BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002630
(898 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/891 (58%), Positives = 671/891 (75%), Gaps = 8/891 (0%)
Query: 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDV 64
NPF + + L G+ K+++L L+ R +LP+SI++LLE+A+RNCD+F VK +D+
Sbjct: 22 NPFAYLAEPLDPAQPGK--KFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDI 79
Query: 65 EKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPV 124
E I++W T +E+PFKPARV+LQDFTGVP+VVD A MRDA+ KLGGD KINP+ PV
Sbjct: 80 ENILNWNVTQHMNIEVPFKPARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPV 139
Query: 125 DLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 184
DLVIDHS+QVD R +++Q N + EF RN+ERF FLKWGS AF NM ++PPGSGI+HQV
Sbjct: 140 DLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQV 199
Query: 185 NLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLP 244
NLEYL RVVF+ +G YPDS+VGTDSHTTMID MLGQP+SMVLP
Sbjct: 200 NLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLP 259
Query: 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMS 304
V+G++L GK VT+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM
Sbjct: 260 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC 319
Query: 305 PEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERV--YSSYLE 362
PEYGAT FFPVD V+++YL TGR + V I YL+A MF DYS+ + ++ +E
Sbjct: 320 PEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVE 379
Query: 363 LNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 422
L+L+ VVPC SGPKRP D+V +++MK D+ +CL + GFKGF + ++ + F ++ +
Sbjct: 380 LDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDS 439
Query: 423 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 482
L HG VVIAAITS TNTSNPSVMLGA L+AKKA + GL VKP++KTSL+PGSGVVT
Sbjct: 440 EFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTY 499
Query: 483 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEG 542
YL+ SG+ YL+ LGF +VGYG TCIGNSG + + V AIT+ D+VA VLSGNRNFEG
Sbjct: 500 YLRESGVMPYLSQLGFDVVGYGSMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEG 559
Query: 543 RVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVV 602
RVHP TRANYLASPPLV+AYA+AG++ IDFE EP+G G+++FLRDIWP+ EE+ V
Sbjct: 560 RVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVE 619
Query: 603 QKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPH 662
++ V+P MF Y+ I N WN L+ PS LY W+PKSTYI PP+F+++T+ P
Sbjct: 620 RQYVIPGMFTEVYQKIETVNASWNALAAPSDKLYLWNPKSTYIKSPPFFENLTLDLQPPK 679
Query: 663 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 722
+ AY LLN GDS+TTDHISPAG+I ++SPAA+YL RG+ R+FNSYGSRRGND IMA
Sbjct: 680 SIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMA 739
Query: 723 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSS 782
RGTFANIRL+N+ LN + P+TIH+P+GE L VFDAA RY+ EGH ++LAG EYGSGSS
Sbjct: 740 RGTFANIRLLNRFLNKQ-APQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSS 798
Query: 783 RDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 842
RDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL + PGE+A++ GLTG ERYTI +
Sbjct: 799 RDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIII 858
Query: 843 PSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 893
P +++ P V+V D+GK+F VIRFDT+VEL YF +GGIL Y+IR +
Sbjct: 859 PENLT---PRMHVQVKLDTGKTFQAVIRFDTDVELTYFHNGGILNYMIRKM 906
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/891 (58%), Positives = 670/891 (75%), Gaps = 8/891 (0%)
Query: 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDV 64
NPF + + L G+ K+++L L D R +LP+SI++LLE+AIRNCDEF VK +D+
Sbjct: 2 NPFAHLAEPLDPVQPGK--KFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDI 59
Query: 65 EKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPV 124
E I+ W T K +E+PFKPARV+LQDFTGVPAVVD A MRDA+ KLGGD KINP+ P
Sbjct: 60 ENILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPA 119
Query: 125 DLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 184
DLVIDHS+QVD R +++Q N + EF RN+ERF FLKWGS AFHNM ++PPGSGI+HQV
Sbjct: 120 DLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQV 179
Query: 185 NLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLP 244
NLEYL RVVF+ +G YPDS+VGTDSHTTMID MLGQP+SMVLP
Sbjct: 180 NLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239
Query: 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMS 304
V+G++L GK VT+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM
Sbjct: 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC 299
Query: 305 PEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERV--YSSYLE 362
PEYGAT FFPVD V++ YL TGR ++ + I+ YL+A MF D+++ + ++ +E
Sbjct: 300 PEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVE 359
Query: 363 LNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 422
L+L+ VVPC SGPKRP D+V +++MK D+ +CL + GFKGF + E+ + F + T
Sbjct: 360 LDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNT 419
Query: 423 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 482
L HG VVIAAITSCTNTSNPSVMLGA L+AKKA + GL V P+IKTSL+PGSGVVT
Sbjct: 420 EFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTY 479
Query: 483 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEG 542
YLQ SG+ YL+ LGF +VGYGC TCIGNSG + + V AIT+ D+VA VLSGNRNFEG
Sbjct: 480 YLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEG 539
Query: 543 RVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVV 602
RVHP TRANYLASPPLV+AYA+AG++ IDFE EP+GV G+++FL+DIWP+ +E+ V
Sbjct: 540 RVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVE 599
Query: 603 QKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPH 662
++ V+P MFK Y+ I N WN L+ PS L+ W+ KSTYI PP+F+++T+ P
Sbjct: 600 RQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPK 659
Query: 663 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 722
+ AY LLN GDS+TTDHISPAG+I ++SPAA+YL RG+ R+FNSYGSRRGND +MA
Sbjct: 660 SIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMA 719
