Query 002628
Match_columns 899
No_of_seqs 179 out of 1832
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 16:06:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002628.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1347-1350//hhsearch_pdb/002628hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 1.0 1 1 482.4 32.7 379 503-890 1-434 (536)
2 1rzu_A Glycogen synthase 1; gl 1.0 1 1 316.8 25.5 357 512-886 1-394 (485)
3 2qzs_A Glycogen synthase; glyc 1.0 1 1 315.1 25.1 357 512-887 1-396 (485)
4 3fro_A GLGA glycogen synthase; 1.0 1 1 296.0 31.1 330 510-890 1-363 (439)
5 3nb0_A Glycogen [starch] synth 1.0 1 1 273.1 20.8 344 513-891 29-553 (725)
6 3s28_A Sucrose synthase 1; gly 1.0 1 1 268.0 20.2 356 486-891 257-698 (816)
7 2r60_A Glycosyl transferase, g 1.0 1 1 254.8 25.4 319 510-890 6-392 (499)
8 3c48_A Predicted glycosyltrans 1.0 1 1 249.5 26.5 302 508-887 17-355 (438)
9 2iw1_A Lipopolysaccharide core 1.0 1 1 230.9 12.5 279 512-891 1-305 (374)
10 2c4m_A Glycogen phosphorylase; 1.0 1 1 228.6 21.8 363 526-892 112-651 (796)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=482.40 Aligned_cols=379 Identities=28% Similarity=0.434 Sum_probs=297.9
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 26889999876799827557766679189999999999997899299995289987521123233222012002577411
Q 002628 503 LTSSSISSGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLF 582 (899)
Q Consensus 503 ~~~~~~~~~MkILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~~~syfdG~~~ 582 (899)
|+...+...|||+|+++|++|++++||+++++.+|++||+++||+|+||+|.|++..... . ........+.+...
T Consensus 1 ~~~~~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~-~----~~~~~~~~~~~~~~ 75 (536)
T 3vue_A 1 MAHHHHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAW-D----TSVVAEIKVADRYE 75 (536)
T ss_dssp -------CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCE-E----EEEEEEEEETTEEE
T ss_pred CCCCCCCCCCEEEEEEEECCCHHCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHC-C----CCEEEEEEECCCEE
T ss_conf 986668997389999872431212676999999999999976996999904850222422-6----51689998368337
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCCCCC------CCCCC------CCCCHHHHHHHHHHHHHHHHHHC-----------C
Q ss_conf 1203542108900999279999865546------87778------88503567787999999999809-----------9
Q 002628 583 KNKVWVSTIEGLPVYFIEPHHPDKFFWR------GQFYG------EHDDFRRFSFFSRAALELLLQAG-----------K 639 (899)
Q Consensus 583 ~~rVw~~~veGI~V~lIe~~~p~~~F~r------~~~Yg------~~dd~~Rfs~FsraalelLkq~~-----------~ 639 (899)
.+++|.....|+++||++.+. ||.+ ..+|+ +.|+..||.+|++++++.+...+ .
T Consensus 76 ~~~~~~~~~~gv~~y~id~~~---~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~ 152 (536)
T 3vue_A 76 RVRFFHCYKRGVDRVFIDHPS---FLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYG 152 (536)
T ss_dssp EEEEEECEETTEEEEEEECTT---TTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCC
T ss_pred EEEEEEEEECCCEEEEECCHH---HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 899999997895599964755---41233466778666887567664179999999999999999730265301101479
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCC---CCCCCCCCCH
Q ss_conf 96099988881446999999863658-9999809998328977788872456421995111378653---3566422101
Q 002628 640 QPDIIHCHDWQTAFVAPLYWDLYVPK-GLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDR---MQDNSAHDRI 715 (899)
Q Consensus 640 kPDIIH~HdW~talVapl~l~~ya~~-gL~g~PiVlTIHn~e~qG~~p~~~L~~~GL~~~~l~~pdr---Lqd~~~~~~i 715 (899)
.|||||||||++++++.++...+... .+.++|+|+|+||+.++|.++...+...+++...+...+. .....+...+
T Consensus 153 ~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (536)
T 3vue_A 153 EDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKI 232 (536)
T ss_dssp SCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCCCCCH
T ss_conf 98799977604899999999864023320256345421574224555533364418965640103333114641003304
Q ss_pred HHHHHHHHHCCEEEEECHHHHHH----HCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCC-CCCHHHHH
Q ss_conf 05657844336899708126874----00341010123788289983685589889985102332034222-11113318
Q 002628 716 NPLKGAIVFSNIVTTVSPSYAQE----GGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNAND-LQGKAENK 790 (899)
Q Consensus 716 nllK~ai~~AD~VITVS~s~aqe----~g~GL~~lL~~~~~KI~VIpNGID~e~f~Pa~d~~L~~~y~add-l~gK~~~K 790 (899)
|++|.++.+||+|+|||++|+++ ++.|+...+.....++.+|+||||.+.|+|.+|+.++.+|++.+ +.+|..+|
T Consensus 233 n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k 312 (536)
T 3vue_A 233 NWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNK 312 (536)
T ss_dssp EHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 39999998536778768788534312634452200125457818997996642148877621001444345556567779
Q ss_pred HHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CH----------------
Q ss_conf 99999809998899984999981577766999999999981106909999918995583---28----------------
Q 002628 791 ESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHI---QV---------------- 851 (899)
Q Consensus 791 ~aLRk~LGLs~~d~dkpLIgfVGRL~pqKGidlLIeAi~~Lle~~vqLVIVG~G~~~~l---qk---------------- 851 (899)
..+++++|++. +++.|+|+||||++++||++++++|+.++.+.+.+|+|+|.|+.... +.
T Consensus 313 ~~l~~~~gl~~-d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~ 391 (536)
T 3vue_A 313 EALQAEAGLPV-DRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFN 391 (536)
T ss_dssp HHHHHHTTSCC-CTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCC
T ss_pred HHHHHHCCCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99998619987-99975899996530237847899999976854985999954672689999998761688549997146
Q ss_pred ----HHHHHHCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf ----999976480688678676719999981599610169985
Q 002628 852 ----YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEP 890 (899)
Q Consensus 852 ----e~IlAaADIfVvPS~~EpFGLV~LEAMa~gl~Vi~~v~~ 890 (899)
..+|++||+||+||++||||++++|||++|+||+..-+|
T Consensus 392 ~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~g 434 (536)
T 3vue_A 392 APLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTG 434 (536)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCT
T ss_pred HHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHCCCCEEECCCC
T ss_conf 8889999986234253465689888999999869989990799
No 2
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=316.78 Aligned_cols=357 Identities=28% Similarity=0.460 Sum_probs=252.0
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEE
Q ss_conf 76799827557766679189999999999997899299995289987521123233222012002577411120354210
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MkILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~~~syfdG~~~~~rVw~~~v 591 (899)
|||++|+.+++|....||++.++..|+++|.++||+|+|+++.++..... ...+..+. .+... .|. ..+++....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~-~~~~~-~~~--~~~~~~~~~ 75 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA-VTDPVKCF-EFTDL-LGE--KADLLEVQH 75 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHH-CCSCEEEE-EESCS-SSC--CEEEEEEEE
T ss_pred CEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCCEEE-EEEEE-CCC--EEEEEEEEE
T ss_conf 96999944651565665499999999999997698699991564433444-35651368-99983-087--478999996
Q ss_pred CCEEEEEECCCCCCCCCCCC-CCCC------CCCCHHHHHHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 89009992799998655468-7778------8850356778799999999980--9996099988881446999999863
Q 002628 592 EGLPVYFIEPHHPDKFFWRG-QFYG------EHDDFRRFSFFSRAALELLLQA--GKQPDIIHCHDWQTAFVAPLYWDLY 662 (899)
Q Consensus 592 eGI~V~lIe~~~p~~~F~r~-~~Yg------~~dd~~Rfs~FsraalelLkq~--~~kPDIIH~HdW~talVapl~l~~y 662 (899)
.|+++++++.. .++.+. .+|+ +.++..++.+|++++.++++.. ..+|||||+|+|.+++++ .+....
