCC--CCChhhhhh----------------
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG--TAPAKELAS---------------- 692 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~-g--------L~giPiV~TIHn~~fqG--~~p~~~L~~---------------- 692 (899)
++.+||.++-|++++.|-+.+.+... + .....+++|.|+....| .+|.+.+..
T Consensus 300 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~ 379 (797)
T cd04300 300 DKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRF 379 (797)
T ss_pred CceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHH
Confidence 78999999999988766665543321 1 23557999999885333 233332221
Q ss_pred -------cCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccc-cccccccCCCcEEEEecCccCC
Q 002628 693 -------CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQG-LHSTLNFHSKKFVGILNGIDTD 764 (899)
Q Consensus 693 -------~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~G-L~~iL~~~~~KI~VIpNGID~e 764 (899)
.+.+...+.++..+.+ ...+.+++-..|+..|..|..||.-+.+-...- +.......+.|+.-+.|||...
T Consensus 380 ~~~~~~~~~~~~~~~~~l~ii~~-~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~df~~l~P~kf~n~TNGVt~r 458 (797)
T cd04300 380 LEEVRAKYPGDEDRIRRMSIIEE-GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPR 458 (797)
T ss_pred HHHHHHhcCCCHHHHHhhccccc-CCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhHHHHHhhCCCccCCcCCCCCcc
Confidence 1111111111111111 112357888889999999999998777641000 1111123468889999999998
Q ss_pred CCC----CCcchhhhhhcc----------------ccc-------ccchhhhHHHH----HHHcCCCCCCCCCcEEEEEe
Q 002628 765 AWN----PATDTFLKVQYN----------------AND-------LQGKAENKESI----RKHLGLSSADARKPLVGCIT 813 (899)
Q Consensus 765 ~f~----P~~d~~L~~~ys----------------add-------l~GK~~~K~aL----Rk~LGLs~~d~~kpLVgfVG 813 (899)
.|- |.-...+..... ++| .+-|..+|..| ++..|+. .+|+....+++-
T Consensus 459 rWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~-ldp~slfdvq~K 537 (797)
T cd04300 459 RWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVE-VDPDSLFDVQVK 537 (797)
T ss_pred hhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCCCccEEEEee
Confidence 885 221122211110 111 12244555544 5567876 577888999999
Q ss_pred cCCCccCHHH-HHHHHHHh---hc------cCcEEEEEcCCCccCc-c-----------H--------------------
Q 002628 814 RLVPQKGVHL-IRHAIYRT---LE------LGGQFILLGSSPVPHI-Q-----------V-------------------- 851 (899)
Q Consensus 814 RL~~qKGvdl-LIeAi~~L---le------~dvqLVIVG~Gp~~~L-q-----------k-------------------- 851 (899)
|++.+|...+ +++.+.+. .+ .+.+++++|...+.+. . +
T Consensus 538 R~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY 617 (797)
T cd04300 538 RIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFLPNY 617 (797)
T ss_pred echhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEEeCCC
Confidence 9999999999 76665554 32 2478899997532211 0 0
Q ss_pred -----HHHHHhcCeeEEcCC--cCcChHHHHHHccCCcccccCCCcc
Q 002628 852 -----YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVNNNCEPW 891 (899)
Q Consensus 852 -----e~iyaaADIfVlPS~--~EpFGLV~LEAMg~gl~Vidgv~~~ 891 (899)
+.++.+|||...-|. .|++|..-|-+|-=|...+..-.||
T Consensus 618 ~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGa 664 (797)
T cd04300 618 NVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGA 664 (797)
T ss_pred ChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccch
Confidence 189999999999997 7999999999985554444444444
No 104
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=3.8e-07 Score=102.74 Aligned_cols=167 Identities=21% Similarity=0.236 Sum_probs=95.0
Q ss_pred ceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCccccc------ccccccc
Q 002628 641 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQ------DNSAHDR 714 (899)
Q Consensus 641 PDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~------d~~~~~~ 714 (899)
.=|-|.|.|+++.. ..+.+. +...+-+|+|.|.+-. |++ .|.-....+.+.+.+- ..-.+.+
T Consensus 175 ~vVahFHEW~AGVg-L~l~R~----rrl~iaTifTTHATLL-GRy------LCA~~~DfYNnLd~f~vD~EAGkr~IYHr 242 (692)
T KOG3742|consen 175 AVVAHFHEWQAGVG-LILCRA----RRLDIATIFTTHATLL-GRY------LCAGNVDFYNNLDSFDVDKEAGKRQIYHR 242 (692)
T ss_pred HHHHHHHHHHhccc-hheehh----cccceEEEeehhHHHH-HHH------HhcccchhhhchhhcccchhhccchhHHH
Confidence 45679999998773 222222 1246788999996531 111 0111111121111110 0125667
Q ss_pred hhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchhhhHHHHH
Q 002628 715 INPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIR 794 (899)
Q Consensus 715 in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLR 794 (899)
+.+++++...|+..+|||.-.+-+ -+.+|+..+ =.+.|||+++..|... ..|.--+-..|.......|
T Consensus 243 YC~ERaa~h~AhVFTTVSeITa~E----AeHlLkRKP--D~itPNGLNV~KFsA~------HEFQNLHA~~KekIndFVR 310 (692)
T KOG3742|consen 243 YCLERAAAHTAHVFTTVSEITALE----AEHLLKRKP--DVITPNGLNVKKFSAV------HEFQNLHAQKKEKINDFVR 310 (692)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHH----HHHHHhcCC--CeeCCCCcceeehhHH------HHHHHHHHHHHHHHHHHhh
Confidence 888999999999999999976655 223443333 3577999999877542 1111001112223333455
Q ss_pred HHc-C-CCCCCC-CCcEEEEEecCC-CccCHHHHHHHHHHhh
Q 002628 795 KHL-G-LSSADA-RKPLVGCITRLV-PQKGVHLIRHAIYRTL 832 (899)
Q Consensus 795 k~L-G-Ls~~d~-~kpLVgfVGRL~-~qKGvdlLIeAi~~Ll 832 (899)
-+| | +.- +- ....+...||.. ..||.|.+|+|++++-
T Consensus 311 GHF~GhlDF-dLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN 351 (692)
T KOG3742|consen 311 GHFHGHLDF-DLDKTLYFFIAGRYEFSNKGADMFIESLARLN 351 (692)
T ss_pred hhccccccc-cccceEEEEEeeeeeeccCchHHHHHHHHHhH
Confidence 554 2 111 11 334577789998 5999999999999873
No 105
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.10 E-value=4.8e-05 Score=93.01 Aligned_cols=240 Identities=17% Similarity=0.145 Sum_probs=146.3
Q ss_pred CceEEEECCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCCCCCC--CChhhhhhc-----CCc----ccc
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQGT--APAKELASC-----GLD----VQQ 699 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~-g--------L~giPiV~TIHn~~fqG~--~p~~~L~~~-----GL~----~~~ 699 (899)
.+-+||.++-|++++.|-+.+.+... + .....+++|.|+....|. +|.+.+... ++. ...
T Consensus 313 ~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~~f 392 (815)
T PRK14986 313 DKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF 392 (815)
T ss_pred cccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHHHH
Confidence 45699999999988766666543321 1 235679999998854332 333322211 100 000
Q ss_pred c--------------CCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhcccccccc----ccCCCcEEEEecCc
Q 002628 700 L--------------NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTL----NFHSKKFVGILNGI 761 (899)
Q Consensus 700 l--------------~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL----~~~~~KI~VIpNGI 761 (899)
+ .+...+.+ .....+++-..|+..|..|..||.-+.+-.. ...+ ...++|+.-|.|||
T Consensus 393 l~~~~~~~~~~~~~~~~~sii~~-~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~---~~~f~df~~l~P~kf~niTNGV 468 (815)
T PRK14986 393 LKTLQEQYPNDTDLLGRASIIDE-SNGRRVRMAWLAVVVSHKVNGVSELHSNLMV---QSLFADFAKIFPGRFCNVTNGV 468 (815)
T ss_pred HHHHHHhCCCcHHHHhhhhcccc-CCCCEEeeHHHHhhccchhhHHHHHHHHHHH---HHHHHHHHhhCCCcccccCCCC
Confidence 0 00000011 0112577778888999999999987765310 1121 13577888899999
Q ss_pred cCCCCC----CCcchhhhhhcc-------------------cc---c-ccchhhhHHHH----HHHcCCCCCCCCCcEEE
Q 002628 762 DTDAWN----PATDTFLKVQYN-------------------AN---D-LQGKAENKESI----RKHLGLSSADARKPLVG 810 (899)
Q Consensus 762 D~e~f~----P~~d~~L~~~ys-------------------ad---d-l~GK~~~K~aL----Rk~LGLs~~d~~kpLVg 810 (899)
....|- |.-...+..... ++ . .+-|..+|..| +++.|.. .+++...++
T Consensus 469 ~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~-ldp~sLfd~ 547 (815)
T PRK14986 469 TPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVV-VNPKALFDV 547 (815)
T ss_pred ChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCcccceee
Confidence 999886 432222221111 01 0 11234445443 5566876 477888899
Q ss_pred EEecCCCccCHHH-HHHHHHHh---hc------cCcEEEEEcCCCccCc------------cH-----------------
Q 002628 811 CITRLVPQKGVHL-IRHAIYRT---LE------LGGQFILLGSSPVPHI------------QV----------------- 851 (899)
Q Consensus 811 fVGRL~~qKGvdl-LIeAi~~L---le------~dvqLVIVG~Gp~~~L------------qk----------------- 851 (899)
++-|++.+|...+ ++..+.++ .+ .+.+++++|...+.+. .+
T Consensus 548 qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFl 627 (815)
T PRK14986 548 QIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFI 627 (815)
T ss_pred eehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEEe
Confidence 9999999999999 77776554 32 2578999997542211 00
Q ss_pred --------HHHHHhcCeeEEcCC--cCcChHHHHHHccCCccc
Q 002628 852 --------YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 852 --------e~iyaaADIfVlPS~--~EpFGLV~LEAMg~gl~V 884 (899)
+.++.+|||...-|. .|++|..-|-||-=|...
T Consensus 628 enY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLt 670 (815)
T PRK14986 628 PNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALT 670 (815)
T ss_pred CCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCcee
Confidence 189999999999997 799999999998444333
No 106
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=98.04 E-value=3.4e-05 Score=94.09 Aligned_cols=250 Identities=18% Similarity=0.142 Sum_probs=150.8
Q ss_pred CceEEEECCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCCCCC--CCChhhhhh---------cCCcccc
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQG--TAPAKELAS---------CGLDVQQ 699 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~-g--------L~giPiV~TIHn~~fqG--~~p~~~L~~---------~GL~~~~ 699 (899)
++.+||.++-|++++.|-+.+.+... + ....-+++|-|+....| .+|.+.+.. .+++...
T Consensus 297 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~f 376 (794)
T TIGR02093 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRF 376 (794)
T ss_pred cceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHH
Confidence 78999999999988766666543321 1 23457999999885333 233332211 1111111
Q ss_pred c--------------CCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccc-cccccccCCCcEEEEecCccCC
Q 002628 700 L--------------NRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQG-LHSTLNFHSKKFVGILNGIDTD 764 (899)
Q Consensus 700 l--------------~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~G-L~~iL~~~~~KI~VIpNGID~e 764 (899)
+ .++.-+. ......+++-..|+..|..|..||.-+.+-.... +.......+.++.-+.|||...
T Consensus 377 l~~~~~~~p~d~~~~~~~sii~-~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~df~~l~P~kf~n~TNGVt~r 455 (794)
T TIGR02093 377 LAELAAKGPGDEAKIRRMSIIE-EGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELYPEKFNNKTNGITPR 455 (794)
T ss_pred HHHHHHhCCCcHHHHhheeeee-cCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccCCcCCCCCcc
Confidence 0 0000011 0012257788888999999999998777641000 0011113468889999999998
Q ss_pred CCCCCcchhhhhhcc--------------------ccc-------ccchhhhHHHH----HHHcCCCCCCCCCcEEEEEe
Q 002628 765 AWNPATDTFLKVQYN--------------------AND-------LQGKAENKESI----RKHLGLSSADARKPLVGCIT 813 (899)
Q Consensus 765 ~f~P~~d~~L~~~ys--------------------add-------l~GK~~~K~aL----Rk~LGLs~~d~~kpLVgfVG 813 (899)
.|--...+.+..-++ ++| .+-|..+|..| +++.|+. .+++....+++-
T Consensus 456 rWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~-ldp~slfdvq~K 534 (794)
T TIGR02093 456 RWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVE-VDPNSIFDVQVK 534 (794)
T ss_pred chhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cCccccchhhhe
Confidence 885221122211111 011 11244555544 5567876 467888899999
Q ss_pred cCCCccCHHH-HHHHHHHh---hcc------CcEEEEEcCCCccCcc-H-------------------------------
Q 002628 814 RLVPQKGVHL-IRHAIYRT---LEL------GGQFILLGSSPVPHIQ-V------------------------------- 851 (899)
Q Consensus 814 RL~~qKGvdl-LIeAi~~L---le~------dvqLVIVG~Gp~~~Lq-k------------------------------- 851 (899)
|++.+|...+ +++.+.+. .+. +.+++++|...+.+.. +
T Consensus 535 R~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFlenY 614 (794)
T TIGR02093 535 RLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFVPNY 614 (794)
T ss_pred echhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEeCCC
Confidence 9999999999 77766554 322 5689999975432110 0
Q ss_pred -----HHHHHhcCeeEEcCC--cCcChHHHHHHccCCcccccCCCcc
Q 002628 852 -----YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVNNNCEPW 891 (899)
Q Consensus 852 -----e~iyaaADIfVlPS~--~EpFGLV~LEAMg~gl~Vidgv~~~ 891 (899)
+.++.+||+...-|. .|++|..-|-+|-=|...+..-.||
T Consensus 615 ~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGa 661 (794)
T TIGR02093 615 NVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGA 661 (794)
T ss_pred ChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccch
Confidence 189999999999997 7999999999995554444444444
No 107
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.97 E-value=0.00015 Score=84.94 Aligned_cols=224 Identities=17% Similarity=0.191 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCC
Q 002628 623 FSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNR 702 (899)
Q Consensus 623 ~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~ 702 (899)
|.-.++..++.+...-..-|+|-+||+|-.++ |.+++.. ..+.|+.+.+|-. +|...+..| +|.
T Consensus 124 Y~~vN~~FA~~i~~~~~~~D~VWVhDYhL~ll-P~~LR~~----~~~~~IgfFlHiP-----FPs~e~fr~-lP~----- 187 (474)
T PF00982_consen 124 YKRVNRRFADAIAEVYRPGDLVWVHDYHLMLL-PQMLRER----GPDARIGFFLHIP-----FPSSEIFRC-LPW----- 187 (474)
T ss_dssp HHHHHHHHHHHHGGG--TT-EEEEESGGGTTH-HHHHHHT----T--SEEEEEE-S---------HHHHTT-STT-----
T ss_pred HHHHHHHHHHHHHHhCcCCCEEEEeCCcHHHH-HHHHHhh----cCCceEeeEEecC-----CCCHHHHhh-CCc-----
Confidence 33334444444443334679999999999998 5666542 3578999999964 233222111 110
Q ss_pred cccccccccccchhhhhHHhhhccEEEEeChhhHHhh-c-----ccccc-----ccc--cCCCcEEEEecCccCCCCCCC
Q 002628 703 PDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-G-----QGLHS-----TLN--FHSKKFVGILNGIDTDAWNPA 769 (899)
Q Consensus 703 pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g-----~GL~~-----iL~--~~~~KI~VIpNGID~e~f~P~ 769 (899)
..-+-.++..||.|-.-+..|++.+ . .|+.. .+. .+.-++.+.|=|||++.|...
T Consensus 188 ------------r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~ 255 (474)
T PF00982_consen 188 ------------REEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQL 255 (474)
T ss_dssp ------------HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHH
T ss_pred ------------HHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhh
Confidence 0112345778999999998888861 0 01110 111 123446667778887654211
Q ss_pred cchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEEcC
Q 002628 770 TDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGS 843 (899)
Q Consensus 770 ~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIVG~ 843 (899)
.-++ .. ......+++.++- +..+|+-|.|+.+-||+..=+.|+.++++. .+.|+-++.
T Consensus 256 -------~~~~-~v---~~~~~~l~~~~~~-----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~ 319 (474)
T PF00982_consen 256 -------ARSP-EV---QERAEELREKFKG-----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAV 319 (474)
T ss_dssp -------HH-S-------HHHHHHHHHTTT------SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--
T ss_pred -------ccCh-HH---HHHHHHHHHhcCC-----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEee
Confidence 0000 00 1123457777651 247889999999999999999999998752 567776665
Q ss_pred CCccC------ccHH---------------------------------HHHHhcCeeEEcCCcCcChHHHHHHcc-----
Q 002628 844 SPVPH------IQVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQG----- 879 (899)
Q Consensus 844 Gp~~~------Lqke---------------------------------~iyaaADIfVlPS~~EpFGLV~LEAMg----- 879 (899)
..... +..+ .+|+.||+++++|..++.-||..|-.+
T Consensus 320 psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~ 399 (474)
T PF00982_consen 320 PSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDN 399 (474)
T ss_dssp B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS
T ss_pred ccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCC
Confidence 32211 1110 999999999999999999999999763
Q ss_pred CCcccccCCCc
Q 002628 880 GDLTVNNNCEP 890 (899)
Q Consensus 880 ~gl~Vidgv~~ 890 (899)
-|+-|+...+|
T Consensus 400 ~GvLiLSefaG 410 (474)
T PF00982_consen 400 PGVLILSEFAG 410 (474)
T ss_dssp --EEEEETTBG
T ss_pred CCceEeeccCC
Confidence 34555444444
No 108
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.91 E-value=0.00018 Score=83.57 Aligned_cols=241 Identities=18% Similarity=0.192 Sum_probs=108.7
Q ss_pred hhhhhhhhhhhHHhhhhccCCCCCCCCeEEEEcCccC-------CcccCCcHHHHHHHHHHHHHHC--------CCe---
Q 002628 486 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA-------PVAKVGGLGDVVAGLGKALQKK--------GHL--- 547 (899)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~MKILhIs~E~~-------P~akvGGLg~vV~~LArALqk~--------GHe--- 547 (899)
.++-+..|+..|..|++.-.. -.+|++++++-+ ....+||.-.||.++++||.+. |.+
T Consensus 251 ~dll~aPdp~~LE~Fl~RiPm----vf~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p 326 (550)
T PF00862_consen 251 SDLLEAPDPSTLEKFLSRIPM----VFNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITP 326 (550)
T ss_dssp HHHHHS--HHHHHHHHHHS-------SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----
T ss_pred HHHHhCCCchHHHHHhhhcce----eEEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCC
Confidence 456677777777777654322 258999987531 1124899999999999999763 443
Q ss_pred -EEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCC----CcccccCCCCCCCcchhh
Q 002628 548 -VEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHP----DKFFWRGQFYGEHDDFRR 622 (899)
Q Consensus 548 -VtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p----~~~F~r~~iYg~~Dd~~R 622 (899)
|.|+|.--+..... ..+-+++.+ .|. ++..+.+++-... .+|.++..+|++ ..+
T Consensus 327 ~i~i~TRlIpd~~~t------~~~q~le~~-~gt-----------~~a~IlRvPF~~~~gi~~kwisrf~lWPy---Le~ 385 (550)
T PF00862_consen 327 KIDIVTRLIPDAKGT------TCNQRLEKV-SGT-----------ENARILRVPFGPEKGILRKWISRFDLWPY---LEE 385 (550)
T ss_dssp EEEEEEE--TBTTCG------GGTSSEEEE-TTE-----------SSEEEEEE-ESESTEEE-S---GGG-GGG---HHH
T ss_pred ceeeecccccCCcCC------Ccccccccc-CCC-----------CCcEEEEecCCCCcchhhhccchhhchhh---HHH
Confidence 66776432221100 000001111 111 2222333320000 013333334433 122
Q ss_pred HHHHHHHHH-HHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccC
Q 002628 623 FSFFSRAAL-ELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLN 701 (899)
Q Consensus 623 ~s~FsrAal-elLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~ 701 (899)
|+..+. ++....+..||+||.|...++++|.++... .++|.++|-|.++- .++...++.+..+.
T Consensus 386 ---fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~------lgv~~~~iaHsLek------~Ky~~s~~~w~e~e 450 (550)
T PF00862_consen 386 ---FADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRK------LGVTQCFIAHSLEK------TKYEDSDLYWKEIE 450 (550)
T ss_dssp ---HHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHH------HT-EEEEE-SS-HH------HHHHTTTTTSHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhh------cCCceehhhhcccc------ccccccCCCHHHHH
Confidence 333333 333445779999999988889987776654 48999999998741 11111122111100
Q ss_pred CcccccccccccchhhhhHHhhhccEEEEeChhhHHh----h-cc---------ccccccc---cCCCcEEEEecCccCC
Q 002628 702 RPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE----G-GQ---------GLHSTLN---FHSKKFVGILNGIDTD 764 (899)
Q Consensus 702 ~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e----~-g~---------GL~~iL~---~~~~KI~VIpNGID~e 764 (899)
..+.+..++.....++.+||.|||-+..-... + ++ ||..+.. ....|+.+||.|+|.+
T Consensus 451 -----~~Yhfs~qftAd~iamn~adfIItST~QEI~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vFdPkfNiv~PGad~~ 525 (550)
T PF00862_consen 451 -----EKYHFSCQFTADLIAMNAADFIITSTYQEIAGQKDTVGQYESHKAFTLPGLYRVVNGIDVFDPKFNIVSPGADES 525 (550)
T ss_dssp -----HHH-HHHHHHHHHHHHHHSSEEEESSHHHHHB-SSSBHTTGGGSSEEETTTEEEEES--TT-TTEEE------TT
T ss_pred -----hhccchhhhhHHHHHhhcCCEEEEcchHhhcCCccccCCccchhhcchHhHHhhhccccccCCcccccCCCCCcc
Confidence 00113334555677899999998876432221 1 11 2222111 2346788888888888
Q ss_pred CCCCCcc
Q 002628 765 AWNPATD 771 (899)
Q Consensus 765 ~f~P~~d 771 (899)
.|-|.++
T Consensus 526 iyFpyt~ 532 (550)
T PF00862_consen 526 IYFPYTE 532 (550)
T ss_dssp TS--TT-
T ss_pred eecCCcc
Confidence 8877543
No 109
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.89 E-value=0.0002 Score=83.70 Aligned_cols=196 Identities=15% Similarity=0.026 Sum_probs=123.0
Q ss_pred CceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhh
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLK 719 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK 719 (899)
.-|+|-+||+|-.++ |.+++.. ....++-|.+|-. +|...+.. -+|. + .-+-
T Consensus 123 ~~D~VWVHDYhL~ll-p~~LR~~----~~~~~IgFFlHiP-----FPs~eifr-~LP~----------------r-~eil 174 (474)
T PRK10117 123 DDDIIWIHDYHLLPF-ASELRKR----GVNNRIGFFLHIP-----FPTPEIFN-ALPP----------------H-DELL 174 (474)
T ss_pred CCCEEEEeccHhhHH-HHHHHHh----CCCCcEEEEEeCC-----CCChHHHh-hCCC----------------h-HHHH
Confidence 459999999999888 5565542 2467899999964 23222211 1111 0 1123
Q ss_pred HHhhhccEEEEeChhhHHhh-c-----ccccc----cc--ccCCCcEEEEecCccCCCCCCCcchhhhhhcccccccchh
Q 002628 720 GAIVFSNIVTTVSPSYAQEG-G-----QGLHS----TL--NFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKA 787 (899)
Q Consensus 720 ~ai~~AD~VItVS~sya~e~-g-----~GL~~----iL--~~~~~KI~VIpNGID~e~f~P~~d~~L~~~ysaddl~GK~ 787 (899)
.++..+|.|-.=++.|++.+ . .|+.. .. ..+.-++.+.|=|||++.|.-... ++ ..
T Consensus 175 ~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~-------~~-----~~ 242 (474)
T PRK10117 175 EQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAA-------GP-----LP 242 (474)
T ss_pred HHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhh-------ch-----HH
Confidence 45667788877777777651 0 01110 00 112345677788999876532110 00 01
Q ss_pred hhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEEcCCCcc---Cc---cHH---
Q 002628 788 ENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGSSPVP---HI---QVY--- 852 (899)
Q Consensus 788 ~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIVG~Gp~~---~L---qke--- 852 (899)
.....+++.++ ++.+|+-|.|+.+-||+..=+.|+.++++. .+.|+-+....-. .+ +.+
T Consensus 243 ~~~~~lr~~~~------~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~ 316 (474)
T PRK10117 243 PKLAQLKAELK------NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLET 316 (474)
T ss_pred HHHHHHHHHcC------CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHH
Confidence 11345666664 456888899999999999999999998862 4666656543211 11 110
Q ss_pred ------------------------------HHHHhcCeeEEcCCcCcChHHHHHHccCC
Q 002628 853 ------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGGD 881 (899)
Q Consensus 853 ------------------------------~iyaaADIfVlPS~~EpFGLV~LEAMg~g 881 (899)
.+|+.||+++++|..+++-||..|-.+|-
T Consensus 317 ~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q 375 (474)
T PRK10117 317 EAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQ 375 (474)
T ss_pred HHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeee
Confidence 89999999999999999999999987653
No 110
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.00042 Score=81.03 Aligned_cols=214 Identities=21% Similarity=0.237 Sum_probs=132.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccc
Q 002628 620 FRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (899)
Q Consensus 620 ~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~ 699 (899)
+..|.-.++...+-+...-..=|+|-+||+|-.++ |.+++.. ....++.|++|-. +|...+..| +|.
T Consensus 127 w~~Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~-P~mlR~~----~~~~~IgfFlHiP-----fPssEvfr~-lP~-- 193 (486)
T COG0380 127 WDAYVKVNRKFADKIVEIYEPGDIIWVHDYHLLLV-PQMLRER----IPDAKIGFFLHIP-----FPSSEVFRC-LPW-- 193 (486)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEEechhhhh-HHHHHHh----CCCceEEEEEeCC-----CCCHHHHhh-Cch--
Confidence 33443344444444444323449999999999998 6676642 3567899999964 233333222 111
Q ss_pred cCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhh--------c-cccc-cccc---cCCCcEEEEecCccCCCC
Q 002628 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG--------G-QGLH-STLN---FHSKKFVGILNGIDTDAW 766 (899)
Q Consensus 700 l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~--------g-~GL~-~iL~---~~~~KI~VIpNGID~e~f 766 (899)
.. -+-.++..||.|-.=++.|++.+ + .|.. .... ....++..+|=|||+..|
T Consensus 194 ------------r~---eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~ 258 (486)
T COG0380 194 ------------RE---EILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEF 258 (486)
T ss_pred ------------HH---HHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHH
Confidence 01 11345667888888888887761 0 0000 0111 123566777889988655
Q ss_pred CCCcchhhhhhcccccccchh--hhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEE
Q 002628 767 NPATDTFLKVQYNANDLQGKA--ENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQF 838 (899)
Q Consensus 767 ~P~~d~~L~~~ysaddl~GK~--~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqL 838 (899)
.-.. .++. .....+++.++- ++.+|+.+.|+.+-||+..=+.|+.+++.. .+.+
T Consensus 259 ~~~~-------------~~~~v~~~~~el~~~~~~-----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvl 320 (486)
T COG0380 259 ERAL-------------KSPSVQEKVLELKAELGR-----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVL 320 (486)
T ss_pred HHhh-------------cCCchhhHHHHHHHHhcC-----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEE
Confidence 3211 0111 123445566542 368899999999999999999999999852 4556
Q ss_pred EEEcCCCccC---cc---HH---------------------------------HHHHhcCeeEEcCCcCcChHHHHHHcc
Q 002628 839 ILLGSSPVPH---IQ---VY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQG 879 (899)
Q Consensus 839 VIVG~Gp~~~---Lq---ke---------------------------------~iyaaADIfVlPS~~EpFGLV~LEAMg 879 (899)
+-++.+.... ++ .+ .+|+.||+++++|..++.-+|..|--+
T Consensus 321 iQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa 400 (486)
T COG0380 321 LQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVA 400 (486)
T ss_pred EEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHH
Confidence 6666544321 11 00 899999999999999999999999653
No 111
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.82 E-value=0.00026 Score=86.45 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=148.8
Q ss_pred CceEEEECCCchhhHHHHHHHhhccC-C--------CCCCeEEEEecCCCCCCC--CChhhhhhc-C--------C----
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPK-G--------LNSARVCFTCHNFEYQGT--APAKELASC-G--------L---- 695 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~~-g--------L~giPiV~TIHn~~fqG~--~p~~~L~~~-G--------L---- 695 (899)
+|.+||.++-|++++.|-+.+.+... + .....+++|.|+.-..|. +|.+.+..+ + +
T Consensus 302 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~f 381 (798)
T PRK14985 302 DYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTRF 381 (798)
T ss_pred CCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 78899999999988766665543321 1 135579999998854332 333322110 0 0
Q ss_pred ----------cccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccc-cccccccCCCcEEEEecCccCC
Q 002628 696 ----------DVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQG-LHSTLNFHSKKFVGILNGIDTD 764 (899)
Q Consensus 696 ----------~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~G-L~~iL~~~~~KI~VIpNGID~e 764 (899)
+...+.++.-+. .+.+++-..|+..|..|..||.-+.+-.... +.......+.++.-|.|||...
T Consensus 382 l~~~~~~~~~d~~~~~~~sii~----~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~df~~l~p~kf~nvTNGVt~r 457 (798)
T PRK14985 382 KTLVEKTWPGDKKVWAKLAVVH----DKQVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPR 457 (798)
T ss_pred HHHHHHhCCCcHHHhhhhhhcc----CCeeehHHHHHHhcchhHhhHHHHhchhHHhhhhhhHhhCCCccCCcCCCcCcc
Confidence 000000000011 1356777788888888999998766520000 0011112478889999999999
Q ss_pred CC----CCCcchhhhhh-----------------cccc-c-----ccchhhhHHHH----HHHcCCCCCCCCCcEEEEEe
Q 002628 765 AW----NPATDTFLKVQ-----------------YNAN-D-----LQGKAENKESI----RKHLGLSSADARKPLVGCIT 813 (899)
Q Consensus 765 ~f----~P~~d~~L~~~-----------------ysad-d-----l~GK~~~K~aL----Rk~LGLs~~d~~kpLVgfVG 813 (899)
.| +|.-...+... +..| . .+-|..+|..| +++.|+. .+++...++++-
T Consensus 458 rWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~-ldp~slfdvq~k 536 (798)
T PRK14985 458 RWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIE-INPQAIFDVQIK 536 (798)
T ss_pred hhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cCchhcchhhHh
Confidence 99 44322222211 1111 1 11244455443 5666876 467888899999
Q ss_pred cCCCccCHHH-HHHHHHHhh---c------cCcEEEEEcCCCccCc-cH-------------------------------
Q 002628 814 RLVPQKGVHL-IRHAIYRTL---E------LGGQFILLGSSPVPHI-QV------------------------------- 851 (899)
Q Consensus 814 RL~~qKGvdl-LIeAi~~Ll---e------~dvqLVIVG~Gp~~~L-qk------------------------------- 851 (899)
|++.+|...+ ++..+.++. + .+.++|++|...+.+. .+
T Consensus 537 R~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlenY 616 (798)
T PRK14985 537 RLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPDY 616 (798)
T ss_pred hhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCCC
Confidence 9999999999 777765543 2 2478999997542211 00
Q ss_pred -----HHHHHhcCeeEEcCC--cCcChHHHHHHccCCcccccCCCcc
Q 002628 852 -----YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVNNNCEPW 891 (899)
Q Consensus 852 -----e~iyaaADIfVlPS~--~EpFGLV~LEAMg~gl~Vidgv~~~ 891 (899)
+.++.+|||...-|. .|++|..-|-+|-=|...+..-.||
T Consensus 617 ~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGa 663 (798)
T PRK14985 617 CVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGA 663 (798)
T ss_pred ChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccch
Confidence 189999999999997 7999999999985554444333343
No 112
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.74 E-value=0.0004 Score=86.60 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhhhcCCcccccCCcc
Q 002628 625 FFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPD 704 (899)
Q Consensus 625 ~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pd 704 (899)
.|+.++.+.+. ..-|+|-+||+|-.++ |.+++.. ....++-|.+|-. +|...+..+ +|.
T Consensus 189 ~FA~~v~~~~~---~~~d~VWVhDYhL~ll-P~~LR~~----~~~~~IgfFlHiP-----FPs~eifr~-LP~------- 247 (854)
T PLN02205 189 IFADRIMEVIN---PEDDFVWIHDYHLMVL-PTFLRKR----FNRVKLGFFLHSP-----FPSSEIYKT-LPI------- 247 (854)
T ss_pred HHHHHHHHHhC---CCCCEEEEeCchhhHH-HHHHHhh----CCCCcEEEEecCC-----CCChHHHhh-CCc-------
Confidence 45555555432 1128999999999888 5666542 4578999999964 233222111 110
Q ss_pred cccccccccchhhhhHHhhhccEEEEeChhhHHhh-c-----cccccc-----cc----cCCCcEEEEecCccCCCCCCC
Q 002628 705 RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-G-----QGLHST-----LN----FHSKKFVGILNGIDTDAWNPA 769 (899)
Q Consensus 705 rL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g-----~GL~~i-----L~----~~~~KI~VIpNGID~e~f~P~ 769 (899)
..-+-.++..||.|-.-+..|++.+ . .|+... .. .+.-++.+.|=|||.+.|.-.
T Consensus 248 ----------r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~ 317 (854)
T PLN02205 248 ----------REELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSV 317 (854)
T ss_pred ----------HHHHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHH
Confidence 1112346777898888888888761 0 012110 00 123456677788887655321
Q ss_pred cchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEEcC
Q 002628 770 TDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGS 843 (899)
Q Consensus 770 ~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIVG~ 843 (899)
.. ++ . .......++++++- +++.+|+-|.|+.+-||+..=+.|+.++++. .+.|+-+..
T Consensus 318 ~~-------~~-~---~~~~~~~l~~~~~~----~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~ 382 (854)
T PLN02205 318 LS-------LP-E---TEAKVKELIKQFCD----QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIAN 382 (854)
T ss_pred hc-------Ch-h---HHHHHHHHHHHhcc----CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEec
Confidence 00 00 0 01123457777752 2567888999999999999999999998762 355555543
Q ss_pred CCc---cC---ccHH---------------------------------HHHHhcCeeEEcCCcCcChHHHHHHccC
Q 002628 844 SPV---PH---IQVY---------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGG 880 (899)
Q Consensus 844 Gp~---~~---Lqke---------------------------------~iyaaADIfVlPS~~EpFGLV~LEAMg~ 880 (899)
... ++ ++.+ .+|+.||+++++|..+++-||..|-.+|
T Consensus 383 psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~ 458 (854)
T PLN02205 383 PARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIIS 458 (854)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEE
Confidence 221 11 1110 8999999999999999999999997654
No 113
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.0043 Score=70.54 Aligned_cols=247 Identities=15% Similarity=0.021 Sum_probs=123.9
Q ss_pred cCCcHHHHHHHHHHHHHHCCCe-EEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeeeCCeeEEEeCCCCC
Q 002628 526 KVGGLGDVVAGLGKALQKKGHL-VEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHP 604 (899)
Q Consensus 526 kvGGLg~vV~~LArALqk~GHe-VtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~veGV~V~~L~~~~p 604 (899)
.+||-=.....++++|.++|++ |.++...++. . .. - ....+++++.|+..
T Consensus 9 GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~-e--------~~--------l----------~~~~~~~~~~I~~~-- 59 (357)
T COG0707 9 GTGGHVFPALALAEELAKRGWEQVIVLGTGDGL-E--------AF--------L----------VKQYGIEFELIPSG-- 59 (357)
T ss_pred CCccchhHHHHHHHHHHhhCccEEEEecccccc-e--------ee--------e----------ccccCceEEEEecc--
Confidence 4677777778899999999996 5444222221 0 00 0 01135666666532
Q ss_pred CcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCC
Q 002628 605 DKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGT 684 (899)
Q Consensus 605 ~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~ 684 (899)
.+.+...+....+..++......+...++ ..+||+|-+-+++... ++.+... +.++|+++...|... |
T Consensus 60 --~~~~~~~~~~~~~~~~~~~~~~~a~~il~--~~kPd~vig~Ggyvs~-P~~~Aa~-----~~~iPv~ihEqn~~~-G- 127 (357)
T COG0707 60 --GLRRKGSLKLLKAPFKLLKGVLQARKILK--KLKPDVVIGTGGYVSG-PVGIAAK-----LLGIPVIIHEQNAVP-G- 127 (357)
T ss_pred --cccccCcHHHHHHHHHHHHHHHHHHHHHH--HcCCCEEEecCCcccc-HHHHHHH-----hCCCCEEEEecCCCc-c-
Confidence 22222222111112222222333344555 4699999985544433 2344333 367999998887531 1
Q ss_pred CChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCC
Q 002628 685 APAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTD 764 (899)
Q Consensus 685 ~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e 764 (899)
+-. +...++|+.|-+--+. ... ..+..++.+.-|.|+.+
T Consensus 128 ----------~an---------------------k~~~~~a~~V~~~f~~-~~~---------~~~~~~~~~tG~Pvr~~ 166 (357)
T COG0707 128 ----------LAN---------------------KILSKFAKKVASAFPK-LEA---------GVKPENVVVTGIPVRPE 166 (357)
T ss_pred ----------hhH---------------------HHhHHhhceeeecccc-ccc---------cCCCCceEEecCcccHH
Confidence 100 2223445544432221 111 12345666776777654
Q ss_pred CCC-CCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEe-cCCCccCHHHHHHHHHHhhccCcEEEE-E
Q 002628 765 AWN-PATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCIT-RLVPQKGVHLIRHAIYRTLELGGQFIL-L 841 (899)
Q Consensus 765 ~f~-P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVG-RL~~qKGvdlLIeAi~~Lle~dvqLVI-V 841 (899)
... |. ...+.... .++++|+++| ....++=-+.+.++...+.+ +++++. .
T Consensus 167 ~~~~~~---------------------~~~~~~~~-----~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~ 219 (357)
T COG0707 167 FEELPA---------------------AEVRKDGR-----LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQT 219 (357)
T ss_pred hhccch---------------------hhhhhhcc-----CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEc
Confidence 432 11 11111111 1456665555 44444322222333333332 566655 4
Q ss_pred cCCCccC----cc-----------H--HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccc
Q 002628 842 GSSPVPH----IQ-----------V--YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 885 (899)
Q Consensus 842 G~Gp~~~----Lq-----------k--e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vi 885 (899)
|.+.... +. . ..+|++||++|+=+ =++|+-|+.++|+|++
T Consensus 220 G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRa----Ga~Ti~E~~a~g~P~I 276 (357)
T COG0707 220 GKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRA----GALTIAELLALGVPAI 276 (357)
T ss_pred CcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCC----cccHHHHHHHhCCCEE
Confidence 6554221 10 0 19999999999765 3689999999987763
No 114
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.60 E-value=0.00044 Score=83.80 Aligned_cols=240 Identities=20% Similarity=0.206 Sum_probs=124.8
Q ss_pred CceEEEECCCchhhHHHHHHHhhcc-CCC--------CCCeEEEEecCCCCCCC--CChhhhhh----------------
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVP-KGL--------NSARVCFTCHNFEYQGT--APAKELAS---------------- 692 (899)
Q Consensus 640 kPDIIH~Hdw~talVapl~~~~ya~-~gL--------~giPiV~TIHn~~fqG~--~p~~~L~~---------------- 692 (899)
++-+||.++-|++++.|-..+.+.. .++ ...-+++|.|+.-..|. +|.+.+..
T Consensus 214 ~~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f 293 (713)
T PF00343_consen 214 DKVVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRF 293 (713)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHH
T ss_pred cceEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHH
Confidence 3459999999998876766665443 122 24468999998854442 33322211
Q ss_pred -------cCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHhh-ccccccccccCCCcEEEEecCccCC
Q 002628 693 -------CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG-GQGLHSTLNFHSKKFVGILNGIDTD 764 (899)
Q Consensus 693 -------~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e~-g~GL~~iL~~~~~KI~VIpNGID~e 764 (899)
.+.+...+.++.-+ +......+++-..|++.|..|..||.-+.+-. ..-+.......+.|+.-|.|||...
T Consensus 294 ~~~~~~~~~~d~~~~~~l~ii-~~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~r 372 (713)
T PF00343_consen 294 LDELRRKYPGDEDQIRRLSII-EEGNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPR 372 (713)
T ss_dssp HHHHHHHSTT-HHHHHHHSSE-ETSSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TC
T ss_pred HHHHHHHhcCcchhhhhcccc-cccchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCc
Confidence 01111100000000 11123467888889999999999999877641 0001111123467899999999999
Q ss_pred CCCCCcch----hhhh----hcc--ccccc-----------------chhhhHHH----HHHHcCCCCCCCCCcEEEEEe
Q 002628 765 AWNPATDT----FLKV----QYN--ANDLQ-----------------GKAENKES----IRKHLGLSSADARKPLVGCIT 813 (899)
Q Consensus 765 ~f~P~~d~----~L~~----~ys--addl~-----------------GK~~~K~a----LRk~LGLs~~d~~kpLVgfVG 813 (899)
.|--...+ .+.. .|. ++.+. -|..+|.. +++..|+. .+++....+++-
T Consensus 373 rWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~-ldp~slfdv~~r 451 (713)
T PF00343_consen 373 RWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVE-LDPDSLFDVQAR 451 (713)
T ss_dssp CCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS----TTSEEEEEES
T ss_pred ccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcchhhhhhhh
Confidence 99432111 1111 111 11010 12233332 34455765 356777889999
Q ss_pred cCCCccCHHH-HHHHH---HHhhc------cCcEEEEEcCCCccC-----c-c---------------------------
Q 002628 814 RLVPQKGVHL-IRHAI---YRTLE------LGGQFILLGSSPVPH-----I-Q--------------------------- 850 (899)
Q Consensus 814 RL~~qKGvdl-LIeAi---~~Lle------~dvqLVIVG~Gp~~~-----L-q--------------------------- 850 (899)
|++.+|...+ +++.+ .++.. .++++|++|...+.+ + +
T Consensus 452 R~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenY 531 (713)
T PF00343_consen 452 RFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENY 531 (713)
T ss_dssp -SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-
T ss_pred hcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCC
Confidence 9999999998 34433 34443 268899999753221 0 0
Q ss_pred ----HHHHHHhcCeeEEcCC--cCcChHHHHHHccCC
Q 002628 851 ----VYPILLSSFSFLRKHI--FNICNLYIKLGQGGD 881 (899)
Q Consensus 851 ----ke~iyaaADIfVlPS~--~EpFGLV~LEAMg~g 881 (899)
.+.++.++||....|+ +|++|.+-|-||-=|
T Consensus 532 dvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NG 568 (713)
T PF00343_consen 532 DVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNG 568 (713)
T ss_dssp SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT
T ss_pred cHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCC
Confidence 0189999999999997 799999999998444
No 115
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=97.32 E-value=0.0005 Score=81.54 Aligned_cols=78 Identities=8% Similarity=-0.117 Sum_probs=64.5
Q ss_pred cEEEEEe--cCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCcc----Cc---------c-------------------
Q 002628 807 PLVGCIT--RLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP----HI---------Q------------------- 850 (899)
Q Consensus 807 pLVgfVG--RL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~----~L---------q------------------- 850 (899)
..+++++ || ++|-++.+|+|+..+.. .+++|.+.|.|... .+ +
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPI 398 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhc
Confidence 4577788 99 99999999999999865 48999999976521 00 1
Q ss_pred ----------H-----------H--HHHHhcCeeEEcCCcCcChHHHHHHccCCccccc
Q 002628 851 ----------V-----------Y--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 851 ----------k-----------e--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vid 886 (899)
. . ..|..+.++|.+|..|+|| +++||++.|+|+++
T Consensus 399 ~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqIn 456 (519)
T TIGR03713 399 LQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQIN 456 (519)
T ss_pred ccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCeee
Confidence 0 1 8899999999999999999 99999999998863
No 116
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.08 Score=69.60 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=71.7
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHH
Q 002628 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHE 212 (899)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (899)
++++-..+...+.++-.++. -...+..+.++..|.+.++.+|..|+..+..++.- ..++=++++++++..+
T Consensus 767 le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~--------~s~~ele~ei~~~~~e 837 (1311)
T TIGR00606 767 IEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD--------RTVQQVNQEKQEKQHE 837 (1311)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--------CCHHHHHHHHHHHHHH
Confidence 44444444444444444433 34445555666667777777777776666655431 1334455555555555
Q ss_pred hhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 002628 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS 292 (899)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (899)
+.. +..+++.+.++-..+++.|..|+.++.++.+....+..-.+.|..
T Consensus 838 l~~--------------------------------l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~ 885 (1311)
T TIGR00606 838 LDT--------------------------------VVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQ 885 (1311)
T ss_pred HHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 233444444444455555555555444444444433333345555
Q ss_pred HHhhHHHHHhhhhcchhhhhc
Q 002628 293 LESSLKELESKLSISQEDVAK 313 (899)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~ 313 (899)
|+..|.+|...+....+.+.+
T Consensus 886 le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555444433
No 117
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.24 E-value=0.11 Score=66.64 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=26.6
Q ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 002628 132 QLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (899)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (899)
++..+..-+...+..+--++.....+-..++.+-.+.+.+..++..++..+...
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~ 728 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556665555555554444444444444444444444444444444333
No 118
>PRK02224 chromosome segregation protein; Provisional
Probab=97.19 E-value=0.11 Score=65.21 Aligned_cols=119 Identities=19% Similarity=0.336 Sum_probs=60.7
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh------------------hhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD------------------ADERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
+-.+..+++.++++-..++.-+.+++..+..... ..+.+-.+......++..+.+||..+..
T Consensus 414 l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 493 (880)
T PRK02224 414 LEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655555555555555444431 1123334444455555555666655555
Q ss_pred chhhhhccccc---hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 002628 307 SQEDVAKLSTL---KVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (899)
Q Consensus 307 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (899)
.......+..+ +-+-..+.++++.++.+++....+.+.+ ......|++++.+|++.+
T Consensus 494 ~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~---~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEK---RERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence 55544443333 2333345566666666666544444433 233345555555555554
No 119
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.14 E-value=0.041 Score=66.75 Aligned_cols=193 Identities=28% Similarity=0.403 Sum_probs=112.6
Q ss_pred HhhhhhhHHHhhhhchhhhhhhhhhhhh----hHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc
Q 002628 170 ALQGEINALEMRLAETDARIRVAAQEKI----HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (899)
.|+++...+.-|..+....+..-..+|. +|.-||.+|.+|++.++.....+ .|.
