Query 002630
Match_columns 898
No_of_seqs 381 out of 2908
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 6E-279 1E-283 2263.4 50.9 885 4-894 6-892 (892)
2 PLN00070 aconitate hydratase 100.0 4E-269 8E-274 2344.5 77.5 892 4-896 42-936 (936)
3 PTZ00092 aconitate hydratase-l 100.0 2E-266 4E-271 2319.0 76.8 884 5-895 14-897 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 2E-264 5E-269 2297.3 74.4 864 22-894 2-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 7E-263 1E-267 2291.6 76.0 872 5-895 4-889 (889)
6 PRK09277 aconitate hydratase; 100.0 2E-262 4E-267 2283.6 78.5 877 1-895 1-887 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 1E-257 2E-262 2233.2 72.8 834 22-895 12-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 5E-256 1E-260 2191.5 66.5 851 11-895 6-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 2E-178 4E-183 1566.0 59.1 697 60-889 19-745 (745)
10 PRK07229 aconitate hydratase; 100.0 3E-164 6E-169 1438.9 53.8 638 60-894 2-645 (646)
11 TIGR01342 acon_putative aconit 100.0 3E-162 7E-167 1419.0 52.5 642 62-894 1-653 (658)
12 TIGR00139 h_aconitase homoacon 100.0 2E-144 3E-149 1267.1 52.0 657 61-893 2-712 (712)
13 PRK11413 putative hydratase; P 100.0 7E-143 2E-147 1258.5 49.5 682 60-891 34-750 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 9E-137 2E-141 1144.6 46.3 704 60-891 58-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 6E-130 1E-134 1080.0 36.5 400 86-568 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 7E-121 1E-125 1033.8 40.7 452 60-569 2-460 (465)
17 PRK12466 isopropylmalate isome 100.0 1E-120 3E-125 1032.9 41.0 452 60-569 3-462 (471)
18 PRK05478 isopropylmalate isome 100.0 1E-119 2E-124 1025.4 40.6 452 60-569 2-460 (466)
19 PF00330 Aconitase: Aconitase 100.0 9E-121 2E-125 1037.3 31.3 457 62-566 1-465 (465)
20 cd01584 AcnA_Mitochondrial Aco 100.0 3E-118 7E-123 996.8 37.0 409 86-568 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 8E-115 2E-119 963.8 37.3 380 86-568 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 3E-114 6E-119 965.3 39.9 405 62-569 1-409 (412)
23 PRK00402 3-isopropylmalate deh 100.0 9E-114 2E-118 962.5 40.3 407 60-569 2-412 (418)
24 TIGR02086 IPMI_arch 3-isopropy 100.0 1E-113 2E-118 960.8 39.2 405 61-569 1-408 (412)
25 cd01585 AcnA_Bact Aconitase ca 100.0 2E-113 3E-118 951.0 36.3 379 85-568 1-380 (380)
26 TIGR02083 LEU2 3-isopropylmala 100.0 6E-113 1E-117 953.6 40.3 409 61-569 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 5E-111 1E-115 912.3 36.9 409 61-569 3-417 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 6E-105 1E-109 893.0 38.3 403 63-568 1-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 5E-104 1E-108 868.5 35.0 361 86-568 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 2.6E-99 6E-104 846.3 36.2 388 86-568 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 2.1E-97 5E-102 873.5 40.5 409 59-569 369-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 2.6E-96 6E-101 861.6 42.2 407 59-568 370-809 (844)
33 PLN00094 aconitate hydratase 2 100.0 6E-94 1.3E-98 838.9 39.2 409 59-569 442-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 2.4E-68 5.3E-73 524.2 12.4 170 672-841 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 7.2E-49 1.6E-53 438.8 24.6 417 60-603 372-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 5.2E-43 1.1E-47 381.6 15.9 398 342-844 16-421 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 7.7E-40 1.7E-44 318.7 8.7 141 672-841 1-141 (149)
38 PRK00439 leuD 3-isopropylmalat 100.0 1.1E-35 2.4E-40 297.7 11.3 156 670-893 4-159 (163)
39 PRK14023 homoaconitate hydrata 100.0 1.7E-35 3.7E-40 296.5 11.2 157 670-895 4-160 (166)
40 TIGR02087 LEUD_arch 3-isopropy 100.0 1.7E-35 3.8E-40 293.2 9.4 152 670-892 3-154 (154)
41 TIGR02084 leud 3-isopropylmala 100.0 2.3E-35 5E-40 292.7 9.9 154 670-891 3-156 (156)
42 COG0066 LeuD 3-isopropylmalate 100.0 5.4E-35 1.2E-39 293.4 9.5 165 670-894 11-180 (191)
43 PLN00072 3-isopropylmalate iso 100.0 9E-34 2E-38 296.7 11.3 172 663-892 68-240 (246)
44 PF00694 Aconitase_C: Aconitas 100.0 6E-35 1.3E-39 281.5 1.0 128 696-823 3-130 (131)
45 cd01579 AcnA_Bact_Swivel Bacte 100.0 3.5E-32 7.7E-37 259.7 5.3 121 672-842 1-121 (121)
46 TIGR00171 leuD 3-isopropylmala 100.0 3.9E-31 8.5E-36 269.4 8.6 163 668-883 10-174 (188)
47 PRK01641 leuD isopropylmalate 100.0 1E-30 2.3E-35 268.8 8.6 160 668-883 10-172 (200)
48 cd01577 IPMI_Swivel Aconatase- 100.0 4.2E-29 9.2E-34 226.7 4.9 73 769-842 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 99.9 8.2E-29 1.8E-33 223.4 5.8 71 769-841 17-87 (88)
50 PRK09238 bifunctional aconitat 99.9 3E-26 6.4E-31 272.1 12.8 165 663-894 165-342 (835)
51 cd01674 Homoaconitase_Swivel H 99.9 8.1E-27 1.7E-31 222.0 3.8 99 674-823 3-101 (129)
52 KOG0454 3-isopropylmalate dehy 99.9 2.2E-25 4.8E-30 244.2 5.0 421 59-567 65-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 8.4E-24 1.8E-28 203.7 6.2 67 769-841 52-130 (131)
54 TIGR00117 acnB aconitate hydra 99.9 6.8E-23 1.5E-27 243.0 10.6 164 663-894 166-343 (844)
55 PRK14812 hypothetical protein; 99.8 8.3E-19 1.8E-23 167.0 7.5 91 779-883 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.7 4E-18 8.6E-23 202.5 12.7 117 759-894 285-415 (938)
57 PF06434 Aconitase_2_N: Aconit 98.2 1.8E-06 3.9E-11 88.3 5.9 118 758-894 45-175 (204)
58 PF04412 DUF521: Protein of un 95.7 0.031 6.8E-07 64.5 8.3 68 430-505 289-356 (400)
59 COG1049 AcnB Aconitase B [Ener 95.4 0.026 5.6E-07 66.6 6.2 117 759-892 214-342 (852)
60 COG1679 Predicted aconitase [G 93.2 0.22 4.8E-06 56.5 7.4 68 430-505 289-356 (403)
61 cd01355 AcnX Putative Aconitas 90.5 0.63 1.4E-05 53.7 7.2 69 431-510 279-347 (389)
62 TIGR00829 FRU PTS system, fruc 28.9 46 0.00099 30.5 2.5 31 435-466 2-32 (85)
63 PRK03600 nrdI ribonucleotide r 25.5 63 0.0014 32.1 3.0 28 513-540 56-86 (134)
64 PF07972 Flavodoxin_NdrI: NrdI 25.0 61 0.0013 31.9 2.8 42 498-540 41-85 (122)
65 COG1223 Predicted ATPase (AAA+ 22.7 42 0.00091 37.5 1.3 40 138-182 125-166 (368)
66 COG1445 FrwB Phosphotransferas 21.2 97 0.0021 30.6 3.3 33 433-466 4-36 (122)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-279 Score=2263.45 Aligned_cols=885 Identities=73% Similarity=1.204 Sum_probs=867.1
Q ss_pred CCcccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCceeEeee
Q 002630 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (898)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~ 83 (898)
.+||....++|...+. .++||+|++|. .++++||||||||||+++||||++.+.++++|+||.|.....+..||+|+
T Consensus 6 ~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpFk 82 (892)
T KOG0452|consen 6 ENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPFK 82 (892)
T ss_pred cccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeeccc
Confidence 4789877788887654 79999999998 68999999999999999999999999999999999999877778899999
Q ss_pred cceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhh
Q 002630 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (898)
Q Consensus 84 pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~ 163 (898)
|+||++|||||+||++|||+|||+++++|+||+||||.+|+|||||||||+|+.++++|+++|+..||+||+|||.||||
T Consensus 83 PARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKW 162 (892)
T KOG0452|consen 83 PARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKW 162 (892)
T ss_pred cceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeCCCCcceeeeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeec
Q 002630 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (898)
Q Consensus 164 ~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~v 243 (898)
+.++|+|+.++|||+||+||||||||||||+.+++++|||++|||||||||++|||++||||||+|+|++|+|||++|.+
T Consensus 163 gs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvl 242 (892)
T KOG0452|consen 163 GSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVL 242 (892)
T ss_pred hhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheec
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHH
Q 002630 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (898)
Q Consensus 244 PevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~Y 323 (898)
|+|||.+|+|+|.++||++||+|+||++||+.|++||||||||+|++.||+.||+||+||+||||||.||||+|+.|++|
T Consensus 243 P~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~y 322 (892)
T KOG0452|consen 243 PEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQY 322 (892)
T ss_pred ccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCChhhHHHHHHHHHhcccccccCC--CCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccC
Q 002630 324 LKLTGRSDDTVSMIESYLRANKMFVDYSE--SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 401 (898)
Q Consensus 324 L~~~gr~~~~~~~~~~y~~~~~l~~~~~d--~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~ 401 (898)
|+.|||+++.++.+++|+|+.++|++..| .++.|++++++||++|+|+|+||+||+|+++|++|+++|..||++++|+
T Consensus 323 l~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgF 402 (892)
T KOG0452|consen 323 LKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGF 402 (892)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccc
Confidence 99999999999999999999999998655 4589999999999999999999999999999999999999999999999
Q ss_pred CCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHH
Q 002630 402 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 481 (898)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~ 481 (898)
|||.++++.+++...+.|+|++++|.||+|+||+|+||||+|||++|++|+||||||+++|++|+||+||+++|||.+|+
T Consensus 403 KgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt 482 (892)
T KOG0452|consen 403 KGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVT 482 (892)
T ss_pred cccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhh
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHH
Q 002630 482 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 561 (898)
Q Consensus 482 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA 561 (898)
.||.++|++++|+++||.|+||||+|||||+|+|.+++.++|++|++++++|+|||||||||+||.+++||||||++|+|
T Consensus 483 ~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvva 562 (892)
T KOG0452|consen 483 KYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVA 562 (892)
T ss_pred hhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCC
Q 002630 562 YALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 641 (898)
Q Consensus 562 ~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~ 641 (898)
|||||+++||+++||||+++||+.|||+||||+++||+++++++|.|+||++.|+.|..+++.|+.|++|++.+|+||++
T Consensus 563 YaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~ 642 (892)
T KOG0452|consen 563 YAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPK 642 (892)
T ss_pred hhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhc
Q 002630 642 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIM 721 (898)
Q Consensus 642 styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm 721 (898)
||||++||||++|+.+++.+++|++|++|+.+||+||||||||||+|.++|||+|||.+||++|+|||||||||||+|||
T Consensus 643 STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vM 722 (892)
T KOG0452|consen 643 STYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVM 722 (892)
T ss_pred CceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEec
Q 002630 722 ARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 801 (898)
Q Consensus 722 ~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~ 801 (898)
.||||+|||+.|+++. +.||.|+|+|+||.+.|||||++|+++|.|+||+||++||||||||||||+|.+|||||||||
T Consensus 723 aRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViae 801 (892)
T KOG0452|consen 723 ARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAE 801 (892)
T ss_pred hcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHH
Confidence 9999999999999985 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHH
Q 002630 802 SFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFD 881 (898)
Q Consensus 802 SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~ 881 (898)
|||||||+||++|||+||+|..++++++|+|+|.|.++|.+++. .|+||+.++|+..+|+.|.+++||||+.|+.||+
T Consensus 802 S~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~ 879 (892)
T KOG0452|consen 802 SYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYK 879 (892)
T ss_pred HHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEe
Confidence 99999999999999999999999999999999999999999984 3899999999988999999999999999999999
Q ss_pred hcCHHHHHHHHHh
Q 002630 882 HGGILQYVIRNLI 894 (898)
Q Consensus 882 aGGiL~yv~~~~~ 894 (898)
+||||||+.|++.