T Consensus 76 ~gv~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~-~~~~~~ 151 (485)
T 1rzu_A 76 ERLDLLILDAP---AYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTP-VYMRYA 151 (485)
T ss_dssp TTEEEEEEECH---HHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHH-HHHHHS
T ss_pred CCCEEEEEECH---HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHH-HHHHHC
T ss_conf 69569998486---77277766558865666530679999999999999998615799988996463055789-997310
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHH---
Q ss_conf 65899998099983289777888724564219951113786533566422101056578443368997081268740---
Q 002628 663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG--- 739 (899)
Q Consensus 663 a~~gL~g~PiVlTIHn~e~qG~~p~~~L~~~GL~~~~l~~pdrLqd~~~~~~inllK~ai~~AD~VITVS~s~aqe~--- 739 (899)
...++|+|+|+|+..+.+.++...+..+|++...+. ++.+. ++....+++..+..+|.++++|+.+++..
T Consensus 152 ---~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 224 (485)
T 1rzu_A 152 ---ETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFG-MEGIE---YYNDVSFLKGGLQTATALSTVSPSYAEEILTA 224 (485)
T ss_dssp ---SSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSS-TTTTE---ETTEEEHHHHHHHHCSEEEESCHHHHHHTTSH
T ss_pred ---CCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCC-CCCCC---CCCCCCHHHHHHHHCCEEEECCHHHHHHHHCC
T ss_conf ---358997899966754468788778734399803202-00013---25623599988864677996087589998354
Q ss_pred --CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC
Q ss_conf --034101012378828998368558988998510233203422211113318999998099988999849999815777
Q 002628 740 --GQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVP 817 (899)
Q Consensus 740 --g~GL~~lL~~~~~KI~VIpNGID~e~f~Pa~d~~L~~~y~addl~gK~~~K~aLRk~LGLs~~d~dkpLIgfVGRL~p 817 (899)
+.++...+.....++.+||||+|.+.|.|..+..++..|..+++.++..++..+++++|++. .+.++|+|+||+.+
T Consensus 225 ~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~i~~vGrl~~ 302 (485)
T 1rzu_A 225 EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDD--DGSPLFCVISRLTW 302 (485)
T ss_dssp HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCC--SSSCEEEEESCBST
T ss_pred CCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CCCEEEEEECCCCC
T ss_conf 3576658999860688169708986020588665110001243244567886999999629888--99839999725753
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCH--------------------HHHHHHCCEEEECCCCCCCHHHH
Q ss_conf 669999999999811069099999189955---8328--------------------99997648068867867671999
Q 002628 818 QKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQV--------------------YPILLSSFSFLRKHIFNICNLYI 874 (899)
Q Consensus 818 qKGidlLIeAi~~Lle~~vqLVIVG~G~~~---~lqk--------------------e~IlAaADIfVvPS~~EpFGLV~ 874 (899)
+||++.+++|+..+.+.+++|+|+|+|+.. .+++ ..+|++||++|+||.+|+||+++
T Consensus 303 ~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~~~~~ 382 (485)
T 1rzu_A 303 QKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQ 382 (485)
T ss_dssp TTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCCCHHH
T ss_conf 12879999999998726956999968946899999999986788689943899799999985299999784468877799
Q ss_pred HHHCCCCCCCCC
Q ss_conf 998159961016
Q 002628 875 KLGQGGDLTVNN 886 (899)
Q Consensus 875 LEAMa~gl~Vi~ 886 (899)
+|||++|+||+.
T Consensus 383 lEAma~G~PvI~ 394 (485)
T 1rzu_A 383 LYALRYGCIPVV 394 (485)
T ss_dssp HHHHHHTCEEEE
T ss_pred HHHHHCCCCEEE
T ss_conf 999977997798
No 3
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=315.06 Aligned_cols=357 Identities=28% Similarity=0.483 Sum_probs=248.4
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEE
Q ss_conf 76799827557766679189999999999997899299995289987521123233222012002577411120354210
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MkILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~~~syfdG~~~~~rVw~~~v 591 (899)
|||++|+.+++|....||++.++..|+++|.++||+|+|+++.++..... ........ ... .+++ ...+.....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~~-~~~-~~~~---~~~~~~~~~ 74 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRG-VTDAQVVS-RRD-TFAG---HITLLFGHY 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHH-CTTCEEEE-EEC-CTTC---CEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCEEEE-EEC-CCCC---CEEEEEEEE
T ss_conf 96999964104665677399999999999997498789994476434543-45640578-741-5687---179999987
Q ss_pred CCEEEEEECCCCCCCCCCCCC-CCC------CCCCHHHHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 890099927999986554687-778------88503567787999999999809--996099988881446999999863
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQ-FYG------EHDDFRRFSFFSRAALELLLQAG--KQPDIIHCHDWQTAFVAPLYWDLY 662 (899)
Q Consensus 592 eGI~V~lIe~~~p~~~F~r~~-~Yg------~~dd~~Rfs~FsraalelLkq~~--~kPDIIH~HdW~talVapl~l~~y 662 (899)
.|+++++++.. .++.+.. +|+ +.++..++.+|+.++..+++... .+|||||+|+|.+++++ .+....
T Consensus 75 ~gv~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~-~~~~~~ 150 (485)
T 2qzs_A 75 NGVGIYLIDAP---HLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAP-AYLAAR 150 (485)
T ss_dssp TTEEEEEEECH---HHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHH-HHHHHT
T ss_pred CCCEEEEEECH---HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH-HHHHHC
T ss_conf 89479997082---65068987667754577873589999999999999998456789978996062133789-997543
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHH---
Q ss_conf 65899998099983289777888724564219951113786533566422101056578443368997081268740---
Q 002628 663 VPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG--- 739 (899)
Q Consensus 663 a~~gL~g~PiVlTIHn~e~qG~~p~~~L~~~GL~~~~l~~pdrLqd~~~~~~inllK~ai~~AD~VITVS~s~aqe~--- 739 (899)
..++|+|+|+|+..+.+.++...+..+|++...+. ...+. +.....+++..+..+|.++++|+.+++..
T Consensus 151 ----~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 222 (485)
T 2qzs_A 151 ----GRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN-IHGLE---FNGQISFLKAGLYYADHITAVSPTYAREITEP 222 (485)
T ss_dssp ----TCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCS-TTTTE---ETTEEEHHHHHHHHCSEEEESSHHHHHHTTSH
T ss_pred ----CCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHCC-CCCCC---CCCCCCHHHHHHHHCCEEEECCHHHHHHHHCC
T ss_conf ----68997899946841357889888876499913213-11123---24654699999875386885688999998540
Q ss_pred --CCCCCCCCCCCC--CCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECC
Q ss_conf --034101012378--8289983685589889985102332034222111133189999980999889998499998157
Q 002628 740 --GQGLHSTLNFHS--KKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRL 815 (899)
Q Consensus 740 --g~GL~~lL~~~~--~KI~VIpNGID~e~f~Pa~d~~L~~~y~addl~gK~~~K~aLRk~LGLs~~d~dkpLIgfVGRL 815 (899)
+.++...+.... .++.+||||+|.+.|.|..+..++.+|+.+++.++..++..+++++|+++ +.+.++|+|+||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~i~~vGrl 301 (485)
T 2qzs_A 223 QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKV-DDKVPLFAVVSRL 301 (485)
T ss_dssp HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCC-CTTSCEEEEEEEE
T ss_pred CCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCEEEEEECCC
T ss_conf 147246899985066786699746987664586444222123663006577884999998719888-9997399996667
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC---CCC-----------------H---HHHHHHCCEEEECCCCCCCHH
Q ss_conf 77669999999999811069099999189955---832-----------------8---999976480688678676719
Q 002628 816 VPQKGVHLIRHAIYRTLELGGQFILLGSSPVP---HIQ-----------------V---YPILLSSFSFLRKHIFNICNL 872 (899)
Q Consensus 816 ~pqKGidlLIeAi~~Lle~~vqLVIVG~G~~~---~lq-----------------k---e~IlAaADIfVvPS~~EpFGL 872 (899)
.++||++.+++|+..+.+.+++|+|+|+|+.. .++ . ..+|++||++|+||.+|+||+
T Consensus 302 ~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g~ 381 (485)
T 2qzs_A 302 TSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGL 381 (485)
T ss_dssp SGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCH
T ss_conf 54358799999999986279489999289567899999999757993899478997999999975889997885678767
Q ss_pred HHHHHCCCCCCCCCC
Q ss_conf 999981599610169
Q 002628 873 YIKLGQGGDLTVNNN 887 (899)
Q Consensus 873 V~LEAMa~gl~Vi~~ 887 (899)
+++|||++|+||+..