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~-----------~pa----------- 76 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPE-----------PPA----------- 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcc-----------ccc-----------
Confidence 3455555555555555555544444443 46677778888888887653221 111
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 002628 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (899)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (899)
..++.-..|.+|=..|+..++.|..++......-+.+-.|-.| .+..|.+||.++..-++
T Consensus 77 -~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~E---qEerL~ELE~~le~~~e---------------- 136 (617)
T PF15070_consen 77 -GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQE---QEERLAELEEELERLQE---------------- 136 (617)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----------------
Confidence 2233334566666667777888888887766655655555433 35667777766654333
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH---Hhhhh---hhhhchHHH------HHHHHHHHHHHHHH
Q 002628 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES---LDEAN---IYKLSSEKM------QQYNELMQQKMKLL 393 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~ 393 (899)
..+....||+...+--.-|.-.+.||.+|..++..|+.. |-..| .+++.++.- .+|+ .|++++..+
T Consensus 137 -~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~-~l~~~l~~~ 214 (617)
T PF15070_consen 137 -QQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG-ELQEKLHNL 214 (617)
T ss_pred -HHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 223344455443333333445689999999999999984 44444 455555422 1122 467777777
Q ss_pred HHhhccchHHHHH
Q 002628 394 EERLQRSDEEIHS 406 (899)
Q Consensus 394 ~~~~~~~~~~~~~ 406 (899)
++++...+.++.+
T Consensus 215 ~e~le~K~qE~~~ 227 (617)
T PF15070_consen 215 KEKLELKSQEAQS 227 (617)
T ss_pred HHHHHhhhHHHHH
Confidence 7777777766665
No 120
>PRK02224 chromosome segregation protein; Provisional
Probab=97.12 E-value=0.12 Score=65.09 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHH--HHhhhhhhHHHhhhhchhhhhh
Q 002628 157 ALEDLHKILQEK--EALQGEINALEMRLAETDARIR 190 (899)
Q Consensus 157 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 190 (899)
-+++++.-|.++ ..++..++.++.++++...++.
T Consensus 188 ~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 188 SLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555 4556666666666666655555
No 121
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.07 E-value=0.1 Score=61.97 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=38.8
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 002628 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSIS 307 (899)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (899)
..+-.+++.+..+...++..++.++.++.++. +.++.+..++.+.+.+++.+..++.-....
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777777777777777777777776663 334445556666666666666666554433
No 122
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.04 E-value=0.085 Score=59.69 Aligned_cols=254 Identities=14% Similarity=0.099 Sum_probs=135.5
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCCCcccccccccccceeeeeccCCccccceeeeeee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~~~~~~v~~L~~l~v~v~syfdG~~~~~~V~~~~v 591 (899)
|||++=..+ +|. -.+...+.+.|.++||+|.|.+..|+... +|- ..
T Consensus 1 MkIwiDi~~-p~h------vhfFk~~I~eL~~~GheV~it~R~~~~~~-----~LL----------------------~~ 46 (335)
T PF04007_consen 1 MKIWIDITH-PAH------VHFFKNIIRELEKRGHEVLITARDKDETE-----ELL----------------------DL 46 (335)
T ss_pred CeEEEECCC-chH------HHHHHHHHHHHHhCCCEEEEEEeccchHH-----HHH----------------------HH
Confidence 788876553 333 45778899999999999999998876421 110 01
Q ss_pred CCeeEEEeCCCCCCcccccCCCCCCCcchhhHHHHHHHHHHHHHHhCCCceEEEECCCchhh-HHHHHHHhhccCCCCCC
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAF-VAPLYWDLYVPKGLNSA 670 (899)
Q Consensus 592 eGV~V~~L~~~~p~~~F~r~~iYg~~Dd~~R~s~FsrAalelLrq~~~kPDIIH~Hdw~tal-Vapl~~~~ya~~gL~gi 670 (899)
.|++...+... . ...++. ...........+++++ .++|||+-++....+. ++ + ..|+
T Consensus 47 yg~~y~~iG~~-----g--~~~~~K---l~~~~~R~~~l~~~~~--~~~pDv~is~~s~~a~~va--~--------~lgi 104 (335)
T PF04007_consen 47 YGIDYIVIGKH-----G--DSLYGK---LLESIERQYKLLKLIK--KFKPDVAISFGSPEAARVA--F--------GLGI 104 (335)
T ss_pred cCCCeEEEcCC-----C--CCHHHH---HHHHHHHHHHHHHHHH--hhCCCEEEecCcHHHHHHH--H--------HhCC
Confidence 35555555421 0 111110 0111111222233333 4689999987543322 21 1 2478
Q ss_pred eEEEEecCCCCCCCCChhhhhhcCCcccccCCcccccccccccchhhhhHHhhhccEEEEeChhhHHh-hcccccccccc
Q 002628 671 RVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE-GGQGLHSTLNF 749 (899)
Q Consensus 671 PiV~TIHn~~fqG~~p~~~L~~~GL~~~~l~~pdrL~d~~~~~~in~lK~ai~~AD~VItVS~sya~e-~g~GL~~iL~~ 749 (899)
|.|.-..+.. .. .. . +..+-.||.+++++-.-... ..+|
T Consensus 105 P~I~f~D~e~-a~--~~----------------~--------------~Lt~Pla~~i~~P~~~~~~~~~~~G------- 144 (335)
T PF04007_consen 105 PSIVFNDTEH-AI--AQ----------------N--------------RLTLPLADVIITPEAIPKEFLKRFG------- 144 (335)
T ss_pred CeEEEecCch-hh--cc----------------c--------------eeehhcCCeeECCcccCHHHHHhcC-------
Confidence 9988777531 00 00 0 11234578888776421111 0111
Q ss_pred CCCcEEEE-ecCccCCCCCCCcchhhhhhcccccccchhhhHHHHHHHcCCCCCCCCCcEEEEEecCCCccC------HH
Q 002628 750 HSKKFVGI-LNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKG------VH 822 (899)
Q Consensus 750 ~~~KI~VI-pNGID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk~LGLs~~d~~kpLVgfVGRL~~qKG------vd 822 (899)
.+-++. +||++.-.|-.. |.+ ...+.+++|+. +.+.|+ =|..+.+. -.
T Consensus 145 --~~~~i~~y~G~~E~ayl~~--------F~P---------d~~vl~~lg~~----~~~yIv--vR~~~~~A~y~~~~~~ 199 (335)
T PF04007_consen 145 --AKNQIRTYNGYKELAYLHP--------FKP---------DPEVLKELGLD----DEPYIV--VRPEAWKASYDNGKKS 199 (335)
T ss_pred --CcCCEEEECCeeeEEeecC--------CCC---------ChhHHHHcCCC----CCCEEE--EEeccccCeeecCccc
Confidence 112244 888886554210 222 13467789965 235543 26555433 12
Q ss_pred HHHHHHHHhhccCcEEEEEcCCC-ccCccH-------------HHHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCC
Q 002628 823 LIRHAIYRTLELGGQFILLGSSP-VPHIQV-------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 823 lLIeAi~~Lle~dvqLVIVG~Gp-~~~Lqk-------------e~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv 888 (899)
.+-+.+..+.+.+-.+|++-... .+.+.+ ..++.-||++|--+ |....||...|+|++.--
T Consensus 200 i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig~g-----gTMa~EAA~LGtPaIs~~ 274 (335)
T PF04007_consen 200 ILPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYYADLVIGGG-----GTMAREAALLGTPAISCF 274 (335)
T ss_pred hHHHHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHHHhcCEEEeCC-----cHHHHHHHHhCCCEEEec
Confidence 34455666655554455554332 221111 17888889888654 778899999999998765
Q ss_pred Ccc
Q 002628 889 EPW 891 (899)
Q Consensus 889 ~~~ 891 (899)
.|.
T Consensus 275 ~g~ 277 (335)
T PF04007_consen 275 PGK 277 (335)
T ss_pred CCc
Confidence 554
No 123
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.99 E-value=0.16 Score=65.13 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhcc
Q 002628 386 MQQKMKLLEERLQR 399 (899)
Q Consensus 386 ~~~~~~~~~~~~~~ 399 (899)
++.++..++.++..
T Consensus 956 l~~~l~~l~~~i~~ 969 (1164)
T TIGR02169 956 VQAELQRVEEEIRA 969 (1164)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 124
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.95 E-value=0.25 Score=63.14 Aligned_cols=16 Identities=31% Similarity=0.723 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 002628 353 QELRKKVDKLEESLDE 368 (899)
Q Consensus 353 ~~~~~~~~~~~~~~~~ 368 (899)
.+|+.+++.|...+++
T Consensus 968 ~~l~~~i~~lg~aiee 983 (1179)
T TIGR02168 968 EEARRRLKRLENKIKE 983 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555554444
No 125
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.94 E-value=0.35 Score=61.80 Aligned_cols=57 Identities=25% Similarity=0.242 Sum_probs=33.7
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhh
Q 002628 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDA 187 (899)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (899)
..+.++-.=+.+.++.+.-+++....+-+.+.++-.+.+.++.++..++..+.....
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 726 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666555555555666666666666666666665555433
No 126
>PRK03918 chromosome segregation protein; Provisional
Probab=96.88 E-value=0.3 Score=61.27 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhccCcEEEEEcC
Q 002628 821 VHLIRHAIYRTLELGGQFILLGS 843 (899)
Q Consensus 821 vdlLIeAi~~Lle~dvqLVIVG~ 843 (899)
...+++++..+...+.+++++-.
T Consensus 830 ~~~l~~~l~~~~~~~~~iiiith 852 (880)
T PRK03918 830 RRKLVDIMERYLRKIPQVIIVSH 852 (880)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEC
Confidence 33444444443333334444443
No 127
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.09 Score=65.38 Aligned_cols=244 Identities=25% Similarity=0.298 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcc
Q 002628 156 QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN 235 (899)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (899)
.+|+++..+-.|.++.|.+++.+|..|+.+ -+.+.|++ .+..||+-..++|+.-.-.
T Consensus 674 ~~l~~l~~~~~~~~~~q~el~~le~eL~~l-----e~~~~kf~--~l~~ql~l~~~~l~l~~~r---------------- 730 (1174)
T KOG0933|consen 674 RQLQKLKQAQKELRAIQKELEALERELKSL-----EAQSQKFR--DLKQQLELKLHELALLEKR---------------- 730 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH--HHHHHHHHHHHHHHHHHHH----------------
Confidence 455666666677788888888888888877 34455554 6788888888888763111
Q ss_pred cccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhh----hHHhhHHHHHhhhhcchhhh
Q 002628 236 EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERS----SLESSLKELESKLSISQEDV 311 (899)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 311 (899)
...+.-|-+..++..+++|=-.+++.| |+..-.+++-++-+.++|+--. .=++.|+||+..+-.+-.-+
T Consensus 731 ----~~~~e~~~~~~~~~~~~e~v~e~~~~I---ke~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 731 ----LEQNEFHKLLDDLKELLEEVEESEQQI---KEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred ----HhcChHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 112223444555555544432222222 2222334444455555554322 12344455554443322211
Q ss_pred hccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHh-hhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHH
Q 002628 312 AKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVL-QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (899)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (899)
.+...-|+|-++.-..|.--..+..+++..+ +|.+.+.++++.|++.+...-. ...+.+.-.+-.|+++
T Consensus 804 -------e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~---kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 804 -------EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEA---KVDKVEKDVKKAQAEL 873 (1174)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHhHHHHHHHHH
Confidence 1222334444443333333333444444333 3456677788888887765432 2344455677889999
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHH
Q 002628 391 KLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEF 445 (899)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (899)
+.....+...|.+|..++..-. .+.+-..+.+-+.++ +.+-+..|+.+-
T Consensus 874 ~~~k~k~~~~dt~i~~~~~~~e----~~~~e~~~~~l~~kk--le~e~~~~~~e~ 922 (1174)
T KOG0933|consen 874 KDQKAKQRDIDTEISGLLTSQE----KCLSEKSDGELERKK--LEHEVTKLESEK 922 (1174)
T ss_pred HHHHHHHHhhhHHHhhhhhHHH----HHHHHhhcccchHHH--HHhHHHHhhhhH
Confidence 9999999999999988665444 444433333333444 555555566443
No 128
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.77 E-value=0.015 Score=59.76 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=28.5
Q ss_pred hHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecCccCCCC
Q 002628 719 KGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAW 766 (899)
Q Consensus 719 K~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNGID~e~f 766 (899)
..++..||..++++...+..+-. ....||.||+-|||++.+
T Consensus 130 l~~l~~~D~~isPT~wQ~~~fP~-------~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 130 LLALEQADAGISPTRWQRSQFPA-------EFRSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHhCCcCcCCCHHHHHhCCH-------HHHcCcEEeecccchhhc
Confidence 45567899888887755543211 124799999999999764
No 129
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.64 E-value=0.18 Score=55.13 Aligned_cols=74 Identities=8% Similarity=-0.051 Sum_probs=53.3
Q ss_pred CcEEEEEecCCCccCHHHHHHHHHHhhccCcEE-EEEcCCCcc--CccH-----------------HHHHHhcCeeEEcC
Q 002628 806 KPLVGCITRLVPQKGVHLIRHAIYRTLELGGQF-ILLGSSPVP--HIQV-----------------YPILLSSFSFLRKH 865 (899)
Q Consensus 806 kpLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqL-VIVG~Gp~~--~Lqk-----------------e~iyaaADIfVlPS 865 (899)
+.++++.|-..+.+....+++++..+. .++++ +|+|.+... .+++ ..+|+.||++|.+
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~- 248 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGA- 248 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEEC-
Confidence 357888998888777778888887653 34443 467876421 1111 1899999999995
Q ss_pred CcCcChHHHHHHccCCcccc
Q 002628 866 IFNICNLYIKLGQGGDLTVN 885 (899)
Q Consensus 866 ~~EpFGLV~LEAMg~gl~Vi 885 (899)
.|.|..|++++|+|++
T Consensus 249 ----~G~T~~E~~a~g~P~i 264 (279)
T TIGR03590 249 ----AGSTSWERCCLGLPSL 264 (279)
T ss_pred ----CchHHHHHHHcCCCEE
Confidence 6899999999998874
No 130
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.62 E-value=0.3 Score=58.23 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=78.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh-------hHHHHH--Hhhhhh------HHhhHHHHHhhhhcchhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD-------ERVVML--EMERSS------LESSLKELESKLSISQEDV 311 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~ 311 (899)
.+.+|.+.|+.++..++..|..|...+..+.... .++..+ ++|... |...+.+++..+..++..-
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~ 282 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ 282 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4566666666666655555555555444433222 112111 222221 2233333444444444444
Q ss_pred hccccchhhhhhHHH-------HHHHHHHHHHHHhhhhhhHHHHhhh----hHHHHHHHHHHHHHHhhhhhhhhchHHHH
Q 002628 312 AKLSTLKVECKDLYE-------KVENLQGLLAKATKQADQAISVLQQ----NQELRKKVDKLEESLDEANIYKLSSEKMQ 380 (899)
Q Consensus 312 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (899)
.++..|+.+...+-+ +++-|..-|..|.+.-|+.+.-|-+ +.+|..++......|+++. .+..
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~------~q~~ 356 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR------SQWA 356 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 445555554444433 3444555556666666666554432 3334333443333343333 2233
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 002628 381 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 419 (899)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (899)
+.-..+++-+..-.++++.-..++...=+-|++.-.|=|
T Consensus 357 qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~q 395 (546)
T PF07888_consen 357 QEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQ 395 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555556666666666555555655544444
No 131
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.61 E-value=0.32 Score=64.19 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=62.8
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 002628 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (899)
..++.+..|-..++..|+.|..++..... +..+..++.|...++..+..+..++...++...++ +.+...|.++..
T Consensus 792 ~~i~r~~~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~---~~eI~~Lq~ki~ 867 (1311)
T TIGR00606 792 TIMERFQMELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQ---QEQIQHLKSKTN 867 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34455666777777778887777775544 44666777777777777777766666555544332 333334444444
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhh
Q 002628 330 NLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEA 369 (899)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (899)
++.....+..+ .+++-++|...++.|++.+++.
T Consensus 868 el~~~klkl~~-------~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 868 ELKSEKLQIGT-------NLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333 4445566666666666555443
No 132
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.26 Score=55.71 Aligned_cols=222 Identities=16% Similarity=0.109 Sum_probs=116.7
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCCCCCCCCChhhhh-hcCCcccccCCcccccccccccchh
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELA-SCGLDVQQLNRPDRMQDNSAHDRIN 716 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~~fqG~~p~~~L~-~~GL~~~~l~~pdrL~d~~~~~~in 716 (899)
...||+|-.+++.+.+.-+..+ .|. -++++++++..||+.|. . .+. ..|. .+.+.+ + ...
T Consensus 101 ~~~~~~ilvQNPP~iPtliv~~-~~~--~l~~~KfiIDWHNy~Ys--l---~l~~~~g~-~h~lV~---l-------~~~ 161 (444)
T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVCV-LYS--ILTGAKFIIDWHNYGYS--L---QLKLKLGF-QHPLVR---L-------VRW 161 (444)
T ss_pred ccCCcEEEEeCCCCCchHHHHH-HHH--HHhcceEEEEehhhHHH--H---HHHhhcCC-CCchHH---H-------HHH
Confidence 4689999999977533211111 111 15789999999999763 0 111 1111 111110 0 011
Q ss_pred hhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEecC-----ccCCC----CCCCcchhhhhhcccccccchh
Q 002628 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNG-----IDTDA----WNPATDTFLKVQYNANDLQGKA 787 (899)
Q Consensus 717 ~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpNG-----ID~e~----f~P~~d~~L~~~ysaddl~GK~ 787 (899)
.++..-+.||.-.||+..++++ |...++. .+..++|.- ++.+. |.|-... ...|.+-..++|.
T Consensus 162 ~E~~fgk~a~~nLcVT~AMr~d----L~qnWgi--~ra~v~YDrPps~~~~l~~~H~lf~~l~~d--~~~f~ar~~q~~~ 233 (444)
T KOG2941|consen 162 LEKYFGKLADYNLCVTKAMRED----LIQNWGI--NRAKVLYDRPPSKPTPLDEQHELFMKLAGD--HSPFRAREPQDKA 233 (444)
T ss_pred HHHHhhcccccchhhHHHHHHH----HHHhcCC--ceeEEEecCCCCCCCchhHHHHHHhhhccc--cchhhhcccccch
Confidence 2344556788889999998877 2111111 133344321 11110 1110000 0011111233444
Q ss_pred hhHHHHHHHcC--CCCCCCCC-cEEEEEecCCCccCHHHHHHHHHHh-----hc----cCcEEEEEcCCCccCc-----c
Q 002628 788 ENKESIRKHLG--LSSADARK-PLVGCITRLVPQKGVHLIRHAIYRT-----LE----LGGQFILLGSSPVPHI-----Q 850 (899)
Q Consensus 788 ~~K~aLRk~LG--Ls~~d~~k-pLVgfVGRL~~qKGvdlLIeAi~~L-----le----~dvqLVIVG~Gp~~~L-----q 850 (899)
..+.++-+++. .-.-.+.+ .+++.-..++|...+..|++|+..- .+ ..+-++|-|.||..+. .
T Consensus 234 ~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~ 313 (444)
T KOG2941|consen 234 LERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIH 313 (444)
T ss_pred hhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHH
Confidence 44455544443 11111233 4577778999999999999999832 12 1456677799997631 1
Q ss_pred H---------------H---HHHHhcCeeEEc--CCc-CcChHHHHHHccCCccccc
Q 002628 851 V---------------Y---PILLSSFSFLRK--HIF-NICNLYIKLGQGGDLTVNN 886 (899)
Q Consensus 851 k---------------e---~iyaaADIfVlP--S~~-EpFGLV~LEAMg~gl~Vid 886 (899)
+ + .+++.||+.|+- |.. =-.|+-++.-.|||+||.+
T Consensus 314 ~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA 370 (444)
T KOG2941|consen 314 EKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 370 (444)
T ss_pred HhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceee
Confidence 1 0 899999987764 332 1345566666799988753
No 133
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.58 E-value=0.82 Score=56.71 Aligned_cols=181 Identities=26% Similarity=0.381 Sum_probs=104.7
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002628 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (899)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
.+++=||-.||-|+.|+...|++- .. .-+-||..|..-|..||+.+-.|+.-..+-
T Consensus 339 Er~deletdlEILKaEmeekG~~~-~~-----------------------~ss~qfkqlEqqN~rLKdalVrLRDlsA~e 394 (1243)
T KOG0971|consen 339 ERVDELETDLEILKAEMEEKGSDG-QA-----------------------ASSYQFKQLEQQNARLKDALVRLRDLSASE 394 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-cc-----------------------cchHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 345556666666666666664441 01 114566677777777777666665432221
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHH-------HHh
Q 002628 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAI-------SVL 349 (899)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 349 (899)
+ --..++-||-.-..+.+.+|++.- ..|..++++++..++....|+|-|. ..-
T Consensus 395 k---~d~qK~~kelE~k~sE~~eL~r~k-----------------E~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt 454 (1243)
T KOG0971|consen 395 K---QDHQKLQKELEKKNSELEELRRQK-----------------ERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT 454 (1243)
T ss_pred H---HHHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 1 122344444444444444444321 2577888888888888888888764 234
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc------------------cchHHHHH---HH
Q 002628 350 QQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ------------------RSDEEIHS---YV 408 (899)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~---~~ 408 (899)
+.|=+|.+||.-||+-.+.- |.+.+.+|.|++--+.+|-+|+ ..-+-++. -|
T Consensus 455 dknlnlEekVklLeetv~dl-------Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI 527 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDL-------EALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTI 527 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57888999999998876543 4444555555554444443333 22222222 25
Q ss_pred HHHHHHHHHHHHHHHhhHhh
Q 002628 409 QLYQESVKEFQDTLHSLKEE 428 (899)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~ 428 (899)
.+|.+-|.-.|+-|..++..
T Consensus 528 ~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 528 KKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777776543
No 134
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.57 E-value=0.37 Score=60.19 Aligned_cols=125 Identities=26% Similarity=0.346 Sum_probs=91.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhhhhhH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVECKDL 324 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 324 (899)
--.+..||+-|..|-+.-++||++|.....-.|- +.+|+|--.|...+.+|++....-|.-..+| ++|+..-..|
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456778999999999999999999877655555 8899999999999999998887766555543 4555444333
Q ss_pred ---HHHHHH-----------HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhch
Q 002628 325 ---YEKVEN-----------LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSS 376 (899)
Q Consensus 325 ---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (899)
|+-..+ +|..-...|. +.|.-.+=+|+.+-.-+..++++==|++|+|...
T Consensus 342 ~~~~ellq~~se~~E~en~Sl~~e~eqLts--~ralkllLEnrrlt~tleelqsss~Ee~~SK~le 405 (1195)
T KOG4643|consen 342 DGQMELLQIFSENEELENESLQVENEQLTS--DRALKLLLENRRLTGTLEELQSSSYEELISKHLE 405 (1195)
T ss_pred hhhhhHhhhhhcchhhhhhhHHHHHHHhhh--HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 443333 3333333333 6688889999999999999999888888888654
No 135
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.45 E-value=0.35 Score=65.00 Aligned_cols=135 Identities=22% Similarity=0.363 Sum_probs=103.2
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHH
Q 002628 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRK 357 (899)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (899)
.--+....++..+..|+..++||..+|..+-.-+.+-+...+- .|-.+|-.|+..|+..+..--.++-.+ .-..+
T Consensus 1762 ~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~--~Learir~LE~~l~~E~~~~~e~~k~~---rk~er 1836 (1930)
T KOG0161|consen 1762 KEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIA--KLEARIRELESELEGEQRRKAEAIKGL---RKKER 1836 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH--HHHHHHHHHHHHHhHhhhhhHHHhHHH---HHHHH
Confidence 3345567788888899999999999999988887777775553 678899999999999887766554433 34556
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002628 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (899)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (899)
+|..|+.-+++ .+..-+.+|...|.+++|++.+.-.+....++..++...|...--+.++
T Consensus 1837 ~vkEl~~q~ee---d~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~ 1896 (1930)
T KOG0161|consen 1837 RVKELQFQVEE---DKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEE 1896 (1930)
T ss_pred HHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666666655 4566778888999999999999999988888888877666655444444
No 136
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=96.34 E-value=0.23 Score=56.07 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=45.9
Q ss_pred CCcEEEEEecCCC---ccCHHHHHHHHHHhhccCcEEEE-EcCCCcc------C------ccHHHHHHhcCeeEEcCCcC
Q 002628 805 RKPLVGCITRLVP---QKGVHLIRHAIYRTLELGGQFIL-LGSSPVP------H------IQVYPILLSSFSFLRKHIFN 868 (899)
Q Consensus 805 ~kpLVgfVGRL~~---qKGvdlLIeAi~~Lle~dvqLVI-VG~Gp~~------~------Lqke~iyaaADIfVlPS~~E 868 (899)
..++++..|.... ++....+++|+..+ +.++++ +|.+... . +....+|..||++|.-.
T Consensus 239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---~~~~i~~~g~~~~~~~~~~~~v~~~~~~p~~~ll~~~d~~I~hg--- 312 (401)
T cd03784 239 RPPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLLPRCAAVVHHG--- 312 (401)
T ss_pred CCcEEEeCCCCcccCHHHHHHHHHHHHHHc---CCeEEEEccCccccccCCCCceEEeCCCCHHHHhhhhheeeecC---
Confidence 3456677788754 44556666666653 556554 5654321 1 11238999999999433
Q ss_pred cChHHHHHHccCCccc
Q 002628 869 ICNLYIKLGQGGDLTV 884 (899)
Q Consensus 869 pFGLV~LEAMg~gl~V 884 (899)
-..|.+||+.+|+|+
T Consensus 313 -G~~t~~eal~~GvP~ 327 (401)
T cd03784 313 -GAGTTAAALRAGVPQ 327 (401)
T ss_pred -CchhHHHHHHcCCCE
Confidence 236899999999776
No 137
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=96.34 E-value=0.27 Score=53.50 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=49.4
Q ss_pred CCcEEEEEecCCCccCHHHHHHHHHHhhccCcEEEEEcCCCcc----C-----cc-HH--HHHHhcCeeEEcCCcCcChH
Q 002628 805 RKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVP----H-----IQ-VY--PILLSSFSFLRKHIFNICNL 872 (899)
Q Consensus 805 ~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVIVG~Gp~~----~-----Lq-ke--~iyaaADIfVlPS~~EpFGL 872 (899)
...+++++|..... .+++++..+. +.+++++|.+... . +. .. .++++||++|.-+ |.
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~~--~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~-----G~ 260 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKALP--DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKG-----GY 260 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhCC--CCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECC-----CH
Confidence 34578889988766 5667777653 6788888876421 1 11 12 8999999999875 55
Q ss_pred H-HHHHccCCccc
Q 002628 873 Y-IKLGQGGDLTV 884 (899)
Q Consensus 873 V-~LEAMg~gl~V 884 (899)
+ .+||+.+|.|+
T Consensus 261 ~t~~Ea~~~g~P~ 273 (318)
T PF13528_consen 261 TTISEALALGKPA 273 (318)
T ss_pred HHHHHHHHcCCCE
Confidence 4 89999888776
No 138
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.24 E-value=2.7 Score=55.08 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=25.0
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhh
Q 002628 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARI 189 (899)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (899)
+..|..-|...+..+.-+-.....+-..+..+....+++..++..++.++.+.+..+
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333333334444444444455555555555544444433
No 139
>PRK03918 chromosome segregation protein; Provisional
Probab=96.23 E-value=1.9 Score=54.22 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 002628 409 QLYQESVKEFQDTLHSLK 426 (899)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~ 426 (899)
..|...+++-+.-+..|+
T Consensus 455 ~~~~~ei~~l~~~~~~l~ 472 (880)
T PRK03918 455 EEYTAELKRIEKELKEIE 472 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555554444433
No 140
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=1.2 Score=56.71 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=44.4
Q ss_pred ccccccccCCCccccccchhHHHH------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 002628 115 KESLVLNCDGGEELSTSQLDNLIS------MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINA 177 (899)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (899)
|++.+.+.++.+-| --|||+|| -|.--..-+..||.-|.+-...+.-+.+||.+|.+-.|+
T Consensus 240 MKPk~~~e~d~GmL--EYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~ 306 (1293)
T KOG0996|consen 240 MKPKAQTENDEGML--EYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNE 306 (1293)
T ss_pred cCCCCCCCCcchHH--HHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44544444443332 24788887 467777778899999999999999999999999887664
No 141
>PRK11637 AmiB activator; Provisional
Probab=96.20 E-value=0.37 Score=56.02 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=57.4
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHH
Q 002628 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKL 209 (899)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (899)
.-+|+++-.-|+..++.|--+....-.+...+..+-.+.+.++.+|+.++..+++++.+|.-..+ .+.-++++++++
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~---eI~~~q~~l~~~ 122 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA---SIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44677777777777777777777777777777777777777788888887777777777765433 233455555555
Q ss_pred HHHhhhc
Q 002628 210 QHELTHR 216 (899)
Q Consensus 210 ~~~~~~~ 216 (899)
+..|..+
T Consensus 123 ~~~l~~r 129 (428)
T PRK11637 123 ERLLAAQ 129 (428)
T ss_pred HHHHHHH
Confidence 5555443
No 142
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.17 E-value=1.2 Score=58.12 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=3.5
Q ss_pred EEEECC
Q 002628 643 IIHCHD 648 (899)
Q Consensus 643 IIH~Hd 648 (899)
||.+|.
T Consensus 1123 IvIThr 1128 (1163)
T COG1196 1123 IVITHR 1128 (1163)
T ss_pred EEEEcC
Confidence 555664
No 143
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.08 E-value=1.6 Score=48.25 Aligned_cols=164 Identities=23% Similarity=0.380 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccccccc
Q 002628 161 LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVL 240 (899)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (899)
++.+-.||..|+.+++.+...+.+...++.-.. -...-++.++.+||+++-..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~---~~~~~le~el~~lrk~ld~~------------------------ 115 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEEL---AERKDLEEELESLRKDLDEE------------------------ 115 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhhh------------------------
Confidence 444555555555555555555555444433322 22335678888888766542
Q ss_pred CCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh-hhhhhhHH---HHHH---hhhhhHHhhHHHHHhhhhcchhhhhc
Q 002628 241 NNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS-VKDADERV---VMLE---MERSSLESSLKELESKLSISQEDVAK 313 (899)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (899)
+..-..|..+-..|+++|.|+|..-.. +.+....+ ...+ .-...|.++|+++-..... .
T Consensus 116 --------~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~------~ 181 (312)
T PF00038_consen 116 --------TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEE------I 181 (312)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHH------H
T ss_pred --------hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHH------H
Confidence 333344455555566666666543222 22222222 1111 1133477777776544421 1
Q ss_pred cccchhhhhhHHH-HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 002628 314 LSTLKVECKDLYE-KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (899)
Q Consensus 314 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (899)
+..-+.|...||. |++.++.-.... .+.+-.+-....+++.+++.|+..|..
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~---~~~~~~~~~E~~~~r~~~~~l~~el~~ 234 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKS---SEELESAKEELKELRRQIQSLQAELES 234 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhccccccccccccccc---ccccchhHhHHHHHHhhhhHhhhhhhc
Confidence 1222334446654 566666555443 333333455666777777777766544
No 144
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.06 E-value=0.63 Score=58.05 Aligned_cols=224 Identities=21% Similarity=0.323 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccc
Q 002628 157 ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (899)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (899)
|.+.+..+-+|.|.++.++..|...+-++..+|.---+ ..+-..+++++|...|-..|.+-..+.. . .....
T Consensus 112 ~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~---~l~~~~eei~kL~e~L~~~g~~~~~~~~----~-~~~~~ 183 (775)
T PF10174_consen 112 AQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQ---TLDKADEEIEKLQEMLQSKGLSAEAEEE----D-NEALR 183 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCcccchhh----h-hHHHH
Confidence 34566667778888888888888888877766654333 2345567888998888666655311111 0 00111
Q ss_pred ccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh----------hhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV----------KDADERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
........++.|-..+.....+++.++..+..--+...+- -.-|..+..+||--..|+.-+.-|.++...
T Consensus 184 ~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 184 RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGEL 263 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1122234455555556666667766655433211111111 112345555555555566666667776666
Q ss_pred chhhhh----ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH----HHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHH
Q 002628 307 SQEDVA----KLSTLKVECKDLYEKVENLQGLLAKATKQADQA----ISVLQQNQELRKKVDKLEESLDEANIYKLSSEK 378 (899)
Q Consensus 307 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (899)
+.+|-. .+..-+-.++..=.|++.+..-|.+..-.-.-. -..-.++.|.|.-+|.|++||....- ..+.
T Consensus 264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~---~~~~ 340 (775)
T PF10174_consen 264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQ---EAEM 340 (775)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 665533 334444445555555666666665543111111 12344788899999999999976543 2345
Q ss_pred HHHHHHHHHHHHH
Q 002628 379 MQQYNELMQQKMK 391 (899)
Q Consensus 379 ~~~~~~~~~~~~~ 391 (899)
||.-+|.|+.++.
T Consensus 341 Lqsdve~Lr~rle 353 (775)
T PF10174_consen 341 LQSDVEALRFRLE 353 (775)
T ss_pred HHHhHHHHHHHHH
Confidence 5555665555543
No 145
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.05 E-value=2.2 Score=57.85 Aligned_cols=102 Identities=30% Similarity=0.380 Sum_probs=62.6
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhH--------HHHHHhh---hhhHHhhHHHHHhhhhcchhhh
Q 002628 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADER--------VVMLEME---RSSLESSLKELESKLSISQEDV 311 (899)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 311 (899)
+.+-.|.+|=..+.+-+..|.+|++..+.+....+..-.+ -..||+| |..++...+.||..+..+|+.+
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~ 1057 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344666666667777777777777777776665543322 2334444 4458888899999998888887
Q ss_pred hccccch-----------hhhhhHHHHHHHHHHHHHHHhhhhhh
Q 002628 312 AKLSTLK-----------VECKDLYEKVENLQGLLAKATKQADQ 344 (899)
Q Consensus 312 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (899)
..+...+ .|--.+..++++++.++..+++++.+
T Consensus 1058 ~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~e 1101 (1930)
T KOG0161|consen 1058 EELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKE 1101 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7543332 22333445566666666665555443
No 146
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.88 E-value=3.3 Score=44.66 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=47.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhh
Q 002628 142 NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTH 215 (899)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (899)
.++..+-.+...-..+-..++++-.|-..|+++|..||..|..++.|+..+.+.=-.++---++.+.-++.|-+
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555566777888888899999999999999999888887766433333333333344444433
No 147
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.82 E-value=1.8 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=12.3
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhh
Q 002628 287 EMERSSLESSLKELESKLSISQED 310 (899)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~ 310 (899)
..++..+...+.+++.++....++
T Consensus 329 ~~~~~~~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 329 MDEFNEQSKKLLELKNKISTNKQS 352 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444
No 148
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.66 E-value=3.2 Score=49.92 Aligned_cols=10 Identities=30% Similarity=0.199 Sum_probs=4.9
Q ss_pred HHHHHHhhhh
Q 002628 447 SRLLLIIDGW 456 (899)
Q Consensus 447 ~~lll~~d~~ 456 (899)
.+|=.|+|..
T Consensus 448 ~~Le~r~~~~ 457 (546)
T PF07888_consen 448 ERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHh
Confidence 3444555544
No 149
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.64 E-value=0.89 Score=55.74 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchh
Q 002628 266 IKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQE 309 (899)
Q Consensus 266 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (899)
+..+...+.++. ....++..+-++.+.++..+.+++.++..+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~ 419 (650)
T TIGR03185 375 LTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS 419 (650)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334445555555 34566777888888888888888888877643
No 150
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.61 E-value=2.7 Score=51.53 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhh-----hHh-hhHHHHHHHHHHhhhcccCc
Q 002628 147 ILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI-----HVE-LLEDQLQKLQHELTHRGVSE 220 (899)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~ 220 (899)
+..++|-=.+--+.+.+...||+.....|..||..|++...++.......- -+| =+.++++.|+.|+-
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE------ 97 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE------ 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH------
Confidence 344555555667889999999999999999999999997666654432211 112 13333344444331
Q ss_pred ccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHH
Q 002628 221 HSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKE 299 (899)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 299 (899)
.|..++...-++|- .|+.. .+-++|+..||+.-..++....|
T Consensus 98 --------------------------~L~~qlqaqv~~ne-----------~Ls~L~~EqEerL~ELE~~le~~~e~~~D 140 (617)
T PF15070_consen 98 --------------------------SLEEQLQAQVENNE-----------QLSRLNQEQEERLAELEEELERLQEQQED 140 (617)
T ss_pred --------------------------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222221 22222 34566666666666666666666
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 002628 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (899)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (899)
..+-|...+.|-..+|-----=+.|-+.+..||.-+-+.||.
T Consensus 141 ~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 666555555554444433222344566666666655555554
No 151
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.51 E-value=2.2 Score=51.19 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=35.4
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 002628 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINAL 178 (899)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (899)
.||.-+-.=+..+++-+-..-..|.+||.+|++.-.-.+.|..+|+..
T Consensus 34 ~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~ 81 (522)
T PF05701_consen 34 TELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKA 81 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555667777777778899999999988877777777766643
No 152
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.45 E-value=2.1 Score=51.87 Aligned_cols=156 Identities=18% Similarity=0.282 Sum_probs=97.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
.+...++.+++.|..|+..|+.+++.----.+-.+++..++++...+++.+++++.++...... .+.++.++..+-+
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~---ysel~e~leel~e 390 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA---YSELQEELEEILK 390 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 4577788889999999999999888744434456677788888888888888777665554444 4444444444544
Q ss_pred HHHHHHHHHHHHhhhhhhHHH----HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchH
Q 002628 327 KVENLQGLLAKATKQADQAIS----VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDE 402 (899)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (899)
+++.+..-.....+.....-. .-++=+.++.++..++..++..|+..++..-+..+ ...+.+++.|..++....=
T Consensus 391 ~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~-~~~~~~i~~l~~~L~~g~V 469 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMF-FEVSDEIEALAEELEEKPI 469 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH-HHHHHHHHHHHHHhccCCC
Confidence 444444333332222221100 11222455667777777788888888766644444 4678888888888888443
Q ss_pred HHHH
Q 002628 403 EIHS 406 (899)
Q Consensus 403 ~~~~ 406 (899)
-+.+
T Consensus 470 Nm~a 473 (569)
T PRK04778 470 NMEA 473 (569)
T ss_pred CHHH
Confidence 4444
No 153
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.39 E-value=3.9 Score=53.85 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=62.4
Q ss_pred cchhhHhhhhhhhhhccc-hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 002628 245 IHSFSKELDSLKTENLSL-KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 323 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (899)
+.....+|+.+.+.-.-- +.||+.+...++...+-...+..++++...|.++..++|+++..-...+..- +.-++..
T Consensus 322 l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~--~~~~~~~ 399 (1201)
T PF12128_consen 322 LARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEA--FNRQQER 399 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 334455666665544443 4479999999999999999999999999999999999999887654432211 1112223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH
Q 002628 324 LYEKVENLQGLLAKATKQADQA 345 (899)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~ 345 (899)
.-++...++.-.+....+.+.+
T Consensus 400 ~~~~~~~~~e~~~~~~~~~~~~ 421 (1201)
T PF12128_consen 400 LQAQQDEIREEKAERREQIEEE 421 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 154
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.32 E-value=4 Score=54.86 Aligned_cols=176 Identities=21% Similarity=0.257 Sum_probs=107.8
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh---
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD--- 323 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 323 (899)
.++.++.+++.|+-.+..-+...-..+..+++ -+++++..+.++...-|+.+..-.+++.+|.-|+-+...
T Consensus 1001 ~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~------dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~ 1074 (1822)
T KOG4674|consen 1001 DLSREISSLQNELKSLLKAASQANEQIEDLQN------DLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCND 1074 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776665544443333333322 234444444444444444444444444444444444333
Q ss_pred ----------------------HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhh--hhhchHHH
Q 002628 324 ----------------------LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI--YKLSSEKM 379 (899)
Q Consensus 324 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 379 (899)
|-++=..|...+....+ +......||.-|+++|+.+-.-..+-|+ .+.....|
T Consensus 1075 e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~---~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL 1151 (1822)
T KOG4674|consen 1075 ELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKK---RIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDL 1151 (1822)
T ss_pred HHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHH
Confidence 33444444444444333 3456788999999999998776653233 34445668
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002628 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (899)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (899)
+...-.|+.....++.+++..-.+-..+.+.|..+=+.-++....|..+.++
T Consensus 1152 ~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~ 1203 (1822)
T KOG4674|consen 1152 QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS 1203 (1822)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999998888888888877656666666666666655
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.31 E-value=0.38 Score=48.21 Aligned_cols=102 Identities=30% Similarity=0.493 Sum_probs=79.4
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhh---hhhHHHHhh-hhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 002628 313 KLSTLKVECKDLYEKVENLQGLLAKATKQ---ADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 388 (899)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (899)
|+..|+.|--+|.++++.++.-+..+..+ .++=|..|+ .|+.|...||++++.|.++.-.---+++..+-++-|+.
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r 80 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR 80 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence 45677888888889998888877655433 344454444 57888999999999999998888888888888899999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHH
Q 002628 389 KMKLLEERLQRSDEEIHSYVQLYQES 414 (899)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (899)
+|.+||+.+..++.-...-..+..+.
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877766655543
No 156
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.27 E-value=0.98 Score=57.53 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=57.1
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHH------HHHHHHH-HHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhh
Q 002628 130 TSQLDNLISMIRNAEKNILLLNEA------RVQALED-LHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (899)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
..+|++...+.++..+-.+-+++. |..-|+- +++...+-..+-..|+-||.++++..+++...+-.+-++..+
T Consensus 784 e~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~ 863 (1293)
T KOG0996|consen 784 ERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKEL 863 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHH
Confidence 345666666665554444334433 3333443 666666666777778888888888888866666677777888
Q ss_pred HHHHHHHHHHhhh
Q 002628 203 EDQLQKLQHELTH 215 (899)
Q Consensus 203 ~~~~~~~~~~~~~ 215 (899)
++++++++.|+-.
T Consensus 864 ~~~ie~l~kE~e~ 876 (1293)
T KOG0996|consen 864 EEQIEELKKEVEE 876 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887755
No 157
>PRK01156 chromosome segregation protein; Provisional
Probab=95.24 E-value=4.4 Score=51.46 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=14.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHH
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKA 271 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (899)
+..+.+++..|+.+=..++..|..|+.
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 158
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.17 E-value=8.4 Score=48.30 Aligned_cols=182 Identities=23% Similarity=0.327 Sum_probs=95.9
Q ss_pred HHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchh
Q 002628 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSF 248 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (899)
+.+++.++.+||-+++.. -.+|+ .-++-|+||+|+++....-+.... +.
T Consensus 361 ~q~~~ql~~le~~~~e~q----~~~qe------~~~e~eqLr~elaql~a~r~q~ek---------------------a~ 409 (980)
T KOG0980|consen 361 EQYENQLLALEGELQEQQ----REAQE------NREEQEQLRNELAQLLASRTQLEK---------------------AQ 409 (980)
T ss_pred HHHHHHHHHHHHHHHHhH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 445666667777766542 22222 223445999999987544221111 00
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (899)
.. .+.+...+.-.++-++.+|.++. .|+.|...|-.+..+.-.++..++.++-+++...- +|=+.|
T Consensus 410 ~~-~ee~e~~~l~~e~ry~klkek~t----------~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~---~L~d~l 475 (980)
T KOG0980|consen 410 VL-VEEAENKALAAENRYEKLKEKYT----------ELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT---NLNDQL 475 (980)
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHH
Confidence 00 33444455556666777776554 46677788888889999999998888774433333 456666
Q ss_pred HHHHHHHHHHh-hhhhhHHHHhhhhHHHH---HHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 002628 329 ENLQGLLAKAT-KQADQAISVLQQNQELR---KKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL 397 (899)
Q Consensus 329 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (899)
|.++...+.+. |.-+++=.+-+--++|. .++.+|+..+ -|...-....++++-+++.||-+++++-.
T Consensus 476 e~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~--~~~~qs~~~~~~~l~~~l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 476 EELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL--SNLAQSHNNQLAQLEDLLKQKDRLAAELV 546 (980)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66665554421 11122211111122222 2222222221 12222234456667777788877765533
No 159
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=95.12 E-value=0.057 Score=63.16 Aligned_cols=63 Identities=6% Similarity=-0.072 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhc--cCcEEEEEcCCCc--cCcc---------------H---HHHHHhcCeeEEcCCcCcChHHHHHHcc
Q 002628 822 HLIRHAIYRTLE--LGGQFILLGSSPV--PHIQ---------------V---YPILLSSFSFLRKHIFNICNLYIKLGQG 879 (899)
Q Consensus 822 dlLIeAi~~Lle--~dvqLVIVG~Gp~--~~Lq---------------k---e~iyaaADIfVlPS~~EpFGLV~LEAMg 879 (899)
+..|+++..+.+ .+++|.| |.+.. ..+. . +.+|..||+++-.|..|+||++++|||+
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~ 369 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE 369 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH
Confidence 788899998876 4899999 77654 2221 1 1999999999999999999999999999
Q ss_pred CCcccc
Q 002628 880 GDLTVN 885 (899)
Q Consensus 880 ~gl~Vi 885 (899)
.|+||+
T Consensus 370 ~G~pI~ 375 (438)
T TIGR02919 370 YNLLIL 375 (438)
T ss_pred cCCcEE
Confidence 999985
No 160
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.06 E-value=4.3 Score=52.29 Aligned_cols=111 Identities=24% Similarity=0.348 Sum_probs=66.7
Q ss_pred hHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH-HHHHHHHHHHHHHhhhhhhhh
Q 002628 296 SLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ-ELRKKVDKLEESLDEANIYKL 374 (899)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 374 (899)
..+++|.++...|+.-.+|+....+-.+.-++.-..+.-+....+-++.-+..|+..+ .+....-|+++ |++++....
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~ 660 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERI 660 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Confidence 4457778888888888888777766555566665655555555555666666665443 34445566666 777776665
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 002628 375 SSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (899)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (899)
+.-.....-..+.-++|.++++++.-..|-+-.
T Consensus 661 ~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 661 SDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543222333445556666666666555554443
No 161
>PRK01156 chromosome segregation protein; Provisional
Probab=94.82 E-value=8.2 Score=49.06 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 002628 403 EIHSYVQLYQESVKEFQDTLHSLKEES 429 (899)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (899)
.+..|+..|...+++-..-+..|.++-
T Consensus 466 ~~~e~i~~~~~~i~~l~~~i~~l~~~~ 492 (895)
T PRK01156 466 KSNHIINHYNEKKSRLEEKIREIEIEV 492 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777776654
No 162
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.79 E-value=17 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=14.8
Q ss_pred CCcccCCcHHHHHHHHHHHHHH
Q 002628 522 APVAKVGGLGDVVAGLGKALQK 543 (899)
Q Consensus 522 ~P~akvGGLg~vV~~LArALqk 543 (899)
-|+....|-+.++..||-+|+-
T Consensus 811 r~~~~LSGGE~~~~sLalrLAL 832 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLAL 832 (908)
T ss_pred cccccCCchHHHHHHHHHHHHH
Confidence 3555555667888888877763
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.76 E-value=4.1 Score=50.12 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=18.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 002628 343 DQAISVLQQNQELRKKVDKLEESLDEAN 370 (899)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (899)
.++...+.+-..++.++|.++..|..+.