T Consensus 880 ~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 880 NGGILNYMIRKLS 892 (892)
T ss_pred cCCcHHHHHhhcC
Confidence 9999999999873
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=3.7e-269 Score=2344.52 Aligned_cols=892 Identities=90% Similarity=1.422 Sum_probs=851.5
Q ss_pred CCcccccccceecC-CCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCceeEee
Q 002630 4 ENPFKSILKTLQRP-DGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPF 82 (898)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~ 82 (898)
.|+|....++|+++ ++ +.|+||+|.++...+++||||||||||||+||||||..++++++++|++|......+.||+|
T Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f 120 (936)
T PLN00070 42 ENPFKGILTSLPKPGGG-EFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEIPF 120 (936)
T ss_pred cCchhhhhheeeecCCC-ceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCceecc
Confidence 36776433678877 43 23999999998656799999999999999999999999999999999999876656679999
Q ss_pred ecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhh
Q 002630 83 KPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLK 162 (898)
Q Consensus 83 ~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk 162 (898)
+|+||+||||||+|+++|||||||+++++|+||++|||.+||+||||||||+|++++++|+.+|+.+||+||.|||.|||
T Consensus 121 ~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flk 200 (936)
T PLN00070 121 KPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLK 200 (936)
T ss_pred CCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeCCCCcceeeeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEee
Q 002630 163 WGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 242 (898)
Q Consensus 163 ~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~ 242 (898)
|++++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||+
T Consensus 201 w~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~ 280 (936)
T PLN00070 201 WGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 280 (936)
T ss_pred hhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEee
Confidence 99999999999999999999999999999999768999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHH
Q 002630 243 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 322 (898)
Q Consensus 243 vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~ 322 (898)
+||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++
T Consensus 281 vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~ 360 (936)
T PLN00070 281 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 360 (936)
T ss_pred CCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCChhhHHHHHHHHHhcccccc--cCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhccccc
Q 002630 323 YLKLTGRSDDTVSMIESYLRANKMFVD--YSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 400 (898)
Q Consensus 323 YL~~~gr~~~~~~~~~~y~~~~~l~~~--~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~ 400 (898)
||+.|||++++++++++|+|+++||++ .+|++|+|+++++||||+|+|+||||++|||++||++++++|.+++..+.+
T Consensus 361 YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 440 (936)
T PLN00070 361 YLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 440 (936)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccccc
Confidence 999999999999999999999999986 567899999999999999999999999999999999999999888776544
Q ss_pred CCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHH
Q 002630 401 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 480 (898)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V 480 (898)
.+++..+.++.....+++++|++..+++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V 520 (936)
T PLN00070 441 FKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVV 520 (936)
T ss_pred ccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHH
Confidence 44443322222233456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHH
Q 002630 481 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 560 (898)
Q Consensus 481 ~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~Va 560 (898)
++||+++||+++|+++||+|++||||+|||||++++++++++|.+|+++++||||+||||+|||||.+++||||||++||
T Consensus 521 ~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVa 600 (936)
T PLN00070 521 TKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 600 (936)
T ss_pred HHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCC
Q 002630 561 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 640 (898)
Q Consensus 561 A~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~ 640 (898)
||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.++|++|.+.|.+++.+++.|++|++|.+.+|+||+
T Consensus 601 A~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~ 680 (936)
T PLN00070 601 AYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDP 680 (936)
T ss_pred HHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhh
Q 002630 641 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 720 (898)
Q Consensus 641 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~ev 720 (898)
+||||++||||++++..++++.+|+++|||+++|||||||||||||+|+++||||+||+++|+.++||||||||||||||
T Consensus 681 ~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ev 760 (936)
T PLN00070 681 KSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEI 760 (936)
T ss_pred CcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchh
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEe
Q 002630 721 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 800 (898)
Q Consensus 721 m~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA 800 (898)
|+||||+|+|++|+|++|++||+|+|+|+||.++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||
T Consensus 761 m~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA 840 (936)
T PLN00070 761 MARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 840 (936)
T ss_pred hhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHH
Q 002630 801 KSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYF 880 (898)
Q Consensus 801 ~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~ 880 (898)
+||+||||+||+|||||||+|.++++++++++.+++.++|+++..+.+++||+.++++..+|++|++++++||+.|++||
T Consensus 841 ~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~ 920 (936)
T PLN00070 841 KSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYF 920 (936)
T ss_pred ccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHH
Confidence 99999999999999999999999999999999989999999876566789999888877788999999999999999999
Q ss_pred HhcCHHHHHHHHHhhh
Q 002630 881 DHGGILQYVIRNLINV 896 (898)
Q Consensus 881 ~aGGiL~yv~~~~~~~ 896 (898)
++|||||||+|+++++
T Consensus 921 ~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 921 DHGGILPYVIRNLIKQ 936 (936)
T ss_pred HcCCHHHHHHHHHhhC
Confidence 9999999999998753
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=2e-266 Score=2318.96 Aligned_cols=884 Identities=71% Similarity=1.169 Sum_probs=843.3
Q ss_pred CcccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCceeEeeec
Q 002630 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKP 84 (898)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~p 84 (898)
++|....++|+ ++ +.|+||+|+++...+++||||||||||||+||||||..++++++++|++|......+.||+|+|
T Consensus 14 ~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~~~p 90 (898)
T PTZ00092 14 NPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEENSKKQIEIPFKP 90 (898)
T ss_pred CchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcccCCCCceeeecc
Confidence 57754336677 54 4899999999865679999999999999999999999999999999999987666678999999
Q ss_pred ceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhc
Q 002630 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (898)
Q Consensus 85 drvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~ 164 (898)
|||+||||||+|+++|||||||+++++|+||.+|||.+||+|+|||+||+++++..+++.+|+.+||+||.|||+||||+
T Consensus 91 ~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~ 170 (898)
T PTZ00092 91 ARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWG 170 (898)
T ss_pred ceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeCCCCcceeeeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecC
Q 002630 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (898)
Q Consensus 165 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vP 244 (898)
+++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++|
T Consensus 171 ~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vP 250 (898)
T PTZ00092 171 SKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLP 250 (898)
T ss_pred hhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCC
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHHH
Q 002630 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (898)
Q Consensus 245 evvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL 324 (898)
|||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||
T Consensus 251 evvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL 330 (898)
T PTZ00092 251 EVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYL 330 (898)
T ss_pred CEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCc
Q 002630 325 KLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 404 (898)
Q Consensus 325 ~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~ 404 (898)
+.|||++++++++++|.++|++|++ +|++|.|+++++||||+|+|+||||++|||++||++++++|.+++....+.+++
T Consensus 331 ~~tgR~~~~~~lve~y~ka~~l~~~-~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~ 409 (898)
T PTZ00092 331 KQTGRSEEKVELIEKYLKANGLFRT-YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGF 409 (898)
T ss_pred HhcccchHHHHHHHHHHHHHHHhhc-CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhcc
Confidence 9999999889999999999999963 688999999999999999999999999999999999999988776554344444
Q ss_pred cCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHH
Q 002630 405 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYL 484 (898)
Q Consensus 405 ~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l 484 (898)
.+++++....+++.++|.++.|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||
T Consensus 410 ~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l 489 (898)
T PTZ00092 410 GIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYL 489 (898)
T ss_pred CCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHH
Confidence 44333222223444678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHH
Q 002630 485 QNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYAL 564 (898)
Q Consensus 485 ~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~Al 564 (898)
+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|||+||||+|||||..++||||||+|||||||
T Consensus 490 ~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~Al 569 (898)
T PTZ00092 490 EASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYAL 569 (898)
T ss_pred HHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCcc
Q 002630 565 AGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTY 644 (898)
Q Consensus 565 aG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~sty 644 (898)
+|+|+||+++||||+++||++|||+||||+.+||++++..+++|++|.+.|.+++.+++.|++|+++.+++|+||++|||
T Consensus 570 aG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~Sty 649 (898)
T PTZ00092 570 AGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTY 649 (898)
T ss_pred cCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccc
Q 002630 645 IHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARG 724 (898)
Q Consensus 645 i~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg 724 (898)
|++||||++++.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||+||
T Consensus 650 I~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~Rg 729 (898)
T PTZ00092 650 IHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRG 729 (898)
T ss_pred ccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcce
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchh
Q 002630 725 TFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFE 804 (898)
Q Consensus 725 ~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFa 804 (898)
||+|+|++|+|+ |.+|++|+|+|+|+.|+|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+||+
T Consensus 730 tF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~SF~ 808 (898)
T PTZ00092 730 TFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFE 808 (898)
T ss_pred eccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHH
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcC
Q 002630 805 RIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGG 884 (898)
Q Consensus 805 rIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGG 884 (898)
||||+||+|||||||+|.+++++++++++++++++|++... .++||++++++..+|++|+++++++|+.|++||++||
T Consensus 809 rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~GG 886 (898)
T PTZ00092 809 RIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKHGG 886 (898)
T ss_pred HHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999986321 5799999998777889999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 002630 885 ILQYVIRNLIN 895 (898)
Q Consensus 885 iL~yv~~~~~~ 895 (898)
|||||+|++++
T Consensus 887 iL~yv~~~~~~ 897 (898)
T PTZ00092 887 ILQYVLRKLVK 897 (898)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=2.3e-264 Score=2297.32 Aligned_cols=864 Identities=64% Similarity=1.054 Sum_probs=824.5
Q ss_pred eeEEEeCCCCC--CCCCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCceeEeeecceeeecCCCchhHHH
Q 002630 22 FGKYYSLPALN--DPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVV 99 (898)
Q Consensus 22 ~~~~~~l~~~~--~~~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~ 99 (898)
.|+||+|++|. ..+++||||||||||||+||||||..++++++++|++|......+.||+|+||||+||||||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 69999999885 3479999999999999999999999999999999999976665678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCc
Q 002630 100 DLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSG 179 (898)
Q Consensus 100 dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~G 179 (898)
|||||||+++++|+||.+|||.+||+|+||||||++.++..+++..|+.+||+||.|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccccceeeecCC----CcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEeccc
Q 002630 180 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 255 (898)
Q Consensus 180 I~Hqv~lE~la~~v~~~~----G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L 255 (898)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHH
Q 002630 256 RDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS 335 (898)
Q Consensus 256 ~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~ 335 (898)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCC-CCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCccCcccccccc
Q 002630 336 MIESYLRANKMFVDYSE-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKV 414 (898)
Q Consensus 336 ~~~~y~~~~~l~~~~~d-~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (898)
++++|+|+|++|+ +| ++|.|+++++||||+|||+||||++|||++||++++++|.+++..+.+.+++.+..+ .
