Query 002629
Match_columns 898
No_of_seqs 351 out of 819
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 16:26:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002629.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1347-1350//hhsearch_pdb/002629hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 213.6 14.1 115 119-233 5-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 139.7 12.1 98 124-231 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 109.9 10.8 96 124-230 7-102 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 41.5 8.2 93 124-217 17-123 (404)
5 4b8c_D Glucose-repressible alc 1.0 1 1 34.4 0.7 86 478-563 43-128 (727)
6 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 31.8 4.5 72 762-839 2-90 (102)
7 2ktr_A Sequestosome-1; autopha 1.0 1 1 31.6 4.3 73 762-840 17-106 (117)
8 1vd2_A Protein kinase C, IOTA 1.0 1 1 27.5 7.5 56 765-827 6-61 (89)
9 1wmh_B Partitioning defective- 1.0 1 1 27.1 6.5 69 765-840 6-76 (86)
10 1q1o_A Cell division control p 1.0 1 1 25.2 6.7 67 762-830 2-75 (98)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=213.62 Aligned_cols=115 Identities=29% Similarity=0.479 Sum_probs=106.0
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCH
Q ss_conf 99999841489960435699899403500105330999999999996299998568982898999928997215614601
Q 002629 119 APNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWS 198 (898)
Q Consensus 119 ~~~~~~~~~F~K~LT~SDV~~~GrlsVPk~~AE~~FP~Ld~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs 198 (898)
...+....+|+|+||+|||++++||+||+++|+.|||.++..+..++++|.++|.+|++|+|||+||+++++|+||+||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHH
T ss_conf 78999862499998557718977799678999966886544457883899999589999999999978999638837748
Q ss_pred HHHCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 13301577669889999715--981999999458999
Q 002629 199 VFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRATRPQ 233 (898)
Q Consensus 199 ~FVk~K~L~aGDsVvF~R~e--~g~L~VGIRRa~r~~ 233 (898)
.||++|+|++||.|+|++.+ ++.|+|++||+.++.
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 8778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=139.67 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=86.3
Q ss_pred CCEEEEEEECCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 84148996043569989940350010533099999999999629999856898289899992899721561460113301
Q 002629 124 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 203 (898)
Q Consensus 124 ~~~~F~K~LT~SDV~~~GrlsVPk~~AE~~FP~Ld~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVk~ 203 (898)
..++|.|+||+||+.+...|.||+.+++.+||..+ ..+.++|. |+.|+|+++|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHH
T ss_conf 99989999785661898679909999997488888-------37999979-9478989999589--07877763898887
Q ss_pred CCCCCCCEEEEEECCCC--CEEEEEEECCC
Q ss_conf 57766988999971598--19999994589
Q 002629 204 KRLVAGDSVLFIWNEKN--QLLLGIRRATR 231 (898)
Q Consensus 204 K~L~aGDsVvF~R~e~g--~L~VGIRRa~r 231 (898)
++|++||.|+|...++. .+.|.|.|++.
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 599989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=109.88 Aligned_cols=96 Identities=22% Similarity=0.385 Sum_probs=82.4
Q ss_pred CCEEEEEEECCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 84148996043569989940350010533099999999999629999856898289899992899721561460113301
Q 002629 124 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 203 (898)
Q Consensus 124 ~~~~F~K~LT~SDV~~~GrlsVPk~~AE~~FP~Ld~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FVk~ 203 (898)
..+.|.|+|+++|. ..++.||+++++.+.+.+ ...+.++|..|++|++++.+++ ++..|+.||..||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCC--CCEEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHH
T ss_conf 89878999877775--531888999998648669-------9889999799999999999989--949986294999997
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 577669889999715981999999458
Q 002629 204 KRLVAGDSVLFIWNEKNQLLLGIRRAT 230 (898)
Q Consensus 204 K~L~aGDsVvF~R~e~g~L~VGIRRa~ 230 (898)
++|++||.++|...++..+.|.|-|.+
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 599989899999858976999997898
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=41.54 Aligned_cols=93 Identities=23% Similarity=0.346 Sum_probs=67.7
Q ss_pred CCEEEEEEECCCCCCCCC----CEEEECCHHHHHCCCCCC-CCCCCCEEEEEE--ECCCCEEEEEEEEEC------CCCC
Q ss_conf 841489960435699899----403500105330999999-999996299998--568982898999928------9972
Q 002629 124 PTNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPPLDY-SQTPPAQELIAR--DLHDNEWKFRHIFRG------QPKR 190 (898)
Q Consensus 124 ~~~~F~K~LT~SDV~~~G----rlsVPk~~AE~~FP~Ld~-~~~~p~q~L~v~--Dl~G~~W~FR~iyrg------~pkr 190 (898)
....|+|.|++-|++..| ++-+|+..+...||.|+. ....+.+.+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 15614601-1330157766988999971
Q 002629 191 HLLTTGWS-VFVSAKRLVAGDSVLFIWN 217 (898)
Q Consensus 191 hlLTtGWs-~FVk~K~L~aGDsVvF~R~ 217 (898)
|.||. |. .+.-.....+||.++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=34.41 Aligned_cols=86 Identities=21% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 88986035667668788986434377689999999999984110359889899999854310144466668534555545
Q 002629 478 TASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHL 557 (898)
Q Consensus 478 ~~~~~~~q~~qq~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (898)
.+++-+.|..+.+.++|...|..++.+.+.+.+.+|||.+++++..+|+|+++++.+++++++....+........-.+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~qqq~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (727)
T 4b8c_D 43 NNPIWKLQLHLAAVSAQSLGQPNIYARQNAMKKYLATQQAQQAQQQAQQQAQQQVPGPFGPGPQAAPPALQPTDFQQSHI 122 (727)
T ss_dssp TSHHHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHC---------------------------------------------
T ss_pred CCCHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
T ss_conf 48227777788763312126604999999999887501306678887760667666765668666752000232126566
Q ss_pred CCCCCC
Q ss_conf 577889
Q 002629 558 ASSSQS 563 (898)
Q Consensus 558 ~~~~~~ 563 (898)
...+.+
T Consensus 123 ~~~s~s 128 (727)
T 4b8c_D 123 AEASKS 128 (727)
T ss_dssp ------
T ss_pred CCHHHH
T ss_conf 533342
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=31.79 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCCCCEEEEEECC-----CCEEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 9975617994036-----4114431699-----------89979999999998456787789999850999982789656
Q 002629 762 PPTRTFVKVHKSG-----SFGRSLDISK-----------FSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 825 (898)
Q Consensus 762 ~~~~~fVKV~m~G-----~igRkIDL~~-----------~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EgD~m 825 (898)
|..++-||+|..| .--|..-|.. -.+|++|+..+.++|..- .+..|++.|.|.|||+.