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~ 418 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIP 418 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444456667777777888877776654
No 164
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.73 E-value=1.5 Score=54.40 Aligned_cols=93 Identities=30% Similarity=0.364 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhh----hh
Q 002628 201 LLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN----SV 276 (899)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 276 (899)
-||.++++||.||.+....|.. +...++ .+..+ -..+..||..+|.||..|.+-+..|..... ..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~E-LRsqis--------~l~~~--Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l 490 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQE-LRSQIS--------SLTNN--ERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSL 490 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHh--------hcccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999887666532 221111 01111 127788999999999999998887765443 33
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 002628 277 KDADERVVMLEMERSSLESSLKELESKL 304 (899)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (899)
...+.++....+-|..+|+.|.+-.+.-
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888888887766443
No 165
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=94.71 E-value=2.3 Score=47.13 Aligned_cols=60 Identities=7% Similarity=-0.073 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhhccCcEEEEEcCCCcc-Cc---------c-HH--HHHHhcCeeEEcCCcCcChHHHHHHccCCcccc
Q 002628 820 GVHLIRHAIYRTLELGGQFILLGSSPVP-HI---------Q-VY--PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 885 (899)
Q Consensus 820 GvdlLIeAi~~Lle~dvqLVIVG~Gp~~-~L---------q-ke--~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vi 885 (899)
|...+++++..+. ++.+++.+..... .+ . .+ .+|+.||++|.-+-+. +++||+.+|+|++
T Consensus 199 ~~~~l~~~l~~~~--~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~----t~~Ea~~~g~P~l 271 (321)
T TIGR00661 199 YRYKILELLGKIA--NVKFVCYSYEVAKNSYNENVEIRRITTDNFKELIKNAELVITHGGFS----LISEALSLGKPLI 271 (321)
T ss_pred CHHHHHHHHHhCC--CeEEEEeCCCCCccccCCCEEEEECChHHHHHHHHhCCEEEECCChH----HHHHHHHcCCCEE
Confidence 5567777776653 4455443322111 11 1 12 8899999999988443 6899999998773
No 166
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.64 E-value=1.5 Score=44.06 Aligned_cols=87 Identities=24% Similarity=0.413 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhh-hhhchHHHHH---HHHHHHHHHHHHHHhhccch
Q 002628 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI-YKLSSEKMQQ---YNELMQQKMKLLEERLQRSD 401 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 401 (899)
+.|+.++.-|..+...++.+-...+.+..|.++|.-||+.|+++.- .+...+|+++ -.+-+-.+|+.||.+.....
T Consensus 49 ~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 49 EELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 4455555555555556666655566667888999999998887742 2333444442 23445556666666665555
Q ss_pred HHHHHHHHHHH
Q 002628 402 EEIHSYVQLYQ 412 (899)
Q Consensus 402 ~~~~~~~~~~~ 412 (899)
..+-..-..|.
T Consensus 129 ~k~eel~~k~~ 139 (143)
T PF12718_consen 129 EKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 167
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.57 E-value=2.4 Score=52.88 Aligned_cols=218 Identities=22% Similarity=0.329 Sum_probs=125.5
Q ss_pred HhhhhhhHHHhhhhchhhhh--hhhhhhhhhHhhhHH----HHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCc
Q 002628 170 ALQGEINALEMRLAETDARI--RVAAQEKIHVELLED----QLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNS 243 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (899)
.+++++..|+.+|-+..... -.+++++..+|+-+- ++--|-+|||....+
T Consensus 273 kim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERae------------------------ 328 (1243)
T KOG0971|consen 273 KIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAE------------------------ 328 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------------------
Confidence 34455555665554432222 234555555554321 234566777775443
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh-----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 002628 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK-----DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 318 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (899)
+|-.|+..++|-+-.|--|++-||++..+-- -..-....||..-..|..+|-.|---.+...-|.-|+..
T Consensus 329 ---sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k-- 403 (1243)
T KOG0971|consen 329 ---SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK-- 403 (1243)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH--
Confidence 8899999999999999999999999876531 112234567777777777766555444444444444321
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 002628 319 VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (899)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (899)
|-...--.++.|...-++...+.|+|-+.+ -||+.+||- +.=+|+-|.-+.+-|+ -|.+|||+|||-+.
T Consensus 404 -elE~k~sE~~eL~r~kE~Lsr~~d~aEs~i---adlkEQVDA--AlGAE~MV~qLtdknl-----nlEekVklLeetv~ 472 (1243)
T KOG0971|consen 404 -ELEKKNSELEELRRQKERLSRELDQAESTI---ADLKEQVDA--ALGAEEMVEQLTDKNL-----NLEEKVKLLEETVG 472 (1243)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--hhcHHHHHHHHHhhcc-----CHHHHHHHHHHHHH
Confidence 111122223333333333333445543333 367778873 2224666666666555 78899999998765
Q ss_pred c--chHHHHHHHHHHHHH-HHHHHHHHHhhHh
Q 002628 399 R--SDEEIHSYVQLYQES-VKEFQDTLHSLKE 427 (899)
Q Consensus 399 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 427 (899)
. .-++|+.++.-.+.. ..+...-||.+++
T Consensus 473 dlEalee~~EQL~Esn~ele~DLreEld~~~g 504 (1243)
T KOG0971|consen 473 DLEALEEMNEQLQESNRELELDLREELDMAKG 504 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 335677666555444 5566666666644
No 168
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.49 E-value=10 Score=51.30 Aligned_cols=155 Identities=23% Similarity=0.338 Sum_probs=86.1
Q ss_pred cccccchhHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhh
Q 002628 127 ELSTSQLDNLISMIRNA----EKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELL 202 (899)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
..|..+.++++.|+.-. |-|+ .|+.-+-+-++.++.+..+.+.|+-++.-|+.+|.++++.+-. .
T Consensus 1208 a~s~~e~~~i~~~v~~vNll~EsN~-~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~----------~ 1276 (1822)
T KOG4674|consen 1208 AVSDDEHKEILEKVEEVNLLRESNK-VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQE----------K 1276 (1822)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH----------H
Confidence 34667888888887644 4444 4677777778888888888888888888888888888776643 3
Q ss_pred HHHHHHHHHHhhhcccCcccchhhhcc-CCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhh-h
Q 002628 203 EDQLQKLQHELTHRGVSEHSELDVFAN-QNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA-D 280 (899)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 280 (899)
...+.+|++|...---- .-++-.. .+... .....|..++..|++|=....+-|+.++.++..++++ -
T Consensus 1277 ~ael~~l~~e~~~wK~R---~q~L~~k~k~~d~--------~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k 1345 (1822)
T KOG4674|consen 1277 VAELKKLEEENDRWKQR---NQDLLEKYKDSDK--------NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIK 1345 (1822)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443221000 0000000 01000 0112333344444444444444455555555555432 3
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhh
Q 002628 281 ERVVMLEMERSSLESSLKELESK 303 (899)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~ 303 (899)
+.+-.+..|+..+...+.+++..
T Consensus 1346 ~qld~l~~e~~~lt~~~~ql~~~ 1368 (1822)
T KOG4674|consen 1346 KQLDELNNEKANLTKELEQLEDL 1368 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776654
No 169
>PF15294 Leu_zip: Leucine zipper
Probab=94.42 E-value=4.3 Score=45.07 Aligned_cols=87 Identities=33% Similarity=0.357 Sum_probs=58.4
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 002628 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (899)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (899)
+..--|.+|.+.|++||..||+-+..+..+-.. .=+|++-|++.|++|.. ....+.+-..+..-..+-.
T Consensus 125 g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~----------~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~ 193 (278)
T PF15294_consen 125 GGSELLNKEIDRLQEENEKLKERLKSLEKQATS----------ALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLS 193 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHhhhccccccccccchh
Confidence 444568899999999999999988877654433 34578889999999988 3333333333333334444
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 002628 323 DLYEKVENLQGLLAKATK 340 (899)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ 340 (899)
+|-.+++.+..-+.++.+
T Consensus 194 dLE~k~a~lK~e~ek~~~ 211 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQ 211 (278)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 667777777766666543
No 170
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.23 E-value=7.9 Score=47.99 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=50.3
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc
Q 002628 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (899)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (899)
.||.+||.-|..++..|.|+.-+|.-.. -+.+-+|++|-.-++|+-..+.. +-..+..+
T Consensus 120 ~ekq~lQ~ti~~~q~d~ke~etelE~~~---srlh~le~eLsAk~~eIf~~~~~------------------L~nk~~~l 178 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQDDKKENEIEIENLN---SRLHKLEDELSAKAHDIFMIGED------------------LHDKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhhHHHHHHHHH------------------HhhhhhHH
Confidence 4555666666666555555544333221 12233444555555554443222 22334567
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhh
Q 002628 246 HSFSKELDSLKTENLSLKNDIKVLKAELN 274 (899)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (899)
.++-++|.++-+||..+++.++.+-.++.
T Consensus 179 t~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999888776555443
No 171
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.20 E-value=18 Score=47.81 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=29.6
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 002628 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (899)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (899)
.++..+......+|+++-..|...-.+-..+...-.+.+..+.++.-|....
T Consensus 614 ~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 614 DQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3555666666777777766666665555555555555554444444444433
No 172
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.15 E-value=5.1 Score=48.91 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCCCCCCCcEE-EEEe-cCCC-ccCHHHHHHHHH--HhhccCcEEEEEcCCCcc-----------C-----
Q 002628 790 KESIRKHLGLSSADARKPLV-GCIT-RLVP-QKGVHLIRHAIY--RTLELGGQFILLGSSPVP-----------H----- 848 (899)
Q Consensus 790 K~aLRk~LGLs~~d~~kpLV-gfVG-RL~~-qKGvdlLIeAi~--~Lle~dvqLVIVG~Gp~~-----------~----- 848 (899)
+.++++++|+++ +.++| +..| |-.+ ..-...+++|+. .+. .+.++++....+.. .
T Consensus 400 ~~~~r~~lgl~~---~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ 475 (608)
T PRK01021 400 NLSWKEQLHLPS---DKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSSANPKYDHLILEVLQQEGCLHSH 475 (608)
T ss_pred HHHHHHHcCCCC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEecCchhhHHHHHHHHhhcCCCCeE
Confidence 455788999963 44544 4555 4443 445567788886 443 35778775332210 0
Q ss_pred c--c--HHHHHHhcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 849 I--Q--VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 849 L--q--ke~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
+ . ...++++||+.+..| |.+.+||+-.|+|.
T Consensus 476 ii~~~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~Pm 510 (608)
T PRK01021 476 IVPSQFRYELMRECDCALAKC-----GTIVLETALNQTPT 510 (608)
T ss_pred EecCcchHHHHHhcCeeeecC-----CHHHHHHHHhCCCE
Confidence 0 0 127889999999877 99999999777554
No 173
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.02 E-value=8.7 Score=47.93 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=29.4
Q ss_pred CCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 002628 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (899)
Q Consensus 511 ~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP 553 (899)
+-||+.|+..- +.-|-.+++.+||.+|+..|..|-+|=.
T Consensus 545 ~~kvi~vts~~----~G~GKTt~a~nLA~~lA~~g~rvLlID~ 583 (754)
T TIGR01005 545 EPEVVETQRPR----PVLGKSDIEANAAALIASGGKRALLIDA 583 (754)
T ss_pred CceEEEeecCC----CCCChhHHHHHHHHHHHhCCCeEEEEeC
Confidence 34777777632 2346678889999999999999998843
No 174
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.00 E-value=1.1 Score=51.45 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=58.8
Q ss_pred hHHHHHHHcCCCCCCCCCcEEEEEe-cCCC-ccCHHHHHHHHHHhhc--cCcEEEEEcCCCc-cCc--------------
Q 002628 789 NKESIRKHLGLSSADARKPLVGCIT-RLVP-QKGVHLIRHAIYRTLE--LGGQFILLGSSPV-PHI-------------- 849 (899)
Q Consensus 789 ~K~aLRk~LGLs~~d~~kpLVgfVG-RL~~-qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~-~~L-------------- 849 (899)
++.++|+++|++. ..+.+.+..| |-.. ..-...+.+|+..+.. .+.+|++-=.... +.+
T Consensus 174 ~r~~ar~~l~~~~--~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~ 251 (381)
T COG0763 174 DREAAREKLGIDA--DEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSL 251 (381)
T ss_pred cHHHHHHHhCCCC--CCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceE
Confidence 3667999999984 2444556666 4333 3345566778887764 3788888544332 110
Q ss_pred -----cHHHHHHhcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 850 -----QVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 850 -----qke~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
.+...|++||+.+..| |.+.+|+|-+|.|.
T Consensus 252 ~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~ 286 (381)
T COG0763 252 ILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPM 286 (381)
T ss_pred EecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCE
Confidence 0117899999988876 99999999777654
No 175
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.94 E-value=2.1 Score=48.04 Aligned_cols=136 Identities=22% Similarity=0.327 Sum_probs=73.0
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVE 320 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 320 (899)
+..|-+-+..|.+||..|+.....|+++-..+-+- |+.++..-++ +|+.|..-++.| ..-.-|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---------EqqLv~dcv~----QL~~An~qia~LseELa~k~Ee 228 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---------EQQLVLDCVK----QLSEANQQIASLSEELARKTEE 228 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---------HHHHHHHHHH----HhhhcchhHHHHHHHHHHHHHH
Confidence 45677889999999999999999999887755444 3333222222 233333333322 233445
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccc
Q 002628 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (899)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (899)
|..-.+.|..|.+.+....++.-+. ...|.+|+..+ .++|-+-..|+...--||+|-.-...-|+.+
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~---~~EnEeL~q~L----------~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea 295 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQL---AAENEELQQHL----------QASKESQRQLQAELQELQDKYAECMAMLHEA 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666555544443332 22344443332 2234444444444444555555555555555
Q ss_pred hHHHHH
Q 002628 401 DEEIHS 406 (899)
Q Consensus 401 ~~~~~~ 406 (899)
-+|+..
T Consensus 296 QEElk~ 301 (306)
T PF04849_consen 296 QEELKT 301 (306)
T ss_pred HHHHHH
Confidence 555544
No 176
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.94 E-value=11 Score=50.62 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=38.8
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002628 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (899)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (899)
....++.+.|+.+-+-.+++++.++..+...-+++.. .....+.|...+..+..+-.+
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~----lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSV----AQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCC
Confidence 3456777888877777777777777776655555443 344567777777776666555
No 177
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.86 E-value=22 Score=43.80 Aligned_cols=176 Identities=20% Similarity=0.252 Sum_probs=99.2
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc------
Q 002628 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK------ 313 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 313 (899)
-|..|-.|=..|-.+-.---+-|..|+++..+ ++...+-|-.|+-|-.-|++.|++=|.-=.--|+.|-|
T Consensus 454 ~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 454 IINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444556666665533 45556677777777777777776433322222333322
Q ss_pred -----cccchhhhhhHHHHHHHHHHHHHHHhhhh--hh----------HHHHhhhhHHHHHHHHHHHHHHhhhhhhhhch
Q 002628 314 -----LSTLKVECKDLYEKVENLQGLLAKATKQA--DQ----------AISVLQQNQELRKKVDKLEESLDEANIYKLSS 376 (899)
Q Consensus 314 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (899)
++.++....+|-++...+|+-+|.|.+.- .. --+..||--|||.++.+-|.++.. + -
T Consensus 534 rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aar----r--E 607 (961)
T KOG4673|consen 534 RQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAAR----R--E 607 (961)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--H
Confidence 23344444567778888888877776511 11 123445555666666555554432 2 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 002628 377 EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSL 425 (899)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (899)
+-++-.++.||+++...|-|-+.+-.+.-+--+-...-|+..|.||++-
T Consensus 608 d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~ 656 (961)
T KOG4673|consen 608 DMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKA 656 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhh
Confidence 3455666777777777776666555555444444556688899998873
No 178
>PRK11637 AmiB activator; Provisional
Probab=93.84 E-value=3.3 Score=48.28 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhcc
Q 002628 203 EDQLQKLQHELTHRG 217 (899)
Q Consensus 203 ~~~~~~~~~~~~~~~ 217 (899)
++++.++-..+...|
T Consensus 123 ~~~l~~rlra~Y~~g 137 (428)
T PRK11637 123 ERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHcC
Confidence 334444444444433
No 179
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.79 E-value=0.017 Score=71.17 Aligned_cols=161 Identities=25% Similarity=0.364 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc------chhhh-hccccchhhhhhHHHHHHHHHHH
Q 002628 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI------SQEDV-AKLSTLKVECKDLYEKVENLQGL 334 (899)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 334 (899)
||+....|+.+|.......+.+..++-|+..|+..++..++-+.. +.+|| ..|..++.++-.+-++..+++.-
T Consensus 286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~ 365 (722)
T PF05557_consen 286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSE 365 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333444444444444444445555555555555555554442222 23343 46888899988888888888776
Q ss_pred HHHHhhhhhhHHHHhh-hhHHHHHHHHHHHHHHhhhhhhhhchHH----HHHHHHHHHHHHHHHHHhhccchHH------
Q 002628 335 LAKATKQADQAISVLQ-QNQELRKKVDKLEESLDEANIYKLSSEK----MQQYNELMQQKMKLLEERLQRSDEE------ 403 (899)
Q Consensus 335 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------ 403 (899)
+....+.. .-|+ ....+..++.+++.++....--.-..++ +.+..+.|++.++.++......+..
T Consensus 366 ~~~l~~~~----~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~ 441 (722)
T PF05557_consen 366 LRELEEEI----QELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR 441 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence 65533322 2222 2244566666666665544332222222 2345677888888877665554433
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhH
Q 002628 404 ---IHSYVQLYQESVKEFQDTLHSLK 426 (899)
Q Consensus 404 ---~~~~~~~~~~~~~~~~~~~~~~~ 426 (899)
+-+.++.|.....+....|+.|.
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~ 467 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELE 467 (722)
T ss_dssp --------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777775555555444433
No 180
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.77 E-value=5.5 Score=50.36 Aligned_cols=204 Identities=24% Similarity=0.273 Sum_probs=95.5
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhc----------h-hhhhhhhhhhhh
Q 002628 129 STSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAE----------T-DARIRVAAQEKI 197 (899)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~ 197 (899)
+..+|.+|-.-+.-++++|--.+|-=-+-..+++++-+...+...++..|..-+.- | .+..+.--.-+.
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777777777777776655555555554443333333333322221111 1 111111222233
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 002628 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (899)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (899)
+..-++++.+-+.+||.+.-.++-...+ -+.+-+-+..|..++.+|..+.+|-+- |+..|+.|..--
T Consensus 756 ~l~~~~~~~~~~e~el~sel~sqLt~ee---------~e~l~kLn~eI~~l~~kl~~~~~er~~----~~~rk~~le~~l 822 (1200)
T KOG0964|consen 756 SLHKLESQSNYFESELGSELFSQLTPEE---------LERLSKLNKEINKLSVKLRALREERID----IETRKTALEANL 822 (1200)
T ss_pred HHHHHHHHHHhHHHHHhHHHHhhcCHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4445666666677776654333222211 111123355566777777777766554 333333332211
Q ss_pred --hhhhHHHHHHhh---------hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002628 278 --DADERVVMLEME---------RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (899)
Q Consensus 278 --~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (899)
+-..|+-.|+-| |+.|+..=.+|++-...-++-+++|++|+..-...-...-+++..|++|.+....-
T Consensus 823 ~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~ 901 (1200)
T KOG0964|consen 823 NTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEK 901 (1200)
T ss_pred HHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222 22233333444444444445555666665554444444455555566655554443
No 181
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.69 E-value=1.4 Score=54.19 Aligned_cols=147 Identities=24% Similarity=0.362 Sum_probs=77.2
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhh----------hccchhHH
Q 002628 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----------NLSLKNDI 266 (899)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 266 (899)
+.+-=||++|+|||.|++....+. +.|. +. -|.+.++.||.| -|.||+-+
T Consensus 429 ~~~~~Le~elekLk~eilKAk~s~----------~~~~-------~~---~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL 488 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAKESS----------SKPS-------EL---ALNEMIEKLKKEIDLEYTEAVIAMGLQERL 488 (762)
T ss_pred CCCccHHHHHHHHHHHHHhccccc----------CCCC-------Ch---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444558999999999999863221 1111 00 233445555544 36788888
Q ss_pred HHHHHHhhhhhh--------hhhHHHHHHhhhh----------hHHhhHHHHH--hhhhcchhhhhccccchhhhhh-HH
Q 002628 267 KVLKAELNSVKD--------ADERVVMLEMERS----------SLESSLKELE--SKLSISQEDVAKLSTLKVECKD-LY 325 (899)
Q Consensus 267 ~~~~~~~~~~~~--------~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (899)
..|+.+++..+- .-+.+.+|..|-. .|...+.-|- ++-...-+..++-.+|+.|-+. +-
T Consensus 489 ~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~ 568 (762)
T PLN03229 489 ENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFK 568 (762)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHH
Confidence 888888777654 2233444433321 1222222111 1111112223345556665332 12
Q ss_pred H------HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHH
Q 002628 326 E------KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEES 365 (899)
Q Consensus 326 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (899)
| -.|..+++++...+ +. +...-.-+++|+.||.++..-
T Consensus 569 e~~~~~~~kek~ea~~aev~~-~g-~s~~~~~~~~lkeki~~~~~E 612 (762)
T PLN03229 569 EVMDRPEIKEKMEALKAEVAS-SG-ASSGDELDDDLKEKVEKMKKE 612 (762)
T ss_pred HhcccHHHHHHHHHHHHHHHh-cC-ccccCCCCHHHHHHHHHHHHH
Confidence 2 34456666666666 33 333447788899999888773
No 182
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=2.5 Score=46.56 Aligned_cols=171 Identities=20% Similarity=0.312 Sum_probs=103.3
Q ss_pred ccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHH
Q 002628 128 LSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQ 207 (899)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (899)
++.+.-+.+-.||.|.++=|-=+.+.--.+=.+++.+.+..+++|++++-+..+..++.+.|+- ++.++.
T Consensus 21 ~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~----------l~~eI~ 90 (265)
T COG3883 21 LTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK----------LQKEIA 90 (265)
T ss_pred cchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3444445555669999988888888888888888888888888888888888888877777663 333344
Q ss_pred HHHHHhhhcc-cCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHH
Q 002628 208 KLQHELTHRG-VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (899)
Q Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (899)
.+++-+..|. .-..+.+.++.|......-|.+.... ||+.=++.+-.=|.....|-.-|+..-.+-+..++.-..+
T Consensus 91 ~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~Sk---SfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l 167 (265)
T COG3883 91 ELKENIVERQELLKKRARAMQVNGTATSYIDVILNSK---SFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL 167 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccC---cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333331 11122333444444333333344444 5555555555555555556555555555555556666667
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhh
Q 002628 287 EMERSSLESSLKELESKLSISQEDV 311 (899)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (899)
+++-..|.+-..|+|.++..-+.-.
T Consensus 168 ~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 168 EDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776665443333
No 183
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.52 E-value=23 Score=43.43 Aligned_cols=110 Identities=22% Similarity=0.316 Sum_probs=82.8
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
+|.+|+..||+.+..-..+. +.++.++++..+.+..++.|...-+...+.|+..+.....|+.-- .
T Consensus 423 pL~~e~r~lk~~~~~~~~e~---~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs-----------~ 488 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESES---KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS-----------A 488 (594)
T ss_pred HHHHHHHHHHHHHhhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH-----------H
Confidence 77899999998887665554 446777888888888888888888888888888888877775421 1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 002628 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (899)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (899)
-+..+-.......||-+.--.||.....||+.+..+...|.+.-
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF 532 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTF 532 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 12233334444556777777899999999999999999998753
No 184
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.43 E-value=8.8 Score=46.45 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=9.1
Q ss_pred hchHHHHHHHHHHHHHHHHH
Q 002628 374 LSSEKMQQYNELMQQKMKLL 393 (899)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~ 393 (899)
.+.+.+.+|-+.+++++..+
T Consensus 322 ~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 322 ASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 185
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.32 E-value=15 Score=45.10 Aligned_cols=219 Identities=21% Similarity=0.324 Sum_probs=98.1
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH-------HhhHHHHHhhhhcchhhhhccc-
Q 002628 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL-------ESSLKELESKLSISQEDVAKLS- 315 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~- 315 (899)
.|..+.+|-|.||.|--+||+.+..---. ++.++-||-|..|-.|-..| ..-++.|-.|...+..=+.|++
T Consensus 417 Kvqa~~kERDalr~e~kslk~ela~~l~~-DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge 495 (961)
T KOG4673|consen 417 KVQALTKERDALRREQKSLKKELAAALLK-DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGE 495 (961)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 34556677777777766666655431111 46778888887665443322 2223333333332222222221
Q ss_pred -------------cc---hhh-hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh-------hhh
Q 002628 316 -------------TL---KVE-CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE-------ANI 371 (899)
Q Consensus 316 -------------~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 371 (899)
.. |-| -|.+.|-|+.+++.+.+ |-+-..-.=..-.+|+.+.-.+++++.+ +|.
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r---q~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nr 572 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR---QKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENR 572 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence 11 111 12345666677776655 2222211111112333333333333333 333
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHH
Q 002628 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLL 451 (899)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll 451 (899)
-| -+..++-..-+-|+|.-|-.-|+...+..---=+-+.+.|.+.|.-|. ..+.+ .++..+.+| +-..-||.
T Consensus 573 lk--Qdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlq----aaE~R-~eel~q~v~-~TTrPLlR 644 (961)
T KOG4673|consen 573 LK--QDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQ----AAERR-CEELIQQVP-ETTRPLLR 644 (961)
T ss_pred hh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHhhcc-ccccHHHH
Confidence 33 112222223333444444444444333322222333455555555544 23333 455566665 33345777
Q ss_pred HhhhhhhhcccChHHHHHHHHHHHhc-CCCch
Q 002628 452 IIDGWLLEKKLSTSEAKLLREMVWKR-NGRIR 482 (899)
Q Consensus 452 ~~d~~~~~~~~~~~~a~~l~~~~~~~-~~~~~ 482 (899)
-|..|. ++-.=+...|+| ..++.
T Consensus 645 QIE~lQ--------~tl~~~~tawereE~~l~ 668 (961)
T KOG4673|consen 645 QIEALQ--------ETLSKAATAWEREERSLN 668 (961)
T ss_pred HHHHHH--------HHHhhhhhHHHHHHHHHH
Confidence 788884 333345557888 33333
No 186
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.30 E-value=0.024 Score=69.96 Aligned_cols=157 Identities=28% Similarity=0.364 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHH----h-hhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc-------
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAE----L-NSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL------- 314 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 314 (899)
.+.+.+..|..||-.||..++..+.+ | ....+.......|+.+.......+.+|++++..-|..+...
T Consensus 456 ~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~d~ 535 (713)
T PF05622_consen 456 ELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSEDS 535 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccH
Confidence 34566677888888887655443211 1 11112223334455555554445555544444333222111
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhc-hHHHHHHHHHHHHHHHHH
Q 002628 315 STLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLS-SEKMQQYNELMQQKMKLL 393 (899)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 393 (899)
..++.+...-.+++..++.-+.+...+.+.. -...++.+..||++|++.|..-...-.. -++...|.+-.+.-++.|
T Consensus 536 ~~lk~~le~~~~~l~e~~~e~~~~~~~le~l--~~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k~~lekak~vi~~L 613 (713)
T PF05622_consen 536 SELKQKLEEHLEKLRELKDELQKKREQLEEL--EQELNQSLSQKIEELEEALQKKEEEMRAMEERYKKYLEKAKEVIKTL 613 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 1222221111122222222222222222211 1112333455566666555543321111 123444555555556666
Q ss_pred HHhhccchHHHH
Q 002628 394 EERLQRSDEEIH 405 (899)
Q Consensus 394 ~~~~~~~~~~~~ 405 (899)
+.+.+++..||.
T Consensus 614 d~k~~~~~~e~~ 625 (713)
T PF05622_consen 614 DPKQNPSSPEIQ 625 (713)
T ss_dssp ------------
T ss_pred ChhccCChHHHH
Confidence 666666555554
No 187
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.26 E-value=8 Score=46.91 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=63.1
Q ss_pred ccccccccCCCccccccchhHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhh
Q 002628 115 KESLVLNCDGGEELSTSQLDNLISMIRNAEKNILLLNEARV-QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAA 193 (899)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (899)
.+...-|...-+.|.+.++.++-.++-.||..+--.|=.+. +++.+++..+.+- ..+|+.+...|.+- +....
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~---e~~i~~i~~~l~~L---~~~e~ 132 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEI---EEDIKEILDELDEL---LESEE 132 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHH
Confidence 33344566666778889999999999999998766554433 3444454444433 33444444444333 23344
Q ss_pred hhhhhHhhhHHHHHHHHHHhhhcccCcc
Q 002628 194 QEKIHVELLEDQLQKLQHELTHRGVSEH 221 (899)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (899)
+-+..++-+.+....+|+.|...+.+=|
T Consensus 133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G 160 (560)
T PF06160_consen 133 KNREEIEELKEKYRELRKELLAHSFSYG 160 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4556667788888888888887655533
No 188
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.24 E-value=12 Score=47.95 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=42.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 002628 140 IRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (899)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (899)
+++...|....-+.+-+|-+.++-...++.-++.+|...+-++... -+++.+.++++.|..+++=.-|.
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~-----------~~~e~~~~~l~~Lk~k~~W~~V~ 277 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL-----------EQLEDLKENLEQLKAKMAWAWVN 277 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555544444322 23778889999999998875444
No 189
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.23 E-value=27 Score=44.86 Aligned_cols=103 Identities=26% Similarity=0.405 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 002628 265 DIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQ 344 (899)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (899)
.+..++..+..+..-.+++....+|...+...+...-..+...++...+++.+...+..+-++.+.|+..+..+.....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 354 (908)
T COG0419 275 ELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNE 354 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444555555555555666666666665555444444
Q ss_pred HHHHhhhhHH-HHHHHHHHHHHHh
Q 002628 345 AISVLQQNQE-LRKKVDKLEESLD 367 (899)
Q Consensus 345 ~~~~~~~~~~-~~~~~~~~~~~~~ 367 (899)
....++.... ++.+.+.++..+.
T Consensus 355 ~~~~~~~~~~~l~~~~~~l~~~~~ 378 (908)
T COG0419 355 LAKLLEERLKELEERLEELEKELE 378 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333 4445555555544
No 190
>PRK09039 hypothetical protein; Validated
Probab=93.19 E-value=1.3 Score=50.51 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=25.9
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHH
Q 002628 248 FSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLK 298 (899)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (899)
|++-|..=+..+..|...+..++.++. .++.+|+.|++.+.
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~----------~a~~~r~~Le~~~~ 105 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLS----------AAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 455555556666667777777776665 56666666666554
No 191
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.10 E-value=17 Score=44.28 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=11.6
Q ss_pred HHhhccchHHHHHHHHH
Q 002628 394 EERLQRSDEEIHSYVQL 410 (899)
Q Consensus 394 ~~~~~~~~~~~~~~~~~ 410 (899)
..||+..+++|+..++.
T Consensus 509 ~nRfr~~~~~V~~~f~~ 525 (569)
T PRK04778 509 ANRYRSDNEEVAEALNE 525 (569)
T ss_pred HhccCCCCHHHHHHHHH
Confidence 46777777777776654
No 192
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.97 E-value=4.1 Score=49.84 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=105.8
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 002628 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (899)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (899)
..+|-+=|.-|-+++.++...=..-.+.+|++.+|+.+-..+.++|.+.-.++.-.-+---.|+ -+++ |-|
T Consensus 134 ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rls-dtvd--------Erl 204 (916)
T KOG0249|consen 134 AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLS-DTVD--------ERL 204 (916)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-cccH--------HHH
Confidence 4456666778889998888877788899999999998888888888776655543332222121 1221 223
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002628 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (899)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (899)
|.-+. .--+ .|+.-..|-..++.++.-|++++-.| ++++-.++.|++.+++|+.+...-..+++..+..|
T Consensus 205 qlhlk----erma---Ale~kn~L~~e~~s~kk~l~~~~~~k---~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~ 274 (916)
T KOG0249|consen 205 QLHLK----ERMA---ALEDKNRLEQELESVKKQLEEMRHDK---DKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTY 274 (916)
T ss_pred HHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhh
Confidence 32222 2222 24455556666677777777766544 67888999999999999988888888899999999
Q ss_pred HHHHHHHHHHH
Q 002628 412 QESVKEFQDTL 422 (899)
Q Consensus 412 ~~~~~~~~~~~ 422 (899)
++-+.+-+.++
T Consensus 275 ~e~~~~~~~~~ 285 (916)
T KOG0249|consen 275 AERRRETETTN 285 (916)
T ss_pred HHHHHhhcchh
Confidence 99988877764
No 193
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.85 E-value=7.2 Score=52.35 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCC
Q 002628 152 EARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQN 231 (899)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (899)
+-|..-+|++-++..+|+....++..-+.+|.+.+..+ .+-.-..+-|+.|.++.+..+............
T Consensus 279 eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL---~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~e------ 349 (1486)
T PRK04863 279 NERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL---AELNEAESDLEQDYQAASDHLNLVQTALRQQEK------ 349 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34566667777777777777777777777777776554 232333445666666666554443210000000
Q ss_pred CCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 002628 232 EPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDV 311 (899)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (899)
.-.....+..+..++....++-..+++.+..+..+ +...++.+..+.++++.+...+..++.++...+..+
T Consensus 350 ------i~~l~~~LeELee~Lee~eeeLeeleeeleeleeE---leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i 420 (1486)
T PRK04863 350 ------IERYQADLEELEERLEEQNEVVEEADEQQEENEAR---AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV 420 (1486)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111122222222222222222223222222 223445555666666666666666666666666666
Q ss_pred hccccchhhh
Q 002628 312 AKLSTLKVEC 321 (899)
Q Consensus 312 ~~~~~~~~~~ 321 (899)
..+..-+.=|
T Consensus 421 ~~Le~~~~~~ 430 (1486)
T PRK04863 421 QALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHh
Confidence 6666555555
No 194
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.79 E-value=25 Score=44.92 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=57.3
Q ss_pred cchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh----hhHHHHhhhhHHHHHHHHHHHHHHhhh------hhhhhc
Q 002628 306 ISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA----DQAISVLQQNQELRKKVDKLEESLDEA------NIYKLS 375 (899)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 375 (899)
...+-++|...|+-|-|.|--|+|-|+.=+...++|- |-+-...-.+..|++.++-...++.+- .--.++
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls 474 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLS 474 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 5556677888887777777777777765554433321 222223334445555555555555443 111111
Q ss_pred hH--HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002628 376 SE--KMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (899)
Q Consensus 376 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (899)
.. -.++++++. +++|-+-.+++.++-++.+......
T Consensus 475 ~~~Q~~~et~el~-~~iknlnk~L~~r~~elsrl~a~~~ 512 (1195)
T KOG4643|consen 475 LQDQLEAETEELL-NQIKNLNKSLNNRDLELSRLHALKN 512 (1195)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 123344443 3477888888888877766544433
No 195
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.74 E-value=1.8 Score=50.63 Aligned_cols=102 Identities=24% Similarity=0.231 Sum_probs=78.5
Q ss_pred cCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 002628 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (899)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (899)
.+...+|-+..+.+.||++|.-|-+-|+.....=...+.++|+-..|...---++++.+.|++|. |+-.-+++.|+.
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~---~~~~g~l~kl~~ 337 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS---QEWPGKLEKLKS 337 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence 44556778888888999999888888887777667778888888888877778889999998874 555667777888
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhh
Q 002628 320 ECKDLYEKVENLQGLLAKATKQADQ 344 (899)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (899)
||.---+.++.||+-.|...+|..+
T Consensus 338 eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 338 EIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 8876677777777777776666654
No 196
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.68 E-value=21 Score=46.70 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh
Q 002628 277 KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE 320 (899)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (899)
.-++.+...|+-|++.+++.+..+|..+..+ ..-.+|..++.|
T Consensus 169 ~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~-~~~~~L~~~q~d 211 (1109)
T PRK10929 169 PLAQAQLTALQAESAALKALVDELELAQLSA-NNRQELARLRSE 211 (1109)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHH
Confidence 3456677889999999999999999888744 344455555554
No 197
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.61 E-value=0.034 Score=68.59 Aligned_cols=182 Identities=20% Similarity=0.376 Sum_probs=0.0
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKD 323 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (899)
.|.+..++..|.+|+..|......++..++... ...+....+.++.+.|.+.++.|...+....+ .+..++.+|..
T Consensus 195 ~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~---~~~d~~~~~e~ 271 (713)
T PF05622_consen 195 CHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEE---QRDDLKIELEE 271 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 345666677777777777777777777766544 22223333445555555555555554432111 11112222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhh----------HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 002628 324 LYEKVENLQGLLAKATKQADQAISVLQQN----------QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 393 (899)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (899)
+-..+..|+.-.+..+..|+.|-..=++- .-|...|.+.+.-|++..-||-.-..|+.-|..+.++...|
T Consensus 272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L 351 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML 351 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222222 22333444445556677777777777777887888888889
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 002628 394 EERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESK 430 (899)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (899)
|+.+..+. ...+++..|...|.+.+.-++......+
T Consensus 352 Eeel~~~~-~~~~qle~~k~qi~eLe~~l~~~~~~~~ 387 (713)
T PF05622_consen 352 EEELKKAR-ALKSQLEEYKKQIQELEQKLSEESRRAD 387 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998875 4678899999999988887776544433
No 198
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.41 E-value=13 Score=40.06 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002628 353 QELRKKVDKLEESLDEA 369 (899)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ 369 (899)
..+..++..|++-|.+|
T Consensus 172 ~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555555
No 199
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.15 E-value=1.1 Score=55.78 Aligned_cols=63 Identities=32% Similarity=0.450 Sum_probs=21.9
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh-----------hhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD-----------ADERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
.+..+..++...+.-+..+-..++.++.....-.. -...+..|++|...|+..+..||.++..
T Consensus 462 ~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 462 QLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp --------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777666777777777777654322 2346777888888888888888888764
No 200
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.05 E-value=33 Score=44.25 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccccc
Q 002628 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (899)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (899)
.++++-..|-+..+++|+-|||||+-..-.++ +.- -+++.++-+++...+++..-+ |-
T Consensus 669 ~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~--~~k-~~l~~~~~El~~~~~~i~~~~---------------p~---- 726 (1141)
T KOG0018|consen 669 KEIQKRRKEVSSVESKIHGLEMRLKYSKLDLE--QLK-RSLEQNELELQRTESEIDEFG---------------PE---- 726 (1141)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHhhC---------------ch----
Confidence 34444445677889999999999986644333 332 666777777777766665221 11
Q ss_pred ccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh----------------hhhH--HHHHHhhhhhHHhhHHHH
Q 002628 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD----------------ADER--VVMLEMERSSLESSLKEL 300 (899)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~--~~~~~~~~~~~~~~~~~~ 300 (899)
+..+-.+++.. ...+..|+.+.+.|.+ -+|+ -....++|..++..+.-|
T Consensus 727 ------i~~i~r~l~~~-------e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l 793 (1141)
T KOG0018|consen 727 ------ISEIKRKLQNR-------EGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKL 793 (1141)
T ss_pred ------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223333333 3334444444443322 2222 233445666677777777
Q ss_pred HhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHH
Q 002628 301 ESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQ 380 (899)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (899)
|.+|.--+. +..+-...-|-..|++++.-+++..++.+-+...+... +.|+.-+ |--+++++
T Consensus 794 ~~~l~fe~~-----~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-----------~~~e~k~--k~~~~~~~ 855 (1141)
T KOG0018|consen 794 ENQLDFEKQ-----KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-----------EELEKKN--KSKFEKKE 855 (1141)
T ss_pred hhhhhheec-----ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-----------HHHHHHH--HHHHHHHH
Confidence 777765443 44444444777889999998888777666665554444 3333311 33333333
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002628 381 QYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (899)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (899)
..-.-....+..+-..++.-+.+|.+.=..-..-..|-|+.|.+
T Consensus 856 ~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ 899 (1141)
T KOG0018|consen 856 DEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSK 899 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33333344444555555666666665333333333444555555
No 201
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.00 E-value=4.8 Score=48.30 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=83.3
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHh-------hHHHHHhhhhcchhhhhcccc
Q 002628 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLES-------SLKELESKLSISQEDVAKLST 316 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 316 (899)
..|+...+++.|++.|..|-+-|+ ++...+.++..|++.++.|.. .+..|+++ .|.=--+|.-
T Consensus 229 ~~~~i~~~ie~l~~~n~~l~e~i~-------e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k---~~~~~~~l~~ 298 (581)
T KOG0995|consen 229 YFTSIANEIEDLKKTNRELEEMIN-------EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK---KQHMEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh---hHHHHHHHHH
Confidence 345556666666666665544444 555556666666666665443 33333333 2333345555
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHH
Q 002628 317 LKVECKDLYEKVENLQGLLAKATKQADQ----AISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (899)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (899)
++.||..-=+..|.||..-+...+|.+. +.-|=+.|++.. +|+.-| .+|+.--|.+++++..
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~----~l~r~l----------~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERN----KLKREL----------NKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHh
Confidence 6666666666666666665555555542 222222333221 122222 2333344567777777
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 002628 393 LEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (899)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (899)
++.-.+..-+++.+.+..|.+.+.+-.-.
T Consensus 365 ~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 365 LKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766655544
No 202
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.96 E-value=19 Score=46.07 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=57.1
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 002628 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (899)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (899)
..+..|+..++++..|++...-++...+.-|. ...+-+.++++.-+.++.+|++=|+.+...+++..++..-..+--
T Consensus 294 ~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~---~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s 370 (1174)
T KOG0933|consen 294 GEVKALEDKLDSLQNEITREETSLNLKKETLN---GEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDS 370 (1174)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 33458899999999999988888887777665 345556677777777777777777777776666666554444333
Q ss_pred hHHHHHH
Q 002628 323 DLYEKVE 329 (899)
Q Consensus 323 ~~~~~~~ 329 (899)
.++++.+
T Consensus 371 ~~~e~~e 377 (1174)
T KOG0933|consen 371 KLLEKAE 377 (1174)
T ss_pred HHHHHHH
Confidence 4444443
No 203
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=91.93 E-value=3.5 Score=47.55 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=56.1
Q ss_pred HHHHHHcCCCCCCCCCcEE-EEEe-cCCC-ccCHHHHHHHHHHhhcc--CcEEEEEcCCCcc-C-cc-------------
Q 002628 791 ESIRKHLGLSSADARKPLV-GCIT-RLVP-QKGVHLIRHAIYRTLEL--GGQFILLGSSPVP-H-IQ------------- 850 (899)
Q Consensus 791 ~aLRk~LGLs~~d~~kpLV-gfVG-RL~~-qKGvdlLIeAi~~Lle~--dvqLVIVG~Gp~~-~-Lq------------- 850 (899)
...++.+ ++. +.++| +..| |-.. ..-+..+++|+..+.+. +++|++....... . +.
T Consensus 173 ~~~~~~~-l~~---~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~ 248 (373)
T PF02684_consen 173 AEAREKL-LDP---DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIV 248 (373)
T ss_pred HHHHHhc-CCC---CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEE
Confidence 4456666 663 55654 4455 5544 44457788999888763 7888887654321 1 10
Q ss_pred -----HHHHHHhcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 851 -----VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 851 -----ke~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
...+|++||+.++.| |.+.+||+-.|+|.
T Consensus 249 ~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~ 282 (373)
T PF02684_consen 249 IIEGESYDAMAAADAALAAS-----GTATLEAALLGVPM 282 (373)
T ss_pred EcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCE
Confidence 118999999999987 99999999777554
No 204
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.66 E-value=6.8 Score=44.59 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCC
Q 002628 406 SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDM 441 (899)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (899)
..+...+..+.+.+..++.+...-+++..-.|+++.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~ 281 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRLQRLIIRSPVDGT 281 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcE
Confidence 334445555666666666666666665555555554
No 205
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=45 Score=41.58 Aligned_cols=273 Identities=21% Similarity=0.223 Sum_probs=165.5
Q ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHH
Q 002628 135 NLISMIRN-AEKNILLLNEARVQALEDLHKILQEKEALQGEINAL--EMRLAETDARIRVAAQEKIHVELLEDQLQKLQH 211 (899)
Q Consensus 135 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (899)
+++++.++ +++=..++.+.+..--. -..|+..|.+++...+.+ .++++.-+.+.++-...+.-++-+..++.++-.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~e~~k-~~di~~~k~el~~~~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k 414 (698)
T KOG0978|consen 336 KLRSKLLESAKKLKILLREKDRESQK-ERDILVAKSELLKTNELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDK 414 (698)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhh-hHhHHHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788777 66666666655555433 345667777777653322 233444445554443333333334444443322
Q ss_pred HhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHH-----------hhhhhhhh
Q 002628 212 ELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAE-----------LNSVKDAD 280 (899)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 280 (899)
+-... ..--.+ .+....-..+-+++++|..+-+++.-|-..++...++ +.++.+-|
T Consensus 415 ~e~~e-------~~k~~~------d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekd 481 (698)
T KOG0978|consen 415 EERSE-------IRKQAL------DDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKD 481 (698)
T ss_pred HHHHH-------HHhhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 000000 0000111233455666666555555443333333332 23456667
Q ss_pred hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH
Q 002628 281 ERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD 360 (899)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (899)
..-++|-.||.......+.|.....+..+.+..+.+-.. .+-.++-+|+..+...|..+..-+ .++....+
T Consensus 482 d~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~---~~~~~i~~leeq~~~lt~~~~~l~------~el~~~~~ 552 (698)
T KOG0978|consen 482 DKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVD---KLELKIGKLEEQERGLTSNESKLI------KELTTLTQ 552 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHhhhhhH------HHHHHHHH
Confidence 777888888888889999999999888888887766443 577888889998888887765443 45666777
Q ss_pred HHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHH--HH-HHHHHHHHHHHHHHHhhHhhhh
Q 002628 361 KLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS--YV-QLYQESVKEFQDTLHSLKEESK 430 (899)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 430 (899)
++|..=..+.=++-+.+.+|...+..+.+++.++..++.+..++-- +- +.-++.++.+...|..++.++.