T Consensus 322 l~~~y~k~~~l~~--~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~----~ 395 (876)
T TIGR01341 322 LVEKYARAQGLFY--DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE----P 395 (876)
T ss_pred HHHHHHHhccccc--CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh----h
Confidence 9999999999994 55 789999999999999999999999999999999999998877654333233322111 1
Q ss_pred ceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHH
Q 002630 415 AEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 494 (898)
Q Consensus 415 ~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~ 494 (898)
....++|++..|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 396 ~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 475 (876)
T TIGR01341 396 LKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLE 475 (876)
T ss_pred hheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHH
Confidence 11224688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHcccccccCCC
Q 002630 495 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 574 (898)
Q Consensus 495 ~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~ 574 (898)
++||+|++|||++||||||+++++++++|.+|+++.+||||+||||+|||||..++||||||++||||||+|+|++|+++
T Consensus 476 ~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~ 555 (876)
T TIGR01341 476 ELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYT 555 (876)
T ss_pred HcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCcC
Q 002630 575 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDM 654 (898)
Q Consensus 575 ~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~ 654 (898)
||+|.++||++|||+||||+.+||++++.++++++||++.|.+++.+++.|++|+++.++.|+||++||||++||||+++
T Consensus 556 dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~ 635 (876)
T TIGR01341 556 EPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEM 635 (876)
T ss_pred CCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhh
Q 002630 655 TMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNK 734 (898)
Q Consensus 655 ~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~ 734 (898)
+.+++++.+|++||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||+||||+|+|++|+
T Consensus 636 ~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N~ 715 (876)
T TIGR01341 636 KQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNL 715 (876)
T ss_pred ccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhhh
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccC
Q 002630 735 LLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGM 814 (898)
Q Consensus 735 l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~ 814 (898)
|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+||
T Consensus 716 l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~ 795 (876)
T TIGR01341 716 MVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVGM 795 (876)
T ss_pred cccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEecCCCHHHHHHHHhcCHHHHHH
Q 002630 815 GIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQYVI 890 (898)
Q Consensus 815 GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~--~~G--~~~~~~~~~~t~~e~~~~~aGGiL~yv~ 890 (898)
|||||+|++++++++|+++|+|+|+|.... +++||++++++. .+| ++|.+++++||+.|++||++|||||||+
T Consensus 796 Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~ 872 (876)
T TIGR01341 796 GVIPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVL 872 (876)
T ss_pred CcceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999995332 578999888764 577 7899999999999999999999999999
Q ss_pred HHHh
Q 002630 891 RNLI 894 (898)
Q Consensus 891 ~~~~ 894 (898)
|+++
T Consensus 873 r~~~ 876 (876)
T TIGR01341 873 RKFL 876 (876)
T ss_pred HhhC
Confidence 9974
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=6.9e-263 Score=2291.55 Aligned_cols=872 Identities=58% Similarity=0.981 Sum_probs=830.2
Q ss_pred CcccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCceeEe
Q 002630 5 NPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIP 81 (898)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~ 81 (898)
++|.. +++|+++++ .|+||+|.+++. .+++||||||||||||+||||||..|+++++++|++|......+.||+
T Consensus 4 ~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei~ 80 (889)
T PRK12881 4 NLHKT-LKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEIP 80 (889)
T ss_pred Ccccc-ccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCceec
Confidence 67753 467888754 899999999853 379999999999999999999999999999999999987666678999
Q ss_pred eecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhh
Q 002630 82 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFL 161 (898)
Q Consensus 82 ~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~fl 161 (898)
|+||||+|||+||+|+++|||||||+++++|+||.++||.+||+++|||+||++.++..+++.+|+.+||+||.|||+||
T Consensus 81 ~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fL 160 (889)
T PRK12881 81 FVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFL 160 (889)
T ss_pred cccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeeCCCCcceeeeeccccceeeecC----CCcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCC
Q 002630 162 KWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQ 237 (898)
Q Consensus 162 k~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~----~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~ 237 (898)
||++++|+||+|+|||+|||||||+||||+||+.+ +|+++||++|||||||||+||||+|||||||+|++++|+||
T Consensus 161 kw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq 240 (889)
T PRK12881 161 KWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 240 (889)
T ss_pred HHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCC
Confidence 99999999999999999999999999999999965 37999999999999999999999999999999999999999
Q ss_pred cEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCC
Q 002630 238 PMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD 317 (898)
Q Consensus 238 ~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D 317 (898)
|+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+||||+|
T Consensus 241 ~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~D 320 (889)
T PRK12881 241 PVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVD 320 (889)
T ss_pred cEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcc
Q 002630 318 HVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDN 397 (898)
Q Consensus 318 ~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~ 397 (898)
++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++|.+++..