Query: 723 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSS 782
RGTFANIRL+N+ LN + P+TIH+P+GE L VFDAA RY+ G ++LAG EYG+GSS
Sbjct: 720 RGTFANIRLLNRFLNKQ-APQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSS 778
Query: 783 RDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 842
RDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL + PGE+A+ GLTG ERYTI +
Sbjct: 779 RDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIII 838
Query: 843 PSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 893
P + ++P V+V D+GK+F V+RFDT+VEL YF +GGIL Y+IR +
Sbjct: 839 PEN---LKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 886
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 230/826 (27%), Positives = 336/826 (40%), Gaps = 169/826 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDY--S 351
ATI NM E GAT FP +H +YL TGR+D E F D+
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 352 ESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 411
+S Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 412 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 471
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 472 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 529
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 530 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 587
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 588 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 647
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 648 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 707
F ++ L+ TTDHIS AG K
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 578
Query: 708 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 764
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 579 FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 625
Query: 765 EGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 824
G V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 626 HGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--A 683
Query: 825 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 870
+ A+ + + ++ TI + + P GK TC+I+
Sbjct: 684 DPADYNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 229/843 (27%), Positives = 348/843 (41%), Gaps = 158/843 (18%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 91
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 92 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 137
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 138 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 188
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 189 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 248
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSES 353
ATI NM E GAT FP +H +YL TGR+D ++ + + + + D
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEF--KDHLVPDPGCH 305
Query: 354 ERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 ---YDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE---- 343
Query: 414 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSL 473
G P +R + I SCTN+S + AA VAK+A GL+ K + ++
Sbjct: 344 -------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 388
Query: 474 APGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAA 531
PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 389 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI-------- 440
Query: 532 AVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLR 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 441 -VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLE 497
Query: 590 DIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPP 649
P ++E+ D + TY+ K + SG A P S +
Sbjct: 498 A--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVAVSPTSQRLQLLE 541
Query: 650 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFN 709
F ++ L+ TTDHIS AG K F
Sbjct: 542 PFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FR 579
Query: 710 SYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEG 766
+ N+ ++ N R N + N E GP V D A YK G
Sbjct: 580 GHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHG 626
Query: 767 HDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 826
V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F +
Sbjct: 627 IRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADP 684
Query: 827 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHG 883
A+ + + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 685 ADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAG 741
Query: 884 GIL 886
L
Sbjct: 742 SAL 744
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 230/826 (27%), Positives = 336/826 (40%), Gaps = 169/826 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDY--S 351
ATI NM E GAT FP +H +YL TGR+D E F D+
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 352 ESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 411
+S Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 412 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 471
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 472 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 529
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 530 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 587
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 588 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 647
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 648 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 707
F ++ L+ TTDHIS AG K
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 578
Query: 708 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 764
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 579 FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 625
Query: 765 EGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 824
G V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 626 HGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--A 683