T Consensus 553 ~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 553 SLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7888778888888899999999999999999999999887766543 22 2223445666665555554443
No 206
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=91.42 E-value=5.7 Score=45.92 Aligned_cols=27 Identities=15% Similarity=-0.118 Sum_probs=22.8
Q ss_pred HHHHhcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 853 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 853 ~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
.+|++||++|..| |-+..|++++|.|+
T Consensus 292 ~~l~~ADlvI~rS-----Gt~T~E~a~lg~P~ 318 (396)
T TIGR03492 292 EILHWADLGIAMA-----GTATEQAVGLGKPV 318 (396)
T ss_pred HHHHhCCEEEECc-----CHHHHHHHHhCCCE
Confidence 7899999999996 55669999888766
No 207
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.37 E-value=9.3 Score=49.00 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=70.2
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (899)
...++.|..|++..-.+|+...+.+...++.-|.+...-.|--. .-++.--..|.-..+|.+++-|-+.--+|+
T Consensus 733 ~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~------~~~~~~~~l~~e~~~l~~l~~el~~r~dk~ 806 (1074)
T KOG0250|consen 733 ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEE------YYAAGREKLQGEISKLDALKEELKLREDKL 806 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45577777888887778877777776666655544322211111 111112233444445555555433223333
Q ss_pred HHHHHHHHHHhhhhhhHHH--HhhhhHHHHHHHHHHHHHHhhhh----hhhh-----------chHHHHHHHHHHHHHHH
Q 002628 329 ENLQGLLAKATKQADQAIS--VLQQNQELRKKVDKLEESLDEAN----IYKL-----------SSEKMQQYNELMQQKMK 391 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~~~~~~~~~~~~~~~~~ 391 (899)
.+-.+.. .-.++++ +|+.-...+.++..++..+.+.. ..-- +.+.|...+..|+.+++
T Consensus 807 ~s~e~~~-----~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~ 881 (1074)
T KOG0250|consen 807 RSAEDEK-----RHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQ 881 (1074)
T ss_pred hhhhhhh-----hhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHH
Confidence 2211110 0111111 23333333444555555544432 1111 12556666666777777
Q ss_pred HHHHhhccchHHHHHHHHH
Q 002628 392 LLEERLQRSDEEIHSYVQL 410 (899)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~ 410 (899)
..|+.+..+-+....+...
T Consensus 882 ~~ee~~~~~~e~~~~~~~~ 900 (1074)
T KOG0250|consen 882 MCEESLGELEELHRGLHEA 900 (1074)
T ss_pred HHHHhcchHHHHHHHHHHH
Confidence 7776666665555444333
No 208
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.24 E-value=23 Score=42.82 Aligned_cols=174 Identities=29% Similarity=0.308 Sum_probs=111.6
Q ss_pred HHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcc
Q 002628 165 LQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (899)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (899)
+.||++|| -|--|||--= -+|--||.|=-+|.++|--.....+.+.. +. ...++..
T Consensus 38 ~rEK~El~----~LNDRLA~YI----------ekVR~LEaqN~~L~~di~~lr~~~~~~ts-----~i-----k~~ye~E 93 (546)
T KOG0977|consen 38 EREKKELQ----ELNDRLAVYI----------EKVRFLEAQNRKLEHDINLLRGVVGRETS-----GI-----KAKYEAE 93 (546)
T ss_pred HHHHHHHH----HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhccCCCc-----ch-----hHHhhhh
Confidence 45776665 3556665431 24557788877777776554333222211 00 0022333
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----ccchhh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL----STLKVE 320 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 320 (899)
+-.....++....+-..+..+|..|+.++.+. ..++...+|+|..-+..+++.+..+...++-..-+ ..+..|
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el---r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKEL---RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 33445556666667777888888888776554 45666777788887777777777777776655433 345566
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 002628 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (899)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (899)
-+.|-.....|..-|+.+.++.|++++. -.|++.+|+.|.+.|+-
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~ld~Etll---r~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQLDDETLL---RVDLQNRVQTLLEELAF 215 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Confidence 6677778888888999999999998543 35788888888887753
No 209
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.17 E-value=26 Score=39.34 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=36.1
Q ss_pred HHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhc
Q 002628 364 ESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKR 432 (899)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (899)
.....-+-...+.-.+|..|-+|+|++. +-....+..=... -..=..|++++.+|..+++|.
T Consensus 211 k~~~Kqes~eERL~QlqsEN~LLrQQLd---dA~~K~~~kek~V----iniQ~~f~d~~~~L~ae~ekq 272 (305)
T PF14915_consen 211 KYIGKQESLEERLSQLQSENMLLRQQLD---DAHNKADNKEKTV----INIQDQFQDIVKKLQAESEKQ 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455667788888888754 3333333211111 111245999999999999995
No 210
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=90.90 E-value=26 Score=41.10 Aligned_cols=141 Identities=14% Similarity=0.009 Sum_probs=88.8
Q ss_pred hhhHHhhhccEEEEeChhhHHhhccccccccccCCCcEEEEec-CccCCCCCCCcchhhhhhcccccccchhhhHHHHHH
Q 002628 717 PLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILN-GIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRK 795 (899)
Q Consensus 717 ~lK~ai~~AD~VItVS~sya~e~g~GL~~iL~~~~~KI~VIpN-GID~e~f~P~~d~~L~~~ysaddl~GK~~~K~aLRk 795 (899)
+.+..+...|.|++=|+..++.+- .|+..+ +.+.=| =.|++ |. +. -.....++|+
T Consensus 170 ~~~~~~~~i~li~aQse~D~~Rf~-----~LGa~~--v~v~GNlKfd~~---~~--~~------------~~~~~~~~r~ 225 (419)
T COG1519 170 LARLLFKNIDLILAQSEEDAQRFR-----SLGAKP--VVVTGNLKFDIE---PP--PQ------------LAAELAALRR 225 (419)
T ss_pred HHHHHHHhcceeeecCHHHHHHHH-----hcCCcc--eEEecceeecCC---CC--hh------------hHHHHHHHHH
Confidence 456667788999999988777621 122222 322222 11211 11 00 0123567888
Q ss_pred HcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhcc--CcEEEEEcCCCcc--Ccc---H-----------------
Q 002628 796 HLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLEL--GGQFILLGSSPVP--HIQ---V----------------- 851 (899)
Q Consensus 796 ~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~--dvqLVIVG~Gp~~--~Lq---k----------------- 851 (899)
+++.+ +|++++.+. ...--+.+++++..+.++ +..+++|=.-|++ .++ +
T Consensus 226 ~l~~~-----r~v~iaaST--H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~ 298 (419)
T COG1519 226 QLGGH-----RPVWVAAST--HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFS 298 (419)
T ss_pred hcCCC-----CceEEEecC--CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCC
Confidence 88753 578888887 334455688899888764 6777777654443 110 0
Q ss_pred -------------HHHHHhcCeeEEc-CCcCcChHHHHHHccCCcccccCC
Q 002628 852 -------------YPILLSSFSFLRK-HIFNICNLYIKLGQGGDLTVNNNC 888 (899)
Q Consensus 852 -------------e~iyaaADIfVlP-S~~EpFGLV~LEAMg~gl~Vidgv 888 (899)
..+|+.||+.++- |..+--|=-.+|+.++++||+.|-
T Consensus 299 ~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp 349 (419)
T COG1519 299 DTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGP 349 (419)
T ss_pred CCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCC
Confidence 0999999997775 666666788999999999999874
No 211
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.80 E-value=14 Score=43.96 Aligned_cols=157 Identities=25% Similarity=0.271 Sum_probs=99.4
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHH----Hhh---hhcchhhhhcccc-
Q 002628 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKEL----ESK---LSISQEDVAKLST- 316 (899)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~- 316 (899)
-+|-+-|..+++||+.|+...--+|++-.-+.+-+..++ +++||-.-++..++-+ ++| ++.-|+..+||-.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999998877777777777 7788776655554433 444 5566777766544
Q ss_pred ---chhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh----------hhhhchHHHHHHH
Q 002628 317 ---LKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN----------IYKLSSEKMQQYN 383 (899)
Q Consensus 317 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 383 (899)
++-+-+.+--.+|.|..+|.-+...-++ .-....++++|--.+.+-|.||- .-+.+++..+.+-
T Consensus 242 l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q---l~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ---LTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 3434344444445555555433322222 23466788888888777777763 2244444444443
Q ss_pred ------HHHHHHHHHHHHhhccchHHHH
Q 002628 384 ------ELMQQKMKLLEERLQRSDEEIH 405 (899)
Q Consensus 384 ------~~~~~~~~~~~~~~~~~~~~~~ 405 (899)
.+.+||+.+.+..=..-|+++-
T Consensus 319 ~~fp~~~~aae~i~lt~r~~~qldee~s 346 (596)
T KOG4360|consen 319 HHFPQLSLAAEKIELTMRKNLQLDEEAS 346 (596)
T ss_pred hhCChhhHHHHHHHHhhhhhhccccccc
Confidence 5677788877766555555543
No 212
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.77 E-value=7.6 Score=40.95 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=86.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
.|-..+..+-+.|.-|.++|+.|+.++-...-.-++-..++.|-..|...++.||..-....+-- .-++-|-..|-.
T Consensus 26 kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~---rqlEkE~q~L~~ 102 (193)
T PF14662_consen 26 KLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQA---RQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45566777778888888888888888888888888888888898889999988887654433322 233344445556
Q ss_pred HHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHHHHHHHHHHHHh-----------hhhhhhhchHHHHHHHHHHHH
Q 002628 327 KVENLQGLLAK-------ATKQADQAISVLQQNQELRKKVDKLEESLD-----------EANIYKLSSEKMQQYNELMQQ 388 (899)
Q Consensus 327 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 388 (899)
++++||.--.+ ..++..+ .-..+.+|+.+|-.-|..+- ...-++...+......+.|+.
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~e---L~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~ 179 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKE---LATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRL 179 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666543333 2222222 22466777777733332221 111222333344445555566
Q ss_pred HHHHHHHhh
Q 002628 389 KMKLLEERL 397 (899)
Q Consensus 389 ~~~~~~~~~ 397 (899)
++-.||+.+
T Consensus 180 e~s~LEeql 188 (193)
T PF14662_consen 180 EKSRLEEQL 188 (193)
T ss_pred HHHHHHHHH
Confidence 666666554
No 213
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=90.76 E-value=6.4 Score=44.91 Aligned_cols=28 Identities=4% Similarity=-0.116 Sum_probs=21.1
Q ss_pred HHHHhcCeeEEcCCcCcChHHHHHHccCCcccc
Q 002628 853 PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN 885 (899)
Q Consensus 853 ~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vi 885 (899)
.+++.||++|--|- |.. .||.+.|+||+
T Consensus 277 ~Ll~~a~~vitdSS----ggi-~EA~~lg~Pvv 304 (365)
T TIGR03568 277 SLLKNADAVIGNSS----SGI-IEAPSFGVPTI 304 (365)
T ss_pred HHHHhCCEEEEcCh----hHH-HhhhhcCCCEE
Confidence 78888888885442 333 89999999986
No 214
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=90.75 E-value=28 Score=43.58 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=30.0
Q ss_pred CCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 002628 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (899)
Q Consensus 511 ~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVIt 552 (899)
+-||+.|+... ..-|-..++.+||.+|+..|..|-+|=
T Consensus 530 ~~kvI~vtS~~----~g~GKTtva~nLA~~la~~G~rVLlID 567 (726)
T PRK09841 530 ENNILMITGAT----PDSGKTFVSSTLAAVIAQSDQKVLFID 567 (726)
T ss_pred CCeEEEEecCC----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45788887743 234777889999999999999999884
No 215
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.75 E-value=24 Score=47.27 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=5.6
Q ss_pred CcEEEEEcC
Q 002628 835 GGQFILLGS 843 (899)
Q Consensus 835 dvqLVIVG~ 843 (899)
+.+++|+..
T Consensus 1306 ~~~~i~~s~ 1314 (1353)
T TIGR02680 1306 DLDFVMTSE 1314 (1353)
T ss_pred CCCEEEEcc
Confidence 566666654
No 216
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.74 E-value=46 Score=40.24 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=16.6
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhh
Q 002628 252 LDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (899)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (899)
|...++|-..|+..+++|+.+|..++.--
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el 325 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEEL 325 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666665555433
No 217
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=10 Score=45.41 Aligned_cols=130 Identities=25% Similarity=0.329 Sum_probs=97.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
.-.+|+++-+.||--||+-|..|..+ .++.++.+..|..+-++|.|+.-.+.|+| ++|.+--..=-|
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~---l~eke~sl~dlkehassLas~glk~ds~L----------k~leIalEqkkE 394 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAE---LTEKESSLIDLKEHASSLASAGLKRDSKL----------KSLEIALEQKKE 394 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hHHHHHHHHHHH
Confidence 45788999999999999999999984 46778889999999999988887776654 444442112246
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 002628 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEER 396 (899)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (899)
+.-.+.+.|-+|.|..|.|- +--.-.|+++.|+ .+++-|+--|-+.|..++.+-+=.|..|.-
T Consensus 395 ec~kme~qLkkAh~~~ddar-~~pe~~d~i~~le------~e~~~y~de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 395 ECSKMEAQLKKAHNIEDDAR-MNPEFADQIKQLE------KEASYYRDECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred HHHHHHHHHHHHHHhhHhhh-cChhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67778899999999999984 3344455555555 377888888888888888877766666543
No 218
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.64 E-value=2.7 Score=49.62 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 002628 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (899)
.++..|+..++....+..+....-.+...|++.++..++
T Consensus 331 ~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~ 369 (498)
T TIGR03007 331 ARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKS 369 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333444455555544443
No 219
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.64 E-value=44 Score=43.50 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhHhh--hHHHHHHHHHHhhhc
Q 002628 187 ARIRVAAQEKIHVEL--LEDQLQKLQHELTHR 216 (899)
Q Consensus 187 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (899)
..|+--|++-...+| --+|++.|..++..+
T Consensus 1492 ~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~ 1523 (1758)
T KOG0994|consen 1492 DSIEEVAEEVLALELPLTPEQIQQLTGEIQER 1523 (1758)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345555555554444 357888888887765
No 220
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=90.63 E-value=0.58 Score=58.36 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhh-------------hh-------hHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhc--hHHHHHH
Q 002628 325 YEKVENLQGLLAKATKQ-------------AD-------QAISVLQQNQELRKKVDKLEESLDEANIYKLS--SEKMQQY 382 (899)
Q Consensus 325 ~~~~~~~~~~~~~~~~~-------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 382 (899)
-++.+.++..|.++++. .| ....+.-+..+.++||+++=.++.- +.+.+. ....++.
T Consensus 152 ~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~e~~~k~v~vv~~~~~~~~~kv~~il~~~~f-~~~~~p~~~~~p~e~ 230 (759)
T PF01496_consen 152 REKIESFERILWRATRGNIFIRFSEIEEILEDPKEEVEKEVFVVFFSGKELEEKVKKILRSFGF-ERYDLPEDEGTPEEA 230 (759)
T ss_dssp HHHHHHHHHHHHHHHTT-----S------EEEE-EE-SSSEEEEEEEEGGGHHHHHHHHHTTT---B----GGGGG-HHH
T ss_pred hhhHHHHHHHHHHhccCCeEEEEEeeecccccccceeeeeeEEEEEEchhhHHHHHHHhhccCc-eecCCCCccccHHHH
Confidence 36788889999888776 11 1223333445567777777666532 333322 2345667
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002628 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (899)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (899)
-..++++++.+++.++...+++.+.++.+...+.+-...+.+.+.
T Consensus 231 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 275 (759)
T PF01496_consen 231 IKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKE 275 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999888887777776665444
No 221
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.61 E-value=12 Score=45.17 Aligned_cols=180 Identities=21% Similarity=0.300 Sum_probs=95.3
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhH-HHHHhhhhcchhhhhccccchh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSL-KELESKLSISQEDVAKLSTLKV 319 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 319 (899)
+-.+-.|+..||.||--|.++|..+|.+|+.- -+...++-.|.+|...+...- .+++.....++-|.. .....
T Consensus 164 ~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~ 241 (546)
T KOG0977|consen 164 IKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNRE 241 (546)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchH
Confidence 44678899999999999999999999877642 355667778888888776332 345555555666664 22222
Q ss_pred hhhh-HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhh-hhchHHHH---HHHHHHHHHHHHHH
Q 002628 320 ECKD-LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQ---QYNELMQQKMKLLE 394 (899)
Q Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~ 394 (899)
+.++ |..-+..+++.-+.--.+..+.+- .-.++||+++..+-+.++.. ...-|.+. .-..-|+.|+--||
T Consensus 242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE-----~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE 316 (546)
T KOG0977|consen 242 YFKNELALAIREIRAQYEAISRQNRKDIE-----SWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc
Confidence 2221 233333333333332111111111 12678899988765555432 22222222 22233555665555
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002628 395 ERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (899)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (899)
.+-......|.-+=-.-...-.-|..+|+....+-.+
T Consensus 317 ~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~ 353 (546)
T KOG0977|consen 317 SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAK 353 (546)
T ss_pred ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 5544444444332111123345566666654444444
No 222
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.60 E-value=10 Score=45.56 Aligned_cols=61 Identities=23% Similarity=0.377 Sum_probs=34.4
Q ss_pred HHHHHHHhh-hhhhhhc-------hHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002628 360 DKLEESLDE-ANIYKLS-------SEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (899)
Q Consensus 360 ~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (899)
+++-++|++ .....++ .+.+++..+.+++.+.+|+..++..-.|+...-......++.|+.
T Consensus 252 EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~ 320 (511)
T PF09787_consen 252 EKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFRE 320 (511)
T ss_pred HHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 556666776 3333444 366777777777777777777754444443333333333444433
No 223
>PRK11281 hypothetical protein; Provisional
Probab=90.52 E-value=38 Score=44.56 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=40.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH------HHHHHHHHHHHHh
Q 002628 371 IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLY------QESVKEFQDTLHS 424 (899)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 424 (899)
..+++++.-+.+.++++.+-++|++=.+..|+++.-.+.+. ..-+++.+++|+.
T Consensus 394 ~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~~ 453 (1113)
T PRK11281 394 KSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453 (1113)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777788999999999999999999999988777663 2225666666654
No 224
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.45 E-value=14 Score=40.29 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchh
Q 002628 142 NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETD 186 (899)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (899)
+.-.++--|.--+--.-++|+++..|++++-..+-.+++.+.+-+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le 58 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLE 58 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444555555555555555555555544443
No 225
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.25 E-value=24 Score=43.31 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=7.3
Q ss_pred hcCCCchhhhhhh
Q 002628 476 KRNGRIRDAYMEC 488 (899)
Q Consensus 476 ~~~~~~~~~~~~~ 488 (899)
++|.....||.-+
T Consensus 544 KkDe~~rkaYK~L 556 (594)
T PF05667_consen 544 KKDEAARKAYKLL 556 (594)
T ss_pred hcCHHHHHHHHHH
Confidence 3555556677543
No 226
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.19 E-value=11 Score=41.51 Aligned_cols=149 Identities=22% Similarity=0.340 Sum_probs=86.4
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH---HHHHHHHHHHHHHHh
Q 002628 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL---YEKVENLQGLLAKAT 339 (899)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 339 (899)
+..++.+|++|.+.++. .+++-+.|+..+.+|++++..+|++++-|+|-+. +.. -=++.+|...|+.++
T Consensus 62 ~~~l~~ak~eLqe~eek------~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~vqIa~L~rqlq~lk 133 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEK------EESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKAVQIANLVRQLQQLK 133 (258)
T ss_pred hHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 45677777777766654 4577888999999999999999999999999876 222 224566666666543
Q ss_pred hhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchH---HHHHHH--------HHHHHHHHHHHHhhccchHHHHHHH
Q 002628 340 KQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSE---KMQQYN--------ELMQQKMKLLEERLQRSDEEIHSYV 408 (899)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (899)
++ .++..|.|++.... ...+++.. +-++.+ .-++.- +-.+. ..+.-|...+
T Consensus 134 ~~-------------qqdEldel~e~~~~-el~~l~~~~q~k~~~il~~~~~k~~~~~~~~---l~~~~-~~N~~m~kei 195 (258)
T PF15397_consen 134 DS-------------QQDELDELNEMRQM-ELASLSRKIQEKKEEILSSAAEKTQSPMQPA---LLQRT-LENQVMQKEI 195 (258)
T ss_pred HH-------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchHH---HHHHH-HHHHHHHHHH
Confidence 32 12223333322211 01111110 000000 011111 11111 3456677778
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhcccCCCCC
Q 002628 409 QLYQESVKEFQDTLHSLKEESKKRAVHEPVD 439 (899)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (899)
..+.+.|++|..-+..|+.+-+. +...+.
T Consensus 196 ~~~re~i~el~e~I~~L~~eV~~--L~~~~~ 224 (258)
T PF15397_consen 196 VQFREEIDELEEEIPQLRAEVEQ--LQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 88888888888888888877776 544444
No 227
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.07 E-value=47 Score=42.11 Aligned_cols=154 Identities=26% Similarity=0.409 Sum_probs=68.6
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhh----hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002628 251 ELDSLKTENLSLKNDIKVLKAELNSVK----DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (899)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
.|.....++-.|..|+++|..+|..-. .-...+-.++.|.+.+..-|.+|-..+-+....|. .|..
T Consensus 330 sl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~----------~Lq~ 399 (775)
T PF10174_consen 330 SLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKIN----------VLQK 399 (775)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 333333344444444444444443321 12333444444444444444444444333333222 3455
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 002628 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (899)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (899)
|+|+|+..|..=.++.+.+-.-|..+.| .-+.|.+-+.|++|...+ +.++.++. +--..+..+-..
T Consensus 400 kie~Lee~l~ekd~ql~~~k~Rl~~~~d-~~~~~~~~~~lEea~~ek----------er~~e~l~---e~r~~~e~e~~E 465 (775)
T PF10174_consen 400 KIENLEEQLREKDRQLDEEKERLSSQAD-SSNEDEALETLEEALREK----------ERLQERLE---EQRERAEKERQE 465 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHH
Confidence 6666666664433444443333332111 123344445555555433 23333332 112334445556
Q ss_pred HHHHHHHHHHHHHHHHHhhHhh
Q 002628 407 YVQLYQESVKEFQDTLHSLKEE 428 (899)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~ 428 (899)
.+..|+..+++...+++.|-++
T Consensus 466 ele~~~~e~~~lk~~~~~LQ~e 487 (775)
T PF10174_consen 466 ELETYQKELKELKAKLESLQKE 487 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 6667777777777766666443
No 228
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.71 E-value=56 Score=39.70 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=15.5
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhh
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
.+++..+..|+-.|+.++..++.+++.
T Consensus 331 ~~dve~mn~Er~~l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 331 GEDVERMNLERNKLKRELNKIQSELDR 357 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655555543
No 229
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.71 E-value=30 Score=40.66 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHh
Q 002628 138 SMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHEL 213 (899)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (899)
.-+.+++++|--+|...-..=+...+..++...+..+|+.++..|.+|...++...+ ...-++..|++|+.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~---~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK---QIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHH
Confidence 446777888877777666555556666666666666666666666666555544333 2334455566665544
No 230
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.66 E-value=61 Score=42.69 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=39.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH------HHHHHHHHHHHh
Q 002628 371 IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ------ESVKEFQDTLHS 424 (899)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 424 (899)
-.+++++.-+.+.++++.+-++|++=.+..|..|...+++.. +.+++.+++|+.
T Consensus 370 ~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~~ 429 (1109)
T PRK10929 370 GQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEATHR 429 (1109)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677767778889999999999999999999987766532 224555555544
No 231
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=89.52 E-value=30 Score=36.80 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=56.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhh-hhchHHHHHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHH
Q 002628 347 SVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDT 421 (899)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 421 (899)
.+++..|.+.+.++++.+.++..... +-..+|+++.+.- +++++...+.++......|..-+..+... +.+|.++
T Consensus 112 ~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~ 191 (216)
T cd07627 112 KLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNS 191 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777766665432 2235666665544 56788888888888888888888888655 8888888
Q ss_pred HHhhHh
Q 002628 422 LHSLKE 427 (899)
Q Consensus 422 ~~~~~~ 427 (899)
|...-+
T Consensus 192 l~~~~e 197 (216)
T cd07627 192 VEIYLE 197 (216)
T ss_pred HHHHHH
Confidence 877443
No 232
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.38 E-value=15 Score=38.89 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHH
Q 002628 383 NELMQQKMKLLEERLQRSDEEIHSYVQ 409 (899)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (899)
|-+|++|++.|.+.+...+.++.+.+.
T Consensus 145 n~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 145 NLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666666554
No 233
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.38 E-value=44 Score=38.05 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=97.1
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (899)
-++|+.-+...|++|..|+.+++.|+++|.+...--+-++ ..+++........ .+...+
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR----------~~la~~r~~~~~~---~~~~~~-------- 125 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLR----------EKLARQRVGDEGI---GARHFP-------- 125 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----------HHHHhhhhhhccc---cccccc--------
Confidence 3588999999999999999999999999887765544443 3333333222110 000111
Q ss_pred HHHHHHHHHHHHHHhhhhhhH-----------HHHhhhhHHHHHHHHHHHHHHhhhhhh----hhchHHHHHHHHHHHHH
Q 002628 325 YEKVENLQGLLAKATKQADQA-----------ISVLQQNQELRKKVDKLEESLDEANIY----KLSSEKMQQYNELMQQK 389 (899)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 389 (899)
+.=|.|=..|.+++.|..+- --+...-...+.|++.|-.-|.-.--. =..-+.+--.|..|+++
T Consensus 126 -~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~er 204 (319)
T PF09789_consen 126 -HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKER 204 (319)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHH
Confidence 22223333333333333322 012223334455555554443221000 01233444467777888
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh-hHhhhhhcc---cCCCCCCCChHHHHHHHHHhhhhhhhcccChH
Q 002628 390 MKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS-LKEESKKRA---VHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTS 465 (899)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~ 465 (899)
++.+++-. +.+.+-|.+| ..+|+. -++..-+-. -...+.=|++.=-.++|.. ...-.+--.++.
T Consensus 205 l~q~qeE~----~l~k~~i~KY-------K~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~-~~~~~~~~~~~~ 272 (319)
T PF09789_consen 205 LKQLQEEK----ELLKQTINKY-------KSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLES-ESNGCSLPASPQ 272 (319)
T ss_pred HHHHHHHH----HHHHHHHHHH-------HHHHHhhccccccccCCCCCCcccccccHHHHHHHHhc-ccccCCCCCCcc
Confidence 87776643 2344444455 445552 111111100 1223344766666677742 221112245667
Q ss_pred HHHHHHHHH
Q 002628 466 EAKLLREMV 474 (899)
Q Consensus 466 ~a~~l~~~~ 474 (899)
-+++|+.++
T Consensus 273 s~sdLksl~ 281 (319)
T PF09789_consen 273 SISDLKSLA 281 (319)
T ss_pred hHHHHHHHH
Confidence 778888765
No 234
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.38 E-value=29 Score=41.82 Aligned_cols=127 Identities=28% Similarity=0.312 Sum_probs=67.6
Q ss_pred HHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcc
Q 002628 165 LQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSE 244 (899)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (899)
..+-|.|+.+|.+|-..|.+|-..+--||+ .+.++||+. +
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAe--yGL~lLeeK-~------------------------------------- 46 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAE--YGLELLEEK-E------------------------------------- 46 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-H-------------------------------------
Confidence 456677888888888888887665555555 455666432 1
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECK 322 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (899)
.|-+.|+.|..|--+.+..|+.+|+.+-...-.-.++. .++.|-++|+.|-..=+. =+.++-.|+-|-|
T Consensus 47 --~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~-------yl~kI~eleneLK 117 (772)
T KOG0999|consen 47 --DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEY-------YLQKILELENELK 117 (772)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHH-------HHHHHHHHHHHHH
Confidence 22333444444444444445555555544444444433 346666666544322111 2233444555555
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 002628 323 DLYEKVENLQGLLAKATK 340 (899)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~ 340 (899)
.+-..++|.|.=.++.++
T Consensus 118 q~r~el~~~q~E~erl~~ 135 (772)
T KOG0999|consen 118 QLRQELTNVQEENERLEK 135 (772)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 565666666655555443
No 235
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=25 Score=43.66 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002628 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEAL 171 (899)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (899)
++=+..|.+++.|+-. |.+|+.|-.+++-.+++..++
T Consensus 376 ~~~~le~~k~~~ke~~--~~~~~ka~~E~e~l~q~l~~~ 412 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQR--DKLQVKARAETESLLQRLKAL 412 (698)
T ss_pred HHHHHHHHhCCCHHHH--hHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777644 344444444444444444443
No 236
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.24 E-value=8 Score=38.12 Aligned_cols=127 Identities=24% Similarity=0.386 Sum_probs=71.8
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 002628 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (899)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (899)
+++.|+.|...++.++.....++....+ .++........+=...|..+.-=-+|+-.|..++-++..+-..+..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~------dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~ 77 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLRE------DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINE 77 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333322 2344444455555566666777777788888888877777777777
Q ss_pred HHHHHHHHhhhhhhHHHH-hhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHH
Q 002628 331 LQGLLAKATKQADQAISV-LQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLL 393 (899)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (899)
|+.-.+.|....+++-.. -.+-..|.+.++.++. +.+.|..-|.+|++++..+
T Consensus 78 l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~----------r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 78 LKAEAESAKAELEESEASWEEQKEQLEKELSELEQ----------RIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence 666666655554443221 2233344444444443 4566777888888887653
No 237
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.99 E-value=18 Score=45.08 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=25.2
Q ss_pred hhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc
Q 002628 171 LQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR 216 (899)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (899)
||+++..|...++++. .++.+.--.+|.+-+|||++|+-++
T Consensus 434 Le~elekLk~eilKAk-----~s~~~~~~~~L~e~IeKLk~E~d~e 474 (762)
T PLN03229 434 LEGEVEKLKEQILKAK-----ESSSKPSELALNEMIEKLKKEIDLE 474 (762)
T ss_pred HHHHHHHHHHHHHhcc-----cccCCCCChHHHHHHHHHHHHHHHH
Confidence 5555555555555551 1233444456778888888888775
No 238
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.89 E-value=9.5 Score=43.41 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=6.6
Q ss_pred CCCeEEEEeeCCC
Q 002628 544 KGHLVEIVLPKYD 556 (899)
Q Consensus 544 ~GHeVtVItP~Y~ 556 (899)
.|-.|.|-.+.|+
T Consensus 326 ~G~~v~v~~~~~~ 338 (423)
T TIGR01843 326 VGQPAEIKFSAFP 338 (423)
T ss_pred CCCceEEEEecCC
Confidence 4555555544443
No 239
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.61 E-value=12 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=12.6
Q ss_pred hhhhhccchhHHHHHHHHhhh
Q 002628 255 LKTENLSLKNDIKVLKAELNS 275 (899)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~ 275 (899)
.-+.|..|+.+.+.+|.+|.+
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~ 494 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQN 494 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444677777777766654
No 240
>PRK11281 hypothetical protein; Provisional
Probab=88.56 E-value=23 Score=46.44 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=9.2
Q ss_pred HHHHHhcCCCchh
Q 002628 471 REMVWKRNGRIRD 483 (899)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (899)
+.++|=++..+.+
T Consensus 453 ~~lfWv~s~~pid 465 (1113)
T PRK11281 453 QQIFWVNSNKPMD 465 (1113)
T ss_pred HhhhccCCCCCcC
Confidence 4678877777764
No 241
>PLN02939 transferase, transferring glycosyl groups
Probab=88.45 E-value=25 Score=45.38 Aligned_cols=133 Identities=20% Similarity=0.299 Sum_probs=80.0
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 002628 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (899)
+-+-.|..|...|...+..|..++....+.--.+..|+-|+ +=..+..|+.-|..+-..+.+--.+-..-.+|.+||+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (977)
T PLN02939 257 ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVD 334 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34456778888899999999999887777666677777775 4444444444443332222222222233347999999
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 002628 330 NLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 394 (899)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (899)
.|++.|..|.----..- --.-+|.||..+|+.|.+.. ..|+.|.++-|+-++.+-
T Consensus 335 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 389 (977)
T PLN02939 335 KLEASLKEANVSKFSSY----KVELLQQKLKLLEERLQASD------HEIHSYIQLYQESIKEFQ 389 (977)
T ss_pred HHHHHHHHhhHhhhhHH----HHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHH
Confidence 99999987642211111 11346789999998887644 344444444444444433
No 242
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.32 E-value=27 Score=41.37 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=13.2
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 280 DERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
.+.+...+-++..+++.++.|+.++..
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~ 236 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGG 236 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444455555555555555443
No 243
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.14 E-value=5.5 Score=43.40 Aligned_cols=128 Identities=27% Similarity=0.339 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcc
Q 002628 156 QALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPAN 235 (899)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (899)
.+-.++.....++|+++.++-.++..+.+..+|++.+-. +...---
T Consensus 42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~-kl~~v~~--------------------------------- 87 (239)
T COG1579 42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE-KLSAVKD--------------------------------- 87 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccc---------------------------------
Confidence 344556666677777788888888777777666654321 1111111
Q ss_pred cccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhh-cc
Q 002628 236 EDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVA-KL 314 (899)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 314 (899)
..|++.|.-|=-.+|..+..|..+|.+ ..+++-.|+++...+..++..+|..+.++.+.+. ++
T Consensus 88 -------------~~e~~aL~~E~~~ak~r~~~le~el~~---l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 88 -------------ERELRALNIEIQIAKERINSLEDELAE---LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666655544 3556677778888888888888777777665542 33
Q ss_pred ccchhhhhhHHHHHHHHHH
Q 002628 315 STLKVECKDLYEKVENLQG 333 (899)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~ 333 (899)
.-+..+-..+..+-+.|-.
T Consensus 152 ~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 152 AEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444555554443
No 244
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=88.06 E-value=55 Score=42.34 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 002628 359 VDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL 397 (899)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (899)
+++|+.+|.......---+.|-++|+++-+|-|.-=.-+
T Consensus 1287 l~~L~~tlD~S~~a~Kqk~di~kl~~~lv~kQKAYP~M~ 1325 (1439)
T PF12252_consen 1287 LDKLEKTLDDSDTAQKQKEDIVKLNDFLVEKQKAYPAMV 1325 (1439)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 567777777766665566777788888877666544333
No 245
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.98 E-value=53 Score=37.19 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=61.9
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhh-
Q 002628 293 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANI- 371 (899)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 371 (899)
+..+|.|+..++..-.+.-.+ +..|-..|-+|...|-...+. + ++...-+-...||+-++ +++-|+.++.
T Consensus 112 Fq~~L~dIq~~~ee~~~~~~k---~~~eN~~L~eKlK~l~eQye~---r-E~~~~~~~k~keLE~Ql--~~AKl~q~~~~ 182 (309)
T PF09728_consen 112 FQATLKDIQAQMEEQSERNIK---LREENEELREKLKSLIEQYEL---R-EEHFEKLLKQKELEVQL--AEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHHHHHhccchhHH---HHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHhhHHHHHHHH--HHHHHHHHHHH
Confidence 566777777777655554444 233323344444333333322 2 22222222344444333 2222322221
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002628 372 YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (899)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (899)
.+-..++.+++++.|=.+...+ ..+.....+...+|..|.+-.++||+||.+
T Consensus 183 ~~~e~~k~~~~~~~~l~~~~~~-~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~k 234 (309)
T PF09728_consen 183 AEQEKEKAKQEKEILLEEAAQV-QTLKETEKELREQLNLYSEKFEEFQDTLNK 234 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344455555333333322 234556678889999999999999999876
No 246
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.81 E-value=20 Score=38.42 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=24.8
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002628 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (899)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (899)
.++.++..+.+|-...+.++..+..+|..|.+
T Consensus 141 AeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 141 AEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666688888888888888888888887766
No 247
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.77 E-value=4.6 Score=46.83 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 002628 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (899)
.+...|+.-++....+..+.-..-.+...|+++++-.+.
T Consensus 318 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~ 356 (444)
T TIGR03017 318 QREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQR 356 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444433344455666666665444
No 248
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.67 E-value=61 Score=39.01 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=42.5
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002628 250 KELDSLKTENLSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (899)
.|++.|+.|...+++.++.|..++.. ..+..+.-..++.|...++.-+++++..+.... .+ ..||.-.+...
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~-e~e~~l~~~el 346 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPEL------TT-EAELRLYYQEL 346 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------ch-HHHHHHHHHHH
Confidence 55666666666666666666666522 222333334566666667777777766553322 12 55555555555
Q ss_pred HHHHHH
Q 002628 329 ENLQGL 334 (899)
Q Consensus 329 ~~~~~~ 334 (899)
..++.=
T Consensus 347 ~~~~ee 352 (511)
T PF09787_consen 347 YHYREE 352 (511)
T ss_pred HHHHHH
Confidence 555443
No 249
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.61 E-value=7.4 Score=43.94 Aligned_cols=49 Identities=29% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHhhhhhHHHHHHH-----HHHHHHHHHHHHHH-HHHhhhhhhHHHhhhhchh
Q 002628 138 SMIRNAEKNILLLNEA-----RVQALEDLHKILQE-KEALQGEINALEMRLAETD 186 (899)
Q Consensus 138 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 186 (899)
..++|.-.+-.+...+ |.+-++.+...|.+ .+.|+...+.|...++..+
T Consensus 122 ~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 122 NQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555543 56666666655543 4566666666666555544
No 250
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.61 E-value=9.7 Score=43.03 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=37.0
Q ss_pred hccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh-cchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002628 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS-ISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (899)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (899)
-..|++|.+.|...+..+. +-+-.+....+.|+..+..|..... ....|-.+|..++.+-...-.+++..+..|+.
T Consensus 158 ~~~L~~D~~~L~~~~~~l~---~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 158 LELLQEDYAKLDKQLEQLD---ELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544443333 2223333344444444444443322 44566666666666666666666655555544
No 251
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=87.58 E-value=23 Score=40.98 Aligned_cols=137 Identities=24% Similarity=0.390 Sum_probs=69.4
Q ss_pred HHhhhhhhhhhHHHHHHhhh----------------hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHH
Q 002628 271 AELNSVKDADERVVMLEMER----------------SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGL 334 (899)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (899)
..+..+++-|.||..||+=- ..|-.+|.+|++|++.-+. .+|..++-.-+.|-.+.++|.
T Consensus 206 ~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~--~~Ld~i~~rl~~L~~~~~~l~-- 281 (388)
T PF04912_consen 206 QQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP--AKLDSIERRLKSLLSELEELA-- 281 (388)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHH--
Confidence 35677778888888777632 1244567777777766532 344444333333333333322
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhc----hHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHH
Q 002628 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLS----SEKMQQYNELMQQKMKLLEERLQ---RSDEEIHSY 407 (899)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 407 (899)
+..+ + ..+..+...||+.|=+.|..-.-+--. .+.|+.++ -||+.+..+-.++. ....+|.+.
T Consensus 282 --~~~~----~---~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~-~lH~~a~~~~~~l~~le~~q~~l~~~ 351 (388)
T PF04912_consen 282 --EKRK----E---AKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLK-SLHEEAAEFSQTLSELESQQSDLQSQ 351 (388)
T ss_pred --hccc----c---ccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 123345567777777666654433222 12233222 23444444444433 344566666
Q ss_pred HHHHHHHHHHHHHH
Q 002628 408 VQLYQESVKEFQDT 421 (899)
Q Consensus 408 ~~~~~~~~~~~~~~ 421 (899)
++.+...+...+..
T Consensus 352 l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 352 LKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666554
No 252
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.58 E-value=32 Score=43.07 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=32.2
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLK 298 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 298 (899)
.+.-..|-.|||.|+..+-.++.+|-+. .--++.+-.|||+|+-+..-++
T Consensus 315 eqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr 368 (1265)
T KOG0976|consen 315 EQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR 368 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH
Confidence 3444567778888887777666666554 3445666778888876554443
No 253
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=12 Score=44.96 Aligned_cols=42 Identities=40% Similarity=0.465 Sum_probs=26.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHH-------HhhhhhhHHHHhhhhHHHH
Q 002628 315 STLKVECKDLYEKVENLQGLLAK-------ATKQADQAISVLQQNQELR 356 (899)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 356 (899)
..|+.|-+.|-|.+|-|...++. |.+|.+.|...|++-.+-+
T Consensus 197 EglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk 245 (772)
T KOG0999|consen 197 EGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQK 245 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555666666666655554443 4568888888888766543
No 254
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.23 E-value=34 Score=43.90 Aligned_cols=215 Identities=18% Similarity=0.250 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccccc
Q 002628 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDL 238 (899)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (899)
+.|...+.|..+|++.-..||..+....+.+.---+ .++-++..+|.+|......+-.|--+ ..-|.
T Consensus 174 ~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~---~~~~l~kdVE~~rer~~~~~~Ie~l~------~k~~~---- 240 (1072)
T KOG0979|consen 174 EELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLED---EIDKLEKDVERVRERERKKSKIELLE------KKKKW---- 240 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------Hhccc----
Confidence 346777888899999999999999887766653333 45678888899998887765443110 00111
Q ss_pred ccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccch
Q 002628 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLK 318 (899)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (899)
-..--...|++.++..--.+|.++..+..+.. ......-.||.|++.+.+..+.+-.-+-.+-+.+-++..
T Consensus 241 ----v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~---pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~e-- 311 (1072)
T KOG0979|consen 241 ----VEYKKHDREYNAYKQAKDRAKKELRKLEKEIK---PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFE-- 311 (1072)
T ss_pred ----cchHhhhHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 00112245666666666666666666555433 333344455555555555555444444433333222111
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHH-HHHHHHHHHHHHhh
Q 002628 319 VECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYN-ELMQQKMKLLEERL 397 (899)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 397 (899)
.-+..=++|+.++.-|..+.+++++--. .=+..++-++.+++-|.+++++.-.-+++|..+ +.+|.+..-+.+.-
T Consensus 312 -k~~~~~~~v~~~~~~le~lk~~~~~rq~---~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~ 387 (1072)
T KOG0979|consen 312 -KLKEIEDEVEEKKNKLESLKKAAEKRQK---RIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSR 387 (1072)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhh
Confidence 0012223445555555555555554311 223456777888888999999888888776543 44444444444333
Q ss_pred cc
Q 002628 398 QR 399 (899)
Q Consensus 398 ~~ 399 (899)
+.
T Consensus 388 ~~ 389 (1072)
T KOG0979|consen 388 QE 389 (1072)
T ss_pred hh
Confidence 33
No 255
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=87.00 E-value=1.9 Score=40.17 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=25.9
Q ss_pred CCCceEEEECCCchhhHHHHHHHhhccCCCCCCeEEEEecCC
Q 002628 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNF 679 (899)
Q Consensus 638 ~~kPDIIH~Hdw~talVapl~~~~ya~~gL~giPiV~TIHn~ 679 (899)
..+.||||.|...+.+..-.++-+ +.-|.++|+|=|.+
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~hA----~~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAILHA----RTMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHHHH----HhCCCcEEeecccc
Confidence 468999999987665542222211 23589999999975
No 256
>PRK11519 tyrosine kinase; Provisional
Probab=86.94 E-value=48 Score=41.51 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=30.4
Q ss_pred CCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEe
Q 002628 511 GLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVL 552 (899)
Q Consensus 511 ~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVIt 552 (899)
+-|++.|++.. | .-|-..++.+||.+|+..|+.|-+|=
T Consensus 525 ~~kvi~vts~~-~---geGKTt~a~nLA~~la~~g~rvLlID 562 (719)
T PRK11519 525 QNNVLMMTGVS-P---SIGKTFVCANLAAVISQTNKRVLLID 562 (719)
T ss_pred CceEEEEECCC-C---CCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 44888888743 2 34778889999999999999999994
No 257
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.85 E-value=39 Score=37.77 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=27.3
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~ 557 (899)
|||..|+.. .-|...-+-.||+.|.+ .++++....|.+
T Consensus 1 ~ki~aisD~------RtGnt~QaiaLa~~l~r--~eyttk~l~~~~ 38 (329)
T COG3660 1 MKIWAISDG------RTGNTHQAIALAEQLTR--SEYTTKLLEYNN 38 (329)
T ss_pred CceEEeecC------CCccHHHHHHHHHHhhc--cceEEEEeeccc
Confidence 788888763 45667777788888875 577777766664
No 258
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=85.96 E-value=44 Score=35.25 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=53.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhh-hhchHHHHH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHH
Q 002628 347 SVLQQNQELRKKVDKLEESLDEANIY-KLSSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDT 421 (899)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 421 (899)
..+.+.+.+.+.+++.++.++.+... +-+.+++++ ..+-+++++..++.++......+..=++.+... +.+|+.+
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~ 211 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSM 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777666665 334455543 344566777777888888888888877777766 7888887
Q ss_pred HHhh
Q 002628 422 LHSL 425 (899)
Q Consensus 422 ~~~~ 425 (899)
|...
T Consensus 212 l~~~ 215 (236)
T PF09325_consen 212 LEEY 215 (236)
T ss_pred HHHH
Confidence 7663
No 259
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.88 E-value=1.3e+02 Score=39.68 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=18.3
Q ss_pred CCcEEEEEecCCCccCHHHHHHHHHHh
Q 002628 805 RKPLVGCITRLVPQKGVHLIRHAIYRT 831 (899)
Q Consensus 805 ~kpLVgfVGRL~~qKGvdlLIeAi~~L 831 (899)
...+++|+|-+.+. +...++-++.++
T Consensus 1131 ~~~~l~~~~~~~k~-~~~~~il~i~k~ 1156 (1317)
T KOG0612|consen 1131 SKKILFYVSEQDKE-QSGPLILDIKKL 1156 (1317)
T ss_pred ccceEeeecccccc-ccchhhhhhhhc
Confidence 45677888888876 666676677663
No 260
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.14 E-value=14 Score=46.16 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=64.0
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 002628 252 LDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (899)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (899)
+..|+.+=..+...+..+... ..+....+..+..+.+.|++.+++.-.++..+ ++.+....-.+.+.|
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~---y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~---------~~~~~~~a~~~~~~L 357 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTT---MLANHPRVVAAKSSLADLDAQIRSELQKITKS---------LLMQADAAQARESQL 357 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 333444433344333333332 34455567777777777777665543333222 233444666777888
Q ss_pred HHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 002628 332 QGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (899)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (899)
+..++....++.+.-..-.+..+|+++++-.++.++
T Consensus 358 ~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 358 VSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777777888888888887776554
No 261
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.75 E-value=28 Score=41.01 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=19.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNS 275 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
.+..+++.++..-..++..+..|++++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666776667777777777666654
No 262
>PF13514 AAA_27: AAA domain
Probab=84.71 E-value=1.5e+02 Score=39.21 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=10.4
Q ss_pred HhhhhHHHHHHHHHHHHHH
Q 002628 348 VLQQNQELRKKVDKLEESL 366 (899)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~ 366 (899)
-.++...++.++..++..|
T Consensus 852 ~~~~~~~l~~~~~~~~~~l 870 (1111)
T PF13514_consen 852 RAEERRELREELEDLERQL 870 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555556666665555
No 263
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=84.59 E-value=62 Score=34.72 Aligned_cols=94 Identities=15% Similarity=0.266 Sum_probs=63.5
Q ss_pred HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHH---HHHHHHHHHhhccchHHHHHHHHHH
Q 002628 335 LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM---QQKMKLLEERLQRSDEEIHSYVQLY 411 (899)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (899)
+..+..--.+=.-+++..|.++..+++.++.++...... .++|+++.+.-+ ++++.....+++..-.-|..-+..+
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~-~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF 186 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG-RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERF 186 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445577888888888888888776665432 356776655544 6777788888888888888877777
Q ss_pred HHH-HHHHHHHHHhhHhhh
Q 002628 412 QES-VKEFQDTLHSLKEES 429 (899)
Q Consensus 412 ~~~-~~~~~~~~~~~~~~~ 429 (899)
... +.+|..+|...-+..
T Consensus 187 ~~erv~dfk~~l~~~le~~ 205 (224)
T cd07623 187 EKNRVKDFKDIIIKYLESL 205 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 655 888888887754433
No 264
>PF13514 AAA_27: AAA domain
Probab=84.40 E-value=1.5e+02 Score=39.10 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 265 DIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
.++.++..+........++..++++...++..+..|=..+..