T Consensus 321 e~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~-~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~ 399 (889)
T PRK12881 321 EQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD-PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSK 399 (889)
T ss_pred hhHHHHHHhcccchHHHHHHHHHHHHHHhhcC-cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhh
Confidence 99999999999999999999999999999975 68899999999999999999999999999999999999998876643
Q ss_pred cccCCCccCccccccccceecc---CCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEE
Q 002630 398 RVGFKGFAIPKEYQSKVAEFNF---HGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLA 474 (898)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~---~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~ 474 (898)
....+++ .| .+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 400 ~~~~~~~-------------~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 400 PVAENGF-------------AKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred HHHhhhh-------------hcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 2111111 12 2345578899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeec
Q 002630 475 PGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLA 554 (898)
Q Consensus 475 PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLa 554 (898)
|||++|++||+++||+++|+++||+|++||||+||||||+++++++++|++|++++++|||+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CHHHHHHHHHcccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCC
Q 002630 555 SPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGT 634 (898)
Q Consensus 555 SP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 634 (898)
||++||||||+|+|++|+++||||+++||++|||+||||+.+||++++++.+++++|.+.|++++.+++.|++|+++.++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccc
Q 002630 635 LYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSR 714 (898)
Q Consensus 635 ~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsr 714 (898)
+|+||++||||++||||+++...++++++|++||||+++|||||||||||||+|+++||||+||+++|+.++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhcccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccC
Q 002630 715 RGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG 794 (898)
Q Consensus 715 rgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lG 794 (898)
|||||||+||||+|+|++|+|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEE--cCCC--EEEEEEec
Q 002630 795 VKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIR 870 (898)
Q Consensus 795 V~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~--~~~G--~~~~~~~~ 870 (898)
|+||||+||+||||+||+|||||||+|+++.++++|+++++|+++|+.... .++||++++++ ..+| .+|+++++
T Consensus 787 v~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r 864 (889)
T PRK12881 787 VKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCR 864 (889)
T ss_pred CcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999999999999985542 57899988865 3566 67888999
Q ss_pred CCCHHHHHHHHhcCHHHHHHHHHhh
Q 002630 871 FDTEVELAYFDHGGILQYVIRNLIN 895 (898)
Q Consensus 871 ~~t~~e~~~~~aGGiL~yv~~~~~~ 895 (898)
++|+.|++||++|||||||++++++
T Consensus 865 ~dt~~e~e~~~aGGiL~yv~~~~~~ 889 (889)
T PRK12881 865 IDTPIEVDYYKAGGILPYVLRQLLA 889 (889)
T ss_pred cCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 9999999999999999999999863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=1.7e-262 Score=2283.61 Aligned_cols=877 Identities=60% Similarity=1.026 Sum_probs=835.2
Q ss_pred CCCCCcccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCc
Q 002630 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQ 77 (898)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~ 77 (898)
|...++|.. +++|+++++ .|+||+|.++.. .+++||||||||||||+|||||+..++++++++|++|......+
T Consensus 1 ~~~~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~ 77 (888)
T PRK09277 1 MSSTDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPD 77 (888)
T ss_pred CCCCCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCC
Confidence 445577754 567887754 899999988743 47999999999999999999999999999999999998766667
Q ss_pred eeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhh
Q 002630 78 VEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKER 157 (898)
Q Consensus 78 ~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~er 157 (898)
.||+|+||||+|||+||+|+++|||||||+++++|+||++|||.+||+|||||+||+++++..+++.+|+.+||+||.||
T Consensus 78 ~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er 157 (888)
T PRK09277 78 REIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEER 157 (888)
T ss_pred ceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccceeeCCCCcceeeeeccccceeeecC-CC--cccCCeEeecCCCCcccCcccceeecCCHHHHHHHH
Q 002630 158 FAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAM 234 (898)
Q Consensus 158 y~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~-~G--~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am 234 (898)
|.||||++++|+|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|++++|
T Consensus 158 ~~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam 237 (888)
T PRK09277 158 YQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAM 237 (888)
T ss_pred HhHHHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHH
Confidence 999999999999999999999999999999999999977 78 999999999999999999999999999999999999
Q ss_pred cCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccc
Q 002630 235 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFF 314 (898)
Q Consensus 235 ~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~f 314 (898)
+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|||
T Consensus 238 ~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~f 317 (888)
T PRK09277 238 LGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFF 317 (888)
T ss_pred hcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhh
Q 002630 315 PVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHAC 394 (898)
Q Consensus 315 p~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~ 394 (898)
|+|++|++||+.|||++++++++++|.|++++|+ .+|++|.|+++++||||+|+|+||||++|||++||+|+++.|.++
T Consensus 318 p~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~-~~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~ 396 (888)
T PRK09277 318 PIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWR-DPLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKS 396 (888)
T ss_pred cCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhc-cCCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhh
Confidence 9999999999999999999999999999999996 258899999999999999999999999999999999999887654
Q ss_pred hcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEE
Q 002630 395 LDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLA 474 (898)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~ 474 (898)
+.. +.+++ ..+..++|....|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~ 465 (888)
T PRK09277 397 AEL--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLA 465 (888)
T ss_pred chh--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEe
Confidence 321 11111 1233467888899999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeec
Q 002630 475 PGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLA 554 (898)
Q Consensus 475 PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLa 554 (898)
|||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|++|+++++||||+||||+|||||..++||||
T Consensus 466 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLa 545 (888)
T PRK09277 466 PGSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLA 545 (888)
T ss_pred CCCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCC
Q 002630 555 SPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGT 634 (898)
Q Consensus 555 SP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 634 (898)
||++||||||+|+|+||+++||+|+++||++|||+||||+.+||++++.+.+++++|++.|.+++.+++.|++|++++++
T Consensus 546 SP~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 625 (888)
T PRK09277 546 SPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGP 625 (888)
T ss_pred CHHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCccccc
Q 002630 635 LYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSR 714 (898)
Q Consensus 635 ~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsr 714 (898)
.|+||++||||++||||++++.++.++.+|.++|||+++|||||||||||||+|+++||||+||+++|+.++||||||||
T Consensus 626 ~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsr 705 (888)
T PRK09277 626 LYDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSR 705 (888)
T ss_pred ccccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccc
Confidence 99999999999999999999887777889999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhcccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccC
Q 002630 715 RGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG 794 (898)
Q Consensus 715 rgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lG 794 (898)
|||||||+||||+|+|++|+|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||+|++++||
T Consensus 706 RgN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lg 785 (888)
T PRK09277 706 RGNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLG 785 (888)
T ss_pred cccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEE--cCCC--EEEEEEec
Q 002630 795 VKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIR 870 (898)
Q Consensus 795 V~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~--~~~G--~~~~~~~~ 870 (898)
|+||||+||+||||+||+|||||||+|++++++++|+|+++|+|+|+... +++||++++++ ..+| ++|.++++
T Consensus 786 i~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r 862 (888)
T PRK09277 786 VKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCR 862 (888)
T ss_pred CcEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999996433 47899988874 3566 78999999
Q ss_pred CCCHHHHHHHHhcCHHHHHHHHHhh
Q 002630 871 FDTEVELAYFDHGGILQYVIRNLIN 895 (898)
Q Consensus 871 ~~t~~e~~~~~aGGiL~yv~~~~~~ 895 (898)
+||+.|++||++|||||||+|++++
T Consensus 863 ~dt~~Ei~y~~~GGiL~yv~r~~~~ 887 (888)
T PRK09277 863 IDTAVEVDYYRNGGILQYVLRDLLA 887 (888)
T ss_pred cCCHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999999999999999875
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=9.9e-258 Score=2233.16 Aligned_cols=834 Identities=45% Similarity=0.800 Sum_probs=793.9
Q ss_pred eeEEEeCC-CCCC---CCCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCceeEeeecceeeecCCCchhH
Q 002630 22 FGKYYSLP-ALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPA 97 (898)
Q Consensus 22 ~~~~~~l~-~~~~---~~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a 97 (898)
.|+||+|. ++.. .+++||||||||||||+||||||..++++ +++|++| ..+.||+|+|+||+||||||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w----~~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIER----KRDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcC----CCCCeeccCcceeeeccccCcch
Confidence 69999996 6642 37999999999999999999999999988 9999999 23579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc-cHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCC
Q 002630 98 VVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR-SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPP 176 (898)
Q Consensus 98 ~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~-~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~pp 176 (898)
++|||+|||+++++|+||++|||.+||+||||||||+|+++ +++|+..|+.+||+||.|||+|||||+++|+|++|+||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCcceeeeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccC
Q 002630 177 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 256 (898)
Q Consensus 177 g~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~ 256 (898)
|+|||||||+||||+||++++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHH
Q 002630 257 DGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSM 336 (898)
Q Consensus 257 ~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~ 336 (898)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccce
Q 002630 337 IESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 416 (898)
Q Consensus 337 ~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (898)
+|+|.|++++|++ +|++|+|+++++||||+|||+||+|++|||++||+|++..... .... .
T Consensus 327 ve~y~k~~~l~~d-~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~--~---- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD-SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE--E---- 387 (858)
T ss_pred HHHHHHHHHhhcC-cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc--c----
Confidence 9999999999964 5679999999999999999999999999999999998752110 0000 0
Q ss_pred eccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhc
Q 002630 417 FNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 496 (898)
Q Consensus 417 ~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~a 496 (898)
...| .+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++
T Consensus 388 -~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~a 463 (858)
T TIGR02333 388 -QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQL 463 (858)
T ss_pred -cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHc
Confidence 0123 488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHcccccccCCCCC
Q 002630 497 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEP 576 (898)
Q Consensus 497 G~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~p 576 (898)
||+|++||||+||||+|++.++++++|.+++++.++|||+||||+||||+..+++|||||++||||||+|+|+||+++||
T Consensus 464 Gf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dp 543 (858)
T TIGR02333 464 GFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDV 543 (858)
T ss_pred CCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCcCCC
Q 002630 577 VGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTM 656 (898)
Q Consensus 577 lg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~ 656 (898)
||.|+||++|||+||||+.+||++++++.++|++|++.|++++.+++ ++++.+++|+||++||||++||||+++
T Consensus 544 lg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~-- 617 (858)
T TIGR02333 544 LGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA-- 617 (858)
T ss_pred cccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC--
Confidence 99999999999999999999999999999999999999999988876 788889999999999999999999987
Q ss_pred CCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhc
Q 002630 657 SPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 736 (898)
Q Consensus 657 ~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~ 736 (898)
+.++.+|++||+|+++||+||||||||||+|+++||||+||+++|+.+++|||||+||||||||+||||+|+|++|+|+
T Consensus 618 -~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~ 696 (858)
T TIGR02333 618 -LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMV 696 (858)
T ss_pred -CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhc
Confidence 3455799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--C--CCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhc
Q 002630 737 N--G--EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLV 812 (898)
Q Consensus 737 ~--g--~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nli 812 (898)
+ | .+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+
T Consensus 697 ~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~ 776 (858)
T TIGR02333 697 KNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLV 776 (858)
T ss_pred cccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhhhh
Confidence 8 4 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEc--CCC--EEEEEEecCCCHHHHHHHHhcCHHHH
Q 002630 813 GMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVT--DSG--KSFTCVIRFDTEVELAYFDHGGILQY 888 (898)
Q Consensus 813 n~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~--~~G--~~~~~~~~~~t~~e~~~~~aGGiL~y 888 (898)
|||||||+|.+++++++|+|+|.|+|+|. . +++||++++++. .+| .+|.+++++||+.|++||++||||||
T Consensus 777 ~~G~lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL~~ 851 (858)
T TIGR02333 777 GMGVLPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQR 851 (858)
T ss_pred hcCcceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999983 2 468999887763 577 78999999999999999999999999
Q ss_pred HHHHHhh
Q 002630 889 VIRNLIN 895 (898)
Q Consensus 889 v~~~~~~ 895 (898)
|+|++++
T Consensus 852 v~~~~~~ 858 (858)
T TIGR02333 852 FAQDFLE 858 (858)
T ss_pred HHHHhhC
Confidence 9999863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=5e-256 Score=2191.50 Aligned_cols=851 Identities=60% Similarity=1.015 Sum_probs=814.5
Q ss_pred ccceecCCCCceeEEEeCCCCCCC-CCCCCChhhHHHHhhhccccCccCCcHHHHHHHHhhhcCCCCceeEeeecceeee