Query: 825 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 870
+ A+ + + ++ TI + + P GK TC+I+
Sbjct: 684 DPADYNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 196 bits (499), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 230/826 (27%), Positives = 335/826 (40%), Gaps = 169/826 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDY--S 351
ATI NM E GAT FP +H +YL TGR+D E F D+
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 352 ESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 411
+S Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 412 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 471
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 472 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 529
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 530 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 587
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 588 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 647
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 648 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 707
F ++ L+ TTDHIS AG K
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 578
Query: 708 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 764
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 579 FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 625
Query: 765 EGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 824
G V++ YG GSSR+ A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 626 HGIRWVVIGDENYGEGSSREHRALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--A 683
Query: 825 EDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIR 870
+ A+ + + ++ TI + + P GK TC+I+
Sbjct: 684 DPADYNKIHPVDKLTI---QGLKDFAP----------GKPLTCIIK 716
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 229/843 (27%), Positives = 347/843 (41%), Gaps = 158/843 (18%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSES 353
ATI NM E GAT FP +H +YL TGR+D ++ + + + + D
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEF--KDHLVPDPGCH 306
Query: 354 ERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 307 ---YDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE---- 344
Query: 414 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSL 473
G P +R + I SCTN+S + AA VAK+A GL+ K + ++
Sbjct: 345 -------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 389
Query: 474 APGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAA 531
PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 390 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI-------- 441
Query: 532 AVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLR 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 442 -VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLE 498
Query: 590 DIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPP 649
P ++E+ D + TY+ K + SG P S +
Sbjct: 499 A--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLE 542
Query: 650 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFN 709
F ++ L+ TTDHIS AG K F
Sbjct: 543 PFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FR 580
Query: 710 SYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEG 766
+ N+ ++ N R N + N E GP V D A YK G
Sbjct: 581 GHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHG 627
Query: 767 HDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 826
V++ YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F +
Sbjct: 628 IRWVVIGDENYGEGSSREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADP 685
Query: 827 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHG 883
A+ + + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 686 ADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAG 742
Query: 884 GIL 886
L
Sbjct: 743 SAL 745
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 228/843 (27%), Positives = 347/843 (41%), Gaps = 158/843 (18%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSES 353
ATI NM E GAT FP +H +YL TGR+D ++ + + + + D
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEF--KDHLVPDPGCH 306
Query: 354 ERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 307 ---YDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE---- 344
Query: 414 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSL 473
G P +R + I SCTN+S + AA VAK+A GL+ K + ++
Sbjct: 345 -------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 389
Query: 474 APGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAA 531
PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 390 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI-------- 441
Query: 532 AVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLR 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 442 -VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLE 498
Query: 590 DIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPP 649
P ++E+ D + TY+ K + SG P S +
Sbjct: 499 A--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLE 542
Query: 650 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFN 709
F ++ L+ TTDHIS AG K F
Sbjct: 543 PFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FR 580
Query: 710 SYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEG 766
+ N+ ++ N R N + N E GP V D A YK G
Sbjct: 581 GHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHG 627
Query: 767 HDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 826
V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F +
Sbjct: 628 IRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADP 685
Query: 827 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHG 883
A+ + + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 686 ADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAG 742
Query: 884 GIL 886
L
Sbjct: 743 SAL 745