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEE
T ss_conf 974699999981677778726998833677754222446666999999999975445------79838999998999989
Q ss_pred ECCCC-CHHHHHCCE
Q ss_conf 43786-545442030
Q 002629 826 LLGDD-PWQEFVNNV 839 (898)
Q Consensus 826 LvGDv-PWe~Fv~sv 839 (898)
-..++ --++-+.++
T Consensus 76 tiSsDeEL~~Al~~~ 90 (102)
T 2kkc_A 76 AFSSDEELTMAMSYV 90 (102)
T ss_dssp EECSHHHHHHHHHHC
T ss_pred EECCHHHHHHHHHHC
T ss_conf 764889999999715
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=31.55 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCCCCEEEEEECC-----CCEEEECCC-----------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 9975617994036-----411443169-----------989979999999998456787789999850999982789656
Q 002629 762 PPTRTFVKVHKSG-----SFGRSLDIS-----------KFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 825 (898)
Q Consensus 762 ~~~~~fVKV~m~G-----~igRkIDL~-----------~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EgD~m 825 (898)
+..++-||++..| .--|+.-|. .-.+|++|+..+.++|.. + ....|++.|.|.|||+.
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~---L---~~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA---L---RPGGFQAHYRAERGDLV 90 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S---CSSCEEEEEECTTCCEE
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---C---CCCCEEEEEECCCCCEE
T ss_conf 44528999998067778872799884267774311245677799999999997345---5---89838999998999989
Q ss_pred ECCC-CCHHHHHCCEE
Q ss_conf 4378-65454420301
Q 002629 826 LLGD-DPWQEFVNNVG 840 (898)
Q Consensus 826 LvGD-vPWe~Fv~svk 840 (898)
-... +--++-+.+++
T Consensus 91 tISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 91 AFSSDEELTMAMSYVK 106 (117)
T ss_dssp EECSHHHHHHHHHHCC
T ss_pred EECCHHHHHHHHHHCC
T ss_conf 7638899999998337
No 8
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=27.51 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=42.2
Q ss_pred CCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEC
Q ss_conf 561799403641144316998997999999999845678778999985099998278965643
Q 002629 765 RTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLL 827 (898)
Q Consensus 765 ~~fVKV~m~G~igRkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EgD~mLv 827 (898)
..=||++-.|. .|.+.+..--+|++|...+..+|.+.. ...+++.|.|.|||+.-+
T Consensus 6 ~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~~------~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 6 QVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFDN------EQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp CEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCCS------SCCEEEEECCSSSCCEEC
T ss_pred EEEEEEEECCE-EEEEECCCCCCHHHHHHHHHHHHCCCC------CCEEEEEEECCCCCCCCC
T ss_conf 18999994785-999987999899999999999968898------982799999899795033
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=27.13 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=51.7
Q ss_pred CCEEEEEECCCCEE-EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEECC-CCCHHHHHCCEE
Q ss_conf 56179940364114-43169989979999999998456787789999850999982789656437-865454420301
Q 002629 765 RTFVKVHKSGSFGR-SLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLG-DDPWQEFVNNVG 840 (898)
Q Consensus 765 ~~fVKV~m~G~igR-kIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EgD~mLvG-DvPWe~Fv~svk 840 (898)
-.-||.+-++.+-| ++|-..-.+|++|..-++++|.+. ...+++.|.|.+||++-.- |+-..+-+.+++
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC-------CCCEEEEEECCCCCEEEECCHHHHHHHHHHCC
T ss_conf 799986338804676726887878899999999975789-------98789999889999761458899999997288
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=25.19 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCCEEEEEECC-C----CE--EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEECCCC
Q ss_conf 9975617994036-4----11--44316998997999999999845678778999985099998278965643786
Q 002629 762 PPTRTFVKVHKSG-S----FG--RSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDD 830 (898)
Q Consensus 762 ~~~~~fVKV~m~G-~----ig--RkIDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvYeD~EgD~mLvGDv 830 (898)
|..+.-|||+-.. . ++ |.|=+..--+|++|...+.+-|+.. ..+......++-|.|.|||+...+|+
T Consensus 2 ~~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~--~~~~i~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 2 PLGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp CSSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH--CSSCCCCCCCEEEECSSSCEEEECSH
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCEEEEEEECCCCCEEEECCH
T ss_conf 875189999935765666668679999669998999999999997678--65454650479999699998877288
Done!