T Consensus 382 ~~lEAma~G~PvI~s 396 (485)
T 2qzs_A 382 TQLYGLKYGTLPLVR 396 (485)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHCCCCEEEC
T ss_conf 999999779977987
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=296.00 Aligned_cols=330 Identities=26% Similarity=0.329 Sum_probs=243.1
Q ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEE
Q ss_conf 98767998275577666791899999999999978992999952899875211232332220120025774111203542
Q 002628 510 SGLHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVS 589 (899)
Q Consensus 510 ~~MkILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~~~syfdG~~~~~rVw~~ 589 (899)
++|||++|+.+++| ...||++.++..|+++|.++||+|+|++|.++.........++ + + +.....+++..
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~---~-----~-~~~~~~~~~~~ 70 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIR---V-----F-GEEVQVKVSYE 70 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEE---E-----T-TEEEEEEEEEE
T ss_pred CCEEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCC---C-----C-CCCCCEEEEEC
T ss_conf 95289999502177-6668899999999999997798599983677882365524630---1-----4-76531024312
Q ss_pred EECCEEEEEECCCCCCCCCCCCCCCC-CCCC-HHHHHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 10890099927999986554687778-8850-356778799999999980---999609998888144699999986365
Q 002628 590 TIEGLPVYFIEPHHPDKFFWRGQFYG-EHDD-FRRFSFFSRAALELLLQA---GKQPDIIHCHDWQTAFVAPLYWDLYVP 664 (899)
Q Consensus 590 ~veGI~V~lIe~~~p~~~F~r~~~Yg-~~dd-~~Rfs~FsraalelLkq~---~~kPDIIH~HdW~talVapl~l~~ya~ 664 (899)
...|++++.++. .+|.+...|+ +.++ ..++..|++++..++++. ..+|||||+|+|..++++ .+....
T Consensus 71 ~~~gv~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~-~~~~~~-- 143 (439)
T 3fro_A 71 ERGNLRIYRIGG----GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAG-ALIKKY-- 143 (439)
T ss_dssp EETTEEEEEEES----GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHH-HHHHHH--
T ss_pred CCCCCEEEEECC----HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH-HHHHHC--
T ss_conf 578840899353----2205212466776300232578999999999997444799819994640343458-988652--
Q ss_pred CCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHHCCCCC
Q ss_conf 89999809998328977788872456421995111378653356642210105657844336899708126874003410
Q 002628 665 KGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQGLH 744 (899)
Q Consensus 665 ~gL~g~PiVlTIHn~e~qG~~p~~~L~~~GL~~~~l~~pdrLqd~~~~~~inllK~ai~~AD~VITVS~s~aqe~g~GL~ 744 (899)
.++|+|+|+|+....+ .+.......++.. ..+.....+++..+..+|.++++|+.+++. ..
T Consensus 144 ---~~~~~v~~~h~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~----~~ 204 (439)
T 3fro_A 144 ---FKIPAVFTIHRLNKSK-LPAFYFHEAGLSE-----------LAPYPDIDPEHTGGYIADIVTTVSRGYLID----EW 204 (439)
T ss_dssp ---HCCCEEEEESCCCCCC-EEHHHHHHTTCGG-----------GCCSSEECHHHHHHHHCSEEEESCHHHHHH----TH
T ss_pred ---CCCCEEEEECCCCCCC-CCHHHHCCCCCCC-----------CCCCCEEEHHHHHHHHCCEEEECCHHHHHH----HH
T ss_conf ---6997899965344456-8567747455100-----------356663207666554345887268989999----86
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC-CCCCHHH
Q ss_conf 101237882899836855898899851023320342221111331899999809998899984999981577-7669999
Q 002628 745 STLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLV-PQKGVHL 823 (899)
Q Consensus 745 ~lL~~~~~KI~VIpNGID~e~f~Pa~d~~L~~~y~addl~gK~~~K~aLRk~LGLs~~d~dkpLIgfVGRL~-pqKGidl 823 (899)
+.+.....++.+||||+|.+.|.|...+ ..+...+..+++++|+++ + ++|+|+||+. ++||++.
T Consensus 205 ~~~~~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~-~~i~~~G~~~~~~Kg~~~ 269 (439)
T 3fro_A 205 GFFRNFEGKITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDE---G-VTFMFIGRFDRGQKGVDV 269 (439)
T ss_dssp HHHGGGTTSEEECCCCCCTTTSCGGGSC-----------SCHHHHHHHHHHHHTCCS---C-EEEEEECCSSCTTBCHHH
T ss_pred HHHHHCCCCEEECCCCCCCHHCCCCCCC-----------CHHHHHHHHHHHHCCCCC---C-CEEEEECCCCCCCCCHHH
T ss_conf 0565047734534788880430843221-----------104566999999739999---8-479997333534366999
Q ss_pred HHHHHHHHHC----CCCEEEEECCCCCC--C-CC-----------------HH---HHHHHCCEEEECCCCCCCHHHHHH
Q ss_conf 9999998110----69099999189955--8-32-----------------89---999764806886786767199999
Q 002628 824 IRHAIYRTLE----LGGQFILLGSSPVP--H-IQ-----------------VY---PILLSSFSFLRKHIFNICNLYIKL 876 (899)
Q Consensus 824 LIeAi~~Lle----~~vqLVIVG~G~~~--~-lq-----------------ke---~IlAaADIfVvPS~~EpFGLV~LE 876 (899)
+++|+..+.+ .+++|+|+|+|+.. . ++ .+ .+|++||++|+||.+|+||++.+|
T Consensus 270 li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~E 349 (439)
T 3fro_A 270 LLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALE 349 (439)
T ss_dssp HHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHHH
T ss_conf 99999999854667871899980797267789999875069899972879988999999977999958987886189999
Q ss_pred HCCCCCCCCCCCCC
Q ss_conf 81599610169985
Q 002628 877 GQGGDLTVNNNCEP 890 (899)
Q Consensus 877 AMa~gl~Vi~~v~~ 890 (899)
||++|+||+..-.|
T Consensus 350 Ama~G~Pvi~s~~~ 363 (439)
T 3fro_A 350 AMCLGAIPIASAVG 363 (439)
T ss_dssp HHHTTCEEEEESST
T ss_pred HHHCCCCEEECCCC
T ss_conf 99779976973788
No 5
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=1.00 E-value=1 Score=273.15 Aligned_cols=344 Identities=16% Similarity=0.099 Sum_probs=223.0
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHH-HHHCCCEEEEEEECCCCCCCCCCCCCCCCCEE--------EEE-----CCC
Q ss_conf 6799827557766679189999999999-99789929999528998752112323322201--------200-----257
Q 002628 513 HVIHIAAEMAPVAKVGGLGDVVAGLGKA-LQKKGHLVEIVLPKYDCMQYDRIDDLRALDVV--------VES-----YFD 578 (899)
Q Consensus 513 kILhIs~E~~P~akvGGLg~vV~~LArA-Lqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~--------~~s-----yfd 578 (899)
-+.-+++|.+- +|||+-+|+..-|.. ..+.|-....|-|........+++.+..-+.. +.. .-.