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 228/843 (27%), Positives = 347/843 (41%), Gaps = 158/843 (18%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 91
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 92 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 137
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 138 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 188
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 189 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 248
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSES 353
ATI NM E GAT FP +H +YL TGR+D ++ + + + + D
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEF--KDHLVPDPGCH 305
Query: 354 ERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 ---YDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE---- 343
Query: 414 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSL 473
G P +R + I SCTN+S + AA VAK+A GL+ K + ++
Sbjct: 344 -------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 388
Query: 474 APGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAA 531
PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 389 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI-------- 440
Query: 532 AVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLR 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 441 -VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLE 497
Query: 590 DIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPP 649
P ++E+ D + TY+ K + SG P S +
Sbjct: 498 A--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLE 541
Query: 650 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFN 709
F ++ L+ TTDHIS AG K F
Sbjct: 542 PFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FR 579
Query: 710 SYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEG 766
+ N+ ++ N R N + N E GP V D A YK G
Sbjct: 580 GHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHG 626
Query: 767 HDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 826
V++ YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F +
Sbjct: 627 IRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADP 684
Query: 827 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHG 883
A+ + + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 685 ADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAG 741
Query: 884 GIL 886
L
Sbjct: 742 SAL 744
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 228/843 (27%), Positives = 347/843 (41%), Gaps = 158/843 (18%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 91
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 92 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 137
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 138 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 188
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 189 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 248
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSES 353
ATI NM E GAT FP +H +YL TGR+D ++ + + + + D
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEF--KDHLVPDPGCH 305
Query: 354 ERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSK 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 306 ---YDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE---- 343
Query: 414 VAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSL 473
G P +R + I SCTN+S + AA VAK+A GL+ K + ++
Sbjct: 344 -------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTI 388
Query: 474 APGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIVAA 531
PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 389 TPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI-------- 440
Query: 532 AVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLR 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK L
Sbjct: 441 -VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLE 497
Query: 590 DIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPP 649
P ++E+ D + TY+ K + SG P S +
Sbjct: 498 A--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQLLE 541
Query: 650 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFN 709
F ++ L+ TTDHIS AG K F
Sbjct: 542 PFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FR 579
Query: 710 SYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKNEG 766
+ N+ ++ N R N + N E GP V D A YK G
Sbjct: 580 GHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHG 626
Query: 767 HDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 826
V++ YG GSS++ +A P LG +A+I KSF RIH +NL G++PL F +
Sbjct: 627 IRWVVIGDENYGEGSSQEHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF--ADP 684
Query: 827 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTD--SGKSFTCVIRFD-TEVELAYFDHG 883
A+ + + ++ TI + + PG+ ++ + +G T ++ E ++ +F G
Sbjct: 685 ADYNKIHPVDKLTI---QGLKDFAPGKPLKCIIKHPNGTQETILLNHTFNETQIEWFRAG 741
Query: 884 GIL 886
L
Sbjct: 742 SAL 744
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 770 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 829
VI+AG +G GSSR+ A G+KAVIAKSF RI N + +G+IP+ A T
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPII------ANT 107
Query: 830 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 889
+ + IDL EI V+T+ K+ C E E+ GG++ Y+
Sbjct: 108 DEIKDGDIVEIDLDK--EEI-------VITNKNKTIKCETPKGLEREI--LAAGGLVNYL 156
Query: 890 -IRNLINVRQ 898
R LI ++
Sbjct: 157 KKRKLIQSKK 166
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 770 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 829
V++AG +G GSSR+ AA LG+ VIA+SF RI N + +G IPL +T
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLL-----GKT 107
Query: 830 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYV 889
GL + T++ + E+R G ++ + ++R GGIL+Y+
Sbjct: 108 EGLKDGDLVTVNWET--GEVRKGDEILMFEPLEDFLLEIVR-----------EGGILEYI 154
Query: 890 IR 891
R
Sbjct: 155 RR 156
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 769 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 825