Q 002630 11 LKTLQRPDGGEFGKYYSLPALNDP-RIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLL 89 (898)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lP~s~rvLlE~~lR~~~~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~ 89 (898)
++++.++++ .|+||+|++++.. .+++||||+|||+||++|++|+ ++++++.++.|........||.|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 467888764 8999999999753 7999999999999999999998 789999999998665567799999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccc
Q 002630 90 QDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFH 169 (898)
Q Consensus 90 qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~ 169 (898)
|||||+|+++|+|+||+++.++|+||+++||.+||+|+||||++++.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCcceeeeeccccceeeecCCCcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecCcEEEE
Q 002630 170 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 249 (898)
Q Consensus 170 ~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV 249 (898)
||+|+|||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHHHhhcCC
Q 002630 250 KLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 329 (898)
Q Consensus 250 ~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr 329 (898)
+|+|+|++|||||||||+|+++||++|+||||||||||||++||+++|+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCccCccc
Q 002630 330 SDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKE 409 (898)
Q Consensus 330 ~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 409 (898)
.+++++++|+|+++|++|++.+|++|+|+++++||||+|+|+||||++||++++|++++++|.+.+.....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~--------- 391 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDPADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEI--------- 391 (861)
T ss_pred chHHHHHHHHHHHHhcccCCccccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhc---------
Confidence 99999999999999999998888899999999999999999999999999999999999998876543211
Q ss_pred cccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCc
Q 002630 410 YQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGL 489 (898)
Q Consensus 410 ~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl 489 (898)
+..+...|+ .+.||+|+||+|||||||||||+|+||+||||||+++|++++|||||+|+|||++|.+||+++||
T Consensus 392 ----~~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl 465 (861)
T COG1048 392 ----KRVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGL 465 (861)
T ss_pred ----ccccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCC
Confidence 011333444 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 490 QKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 490 ~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
+++|+++||.+++|||||||||||+|++++++.|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+++
T Consensus 466 ~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~ 545 (861)
T COG1048 466 LPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTIN 545 (861)
T ss_pred HHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccCCCcccccccCCCCCccccCCCCccccCCC
Q 002630 570 IDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPP 649 (898)
Q Consensus 570 ~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp 649 (898)
+|+++||+|.++||++|||+||||+.+||.+.+.+.+.+++|.+.|.++|. |+.++++.+++|.|++.||||++||
T Consensus 546 ~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP 621 (861)
T COG1048 546 FDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPP 621 (861)
T ss_pred cCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCC
Confidence 999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred CCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccch
Q 002630 650 YFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANI 729 (898)
Q Consensus 650 ~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~ 729 (898)
||+.+...+.+ |+++|+|+++|||||||||||||+|+++|||++||.++|+.+.|||||||||||||||+||||+|+
T Consensus 622 ~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNi 698 (861)
T COG1048 622 FFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANI 698 (861)
T ss_pred ccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhccc
Confidence 99998776543 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhh
Q 002630 730 RLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRS 809 (898)
Q Consensus 730 r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~ 809 (898)
|++|+|+++ +|++|+++|+|+ |||+|++|+++|+|+|||||+|||+|||||||||++++|||+||||+|||||||+
T Consensus 699 r~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrS 774 (861)
T COG1048 699 RIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRS 774 (861)
T ss_pred ccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHh
Confidence 999999998 999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEE--cCCC--EEEEEEecCCCHHHHHHHHhcCH
Q 002630 810 NLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGI 885 (898)
Q Consensus 810 Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~--~~~G--~~~~~~~~~~t~~e~~~~~aGGi 885 (898)
||||||||||||++++++++|++++.+.++|.+.+ .++|+.+++|+ ..|| .++.+.++++|+.|++||++|||
T Consensus 775 NLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGi 851 (861)
T COG1048 775 NLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGI 851 (861)
T ss_pred hcccceeeeeeccCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCch
Confidence 99999999999999999999999999999887665 57888877776 3566 67899999999999999999999
Q ss_pred HHHHHHHHhh
Q 002630 886 LQYVIRNLIN 895 (898)
Q Consensus 886 L~yv~~~~~~ 895 (898)
|||+++++++
T Consensus 852 L~~v~~~~~~ 861 (861)
T COG1048 852 LNYVKRDLLK 861 (861)
T ss_pred HHHHHHHhhC
Confidence 9999999763
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.9e-178 Score=1565.97 Aligned_cols=697 Identities=29% Similarity=0.447 Sum_probs=599.1
Q ss_pred cHHHHHHHHhhhcCC-------------CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 002630 60 KSKDVEKIIDWETTS-------------PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL 126 (898)
Q Consensus 60 ~~~~ie~il~~~~~~-------------~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~l 126 (898)
.+|++||||+.|.+. ..+++|.++|||||+||+||+|+++||++| |. + +|.+|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~-~---~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GL-P---QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC-C---CCCCCCeE
Confidence 689999999999753 234689999999999999999999999754 43 2 34456789
Q ss_pred EecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eE
Q 002630 127 VIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 205 (898)
Q Consensus 127 viDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tv 205 (898)
++||++|++.... .++..++.||.|+|+|++|.+++| |++|+|||+||||||++|+ +++|| ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~----------~a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhh----------ccCCCCeE
Confidence 9999999765432 457788999999999999999999 8999999999999999994 56786 69
Q ss_pred eecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEe
Q 002630 206 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFY 285 (898)
Q Consensus 206 vGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~ 285 (898)
|||||||||+||||+||||||++|++++|+|+++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccChhhhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHH-HHHHHHHhcccccccCCCCCeeeEEEEEE
Q 002630 286 GEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS-MIESYLRANKMFVDYSESERVYSSYLELN 364 (898)
Q Consensus 286 G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~-~~~~y~~~~~l~~~~~d~~a~Y~~~ieiD 364 (898)
|||+++||+++|||||||++|+|||+||||+|++|++||+.+||+++... .++.|. ..+| .+|++|.|+++++||
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~--~~~~--~~D~~a~Y~~~i~iD 307 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYS--FFKL--KADEGAQYDELIEID 307 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHh--cccc--cCCCCCCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999875422 233332 2344 579999999999999
Q ss_pred cCCcccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCC
Q 002630 365 LEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSN 444 (898)
Q Consensus 365 Ls~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~ 444 (898)
||+|||+||+|++|||++||+|+++++++ .|++ .+|+|||||||||||+
T Consensus 308 ls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNgr~ 356 (745)
T TIGR01340 308 LSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNSSY 356 (745)
T ss_pred ccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCCCH
Confidence 99999999999999999999999875432 1222 1478999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhc
Q 002630 445 PSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAIT 524 (898)
Q Consensus 445 ~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~ 524 (898)
|||+.||.+| |+|++ ++++|.|+++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++. .+.
T Consensus 357 ~Dl~~AA~il-k~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~~~ 428 (745)
T TIGR01340 357 EDMSRCASIV-KDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----DVK 428 (745)
T ss_pred HHHHHHHHHh-hhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----ccC
Confidence 9977666655 66654 567788999999999999999999999999999999999999999999987543 134
Q ss_pred cCceEEEEeeccCCCCCCCCC-CcCCceeecCHHHHHHHHHcccccccCCCCCcccCCCCceeecccCCCChHHHHHHhh
Q 002630 525 ENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQ 603 (898)
Q Consensus 525 ~~~~~~~~vsS~NRNF~GR~g-~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~ 603 (898)
+|+.+ ++|||+||||+|||| ...+.+|||||++||||||+|+|++|+++||| .+++|++|||+ ||+.+|+++.
T Consensus 429 ~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~-- 502 (745)
T TIGR01340 429 KGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK-- 502 (745)
T ss_pred CCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh--
Confidence 57754 689999999999995 45577999999999999999999999999999 69999999999 8999998775
Q ss_pred hccCchhhhhhcccccCCCcccccccCC--CCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCc
Q 002630 604 KSVLPDMFKATYEAITKGNPMWNQLSVP--SGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDH 681 (898)
Q Consensus 604 ~~~~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDh 681 (898)
+| ...+..|+.+..+ ++..|+|+++||||++||+|++. +..+|+++|||+++||||||||
T Consensus 503 ------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~~~~i~~a~vLlk~gd~iTTDH 564 (745)
T TIGR01340 503 ------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----NGKDLSGLRVLIKVTGKCTTDH 564 (745)
T ss_pred ------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----CcCCccCCeEEEEECCCcChhc
Confidence 12 2345667766553 66789999999999999999643 4578999999999999999999
Q ss_pred ccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcC--CCCCC--ceeecCCCcccccch
Q 002630 682 ISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP--KTIHIPTGEKLSVFD 757 (898)
Q Consensus 682 IsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~--g~~g~--~t~~~p~g~~~~i~~ 757 (898)
||||| .||.++ |+|.|++ .|.|.. +.+++ .|.+.|+|+.+++++
T Consensus 565 IsPAG---------~~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~~~ 612 (745)
T TIGR01340 565 ISAAG---------PWLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTIPE 612 (745)
T ss_pred ccccc---------hhHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccchHH
Confidence 99998 589874 4555655 555542 22344 577778999999999
Q ss_pred HHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeE
Q 002630 758 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHER 837 (898)
Q Consensus 758 ~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~ 837 (898)
+|++|++.++|+|||||+||||||||||||+++++|||+||||+||+||||+||||||||||+|.++++++.+. .+++
T Consensus 613 ~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~--~gd~ 690 (745)
T TIGR01340 613 LARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ--PGDE 690 (745)
T ss_pred HHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcC--CCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888765 3455
Q ss_pred EEEe-CCCCcccCCC---CceEEEE--cCCC--EEEEEEecCCCHHHHHHHHhcCHHHHH
Q 002630 838 YTID-LPSSVSEIRP---GQDVRVV--TDSG--KSFTCVIRFDTEVELAYFDHGGILQYV 889 (898)
Q Consensus 838 ~~Id-~~~~~~~l~~---g~~v~v~--~~~G--~~~~~~~~~~t~~e~~~~~aGGiL~yv 889 (898)
+++. +.+ +.| ++.+++. ..+| ++|.+++++ |+.|++||++||+|||+
T Consensus 691 ~~~~~l~~----~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny~ 745 (745)
T TIGR01340 691 VATLNLYE----MLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNLM 745 (745)
T ss_pred EEEcChhh----ccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccCC
Confidence 5553 432 333 5566643 3455 778888888 99999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=2.9e-164 Score=1438.87 Aligned_cols=638 Identities=33% Similarity=0.517 Sum_probs=557.2
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EecCCCCcC
Q 002630 60 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL-VIDHSVQVD 135 (898)
Q Consensus 60 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~l-viDH~v~~~ 135 (898)
++|++||||+.|.... .+.+|.++||||++||+||++++++|++| |.++ ..+| .++ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p---~~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTE---LSVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCC---CeEEECCCCCCCC
Confidence 4789999999997532 56789999999999999999999998765 6654 3344 344 899988876
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCCeEeecCCCCccc
Q 002630 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMI 215 (898)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~ 215 (898)
. .||.++|+|++|++++| |++|+|||+||||||++|+|++ +| +++|||||||||+
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~ 125 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTA 125 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcC
Confidence 3 58999999999999999 8999999999999999996554 23 6899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChh
Q 002630 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (898)
Q Consensus 216 galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 295 (898)
||||+||||||++|++++|+|+++||++||||+|+|+|+|++|||+|||||+|+++|+.+|++||+|||+|||+++||++
T Consensus 126 GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~ 205 (646)
T PRK07229 126 GGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVP 205 (646)
T ss_pred CcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCC
Q 002630 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGP 375 (898)
Q Consensus 296 ~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P 375 (898)
+|||||||++|+|||+||||+|++|++||+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~-----------~l--~~D~~a~Y~~~i~iDLs~leP~va~P 272 (646)
T PRK07229 206 ERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV-----------EL--LADPDAEYDEVIEIDLSELEPLIAGP 272 (646)
T ss_pred HHhhhhccccccCceEEEecCcHHHHHHHHhcCCcccce-----------ec--cCCCCCCeeEEEEEEccceeeeeecC
Confidence 999999999999999999999999999999999876542 12 57899999999999999999999999
Q ss_pred CCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHH
Q 002630 376 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 455 (898)
Q Consensus 376 ~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 455 (898)
++|||++||+|+++. +|++||||||||||+||+++||++|
T Consensus 273 ~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~iL- 312 (646)
T PRK07229 273 HSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASIL- 312 (646)
T ss_pred CCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHHh-
Confidence 999999999998631 3789999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeec
Q 002630 456 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 535 (898)
Q Consensus 456 ~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 535 (898)
+|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++. +. +|++ +|||
T Consensus 313 -----~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~~-------~~~~---~vst 376 (646)
T PRK07229 313 -----KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-PA-------TGNV---SLRT 376 (646)
T ss_pred -----cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-CC-------CCcE---EEEc
Confidence 899999999999999999999999999999999999999999999999998543 22 3554 7999
Q ss_pred cCCCCCCCCCCcCCceeecCHHHHHHHHHcccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhc
Q 002630 536 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATY 615 (898)
Q Consensus 536 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y 615 (898)
+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |+++||+ ||+. ..++.++|..