T Consensus 29 ~lfE~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (725)
T 3nb0_A 29 LLFETATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESR 106 (725)
T ss_dssp EEEEEETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTT
T ss_pred EEEEEEHHHHC--CCCCEEEEEECCHHHHHHHHCCEEEEECCCCCCCCCCCEEECCCCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 57762534421--5577678873343678998689279988888776786135568888033200047999999999978
Q ss_pred CCCCCCEEEEEEECCEEEE-EECCCCCCCCCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHHHHC-CC
Q ss_conf 7411120354210890099-9279999865546----------------8777888503567787999999999809-99
Q 002628 579 GRLFKNKVWVSTIEGLPVY-FIEPHHPDKFFWR----------------GQFYGEHDDFRRFSFFSRAALELLLQAG-KQ 640 (899)
Q Consensus 579 G~~~~~rVw~~~veGI~V~-lIe~~~p~~~F~r----------------~~~Yg~~dd~~Rfs~FsraalelLkq~~-~k 640 (899)
|- ++++.+..++|-|.+ +++.. .+++. +..|++.++..+|+||+.++++.+.... +.
T Consensus 107 G~--~v~~GrW~i~G~P~viL~d~~---~~~~~~~~~~~~lw~~~~i~s~~~yg~~dd~~~F~y~~~avl~~l~~~~~~~ 181 (725)
T 3nb0_A 107 GV--HFVYGRWLIEGAPKVILFDLD---SVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQH 181 (725)
T ss_dssp TC--CEEEEEESSTTCCEEEEECSG---GGGGGHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred CC--EEEEEEEECCCCCEEEEEECH---HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99--189988854998569999670---7888899999999998684998766521189999999999999988627899
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC---C---CCCCCH-HHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6099988881446999999863658999980999832897---7---788872-45642199511137865335664221
Q 002628 641 PDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFE---Y---QGTAPA-KELASCGLDVQQLNRPDRMQDNSAHD 713 (899)
Q Consensus 641 PDIIH~HdW~talVapl~l~~ya~~gL~g~PiVlTIHn~e---~---qG~~p~-~~L~~~GL~~~~l~~pdrLqd~~~~~ 713 (899)
|||+|||||+++++ +.+++.. ..++++|+|+|+.. + +|..+. ..+...+.+... ..++ ++.
T Consensus 182 pdIiH~HDW~tg~~-~~~Lk~~----~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea----~~~~---i~~ 249 (725)
T 3nb0_A 182 AIVAHFHEWLAGVA-LPLCRKR----RIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEA----GRFG---IYH 249 (725)
T ss_dssp EEEEEEESGGGCTH-HHHHHHT----TCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHH----HHTT---CHH
T ss_pred CCEEEECCHHHHHH-HHHHHHH----CCCCCEEEEEECCHHHHHHHHCCCCCHHHHHHHCCCCHHH----HHHC---HHH
T ss_conf 84799473666289-9999975----7899899997016466656524897354435550897344----4311---068
Q ss_pred CHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 01056578443368997081268740034101012378828998368558988998510233203422211113318999
Q 002628 714 RINPLKGAIVFSNIVTTVSPSYAQEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESI 793 (899)
Q Consensus 714 ~inllK~ai~~AD~VITVS~s~aqe~g~GL~~lL~~~~~KI~VIpNGID~e~f~Pa~d~~L~~~y~addl~gK~~~K~aL 793 (899)
..+++|+++.+||.|||||+.++++ +..++.....++ ||||||++.|+|... ....|..+|..+
T Consensus 250 ~~~~EKaga~~AD~ITTVS~~yA~E----i~~Ll~r~~d~i--IpNGID~~~f~p~~~----------~~~~k~~aK~kl 313 (725)
T 3nb0_A 250 RYCIERAAAHSADVFTTVSQITAFE----AEHLLKRKPDGI--LPNGLNVIKFQAFHE----------FQNLHALKKEKI 313 (725)
T ss_dssp HHHHHHHHHHHSSEEEESSHHHHHH----HHHHTSSCCSEE--CCCCBCCCCCSSTTH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEECCHHHHHH----HHHHHCCCCCEE--ECCCCCCCCCCCCHH----------HHHHHHHHHHHH
T ss_conf 8899999997489999899899999----999966999879--758810354584135----------677799999999
Q ss_pred HHHC------CCCCCCCCCCEEEEEECCC-CCCCHHHHHHHHHHHHCC---------CCEEEEECCCCC-----------
Q ss_conf 9980------9998899984999981577-766999999999981106---------909999918995-----------
Q 002628 794 RKHL------GLSSADARKPLVGCITRLV-PQKGVHLIRHAIYRTLEL---------GGQFILLGSSPV----------- 846 (899)
Q Consensus 794 Rk~L------GLs~~d~dkpLIgfVGRL~-pqKGidlLIeAi~~Lle~---------~vqLVIVG~G~~----------- 846 (899)
++.+ |++-..++.++|+.+||++ .+||+|++++|+.++... -+.|+|+..+..
T Consensus 314 q~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~ 393 (725)
T 3nb0_A 314 NDFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQA 393 (725)
T ss_dssp HHHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCHH
T ss_conf 99987630467788977604999999832344887999999999999876346898379999937877887666631135
Q ss_pred ------------------------------------C-CC------------CH--------------------------
Q ss_conf ------------------------------------5-83------------28--------------------------
Q 002628 847 ------------------------------------P-HI------------QV-------------------------- 851 (899)
Q Consensus 847 ------------------------------------~-~l------------qk-------------------------- 851 (899)
+ +. ++
T Consensus 394 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D 473 (725)
T 3nb0_A 394 EVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDAND 473 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 89999989999999876889999740534455777898988863967778888887764047788997366603557754
Q ss_pred -------H--------------------------------HHHHHCCEEEECCCCCCCHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf -------9--------------------------------99976480688678676719999981599610-1699854
Q 002628 852 -------Y--------------------------------PILLSSFSFLRKHIFNICNLYIKLGQGGDLTV-NNNCEPW 891 (899)
Q Consensus 852 -------e--------------------------------~IlAaADIfVvPS~~EpFGLV~LEAMa~gl~V-i~~v~~~ 891 (899)
+ .+|++||+||+||.+||||++++|||++|+|| .+++.|+
T Consensus 474 ~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~ 553 (725)
T 3nb0_A 474 LILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGF 553 (725)
T ss_dssp HHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHH
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCH
T ss_conf 89999986487777677454999333147888641027899986465999656657887899999981998899279970
No 6
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=268.01 Aligned_cols=356 Identities=15% Similarity=0.137 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC---------CCCCCCCHHHHHHH--------HHHHHHHCCCEE
Q ss_conf 6654221245677552026889999876799827557---------76667918999999--------999999789929
Q 002628 486 MECKEKNEHEAISTFLKLTSSSISSGLHVIHIAAEMA---------PVAKVGGLGDVVAG--------LGKALQKKGHLV 548 (899)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~MkILhIs~E~~---------P~akvGGLg~vV~~--------LArALqk~GHeV 548 (899)
.++-+..|+..+..|++.... .|+|++|+...+ | ..||..+||.+ |+++|.++||+|
T Consensus 257 ~~~~~~p~~~~~~~~~~~~~~----~~~i~~is~hg~~~~~~~lG~~--dtGGq~vyV~e~~~al~~ela~~L~~~G~~V 330 (816)
T 3s28_A 257 LDLLEAPDPCTLETFLGRVPM----VFNVVILSPHGYFAQDNVLGYP--DTGGQVVYILDQVRALEIEMLQRIKQQGLNI 330 (816)
T ss_dssp HHHHHSCCHHHHHHHHHHSCC----CCEEEEECCSSCCCSSSCTTST--TCSHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCCCCCHHHHHCCCCC----EEEEEEECCCCCCCCCCCCCCC--CCCCCEEEHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 998519996307777365885----2489998477665754457888--8898365099899899999999999779962
Q ss_pred E----EEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEECCCCC----CCCCCCCCCCCCCCCH
Q ss_conf 9----9952899875211232332220120025774111203542108900999279999----8655468777888503
Q 002628 549 E----IVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHP----DKFFWRGQFYGEHDDF 620 (899)
Q Consensus 549 t----VItPkY~~l~~~~v~~L~~i~v~~~syfdG~~~~~rVw~~~veGI~V~lIe~~~p----~~~F~r~~~Yg~~dd~ 620 (899)
+ |+|...+..... . +..+. ......+|++++.++.... ..|+.+..++++
T Consensus 331 ~~~V~v~Tr~~~~~~g~------~--------y~~~~----e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~---- 388 (816)
T 3s28_A 331 KPRILILTRLLPDAVGT------T--------CGERL----ERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPY---- 388 (816)
T ss_dssp CCEEEEEEECCTTCTTS------S--------TTSSE----EECTTCSSEEEEEECEEETTEEECSCCCTTTCGGG----
T ss_pred CEEEEEEECCCCCCCCC------C--------CCCCC----EEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH----
T ss_conf 00168996898787777------6--------57751----15548697599996687766543345657788999----
Q ss_pred HHHHHHH-HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 5677879-999999998099960999888814469999998636589999809998328977788872456421995111
Q 002628 621 RRFSFFS-RAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699 (899)
Q Consensus 621 ~Rfs~Fs-raalelLkq~~~kPDIIH~HdW~talVapl~l~~ya~~gL~g~PiVlTIHn~e~qG~~p~~~L~~~GL~~~~ 699 (899)
...|. ..+..+++..+.+|||||+|.|.+++++.+.... .++|+|+|.|++....... .+.....