T Consensus 734 ~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~ 775 (1111)
T PF13514_consen 734 LLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGP 775 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 344555566666666667777777777776666666555443
No 265
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.14 E-value=8.3 Score=41.89 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhhhhHH
Q 002628 160 DLHKILQEKEALQGEINAL 178 (899)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (899)
.+.+...+++.|+.+|+.+
T Consensus 28 ~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666776666543
No 266
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.11 E-value=96 Score=38.67 Aligned_cols=71 Identities=20% Similarity=0.265 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccch--HHHH----HHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHH
Q 002628 377 EKMQQYNELMQQKMKLLEERLQRSD--EEIH----SYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLL 450 (899)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 450 (899)
.+|..+.+.+|+++..+..+.+-+- +... .++..|...+.+-.+.++.+++.-|.-++ ..-.+|
T Consensus 308 s~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~----------srk~il 377 (660)
T KOG4302|consen 308 SNMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEAL----------SRKEIL 377 (660)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 3466677888899999999988887 4444 45566666666766667776655544211 224577
Q ss_pred HHhhhhh
Q 002628 451 LIIDGWL 457 (899)
Q Consensus 451 l~~d~~~ 457 (899)
-++|.|.
T Consensus 378 ~~ve~W~ 384 (660)
T KOG4302|consen 378 ERVEKWE 384 (660)
T ss_pred HHHHHHH
Confidence 7899994
No 267
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.09 E-value=20 Score=40.59 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=34.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL-YEK 327 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 327 (899)
..||+.+|++=..+..+|+..+.++.+ ++.|.+.+++.+.+.+.+...-++.+.++....-+|+.| -..
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e----------~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEE----------LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 345555554444444444444444332 233344444444444444444444444444444555555 334
Q ss_pred HHHHHHHHH
Q 002628 328 VENLQGLLA 336 (899)
Q Consensus 328 ~~~~~~~~~ 336 (899)
|.+|++.+.
T Consensus 273 i~~Lk~~~~ 281 (312)
T smart00787 273 IEKLKEQLK 281 (312)
T ss_pred HHHHHHHHH
Confidence 444444333
No 268
>PRK09039 hypothetical protein; Validated
Probab=83.90 E-value=32 Score=39.43 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHH
Q 002628 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (899)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (899)
.+++.++..|++.|.+... .+++ .+.-..+|+++|..|+..+..-..+|
T Consensus 112 ~~~~~~~~~l~~~L~~~k~--~~se-~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQ--VSAR-ALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred chHHHHHHHHHHHHHHHHH--HHHH-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666655554432 1222 22344666777777766644433333
No 269
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=83.82 E-value=16 Score=41.93 Aligned_cols=60 Identities=3% Similarity=-0.189 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHhhccCcEEEEEcCCCccCcc--------------HHHHHHhcCeeEEcCCcCcChHHHHHHccCCccc
Q 002628 820 GVHLIRHAIYRTLELGGQFILLGSSPVPHIQ--------------VYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV 884 (899)
Q Consensus 820 GvdlLIeAi~~Lle~dvqLVIVG~Gp~~~Lq--------------ke~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V 884 (899)
-+..+++|+.++.+...++++.|......++ ...+|++||+.++.| |.+.+|++.+|+|.
T Consensus 184 llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~~~~~~~m~~aDlal~~S-----GT~TLE~al~g~P~ 257 (347)
T PRK14089 184 LMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEISYDTHKALLEAEFAFICS-----GTATLEAALIGTPF 257 (347)
T ss_pred HHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEeccHHHHHHhhhHHHhcC-----cHHHHHHHHhCCCE
Confidence 3445557777776544677777765321111 117889999999887 88999999888765
No 270
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.81 E-value=17 Score=42.67 Aligned_cols=53 Identities=25% Similarity=0.367 Sum_probs=39.9
Q ss_pred ccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 002628 130 TSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRL 182 (899)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (899)
.-+...|-.+|++.|+-|--+..++.+.-.++.++-+..+++-..++.|+...
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34566677888888888888888888888888877777777777777776554
No 271
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=83.46 E-value=5.4 Score=42.55 Aligned_cols=141 Identities=27% Similarity=0.316 Sum_probs=87.1
Q ss_pred CccccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHH
Q 002628 125 GEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLED 204 (899)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (899)
..++++-|-|-+++.|.+. +| -+++.+.+-+.-|+..+. .+| -..-
T Consensus 56 ~~Gf~~kQAETIt~aiT~v------~n----dsl~~vsk~~vtkaqq~~----v~~--------------------QQ~~ 101 (220)
T KOG3156|consen 56 AAGFDSKQAETITSAITTV------LN----DSLETVSKELVTKAQQEK----VSY--------------------QQKV 101 (220)
T ss_pred HcCCChhhHHHHHHHHHHH------Hc----ccHHHHHHHHHHHHHHHH----HHH--------------------HHHH
Confidence 4567777888888887763 33 357777776666554432 121 2345
Q ss_pred HHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH-
Q 002628 205 QLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV- 283 (899)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 283 (899)
.+-|+|.+|-+ ..-.||..|+.||-.|||||+.+|+.|.+--.+.-.=
T Consensus 102 ~f~kiRsel~S-------------------------------~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~ 150 (220)
T KOG3156|consen 102 DFAKIRSELVS-------------------------------IERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEF 150 (220)
T ss_pred HHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 56788888876 3356899999999999999999999997654332211
Q ss_pred ---HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002628 284 ---VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (899)
Q Consensus 284 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (899)
.-|||=|--=+++-.+|--+ +++ ..+=..|.||..+++.+.-|.-|.
T Consensus 151 rLdLNLEkgr~~d~~~~~~l~~~---------e~s------~kId~Ev~~lk~qi~s~K~qt~qw 200 (220)
T KOG3156|consen 151 RLDLNLEKGRIKDESSSHDLQIK---------EIS------TKIDQEVTNLKTQIESVKTQTIQW 200 (220)
T ss_pred eeecchhhccccchhhhcchhHh---------HHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344332222222222222 111 123367888888888877776654
No 272
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.42 E-value=37 Score=35.97 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=18.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELN 274 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (899)
+|.-.+|+.+||+.-+-.++....+...+.
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777766666666655555443
No 273
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=83.40 E-value=1.2e+02 Score=37.26 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhh
Q 002628 155 VQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ 194 (899)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (899)
..-|++++.-+...+.+|..|.-|+.|+++...++.....
T Consensus 127 k~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie 166 (629)
T KOG0963|consen 127 KEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIE 166 (629)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3457888888888999999999999999999887765443
No 274
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.22 E-value=1.9e+02 Score=39.25 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=56.7
Q ss_pred HHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc
Q 002628 166 QEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI 245 (899)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (899)
.+.++++.++..++..+.....++.-+ +...+.++.+++.++.++..- ..+..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~le~~~~~l~~~~~~l------------------------~~~~a 328 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEEREL---DARTEALEREADALRTRLEAL------------------------QGSPA 328 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh------------------------cCCHH
Confidence 344555566666666666555544322 223456677777777777653 22223
Q ss_pred chhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 002628 246 HSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQ 308 (899)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (899)
....++++.++.+...+..++.....++.. ...+...++.+...++..+.+.+..+..+.
T Consensus 329 ~~~~~eL~el~~ql~~~~~~a~~~~~~~~~---a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~ 388 (1353)
T TIGR02680 329 YQDAEELERARADAEALQAAAADARQAIRE---AESRLEEERRRLDEEAGRLDDAERELRAAR 388 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777777655555555544444322 233333344443334444444444433333
No 275
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=83.01 E-value=22 Score=35.50 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=26.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVML 286 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (899)
..++..+-++-..+.+|++..+..+..+....+.+...
T Consensus 32 ~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~ 69 (213)
T cd00176 32 LESVEALLKKHEALEAELAAHEERVEALNELGEQLIEE 69 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 34566666677778888888888888877777665543
No 276
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.98 E-value=8.7 Score=37.84 Aligned_cols=56 Identities=38% Similarity=0.457 Sum_probs=35.1
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhh-hHHHHHHhhhhhHHhhHHHHHhhh
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDAD-ERVVMLEMERSSLESSLKELESKL 304 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 304 (899)
.++|..+|+|.-.++..|..|+++.......= ..-...+.++..|+..+.+++.++
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888777655432 222334444445555555555443
No 277
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.54 E-value=70 Score=34.71 Aligned_cols=155 Identities=21% Similarity=0.344 Sum_probs=86.6
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhh
Q 002628 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQ 341 (899)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (899)
+++.|..|...|. +++..|+-...+=.+.++..+..|..++..--.+ +...++.-+..|-+++..|+..+..-..+
T Consensus 39 i~e~i~~Le~~l~--~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~--~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 39 IKEQIQKLEKALE--AEVKRRVESNKKLQSKFEEQINNMQERVENQISE--KQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554443 3455555555555566777777776555433222 44555555667777777777777665554
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 002628 342 ADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (899)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (899)
-.+.+ -..++.|.++|..|.+.++.-.......+. +. ++.|++....-...|..-.......+.++.+.
T Consensus 115 r~~~i--e~~~~~l~~~l~~l~~~~~~Er~~R~erE~--~i-------~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~ 183 (247)
T PF06705_consen 115 RPQDI--EELNQELVRELNELQEAFENERNEREEREE--NI-------LKRLEEEENRLQEKIEKEKNTRESKLSELRSE 183 (247)
T ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 345677888888888888766555444431 12 23344444444444444344444455555665
Q ss_pred HHhhHhhhhh
Q 002628 422 LHSLKEESKK 431 (899)
Q Consensus 422 ~~~~~~~~~~ 431 (899)
|+.++...++
T Consensus 184 le~~~~~~~~ 193 (247)
T PF06705_consen 184 LEEVKRRREK 193 (247)
T ss_pred HHHHHHHHhh
Confidence 6665544433
No 278
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.50 E-value=71 Score=39.00 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 002628 152 EARVQALEDLHKILQEKEALQGEINALEMRLAET 185 (899)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (899)
++=.++-.+|+++.....+...+++-|+-.+.|-
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~El 197 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEEL 197 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555666666555554
No 279
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=82.39 E-value=81 Score=34.44 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=52.5
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHH---HHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHH
Q 002628 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNE---LMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLH 423 (899)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 423 (899)
+.++.|+++..+.+.++.++.-.- ...++|+++... -+++|+...+.+|+.....|..-+..++.. +++|..++.
T Consensus 131 ~~~~~~~~~~~l~kKr~~~~Kl~~-~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~ 209 (234)
T cd07665 131 TWQRWQDAQAMLQKKREAEARLLW-ANKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHII 209 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444333211 124677776543 467899999999999999999999888887 899998877
Q ss_pred h
Q 002628 424 S 424 (899)
Q Consensus 424 ~ 424 (899)
.
T Consensus 210 ~ 210 (234)
T cd07665 210 K 210 (234)
T ss_pred H
Confidence 7
No 280
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.27 E-value=1.1e+02 Score=39.97 Aligned_cols=19 Identities=47% Similarity=0.538 Sum_probs=14.0
Q ss_pred hHhhhhhhhhhccchhHHH
Q 002628 249 SKELDSLKTENLSLKNDIK 267 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (899)
..||.++++|..-++.-+.
T Consensus 496 ~~el~~~~ee~~~~~~~l~ 514 (1041)
T KOG0243|consen 496 NKELESLKEELQQAKATLK 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888877776643
No 281
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.07 E-value=1.4e+02 Score=39.34 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhh----hhhhhhHhhhHHHHHHHHHHhhhc
Q 002628 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVA----AQEKIHVELLEDQLQKLQHELTHR 216 (899)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 216 (899)
.+..+..++-|+++++.+....-|.+.|.-.--| -|....+++.++-|.|.+++++..
T Consensus 1549 s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~a 1610 (1758)
T KOG0994|consen 1549 SEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAA 1610 (1758)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665432211 233345667777888888888764
No 282
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=81.53 E-value=22 Score=40.37 Aligned_cols=123 Identities=21% Similarity=0.312 Sum_probs=78.8
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHH--hhhhhHHhhHHHHHhhhhcchhhhhccc----cc
Q 002628 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLE--MERSSLESSLKELESKLSISQEDVAKLS----TL 317 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 317 (899)
....|..|+..||..=..++-||..|+..+....-.++.+..-. .||+.|=..|..+..+...-+.|+--+- -+
T Consensus 80 ~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl 159 (319)
T PF09789_consen 80 QNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477888888888877888888888888877654443332222 6666666666666666666555554333 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhHH----HHhhhhHHHHHHHHHHHHHH
Q 002628 318 KVECKDLYEKVENLQGLLAKATKQADQAI----SVLQQNQELRKKVDKLEESL 366 (899)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 366 (899)
..|=...-.||+.|..-|.-+.+-.+.-| .++-.|.-|+.++-.+++..
T Consensus 160 ~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 160 VTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444567899998887766665544332 25667888888777776543
No 283
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.52 E-value=39 Score=42.76 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=69.2
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhH
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDL 324 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (899)
+..+..+|..++.||..|.+.++ +-++-|..|.++++..++.+.+|-.+|...+-+. ++||||---+
T Consensus 94 l~e~~~~l~~~~~e~~~l~~~l~----------~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken---~~Lkye~~~~ 160 (769)
T PF05911_consen 94 LAELSKRLAESAAENSALSKALQ----------EKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN---SSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44668888999999988877653 3345566677777777777777777776665543 4567776555
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHH
Q 002628 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESL 366 (899)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (899)
.+.+|---.=.+--++-||-| -.|+.+=-+||-|||+--
T Consensus 161 ~keleir~~E~~~~~~~ae~a---~kqhle~vkkiakLEaEC 199 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAA---SKQHLESVKKIAKLEAEC 199 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 555543333233333333333 567788889999999754
No 284
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.21 E-value=0.48 Score=59.96 Aligned_cols=60 Identities=25% Similarity=0.457 Sum_probs=0.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
.+...+..++.+|..|.++|..|...+++. .+-+.....||.|...|...|.|+|..+..
T Consensus 423 e~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~ 486 (859)
T PF01576_consen 423 ELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEA 486 (859)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888887776653 334444455555555555555555554444
No 285
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=80.76 E-value=28 Score=38.65 Aligned_cols=136 Identities=21% Similarity=0.304 Sum_probs=78.1
Q ss_pred ccchhHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHH
Q 002628 130 TSQLDNLISMIRNAEK-NILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQK 208 (899)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (899)
+.=|+=|.+.|+-..+ ++.-|...++ ..+..++...|..+=++.=|.++|-|.-...+...+ .+..+.+-+.
T Consensus 125 S~yLe~Lc~IIqeLq~t~~~~LS~~dl---~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~----~~~~e~eke~ 197 (269)
T PF05278_consen 125 SYYLECLCDIIQELQSTPLKELSESDL---KEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQ----HETREEEKEE 197 (269)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhhHHHH---HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3446667777777766 4666666664 456677778888888888888888774211111111 1122222222
Q ss_pred HHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHh
Q 002628 209 LQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEM 288 (899)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (899)
.+..|. ..-+|++.+.+|=......+..++. .++++-.|+..|+.
T Consensus 198 ~~r~l~--------------------------------~~~~ELe~~~EeL~~~Eke~~e~~~---~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 198 KDRKLE--------------------------------LKKEELEELEEELKQKEKEVKEIKE---RITEMKGRLGELEM 242 (269)
T ss_pred HHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 222221 2234444444443333333333443 34677888999999
Q ss_pred hhhhHHhhHHHHHhhhhcc
Q 002628 289 ERSSLESSLKELESKLSIS 307 (899)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~ 307 (899)
|++-|...+..+.||.--.
T Consensus 243 ~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 243 ESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999888877765433
No 286
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=80.51 E-value=37 Score=40.26 Aligned_cols=215 Identities=19% Similarity=0.235 Sum_probs=113.3
Q ss_pred CCCccccccchhHHHHHHHhhhhhH-HHHHHHHHHHHH--HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhH
Q 002628 123 DGGEELSTSQLDNLISMIRNAEKNI-LLLNEARVQALE--DLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHV 199 (899)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (899)
|.+-+.+..==+|....++|.--=. --.|..|+-|+- ---+||.=.-=+-.-|.-++|-|+-- .+...+-.-
T Consensus 151 Dp~f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~~~~~~~~-----~tl~qq~~~ 225 (622)
T COG5185 151 DPGFGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKLDMCLQPL-----KTLDQQDRY 225 (622)
T ss_pred CCCCCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHHHHHHhhh-----chHhhccHH
Confidence 3344445444455555555432111 124666666662 23466666655666666677766321 111111111
Q ss_pred hhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhh-hhhhhccchhHHHHHHHHhhhhhh
Q 002628 200 ELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDS-LKTENLSLKNDIKVLKAELNSVKD 278 (899)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 278 (899)
|++ +||+-=+---+ +-..|+... +.--++-+||.. ..+-|.-+-+||..||++..+.-+
T Consensus 226 e~~---Vek~lfdY~~~------~Y~~fl~~~-----------~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e 285 (622)
T COG5185 226 ELM---VEKLLFDYFTE------SYKSFLKLE-----------DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYE 285 (622)
T ss_pred HHH---HHHHHHHHHHH------HHHHHhcCC-----------CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 33332221111 111222211 111144566643 445577788899999988766544
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc----cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHH
Q 002628 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLS----TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQE 354 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (899)
-- +|--.+.+.++.|+.|-.+-+.|.-++- .++.-...|--+.+.|+.=... +=.+-+-
T Consensus 286 ~i-------~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----------kEeei~~ 348 (622)
T COG5185 286 KI-------QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----------KEEEIKA 348 (622)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----------HHHHHHH
Confidence 33 3444566677777777766666665542 2333333455666666654443 3445577
Q ss_pred HHHHHHHHHHHHhhhhhhhhchHHH
Q 002628 355 LRKKVDKLEESLDEANIYKLSSEKM 379 (899)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (899)
||.+.|.|...++.-.|+-.--+++
T Consensus 349 L~~~~d~L~~q~~kq~Is~e~fe~m 373 (622)
T COG5185 349 LQSNIDELHKQLRKQGISTEQFELM 373 (622)
T ss_pred HHhhHHHHHHHHHhcCCCHHHHHHH
Confidence 8899999999999888875544433
No 287
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.34 E-value=82 Score=39.84 Aligned_cols=101 Identities=29% Similarity=0.332 Sum_probs=54.7
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh------------------------hhhhhHHHHHHhhhhhHHhhHHHHHh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV------------------------KDADERVVMLEMERSSLESSLKELES 302 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (899)
+.-+|++.++.||-.|+++-+-+-.+|..- +...+-+..+-++-+...+++.++++
T Consensus 734 t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~ 813 (970)
T KOG0946|consen 734 TQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQS 813 (970)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 345677888888877776665555555221 12234555666666667777778887
Q ss_pred hhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHH
Q 002628 303 KLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAIS 347 (899)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (899)
++..-+++...+-...-.--+.-+..+.-..-++++++.++|-..
T Consensus 814 e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls 858 (970)
T KOG0946|consen 814 ELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLS 858 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHH
Confidence 777777766544332222112222222222334555555555433
No 288
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.06 E-value=55 Score=35.30 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=16.9
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNS 275 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
++..-++.++.|.-.+=+.=..+-..|..
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~ 85 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLRE 85 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777766655554444444443
No 289
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=80.03 E-value=69 Score=40.75 Aligned_cols=230 Identities=21% Similarity=0.265 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc-ccCcccchhhhccCCCCcccc
Q 002628 159 EDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-GVSEHSELDVFANQNEPANED 237 (899)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 237 (899)
.+.++.++.+..++..+..||-|++-..+.+-- .-.+++.+-+++.-. ..+.....+ ......|
T Consensus 557 q~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e----------~~se~e~~l~~l~l~~el~~~~~~d-----~ls~mkd 621 (984)
T COG4717 557 QHWQQLRKALDQLEAAYEALEGRFAAAEAAMAE----------WQSEWEEALDELGLSRELSPEQQLD-----ILSTMKD 621 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHhccCCccCCcHHHHH-----HHHHHHH
Confidence 467788888888888888888887766544321 223445555555433 111111111 0111222
Q ss_pred cccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHH-HHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 002628 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVV-MLEMERSSLESSLKELESKLSISQEDVAKLST 316 (899)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (899)
...-+-.+|.|..+..-|++|-...-+-.+.|-+.+ +....+.+.. -.++=|...+ ..-|..-.++|.+..--.-
T Consensus 622 ~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~-e~~~~~ls~~~~~~r~~~~~e---~~~Ee~r~~le~~~~~t~E 697 (984)
T COG4717 622 LKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVL-EAQFIDLSTLFCVQRLRVAAE---LQKEEARLALEGNIERTKE 697 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHH---HhhHHHHHHHhhhHHHHHH
Confidence 222334445555555555555544444444444333 2222222211 1111111100 0011111222222221111
Q ss_pred chhhhhhHHHH-HHHHHHHHHHHhhhhh----hHHHHhhhhHHHHHHHHHHHHHHh--hhhhhhhchHHHHHHHHHHHHH
Q 002628 317 LKVECKDLYEK-VENLQGLLAKATKQAD----QAISVLQQNQELRKKVDKLEESLD--EANIYKLSSEKMQQYNELMQQK 389 (899)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 389 (899)
+..+-++=-++ =..+-+|+|+++-.-+ +|+.--+|.++...++..+++.|+ -+.-|.++.+..|..-- ...
T Consensus 698 l~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~--e~E 775 (984)
T COG4717 698 LNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK--EEE 775 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh--hHH
Confidence 11111111111 2245678887764433 456778999999999999999999 67788888875544322 344
Q ss_pred HHHHHHhhccchHH---HHHHHH
Q 002628 390 MKLLEERLQRSDEE---IHSYVQ 409 (899)
Q Consensus 390 ~~~~~~~~~~~~~~---~~~~~~ 409 (899)
..++|+.++.-+++ ++++|.
T Consensus 776 ~~~lEe~~d~~~ee~~el~a~v~ 798 (984)
T COG4717 776 LALLEEAIDALDEEVEELHAQVA 798 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665554 555544
No 290
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=80.00 E-value=1.7e+02 Score=36.59 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=54.1
Q ss_pred cCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh--hhhhh--hHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccc
Q 002628 240 LNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS--VKDAD--ERVVMLEMERSSLESSLKELESKLSISQEDVAKLS 315 (899)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (899)
..-..||.|-..|+...+.|...-.-++.||.+|.. +++++ ...-.|.-|...+-....++-..+...|+|+....
T Consensus 447 ~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k 526 (786)
T PF05483_consen 447 IREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSK 526 (786)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456679999999999999999888899999999985 34433 33445555555555555566556666777776543
No 291
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=79.73 E-value=74 Score=37.70 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=54.2
Q ss_pred ccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh----------cch
Q 002628 239 VLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS----------ISQ 308 (899)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 308 (899)
+..++.+|.+.+||..+|-|--.-++|++.+..+ +-.|+.+--.+|+..++||+... +++
T Consensus 298 ~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q----------~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~ 367 (554)
T KOG4677|consen 298 IQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQ----------YTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASI 367 (554)
T ss_pred cCCCCcchhHHHHHHHHHhcccccHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhh
Confidence 4567779999999999999999999999887654 34455555666677777776553 345
Q ss_pred hhhhccccchhhhhh
Q 002628 309 EDVAKLSTLKVECKD 323 (899)
Q Consensus 309 ~~~~~~~~~~~~~~~ 323 (899)
..+-.+-++++||--
T Consensus 368 ~~~~~~l~~~~ec~~ 382 (554)
T KOG4677|consen 368 LNMPLVLTLFYECFY 382 (554)
T ss_pred hhchHHHHHHHHHHH
Confidence 555556677888843
No 292
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.30 E-value=36 Score=42.66 Aligned_cols=91 Identities=24% Similarity=0.317 Sum_probs=58.9
Q ss_pred chhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccch
Q 002628 184 ETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLK 263 (899)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (899)
|.|--..+...-+-..+.+|.|...||.||..--..|- .+-.+++.|.+||.+|.
T Consensus 56 e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~-------------------------rll~dyselEeENislQ 110 (717)
T PF09730_consen 56 ENERLSQLNQELRKECEDLELERKRLREEIKEYKFREA-------------------------RLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHhhhhHHHHHHHHHHH
Confidence 33333444555556677788888888888876433321 34566788888998888
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH
Q 002628 264 NDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 299 (899)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (899)
..+-.||+-=.++-..---+..|+.|-..|.+.+.|
T Consensus 111 Kqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877666655555555566665555555543
No 293
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.93 E-value=67 Score=41.66 Aligned_cols=173 Identities=20% Similarity=0.286 Sum_probs=96.6
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhh----hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc----
Q 002628 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNS----VKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL---- 314 (899)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 314 (899)
+.+|.|-..+..++.+=..+|.++..++.++.. ..+...++..++++-...+..+++|+.+....+..|-+=
T Consensus 683 ~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~ 762 (1141)
T KOG0018|consen 683 SKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRR 762 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345556666666665555566666555555533 334555666777777777888888888777776655321
Q ss_pred ---ccchhhhhhHH----HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHH
Q 002628 315 ---STLKVECKDLY----EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 387 (899)
Q Consensus 315 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (899)
.-..||=..+. .|.-.++..++++.+|.| +..| +|.+++|.+++.+++..+. ..+.+++-.+.+-
T Consensus 763 igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~----fe~~-~d~~~~ve~~~~~v~~~~~---~~~~~~~~e~~~~ 834 (1141)
T KOG0018|consen 763 IGVRIREYEERELQQEFAKKRLEFENQKAKLENQLD----FEKQ-KDTQRRVERWERSVEDLEK---EIEGLKKDEEAAE 834 (1141)
T ss_pred cCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----heec-ccHHHHHHHHHHHHHHHHH---hHHhhHHHHHHHH
Confidence 12233322221 233334455555555543 4444 9999999999999887654 3444444445555
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002628 388 QKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (899)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (899)
..+...|+.=.++ ++-...++..+.+-...+..+-+
T Consensus 835 k~i~e~~~~e~k~----k~~~~~~~~e~~e~~k~~~~~~~ 870 (1141)
T KOG0018|consen 835 KIIAEIEELEKKN----KSKFEKKEDEINEVKKILRRLVK 870 (1141)
T ss_pred HHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443222211 45555555555555555554433
No 294
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=78.78 E-value=40 Score=35.70 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=17.3
Q ss_pred hhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002628 248 FSKELDSLKTENLSLKNDIKVLKAELNSV 276 (899)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
+-.+++.++.||..||.=----..+|...
T Consensus 24 lq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~ 52 (194)
T PF15619_consen 24 LQRKLQELRKENKTLKQLQKRQEKALQKY 52 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888876433333344444
No 295
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=78.02 E-value=2e+02 Score=36.35 Aligned_cols=52 Identities=27% Similarity=0.430 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhh-----HhhhHHHHHHHHHHhhhc
Q 002628 164 ILQEKEALQGEINALEMRLAETDARIRVAAQEKIH-----VELLEDQLQKLQHELTHR 216 (899)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 216 (899)
+-.|..-|+.++..|-..|.|. .|+|--++.... ...=-+|--.||.||.+.
T Consensus 126 ~Khei~rl~Ee~~~l~~qlee~-~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 126 LKHEIKRLEEEIELLNSQLEEA-ARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555554 333333322110 001113334678888884
No 296
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.87 E-value=1.5e+02 Score=34.95 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=110.2
Q ss_pred cccccchhHHH-------HHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhHHHhhhhchhhhhhhhhhh
Q 002628 127 ELSTSQLDNLI-------SMIRNAEKNILLLNEARVQALEDLHK----ILQEKEALQGEINALEMRLAETDARIRVAAQE 195 (899)
Q Consensus 127 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (899)
++-++-+.||+ .-|=.|==|.-++-++|.+-.++.-- .+.-+-.+-.++..+.+.+-..|..-. ..
T Consensus 95 ~v~dF~~~DLlkPes~Rtq~~LSavvNfa~fRe~k~~~~~~~~~q~eslle~~~q~da~~qq~~~ele~~d~~~~---~d 171 (446)
T KOG4438|consen 95 GVLDFSFKDLLKPESSRTQRFLSAVVNFALFREEKMDLYRPFIQQLESLLELRKQLDAKYQQALKELERFDEDVE---ED 171 (446)
T ss_pred CcCCCchhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cc
Confidence 45677777876 34445556777777777765544322 222223333345566666666654322 22
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCccc-chhhHhhhhhhhhhccchhH-HHHHHHHh
Q 002628 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEI-HSFSKELDSLKTENLSLKND-IKVLKAEL 273 (899)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 273 (899)
-.-+.=+|++.+.|.+-|..- -.. -++..+.+..|..+.+++++ +.++|-..
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd--------------------------~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv 225 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKD--------------------------FNQQMSLLAEYNKMKKSSTSEKNKILNALKLLV 225 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 223444566666555444331 001 14566677777777776654 34555544
Q ss_pred hhhhhhhhHHH------------HHHhhhhh---HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHH
Q 002628 274 NSVKDADERVV------------MLEMERSS---LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKA 338 (899)
Q Consensus 274 ~~~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (899)
..+.++.+.+. .+++=+-. ..++..+|+.|-.+-++-|.-+.+++-|-+++..++.....-+
T Consensus 226 ~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~--- 302 (446)
T KOG4438|consen 226 VTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEY--- 302 (446)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence 44444433111 11111111 3345555665555555555555555555444444433332211
Q ss_pred hhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhh
Q 002628 339 TKQADQAISVLQQNQELRKKVDKLEESLDEANIY 372 (899)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (899)
+.-+.++..|.+|..|.++....+.-++.+.+.
T Consensus 303 -d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~~ 335 (446)
T KOG4438|consen 303 -DSLETKVVELKEILELEDQIELNQLELEKLKMF 335 (446)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667778889999988877666656555443
No 297
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=77.78 E-value=6.9 Score=41.40 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=39.3
Q ss_pred hhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc-chhhhhccccchhhhhhHHH-HHHHHHHH
Q 002628 273 LNSVKDADERVVMLEMERSSLESSLKELESKLSI-SQEDVAKLSTLKVECKDLYE-KVENLQGL 334 (899)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (899)
.+....+|--.+.|++|-+.||+.|...|..-.. ...+-++...+|.|...|.+ |-+.|+.+
T Consensus 88 fS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~ 151 (195)
T PF12761_consen 88 FSATEGTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLREL 151 (195)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677778888999988888888888877766 33344455555665444444 44444443
No 298
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=77.70 E-value=6.4 Score=44.32 Aligned_cols=105 Identities=27% Similarity=0.286 Sum_probs=65.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (899)
..|...||.||-+||..++.||.++... |.|+- . +++-|++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerL----------E~e~l--~---------------------------s~V~E~v 71 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERL----------ENEML--R---------------------------SHVCEDV 71 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHH----------HHHhh--h---------------------------hhhhhHH
Confidence 3577889999999999999999987554 22211 0 1466888
Q ss_pred HHHHHHHHHHhhhhhhH-HHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 002628 329 ENLQGLLAKATKQADQA-ISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSY 407 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (899)
+..|...++++|-.+.+ ..++-|..++ ++.+.-|....-|++-|.|+-+-.|+ .+++-.
T Consensus 72 et~dv~~d~i~Kimnk~Re~vlfq~d~~-----------------~ld~~lLARve~LlRlK~e~~~~~f~---k~~~~l 131 (420)
T PF07407_consen 72 ETNDVIYDKIVKIMNKMRELVLFQRDDL-----------------KLDSVLLARVETLLRLKDEQPSAEFD---KDSHPL 131 (420)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccc-----------------cccHHHHHHHHHHHHhhhhccccccc---chhhhH
Confidence 88888888888777776 2333222221 23333344455678888887776554 344445
Q ss_pred HHHHH
Q 002628 408 VQLYQ 412 (899)
Q Consensus 408 ~~~~~ 412 (899)
|.-|-
T Consensus 132 Ig~Yf 136 (420)
T PF07407_consen 132 IGRYF 136 (420)
T ss_pred Hhhhc
Confidence 55453
No 299
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.40 E-value=1.8e+02 Score=37.80 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002628 377 EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (899)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (899)
.++-++++++.|| ...-++....+++.-++.|++-=-+|.+
T Consensus 408 r~~~~~~~~~~~k---~~~~l~~~~~d~~dAy~wlrenr~~FK~ 448 (1072)
T KOG0979|consen 408 RKLKQNSDLNRQK---RYRVLRQGSSDAYDAYQWLRENRSEFKD 448 (1072)
T ss_pred HHHHHHhhhhhhh---HHHHhccCchHHHHHHHHHHHCHHHhcc
Confidence 4566788888888 4556777778888888888877767765
No 300
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=77.14 E-value=1.2e+02 Score=33.16 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=50.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHH
Q 002628 347 SVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNEL---MQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTL 422 (899)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 422 (899)
-++++.|..+.-+.|.++.++...- ...++|+++..+- .+.++...+..++....-|.+-|..+... +.+|..+|
T Consensus 130 k~~~~~~~a~~~L~kkr~~~~Kl~~-~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l 208 (234)
T cd07664 130 KCWQKWQDAQVTLQKKREAEAKLQY-ANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 208 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655544321 1236777766544 45677777777777777777777777655 88888777
Q ss_pred HhhH
Q 002628 423 HSLK 426 (899)
Q Consensus 423 ~~~~ 426 (899)
...-
T Consensus 209 ~~fl 212 (234)
T cd07664 209 IKYL 212 (234)
T ss_pred HHHH
Confidence 7643
No 301
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=77.10 E-value=1.2e+02 Score=33.21 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=32.9
Q ss_pred hhhhhHHhhHHHHHhhhhcchhhhhcc-ccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhH
Q 002628 288 MERSSLESSLKELESKLSISQEDVAKL-STLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQ 353 (899)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (899)
.|-..-+.-|.....-|..-+.+...| ..+...-.+.-.|+..|+++|..|..+..+|-.+...|+
T Consensus 153 ~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~ 219 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQ 219 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333 223333334456667777777777777777666555554
No 302
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.63 E-value=5.2 Score=42.60 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=12.7
Q ss_pred HHhhhhhhHHHhhhhchhhh
Q 002628 169 EALQGEINALEMRLAETDAR 188 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ 188 (899)
.+||.|+..|+.+|++.+..
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 35566666677777776544
No 303
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=76.63 E-value=2.6e+02 Score=36.88 Aligned_cols=35 Identities=9% Similarity=0.105 Sum_probs=19.4
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (899)
+...++..++.+-..++..+.....++..+.....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 328 (1047)
T PRK10246 294 PHWERIQEQSAALAHTRQQIEEVNTRLQSTMALRA 328 (1047)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655555443333
No 304
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.53 E-value=51 Score=38.56 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=45.8
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhh--------hhhH
Q 002628 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVE--------CKDL 324 (899)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 324 (899)
..||-|-..|-|.++.=.+.|.+ .--+|+-+||.|...|..+| |=+.---....||++.-....+ ..-|
T Consensus 182 eQLRre~V~lentlEQEqEalvN--~LwKrmdkLe~ekr~Lq~Kl-Dqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l 258 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEALVN--SLWKRMDKLEQEKRYLQKKL-DQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKL 258 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-cCcccCCCchhhhhcCccccCchHHHHHHHHHHH
Confidence 56666666666666654444432 34567777777777777666 3333333455666665333221 1123
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002628 325 YEKVENLQGLLAKATKQ 341 (899)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ 341 (899)
...||.|+..|..|.++
T Consensus 259 ~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554444
No 305
>PRK10869 recombination and repair protein; Provisional
Probab=76.41 E-value=1.9e+02 Score=35.29 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhccchHHHHH
Q 002628 385 LMQQKMKLLEERLQRSDEEIHS 406 (899)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~ 406 (899)
.|+++++.+++.+.....++..
T Consensus 345 ~Le~e~~~l~~~l~~~A~~LS~ 366 (553)
T PRK10869 345 TLALAVEKHHQQALETAQKLHQ 366 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 306
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.29 E-value=1e+02 Score=37.47 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=30.3
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh---hHHHHHHhhhhhHHhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD---ERVVMLEMERSSLESS 296 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 296 (899)
.+..++..++++...+...++.++.++.++.+.+ .--..|+.|+..|..+
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~ 224 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNL 224 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCH
Confidence 3456667777777777777777777766655443 2234566666555443
No 307
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=76.12 E-value=1.6 Score=39.16 Aligned_cols=30 Identities=13% Similarity=-0.127 Sum_probs=26.2
Q ss_pred eeEEcCCcCcChHHHHHHccCCcccccCCC
Q 002628 860 SFLRKHIFNICNLYIKLGQGGDLTVNNNCE 889 (899)
Q Consensus 860 IfVlPS~~EpFGLV~LEAMg~gl~Vidgv~ 889 (899)
|++.|+...++++..+|+||+|.+|+.+-+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~ 30 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDS 30 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECCh
Confidence 578899999999999999999999866644
No 308
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.10 E-value=49 Score=35.03 Aligned_cols=102 Identities=24% Similarity=0.388 Sum_probs=61.7
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH---------HHHhhhhHHHHHHHHH
Q 002628 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA---------ISVLQQNQELRKKVDK 361 (899)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 361 (899)
..|+..|+|||..+..+...+...-..+.. +-.+++.++....+-.++|..| ...|.+-.+++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~---le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKR---LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999888888888877766653 4455555555555555555555 3444444555555555
Q ss_pred HHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 002628 362 LEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (899)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (899)
|+..+..+ ....+.|...+..++.++..--.+-.
T Consensus 103 l~~~~~~~----------~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 103 LEQQLDQA----------EAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443 33445556666666666554444333
No 309
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.88 E-value=67 Score=38.52 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=56.1
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhh-hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 002628 251 ELDSLKTENLSLKNDIKVLKAELNSVK-DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (899)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (899)
.|..+-.|.-+|-+.++.|+..++.|. --..++..+||+|+-|+.-..+ +...-+.-|-|+..|-.+-+.--..++
T Consensus 232 Qlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~---e~~e~rk~v~k~~~l~q~~~~~~~eL~ 308 (613)
T KOG0992|consen 232 QLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE---ETTEKRKAVKKRDDLIQSRKQVSFELE 308 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788889999999999999998 6778899999999998876544 444455555555555444333333333
Q ss_pred HHHHHH
Q 002628 330 NLQGLL 335 (899)
Q Consensus 330 ~~~~~~ 335 (899)
.+++.+
T Consensus 309 K~kde~ 314 (613)
T KOG0992|consen 309 KAKDEI 314 (613)
T ss_pred HHHHHH
Confidence 333333
No 310
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.83 E-value=1e+02 Score=31.70 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=48.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhh-chHHHHH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHH
Q 002628 348 VLQQNQELRKKVDKLEESLDEANIYKL-SSEKMQQ---YNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTL 422 (899)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 422 (899)
++.+.+.+++.+.+.++.++......- ..+++++ -...+++.++.++.++......+..-+..+... +.+|..+|
T Consensus 115 ~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l 194 (218)
T cd07596 115 ALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555543211 2233332 334556677777788888777777777776664 77777777
Q ss_pred HhhHhh
Q 002628 423 HSLKEE 428 (899)
Q Consensus 423 ~~~~~~ 428 (899)
..+...
T Consensus 195 ~~~~~~ 200 (218)
T cd07596 195 KEFARL 200 (218)
T ss_pred HHHHHH
Confidence 765443
No 311
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=75.76 E-value=25 Score=37.31 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=41.9
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhh---hHHHHhh-hhHHHHHHHHHHHHHHhhhh
Q 002628 315 STLKVECKDLYEKVENLQGLLAKATKQAD---QAISVLQ-QNQELRKKVDKLEESLDEAN 370 (899)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (899)
..|+.|...|.++...++.-|.-|++-+| .++-|+. .++.+..+++.++.+|.+|.
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk 73 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK 73 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555556788888888888888777666 4555554 67888889999999999883
No 312
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=75.60 E-value=2.1e+02 Score=35.36 Aligned_cols=71 Identities=32% Similarity=0.373 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhH--------HHHhhh----hHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHH
Q 002628 323 DLYEKVENLQGLLAKATKQADQA--------ISVLQQ----NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKM 390 (899)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (899)
++...||.|...|.+++--.+++ .++|.| ++.|-..|..+++|+.+.- .-+...|++.+..+..+.
T Consensus 253 ~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~--e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 253 FLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER--EKHKAQISALEKELKAKI 330 (629)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 35566667776666665433333 444443 3445555666666665432 223344444555555554
Q ss_pred HHHHH
Q 002628 391 KLLEE 395 (899)
Q Consensus 391 ~~~~~ 395 (899)
.-+|+
T Consensus 331 ~~lee 335 (629)
T KOG0963|consen 331 SELEE 335 (629)
T ss_pred HHHHH
Confidence 44443
No 313
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=75.57 E-value=22 Score=39.24 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=35.5
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~ 554 (899)
|+|++|+..-+|+ ..||++.-+.+|.++|-+.-..|..|++.
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~ 42 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGAN 42 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCC
Confidence 7999999999999 48999999999999998866666666654
No 314
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.40 E-value=25 Score=36.17 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=22.1
Q ss_pred hhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc
Q 002628 275 SVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL 314 (899)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (899)
++.+...++..+++|...++..+.++++.+...+.+...+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555666666666666666666555554444333
No 315
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.25 E-value=6 Score=40.36 Aligned_cols=61 Identities=34% Similarity=0.476 Sum_probs=41.4
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhh------hhHHHHHHhhhhhHHhhHHHHHh
Q 002628 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDA------DERVVMLEMERSSLESSLKELES 302 (899)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 302 (899)
+..+..+..++..|++|...|+.++..|+++|...... ...+..|++|...|++.|..|.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566778888888888888888888888888876533 34445555555555555555543
No 316
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.79 E-value=43 Score=41.75 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002628 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (899)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (899)
++..+.||.++...+.+|+++.++|--.+.-|
T Consensus 775 ~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~ 806 (1104)
T COG4913 775 IEHRRQLQKRIDAVNARLRRLREEIIGRMSDA 806 (1104)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999986544444
No 317
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=74.51 E-value=4.4 Score=48.12 Aligned_cols=91 Identities=13% Similarity=-0.020 Sum_probs=52.9
Q ss_pred HHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCcc--CccH------------------
Q 002628 794 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVP--HIQV------------------ 851 (899)
Q Consensus 794 Rk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~--~Lqk------------------ 851 (899)
|+.||||. +..++++..++.+ =-+..++++.++++ .+.+|++...+... .+.+
T Consensus 276 R~~~gLp~---d~vvF~~fn~~~K--I~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~ 350 (468)
T PF13844_consen 276 RAQYGLPE---DAVVFGSFNNLFK--ISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVA 350 (468)
T ss_dssp TGGGT--S---SSEEEEE-S-GGG----HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE--
T ss_pred HHHcCCCC---CceEEEecCcccc--CCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCC
Confidence 78899984 6788888887764 35566778888776 37888777543221 1111
Q ss_pred --H---HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCCCc
Q 002628 852 --Y---PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEP 890 (899)
Q Consensus 852 --e---~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv~~ 890 (899)
. ..|..+||++=|-.|=+ |.|.+||+..|+||++=.+.
T Consensus 351 ~~~ehl~~~~~~DI~LDT~p~nG-~TTt~dALwmGVPvVTl~G~ 393 (468)
T PF13844_consen 351 PREEHLRRYQLADICLDTFPYNG-GTTTLDALWMGVPVVTLPGE 393 (468)
T ss_dssp -HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---S
T ss_pred CHHHHHHHhhhCCEEeeCCCCCC-cHHHHHHHHcCCCEEeccCC
Confidence 0 67788999998865544 78999999999999765443
No 318
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.25 E-value=55 Score=38.72 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=46.7
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHH
Q 002628 313 KLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKL 392 (899)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (899)
+|...+.....+-.++.+|+..+..+.....-+..-+ +.++.|++++...|.+-. .-..+|++-.+..++|+|.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~---~q~q~k~~k~~kel~~~~---E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL---QQLQTKLKKCQKELKEER---EENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHH
Confidence 3344444333444444444443333322222222223 345556666655554432 2234455555667778887
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002628 393 LEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (899)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (899)
+|++..+ .++-+...|.+.|.-|.+
T Consensus 422 ~~e~~~~-------~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 422 LEEREKE-------ALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 7777543 233344445555544444
No 319
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=74.07 E-value=1.7e+02 Score=36.68 Aligned_cols=94 Identities=23% Similarity=0.227 Sum_probs=52.8
Q ss_pred HHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccc
Q 002628 167 EKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (899)
..-.+|..+..+.|.|.+....++.+...+--. ...+..++.+........... ...+
T Consensus 108 ~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 165 (670)
T KOG0239|consen 108 LLSELQSNLSELNMALLESVEELSQAEEDNPSI---FVSLLELAQENRGLYLDLSKV-------------------TPEN 165 (670)
T ss_pred hccccccchhhhhhhhhhhhHhhhhhhcccccH---HHHHHHHHhhhcccccccccc-------------------chhh
Confidence 344567778888888888877666554433322 233555555554432221110 1111
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV 283 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (899)
..+ .++....+...+-+|+..+.++|..|.++.++.
T Consensus 166 ~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~ 201 (670)
T KOG0239|consen 166 SLS-LLDLALKESLKLESDLGDLVTELEHVTNSISEL 201 (670)
T ss_pred hHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222 333444556667778888888888888776653
No 320
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=74.03 E-value=1.9e+02 Score=34.13 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=64.5
Q ss_pred hhhHhhhhhhhhhccch----hHHHHHHHHhhhhhhhhhHHHHHHhhhh-------hHHhhHHHHHhhhhcchhhhhccc
Q 002628 247 SFSKELDSLKTENLSLK----NDIKVLKAELNSVKDADERVVMLEMERS-------SLESSLKELESKLSISQEDVAKLS 315 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 315 (899)
+|+..++.||-|-.-|. ..-+|+..+|- ..+.+||.+-- .|.-.--+||-++..-|+-+..
T Consensus 133 ~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm------~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN-- 204 (552)
T KOG2129|consen 133 PLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLM------NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVN-- 204 (552)
T ss_pred chhHHHHHHHhhhccHHHHHHHHHHHHHHHHH------HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHH--
Confidence 56778888886654443 33345544443 23333333321 2444445677777666665432
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHh---------------------hhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 002628 316 TLKVECKDLYEKVENLQGLLAKAT---------------------KQADQAISVLQQNQELRKKVDKLEESLDEANIYKL 374 (899)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (899)
.||.+...|..=-+-.. ..-|.|....-.-+-||..|..|..-|..|- |-
T Consensus 205 -------~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq--k~ 275 (552)
T KOG2129|consen 205 -------SLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ--KS 275 (552)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 47877776654322222 2334454444555666777777777776653 44
Q ss_pred chHHHHHH
Q 002628 375 SSEKMQQY 382 (899)
Q Consensus 375 ~~~~~~~~ 382 (899)
-.+|++||
T Consensus 276 ~~ek~~qy 283 (552)
T KOG2129|consen 276 YQEKLMQY 283 (552)
T ss_pred HHHHHHHH
Confidence 56666665
No 321
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.02 E-value=1.2e+02 Score=35.27 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHhhh-hhhhhchHHHHHHHHHHHHHHHHHHHhh
Q 002628 352 NQELRKKVDKLEESLDEA-NIYKLSSEKMQQYNELMQQKMKLLEERL 397 (899)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (899)
-++|+.++..++..|.+. ..|.-..-+++. ++.++..++..+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~----l~~~i~~l~~~l 298 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKR----AQAEINSLKSQL 298 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH----HHHHHHHHHHHH
Confidence 357888888888888875 457777776654 344444444444
No 322
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=73.80 E-value=2e+02 Score=34.66 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccch
Q 002628 376 SEKMQQYNELMQQKMKLLEERLQRSD 401 (899)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (899)
.+.|.+...=|+++++.++.+++.+.