T Consensus 377 ~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~~-- 440 (646)
T PRK07229 377 FNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGIIA-- 440 (646)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhcC--
Confidence 9999999999988899999999999999999999 999999977 8999997 7882 2234444432
Q ss_pred ccccCCCcccccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHh
Q 002630 616 EAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAA 695 (898)
Q Consensus 616 ~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~ 695 (898)
.++.|+.++++ .++||+++|+|+++ +++.++++|+++|||||||||||+|+
T Consensus 441 -----~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~-------- 491 (646)
T PRK07229 441 -----PAEDGSDVEVV---------RGPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA-------- 491 (646)
T ss_pred -----CCccccccccc---------CCCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc--------
Confidence 34557666554 34688888887643 47899999999999999999999974
Q ss_pred hHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCC
Q 002630 696 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 775 (898)
Q Consensus 696 ~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~ 775 (898)
+||. +|+|+|.|.+++|.+.+ |.+ +.+++..+ ++|||||+
T Consensus 492 ~~l~--------------~r~~~~~l~~~~f~~~~--~~f-----------------------~~~~~~~~-~~iiVaG~ 531 (646)
T PRK07229 492 KWLP--------------YRSNIPNISEFVFEGVD--NTF-----------------------PERAKEQG-GGIVVGGE 531 (646)
T ss_pred chhc--------------cCCCHHHHHHHHhccCC--hhh-----------------------hHHHHhcC-CcEEEecC
Confidence 4765 37899999999998642 222 23566554 79999999
Q ss_pred ccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEE-eCCCCcccCCCCce
Q 002630 776 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTI-DLPSSVSEIRPGQD 854 (898)
Q Consensus 776 nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~I-d~~~~~~~l~~g~~ 854 (898)
|||||||||||||+++++||+||||+||+||||+||+|||||||+|.++++++.+ ..+|+++| ++.+ +.++.+
T Consensus 532 nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l--~~gd~i~i~dl~~----~~~~~~ 605 (646)
T PRK07229 532 NYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI--EEGDVLEIEDLRE----FLPGGP 605 (646)
T ss_pred ccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhc--CCCCEEEEccchh----cCCCCe
Confidence 9999999999999999999999999999999999999999999999887788765 45788998 6653 355666
Q ss_pred EEEEc-CCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002630 855 VRVVT-DSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 894 (898)
Q Consensus 855 v~v~~-~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 894 (898)
|+++. .+|++|.++.++ ++.|++|+++||||||+++++.
T Consensus 606 v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 606 LTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred EEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 66553 456889998887 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=3e-162 Score=1419.03 Aligned_cols=642 Identities=32% Similarity=0.489 Sum_probs=550.9
Q ss_pred HHHHHHHhhhcCCC---CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 002630 62 KDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (898)
Q Consensus 62 ~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~ 138 (898)
|++||||+.|.... .+.+|.++||||++||+||++++.+|++|+ . + ++.|. .+.+++||++|...
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~g-------~-~-~v~~~-~~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEALE-------M-D-EVKTE-LAAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHcC-------C-C-ccCCC-CeEEECCCCCCCCC--
Confidence 47899999997642 567899999999999999999999987663 3 2 34454 36789999988753
Q ss_pred cHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcccCc
Q 002630 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (898)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (898)
.||.++|+|++|.+++| ++.|+|||+||||||++|+|+ .| +++|||||||||+||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~t~Ga 124 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFA----------APGKTLLGSDSHTPTAGG 124 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhcc----------CCCCEEEecCcCcCCCCc
Confidence 16789999999999998 568999999999999999655 45 689999999999999
Q ss_pred ccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhh
Q 002630 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (898)
Q Consensus 218 lG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R 297 (898)
||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 125 lG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R 204 (658)
T TIGR01342 125 LGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPER 204 (658)
T ss_pred ccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCC
Q 002630 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKR 377 (898)
Q Consensus 298 ~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~ 377 (898)
||||||++|+|||+||||+|++|++||+.++|.+++.. + .+|++|.|+++++||||+|||+||+|++
T Consensus 205 ~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l---~~D~~a~Y~~~i~iDls~leP~va~P~~ 271 (658)
T TIGR01342 205 ATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L---LADADAEYADEIEIDLSDLEPLIAEPHM 271 (658)
T ss_pred hhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c---cCCCCCcEEEEEEEEccceeeeeeCCCC
Confidence 99999999999999999999999999999998764422 2 5899999999999999999999999999
Q ss_pred CCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHH
Q 002630 378 PHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKK 457 (898)
Q Consensus 378 P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~ 457 (898)
|||++||+|++. . +|+++|||||||||++||++||++|
T Consensus 272 Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il--- 309 (658)
T TIGR01342 272 PDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL--- 309 (658)
T ss_pred CCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh---
Confidence 999999999763 1 3568999999999999999999999
Q ss_pred HHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccC
Q 002630 458 ACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGN 537 (898)
Q Consensus 458 A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~N 537 (898)
+|+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+. +++ ++|||+|
T Consensus 310 ---~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~~---~~vst~N 375 (658)
T TIGR01342 310 ---EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SDG---VSLRSFN 375 (658)
T ss_pred ---CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CCc---EEEEccC
Confidence 89999999999999999999999999999999999999999999999999965532 244 3799999
Q ss_pred CCCCCCCCCcCCceeecCHHHHHHHHHcccccccCCCCCcccCCCCceeecccC-CCChHHHHHHhhhccCchhhhhhcc
Q 002630 538 RNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI-WPSSEEVAHVVQKSVLPDMFKATYE 616 (898)
Q Consensus 538 RNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~di-wP~~~ei~~~~~~~~~~~~f~~~y~ 616 (898)
|||+||||+..+.+|||||++||||||+|+| .|+.. ++. .+| |+ ||+.++ |+.|...|.
T Consensus 376 RNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~-~~g------~~~~p~~~~----------p~~~~~~~~ 435 (658)
T TIGR01342 376 RNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LAD-DEG------DLEAIGFEM----------GEKFPGGYD 435 (658)
T ss_pred CCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hcc-ccC------cccCCCCCC----------chhhccccc
Confidence 9999999998889999999999999999999 45542 332 234 45 886652 555655565
Q ss_pred cccCCCcccccccC---CCCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCCh
Q 002630 617 AITKGNPMWNQLSV---PSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSP 693 (898)
Q Consensus 617 ~i~~~~~~w~~l~~---~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~sp 693 (898)
..+ |+.++. ++.+++. |+||++||+|++++ .+|++ |++.++|||||||||+|||.
T Consensus 436 ~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~------ 493 (658)
T TIGR01342 436 AAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGA------ 493 (658)
T ss_pred ccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCc------
Confidence 433 766654 4444553 89999999998774 35777 99999999999999999975
Q ss_pred HhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEe
Q 002630 694 AAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILA 773 (898)
Q Consensus 694 a~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVA 773 (898)
.||.+ |+|.+.+.+.+|... +.+ +.+++++|++.+.++||||
T Consensus 494 --~~l~~--------------r~~~~~l~~~~~~~~-------------------~p~---f~~~~~~~~~~~~~~iiVa 535 (658)
T TIGR01342 494 --DILKF--------------RSNIEAISEFTLHRI-------------------DDE---FAERAKAADEKGKAGIIIA 535 (658)
T ss_pred --ccccc--------------CCCHHHHhhheeeCC-------------------Cch---HHHHhhcccccCCceEEEc
Confidence 24532 778888888887542 111 2367889998999999999
Q ss_pred CCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEe--CCCCcccCCC
Q 002630 774 GAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID--LPSSVSEIRP 851 (898)
Q Consensus 774 G~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id--~~~~~~~l~~ 851 (898)
|+|||||||||||||++++|||+||||+||+||||+||+|+|||||+|+++++++.+.. +++++|+ +.+ .+.|
T Consensus 536 G~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~--Gd~l~id~~l~~---~~~~ 610 (658)
T TIGR01342 536 GENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL--GDDIEIPDDLAA---ALAD 610 (658)
T ss_pred CCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCC--CCEEEECchhhh---hcCC
Confidence 99999999999999999999999999999999999999999999999998888888654 6777887 554 4678
Q ss_pred CceEEEE-cCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002630 852 GQDVRVV-TDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 894 (898)
Q Consensus 852 g~~v~v~-~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 894 (898)
|+..++. ..+|+++.+...+ ++.|++|+++||||||++++..