T Consensus 389 --L~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~------~gvP~V~T~Hsl~~~k~~~------~~~~~~~ 454 (816)
T 3s28_A 389 --LETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKYPD------SDIYWKK 454 (816)
T ss_dssp --HHHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH------HTCCEEEECSCCHHHHSTT------TTTTHHH
T ss_pred --HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH------CCCCEEEEEECCCCCCCCC------CCCHHHH
T ss_conf --9999999999999965899739996885389999999997------5998899981663001222------3301556
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHH----H-CCCCC------CCC------CCCCCCEEEEECCCC
Q ss_conf 378653356642210105657844336899708126874----0-03410------101------237882899836855
Q 002628 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE----G-GQGLH------STL------NFHSKKFVGILNGID 762 (899)
Q Consensus 700 l~~pdrLqd~~~~~~inllK~ai~~AD~VITVS~s~aqe----~-g~GL~------~lL------~~~~~KI~VIpNGID 762 (899)
+ ...+.+..++..++.++..||.|+++|+..++. . .++.. .+. .....|+.+||||+|
T Consensus 455 ~-----~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD 529 (816)
T 3s28_A 455 L-----DDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD 529 (816)
T ss_dssp H-----HHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCC
T ss_pred H-----HHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCC
T ss_conf 7-----78888988888999999849999988899999999888776442013541122101224467788799889747
Q ss_pred CCCCCCCCCHH--HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC--CCCEE
Q ss_conf 89889985102--332034222111133189999980999889998499998157776699999999998110--69099
Q 002628 763 TDAWNPATDTF--LKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIYRTLE--LGGQF 838 (899)
Q Consensus 763 ~e~f~Pa~d~~--L~~~y~addl~gK~~~K~aLRk~LGLs~~d~dkpLIgfVGRL~pqKGidlLIeAi~~Lle--~~vqL 838 (899)
.+.|.|..+.. +...+.. +.....++...++.+|+.. ++++++|+|+||+.++||++.+++|+..+.+ .+++|
T Consensus 530 ~~~F~P~~~~~~Rl~~~~~~--i~~~l~~p~~~r~~lg~l~-~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~L 606 (816)
T 3s28_A 530 MSIYFPYTEEKRRLTKFHSE--IEELLYSDVENKEHLCVLK-DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANL 606 (816)
T ss_dssp TTTSCCTTCTTTCCGGGHHH--HHHHHHCSCCBTTEESCBS-CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEE
T ss_pred HHHCCCCCHHHHHHHHCCCC--CCCCCCCHHHHHHHHCCCC-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 88728631035543200232--0001246056777744457-89983999974472217999999999997855799699
Q ss_pred EEECCCCCC------------CCC--------------------H---H---HHHH-HCCEEEECCCCCCCHHHHHHHCC
Q ss_conf 999189955------------832--------------------8---9---9997-64806886786767199999815
Q 002628 839 ILLGSSPVP------------HIQ--------------------V---Y---PILL-SSFSFLRKHIFNICNLYIKLGQG 879 (899)
Q Consensus 839 VIVG~G~~~------------~lq--------------------k---e---~IlA-aADIfVvPS~~EpFGLV~LEAMa 879 (899)
+|+|+|+.. .++ . . .+|+ ++|+||+||.+|+||++++|||+
T Consensus 607 vIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA 686 (816)
T 3s28_A 607 VVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMT 686 (816)
T ss_dssp EEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99968875333433569999999999997499872898167556689999999999569099988875576499999998
Q ss_pred CCCCCCCCCCCC
Q ss_conf 996101699854
Q 002628 880 GDLTVNNNCEPW 891 (899)
Q Consensus 880 ~gl~Vi~~v~~~ 891 (899)
+|+||+....|-
T Consensus 687 ~G~PVIasd~GG 698 (816)
T 3s28_A 687 CGLPTFATCKGG 698 (816)
T ss_dssp TTCCEEEESSBT
T ss_pred CCCCEEEECCCC
T ss_conf 099999968987
No 7
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=254.79 Aligned_cols=319 Identities=16% Similarity=0.152 Sum_probs=204.1
Q ss_pred CCCEEEEECCCCCCCC---------CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 9876799827557766---------6791899999999999978992999952899875211232332220120025774
Q 002628 510 SGLHVIHIAAEMAPVA---------KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGR 580 (899)
Q Consensus 510 ~~MkILhIs~E~~P~a---------kvGGLg~vV~~LArALqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~~~syfdG~ 580 (899)
++|||++|+..++|.. ..||.+.++..++++|.+.||+|+|+++........ .. ..
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---~~-----------~~- 70 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWP---EF-----------SG- 70 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBG---GG-----------CC-
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CH-----------HH-
T ss_conf 4524999965777443442347888879943349999999985598489995788723365---11-----------35-
Q ss_pred CCCCEEEEE-EECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 111203542-1089009992799998655468777888503567787999999999809996099988881446999999
Q 002628 581 LFKNKVWVS-TIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYW 659 (899)
Q Consensus 581 ~~~~rVw~~-~veGI~V~lIe~~~p~~~F~r~~~Yg~~dd~~Rfs~FsraalelLkq~~~kPDIIH~HdW~talVapl~l 659 (899)
.+... ...|++++.++... ..++....++ ..+..|...+..++++...+|||||+|.+..++++.+ +
T Consensus 71 ----~~~~~~~~~gv~v~~~~~~~-~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~-~ 138 (499)
T 2r60_A 71 ----EIDYYQETNKVRIVRIPFGG-DKFLPKEELW------PYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVL-L 138 (499)
T ss_dssp ----SEEECTTCSSEEEEEECCSC-SSCCCGGGCG------GGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHH-H
T ss_pred ----HHHHCCCCCCEEEEEECCCC-CCCCCHHHHH------HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-H
T ss_conf ----67750678981799825777-6776889999------9899999999999985389988899757862079999-8
Q ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHH
Q ss_conf 86365899998099983289777888724564219951113786533566422101056578443368997081268740
Q 002628 660 DLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEG 739 (899)
Q Consensus 660 ~~ya~~gL~g~PiVlTIHn~e~qG~~p~~~L~~~GL~~~~l~~pdrLqd~~~~~~inllK~ai~~AD~VITVS~s~aqe~ 739 (899)
.. ..++|+|+|+|+...... ..+...+.....+ .....+.....+++..+..+|.++++|+..++.