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444555567777777777777554
No 323
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.60 E-value=74 Score=32.21 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhhch
Q 002628 155 VQALEDLHKILQEKEALQGEINALEMRLAET 185 (899)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (899)
.+..+.|..+-.++.-|+..|--||.-|..+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777766443
No 324
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=73.32 E-value=23 Score=36.51 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=6.9
Q ss_pred HhhhhhhhhhccchhHHH
Q 002628 250 KELDSLKTENLSLKNDIK 267 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (899)
+|++.+.+.+..+..++.
T Consensus 95 ~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 95 EELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334433333333333333
No 325
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=73.25 E-value=1.3e+02 Score=35.48 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=52.5
Q ss_pred Hhhhh-HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHhh
Q 002628 348 VLQQN-QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSL 425 (899)
Q Consensus 348 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 425 (899)
++++. +.|.+++..++.-+...+ ..|+++-.|+-+++..-.-..++++.|++. +.+++.
T Consensus 346 ~l~~~~~~L~~~~~~l~~~~~~~~--------------~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~~~~----- 406 (458)
T COG3206 346 LLEQQEAALEKELAQLKGRLSKLP--------------KLQVQLRELEREAEAARSLYETLLQRYQELSIQEASP----- 406 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhch--------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----
Confidence 34443 777777777776665543 234455555555665555666677777766 333222
Q ss_pred HhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccChHHH
Q 002628 426 KEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEA 467 (899)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~~a 467 (899)
-..-+..+.++--..+.+=...+..+-|+++..+++..=|
T Consensus 407 --~~n~rvIs~A~~P~~p~~Pk~~l~l~~g~~~G~~~g~~~a 446 (458)
T COG3206 407 --IGNARVISPAVPPLSPSKPKKALILALGGVLGLFLGLGAA 446 (458)
T ss_pred --CCceeEeccccCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333332222222344446678877766665544
No 326
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=72.92 E-value=1.8e+02 Score=33.30 Aligned_cols=64 Identities=27% Similarity=0.266 Sum_probs=37.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhh
Q 002628 143 AEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELT 214 (899)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (899)
+|+-|-.|-+--++..+..-+++.+-.-||.+ -+|..+.++-.|.-..+++..+-||.|=.||-
T Consensus 23 ~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k--------~~t~~kek~~~Q~l~kt~larsKLeelCRelQ 86 (391)
T KOG1850|consen 23 VEEKIKKLAESEKDNAELKIKVLDYDKVLQVK--------DLTEKKEKRNNQILLKTELARSKLEELCRELQ 86 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566555555555555555555444443 24555666667766666777777777666654
No 327
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=72.90 E-value=39 Score=38.29 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=28.4
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (899)
...|...++.|+.+...|..+++-+..-+. +..++...|..|...|.+...+++
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~---~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKP---KLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345555666666666666666555543322 233444555555555555544444
No 328
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=72.68 E-value=2.4e+02 Score=34.58 Aligned_cols=170 Identities=18% Similarity=0.306 Sum_probs=91.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc----chhhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST----LKVECK 322 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 322 (899)
.+..-++-+++.|..|+..++.++..-.--.+-.+....++++...++.....+..++..-+.--|.+.. +.-.+.
T Consensus 310 ~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 310 ELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 5677788889999999999999988665444455566777777777777776666665554433332211 111111
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccch-
Q 002628 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSD- 401 (899)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 401 (899)
.+-+....+...|+...+.-..|-- +=+.++.++...+-.++..|+-.++.+-++ +-.....++..+.+.+...-
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~---~l~~~~~~l~~ikR~lek~nLPGlp~~y~~-~~~~~~~~i~~l~~~L~~~pi 465 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEARE---KLQKLKQKLREIKRRLEKSNLPGLPEDYLD-YFFDVSDEIEELSDELNQVPI 465 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCHHHHH-HHHHHHHHHHHHHHHHhcCCc
Confidence 2222222222222222222222211 113455566666666777777777655333 33445566666666665443
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q 002628 402 --EEIHSYVQLYQESVKEFQD 420 (899)
Q Consensus 402 --~~~~~~~~~~~~~~~~~~~ 420 (899)
.+|..++..=...|..+.+
T Consensus 466 nm~~v~~~l~~a~~~v~~L~~ 486 (560)
T PF06160_consen 466 NMDEVNKQLEEAEDDVETLEE 486 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444444444444
No 329
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=72.18 E-value=9.2 Score=34.55 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
.....++.|+.||-.||=.|-||...|...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~ 33 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKL 33 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999843
No 330
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=72.11 E-value=1.4e+02 Score=31.56 Aligned_cols=147 Identities=29% Similarity=0.362 Sum_probs=86.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhh--------------HHHhhhhchhhhhhhhhhhhh
Q 002628 136 LISMIRNAEKNILLLNEARVQALEDLHKILQ----EKEALQGEIN--------------ALEMRLAETDARIRVAAQEKI 197 (899)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 197 (899)
+|..++|...=|.-|-=-|.+|-+.+..+=. -|+.||.+.+ .|...|+-++ .
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAE----------t 71 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAE----------T 71 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHH----------H
Confidence 4566777777777777777777776655433 3445543332 3334443333 3
Q ss_pred hHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhh
Q 002628 198 HVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVK 277 (899)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (899)
+.-+||.||+-.|+-+.+.... .+.+ +-.. .+|..|.. .| -.++.
T Consensus 72 RCslLEKQLeyMRkmv~~ae~e----------------------r~~~--le~q-~~l~~e~~---~~-------~~~~~ 116 (178)
T PF14073_consen 72 RCSLLEKQLEYMRKMVESAEKE----------------------RNAV--LEQQ-VSLQRERQ---QD-------QSELQ 116 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------------------hhHH--HHHH-HHHHHHhc---cc-------hhhHH
Confidence 4559999999999887763111 0100 0111 11222211 11 22334
Q ss_pred hhhhHHHHHHhhhhhH-------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002628 278 DADERVVMLEMERSSL-------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (899)
Q Consensus 278 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (899)
..-+.+.+||+|+..| +..+++||.||..- +-..|-+.||.+.||--|+.
T Consensus 117 ~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE----------ehqRKlvQdkAaqLQt~lE~ 173 (178)
T PF14073_consen 117 AKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE----------EHQRKLVQDKAAQLQTGLET 173 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhHHH
Confidence 4557788888888775 57788999887543 23456678999999887764
No 331
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.98 E-value=26 Score=41.25 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=30.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADE 281 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (899)
+..+.+|+..+||+|+.|..+....+.++.+..+..+
T Consensus 391 ~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 391 LKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3356888999999999999999999999887776654
No 332
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.89 E-value=1.9e+02 Score=37.23 Aligned_cols=259 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred HhhhhhhHHHhhhhchhhhhhhhhhh---hhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccc
Q 002628 170 ALQGEINALEMRLAETDARIRVAAQE---KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIH 246 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (899)
+.|...|+|.--.-.-.-+.|..++- .+++..+-.|+++|+.+|......
T Consensus 300 n~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~--------------------------- 352 (913)
T KOG0244|consen 300 NAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGD--------------------------- 352 (913)
T ss_pred hhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh------------------hHHHHHHhhhhh----------------
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD------------------ERVVMLEMERSS---------------- 292 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~---------------- 292 (899)
.+..|+++|++||+.|..++..+-.++.+.-.+- ..+-+.-..-..
T Consensus 353 ~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 432 (913)
T KOG0244|consen 353 ELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKP 432 (913)
T ss_pred cchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcc
Q ss_pred ---------------------------------------HHhhHHHHHhhhhcchhhhhcccc-----------------
Q 002628 293 ---------------------------------------LESSLKELESKLSISQEDVAKLST----------------- 316 (899)
Q Consensus 293 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----------------- 316 (899)
|...|++++.++..-++-+-+...
T Consensus 433 ~~~v~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~ 512 (913)
T KOG0244|consen 433 LEPVDSGTEEIGMNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSG 512 (913)
T ss_pred ccccccccccccccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhh
Q ss_pred -chhhhhhHHHHHHHHHHHHHHHhh-hhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 002628 317 -LKVECKDLYEKVENLQGLLAKATK-QADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLE 394 (899)
Q Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (899)
|..|-.++...-+.|..-|...+. .+-.+=---++-++|+.++++|+.-|.+-.----...+.....-.+.+.+.-++
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k 592 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAK 592 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHH
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhh
Q 002628 395 ERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDG 455 (899)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~ 455 (899)
...-.--..+..-=.+++..-..--..+.-+|+..-++...++...+........|.+-+.
T Consensus 593 ~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~ 653 (913)
T KOG0244|consen 593 GQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTE 653 (913)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHH
No 333
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.35 E-value=27 Score=43.74 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHH
Q 002628 284 VMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLE 363 (899)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (899)
..|+.+.+.++..+++|..++....-.| ..+-.+...|+..++....+..+.-..-.+..+|++.++-.+
T Consensus 314 ~~l~~ql~~l~~~~~~l~~~~~~~hP~v----------~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~ 383 (726)
T PRK09841 314 VNVDNQLNELTFREAEISQLYKKDHPTY----------RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGR 383 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCchH----------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555443333222 234445566666666666666555555555666666666555
Q ss_pred H
Q 002628 364 E 364 (899)
Q Consensus 364 ~ 364 (899)
+
T Consensus 384 ~ 384 (726)
T PRK09841 384 A 384 (726)
T ss_pred H
Confidence 4
No 334
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.18 E-value=1.7e+02 Score=32.37 Aligned_cols=176 Identities=20% Similarity=0.325 Sum_probs=83.5
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh----hhhhhHHHHHHhhhhhHHh----hHHHHHhhhhcchhhhhccc-cchh
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSV----KDADERVVMLEMERSSLES----SLKELESKLSISQEDVAKLS-TLKV 319 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~ 319 (899)
...+......+..+..+|..|+..+++. .+-+.++..|..|...+.. .+++|.+++. ...-+ ... +-.
T Consensus 88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~-~~~~~-e~~~~~~- 164 (312)
T PF00038_consen 88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ-SSVTV-EVDQFRS- 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc-cccce-eeccccc-
Confidence 3444445666777777777777766643 2345567777777766543 4555665553 11111 111 111
Q ss_pred hhhhHHHHHHHHHHHHH----HHhhhhhhHHHHhhhhHHHHHHHHHHHHHH----hhhhhhhhchHHHHHHHHHHHHHHH
Q 002628 320 ECKDLYEKVENLQGLLA----KATKQADQAISVLQQNQELRKKVDKLEESL----DEANIYKLSSEKMQQYNELMQQKMK 391 (899)
Q Consensus 320 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (899)
.+|-..+..+++-.+ +....++.. .=.+-.+++..+.+-.+.+ ++..-.+.....++.-.+-++.+..
T Consensus 165 --~dL~~~L~eiR~~ye~~~~~~~~e~e~~--y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~ 240 (312)
T PF00038_consen 165 --SDLSAALREIRAQYEEIAQKNREELEEW--YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA 240 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccchhhhhhHHHHHHHHHhhhhhhhhhh--cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence 123333333333222 222222211 1112223333333322222 2222233333444444455666777
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002628 392 LLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (899)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (899)
.||.++..-.......++.|+..|.....-|..++.+-..
T Consensus 241 ~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 241 SLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 7777777766666666677777766666666666655444
No 335
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.28 E-value=94 Score=36.68 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 002628 324 LYEKVENLQGLLAKATKQAD 343 (899)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ 343 (899)
+...+..|+..++.+..+..
T Consensus 241 ~~~~i~~l~~~i~~~~~~~~ 260 (457)
T TIGR01000 241 IQQQIDQLQKSIASYQVQKA 260 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556666666665544433
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=70.25 E-value=1e+02 Score=35.16 Aligned_cols=51 Identities=27% Similarity=0.518 Sum_probs=37.6
Q ss_pred hhhHHhhhhccCCCCCCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002628 494 HEAISTFLKLTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (899)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~ 554 (899)
.+++..+...+.. -+|+=||. .| .-|=.+.+..|.+.|.++||.|-|++-.
T Consensus 38 ~~ll~~l~p~tG~-----a~viGITG--~P---GaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 38 RELLRALYPRTGN-----AHVIGITG--VP---GAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred HHHHHHHhhcCCC-----CcEEEecC--CC---CCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 4566655555444 37777875 34 3477889999999999999999999743
No 337
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.82 E-value=49 Score=33.03 Aligned_cols=42 Identities=38% Similarity=0.441 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH---HHHHHHHH
Q 002628 323 DLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK---VDKLEESL 366 (899)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 366 (899)
.+..+.....+-+.+..+.+.+- --+..+++++| +++|++.|
T Consensus 105 ~~~~~~k~~kee~~klk~~~~~~--~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQQR--KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444443333333 22456677764 56666555
No 338
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.76 E-value=39 Score=36.71 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=11.8
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhh
Q 002628 278 DADERVVMLEMERSSLESSLKELESK 303 (899)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (899)
.+.+++..+..|+..|...++.|+.+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e 64 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLERE 64 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 339
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=69.26 E-value=96 Score=33.67 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=54.2
Q ss_pred hhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 002628 290 RSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (899)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (899)
.-.|+-.++|+++.|..+-.-+.++-..+.. +..+++.++...++-.++|..| +...|.+|-+++=.=+.+|+
T Consensus 26 ~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~---~e~~~~~~~~~~~k~e~~A~~A--l~~g~E~LAr~al~~~~~le 98 (225)
T COG1842 26 EKMLEQAIRDMESELAKARQALAQAIARQKQ---LERKLEEAQARAEKLEEKAELA--LQAGNEDLAREALEEKQSLE 98 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHH
Confidence 3568888999999999998888888887774 8888888888888888888887 45555555555444333433
No 340
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.13 E-value=60 Score=36.96 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=36.8
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002628 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQA 345 (899)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (899)
--.+..+..+.+.|+..+.+...++..+.. ..+.....+...|--.++.-+.+++.+..+.++|
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~--~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLG--DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667777777666666654432 2344444455556666666666666555555554
No 341
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=68.04 E-value=1.5e+02 Score=30.58 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.3
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhh
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNS 275 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
-.+++.++.|+..|+.|++.|+++|.+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888899999888888766
No 342
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=67.71 E-value=88 Score=36.44 Aligned_cols=125 Identities=26% Similarity=0.322 Sum_probs=79.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (899)
.+..-+..++.+=..+.++|.....+...... ..+.+......-..|-..+.++.++-..++.-|.++ |++.
T Consensus 22 ~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~i------t~dI- 94 (383)
T PF04100_consen 22 NLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEI------TRDI- 94 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-
Confidence 33444455555555556666555444443222 234444444444556666666666666666665443 3333
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHH
Q 002628 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELM 386 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (899)
.-||.|.+..-.++.+|+.=|-|-.-|++|+..+.. .-|+....-++-.++++
T Consensus 95 -------k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~-r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 95 -------KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKK-RQYKEIASLLQAVKELL 147 (383)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 248999999999999999999999999999998875 45666665555444444
No 343
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=67.61 E-value=73 Score=35.39 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.4
Q ss_pred HCCCeEEEEeeCCC
Q 002628 543 KKGHLVEIVLPKYD 556 (899)
Q Consensus 543 k~GHeVtVItP~Y~ 556 (899)
+.|..|.|-+..|+
T Consensus 256 ~~G~~v~v~~~~~~ 269 (334)
T TIGR00998 256 RIGQPVTIRSDLYG 269 (334)
T ss_pred CCCCEEEEEEecCC
Confidence 56888888876655
No 344
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=66.95 E-value=6.7 Score=38.35 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=25.9
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~ 554 (899)
|||+++.. |.....--.+....|+.+.+++||+|.++.|.
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 79999964 44333333456678999999999999999875
No 345
>PRK10698 phage shock protein PspA; Provisional
Probab=66.94 E-value=1.3e+02 Score=32.33 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=67.6
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHH-HHHHHHHHhhh
Q 002628 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKK-VDKLEESLDEA 369 (899)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 369 (899)
..|+-.++|||..+......+...-..+ +.+-.+++.++...++-..+|..| +-..+.||-++ +.+=...-+.+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~---k~~er~~~~~~~~~~~~e~kA~~A--l~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEK---KQLTRRIEQAEAQQVEWQEKAELA--LRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777766665544433 346667777777777766677766 44456666554 11112222333
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002628 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (899)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (899)
.-++-..+..+...+.|++++..|+..+...-..=..++-.|+
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555556666666666666666665555555544443
No 346
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.68 E-value=3.4e+02 Score=35.45 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=53.8
Q ss_pred hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhh----------hHHHHh
Q 002628 280 DERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQAD----------QAISVL 349 (899)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 349 (899)
...+..=++.|......|++++++....+...+++.|.-- ++-++-..+..-|..++++.. |--..=
T Consensus 313 q~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~---~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~ 389 (1200)
T KOG0964|consen 313 QDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYN---SLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKE 389 (1200)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHH
Confidence 3444555667777888899999999988888888877544 466666666665655554322 111222
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 002628 350 QQNQELRKKVDKLEESLDEA 369 (899)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~ 369 (899)
..+--+|..+.+|...+...
T Consensus 390 eRDkwir~ei~~l~~~i~~~ 409 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDT 409 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33444666666666655443
No 347
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=66.59 E-value=87 Score=36.43 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhh
Q 002628 327 KVENLQGLLAKATKQADQAISVLQQ 351 (899)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (899)
.++.+++-+..+..+..++-.-+..
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~~ 252 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLNL 252 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555556666666666666555554
No 348
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.31 E-value=1.8e+02 Score=30.85 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 002628 326 EKVENLQGLLAKATKQA 342 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (899)
.|+.+|...|++...|.
T Consensus 150 kKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 150 KKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 349
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=66.31 E-value=57 Score=35.46 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=25.5
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhh-----hhhHHHHHHhhhhhHHhhHHHHHh
Q 002628 252 LDSLKTENLSLKNDIKVLKAELNSVKD-----ADERVVMLEMERSSLESSLKELES 302 (899)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 302 (899)
|..++.+...++.+.+.|+.++.+.-+ .-..+..+..|...++..+..|..
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 77 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRE 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555666665555544 333444444444444444444433
No 350
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.23 E-value=2.4e+02 Score=35.97 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhh-----------hhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 002628 351 QNQELRKKVDKLEESLDEANIY-----------KLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQ 409 (899)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (899)
++|+++.+..++++...+-.-+ +-.+-.+-..+....||.-.|-++++.-+++|...-+
T Consensus 807 ~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltE 876 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTE 876 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 4666666666666544322111 1112233445677788888888888888888876443
No 351
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=66.02 E-value=7.7 Score=40.94 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=29.1
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~ 557 (899)
||||+....- =.+.-+..|.++|.+.||+|.|++|....
T Consensus 1 M~ILlTNDDG-------i~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDG-------IDAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCC-------CCCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 8999887742 12334578999998888999999998664
No 352
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.95 E-value=2.9e+02 Score=33.02 Aligned_cols=97 Identities=20% Similarity=0.246 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhc------hHHHHHHHHHHHHHHHHHHHhh
Q 002628 324 LYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLS------SEKMQQYNELMQQKMKLLEERL 397 (899)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 397 (899)
+-+....+..+++.....-++....++.-++++..+.+..+.+.....---+ .+-..+-.+-+++++..+++-+
T Consensus 361 ~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~ 440 (503)
T KOG2273|consen 361 LAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELL 440 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444445555566666665555444332221111 1222223333445555555444
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 002628 398 QRSDEEIHSYVQLYQESVKEFQD 420 (899)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~ 420 (899)
....-++....+.....+++|..
T Consensus 441 ~~~~~~~~~i~~~~~~e~~~f~~ 463 (503)
T KOG2273|consen 441 ALKELELDEISERIRAELERFEE 463 (503)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555554
No 353
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.82 E-value=25 Score=41.14 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.8
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHh
Q 002628 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAEL 273 (899)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (899)
..+..+.+|+..+|++...|..+++.||.++
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999999999999999854
No 354
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.89 E-value=48 Score=38.40 Aligned_cols=147 Identities=21% Similarity=0.281 Sum_probs=79.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH--hhhhcchhhhhcc-ccchhhhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE--SKLSISQEDVAKL-STLKVECKD 323 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~ 323 (899)
++.+.|..|+-|=..|+++++..|..-...++....-..+...-..|...|..|. .-+.. .-+..+ ++-...++.
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~--~~~~~~~~~~~~~~~k 168 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGE--ETAQDLSDPQKALSKK 168 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHhhcccccch--hhhcccccchhhHHHH
Confidence 6788899999988888888888876544443222222334455555666666661 11111 111111 122233344
Q ss_pred HHHHHHHHHHHHHHHhhhh-------------h-hHHHHhhhhHHHHHHHHHHHHHHhhhh--hhhh----chHHHHHHH
Q 002628 324 LYEKVENLQGLLAKATKQA-------------D-QAISVLQQNQELRKKVDKLEESLDEAN--IYKL----SSEKMQQYN 383 (899)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~ 383 (899)
+-..++.++.--..+.... + .....+.+=-+|.+.+-.||..|.-.. ...+ .+-.|..-.
T Consensus 169 l~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l 248 (388)
T PF04912_consen 169 LLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPAL 248 (388)
T ss_pred HHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHH
Confidence 4444444431110000000 0 112346667789999999999998711 1122 234566677
Q ss_pred HHHHHHHHHHHH
Q 002628 384 ELMQQKMKLLEE 395 (899)
Q Consensus 384 ~~~~~~~~~~~~ 395 (899)
+.|++|+.+|..
T Consensus 249 ~~L~~~lslL~~ 260 (388)
T PF04912_consen 249 NELERQLSLLDP 260 (388)
T ss_pred HHHHHHHHhcCH
Confidence 889999999853
No 355
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.75 E-value=2.3e+02 Score=31.29 Aligned_cols=67 Identities=10% Similarity=0.408 Sum_probs=46.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHh
Q 002628 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHS 424 (899)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 424 (899)
|+.+.+..|-.++++++-|... .++ .+.+.+.++.+|++++..++.|..=++.++.. +..|..++.+
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k~-----~~d-----r~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~~~~~ 221 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALANK-----KAD-----RDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRSAFTD 221 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777766652 232 35888899999999999999988766666555 5556555554
No 356
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.98 E-value=47 Score=32.71 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=23.4
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002628 287 EMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (899)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (899)
+++|..+...|-.|-......++-..++..|+.+++++-.+-+++-.||..
T Consensus 43 ~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 43 EAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333334433333333333333333444444555555555555555555554
No 357
>PRK11519 tyrosine kinase; Provisional
Probab=63.82 E-value=50 Score=41.35 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=34.8
Q ss_pred HHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 002628 286 LEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEE 364 (899)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (899)
++.+.+.++..+.+|.+++......|- .+-++...|+..++....+....-..-++.++|+++++-.++
T Consensus 316 l~~ql~~l~~~~~~l~~~y~~~hP~v~----------~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~ 384 (719)
T PRK11519 316 IDAQLNELTFKEAEISKLYTKEHPAYR----------TLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQ 384 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHH----------HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554443333332 233444556666665555554444444555666666665554
No 358
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=63.23 E-value=12 Score=34.65 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=55.3
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
+...|++.+.+.=...+.|++..-..|....-++|.-..||+|...|.+.+...|.+|..
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999988764
No 359
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.19 E-value=36 Score=33.50 Aligned_cols=63 Identities=25% Similarity=0.373 Sum_probs=39.9
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS 307 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (899)
|+.+--|+..++.|+..|...=..+..++......-+.+....++...|+..+++|+.|...+
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555666666666666666666777777777777777776543
No 360
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.00 E-value=1.6e+02 Score=37.19 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHH
Q 002628 385 LMQQKMKLLEERLQRSDEEIHSYVQLY 411 (899)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (899)
.|+..+|..||+.+.--.++. .++.|
T Consensus 556 ~lr~elk~kee~~~~~e~~~~-~lr~~ 581 (697)
T PF09726_consen 556 KLRRELKQKEEQIRELESELQ-ELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 444455555555555555552 24444
No 361
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.70 E-value=1e+02 Score=31.87 Aligned_cols=95 Identities=24% Similarity=0.351 Sum_probs=62.6
Q ss_pred hhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHH
Q 002628 251 ELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVEN 330 (899)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (899)
=.+..|.|.-.++.+++.+|.++..+-+ .+-.|++.--.....|.+.-..|..-- +.|-+.-|+++..
T Consensus 21 I~E~~R~E~~~l~~EL~evk~~v~~~I~---evD~Le~~er~aR~rL~eVS~~f~~ys---------E~dik~AYe~A~~ 88 (159)
T PF05384_consen 21 IAEQARQEYERLRKELEEVKEEVSEVIE---EVDKLEKRERQARQRLAEVSRNFDRYS---------EEDIKEAYEEAHE 88 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccC---------HHHHHHHHHHHHH
Confidence 3456788888899999999988776554 455566666666677777666664322 2355689999999
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHh
Q 002628 331 LQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLD 367 (899)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (899)
+|..|.-...+- ..||.+-|.||-.|.
T Consensus 89 lQ~~L~~~re~E----------~qLr~rRD~LErrl~ 115 (159)
T PF05384_consen 89 LQVRLAMLRERE----------KQLRERRDELERRLR 115 (159)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 999887644333 334555555554443
No 362
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.66 E-value=30 Score=39.18 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=8.8
Q ss_pred CcHHHHHHHHHHHHHHCCC
Q 002628 528 GGLGDVVAGLGKALQKKGH 546 (899)
Q Consensus 528 GGLg~vV~~LArALqk~GH 546 (899)
.|.|..+.-|.--..+.|+
T Consensus 173 AA~Gq~~LLL~~la~~l~~ 191 (314)
T PF04111_consen 173 AAWGQTALLLQTLAKKLNF 191 (314)
T ss_dssp HHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3455555544444444453
No 363
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=61.44 E-value=10 Score=36.12 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002628 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (899)
Q Consensus 528 GGLg~vV~~LArALqk~GHeVtVItP~ 554 (899)
+|-=.=...|+++|+++||+|++.++.
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 343333456999999999999988864
No 364
>PF13166 AAA_13: AAA domain
Probab=60.83 E-value=3.5e+02 Score=33.50 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhc
Q 002628 355 LRKKVDKLEESLDEANIYKLS 375 (899)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (899)
+.++.++++..+....++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~ 409 (712)
T PF13166_consen 389 LKKEQNELKDKLWLHLIAKLK 409 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444
No 365
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.33 E-value=1.2e+02 Score=34.20 Aligned_cols=13 Identities=8% Similarity=-0.021 Sum_probs=8.6
Q ss_pred HCCCeEEEEeeCC
Q 002628 543 KKGHLVEIVLPKY 555 (899)
Q Consensus 543 k~GHeVtVItP~Y 555 (899)
+.|..|.|....+
T Consensus 260 ~~Gq~v~i~~~~~ 272 (346)
T PRK10476 260 RVGDCATVYSMID 272 (346)
T ss_pred CCCCEEEEEEecC
Confidence 5688888765433
No 366
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.27 E-value=2.9 Score=53.16 Aligned_cols=119 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHH
Q 002628 282 RVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDK 361 (899)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (899)
....+|++|..|+..++||-.+|..+-....+-+.-.+ ..|=.+|..|+.-|+.-.. .+.+..+.+-+
T Consensus 708 ~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i--~kLE~ri~eLE~~Le~E~r----------~~~~~~k~~rk 775 (859)
T PF01576_consen 708 HNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQI--AKLEARIRELEEELESEQR----------RRAEAQKQLRK 775 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHH--HHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 45568999999999999999999988877766543333 2455788899988887333 23344444444
Q ss_pred HHHHHhhhhh----hhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 002628 362 LEESLDEANI----YKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQ 412 (899)
Q Consensus 362 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (899)
++..+++... .+-..+.+|...+.|+.|+|.+...+...-++.......|.
T Consensus 776 ~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~~k~R 830 (859)
T PF01576_consen 776 LERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNLAKYR 830 (859)
T ss_dssp -------------------------------------------------------
T ss_pred HHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4444444422 23334557777889999999999999988888877766664
No 367
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.05 E-value=1.7e+02 Score=31.19 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=64.5
Q ss_pred hhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHH-HHHHHHHhhh
Q 002628 291 SSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKV-DKLEESLDEA 369 (899)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 369 (899)
..|+-.++||+..+..+...+...-..+. -+-.+++.++...++-.++|..| +-..+.||-+.. .+-...-+.+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k---~~e~~~~~~~~~~~~~~~~A~~A--l~~G~EdLAr~Al~~k~~~~~~~ 101 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKK---ELERRVSRLEAQVADWQEKAELA--LSKGREDLARAALIEKQKAQELA 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888777665544 35567777777777777777777 445566665543 2222223334
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHhhccc
Q 002628 370 NIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (899)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (899)
..++.+-+.++...+.|+.++..|+..++..
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555566666666666555544
No 368
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.96 E-value=65 Score=37.80 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHh
Q 002628 263 KNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKAT 339 (899)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (899)
.+.|..||++|. .++|++.-.--||+. |+||.+|+.|.=+.+..
T Consensus 275 q~Ei~~LKqeLa---~~EEK~~Yqs~eRaR------------------------------di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELA---SMEEKMAYQSYERAR------------------------------DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHH---hHHHHHHHHHHHHHh------------------------------HHHHHHHHHHHHHHHHH
Confidence 355667777664 456777777777753 67777777777666655
No 369
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.40 E-value=4.6e+02 Score=33.06 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=18.1
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 002628 314 LSTLKVECKDLYEKVENLQGLLAKATKQAD 343 (899)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (899)
++.++-+|+..=+++..+-..+.+-.++-+
T Consensus 167 ~s~~q~e~~~~~~~~~~~~s~l~~~eke~~ 196 (716)
T KOG4593|consen 167 LSELQWEVMLQEMRAKRLHSELQNEEKELD 196 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777666666665555443
No 370
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.84 E-value=26 Score=36.73 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhh
Q 002628 152 EARVQALEDLHKILQEKEALQGEINALEMRLAETDARIR 190 (899)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (899)
+.....-++|......+..++.++..+...|.+.++.+.
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~ 112 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS 112 (194)
T ss_dssp ---------------------------------------
T ss_pred cccccccccccccccccccccccccccccccchhhhhHH
Confidence 344455577778888888888888888877777766544
No 371
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=58.78 E-value=6.1e+02 Score=34.32 Aligned_cols=58 Identities=28% Similarity=0.249 Sum_probs=33.0
Q ss_pred cchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH----HHhhhhcchhhhhccccch
Q 002628 261 SLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE----LESKLSISQEDVAKLSTLK 318 (899)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 318 (899)
..--+|+.+..+|..--+..-.+..+-+|.+.+..++.. +|+..-..+++.-.++-++
T Consensus 799 ~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~ 860 (1294)
T KOG0962|consen 799 LREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLI 860 (1294)
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777555555666677777775555544 4444444444444444433
No 372
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.44 E-value=41 Score=36.29 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHH
Q 002628 325 YEKVENLQGLLAKATKQADQAISVLQQNQELRKKVD 360 (899)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (899)
..+|++|+...++-.+.-|. ++..|+.||++++
T Consensus 178 ~~~~~al~Kq~e~~~~Eydr---Llee~~~Lq~~i~ 210 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDR---LLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHcccHHHH---HHHHHHHHHHHHh
Confidence 34455555555443333332 4666777777664
No 373
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=58.35 E-value=3.2e+02 Score=31.77 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=9.9
Q ss_pred HCCCeEEEEeeCCC
Q 002628 543 KKGHLVEIVLPKYD 556 (899)
Q Consensus 543 k~GHeVtVItP~Y~ 556 (899)
+.|-.|.|....|+
T Consensus 309 ~~G~~v~v~~~~~~ 322 (421)
T TIGR03794 309 RPGMSVQITPSTVK 322 (421)
T ss_pred CCCCEEEEEEcccc
Confidence 57788888766554
No 374
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.22 E-value=35 Score=37.53 Aligned_cols=107 Identities=24% Similarity=0.364 Sum_probs=69.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhh--hhh--hchHHHHHHHHHHHHHHHHHHHhhc------------------------
Q 002628 347 SVLQQNQELRKKVDKLEESLDEAN--IYK--LSSEKMQQYNELMQQKMKLLEERLQ------------------------ 398 (899)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 398 (899)
+|-.|-.-+|.++-.||+.|.... +.+ --.+++|.=|.-|=+|++=|..-=.
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPG 162 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcccccCCCCcccCCCCCC
Confidence 467888889999999999886543 222 2345677777788888887754332
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccC
Q 002628 399 -RSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLS 463 (899)
Q Consensus 399 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~ 463 (899)
.+|.+...|=+.|.+++.=|..-= +.|.++. ...|++ |.++++.+=++||....+
T Consensus 163 ~~~d~e~~rY~~~YE~~l~PF~~F~---~~E~~R~-----~~~L~~--~eR~~ls~~r~vL~nr~~ 218 (248)
T PF08172_consen 163 GSSDVESNRYSSAYEESLNPFAAFR---KRERQRR-----YKRLSP--PERIFLSLTRFVLSNRTT 218 (248)
T ss_pred CCCchhHHHHHHHHHhccChHHHHh---HhhHHHH-----HhcCCh--HHHHHHHHHHHHhcChhh
Confidence 245667789999999965443310 1233332 345753 788888777787655543
No 375
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=58.07 E-value=1.4e+02 Score=35.26 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhhhhHHHhhhhchhhhhhhhh
Q 002628 153 ARVQALEDL-HKILQEKEALQGEINALEMRLAETDARIRVAA 193 (899)
Q Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (899)
++..+.... +-+..+.++|+.++...|++.+.-.++..+..
T Consensus 188 ~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~ 229 (458)
T COG3206 188 AQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTD 229 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 344444333 33445667888888888888888777776655
No 376
>PRK10869 recombination and repair protein; Provisional
Probab=57.87 E-value=4.3e+02 Score=32.32 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=29.4
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 002628 373 KLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQD 420 (899)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (899)
.+.++.|...+++|. .+..|+-+..++-+++..|.+..+..++++..
T Consensus 292 ~~dp~~l~~ie~Rl~-~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 292 DLDPNRLAELEQRLS-KQISLARKHHVSPEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 455666666666654 45666777777777777776666665554443
No 377
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.26 E-value=16 Score=44.37 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=33.0
Q ss_pred cccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 002628 243 SEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLS 305 (899)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (899)
..|-.|..|...|+.+++.||..|+.|+.+|.......+.-....+|-.-++..+..||.+|.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555556666666666655555444444444444445555555554443
No 378
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=57.05 E-value=15 Score=44.05 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=30.6
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCC
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKY 555 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y 555 (899)
-||+.+.+.+ .+.--.+...+++.|+++||+|+|++|..
T Consensus 21 ~kIl~~~P~~-----~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPTP-----AYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCCC-----CCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4688776532 34567788889999999999999999863
No 379
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=56.99 E-value=5.9e+02 Score=33.65 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=4.9
Q ss_pred HHHHHHHhhh
Q 002628 206 LQKLQHELTH 215 (899)
Q Consensus 206 ~~~~~~~~~~ 215 (899)
++.||..|..
T Consensus 493 ~~~Lr~~L~~ 502 (1047)
T PRK10246 493 LEAQRAQLQA 502 (1047)
T ss_pred HHHHHHhCCC
Confidence 3345555544
No 380
>PRK09343 prefoldin subunit beta; Provisional
Probab=56.41 E-value=64 Score=31.54 Aligned_cols=50 Identities=32% Similarity=0.377 Sum_probs=32.7
Q ss_pred hccchhHHHHHHHHhhhhhh-hhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 002628 259 NLSLKNDIKVLKAELNSVKD-ADERVVMLEMERSSLESSLKELESKLSISQ 308 (899)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (899)
+|.++.|...++..+..-.+ .+.++-.|||....|+..+++++++|..+.
T Consensus 62 ~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 62 NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666654433 345677777777777777777777765543
No 381
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=56.32 E-value=2.5e+02 Score=33.61 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=53.1
Q ss_pred HHHhhhhcchhhhhccccchhh----hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 002628 299 ELESKLSISQEDVAKLSTLKVE----CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKL 374 (899)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (899)
--|++|+.|-+ ++||.|++| -.-|-+.-..||.+|..++.-+.-|=-+| -.|.+.=+.+.+.+-
T Consensus 381 G~~~rF~~sla--aEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEll----------vrl~eaeea~~~a~~ 448 (488)
T PF06548_consen 381 GAESRFINSLA--AEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELL----------VRLREAEEAASVAQE 448 (488)
T ss_pred cchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH----------HHHHhHHHHHHHHHH
Confidence 34566655543 577888774 33455566778888876554433332222 234455455566666
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q 002628 375 SSEKMQQYNELMQQKMKLLEERL 397 (899)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~ 397 (899)
..-..+|.|+.+-++|.-|....
T Consensus 449 r~~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 449 RAMDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888877776543
No 382
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=55.72 E-value=80 Score=39.89 Aligned_cols=74 Identities=18% Similarity=0.028 Sum_probs=55.1
Q ss_pred CCcEEEEEecCCCccCHHHHHHHHHHhhcc------CcEEEEEcC---CCccCccH--------------H---------
Q 002628 805 RKPLVGCITRLVPQKGVHLIRHAIYRTLEL------GGQFILLGS---SPVPHIQV--------------Y--------- 852 (899)
Q Consensus 805 ~kpLVgfVGRL~~qKGvdlLIeAi~~Lle~------dvqLVIVG~---Gp~~~Lqk--------------e--------- 852 (899)
++.+++.+-|+..-||+..=+.|+.+.+.. .+.++.+.. ++...+++ +
T Consensus 275 g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV 354 (732)
T KOG1050|consen 275 GKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPV 354 (732)
T ss_pred CCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceE
Confidence 668899999999999999888999988752 333433332 22211110 0
Q ss_pred -------------HHHHhcCeeEEcCCcCcChHHHHHHc
Q 002628 853 -------------PILLSSFSFLRKHIFNICNLYIKLGQ 878 (899)
Q Consensus 853 -------------~iyaaADIfVlPS~~EpFGLV~LEAM 878 (899)
.+++.+|++++.|.-++..++.+|..
T Consensus 355 ~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i 393 (732)
T KOG1050|consen 355 HSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYI 393 (732)
T ss_pred EEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHH
Confidence 88999999999999999999999876
No 383
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=55.19 E-value=1.6e+02 Score=26.48 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhh------ccc
Q 002628 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERL------QRS 400 (899)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 400 (899)
.++.++..++...+.-.+......+..++++++|.|-.. +.+....++.+++.++... ..+
T Consensus 15 ~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~-------------i~~~~~~~~~~lk~l~~~~~~~~~~~~~ 81 (103)
T PF00804_consen 15 DIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDE-------------IKQLFQKIKKRLKQLSKDNEDSEGEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 333333444443333333333333223466666655432 3344455666666666663 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002628 401 DEEIHSYVQLYQESVKEFQDTL 422 (899)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (899)
..+..-.-..|..-...|++++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 4444444444555577787754
No 384
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=54.04 E-value=30 Score=39.17 Aligned_cols=74 Identities=11% Similarity=0.097 Sum_probs=43.6
Q ss_pred cEEEEEecCCCccCHHHHHHHHHHhhccCcEEEE-EcCCCcc-Cc-------------cHHHHHHhcCeeEEcCCcCcCh
Q 002628 807 PLVGCITRLVPQKGVHLIRHAIYRTLELGGQFIL-LGSSPVP-HI-------------QVYPILLSSFSFLRKHIFNICN 871 (899)
Q Consensus 807 pLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqLVI-VG~Gp~~-~L-------------qke~iyaaADIfVlPS~~EpFG 871 (899)
++++..|.+..... ..+..++..+.+.++++++ .|.+... .+ ....+|+.||++|..+-+
T Consensus 227 ~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~---- 301 (392)
T TIGR01426 227 VVLISLGTVFNNQP-SFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKADAFITHGGM---- 301 (392)
T ss_pred EEEEecCccCCCCH-HHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhCCEEEECCCc----
Confidence 45667788644332 2333333333344666654 5655321 11 112889999999987643
Q ss_pred HHHHHHccCCcccc
Q 002628 872 LYIKLGQGGDLTVN 885 (899)
Q Consensus 872 LV~LEAMg~gl~Vi 885 (899)
.|.+||+.+|+|++
T Consensus 302 ~t~~Eal~~G~P~v 315 (392)
T TIGR01426 302 NSTMEALFNGVPMV 315 (392)
T ss_pred hHHHHHHHhCCCEE
Confidence 37899999997763
No 385
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.62 E-value=4.7e+02 Score=31.43 Aligned_cols=48 Identities=29% Similarity=0.255 Sum_probs=29.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELE 301 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (899)
+--+|++++.++|-..-+-....|+.+.+ +..||.+|+.+++..+++|
T Consensus 228 se~ee~eel~eq~eeneel~ae~kqh~v~-------~~ales~~sq~~e~~selE 275 (521)
T KOG1937|consen 228 SEEEEVEELTEQNEENEELQAEYKQHLVE-------YKALESKRSQFEEQNSELE 275 (521)
T ss_pred ccchhHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHH
Confidence 44566677777666554433444444443 4556777777777777777
No 386
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=53.61 E-value=5.5e+02 Score=32.24 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=71.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHH-HHHHHH
Q 002628 134 DNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQL-QKLQHE 212 (899)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 212 (899)
-.+..-++.++|++.---|-++.+||++...++|+-+.|+. ++++|+---. |..-|-+-..++.+-=- .+++.+
T Consensus 6 ~~~~~~~~d~~~~~~~~~q~gL~~le~~~~~~~era~~ek~---y~~~l~~l~~--k~~~q~~~~d~v~~~~~~q~~~~~ 80 (640)
T KOG3565|consen 6 RSVLRELKDAFKATEQSTQNGLDWLERIVQFLKERADKEKE---YEEKLRSLCK--KFEFQSKSGDEVAESVSGQPLFSE 80 (640)
T ss_pred HHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHhcchhHHHHH---HHHHHHHhhh--HhhcCCcccchHHHHhccCcchhH
Confidence 34566778899999999999999999999999999888765 4555543322 22222222222210000 011111
Q ss_pred hhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhh
Q 002628 213 LTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDAD 280 (899)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (899)
+.+ ..+.+...++.|+.||++.|..+++....+.+++...
T Consensus 81 ~lq----------------------------~~~~i~~r~e~l~~e~~~v~~~~~~t~k~~~~l~~~~ 120 (640)
T KOG3565|consen 81 LLQ----------------------------RAQQIATRLEILKIEDEEVKKSLEATLKTSLDLVAQR 120 (640)
T ss_pred HHH----------------------------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 111 1346677788888899999988888877766655543
No 387
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=53.51 E-value=2.3e+02 Score=30.63 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=76.7
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhh-hhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSV-KDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLY 325 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (899)
++...++.+..+.-.+-+.-..+-..|..+ .+.......+++.|..+...-..++.++..+-..+.|-. .+|+ ..+
T Consensus 62 s~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK-~~Y~--~~c 138 (234)
T cd07652 62 SFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAK-ARYD--SLA 138 (234)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHH--HHH
Confidence 334444444444443333333333333222 122334445556666555555555555555554444422 2222 344
Q ss_pred HHHHHHHHH--HHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHH
Q 002628 326 EKVENLQGL--LAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEE 403 (899)
Q Consensus 326 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (899)
+..|.++.. =.+..--........++-.++++|++..+..... .+-+....+-+-|+-.+-+-++.|-+-+..+|.-
T Consensus 139 ~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~-~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~ 217 (234)
T cd07652 139 DDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYAS-KVNAAQALRQELLSRHRPEAVKDLFDLILEIDAA 217 (234)
T ss_pred HHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 444443321 0000000112233445556888888876443321 1222222222223445666677777777788888
Q ss_pred HHHHHHHHHH
Q 002628 404 IHSYVQLYQE 413 (899)
Q Consensus 404 ~~~~~~~~~~ 413 (899)
+.-+++.|+-
T Consensus 218 l~~~~~~~~~ 227 (234)
T cd07652 218 LRLQYQKYAL 227 (234)
T ss_pred HHHHHHHHhh
Confidence 8888888863
No 388
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=53.48 E-value=3.9e+02 Score=30.42 Aligned_cols=56 Identities=32% Similarity=0.360 Sum_probs=36.4
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh-HHhhHHHHHhhh
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-LESSLKELESKL 304 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 304 (899)
+.-++.|.+|=..|.+++..+..++.+.+..--..+.--.++.. +..++.+++..+
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l 62 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSL 62 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888877766666655554432 333344444443
No 389
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=53.23 E-value=2.4e+02 Score=28.00 Aligned_cols=9 Identities=44% Similarity=0.501 Sum_probs=3.2
Q ss_pred HHHHHHHhh
Q 002628 389 KMKLLEERL 397 (899)
Q Consensus 389 ~~~~~~~~~ 397 (899)
+...+.+.+
T Consensus 167 ~~~~l~~~l 175 (202)
T PF01442_consen 167 KAEELKETL 175 (202)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 390
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=53.19 E-value=6.2e+02 Score=32.69 Aligned_cols=91 Identities=25% Similarity=0.272 Sum_probs=47.9
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHH---HHHHH----HHHHHHHHHHHHh--------hhhhhHHHh-----hhhchhhh
Q 002628 129 STSQLDNLISMIRNAEKNILLLNEA---RVQAL----EDLHKILQEKEAL--------QGEINALEM-----RLAETDAR 188 (899)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~ 188 (899)
-..-....-+|+-|..+|.-.--+. |-.-+ ++++++-.++|+- |.+..+.|+ -..|..++
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888888876544332 22223 3455555444432 233333333 23344555
Q ss_pred hhhhhhhhhhHhhhHHHHHHHH-HHhhhcccC
Q 002628 189 IRVAAQEKIHVELLEDQLQKLQ-HELTHRGVS 219 (899)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 219 (899)
-...-++.|+...+.++++.+. .|+-.+|..