T Consensus 611 g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~ 653 (658)
T TIGR01342 611 GEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHR 653 (658)
T ss_pred CCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhc
Confidence 8655443 3466666666543 8999999999999999999764
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.6e-144 Score=1267.06 Aligned_cols=657 Identities=23% Similarity=0.345 Sum_probs=503.2
Q ss_pred HHHHHHHHhhhc-----CC--CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 002630 61 SKDVEKIIDWET-----TS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQ 133 (898)
Q Consensus 61 ~~~ie~il~~~~-----~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~ 133 (898)
+|++||||+.|. +. .+|.+|.++||++|+||.|+++++ +|. ++|. +...+|.. +++++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~-~~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGA-SKIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCC-CccCCCCC-EEEEcCCCCC
Confidence 688999999996 32 256789999999999999999864 343 3565 34667753 6789999999
Q ss_pred cCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCCC
Q 002630 134 VDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 212 (898)
Q Consensus 134 ~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT 212 (898)
.... .. .+.|+|++-..++| +++|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~--~~-------------~~~~~~l~~fAkk~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSD--KN-------------LKKYKNIEEFAKKH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCH--HH-------------HHHHHHHHHHHHHh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 8753 22 22333333333333 688999999999999999 7999996 579999999
Q ss_pred cccCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEec--CCcc
Q 002630 213 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYG--EGMS 290 (898)
Q Consensus 213 ~~~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G--~gv~ 290 (898)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccChhhhhhhhccCcccccccccccCCHHHHHHHhhcCCChh-----------hHH-----HHHHHHHhcccccccCCCC
Q 002630 291 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD-----------TVS-----MIESYLRANKMFVDYSESE 354 (898)
Q Consensus 291 ~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~-----------~~~-----~~~~y~~~~~l~~~~~d~~ 354 (898)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... ..+ .++.+.. . .+ .+|++
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~-~l--~aD~~ 282 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAE-I-PL--KADKD 282 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhh-c-cC--CCCCC
Confidence 999999999999999999999999999999999999976311 011 1222111 1 23 68999
Q ss_pred CeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEE
Q 002630 355 RVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIA 434 (898)
Q Consensus 355 a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a 434 (898)
|.|+++++||||+|+|+||+|++|++++|++++... |. +|++|
T Consensus 283 A~Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------------------------~~-------~Id~~ 325 (712)
T TIGR00139 283 AHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------------------------DI-------KIDKA 325 (712)
T ss_pred CCEEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------------------------Cc-------eeeeE
Confidence 999999999999999999999999999999987420 01 36799
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhCC---CccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCC
Q 002630 435 AITSCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGN 511 (898)
Q Consensus 435 ~IgSCTN~s~~dl~~aA~lLa~~A~~~G---~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~ 511 (898)
|||||||+|++||++||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|+
T Consensus 326 ~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~ 405 (712)
T TIGR00139 326 YLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGL 405 (712)
T ss_pred EEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCc
Confidence 9999999999999999999988888773 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHcccccccCCCCCcccCCCCceeecccC
Q 002630 512 SGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI 591 (898)
Q Consensus 512 ~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~di 591 (898)
+++++++ |++ +|||+||||+||||+..+.+|||||++||||||+|+|+ ||..+.. + +=
T Consensus 406 ~~~~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~It-----dPr~~~~---~----~~ 463 (712)
T TIGR00139 406 GAGLLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKIS-----GPAEVLS---P----EG 463 (712)
T ss_pred CCCCCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCccC-----CHHHHhc---c----cc
Confidence 9887644 554 78999999999999888899999999999999999995 5543210 0 00
Q ss_pred CCCh--H---HHHHHhhhccCchhhhhhcccc---cCCCcccccccCCCCCccccCCCCccccC--CCCCCcCCCCCCCC
Q 002630 592 WPSS--E---EVAHVVQKSVLPDMFKATYEAI---TKGNPMWNQLSVPSGTLYAWDPKSTYIHE--PPYFKDMTMSPPGP 661 (898)
Q Consensus 592 wP~~--~---ei~~~~~~~~~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~w~~~styi~~--pp~f~~~~~~~~~~ 661 (898)
||.. . .+.......++.+++...-..+ ....+.-.+...+. +.-+.+ .|.++++
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------- 527 (712)
T TIGR00139 464 WTEIIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILEGF------- 527 (712)
T ss_pred cccccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCCCC-------
Confidence 2210 0 0000001112333332111000 00000001111111 111111 2233322
Q ss_pred CccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCC
Q 002630 662 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 741 (898)
Q Consensus 662 ~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g 741 (898)
++....+++++.|||||||||+|+ +||....+ ..|.|.+..|.+.+
T Consensus 528 ~~~i~g~v~~~~gdnI~TD~I~P~----------~~~~~~~~-------------~~~~l~~~~~~~~d----------- 573 (712)
T TIGR00139 528 PEEFSGELVFCDADNINTDGIYPG----------KYTYQDDV-------------PKEKMAQVCMENYD----------- 573 (712)
T ss_pred CceEEEEEEEcCCCCCchhhccch----------hhcccCCC-------------CHHHHHHhhccCCC-----------
Confidence 233455899999999999999998 68742112 23456677776543
Q ss_pred CceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCccccccc
Q 002630 742 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 821 (898)
Q Consensus 742 ~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f 821 (898)
| +.+.+++. ..|||||+|||||||||||+++++++||+||||+||+|||+||++|+|||||+|
T Consensus 574 ------p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~ 636 (712)
T TIGR00139 574 ------A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGNIFSRNSINNALLGLEI 636 (712)
T ss_pred ------c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHHHHHhHHHhcCCceEEc
Confidence 1 12234443 479999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcc---------C--CCCeEEEEeCCCCcccCCCCceEEEEcCC----CEEEEEEecCCCHHHHHHHHhcCHH
Q 002630 822 KPGEDAETHG---------L--TGHERYTIDLPSSVSEIRPGQDVRVVTDS----GKSFTCVIRFDTEVELAYFDHGGIL 886 (898)
Q Consensus 822 ~~~~~~~~l~---------l--~g~e~~~Id~~~~~~~l~~g~~v~v~~~~----G~~~~~~~~~~t~~e~~~~~aGGiL 886 (898)
++. .+.|. + ..|++++||+.. ..|++ ..+ ++++..++...++..++++++|||+
T Consensus 637 ~~~--~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~--------g~i~~-t~g~~~~~~~~~~~~~~~p~~~~eii~~GGl~ 705 (712)
T TIGR00139 637 PAL--IKKLREKFGGADKELTRRTGWFLKWDVAD--------AKIEV-QEGSLDGGPILEHKVGELGKNLQEIIAKGGLE 705 (712)
T ss_pred hhH--HHHHHhhhcccccccccCCCCEEEEEccC--------CEEEE-CCCcccccceeEEEcCCCCHHHHHHHHcCCHH
Confidence 852 22222 2 247889999876 24555 222 2333444433588999999999999
Q ss_pred HHHHHHH
Q 002630 887 QYVIRNL 893 (898)
Q Consensus 887 ~yv~~~~ 893 (898)
+|+++++
T Consensus 706 ~~~k~~~ 712 (712)
T TIGR00139 706 GWVKNAI 712 (712)
T ss_pred HHHHhcC
Confidence 9999874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=7.4e-143 Score=1258.53 Aligned_cols=682 Identities=21% Similarity=0.278 Sum_probs=516.6
Q ss_pred cHHHHHHHHhhhcCCCCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 002630 60 KSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (898)
Q Consensus 60 ~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (898)
++|++||||+.|.....+..|.+++|++++||.|+++++..|. ++|.+ ++ | +|+.+++||+++....+.
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~-------~~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAK-------ASGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHH-------HcCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 5789999999998766666799999999999999998887664 35664 45 4 689999999999875433
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcccCcc
Q 002630 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 218 (898)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~gal 218 (898)
. |.+.|.|++...++| ++.|+|||+|||||+++|+| +.| +++|||||||| +|||
T Consensus 103 ~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~----------a~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 I-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMM----------AGGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred c-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCchhhc----------cCCCcEEEeeCcCcc-cchh
Confidence 2 334455555555555 46799999999999999954 456 58999999996 8999
Q ss_pred cceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCc-cceEEEEecCCccccChhhh
Q 002630 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV-VGMFVEFYGEGMSELSLADR 297 (898)
Q Consensus 219 G~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~-~gk~vEf~G~gv~~LS~~~R 297 (898)
|+|||||||+|++.+|+|+++|+++||+|+|+|+|+|++||+||||||+|+++|+.+|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred hhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCC
Q 002630 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKR 377 (898)
Q Consensus 298 ~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~ 377 (898)
||||||++|+|||+||||+|++|++||+.++|.+++.. + .+|++|.|+++++||||+|||+||+|++
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~----------l---~~D~~A~Yd~~ieiDLs~leP~VA~P~~ 304 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE----------L---NPQPMAYYDGCISVDLSAIKPMIALPFH 304 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee----------c---cCCCCCCeeEEEEEEcccceeeecCCCC
Confidence 99999999999999999999999999999999764321 2 5899999999999999999999999999
Q ss_pred CCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCC--ceEEEEeecCCCCCChHHHHHHHHHH
Q 002630 378 PHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHG--DVVIAAITSCTNTSNPSVMLGAALVA 455 (898)
Q Consensus 378 P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g--~V~~a~IgSCTN~s~~dl~~aA~lLa 455 (898)
|+|++||+|+.+++.++++.. ..++..+ ......++.. .+|.++ +|+|||||||||||++||+.||++|
T Consensus 305 Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~---~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~IL- 375 (751)
T PRK11413 305 PSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLL---DKIENGRLKVQQGIIAGCSGGNYENVIAAANAL- 375 (751)
T ss_pred hhhCcChhhcccchhhhcchh-hhhhhhh----hhhhcccccc---ccccCCCcEeeeEEEecCCCCCHHHHHHHHHHh-
Confidence 999999999998888766542 1111100 0001111111 012211 6889999999999999999999999
Q ss_pred HHHHhCCCccC-CceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEee
Q 002630 456 KKACELGLEVK-PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVL 534 (898)
Q Consensus 456 ~~A~~~G~kv~-p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vs 534 (898)
+|++|+ ++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|+++. +. ++++ ||+
T Consensus 376 -----kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~-~~-------~ge~---~is 439 (751)
T PRK11413 376 -----RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDT-PA-------NNGL---SIR 439 (751)
T ss_pred -----cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCc-CC-------CCCE---EEe
Confidence 999998 579999999999999999999999999999999999999999998644 32 3554 789
Q ss_pred ccCCCCCCCCCCcCCc-----eeecCHHHHHHHHHc-ccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCc
Q 002630 535 SGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLP 608 (898)
Q Consensus 535 S~NRNF~GR~g~~~~~-----~yLaSP~~VaA~Ala-G~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~ 608 (898)
|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ +.. .+.++.