++++ G +G+GSSR+ AA G K ++A SF IH +N + GI+P+ +P E
Sbjct: 87 SILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPII-QPKE 142
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 763 KNEGHDTVILAGAE-YGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPL 819
K E ++ IL E +GSGSSR+ A + G++A+IA SF I ++N +G G++ +
Sbjct: 67 KKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTI 124
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 770 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 816
+I+ G +G GSSR+ A G G+ VIA+SF RI N + +G+
Sbjct: 56 IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGL 102
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 36.2 bits (82), Expect = 0.075, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 769 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 817
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 769 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 817
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 769 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 817
+V++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 137 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 183
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 184 ALDVEQI 190
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 130 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 176
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 177 ALDVEQI 183
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 152 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 198
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 199 ALDVEQI 205
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 130 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 176
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 177 ALDVEQI 183
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 81/399 (20%), Positives = 139/399 (34%), Gaps = 105/399 (26%)
Query: 176 PGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXM 234
PG G++H +L R ML PD+V G DSHT
Sbjct: 474 PGDGVIHS----WLNR-------MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 235 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLV------------LTVTQMLRKHGVVGMFV 282
+ M + +P V + GK++ G+T DLV LTV + +K+ G +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 283 EFYGEGMSELSLADRATIANMSPEYGAT-----------MGFFPVDHVTLQYLKLTGRSD 331
E EG+ +L + + + S E A + + + V L+++ G D
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 332 -----DTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVV-PCVSGPKRPHDRVPLN 385
+ +E +L ++ ++++ Y++ ++++L ++ P + P P D PL+
Sbjct: 638 RRTLERRIQGMEKWLANPELLE--ADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLS 695
Query: 386 EMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNP 445
++ + K+ E I SC
Sbjct: 696 AVQGE----------------------KIDEV-----------------FIGSCMTNIGH 716
Query: 446 SVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 505
G L A K L + W+ AP + + L G G I GC
Sbjct: 717 FRAAGKLLDAHKG---QLPTRLWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIPGC 769
Query: 506 TTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV 544
+ C+GN + D A V + RNF R+
Sbjct: 770 SLCMGNQARVADG-----------ATVVSTSTRNFPNRL 797
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 133 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 179
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 180 ALDVEQI 186
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 152 MLSRHSFNALLKTLEEPP--EHVKF--LLATADPQ--KLPVTI-------LSRCLQFHLK 198
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 199 ALDVEQI 205
>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
Length = 242
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 493 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR 543
L HLG+ G T C G+ +DD + E A+V+ N+ F GR
Sbjct: 139 LGHLGY---GVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGR 186
>pdb|1ILD|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 4.6
pdb|1ILZ|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 6.1
pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 8.3
Length = 275
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 28/209 (13%)
Query: 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVY 357
+ IANM E+ +P D YL T SD I SY D++E+ R
Sbjct: 23 SIIANMLQEHDNPFTLYPYD---TNYLIYTQTSDLNKEAIASY--------DWAENARKD 71
Query: 358 SSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG--FKGFAI-PKEYQSKV 414
+L+L P G P+ + + + W ++ F+ P+ +
Sbjct: 72 EVKFQLSL--AFPLWRGILGPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFA 129
Query: 415 AEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKT 471
++ F G + DV + S+P+ A L + E G +EVKPW
Sbjct: 130 TDYRFAGWTLR----DVEMGYNHDSNGRSDPTSRSWARLYTRLMAENGNWLVEVKPWYVV 185
Query: 472 SLAPGSGVVTKYLQNSGLQKYLNHLGFHI 500
+ +TKY+ L+ +G+H+
Sbjct: 186 GNTDDNPDITKYMGYYQLK-----IGYHL 209
>pdb|4I1D|A Chain A, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|B Chain B, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|C Chain C, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|D Chain D, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
Length = 324
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 593 PSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSG 633
PS++++ + + +PD + A + G P+W+ + P+G
Sbjct: 25 PSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,940,393
Number of Sequences: 62578
Number of extensions: 1228323
Number of successful extensions: 2686
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2600
Number of HSP's gapped (non-prelim): 55
length of query: 898
length of database: 14,973,337
effective HSP length: 108
effective length of query: 790
effective length of database: 8,214,913
effective search space: 6489781270
effective search space used: 6489781270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)