T Consensus 139 ~~-----~~~~p~v~~~H~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~- 204 (499)
T 2r60_A 139 KN-----IKGLPFTFTGHSLGAQKM---EKLNVNTSNFKEM-----DERFKFHRRIIAERLTMSYADKIIVSTSQERFG- 204 (499)
T ss_dssp HH-----HHCCCEEEECSSCHHHHH---HTTCCCSTTSHHH-----HHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHH-
T ss_pred HH-----HCCCCEEEECCCCCCCCC---HHHCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHH-
T ss_conf 87-----359968998068400111---3441478776124-----556788899999999984689999888899999-
Q ss_pred CCCCCCC--CC-C----CCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCC-----CCCCCCCCC
Q ss_conf 0341010--12-3----7882899836855898899851023320342221111331899999809-----998899984
Q 002628 740 GQGLHST--LN-F----HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLG-----LSSADARKP 807 (899)
Q Consensus 740 g~GL~~l--L~-~----~~~KI~VIpNGID~e~f~Pa~d~~L~~~y~addl~gK~~~K~aLRk~LG-----Ls~~d~dkp 807 (899)
+... ++ . ...++.+||||+|.+.|.|... ...+..+|+++| ++ .+.+
T Consensus 205 ---~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~---------------~~~~~~~r~~~~~~~~~~~---~~~~ 263 (499)
T 2r60_A 205 ---QYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYG---------------DKIKAKITKYLERDLGSER---MELP 263 (499)
T ss_dssp ---TTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCC---------------HHHHHHHHHHHHHHSCGGG---TTSC
T ss_pred ---HHHHHCCCCCCCCCCCCCEEEECCCCCHHHCCCCCH---------------HHHHHHHHHHHCCCCCCCC---CCCC
T ss_conf ---986412464223467887699879958665686410---------------3567899988364334568---8876
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCC---CCEEEEECC--CC--------------CCCCCH-----------------
Q ss_conf 999981577766999999999981106---909999918--99--------------558328-----------------
Q 002628 808 LVGCITRLVPQKGVHLIRHAIYRTLEL---GGQFILLGS--SP--------------VPHIQV----------------- 851 (899)
Q Consensus 808 LIgfVGRL~pqKGidlLIeAi~~Lle~---~vqLVIVG~--G~--------------~~~lqk----------------- 851 (899)
+|+|+||+.++||++.+++|+..+.+. ...++|+|+ |+ ...+++
T Consensus 264 ~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v 343 (499)
T 2r60_A 264 AIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLN 343 (499)
T ss_dssp EEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 89996068501588999999999987388865999987888753221111320147999999999864998609987889
Q ss_pred ---H--HHHHHC----CEEEECCCCCCCHHHHHHHCCCCCCCCC-CCCC
Q ss_conf ---9--999764----8068867867671999998159961016-9985
Q 002628 852 ---Y--PILLSS----FSFLRKHIFNICNLYIKLGQGGDLTVNN-NCEP 890 (899)
Q Consensus 852 ---e--~IlAaA----DIfVvPS~~EpFGLV~LEAMa~gl~Vi~-~v~~ 890 (899)
+ .+|++| |++|+||.+|+||++.+|||++|+||+. ++.|
T Consensus 344 ~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g 392 (499)
T 2r60_A 344 SQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGG 392 (499)
T ss_dssp SHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBH
T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCC
T ss_conf 9899999999557679889978645897968999997699889816887
No 8
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=249.51 Aligned_cols=302 Identities=17% Similarity=0.189 Sum_probs=202.0
Q ss_pred CCCCCEEEEECCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 999876799827557766-----679189999999999997899299995289987521123233222012002577411
Q 002628 508 ISSGLHVIHIAAEMAPVA-----KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLF 582 (899)
Q Consensus 508 ~~~~MkILhIs~E~~P~a-----kvGGLg~vV~~LArALqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~~~syfdG~~~ 582 (899)
..++|||++|+..++|.. ..||.+.++..++++|.+.||+|+|+++........
T Consensus 17 ~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------- 75 (438)
T 3c48_A 17 RGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE--------------------- 75 (438)
T ss_dssp --CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS---------------------
T ss_pred CCCHHEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---------------------
T ss_conf 70020334577532563467878878799999999999996699799995478877754---------------------
Q ss_pred CCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 120354210890099927999986554687778885035677879999999-9980999609998888144699999986
Q 002628 583 KNKVWVSTIEGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALEL-LLQAGKQPDIIHCHDWQTAFVAPLYWDL 661 (899)
Q Consensus 583 ~~rVw~~~veGI~V~lIe~~~p~~~F~r~~~Yg~~dd~~Rfs~Fsraalel-Lkq~~~kPDIIH~HdW~talVapl~l~~ 661 (899)
......|++++.+.... +. .+...+-...+..|.+.+..+ +++. .+|||||+|+|..++++.. +..
T Consensus 76 ----~~~~~~~v~v~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~-~~~ 142 (438)
T 3c48_A 76 ----IVRVAENLRVINIAAGP----YE---GLSKEELPTQLAAFTGGMLSFTRREK-VTYDLIHSHYWLSGQVGWL-LRD 142 (438)
T ss_dssp ----EEEEETTEEEEEECCSC----SS---SCCGGGGGGGHHHHHHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHH-HHH
T ss_pred ----CCCCCCCEEEEEECCCC----CC---CCCHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHH-HHH
T ss_conf ----00256874899924787----54---32366778999999999999998416-8999899477557899999-999
Q ss_pred HCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHHCC
Q ss_conf 36589999809998328977788872456421995111378653356642210105657844336899708126874003
Q 002628 662 YVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGGQ 741 (899)
Q Consensus 662 ya~~gL~g~PiVlTIHn~e~qG~~p~~~L~~~GL~~~~l~~pdrLqd~~~~~~inllK~ai~~AD~VITVS~s~aqe~g~ 741 (899)
..++|+|+|+|+........ +. .+.. .. ......+.+..+..+|.++++|+..++.