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k 652 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGK 652 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5566666677777777776665 444444433
No 391
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=53.15 E-value=3.9e+02 Score=30.40 Aligned_cols=179 Identities=22% Similarity=0.340 Sum_probs=88.2
Q ss_pred hhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhccc------CcccchhhhccCCCCcccccccCCccc
Q 002628 172 QGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGV------SEHSELDVFANQNEPANEDLVLNNSEI 245 (899)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (899)
.|++|+|.+.-+-...++. .+|-.-+-||.++|-.|.-|+..-- +..+++.+-..... |--+
T Consensus 62 ~~QLn~L~aENt~L~SkLe---~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~r---------dEw~ 129 (305)
T PF14915_consen 62 NGQLNVLKAENTMLNSKLE---KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRAR---------DEWV 129 (305)
T ss_pred hhhHHHHHHHHHHHhHHHH---HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHh---------hHHH
Confidence 4555555544443333333 3455667788899999888876411 11111111110000 0000
Q ss_pred c---hhhHhhhhhhhhhccchhH-------HHHHHHHhhhhhhh----hhHHHHHHhhhhhHHhhHHHHHhhhhcchhhh
Q 002628 246 H---SFSKELDSLKTENLSLKND-------IKVLKAELNSVKDA----DERVVMLEMERSSLESSLKELESKLSISQEDV 311 (899)
Q Consensus 246 ~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (899)
| -+.-+++.||..|-.|-.. +..|+.+|..+.++ .=-+-.+.++.+.-...++|||......++.|
T Consensus 130 ~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv 209 (305)
T PF14915_consen 130 RLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKV 209 (305)
T ss_pred HHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 0111233344444444332 23344444333322 11233445566667777889999888888888
Q ss_pred hccccchhhhhhHHHHHHH-------HHHHHHHHhhhhhh-HHHHhhhhHHHHHHHHHHHHH
Q 002628 312 AKLSTLKVECKDLYEKVEN-------LQGLLAKATKQADQ-AISVLQQNQELRKKVDKLEES 365 (899)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 365 (899)
++.-. +.|| +-|++.. |+..|+.|-+.++. --+|..-...+++-|.+|.+-
T Consensus 210 ~k~~~-Kqes--~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae 268 (305)
T PF14915_consen 210 NKYIG-KQES--LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAE 268 (305)
T ss_pred HHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 87544 4443 3343333 55677777777763 223444334455555555543
No 392
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=53.12 E-value=3.2e+02 Score=29.34 Aligned_cols=186 Identities=18% Similarity=0.299 Sum_probs=95.7
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhc-cccchhhhhhHHHHHHHHHHHHHHHhh
Q 002628 262 LKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAK-LSTLKVECKDLYEKVENLQGLLAKATK 340 (899)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (899)
|+..+...-++.....-|++.+-.--+.|+.|.+-.+.|+.+-...-..+++ +...+-.|| .|...++.+.+
T Consensus 20 lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K-------~l~~~i~~~~~ 92 (215)
T PF07083_consen 20 LKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIK-------ELIAPIDEASD 92 (215)
T ss_pred HHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-------HHHHHHHHHHH
Confidence 4556666666666777788888888899999988888888765544333322 333333444 44444555444
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHhhhh-hhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 002628 341 QADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQ 419 (899)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (899)
..+.-+-...+ +.-..|.+.+.+-+++.. -|.+....+... ...+-.----.+..--++|.+.+..-....++..
T Consensus 93 ~I~~~ik~~Ee-~~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~---~~~~wlnks~s~kk~~eei~~~i~~~~~~~~~~~ 168 (215)
T PF07083_consen 93 KIDEQIKEFEE-KEKEEKREKIKEYFEEMAEEYGVDPEPFERI---IKPKWLNKSYSLKKIEEEIDDQIDKIKQDLEEIK 168 (215)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChHHHhhh---cchHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 344556677766665432 223333322211 1111100000111122344454444444444444
Q ss_pred HHHHhhHhhhhhcccCCCCCCCChHHHHHHHHHhhhhhhhcccChHHH
Q 002628 420 DTLHSLKEESKKRAVHEPVDDMPWEFWSRLLLIIDGWLLEKKLSTSEA 467 (899)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~~d~~~~~~~~~~~~a 467 (899)
.....+.+.-.. -+||++-|-++|- +|..+...+..-++
T Consensus 169 ~~~~~i~~~A~~-------~~l~~~~yi~~l~--~g~~l~eil~~i~~ 207 (215)
T PF07083_consen 169 AAKQAIEEKAEE-------YGLPADPYIRMLD--YGKTLAEILKQIKE 207 (215)
T ss_pred HHHHHHHHHHHH-------cCCCcHHHHHHHH--cCCCHHHHHHHHHH
Confidence 433333333222 5699999998884 45765555444443
No 393
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=52.28 E-value=1.3e+02 Score=34.73 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.1
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 002628 528 GGLGDVVAGLGKALQKKGHLVEIVLP 553 (899)
Q Consensus 528 GGLg~vV~~LArALqk~GHeVtVItP 553 (899)
||+|.+=..+|++|.+.||+|+++.+
T Consensus 105 GG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 105 GGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred cCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 77788888999999999999999865
No 394
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=52.00 E-value=1.5e+02 Score=32.95 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=44.0
Q ss_pred hhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccc---------hhhhhhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 002628 278 DADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTL---------KVECKDLYEKVENLQGLLAKATKQADQAISV 348 (899)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (899)
.....+..+..+++.|+..++.+|.++..++.++..--.- --.|+...++++..+.-|+.+.++.+.++.-
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 211 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAA 211 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455666677777777777777777777666554322111 1456666777777776666665555554444
Q ss_pred hh
Q 002628 349 LQ 350 (899)
Q Consensus 349 ~~ 350 (899)
++
T Consensus 212 l~ 213 (301)
T PF14362_consen 212 LD 213 (301)
T ss_pred HH
Confidence 43
No 395
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=51.83 E-value=4.3e+02 Score=33.89 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=49.3
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHHHH
Q 002628 258 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENLQG 333 (899)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (899)
.+.-|.+-|+.+..-++.+-.....+..+.-+++.++..+.-.++.-... +.+......++.+-..+-..-++|..
T Consensus 531 gkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~ 610 (769)
T PF05911_consen 531 GKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEM 610 (769)
T ss_pred chhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444454444444444444445555544444433321111 22222222222222233223344445
Q ss_pred HHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh
Q 002628 334 LLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN 370 (899)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (899)
-|.+++.+.+..-. |-+++..++..|+..|+.++
T Consensus 611 ~L~~~~d~lE~~~~---qL~E~E~~L~eLq~eL~~~k 644 (769)
T PF05911_consen 611 ELASCQDQLESLKN---QLKESEQKLEELQSELESAK 644 (769)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 55566555554433 33566666666666666444
No 396
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=51.78 E-value=12 Score=46.02 Aligned_cols=158 Identities=22% Similarity=0.341 Sum_probs=0.0
Q ss_pred CcccchhhHhhhhhhhhhc-------cchhHHHHHHHHhhhhhh--hhhHHHHH----HhhhhhHHhhHHHHHhhhhcch
Q 002628 242 NSEIHSFSKELDSLKTENL-------SLKNDIKVLKAELNSVKD--ADERVVML----EMERSSLESSLKELESKLSISQ 308 (899)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 308 (899)
...+..|..+++.|++|-. .+++.|..+-.+|..-.+ ..+..+.- +....+-.+.|..|+..+..-+
T Consensus 141 ~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~ 220 (619)
T PF03999_consen 141 LEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELE 220 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 3455666666666666554 455555555555544332 12221111 1122222333333333332222
Q ss_pred h----hhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHH-HHHHHHHHHHHhhhhhhhhchHHHHHHH
Q 002628 309 E----DVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQEL-RKKVDKLEESLDEANIYKLSSEKMQQYN 383 (899)
Q Consensus 309 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (899)
+ -..++..|...|..||++.+.=+.--+. .+..+..+ .+.++.+++-|+.- ..+...+|..+.
T Consensus 221 ~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~----------F~~~~~~ls~~~i~~l~~El~RL--~~lK~~~lk~~I 288 (619)
T PF03999_consen 221 EEKEEREEKLQELREKIEELWNRLDVPEEEREA----------FLEENSGLSLDTIEALEEELERL--EELKKQNLKEFI 288 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH----------HhhccCcchHHHHHHHHHHHHHH--HHHHHHhHHHHH
Confidence 1 2234555556666666665433222111 12222222 22334444444332 234455667777
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHH
Q 002628 384 ELMQQKMKLLEERLQRSDEEIHSYVQLY 411 (899)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (899)
+-.+++++.+=+.+.-|+++.....-.|
T Consensus 289 ~~~R~ei~elWd~~~~s~eer~~F~~~~ 316 (619)
T PF03999_consen 289 EKKRQEIEELWDKCHYSEEERQAFTPFY 316 (619)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 7788888888777777777776644433
No 397
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.81 E-value=2.6e+02 Score=29.57 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=51.0
Q ss_pred ccchhHHHHHHHHhhhhhh----hhhHHHHHHhhhhhHHhhHHHHHhhhhcc----hhhhhccccchhhhhhHHHHHHHH
Q 002628 260 LSLKNDIKVLKAELNSVKD----ADERVVMLEMERSSLESSLKELESKLSIS----QEDVAKLSTLKVECKDLYEKVENL 331 (899)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 331 (899)
..|+.-|..+...+..+.. .--.-..++++...++..+.+++.+...| ++|.++---.+. ..+-+.++.|
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k--~~~e~~~~~l 103 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRK--ADLEEQAERL 103 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 3444444444444433332 22334467888888888888888886555 556654332222 2456777888
Q ss_pred HHHHHHHhhhhhhHH
Q 002628 332 QGLLAKATKQADQAI 346 (899)
Q Consensus 332 ~~~~~~~~~~~~~~~ 346 (899)
+..++.++.++++.-
T Consensus 104 ~~~~~~~~~~~~~l~ 118 (221)
T PF04012_consen 104 EQQLDQAEAQVEKLK 118 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777776653
No 398
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=50.79 E-value=1.3e+02 Score=37.28 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhhchhhhh
Q 002628 159 EDLHKILQEKEALQGEINALEMRLAETDARI 189 (899)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (899)
++++++..|-.+|+.+++.|+.++++...++
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544433
No 399
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.71 E-value=50 Score=33.68 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=33.3
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHH
Q 002628 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQG 333 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (899)
..+.+..|+++.+.|++.|+.|.+.++..+- ...+..|+.||..+-++++.|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556667777777788887777765542 23445556666666666666554
No 400
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.63 E-value=1.5e+02 Score=33.67 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=77.1
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhh-h---HH
Q 002628 279 ADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQ-N---QE 354 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ 354 (899)
+.+.+.-++++-..++..|++.|.+|...+..-.-+++ ..+-...-+-+..|+..+..+..+..+.-..... | +.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~-~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDP-KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 45556666667777777777777777777664433333 2223345566777777777776666655545444 3 34
Q ss_pred HHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHH
Q 002628 355 LRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQD 420 (899)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 420 (899)
++.+++.|++.+.+-.- ++.....++++.... ....|+-+.+-......+.++.|++. +++.+.
T Consensus 247 l~~~i~~l~~~i~~e~~-~i~~~~~~~l~~~~~-~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~ 311 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRN-QLSGGLGDSLNEQTA-DYQRLVLQNELAQQQLKAALTSLQQTRVEADRQ 311 (362)
T ss_pred HHHHHHHHHHHHHHHHH-HhhcCCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777776654221 110100112232222 34555556666666666777777765 444444
No 401
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=50.46 E-value=78 Score=39.11 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=60.8
Q ss_pred HHHHHHhhhhhhhhch---HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcccCCC
Q 002628 361 KLEESLDEANIYKLSS---EKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRAVHEP 437 (899)
Q Consensus 361 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (899)
++.+-|+..+..+++- ..-++.-+.++++++.++..++..++++.++.+.|...+.+..+.|...+.-.+-.
T Consensus 192 ~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 266 (646)
T PRK05771 192 EVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEAL----- 266 (646)
T ss_pred HHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444455555544432 22355567788888889999999999999988887777665555555433322221
Q ss_pred CCCCChHHHHHHHHHhhhhhhhcccChHHHHHHHHHHHhcCC
Q 002628 438 VDDMPWEFWSRLLLIIDGWLLEKKLSTSEAKLLREMVWKRNG 479 (899)
Q Consensus 438 ~~~~~~~~~~~lll~~d~~~~~~~~~~~~a~~l~~~~~~~~~ 479 (899)
.++...=+..+++|-+..++...+++.+.+...
T Consensus 267 ---------~~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~ 299 (646)
T PRK05771 267 ---------SKFLKTDKTFAIEGWVPEDRVKKLKELIDKATG 299 (646)
T ss_pred ---------HhhhcCCcEEEEEEEeehhHHHHHHHHHHHhcC
Confidence 111111122333444566677778887765543
No 402
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=50.33 E-value=2.4e+02 Score=29.11 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=40.5
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYE 326 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
..-+.|+++-.+|...+.+++.|+..-... ....++|+..-..+ |.++... +| .++-|+++|+.
T Consensus 33 ~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L------~~q~~~ek~~r~~~----e~~l~~~-Ed-----~~~~e~k~L~~ 96 (158)
T PF09744_consen 33 RVLELLESLASRNQEHEVELELLREDNEQL------ETQYEREKELRKQA----EEELLEL-ED-----QWRQERKDLQS 96 (158)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHH----HHHHHHH-HH-----HHHHHHHHHHH
Confidence 445667777777777666666666532221 12223333332222 2222211 23 34678889999
Q ss_pred HHHHHHHHHHH
Q 002628 327 KVENLQGLLAK 337 (899)
Q Consensus 327 ~~~~~~~~~~~ 337 (899)
+|+.|+..-..
T Consensus 97 ~v~~Le~e~r~ 107 (158)
T PF09744_consen 97 QVEQLEEENRQ 107 (158)
T ss_pred HHHHHHHHHHH
Confidence 99998875433
No 403
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.31 E-value=2.6e+02 Score=32.78 Aligned_cols=134 Identities=31% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhh-hhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCccc
Q 002628 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-EKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANE 236 (899)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (899)
+++|+.|+.----|+..+..|+.++-.-=.=|--+-| |+.+.+.|||||..+. ||-|
T Consensus 266 leeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlt-eLqQ--------------------- 323 (455)
T KOG3850|consen 266 LEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLT-ELQQ--------------------- 323 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHH---------------------
Q ss_pred ccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 002628 237 DLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLST 316 (899)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (899)
|.|.-||++|... +||+.-.--||+ ||++.-+..-|.-++||.-
T Consensus 324 ---------------------------nEi~nLKqElasm---eervaYQsyERa------RdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 324 ---------------------------NEIANLKQELASM---EERVAYQSYERA------RDIQEALESCQTRISKLEL 367 (455)
T ss_pred ---------------------------HHHHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhH-HHHHHH--HHHHHHHHhhhhhhHHHHh
Q 002628 317 LKVECKDL-YEKVEN--LQGLLAKATKQADQAISVL 349 (899)
Q Consensus 317 ~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~ 349 (899)
.+.+-.-. -|-++| -+.||.++-|-.=.-..||
T Consensus 368 ~qq~qqv~Q~e~~~na~a~~llgk~iNiiLalm~Vl 403 (455)
T KOG3850|consen 368 QQQQQQVVQLEGLENAVARRLLGKFINIILALMTVL 403 (455)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
No 404
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=49.70 E-value=2.7e+02 Score=27.59 Aligned_cols=17 Identities=18% Similarity=0.308 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhhhhhh
Q 002628 265 DIKVLKAELNSVKDADE 281 (899)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ 281 (899)
|+..++..+...+...+
T Consensus 31 d~~~~~~~l~~~~~~~~ 47 (213)
T cd00176 31 DLESVEALLKKHEALEA 47 (213)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 55555555544444333
No 405
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=49.52 E-value=4.2e+02 Score=29.67 Aligned_cols=149 Identities=30% Similarity=0.359 Sum_probs=81.8
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh----------hh---hHHHHHHhhhhh---HHhhHHHHHhhhhcch
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD----------AD---ERVVMLEMERSS---LESSLKELESKLSISQ 308 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 308 (899)
|-++...+.+|++|.-.|..|+..-.+-..+|.. -+ -|+--|+|=-++ |-+-|.-.|.-|....
T Consensus 95 i~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~ 174 (264)
T PF08687_consen 95 IESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLD 174 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3467777888888777777777654443333321 11 122223332222 3444444444444443
Q ss_pred hhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHH
Q 002628 309 EDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQ 388 (899)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (899)
+|.. ..|=..|-+|-.-|.. |-+.| ++|..-+|+-+..+.+.-...++.+.++.|.-+++-
T Consensus 175 ~~~~-----~~Er~~L~~k~~~L~~-------Q~edA-------k~LKe~~drRe~~v~~iL~~~L~~eq~~dy~~fv~m 235 (264)
T PF08687_consen 175 EDAD-----PEERESLLEKRRLLQR-------QLEDA-------KELKENLDRRERVVSEILARYLSEEQLADYRHFVKM 235 (264)
T ss_dssp ----------HHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred ccch-----hHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3321 1222233344333333 33333 567777888888888888888999999999999988
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 002628 389 KMKLLEERLQRSDEEIHSYVQLYQESVKE 417 (899)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (899)
|.+++-+. .+|---|+++++-++.
T Consensus 236 Ka~Ll~eq-----reLddkiklgeEQL~~ 259 (264)
T PF08687_consen 236 KAALLIEQ-----RELDDKIKLGEEQLEA 259 (264)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HhHHHHHHhhHHHHHH
Confidence 88887664 4455555555554443
No 406
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=49.46 E-value=2e+02 Score=32.86 Aligned_cols=68 Identities=12% Similarity=-0.059 Sum_probs=37.5
Q ss_pred cCHHHHHHHHHHhhcc-CcEEEEEcCCCcc---CccH-----------------H--HHHHhcCeeEEcCCcCcChHHHH
Q 002628 819 KGVHLIRHAIYRTLEL-GGQFILLGSSPVP---HIQV-----------------Y--PILLSSFSFLRKHIFNICNLYIK 875 (899)
Q Consensus 819 KGvdlLIeAi~~Lle~-dvqLVIVG~Gp~~---~Lqk-----------------e--~iyaaADIfVlPS~~EpFGLV~L 875 (899)
.....+.+++..+.+. ++++++.....++ .+.. + .+++.|+++|-=| | .+.
T Consensus 197 ~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~ 270 (346)
T PF02350_consen 197 ERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQ 270 (346)
T ss_dssp --HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESS-----H-HHH
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHH
Confidence 4567777788777764 8888887763221 0100 0 6677777776654 5 455
Q ss_pred -HHccCCccc--ccCCCccc
Q 002628 876 -LGQGGDLTV--NNNCEPWL 892 (899)
Q Consensus 876 -EAMg~gl~V--idgv~~~l 892 (899)
||..+|.|| +.+.+.+-
T Consensus 271 eEa~~lg~P~v~iR~~geRq 290 (346)
T PF02350_consen 271 EEAPSLGKPVVNIRDSGERQ 290 (346)
T ss_dssp HHGGGGT--EEECSSS-S-H
T ss_pred HHHHHhCCeEEEecCCCCCH
Confidence 999888777 44444443
No 407
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=48.59 E-value=4.7e+02 Score=30.37 Aligned_cols=251 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred ccCCCccccccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhHHH--hhhhchhhhhhhhhhh
Q 002628 121 NCDGGEELSTSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQE---KEALQGEINALE--MRLAETDARIRVAAQE 195 (899)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 195 (899)
|...+.+..++--.+|+...-=.|--+ +||-..++.|.+..+. .|+--|+.||-. |-|..--+-++--..+
T Consensus 2 NLeeeqgvnd~Sk~ELl~LfS~lEGEl----eARd~VIdaLKraqhkd~fiE~kYGK~NinDP~~ALqRDf~~l~Ek~D~ 77 (561)
T KOG1103|consen 2 NLEEEQGVNDFSKDELLKLFSFLEGEL----EARDDVIDALKRAQHKDLFIEAKYGKLNINDPFAALQRDFAILGEKIDE 77 (561)
T ss_pred cchhhccccccchHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHhccccc
Q ss_pred hhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh
Q 002628 196 KIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS 275 (899)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
.--+..-|.+|.-|..-+++ -.+..-+.++.-...=+.-..+.|+=-..-......
T Consensus 78 EK~p~ct~spl~iL~~mM~q------------------------cKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqd 133 (561)
T KOG1103|consen 78 EKIPQCTESPLDILDKMMAQ------------------------CKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQD 133 (561)
T ss_pred cccceeccChhHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred hhhhhhHHHHHHhhhhh--------------HHhhHHHHHhhhhcchhhhhcccc-chhhhhhHHHHHHHHHHHHHHHhh
Q 002628 276 VKDADERVVMLEMERSS--------------LESSLKELESKLSISQEDVAKLST-LKVECKDLYEKVENLQGLLAKATK 340 (899)
Q Consensus 276 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 340 (899)
.++.|.-..+|||||.. .|..-+.||++|..-..---.++. |-.||| ..|-+|..
T Consensus 134 aaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcK----------ka~~KaaE 203 (561)
T KOG1103|consen 134 AAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECK----------KALLKAAE 203 (561)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHh---------hhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 002628 341 QADQAISVLQQNQELRKKVDKLEESLD---------EANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQL 410 (899)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (899)
.-.+|-.+.-+++.=...+.++++++. ||.+.|+-+| +....+.|+-++...|.|-.--.+|+.|.-+.
T Consensus 204 egqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~E-fdiEre~LRAel~ree~r~K~lKeEmeSLkei 281 (561)
T KOG1103|consen 204 EGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEE-FDIEREFLRAELEREEKRQKMLKEEMESLKEI 281 (561)
T ss_pred hhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=48.51 E-value=1.9e+02 Score=27.05 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHH
Q 002628 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEI 404 (899)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (899)
+.|.+++|.||.++..-.-..-....+..-...|+..-..|++.|+.+....
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence 4566777777777766544444445555555666666777777777766664
No 409
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=48.29 E-value=36 Score=33.50 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=30.9
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCe-EEEEee
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHL-VEIVLP 553 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHe-VtVItP 553 (899)
|||+++... +|+ .+-.++-..++|+++.+.||+ |.|+..
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 788877764 676 456678899999999999999 588763
No 410
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=48.07 E-value=4.7e+02 Score=29.85 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=53.4
Q ss_pred cccchhHHHHHHHhhhh-h----HHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHh
Q 002628 129 STSQLDNLISMIRNAEK-N----ILLLNEA---RVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVE 200 (899)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (899)
.+..+-|.||-++..-- | .-++-+. ...+.+..+++|.|-.+|-.|+..+.. | -++|.++|..-.
T Consensus 56 ~s~dfsD~i~k~~r~~y~~~s~~yEm~G~G~~~kETp~qK~qRll~Ev~eL~~eve~ik~-----d--k~~a~Eek~t~~ 128 (371)
T KOG3958|consen 56 TSSDFSDRIGKKRRHGYGNNSYVYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKT-----D--KESATEEKLTPV 128 (371)
T ss_pred CcccchHHHHhhhhhccCCCcceeeeeccCcCcccCHHHHHHHHHHHHHHHHHHHHHHhh-----c--hhhhhhhhcchH
Confidence 34556677776553211 1 1112221 345677888888888888777665543 3 457889999999
Q ss_pred hhHHHHHHHHHHhhh
Q 002628 201 LLEDQLQKLQHELTH 215 (899)
Q Consensus 201 ~~~~~~~~~~~~~~~ 215 (899)
++-.+|+.|+++|-.
T Consensus 129 l~A~vla~lkk~l~a 143 (371)
T KOG3958|consen 129 LLAKVLAALKKQLVA 143 (371)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999865
No 411
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=48.06 E-value=1.3e+02 Score=35.03 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHC--CCeEEEEee
Q 002628 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK--GHLVEIVLP 553 (899)
Q Consensus 510 ~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~--GHeVtVItP 553 (899)
+.|||++.+..-.. . |-=+....+|++|++. |.+|.+|+-
T Consensus 8 ~~~Ri~~Yshd~~G---l-GHlrR~~~Ia~aLv~d~~~~~Il~IsG 49 (400)
T COG4671 8 KRPRILFYSHDLLG---L-GHLRRALRIAHALVEDYLGFDILIISG 49 (400)
T ss_pred ccceEEEEehhhcc---c-hHHHHHHHHHHHHhhcccCceEEEEeC
Confidence 45699999886422 1 3334556689999999 999999973
No 412
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.91 E-value=4.9e+02 Score=30.04 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=29.5
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeCCCC
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDC 557 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~Y~~ 557 (899)
|||++=... +|. ..+...+-..|.++||+|.|-+..++.
T Consensus 1 mkVwiDI~n-~~h------vhfFk~lI~elekkG~ev~iT~rd~~~ 39 (346)
T COG1817 1 MKVWIDIGN-PPH------VHFFKNLIWELEKKGHEVLITCRDFGV 39 (346)
T ss_pred CeEEEEcCC-cch------hhHHHHHHHHHHhCCeEEEEEEeecCc
Confidence 567665443 444 457788999999999999998887764
No 413
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.89 E-value=3.3e+02 Score=30.65 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=79.8
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhh--------hhcc---c
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQED--------VAKL---S 315 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~ 315 (899)
+|..-+..-|+||..|.-|.++|..++.+....-+-++..+- ..++...-+-++-+++.+. ++++ .
T Consensus 87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeA---q~ese~~a~aseNaarneeelqwrrdeanfic~~E 163 (389)
T KOG4687|consen 87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEA---QFESEKMAGASENAARNEEELQWRRDEANFICAHE 163 (389)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHH---HHHHHHhcccccccccchHHHHhhHHHHHHHHHHH
Confidence 567778889999999999999999888776654443333221 1111111111222222222 1111 1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh-hhhh-----chHHHHHHHHHHHHH
Q 002628 316 TLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN-IYKL-----SSEKMQQYNELMQQK 389 (899)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~ 389 (899)
.||--|+.|- -.|.++++- --.++-.....+.|+-.|--.|--|- .-|- ..+-+--.|..|+.|
T Consensus 164 gLkak~a~La---fDLkamide-------KEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhak 233 (389)
T KOG4687|consen 164 GLKAKCAGLA---FDLKAMIDE-------KEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAK 233 (389)
T ss_pred HHHHHhhhhh---hHHHHHhch-------HHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHH
Confidence 1222222220 012233322 12245567788889988876664332 2221 223344467888888
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHH
Q 002628 390 MKLLEERLQRSDEEIHSYVQLYQESVK 416 (899)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (899)
+|--++-+ +.|.--|-+|..-.+
T Consensus 234 lkiadeEl----EliK~siaKYKqM~d 256 (389)
T KOG4687|consen 234 LKIADEEL----ELIKMSIAKYKQMAD 256 (389)
T ss_pred hcccHHHH----HHHHHHHHHHHHHHH
Confidence 88776654 345555556655433
No 414
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.71 E-value=7.1e+02 Score=31.82 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=41.0
Q ss_pred HhcCCCchhhhhhhhhh--hhhhhHHhh-------hhccCCCCC-CCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHC
Q 002628 475 WKRNGRIRDAYMECKEK--NEHEAISTF-------LKLTSSSIS-SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKK 544 (899)
Q Consensus 475 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~-~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~ 544 (899)
|..+......|.+..+. .+.+.|.-+ .-|+.+... |....+++ .|.. .-|--.+......++++.
T Consensus 975 ~r~dgs~iety~dS~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIl-DEAF----~R~s~~~a~~~i~~f~~f 1049 (1104)
T COG4913 975 EREDGSVIETYTDSQGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVIL-DEAF----SRSSHVVAGRIIAAFREF 1049 (1104)
T ss_pred eccCCceeeeeecCCCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEee-chhh----ccCCHHHHHHHHHHHHHc
Confidence 44455555666653222 123333222 234444443 44555544 3321 234455666777899999
Q ss_pred CCeEEEEeeC
Q 002628 545 GHLVEIVLPK 554 (899)
Q Consensus 545 GHeVtVItP~ 554 (899)
|....++||-
T Consensus 1050 glh~v~iTPl 1059 (1104)
T COG4913 1050 GLHAVFITPL 1059 (1104)
T ss_pred CceEEEechH
Confidence 9998899884
No 415
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=47.49 E-value=3.9e+02 Score=28.69 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=24.9
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhh-hh-hhhhhHHHHHHhhhhhHHhhHH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELN-SV-KDADERVVMLEMERSSLESSLK 298 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 298 (899)
++...++.++.|.-.+=+.=..+-..|. .| .....+...++++|..++....
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~ 110 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHME 110 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555555444444443 22 2334444444555544433333
No 416
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=47.40 E-value=2.1e+02 Score=31.96 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=9.9
Q ss_pred HHHCCCeEEEEeeCCC
Q 002628 541 LQKKGHLVEIVLPKYD 556 (899)
Q Consensus 541 Lqk~GHeVtVItP~Y~ 556 (899)
..+.|-.|.|..+.|+
T Consensus 253 ~i~~Gq~v~v~~~~~~ 268 (331)
T PRK03598 253 QAQPGRKVLLYTDGRP 268 (331)
T ss_pred hCCCCCEEEEEEcCCC
Confidence 4456777777665543
No 417
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=46.86 E-value=2.3e+02 Score=33.30 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 002628 327 KVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHS 406 (899)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (899)
+++..+..|+.+..+..+++ -..=+..+.+++.+...|+. +++.+ --+..+|++..++.|+..+ +..
T Consensus 306 ~l~~~~q~L~~l~~rL~~a~--~~~L~~~~~~L~~l~~rL~~-----lsP~~---~L~r~~qrL~~L~~rL~~a---~~~ 372 (438)
T PRK00286 306 LLAQQQQRLDRLQQRLQRAL--ERRLRLAKQRLERLSQRLQQ-----QNPQR---RIERAQQRLEQLEQRLRRA---MRR 372 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh-----cCHHH---HHHHHHHHHHHHHHHHHHH---HHH
Confidence 44555555555555555552 22333445666666666653 23322 2345667777777776533 555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002628 407 YVQLYQESVKEFQDTLHS 424 (899)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (899)
.++.++..++.-...|+.
T Consensus 373 ~L~~~~~rL~~l~~rL~~ 390 (438)
T PRK00286 373 QLKRKRQRLEALAQQLEA 390 (438)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555444443
No 418
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.86 E-value=3.8e+02 Score=28.47 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHhhHhhhhhc
Q 002628 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSLKEESKKR 432 (899)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 432 (899)
+.+.++.+..+.+|...-..|..=+..+... |.+|++.|..+-+..-+.
T Consensus 135 ~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ 184 (198)
T cd07630 135 EQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKN 184 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999999888887 999999998876654443
No 419
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.34 E-value=2.1e+02 Score=32.11 Aligned_cols=148 Identities=22% Similarity=0.284 Sum_probs=88.8
Q ss_pred hhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhh--hhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 002628 143 AEKNILLLNEA-RVQALEDLHKILQEKEALQGE--INALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (899)
Q Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (899)
.-.|..|=|+. |-.-|+-|=.|. +.||.. -+.=+.+|.+.++-++--...++.|.-|...|+.+...--..
T Consensus 112 IAsNc~lkS~~~RS~yLe~Lc~II---qeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~--- 185 (269)
T PF05278_consen 112 IASNCKLKSQQFRSYYLECLCDII---QELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIY--- 185 (269)
T ss_pred HhhccccCcHHHHHHHHHHHHHHH---HHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH---
Confidence 34566666643 444455444444 445542 255577888888888888889999999988888765432211
Q ss_pred cccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHH
Q 002628 220 EHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKE 299 (899)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (899)
........|-...+.+++..+.+|... .+.+...|+|-+.+...+.+
T Consensus 186 ------------------------------~~~~~~e~eke~~~r~l~~~~~ELe~~---~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 186 ------------------------------DQHETREEEKEEKDRKLELKKEELEEL---EEELKQKEKEVKEIKERITE 232 (269)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 111222222223344566666555443 45566677777777777777
Q ss_pred HHhhhhcchhhhhccccchhhhhhHHHHHHHHH
Q 002628 300 LESKLSISQEDVAKLSTLKVECKDLYEKVENLQ 332 (899)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (899)
+=.+|..+....++++.-= ..++-||++++
T Consensus 233 ~~~rl~~l~~~~~~l~k~~---~~~~sKV~kf~ 262 (269)
T PF05278_consen 233 MKGRLGELEMESTRLSKTI---KSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc
Confidence 7777777666666554322 23677777764
No 420
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.00 E-value=72 Score=29.39 Aligned_cols=47 Identities=30% Similarity=0.365 Sum_probs=26.2
Q ss_pred ccchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhhc
Q 002628 260 LSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLSI 306 (899)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (899)
+.++.|...+...|.. .+..++.+-.|+++...++..+++++.+|-+
T Consensus 54 ~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 54 MFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444432 2334455666666667777777777766654
No 421
>PRK10884 SH3 domain-containing protein; Provisional
Probab=45.93 E-value=3.5e+02 Score=29.09 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHh
Q 002628 270 KAELNSVKDADERVVMLEMERSSLESSLKELES 302 (899)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (899)
...|+.....-+++-.||+|-+.|++.|.++..
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777777777777777766666553
No 422
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.76 E-value=1.7e+02 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=19.5
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHH
Q 002628 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKM 379 (899)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (899)
.|...++|++++.+|++.|+ ...+..++.+
T Consensus 108 ~l~~l~~l~~~~~~l~~el~--~~~~~Dp~~i 137 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE--KYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhcCHHHH
Confidence 45566677777777777777 3344556655
No 423
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=45.40 E-value=9.5e+02 Score=32.62 Aligned_cols=11 Identities=36% Similarity=0.401 Sum_probs=5.3
Q ss_pred hhHHHHHHHhh
Q 002628 133 LDNLISMIRNA 143 (899)
Q Consensus 133 ~~~~~~~~~~~ 143 (899)
..+|..||..+
T Consensus 693 ~~~l~~~i~s~ 703 (1294)
T KOG0962|consen 693 IKKLESKIDSA 703 (1294)
T ss_pred HHHHHHHHhcc
Confidence 34455555443
No 424
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=45.40 E-value=8e+02 Score=31.72 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=54.5
Q ss_pred hhhHhhhHHHHHHHHHHhhhc-----ccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHH
Q 002628 196 KIHVELLEDQLQKLQHELTHR-----GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLK 270 (899)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (899)
-|.--|++.+++.||+|+.+- .-.||....++..+..|.++- |- -.|+=++.+.+|- ..|+
T Consensus 1084 ei~k~L~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiek----Dm---caselfneheeeS-------~ifd 1149 (1424)
T KOG4572|consen 1084 EIDKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEK----DM---CASELFNEHEEES-------GIFD 1149 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccch----hH---HHHHHHHHhhhhc-------chHH
Confidence 345557888999999998764 233333333444443333221 11 2233334333333 3467
Q ss_pred HHhhhhhhhhhHHHHHHh---hhhh-----HHhhHHHHHhh
Q 002628 271 AELNSVKDADERVVMLEM---ERSS-----LESSLKELESK 303 (899)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~ 303 (899)
++++.++..-+--+..+| |.+. ++++|+++|..
T Consensus 1150 aa~nKiakiHe~AfEieknlkeQaielank~dpeLraiead 1190 (1424)
T KOG4572|consen 1150 AAGNKIAKIHEIAFEIEKNLKEQAIELANKGDPELRAIEAD 1190 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHhh
Confidence 788888888888887777 4332 56777777754
No 425
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.35 E-value=4.8e+02 Score=29.14 Aligned_cols=173 Identities=27% Similarity=0.307 Sum_probs=90.8
Q ss_pred HhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHH
Q 002628 250 KELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVE 329 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (899)
+|-.--|.=-+.+|...+.++.+|.++.+. ...+|+| |++.|.++|.+...++.++-.|. +|-..+-||.|
T Consensus 13 eE~~ywk~l~~~ykq~f~~~reEl~EFQeg---SrE~Eae---lesqL~q~etrnrdl~t~nqrl~---~E~e~~Kek~e 83 (333)
T KOG1853|consen 13 EEDQYWKLLHHEYKQHFLQMREELNEFQEG---SREIEAE---LESQLDQLETRNRDLETRNQRLT---TEQERNKEKQE 83 (333)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333344444577888888889999888754 4455554 78888888888888888877654 33334445544
Q ss_pred HHHHHHHHHhhhhhhHHHHhhh----hHHHHHHHHHHHHH---H---hhhhhhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 002628 330 NLQGLLAKATKQADQAISVLQQ----NQELRKKVDKLEES---L---DEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (899)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (899)
.-.....+ |.++----|.| -..||+-|.+||.. | +.|.||- .+++.|--..--++..-||.-|++
T Consensus 84 ~q~~q~y~---q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~s--leDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 84 DQRVQFYQ---QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS--LEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 43332222 21111111111 12344555555431 2 3455553 344444334444566667766654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhcc--cCCCCCCCChH
Q 002628 400 SDEEIHSYVQLYQESVKEFQDTLHSLKEESKKRA--VHEPVDDMPWE 444 (899)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 444 (899)
-... ..||.+..+--.+|..|-..+. -+-|--.||++
T Consensus 159 ke~l--------lesvqRLkdEardlrqelavr~kq~E~pR~~~Pss 197 (333)
T KOG1853|consen 159 KEVL--------LESVQRLKDEARDLRQELAVRTKQTERPRIVEPSS 197 (333)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCccc
Confidence 3332 3455555555444444433332 23344557743
No 426
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.31 E-value=78 Score=34.85 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=20.2
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHhhhhhhH
Q 002628 315 STLKVECKDLYEKVENLQGLLAKATKQADQA 345 (899)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (899)
.+|+-|-..||||+-=||..=.+++...+.+
T Consensus 117 ~~L~~DN~kLYEKiRylqSY~~~~~~~~~~~ 147 (248)
T PF08172_consen 117 ESLRADNVKLYEKIRYLQSYNNKGSGSSSSA 147 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCccc
Confidence 3445555569999999998876544443333
No 427
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.92 E-value=7.6e+02 Score=31.33 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002628 380 QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (899)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (899)
|..+..+|++.+..|+.+..--+-++|.-...+.-|.....++..|...+.+
T Consensus 386 qea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~R 437 (739)
T PF07111_consen 386 QEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNR 437 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456667777777777766555556554443333355555555555555544
No 428
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.57 E-value=1.2e+02 Score=31.82 Aligned_cols=94 Identities=24% Similarity=0.316 Sum_probs=57.8
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKV 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (899)
++|+..|..+|.-|-+ .+..|.++++..++.|++|-|-|+.-+- --++..|+-||+..-+++
T Consensus 78 ~eel~~ld~~i~~l~e-----------------k~q~l~~t~s~veaEik~L~s~Lt~eem-Qe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTE-----------------KVQSLQQTCSYVEAEIKELSSALTTEEM-QEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHH
Confidence 5666666655544433 3445567788889999999988765321 123455788999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 002628 329 ENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (899)
+++.+-..-.|...-.+ |-...|+-.+.-.|.
T Consensus 140 ~~~k~g~~~vtpedk~~--v~~~y~~~~~~wrk~ 171 (201)
T KOG4603|consen 140 KNIKAGTNHVTPEDKEQ--VYREYQKYCKEWRKR 171 (201)
T ss_pred HHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHH
Confidence 99877555555444444 444444444443333
No 429
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.15 E-value=75 Score=29.46 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002628 358 KVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR-SDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (899)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (899)
|+||+.+-++.+. +|+ .-+|.|+|.||.+... -|.+|...|+-+-.+.+++...|...+.
T Consensus 2 KleKi~~eieK~k------~Ki----ae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 2 KLEKIRAEIEKTK------EKI----AELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred hHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 6777777776654 455 5678889999887764 5789999999999999999999988765
No 430
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=43.89 E-value=30 Score=36.52 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEee
Q 002628 528 GGLGDVVAGLGKALQKKGHLVEIVLP 553 (899)
Q Consensus 528 GGLg~vV~~LArALqk~GHeVtVItP 553 (899)
||.|.+-..+++.|.+.||+|.++..
T Consensus 7 GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 7 GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 66777888899999999999988754
No 431
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=43.72 E-value=2.3e+02 Score=32.27 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHhhhcc----cCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhh
Q 002628 201 LLEDQLQKLQHELTHRG----VSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELN 274 (899)
Q Consensus 201 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (899)
.||++-..||.|.++-. .-|.....+ +++ ....+..-+..|-.|++||..-.+||+...+.|..|-+++.
T Consensus 171 ~LEeEN~~LR~Ea~~L~~et~~~EekEqqL-v~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 171 SLEEENEQLRSEASQLKTETDTYEEKEQQL-VLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccHHHHHH-HHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777887766542 112221111 111 11222233556667777777777777777777777766543
No 432
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=43.70 E-value=32 Score=40.44 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEee
Q 002628 508 ISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLP 553 (899)
Q Consensus 508 ~~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP 553 (899)
++++|||+.. ||.|.+=..|++.|.++||+|.++..
T Consensus 117 ~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 4677998754 88888889999999999999998753
No 433
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.58 E-value=5.4e+02 Score=31.18 Aligned_cols=46 Identities=11% Similarity=0.311 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 002628 383 NELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHSLKEESKK 431 (899)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (899)
|+.+.+|-+.+-+ .+.+.|.+.++=..+.++.|+..++.+-+++.+
T Consensus 120 ~~ile~k~~~f~~---~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~ 165 (475)
T PRK10361 120 NRIFEHSNRRVDE---QNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ 165 (475)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432 234456777888888999999988887766544
No 434
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.55 E-value=4.9e+02 Score=28.74 Aligned_cols=45 Identities=9% Similarity=0.313 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HHHHHHHHHhhHhh
Q 002628 384 ELMQQKMKLLEERLQRSDEEIHSYVQLYQES-VKEFQDTLHSLKEE 428 (899)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 428 (899)
+.|..+++.+++.++.-++++..=+..++.- -.||.++|..+-..
T Consensus 177 ~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~ 222 (240)
T cd07667 177 PKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADK 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777766666665 56777777665443
No 435
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.36 E-value=1.2e+02 Score=28.91 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=26.6
Q ss_pred ccchhHHHHHHHHhhh-hhhhhhHHHHHHhhhhhHHhhHHHHHhhhh
Q 002628 260 LSLKNDIKVLKAELNS-VKDADERVVMLEMERSSLESSLKELESKLS 305 (899)
Q Consensus 260 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (899)
+.++.|....+..|.. ....+.++..|++.-..|+..+++++++|.
T Consensus 59 vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 59 LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555665555555433 223356666666666666666666666654
No 436
>PLN02778 3,5-epimerase/4-reductase
Probab=43.35 E-value=35 Score=37.62 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEE
Q 002628 506 SSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 551 (899)
Q Consensus 506 ~~~~~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVI 551 (899)
.+....|||+.. ||.|..=..|++.|.++||+|++.
T Consensus 4 ~~~~~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 4 TAGSATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 344556898855 777777788999999999999754
No 437
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=43.30 E-value=3.4e+02 Score=34.23 Aligned_cols=207 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred CccccccchhHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhh
Q 002628 125 GEELSTSQLDNLISMI------RNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIH 198 (899)
Q Consensus 125 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (899)
..++..+.||.+|+-+ .|.+=-+-++|..-..-.+++-.+.+...=|+.-+++|=|||++-..|- ...+-
T Consensus 159 ~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra----~~~fp 234 (683)
T PF08580_consen 159 RHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRA----ESIFP 234 (683)
T ss_pred ccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH----HHhhH
Q ss_pred HhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhh
Q 002628 199 VELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKD 278 (899)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (899)
+-.- .|-.--..|-+.=..|..|++.||.||.+.+=
T Consensus 235 ~a~e--------------------------------------------~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW 270 (683)
T PF08580_consen 235 SACE--------------------------------------------ELEDRYERLEKKWKKLEKEAESLKKELIEDRW 270 (683)
T ss_pred HHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcc---hhhhhccccchhhhhhHHHHHHHHHHHH--HHHhhhhhhHHHHhhhhH
Q 002628 279 ADERVVMLEMERSSLESSLKELESKLSIS---QEDVAKLSTLKVECKDLYEKVENLQGLL--AKATKQADQAISVLQQNQ 353 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 353 (899)
..=|...-..=..-++ +|.++-.|+..+ ...+..-..+..++...+.|+.+--.++ +..-.=.+.. +.-.-|.
T Consensus 271 ~~vFr~l~~q~~~m~e-sver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~g-v~~r~n~ 348 (683)
T PF08580_consen 271 NIVFRNLGRQAQKMCE-SVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKG-VADRLNA 348 (683)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhh-HHHHhhH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhchHHHHHH
Q 002628 354 ELRKKVDKLEESLDEANIYKLSSEKMQQY 382 (899)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (899)
||+.|.+.|+ ..-.+..-+..+.+.||+
T Consensus 349 ~L~~rW~~L~-~~~d~~L~~~~~~~~q~l 376 (683)
T PF08580_consen 349 DLAQRWLELK-EDMDSLLEDSQSSSSQQL 376 (683)
T ss_pred HHHHHHHHHH-HHHHHhhhhccccccccc
No 438
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.06 E-value=8.5e+02 Score=31.37 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=15.3
Q ss_pred cchhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 002628 131 SQLDNLISMIRNAEKNILLLNEARVQALEDLH 162 (899)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (899)
.-+||=- =.|-||--+-|. -|.+||++-+
T Consensus 312 ~TFEDKr--keNy~kGqaELe-rRRq~leeqq 340 (1118)
T KOG1029|consen 312 VTFEDKR--KENYEKGQAELE-RRRQALEEQQ 340 (1118)
T ss_pred cchhhhh--HHhHhhhhHHHH-HHHHHHHHHH
Confidence 3455532 246666555554 3556776544
No 439
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.93 E-value=7.1e+02 Score=31.46 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCCchhhhhhhhhhhhhh
Q 002628 466 EAKLLREMVWKRNGRIRDAYMECKEKNEHE 495 (899)
Q Consensus 466 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (899)
+-+.|+..+.+-..+|+ +||-+|.....+
T Consensus 301 ~r~kL~N~i~eLkGnIR-V~CRvRP~~~~e 329 (670)
T KOG0239|consen 301 ERRKLHNEILELKGNIR-VFCRVRPLLPSE 329 (670)
T ss_pred HHHHHHHHHHHhhcCce-EEEEecCCCccc
Confidence 44677777777777777 556555544443
No 440
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.91 E-value=6.5e+02 Score=29.97 Aligned_cols=42 Identities=33% Similarity=0.432 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhh
Q 002628 157 ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIH 198 (899)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (899)
|-||-+|...=---...+||.|..+|++++.+|+--..++-|
T Consensus 146 a~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 146 AKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 334434433323334678999999999999999876656555
No 441
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.83 E-value=4.8e+02 Score=28.48 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHh
Q 002628 353 QELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDTLHS 424 (899)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (899)
-+...|++.|.+.|.+|.-----.+.+-..|..--+.++.=-++++.-..++..+|.....++.+=.+.|+.
T Consensus 188 ~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~~ 259 (264)
T PF06008_consen 188 NDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQE 259 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777665433333333333333333333333444455555555555555555554444443
No 442
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=42.52 E-value=4.2e+02 Score=27.70 Aligned_cols=95 Identities=18% Similarity=0.331 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHH-Hhhh-hHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccc
Q 002628 323 DLYEKVENLQGLLAKATKQADQAIS-VLQQ-NQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRS 400 (899)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (899)
++|+--.+-=.+...++|+.+++-+ +|-| +.-+-+.|+.|+..+..- +.. .+++.++.+|.|-. ..
T Consensus 12 a~w~~~~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~--~~~-------~s~~~~~~vk~L~k---~~ 79 (165)
T PF09602_consen 12 AFWKQWSQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQF--KRE-------FSDLYEEYVKQLRK---AT 79 (165)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHH---HH
Confidence 5788888888888888999988743 3333 333677788888888764 333 33455666666533 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 002628 401 DEEIHSYVQLYQESVKEFQDTLHSLKEES 429 (899)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (899)
.+.+..+|..|+.-.+|-..-++.|--+.