T Consensus 143 -----~~~~p~v~~~h~~~~~~~~~---~~-~~~~---------~~---~~~~~~~~~~~~~~~d~ii~~s~~~~~~--- 198 (438)
T 3c48_A 143 -----LWRIPLIHTAHTLAAVKNSY---RD-DSDT---------PE---SEARRICEQQLVDNADVLAVNTQEEMQD--- 198 (438)
T ss_dssp -----HHTCCEEEECSSCHHHHSCC--------CC---------HH---HHHHHHHHHHHHHHCSEEEESSHHHHHH---
T ss_pred -----HCCCCEEEEECCCCCCCCCC---CC-CCCC---------CC---HHHHHHHHHHHHHCCCEEEECCHHHHHH---
T ss_conf -----74999899942774011111---00-2677---------31---5789999999984089999847999999---
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCH
Q ss_conf 41010123788289983685589889985102332034222111133189999980999889998499998157776699
Q 002628 742 GLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGV 821 (899)
Q Consensus 742 GL~~lL~~~~~KI~VIpNGID~e~f~Pa~d~~L~~~y~addl~gK~~~K~aLRk~LGLs~~d~dkpLIgfVGRL~pqKGi 821 (899)
+...++....++.+||||+|.+.|.|.. ...+..+++.+|++ ++.++|+|+||+.++||+
T Consensus 199 -~~~~~g~~~~k~~vi~ngvd~~~~~~~~----------------~~~~~~~r~~~~~~---~~~~~i~~~G~~~~~Kg~ 258 (438)
T 3c48_A 199 -LMHHYDADPDRISVVSPGADVELYSPGN----------------DRATERSRRELGIP---LHTKVVAFVGRLQPFKGP 258 (438)
T ss_dssp -HHHHHCCCGGGEEECCCCCCTTTSCCC--------------------CHHHHHHTTCC---SSSEEEEEESCBSGGGCH
T ss_pred -HHHHHCCCHHHEEEECCCCCCCCCCCCC----------------CCHHHHHHHHCCCC---CCCCEEEEEEEECCCCCH
T ss_conf -9998589820268826976611047866----------------20245668860899---898489997431566798
Q ss_pred HHHHHHHHHHHCC----CCEEEEECC----CCCCC-CCH--------------------H--HHHHHCCEEEECCCCCCC
Q ss_conf 9999999981106----909999918----99558-328--------------------9--999764806886786767
Q 002628 822 HLIRHAIYRTLEL----GGQFILLGS----SPVPH-IQV--------------------Y--PILLSSFSFLRKHIFNIC 870 (899)
Q Consensus 822 dlLIeAi~~Lle~----~vqLVIVG~----G~~~~-lqk--------------------e--~IlAaADIfVvPS~~EpF 870 (899)
+.+++|+..+.+. +++|+|+|. |+... +++ + .+|+.||++|+||.+|+|
T Consensus 259 ~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~ 338 (438)
T 3c48_A 259 QVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESF 338 (438)
T ss_dssp HHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSS
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCEEEECCCCCCC
T ss_conf 99999999999639776669999818887772789999999971987868985889858899999858999987402687
Q ss_pred HHHHHHHCCCCCCCCCC
Q ss_conf 19999981599610169
Q 002628 871 NLYIKLGQGGDLTVNNN 887 (899)
Q Consensus 871 GLV~LEAMa~gl~Vi~~ 887 (899)
|++.+|||++|+||+..
T Consensus 339 ~~~~~Eama~G~PvI~~ 355 (438)
T 3c48_A 339 GLVAMEAQASGTPVIAA 355 (438)
T ss_dssp CHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHCCCCEEEC
T ss_conf 55999998769988962
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=230.86 Aligned_cols=279 Identities=11% Similarity=0.121 Sum_probs=187.1
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEE
Q ss_conf 76799827557766679189999999999997899299995289987521123233222012002577411120354210
Q 002628 512 LHVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTI 591 (899)
Q Consensus 512 MkILhIs~E~~P~akvGGLg~vV~~LArALqk~GHeVtVItPkY~~l~~~~v~~L~~i~v~~~syfdG~~~~~rVw~~~v 591 (899)
|||++++..++| .||.+.++..++++|.+.||+|+|+++..... ..
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-------------------------------~~ 46 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGD-------------------------------CP 46 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSC-------------------------------CC
T ss_pred CEEEEEEEECCC---CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-------------------------------CC
T ss_conf 969999721588---76163599999999996798489996489887-------------------------------88
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 89009992799998655468777888503567787999999999809996099988881446999999863658999980
Q 002628 592 EGLPVYFIEPHHPDKFFWRGQFYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSAR 671 (899)
Q Consensus 592 eGI~V~lIe~~~p~~~F~r~~~Yg~~dd~~Rfs~FsraalelLkq~~~kPDIIH~HdW~talVapl~l~~ya~~gL~g~P 671 (899)
+|++++.++.. ... ...++..+.+.+..+++. .+|||||+|++..++. .. +.. .....+
T Consensus 47 ~~~~v~~~~~~---------~~~----~~~~~~~~~~~l~~~i~~--~~~Dvv~~~~~~~~~~-~~----~~~-~~~~~~ 105 (374)
T 2iw1_A 47 KAFELIQVPVK---------SHT----NHGRNAEYYAWVQNHLKE--HPADRVVGFNKMPGLD-VY----FAA-DVCYAE 105 (374)
T ss_dssp TTCEEEECCCC---------CSS----HHHHHHHHHHHHHHHHHH--SCCSEEEESSCCTTCS-EE----ECC-SCCHHH
T ss_pred CCCEEEEECCC---------CCC----CHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCE-EE----ECC-CCCCCE
T ss_conf 77479997168---------644----301677899999999850--6998899966778852-13----001-565421
Q ss_pred EEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCEEEEECHHHHHHHCCCCCCCCCC
Q ss_conf 9998328977788872456421995111378653356642210105657844--33689970812687400341010123
Q 002628 672 VCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAHDRINPLKGAIV--FSNIVTTVSPSYAQEGGQGLHSTLNF 749 (899)
Q Consensus 672 iVlTIHn~e~qG~~p~~~L~~~GL~~~~l~~pdrLqd~~~~~~inllK~ai~--~AD~VITVS~s~aqe~g~GL~~lL~~ 749 (899)
.+.+.|+.... .... +.....+.+..+. .+|.++++|+..++. +...++.
T Consensus 106 ~~~~~~~~~~~--~~~~----------------------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~----~~~~~~~ 157 (374)
T 2iw1_A 106 KVAQEKGFLYR--LTSR----------------------YRHYAAFERATFEQGKSTKLMMLTDKQIAD----FQKHYQT 157 (374)
T ss_dssp HHHHHCCHHHH--TSHH----------------------HHHHHHHHHHHHSTTCCCEEEESCHHHHHH----HHHHHCC
T ss_pred EEEECCCCHHH--HCHH----------------------HHHHHHHHHHHHHCCCCCEEEECCHHHHHH----HHHHHCC
T ss_conf 33303562121--0477----------------------899999999986426775799869899999----9997189
Q ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 78828998368558988998510233203422211113318999998099988999849999815777669999999999
Q 002628 750 HSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLIRHAIY 829 (899)
Q Consensus 750 ~~~KI~VIpNGID~e~f~Pa~d~~L~~~y~addl~gK~~~K~aLRk~LGLs~~d~dkpLIgfVGRL~pqKGidlLIeAi~ 829 (899)
...++.+||||+|.+.|.|.. ....+..+++++|++. +.++|+|+||+.++||++.+++|+.
T Consensus 158 ~~~~~~vi~ngv~~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~~~i~~~G~~~~~K~~~~li~a~~ 219 (374)
T 2iw1_A 158 EPERFQILPPGIYPDRKYSEQ---------------IPNSREIYRQKNGIKE---QQNLLLQVGSDFGRKGVDRSIEALA 219 (374)
T ss_dssp CGGGEEECCCCCCGGGSGGGS---------------CTTHHHHHHHHTTCCT---TCEEEEEECSCTTTTTHHHHHHHHH
T ss_pred CHHHEEEECCCCCHHHCCCCC---------------CHHHHHHHHHHHCCCC---CCEEEEEECCCHHHCCHHHHHHHHH
T ss_conf 711068856985877617644---------------2357999999728997---8729999646410138899999999
Q ss_pred HHHCC---CCEEEEECCCCCCCCCH--------------------HHHHHHCCEEEECCCCCCCHHHHHHHCCCCCCCC-
Q ss_conf 81106---90999991899558328--------------------9999764806886786767199999815996101-
Q 002628 830 RTLEL---GGQFILLGSSPVPHIQV--------------------YPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVN- 885 (899)
Q Consensus 830 ~Lle~---~vqLVIVG~G~~~~lqk--------------------e~IlAaADIfVvPS~~EpFGLV~LEAMa~gl~Vi- 885 (899)
.+.+. +++|+++|+|+...+++ ..+|+.||++++||.+|+||++.+|||++|+||+
T Consensus 220 ~l~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~ 299 (374)
T 2iw1_A 220 SLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT 299 (374)
T ss_dssp TSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHCCEEEECCCCCCCCCHHHHHHHCCCCEEE
T ss_conf 86760488669999708987999999997398773797788403899998468898354247755699999977998898
Q ss_pred CCCCCC
Q ss_conf 699854
Q 002628 886 NNCEPW 891 (899)
Q Consensus 886 ~~v~~~ 891 (899)
+++.|+
T Consensus 300 ~~~~~~ 305 (374)
T 2iw1_A 300 TAVCGY 305 (374)
T ss_dssp ETTSTT
T ss_pred ECCCCC
T ss_conf 269980
No 10
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=1.00 E-value=1 Score=228.62 Aligned_cols=363 Identities=16% Similarity=0.100 Sum_probs=232.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCC-CCCCCCCCCCCCEEEEE------------------CCCCCCCCCEE
Q ss_conf 679189999999999997899299995289987-52112323322201200------------------25774111203
Q 002628 526 KVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCM-QYDRIDDLRALDVVVES------------------YFDGRLFKNKV 586 (899)
Q Consensus 526 kvGGLg~vV~~LArALqk~GHeVtVItPkY~~l-~~~~v~~L~~i~v~~~s------------------yfdG~~~~~rV 586 (899)
..||+|+...+....++..|....-+...|... ..+.+.+-.+++.+-.+ .|.|.......
T Consensus 112 gnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~~g~pwe~~r~~~~~~V~f~g~~v~a~~ 191 (796)
T 2c4m_A 112 GNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCFDDMKTRAIP 191 (796)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSSSCCTTSEECGGGCEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCCEEEECCCCEEEEEECCEEEEEEE
T ss_conf 78708888999999997579986898624158871798258978861776545799604764772789974998999999
Q ss_pred EEEEECC--------EEEEEECCCCCCCC----CCCC-----------------CCCCCCC----CHHHH---HHHHHHH
Q ss_conf 5421089--------00999279999865----5468-----------------7778885----03567---7879999
Q 002628 587 WVSTIEG--------LPVYFIEPHHPDKF----FWRG-----------------QFYGEHD----DFRRF---SFFSRAA 630 (899)
Q Consensus 587 w~~~veG--------I~V~lIe~~~p~~~----F~r~-----------------~~Yg~~d----d~~Rf---s~Fsraa 630 (899)
+...+.| ++++-..+.. .| |..+ .+|+... ...|. .+|+.++
T Consensus 192 yd~pi~gy~~~~~n~lrlW~a~~~~--~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~ 269 (796)
T 2c4m_A 192 YDMPITGYGTHNVGTLRLWKAEPWE--EFDYDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSAS 269 (796)
T ss_dssp EEEEECCTTCCCCEEEEEEEEEESS--SSCHHHHHTTCHHHHHHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCEEEEEEEECCCCC--CCCHHHCCCCCHHHHHHCHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7246567677735899988605663--24654326765656544627561654337699998540988997599999999
Q ss_pred HHH-HHHH-----CC----CCEEEEECCCCHHHHHHHHHHHHCC-CC------C--CCCEEEEEECCCCCCCC--CCHHH
Q ss_conf 999-9980-----99----9609998888144699999986365-89------9--99809998328977788--87245
Q 002628 631 LEL-LLQA-----GK----QPDIIHCHDWQTAFVAPLYWDLYVP-KG------L--NSARVCFTCHNFEYQGT--APAKE 689 (899)
Q Consensus 631 lel-Lkq~-----~~----kPDIIH~HdW~talVapl~l~~ya~-~g------L--~g~PiVlTIHn~e~qG~--~p~~~ 689 (899)
++. +++. .. +||||||||||++++.+.+.+.... .+ + .+..+++|.|+..++|. +|.+.
T Consensus 270 lq~ilr~~~~~~~~l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l 349 (796)
T 2c4m_A 270 LQAMIQDHLAHHKDLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQI 349 (796)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHH
T ss_pred HHHHHHHHHHHCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCHHHHHHHCCHHH
T ss_conf 99999999870887344599708993897177689999999745417987899998602178885686377764179999
Q ss_pred HHH---------CCCCCCCCCC----CC------CCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHHHHC-CCCCCCCCC
Q ss_conf 642---------1995111378----65------335664221010565784433689970812687400-341010123
Q 002628 690 LAS---------CGLDVQQLNR----PD------RMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEGG-QGLHSTLNF 749 (899)
Q Consensus 690 L~~---------~GL~~~~l~~----pd------rLqd~~~~~~inllK~ai~~AD~VITVS~s~aqe~g-~GL~~lL~~ 749 (899)
+.. .+++...+.. |+ ++. -...+.+|+.+.++++|+.|++||+.|+++.. .-....+..
T Consensus 350 ~~~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~-i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~ 428 (796)
T 2c4m_A 350 FQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMA-PIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLADWYAL 428 (796)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHC-SEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHCCC-CEECCCCCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 9987579888870768999999984578276653254-124881169999998428321023877888613666669872
Q ss_pred CCCCEEEEECCCCCCCC----CCCCCHHHHHHCC-----------------CCC-------CCCHHHHHHHH----HHHC
Q ss_conf 78828998368558988----9985102332034-----------------222-------11113318999----9980
Q 002628 750 HSKKFVGILNGIDTDAW----NPATDTFLKVQYN-----------------AND-------LQGKAENKESI----RKHL 797 (899)
Q Consensus 750 ~~~KI~VIpNGID~e~f----~Pa~d~~L~~~y~-----------------add-------l~gK~~~K~aL----Rk~L 797 (899)
.+.|+..|.||||...| +|..++.+...|. ++| +++|..+|..| ++++
T Consensus 429 ~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~ 508 (796)
T 2c4m_A 429 WPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQ 508 (796)
T ss_dssp CGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86400656188466775003597588999986692122118699999886199889999999999999999999999985
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCHHH-HHHHHHHHHC---------CCCEEEEECCCCCCCCCH----------------
Q ss_conf 99988999849999815777669999-9999998110---------690999991899558328----------------
Q 002628 798 GLSSADARKPLVGCITRLVPQKGVHL-IRHAIYRTLE---------LGGQFILLGSSPVPHIQV---------------- 851 (899)
Q Consensus 798 GLs~~d~dkpLIgfVGRL~pqKGidl-LIeAi~~Lle---------~~vqLVIVG~G~~~~lqk---------------- 851 (899)
|+. .+++.+++++|.|++.+||.++ +++.+.++.+ .+++||++|.|.+.+...
T Consensus 509 Gl~-vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~ 587 (796)
T 2c4m_A 509 GIE-IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNN 587 (796)
T ss_dssp CCC-CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCC-CCCCCCEEEEEECCHHHCCCCEEHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 998-7999767777640425305688299999999998608877789949999962877679889999999999987424
Q ss_pred ---------------------HHHHHHCCEEEECCC--CCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ---------------------999976480688678--67671999998159961016998542
Q 002628 852 ---------------------YPILLSSFSFLRKHI--FNICNLYIKLGQGGDLTVNNNCEPWL 892 (899)
Q Consensus 852 ---------------------e~IlAaADIfVvPS~--~EpFGLV~LEAMa~gl~Vi~~v~~~l 892 (899)
+.++++||++++||. +||||+.+|.||--|...+.+--||.
T Consensus 588 dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGan 651 (796)
T 2c4m_A 588 DPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGAN 651 (796)
T ss_dssp CTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHH
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHHHHCCCEEEECCCCEE
T ss_conf 6014996079997999989999986412240258999878876077899976974770457768
Done!