T Consensus 80 ~~~l~d~inE~t~k~~El~~~i~el~~~~ 108 (165)
T PF09602_consen 80 GNSLNDSINEWTDKLNELSAKIQELLLSP 108 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 56666666667766666665555544333
No 443
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=42.26 E-value=6.5e+02 Score=30.31 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=17.1
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHH
Q 002628 343 DQAISVLQQNQELRKKVDKLEES 365 (899)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~ 365 (899)
+.|..+-|.|..+.+++|||+..
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~k 470 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKRK 470 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888889888764
No 444
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=41.91 E-value=18 Score=32.94 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=22.3
Q ss_pred hhhhhhhhccchhHHHHHHHHhhhhhh
Q 002628 252 LDSLKTENLSLKNDIKVLKAELNSVKD 278 (899)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (899)
++.|.+||..||..|+.|+++|...+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999988877543
No 445
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=41.76 E-value=8.1e+02 Score=30.74 Aligned_cols=104 Identities=27% Similarity=0.354 Sum_probs=57.7
Q ss_pred hHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHhhhh----hh----HHHhhhhchh--hhhhhhhhhhhhHh
Q 002628 134 DNLISMIRNAEKNILLLNEARV---QALEDLHKILQEKEALQGE----IN----ALEMRLAETD--ARIRVAAQEKIHVE 200 (899)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~--~~~~~~~~~~~~~~ 200 (899)
++|...++++|.=..+-+.|+. +|++|.-.|+.| .+-.. -| +|.-+.+++| +..+.+++
T Consensus 150 ~sl~~~l~~te~~T~~A~sa~n~~I~alndh~~~~ke--s~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk~aR------ 221 (657)
T KOG1854|consen 150 ESLKKLLQSTENITKLATSAKNVAIGALNDHVNILKE--SLDDSKEAGWNSVTTALKLPESAADKDATAEKSAR------ 221 (657)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHhhhccchhHHHHHHhHHHHhhhhhhHHHHHH------
Confidence 4577778888877777777775 455555555543 22222 01 3333334443 44444443
Q ss_pred hhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhh
Q 002628 201 LLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE 258 (899)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (899)
..+++|+.+-.--+-.+ .-++.|+++. ..+.+|.|+-+++.++.|
T Consensus 222 ---n~~e~L~~i~n~g~~~e-------Taq~nPlI~~---t~~ta~kLs~qldnv~~e 266 (657)
T KOG1854|consen 222 ---NAQEKLVTIANLGETGE-------TAQANPLITA---TKDTAHKLSNQLDNVKRE 266 (657)
T ss_pred ---HHHHHHHHHHHhcccch-------hhhcccchHH---HHHHHHHHHHHHHHHHHH
Confidence 23455554432221111 2455677654 356789999999999887
No 446
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=41.70 E-value=3.5e+02 Score=33.15 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=14.4
Q ss_pred HHHHhhhhhhHHHhhhhchhhhh
Q 002628 167 EKEALQGEINALEMRLAETDARI 189 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~ 189 (899)
++|+|.+.|..|..|+.++.+++
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV 30 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEV 30 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666664444
No 447
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.67 E-value=3.5e+02 Score=29.38 Aligned_cols=8 Identities=13% Similarity=0.729 Sum_probs=4.8
Q ss_pred CCceEEEE
Q 002628 639 KQPDIIHC 646 (899)
Q Consensus 639 ~kPDIIH~ 646 (899)
..|++|+.
T Consensus 236 ~~~~l~~L 243 (251)
T PF11932_consen 236 RAPELLKL 243 (251)
T ss_pred CCcHHhcc
Confidence 35676664
No 448
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=41.50 E-value=2.8e+02 Score=27.08 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=13.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhh
Q 002628 348 VLQQNQELRKKVDKLEESLDE 368 (899)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (899)
+-+.-.+|+.+|+.+...|+.
T Consensus 56 ~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455777777777777665
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=41.28 E-value=6.6e+02 Score=31.97 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=13.6
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcch
Q 002628 279 ADERVVMLEMERSSLESSLKELESKLSISQ 308 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (899)
..+|+..|..+...--..|.+|+.+....+
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444444444444433333
No 450
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=41.13 E-value=52 Score=40.17 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=62.5
Q ss_pred HHHcCCCCCCCCCcEEEEEecCCCccCHHHHHHHHHHhhc--cCcEEEEEcCCCccCccH-------H------------
Q 002628 794 RKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQFILLGSSPVPHIQV-------Y------------ 852 (899)
Q Consensus 794 Rk~LGLs~~d~~kpLVgfVGRL~~qKGvdlLIeAi~~Lle--~dvqLVIVG~Gp~~~Lqk-------e------------ 852 (899)
|..+|||+ +..+++|.++. .|-...+.+-.-+++. .+-.|++.|.|+.+.+.. +
T Consensus 421 R~~lglp~---~avVf~c~~n~--~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p 495 (620)
T COG3914 421 RAQLGLPE---DAVVFCCFNNY--FKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLP 495 (620)
T ss_pred hhhcCCCC---CeEEEEecCCc--ccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecC
Confidence 56789983 66677777765 4555566666666654 377888888776543211 0
Q ss_pred --------HHHHhcCeeEEcCCcCcChHHHHHHccCCcccccCCC
Q 002628 853 --------PILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCE 889 (899)
Q Consensus 853 --------~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~Vidgv~ 889 (899)
..|..||+|+=+--|-+ +.|.+||+--|+||++-++
T Consensus 496 ~~~~~~h~a~~~iADlvLDTyPY~g-~TTa~daLwm~vPVlT~~G 539 (620)
T COG3914 496 PAPNEDHRARYGIADLVLDTYPYGG-HTTASDALWMGVPVLTRVG 539 (620)
T ss_pred CCCCHHHHHhhchhheeeecccCCC-ccchHHHHHhcCceeeecc
Confidence 88899999987666644 5689999999999876543
No 451
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=40.89 E-value=6e+02 Score=30.33 Aligned_cols=158 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred ccchhhHhhhhhh----hhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchh
Q 002628 244 EIHSFSKELDSLK----TENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKV 319 (899)
Q Consensus 244 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (899)
.+.+|-.||.+|| +-....+.+|..++.++..++. -..-..---.|+.++++-+.|..
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~-~s~~~~~~~~R~~~~~~k~~L~~----------------- 213 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS-ASTNASGDSNRAYMESGKKKLSE----------------- 213 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccchhHHHHHHHHHHHH-----------------
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 002628 320 ECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (899)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (899)
+|..|-.+|+.||++.+...+-+-+= -.|=....|+.-..+-.--+-...+|+.|...++.-.|-.-|.==.
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV~~R--------gvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~ 285 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDVVQR--------GVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQ 285 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 002628 400 SDEEIHSYVQLYQESVKEFQDTLHSLKE 427 (899)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (899)
-=-+=+.++..-...+...++-|.++.+
T Consensus 286 ~V~eEQqfL~~QedL~~DL~eDl~k~~e 313 (424)
T PF03915_consen 286 KVCEEQQFLKLQEDLLSDLKEDLKKASE 313 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.64 E-value=43 Score=31.46 Aligned_cols=96 Identities=26% Similarity=0.425 Sum_probs=0.0
Q ss_pred hhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002628 197 IHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSV 276 (899)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
+.+..+-+..+..+.-+..|+... ......+.-+...-.+-.+++.|+.|--.+-..|..++....++
T Consensus 2 LDik~ir~n~e~v~~~l~~R~~~~------------~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~ 69 (108)
T PF02403_consen 2 LDIKLIRENPEEVRENLKKRGGDE------------EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDA 69 (108)
T ss_dssp -SHHHHHHHHHHHHHHHHHTTCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCT
T ss_pred CCHHHHHhCHHHHHHHHHHcCCCH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccH
Q ss_pred hhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 002628 277 KDADERVVMLEMERSSLESSLKELESKL 304 (899)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (899)
.+.-+.+..+-++-..++..++++|.++
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 453
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=40.61 E-value=97 Score=27.87 Aligned_cols=60 Identities=23% Similarity=0.408 Sum_probs=41.3
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 002628 293 LESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDE 368 (899)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (899)
|.+++..|+..+..-+ ++|-+-..+||.+++.+.++.. ..-.++..|.++|+.|.+.++.
T Consensus 8 Ll~ale~Lq~~y~~q~-------------~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 8 LLSALEELQQSYEKQQ-------------QEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555554433 2588889999999988554432 4667888888888888887764
No 454
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=40.50 E-value=46 Score=38.54 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 002628 356 RKKVDKLEESLDEANIYKL 374 (899)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (899)
..+++.||......||-=+
T Consensus 178 ~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 178 EDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp HHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHhhccCCceeEE
Confidence 4567778888888876543
No 455
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=40.39 E-value=1.4e+02 Score=36.50 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=39.2
Q ss_pred ccccchhhhhhHHHHHHHHHHHH-HHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHH
Q 002628 313 KLSTLKVECKDLYEKVENLQGLL-AKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQ 387 (899)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (899)
+..+.-..|+++-+++..|..=+ +-.++.+++. +..+=.+.-.++..|+..|++...---..+.|++++++++
T Consensus 40 df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~--i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~ 113 (593)
T PF06248_consen 40 DFSPSLQSAKDLIERSKSLAREINDLLQSEIENE--IQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLE 113 (593)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555656655555544 2222224443 4445555566666777777766665555666666655553
No 456
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=40.25 E-value=72 Score=35.52 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccC
Q 002628 162 HKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLN 241 (899)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (899)
+.+++|=|.+=+.++....||+..+..--..++.+.. |+--++..|+.|+.+-......... .|..+-..----..
T Consensus 19 ~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~--ll~~~~k~L~aE~~qwqk~~peii~--~n~~VL~~lgkeel 94 (268)
T PF11802_consen 19 EELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLS--LLMMRVKCLTAELEQWQKRTPEIIP--LNPEVLLTLGKEEL 94 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHH--HHHHHHHHHHHHHHHHHhcCCCcCC--CCHHHHHHHHHHHH
Q ss_pred CcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhh-----HHhhH-HHHHhhhhcchh
Q 002628 242 NSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSS-----LESSL-KELESKLSISQE 309 (899)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~ 309 (899)
.-.+|.|-+-|..++..|..||.|++.=+.=|++....-+.+-...+|... =++++ ++|+.|+....+
T Consensus 95 qkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~ 168 (268)
T PF11802_consen 95 QKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKE 168 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
No 457
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.93 E-value=1.4e+02 Score=32.59 Aligned_cols=92 Identities=34% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHH
Q 002628 258 ENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAK 337 (899)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (899)
|-|-||.|.+.+|.+|.+ +.+|...|-..+.+||+++.+-|+ .-|.+--.-..|...+++
T Consensus 129 ~~~d~ke~~ee~kekl~E----------~~~EkeeL~~eleele~e~ee~~e----------rlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 129 EYMDLKEDYEELKEKLEE----------LQKEKEELLKELEELEAEYEEVQE----------RLKRLEVENSRLEEMLKK 188 (290)
T ss_pred hhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Q ss_pred HhhhhhhHHHHhhhhHHHHHHHHHHH---HHHhhhhhhhhchHHH
Q 002628 338 ATKQADQAISVLQQNQELRKKVDKLE---ESLDEANIYKLSSEKM 379 (899)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 379 (899)
.....-+|+++.|.|+ +++++-.|+++-++.+
T Consensus 189 ----------l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~ 223 (290)
T COG4026 189 ----------LPGEVYDLKKRWDELEPGVELPEEELISDLVKETL 223 (290)
T ss_pred ----------chhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh
No 458
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=39.86 E-value=57 Score=31.84 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=31.5
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~ 554 (899)
|||+.|+.... +.|-...++..+++.+.+.|++|++|-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987533 34777888888999999999999999654
No 459
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.73 E-value=1.8e+02 Score=31.82 Aligned_cols=84 Identities=11% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhh-hhHH
Q 002628 268 VLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQA-DQAI 346 (899)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 346 (899)
.+..++..+.+.+.+|..+++|...|...=...+..|..-++|+..|... -.-+....++. +.+.
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i--------------Ikqa~~er~~~~~~i~ 84 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENI--------------IKQAESERNKRQEKIQ 84 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 34556667777778888888888888888777877787778887653322 11122222222 2233
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 002628 347 SVLQQNQELRKKVDKLEES 365 (899)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~ 365 (899)
....+..-|.+.||++..+
T Consensus 85 r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 85 RLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777555
No 460
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=39.71 E-value=2.5e+02 Score=32.22 Aligned_cols=51 Identities=20% Similarity=0.350 Sum_probs=34.3
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHhhhhchhh
Q 002628 133 LDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEIN--ALEMRLAETDA 187 (899)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 187 (899)
+.-|-+++.|-+.|+..+- +|-.++..++...+..+++-+ +|..|++-++|
T Consensus 85 ~~~iKsvFSne~qdl~~Mk----~a~~ni~~~lp~~~~~~~~e~r~~lk~RI~rSEA 137 (323)
T PF08537_consen 85 WSSIKSVFSNEEQDLTRMK----NACTNINSRLPNRERKSGREERRLLKDRILRSEA 137 (323)
T ss_pred HHHHHHHhCccHHHHHHHH----HHhhhhhhhcCCCcccccHHHHHHHHHHHHHHHH
Confidence 4556677777777776554 356678888888777776654 66666665544
No 461
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.69 E-value=1.8e+02 Score=26.19 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 002628 337 KATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (899)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (899)
..-.++.+| ++..+-|+.+|+.|++.-.... -.-+.|++.|..|++.-....+|++
T Consensus 8 ~LE~ki~~a---veti~~Lq~e~eeLke~n~~L~---~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 8 QLEEKIQQA---VETIALLQMENEELKEKNNELK---EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555 3445567777777776432222 2334556666666655555555543
No 462
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=39.61 E-value=7.3e+02 Score=29.65 Aligned_cols=208 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcc---cchhhhccCCCCcccccccCCcc
Q 002628 168 KEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEH---SELDVFANQNEPANEDLVLNNSE 244 (899)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 244 (899)
|..+..+|..|-+.+.+- +--+..|..+-..+.+-+.+.- .+++....... ....-..+-..|....+-.+...
T Consensus 80 k~h~d~~i~~l~~~i~~~--k~~~~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 156 (426)
T smart00806 80 KKHIDDEIDTLQNELDEV--KQALESQREAIQRLKERQQNSA-ANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAE 156 (426)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHhhhcc-cCcccccCCCCcccccccccccccCCCcccchhHHHH
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHH-HHHH--hhhhhHHhhHHHHHhhhhcchhhhhccccchhhh
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERV-VMLE--MERSSLESSLKELESKLSISQEDVAKLSTLKVEC 321 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (899)
+++|-.+|.+||.=...-+.+++.-=+.+.+-...=..+ +..- --|+.++++=++|. .+|
T Consensus 157 l~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~-----------------~~S 219 (426)
T smart00806 157 LKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLS-----------------EDS 219 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHH-----------------HHH
Q ss_pred hhHHHHHHHHHHHHHHHhhhh---------hhHHHHhhhhHHHHHHHHHHHHHHhh----------hhhhhhchHHHHHH
Q 002628 322 KDLYEKVENLQGLLAKATKQA---------DQAISVLQQNQELRKKVDKLEESLDE----------ANIYKLSSEKMQQY 382 (899)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 382 (899)
..|-.||+.||++.+...+-+ .|--.|...-....+.+.++++.+.. +-.-+.+-| ||+
T Consensus 220 d~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEE--qqf 297 (426)
T smart00806 220 DSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEE--QQF 297 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHH--HHH
Q ss_pred HHHHHHHHHHHHHhh
Q 002628 383 NELMQQKMKLLEERL 397 (899)
Q Consensus 383 ~~~~~~~~~~~~~~~ 397 (899)
-.+...-+--|++++
T Consensus 298 L~lQedL~~DL~dDL 312 (426)
T smart00806 298 LTLQEDLIADLKEDL 312 (426)
T ss_pred HHHHHHHHHHHHHHH
No 463
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=39.26 E-value=6e+02 Score=28.52 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHH
Q 002628 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEK 378 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (899)
+.+..|...+.+|..-.+++-.++.++..=+-+++.|++.++++.--++.++.
T Consensus 250 ~~~~~L~~~l~kak~w~~~i~~ll~~~~~~~p~~~el~~l~~~~~~L~~~~~~ 302 (335)
T PF08429_consen 250 PSLDKLKDALQKAKEWLRQIEELLEQNGSKRPTLDELEELVAESEELPVKLEE 302 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHHHhcCCCCCch
Confidence 34555666666665555555555544444444556666666655555555543
No 464
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=39.17 E-value=45 Score=36.98 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=13.6
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhh
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSV 276 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
.++..-|+.|.--.|+|+..++......
T Consensus 215 r~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 215 RNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3344444455555555555555544443
No 465
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.73 E-value=4.9e+02 Score=27.39 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=27.4
Q ss_pred ccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhh
Q 002628 244 EIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESK 303 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (899)
.+|.-..||..++ +=|..|...|..+-.. ...|-|.+..|-..+.|+=..
T Consensus 8 ~~~~~d~eF~e~~-------eyi~~L~~~l~~~~kv---~~Rl~kr~~el~~~~~efg~~ 57 (200)
T cd07624 8 LLKNRSPEFDKMN-------EYLTLFGEKLGTIERI---SQRIHKERIEYFDELKEYSPI 57 (200)
T ss_pred hhcCCCccHHHHH-------HHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666554 4566666666554443 344445555566666655443
No 466
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=38.52 E-value=1.6e+02 Score=30.24 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=45.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHHHHHhhH
Q 002628 348 VLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIHSYV-QLYQESVKEFQDTLHSLK 426 (899)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 426 (899)
+..+|+++.+++++|.+.|..+ +|....-.+.-.|.+.+..+.-.+.|...+ +.|-..++.+++.-+.|.
T Consensus 79 L~k~~Pev~~qa~~l~e~lQ~~---------vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~ 149 (155)
T PF07464_consen 79 LRKANPEVEKQANELQEKLQSA---------VQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLH 149 (155)
T ss_dssp GGG-SHHHHHT-SSSHHHHHHH---------HHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347999999999999888765 444555667777888888888888888887 566665555555444443
No 467
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.45 E-value=7.9e+02 Score=29.66 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=46.5
Q ss_pred cchhHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhHHH-hhhhchhhhhhhhhhhhhhHhhhHHH
Q 002628 131 SQLDNLISMIRNAEKNILLLNEA----RVQALEDLHKILQEKEALQGEINALE-MRLAETDARIRVAAQEKIHVELLEDQ 205 (899)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (899)
.-|+-|.+.|.+..+|++-|-|- |+--++...+.+.+++.+.-+ --| .++.|+.+-+.-.+++ .+-.|+.
T Consensus 293 ayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e--~~e~~~IqeleqdL~a~~ee---i~~~eel 367 (521)
T KOG1937|consen 293 AYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETE--DEEIRRIQELEQDLEAVDEE---IESNEEL 367 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHHHHH---HHhhHHH
Confidence 45788899999999999988763 444444444444444433211 111 3445555555444442 2234566
Q ss_pred HHHHHHHhhh
Q 002628 206 LQKLQHELTH 215 (899)
Q Consensus 206 ~~~~~~~~~~ 215 (899)
-++||+||..
T Consensus 368 ~~~Lrsele~ 377 (521)
T KOG1937|consen 368 AEKLRSELEK 377 (521)
T ss_pred HHHHHHHHhc
Confidence 6788888865
No 468
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=38.30 E-value=1.2e+02 Score=36.56 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=13.9
Q ss_pred HhhhhhHHhhHHHHHhhhhcchhhhhcccc
Q 002628 287 EMERSSLESSLKELESKLSISQEDVAKLST 316 (899)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (899)
+.|...|+..-.|.+.-|..||++.-+|-+
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333334444444444445555555544433
No 469
>COG4550 Predicted membrane protein [Function unknown]
Probab=38.12 E-value=3.1e+02 Score=27.07 Aligned_cols=92 Identities=21% Similarity=0.377 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHH-----hhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhc
Q 002628 324 LYEKVENLQGLLAKA-----TKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQ 398 (899)
Q Consensus 324 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (899)
.-.++.+|...+..+ -+||+. -+-+||.+..+|++++..=++|.-++- +++ ++-+|.-|.+.+
T Consensus 7 i~~~a~~la~~ik~teeV~~fq~aE~---qin~n~~v~~~~~~iK~lQKeAVn~q~----y~K-----~eAlkqses~i~ 74 (120)
T COG4550 7 ILKQADNLANKIKETEEVKFFQQAEA---QINANQKVKTKVDEIKKLQKEAVNLQH----YDK-----EEALKQSESKID 74 (120)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHhhHHHHH----hhH-----HHHHHHHHHHHH
Confidence 444555555554432 234544 467899999999999999999976542 211 122333444444
Q ss_pred cchHHHHH--HHHHHHHHHHHHHHHHHhhHh
Q 002628 399 RSDEEIHS--YVQLYQESVKEFQDTLHSLKE 427 (899)
Q Consensus 399 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 427 (899)
.--++|.+ .|+-|+.|..+--+-|.-+..
T Consensus 75 ~le~ei~~~PlVeefr~sq~daNdLlQ~it~ 105 (120)
T COG4550 75 ELEAEIDHLPLVEEFRTSQEDANDLLQYITK 105 (120)
T ss_pred HHHHHHhcCchHHHHHHHHHhHHHHHHHHHH
Confidence 44444443 455555555544444443333
No 470
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=37.71 E-value=1.1e+02 Score=30.98 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=38.7
Q ss_pred HHhhHHHHHhhhhcchhhhhccccchhhhhhH-HHHHHHHHHHHHHHhhhhhhHHHHhh----hhHHHHHHHHHHHHHHh
Q 002628 293 LESSLKELESKLSISQEDVAKLSTLKVECKDL-YEKVENLQGLLAKATKQADQAISVLQ----QNQELRKKVDKLEESLD 367 (899)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 367 (899)
-+++++.|++.+..-.-=+.++..+..|.-.- .+..+.|..+|.++.+=+++...+-. .+..+.+|+.+||++|.
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPRYARKIEELEESLR 111 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHhHHHHHHHHHHHHH
Confidence 44555555555554444444444444443333 45566666666666555555433221 23456666666666654
No 471
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.59 E-value=1.6e+02 Score=33.42 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=19.0
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhh
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDA 279 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (899)
.+..++..+.+|..++++.++....+|.....|
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666666666666666666555544
No 472
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.48 E-value=2.5e+02 Score=31.89 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc--
Q 002628 139 MIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-- 216 (899)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (899)
||.||+ |.--+-.-+-.++.+-.+.|+++..+.-+...+ ..+++--...|--...+..++..||.+|.++
T Consensus 97 Mv~naQ-----LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~---~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 97 MVSNAQ-----LDNEKSALMYQVDLLKDKLEELEETLAQLQREY---REKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHhh-----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------ccCcccchhhhccCCCCcccccccCCcccchhhHh--------hhhhhhhhccchhHHHHHHHHhhhhhh
Q 002628 217 ----------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKE--------LDSLKTENLSLKNDIKVLKAELNSVKD 278 (899)
Q Consensus 217 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (899)
+. ..++..-+...+++...-.+-.....|.|... |.-|-.||-.|-+.|..||.+|.+...
T Consensus 169 li~khGlVlv~~-~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 169 LIEKHGLVLVPD-ATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred HHHHCCeeeCCC-CCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hhhHHHHHHhhhhhH--------------------HhhHHHHHhhhhcchhhhhcc
Q 002628 279 ADERVVMLEMERSSL--------------------ESSLKELESKLSISQEDVAKL 314 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 314 (899)
..+.-. --.+-..| ...|.|+-.||..|.-|+.-|
T Consensus 248 ~~~~~~-~~~~~~~l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQeit~~ 302 (302)
T PF09738_consen 248 EGRRQK-SSSENGVLGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQEITTL 302 (302)
T ss_pred cccccc-ccCCCcccccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHhhccC
No 473
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.45 E-value=4.7e+02 Score=26.81 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=29.0
Q ss_pred hHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHH
Q 002628 249 SKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 285 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (899)
-.+++.+|..|..++.-+..+..+|....+..+-+-.
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~ 41 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL 41 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 3567888899999999999888888877776665543
No 474
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=37.37 E-value=4.6e+02 Score=26.64 Aligned_cols=70 Identities=27% Similarity=0.261 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH-HHHhhhhHHHHHHH-HHHHHHHhhhhhhh-hchHHHHHHHHHHHHHHHHHHHhh
Q 002628 324 LYEKVENLQGLLAKATKQADQA-ISVLQQNQELRKKV-DKLEESLDEANIYK-LSSEKMQQYNELMQQKMKLLEERL 397 (899)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 397 (899)
-.+.|..++..+..+.+++..- ..+-+-..+|++.+ -.+|.. .+.. -.-.-||.-.+-.++||+.||..+
T Consensus 55 ~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~----i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 55 AFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETK----IINQPSNIRVLQNILRSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHH----HhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667777776665553321 22223333444444 222211 1111 111234555566677777777654
No 475
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=37.36 E-value=51 Score=31.27 Aligned_cols=48 Identities=23% Similarity=0.478 Sum_probs=36.1
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSL 297 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (899)
+|-.|||-+|||-..+|.|+++-+.....+ .|.++-.||--.-||...
T Consensus 68 alcdefdmikee~~emkkdleaankrve~q---~ekiflmekkfe~lekky 115 (122)
T PF05325_consen 68 ALCDEFDMIKEETIEMKKDLEAANKRVESQ---AEKIFLMEKKFETLEKKY 115 (122)
T ss_pred eechhhhHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHH
Confidence 678899999999999999999988766554 456666666555555443
No 476
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.34 E-value=1.8e+02 Score=34.53 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=36.4
Q ss_pred hhhhHHHHHHhhhhhH--------HhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHH
Q 002628 278 DADERVVMLEMERSSL--------ESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENL 331 (899)
Q Consensus 278 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (899)
+.-|-..+|.|-|+.+ -+++.|...|+.+|..-.+++.++-.|--.=|..+|.|
T Consensus 365 ~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 365 EAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred HHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677888775 35677888888777777777777766655556666654
No 477
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.29 E-value=8.9e+02 Score=29.93 Aligned_cols=139 Identities=22% Similarity=0.293 Sum_probs=90.5
Q ss_pred hhhHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccC
Q 002628 144 EKNILLLNEARVQ----ALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVS 219 (899)
Q Consensus 144 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (899)
|.-|.+|..-|++ -+|.++..-+|...|..+||.|..-|.|. |+++-.|+++.++-..+
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~ek-----------------e~sl~dlkehassLas~ 374 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEK-----------------ESSLIDLKEHASSLASA 374 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 5667888877765 35666666777778888888887755444 34444555554442111
Q ss_pred cccchhhhccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhh---hhhhhhHHHHHHhhhhhHHhh
Q 002628 220 EHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNS---VKDADERVVMLEMERSSLESS 296 (899)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 296 (899)
.+-.++.+-++--.|.+=+||---|..|+..-+..+++ -.++++++..||+|++-.+
T Consensus 375 ------------------glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~-- 434 (654)
T KOG4809|consen 375 ------------------GLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYR-- 434 (654)
T ss_pred ------------------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHH--
Confidence 01224445566666777778877777776665555544 3578999999999987654
Q ss_pred HHHHHhhhhcchhhhhccccchhhhhhH
Q 002628 297 LKELESKLSISQEDVAKLSTLKVECKDL 324 (899)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (899)
..+.-+|+-|-.+-++--||+++
T Consensus 435 -----de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 435 -----DECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777777777777777765
No 478
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.24 E-value=41 Score=29.40 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=34.6
Q ss_pred hhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhH
Q 002628 247 SFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSL 293 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (899)
.+..++..|+.++..++...+.|+.++...+.+++++...-+++-++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 55667777777777777777788888887767788887777665443
No 479
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=37.15 E-value=52 Score=33.69 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=40.9
Q ss_pred hhhhhhhccchhHHHHHHHHhhhhhhhhhHHH--HHHhhhhhHHhhHHHHHhhhhcchh
Q 002628 253 DSLKTENLSLKNDIKVLKAELNSVKDADERVV--MLEMERSSLESSLKELESKLSISQE 309 (899)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (899)
....+|...|+.++..+|.|++.+--.||+.. +|++....+++.|+++.......+.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999999999999998764 5666666677666666666555443
No 480
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=37.12 E-value=1.5e+02 Score=27.99 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhh-------hhhhHhhhHHHHHHHHHHhhhcccCcccchhh
Q 002628 154 RVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQ-------EKIHVELLEDQLQKLQHELTHRGVSEHSELDV 226 (899)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (899)
.....++.+.|+.|. .++.++|.|+.=..|+..|-.-... ...--+++..+|--.+
T Consensus 16 ~~~~~~Ef~~I~~Er-~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~---------------- 78 (109)
T PF03980_consen 16 EENCKKEFEEILEER-DVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYK---------------- 78 (109)
T ss_pred HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHH----------------
Confidence 344567888888875 4677777777666655444331111 0111112222221111
Q ss_pred hccCCCCcccccccCCcccchhhHhhhhhhhhhccchhHHHHHHH
Q 002628 227 FANQNEPANEDLVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKA 271 (899)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (899)
...+..|...++.+..||..|.+.|+.+++
T Consensus 79 ---------------~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 79 ---------------KKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122346778888889999998888887765
No 481
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.88 E-value=9.8e+02 Score=30.32 Aligned_cols=60 Identities=27% Similarity=0.286 Sum_probs=34.6
Q ss_pred cccchhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhh
Q 002628 129 STSQLDNLISMIRNAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVA 192 (899)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (899)
....+.++-+-+.|-||=+ +--++++=+..+++ .++++-+.+.+.-+|-.|++..++...
T Consensus 177 ~~~~~~~~~s~l~~~eke~---~~~~~ql~~~~q~~-~~~~~~l~e~~~~~qq~a~~~~ql~~~ 236 (716)
T KOG4593|consen 177 QEMRAKRLHSELQNEEKEL---DRQHKQLQEENQKI-QELQASLEERADHEQQNAELEQQLSLS 236 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 3445667777788888743 44445544444444 444444456666677777766665544
No 482
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.70 E-value=87 Score=34.53 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=32.2
Q ss_pred HHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccC
Q 002628 169 EALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQ 230 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (899)
..||.||+.++.+++... |...+ .--.+|++|++||......+++ |.+..+-+.+
T Consensus 67 ~~L~~ev~~~~~~~~s~~-~~~~t-----~~~~ie~~l~~l~~~aG~v~V~-G~Gl~ITi~d 121 (247)
T COG3879 67 NTLAAEVEDLENKLDSVR-RSVLT-----DDAALEDRLEKLRMLAGSVPVT-GPGLVITIDD 121 (247)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHh-----HHHHHHHHHHHHHHHhccCCCc-CCcEEEEecC
Confidence 345555555555554433 22222 2236789999999999998887 4455444433
No 483
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=36.62 E-value=1.1e+02 Score=38.12 Aligned_cols=145 Identities=20% Similarity=0.253 Sum_probs=77.3
Q ss_pred hhhHHHHHHhhhhhHHhhHHHHHhhhhcchh------hhhccccchhhhh----hHHHHHHHHHHHHHHHhhh-----hh
Q 002628 279 ADERVVMLEMERSSLESSLKELESKLSISQE------DVAKLSTLKVECK----DLYEKVENLQGLLAKATKQ-----AD 343 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~ 343 (899)
.++....++.+.+.+++.+++++..+.+.+. |++-+...+..-- .--++.+.+...++...+- -.
T Consensus 111 ~ee~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (660)
T COG1269 111 VEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEA 190 (660)
T ss_pred hhHHHHhHHHHHHHHhhhHHHHHHHHHHhhhhhccchhhHhhcccceEEEEeeeehhhhhhHHHhhcccccchhhhcccc
Confidence 5666666666667777777777766655432 2222222221100 0122333333333332221 01
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHH--HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 002628 344 QAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKM--QQYNELMQQKMKLLEERLQRSDEEIHSYVQLYQESVKEFQDT 421 (899)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (899)
....|.-.-.+.-++|++.-+++ ....++.+..+. .++-.-+.++++..+...+.-..++..+.++|...+..-...
T Consensus 191 ~~~~v~~~~~~~~~~v~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 269 (660)
T COG1269 191 SVVIVVAHGAEDLDKVSKILNEL-GFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREI 269 (660)
T ss_pred ceEEEEEecccchHHHHHHHHhC-CcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222223334455677766665 344444444442 445566677777777777777888888888888877777666
Q ss_pred HHh
Q 002628 422 LHS 424 (899)
Q Consensus 422 ~~~ 424 (899)
|+.
T Consensus 270 l~~ 272 (660)
T COG1269 270 LEI 272 (660)
T ss_pred HHH
Confidence 654
No 484
>PLN03188 kinesin-12 family protein; Provisional
Probab=36.61 E-value=4.5e+02 Score=35.35 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhc--------
Q 002628 145 KNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHR-------- 216 (899)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (899)
|.|.|-.+.|+ +|+.-..--|.|+-|+..=.+=-.|.+.-|..|.+|-.+.-=--.+|+..-+.|..+
T Consensus 1062 ~wislteelr~----eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi 1137 (1320)
T PLN03188 1062 KWISLAEELRT----ELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGI 1137 (1320)
T ss_pred hheechHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------ccCcccchhhhccCCCCcccccccCCcccchhhHhhhhhhhh----hccchhHHHHHHHHhhhhhhhhhH
Q 002628 217 ----------GVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKELDSLKTE----NLSLKNDIKVLKAELNSVKDADER 282 (899)
Q Consensus 217 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 282 (899)
|+-- ...-.+.+|.-|+..||-| ...||+.=..|+.+|.+.||.-.
T Consensus 1138 ~dvkkaaakag~kg-------------------~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~- 1197 (1320)
T PLN03188 1138 DDVKKAAARAGVRG-------------------AESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQ- 1197 (1320)
T ss_pred HHHHHHHHHhcccc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH-
Q ss_pred HHHHHhhhhhHHhhHHHHHhhhhcchhhhhccccchhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHH
Q 002628 283 VVMLEMERSSLESSLKELESKLSISQEDVAKLSTLKVECKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKL 362 (899)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (899)
+-=|-+-.|..-=..+|-.-+.|..+.|.|..+-+++|||
T Consensus 1198 ----------------------------------------aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1198 ----------------------------------------AAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 002628 363 E 363 (899)
Q Consensus 363 ~ 363 (899)
+
T Consensus 1238 k 1238 (1320)
T PLN03188 1238 K 1238 (1320)
T ss_pred H
No 485
>PLN00016 RNA-binding protein; Provisional
Probab=36.59 E-value=35 Score=38.77 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002628 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPK 554 (899)
Q Consensus 510 ~~MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItP~ 554 (899)
.+|+|++++.. .||.|.+=..|++.|.+.||+|++++..
T Consensus 51 ~~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 34678866442 4777777788999999999999999854
No 486
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=36.57 E-value=2.7e+02 Score=27.37 Aligned_cols=99 Identities=18% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccc
Q 002628 158 LEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANED 237 (899)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (899)
.+.++++-++.+.--.--..|||+|.|. .+.-++|..|
T Consensus 11 ~~kyq~LQk~l~k~~~~rqkle~qL~En--------------k~V~~Eldll---------------------------- 48 (120)
T KOG3478|consen 11 ANKYQNLQKELEKYVESRQKLETQLQEN--------------KIVLEELDLL---------------------------- 48 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHh----------------------------
Q ss_pred cccCCcccchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhhhcchhhhhcc
Q 002628 238 LVLNNSEIHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKLSISQEDVAKL 314 (899)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (899)
..|+.|.-|.- +.++|.|++.-++ +-++|+--..+|-..+++++++++.++..-.+-|.++
T Consensus 49 --e~d~~VYKliG--------pvLvkqel~EAr~------nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~ 109 (120)
T KOG3478|consen 49 --EEDSNVYKLIG--------PVLVKQELEEART------NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKL 109 (120)
T ss_pred --cccchHHHHhc--------chhhHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=36.33 E-value=6.1e+02 Score=27.74 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=34.6
Q ss_pred hccchhHHHHHHHHhhhhhhhhhHHHHHHhhh----hhHHhhHHHHHhhhhcch
Q 002628 259 NLSLKNDIKVLKAELNSVKDADERVVMLEMER----SSLESSLKELESKLSISQ 308 (899)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 308 (899)
|..++.+|+.++.-|..-+++|..+...=.+. ..|.....+|++.+-.++
T Consensus 79 ~~~l~~~l~~~~~~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~ 132 (296)
T PF13949_consen 79 NASLRKELQKYREYLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSS 132 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B-
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCC
Confidence 45788889999999988888888776654443 346677777777776655
No 488
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.25 E-value=4.6e+02 Score=29.39 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhh-hhhHhhhHHHHHHH
Q 002628 160 DLHKILQEKEALQGEINALEMRLAETDARIRVAAQE-KIHVELLEDQLQKL 209 (899)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 209 (899)
.++++..+.+.++++|+.++..+.+....|+...+- +-+-+++++++..+
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666666666544321 22445666665544
No 489
>PRK13411 molecular chaperone DnaK; Provisional
Probab=35.87 E-value=1.6e+02 Score=36.71 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHhhhhhHHhhHHHHHhhh
Q 002628 264 NDIKVLKAELNSVKDADERVVMLEMERSSLESSLKELESKL 304 (899)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (899)
++++.++.++...++.|+....++.-+..||+-+-+++.++
T Consensus 505 ~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l 545 (653)
T PRK13411 505 NEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTL 545 (653)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444444444444443
No 490
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.87 E-value=38 Score=31.56 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=37.8
Q ss_pred hhhhhHHHhhhhchhhhhhhhhhhhhhHhhhHHHHHHHHHHhhhcccCcccchhhhccCCCCcccccccCCcccchhhHh
Q 002628 172 QGEINALEMRLAETDARIRVAAQEKIHVELLEDQLQKLQHELTHRGVSEHSELDVFANQNEPANEDLVLNNSEIHSFSKE 251 (899)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (899)
+.||.-+|.+++..-.++....----..+|-.++-+.|.+|+..- ...++..-++
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l-------------------------~~~l~~~E~e 58 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNEL-------------------------KEKLENNEKE 58 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHH-------------------------HHHhhccHHH
Confidence 456677777777666666554443344455555555555554431 2223455788
Q ss_pred hhhhhhhhc
Q 002628 252 LDSLKTENL 260 (899)
Q Consensus 252 ~~~~~~~~~ 260 (899)
|..|+.||.
T Consensus 59 L~~LrkENr 67 (85)
T PF15188_consen 59 LKLLRKENR 67 (85)
T ss_pred HHHHHHhhh
Confidence 999999885
No 491
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=35.80 E-value=5.9e+02 Score=27.47 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=6.9
Q ss_pred hhhhHHHhhhhch
Q 002628 173 GEINALEMRLAET 185 (899)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (899)
|||--|..-|-|+
T Consensus 10 GEIsLLKqQLke~ 22 (202)
T PF06818_consen 10 GEISLLKQQLKES 22 (202)
T ss_pred hhHHHHHHHHHHH
Confidence 4555555555444
No 492
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=35.73 E-value=56 Score=35.83 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=27.2
Q ss_pred CeEEEEcCccCCcccCCcHHHHHHHHHHHHHHCCCeEEEE
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIV 551 (899)
Q Consensus 512 MKILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVI 551 (899)
|+++.|.. |. +.-|..+++.+||.+|++.|..|.+|
T Consensus 1 M~~iai~s---~k-GGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVS---PK-GGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEec---CC-CCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67777764 22 22255678889999999999999998
No 493
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.62 E-value=9.8e+02 Score=29.95 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh-hhhhchHHHHHHHHHHHHHHHHHHHhhcc
Q 002628 321 CKDLYEKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEAN-IYKLSSEKMQQYNELMQQKMKLLEERLQR 399 (899)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (899)
|++.++..-+.+.-+.+ ++++=...-..++ +++..|.+-...++. -|+.+-+++..--.-..+++-.+.++||.
T Consensus 108 ~~~~~~~~~~~~~~~~~---~~e~e~~~~~~k~--~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~ 182 (611)
T KOG2398|consen 108 AKDTYEVLCAKSNYLHR---CQEKESLKEKEKR--KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQE 182 (611)
T ss_pred HHHHHHHHHHHHHHHHH---HHhhhhcccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444333333 4444433333333 677777766665543 46666666666666677888888888876
Q ss_pred chHH----HHHHHHHHHHHHHHHHH
Q 002628 400 SDEE----IHSYVQLYQESVKEFQD 420 (899)
Q Consensus 400 ~~~~----~~~~~~~~~~~~~~~~~ 420 (899)
-.+. +.+-+.+|+..+.+=..
T Consensus 183 ~Ee~rl~~lk~~l~~~~~~is~~~~ 207 (611)
T KOG2398|consen 183 IEESRLSFLKEELWLFANQISESCV 207 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5543 44444555555444333
No 494
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.39 E-value=3.5e+02 Score=25.46 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 002628 326 EKVENLQGLLAKATKQADQAISVLQQNQELRKKVDKLEESLDEANIYKLSSEKMQQYNELMQQKMKLLEERLQRSDEEIH 405 (899)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (899)
.+...||.-+...+.+-.+.-.-+..|.+..+.+..|+ ..+++|+.--. =++..-+.-+.+.+...-+.|.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~---~d~~vy~~VG~------vfv~~~~~ea~~~Le~~~e~le 76 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA---DDAEVYKLVGN------VLVKQEKEEARTELKERLETIE 76 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchHHHHhhh------HHhhccHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333444444444433333 56677765443 2444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhh
Q 002628 406 SYVQLYQESVKEFQDTLHSLKEE 428 (899)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~ 428 (899)
+-++....+++..+..+.+++.+
T Consensus 77 ~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666655555543
No 495
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=35.07 E-value=97 Score=34.41 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCCCCCCCcE-EEEEec-CCCccCHH--HHHHHHHHhhccCcEEEEEcCCCccCccH--------------
Q 002628 790 KESIRKHLGLSSADARKPL-VGCITR-LVPQKGVH--LIRHAIYRTLELGGQFILLGSSPVPHIQV-------------- 851 (899)
Q Consensus 790 K~aLRk~LGLs~~d~~kpL-VgfVGR-L~~qKGvd--lLIeAi~~Lle~dvqLVIVG~Gp~~~Lqk-------------- 851 (899)
+..+...++++. ++|+ ++..|. ..+.|.+. ...+.+..+.+.+.++++.|.+.+.+...
T Consensus 161 ~~~~~~~~~~~~---~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~ 237 (334)
T TIGR02195 161 QAAALAKFGLDT---ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLA 237 (334)
T ss_pred HHHHHHHcCCCC---CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCC
Confidence 344566777752 3454 455554 44666655 66677766665678999998765432110
Q ss_pred ------H--HHHHhcCeeEEc
Q 002628 852 ------Y--PILLSSFSFLRK 864 (899)
Q Consensus 852 ------e--~iyaaADIfVlP 864 (899)
+ .+++.||++|..
T Consensus 238 g~~sL~el~ali~~a~l~I~~ 258 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTN 258 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEee
Confidence 0 777788888875
No 496
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=2.3e+02 Score=28.08 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=33.3
Q ss_pred hccchhHHHHHHHHhhhhhhh-hhHHHHHHhhhhhHHhhHHHHHhhhhcchhh
Q 002628 259 NLSLKNDIKVLKAELNSVKDA-DERVVMLEMERSSLESSLKELESKLSISQED 310 (899)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (899)
|.+.|-+-..++.+|.+-+++ +-|+..|++.-..++..+++|.+++..+..+
T Consensus 61 ~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 61 NLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666665554 4467777777777777777777766555443
No 497
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=34.91 E-value=2.7e+02 Score=31.49 Aligned_cols=74 Identities=14% Similarity=0.044 Sum_probs=44.2
Q ss_pred cEEEEEecCCCccCHHHHHHHHHHhhccCcEE-EEEcCCCccCccHHHHHHhcCeeEEcCCcCcChHHHHHHccCCccc-
Q 002628 807 PLVGCITRLVPQKGVHLIRHAIYRTLELGGQF-ILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTV- 884 (899)
Q Consensus 807 pLVgfVGRL~~qKGvdlLIeAi~~Lle~dvqL-VIVG~Gp~~~Lqke~iyaaADIfVlPS~~EpFGLV~LEAMg~gl~V- 884 (899)
-+.+..+|=++..- .+++....+..-.+ +.-|+|+.+ +. .+|+.||.++++.-+-++ +-||.+.|.||
T Consensus 184 ~~~vttSRRTp~~~----~~~L~~~~~~~~~~~~~~~~~~nP-y~--~~La~ad~i~VT~DSvSM---vsEA~~tG~pV~ 253 (311)
T PF06258_consen 184 SLLVTTSRRTPPEA----EAALRELLKDNPGVYIWDGTGENP-YL--GFLAAADAIVVTEDSVSM---VSEAAATGKPVY 253 (311)
T ss_pred eEEEEcCCCCcHHH----HHHHHHhhcCCCceEEecCCCCCc-HH--HHHHhCCEEEEcCccHHH---HHHHHHcCCCEE
Confidence 35666777676543 34444444322233 233444322 22 799999999999766543 77999999887
Q ss_pred ccCCCc
Q 002628 885 NNNCEP 890 (899)
Q Consensus 885 idgv~~ 890 (899)
+-..++
T Consensus 254 v~~l~~ 259 (311)
T PF06258_consen 254 VLPLPG 259 (311)
T ss_pred EecCCC
Confidence 434333
No 498
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.85 E-value=3.8e+02 Score=28.26 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=28.2
Q ss_pred cchhhHhhhhhhhhhccchhHHHHHHHHhhhhhhhhhHHHH
Q 002628 245 IHSFSKELDSLKTENLSLKNDIKVLKAELNSVKDADERVVM 285 (899)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (899)
+-.+-++.+.|++|-.-..+-|..+|+-..+|..-|..-+.
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 33556677777777777777777777777777766654443
No 499
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.82 E-value=47 Score=34.53 Aligned_cols=51 Identities=37% Similarity=0.528 Sum_probs=19.9
Q ss_pred hhHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhchhhhhhhhhhhhh
Q 002628 133 LDNLISMIR-NAEKNILLLNEARVQALEDLHKILQEKEALQGEINALEMRLAETDARIRVAAQEKI 197 (899)
Q Consensus 133 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (899)
||||=.+.. -.|+|.+|=++ |.|||.|+-+++-|.-.+. |-++.++.|++.
T Consensus 2 LeD~EsklN~AIERnalLE~E------------LdEKE~L~~~~QRLkDE~R--DLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESE------------LDEKENLREEVQRLKDELR--DLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHH------------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 566666553 34667665433 3788888888877776665 334444555444
No 500
>CHL00194 ycf39 Ycf39; Provisional
Probab=34.45 E-value=49 Score=36.53 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.5
Q ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeeC
Q 002628 528 GGLGDVVAGLGKALQKKGHLVEIVLPK 554 (899)
Q Consensus 528 GGLg~vV~~LArALqk~GHeVtVItP~ 554 (899)
||.|.+=..++++|.++||+|++++..
T Consensus 7 GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 7 GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 677777778889999999999999754
Done!