T Consensus 440 TsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p---~~~~~~ 498 (751)
T PRK11413 440 HTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVP---EYAFDV 498 (751)
T ss_pred ecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCC---CcccCc
Confidence 9999999999998876 677779999999999 6995 4533320 11 111 123444
Q ss_pred hhhh-hhcccccCCCcccccccCCCCCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCC-cCcccCCC
Q 002630 609 DMFK-ATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT-TDHISPAG 686 (898)
Q Consensus 609 ~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~it-TDhIsPaG 686 (898)
++|. ..|...... ..+.-+..-|.|++++... ++.+-.-.+|+.|+||||| ||||||||
T Consensus 499 ~~y~~~~~~~~~~~------------------~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~paG 559 (751)
T PRK11413 499 TPYKNRVYQGFGKG------------------ATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIPSG 559 (751)
T ss_pred cccccccccCCCCC------------------CCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCccccccccCC
Confidence 4443 233211111 1122233333444433222 2234455689999999996 99999998
Q ss_pred CCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCC--CceeecCCCcccccchHHHHH--
Q 002630 687 SIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG--PKTIHIPTGEKLSVFDAAMRY-- 762 (898)
Q Consensus 687 ~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g--~~t~~~p~g~~~~i~~~a~~y-- 762 (898)
+||.+ |||-+-+...+|... .|.+...... ..-....+|. +.+.|+.|
T Consensus 560 ---------~~l~~--------------Rsn~~~is~~~~~~~--d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~~~~ 611 (751)
T PRK11413 560 ---------ETSSY--------------RSNPLGLAEFTLSRR--DPGYVGRSKAVAELENQRLAGN---VSELTEVFAR 611 (751)
T ss_pred ---------Ccccc--------------ccCHHHHhhhhcccc--ChhhHHHHHHHhhhhhhhhcCC---cHHHHHHHHh
Confidence 46654 677777777777432 3333210000 0000001121 12334444
Q ss_pred ------------HhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHH-HhhhhccCcccccccCCcchhhh
Q 002630 763 ------------KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERI-HRSNLVGMGIIPLCFKPGEDAET 829 (898)
Q Consensus 763 ------------~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarI-h~~Nlin~GilpL~f~~~~~~~~ 829 (898)
++.|.++||+ |.||||||||||||+++++|||+||||+||+|| ||+||||+|||||+|.+..
T Consensus 612 ~~~~~~~~~~~~~~~~~~~iv~-~~nyG~GSSREhAAla~r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~~---- 686 (751)
T PRK11413 612 IKQIAGQEHIDPLQTEIGSMVY-AVKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEEP---- 686 (751)
T ss_pred hhhccccccccccccCceEEEE-EeCCCCCccHHHHHHHHHHhCceEEEEeeehHHHHhhhhhhcCccceecCchh----
Confidence 4566665555 599999999999999999999999999999999 6669999999999998642
Q ss_pred ccCCCCeEEEEeCCCCcccCC-CCceE--EEEcCCC--EEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002630 830 HGLTGHERYTIDLPSSVSEIR-PGQDV--RVVTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIR 891 (898)
Q Consensus 830 l~l~g~e~~~Id~~~~~~~l~-~g~~v--~v~~~~G--~~~~~~~~~~t~~e~~~~~aGGiL~yv~~ 891 (898)
.+..++.++|+.... .+. ++..+ .+...+| +.+.+.+.-.++.|++||++||+|||+++
T Consensus 687 -~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~eil~aGGllny~k~ 750 (751)
T PRK11413 687 -TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGCLINYNKN 750 (751)
T ss_pred -hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEeCCCCHHHHHHHHcCCHHHHhhc
Confidence 466788899985532 232 22233 3333443 45555542248999999999999999976
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-137 Score=1144.62 Aligned_cols=704 Identities=31% Similarity=0.482 Sum_probs=581.0
Q ss_pred cHHHHHHHHhhhcCCC-------CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCC
Q 002630 60 KSKDVEKIIDWETTSP-------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSV 132 (898)
Q Consensus 60 ~~~~ie~il~~~~~~~-------~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v 132 (898)
.++..|||+..+.... .+.++.++||||+|||.|+.|++++|. ..|.. ++ .+|..+++||.+
T Consensus 58 p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFm-------s~Gl~--kv--avPstIhCdhli 126 (778)
T KOG0453|consen 58 PLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFM-------SSGLK--KV--AVPSTIHCDHLI 126 (778)
T ss_pred CchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHH-------hcCcc--cc--cCCceEEeccee
Confidence 4788899998774321 244799999999999999999999985 24554 33 246789999999
Q ss_pred CcCccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCC
Q 002630 133 QVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 211 (898)
Q Consensus 133 ~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSH 211 (898)
.+...+..| +.+.-+.|+|.|.||..+.++| |+.||+||+||+|||+|| + |+||+ ++||||||
T Consensus 127 ~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE---------n-YAfPG~m~igTDSH 190 (778)
T KOG0453|consen 127 EAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE---------N-YAFPGLMMIGTDSH 190 (778)
T ss_pred eeccCCcch-----hhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeee---------c-ccCCcceEEeccCC
Confidence 887666554 4556779999999999998776 799999999999999999 4 77886 68999999
Q ss_pred CcccCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccc
Q 002630 212 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSE 291 (898)
Q Consensus 212 T~~~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~ 291 (898)
|+++||||+|++||||+||+.+|+++||.+++|+++||+|+|+|+.|+++|||||++.+.|..+|++|++||||||||.+
T Consensus 191 Tpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~s 270 (778)
T KOG0453|consen 191 TPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNS 270 (778)
T ss_pred CCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccce
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccC
Q 002630 292 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPC 371 (898)
Q Consensus 292 LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~ 371 (898)
||++.|+|||||++|.|||+|+||.|+.+++||+.|||.+. .+..++|.++ +. .+|++|.|+++|+||||+|+|+
T Consensus 271 lSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l--~AD~~a~Ydk~ieIdLstL~P~ 345 (778)
T KOG0453|consen 271 LSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEI-AREARETLDA--IL--AADKGAHYDKIIEIDLSTLEPH 345 (778)
T ss_pred eccccceeeccccccccccccccCCCHHHHHHHHHhCcccc-hhhhHHhhhh--cc--cCCCCCCcceEEEEEhhhcccc
Confidence 99999999999999999999999999999999999999874 2344555555 33 6899999999999999999999
Q ss_pred ccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHH
Q 002630 372 VSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGA 451 (898)
Q Consensus 372 vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA 451 (898)
|.||++|+-..|++++.+..+ -+|||. +|..++||||||+||+|+-.+|
T Consensus 346 vnGPfTpdl~~pvskl~e~~~--------------------------kn~wp~-----~i~~gligSCTNSsyeDm~raa 394 (778)
T KOG0453|consen 346 VNGPFTPDLSTPVSKLGENSE--------------------------KNGWPI-----KIKVGLIGSCTNSSYEDMSRAA 394 (778)
T ss_pred cCCCCCccccChHHHHhHHhh--------------------------hcCCce-----eeeeeEEEeecCccHHHHHHHH
Confidence 999999999999999875311 145665 3557899999999999988888
Q ss_pred HHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEE
Q 002630 452 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 531 (898)
Q Consensus 452 ~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~ 531 (898)
.++ ++|..+|+ ++.|.+.|+|||.+|+..++|.|+++.|+++|+.+++.+||||||+|..-+ |++||. .+
T Consensus 395 ~iv-~~a~~~gl--k~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~d------vk~GE~-nt 464 (778)
T KOG0453|consen 395 DIV-KQAKGKGL--KPKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRKD------IKKGEK-NT 464 (778)
T ss_pred HHH-HHHHhcCC--CCCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccccc------ccCCCc-Cc
Confidence 775 88887776 555999999999999999999999999999999999999999999986521 445664 24
Q ss_pred EeeccCCCCCCCCCCcC-CceeecCHHHHHHHHHcccccccCCCCCcccCCCCceeecccCCCChHHHHHHhhhccCchh
Q 002630 532 AVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDM 610 (898)
Q Consensus 532 ~vsS~NRNF~GR~g~~~-~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~ 610 (898)
.|+|.||||.||++.+. ...||+||++|+|+|++|++.+|+++|.+ .+.||+.+.|+. |..+|+.+ +.++|..
T Consensus 465 ivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g~ 538 (778)
T KOG0453|consen 465 IVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPGQ 538 (778)
T ss_pred eeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCCc
Confidence 58999999999998665 45799999999999999999999999988 567999999876 77777644 3334311
Q ss_pred hhhhcccccCCCcccccccCCC-CCccccCCCCccccCCCCCCcCCCCCCCCCccccceEEeecCCCCCcCcccCCCCCC
Q 002630 611 FKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIH 689 (898)
Q Consensus 611 f~~~y~~i~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~ 689 (898)
..|+ .-+.+. ..-..-|+.|..++....|+. +.-+|+++..||+++..+|||||||-||+
T Consensus 539 --~ty~----------ap~~~~~~~~v~v~p~s~rlqlLepF~~-----w~gkd~edl~ilikv~gkCttDhIsaaGp-- 599 (778)
T KOG0453|consen 539 --DTYQ----------APPSSSSVVEVDVDPTSDRLQLLEPFDK-----WDGKDLEDLKILIKVKGKCTTDHISAAGP-- 599 (778)
T ss_pred --cccc----------CCCCCCCcceeecCCcccchhhcCCCCc-----ccccccccceEEEEEecccCccccccCCc--
Confidence 2232 111111 124566889999888877754 44578999999999999999999999984
Q ss_pred CCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCce
Q 002630 690 KDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDT 769 (898)
Q Consensus 690 ~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~ 769 (898)
||+++|+...-.|.+ |+ -..|+-. + +-..-.+.-+||...+.+.|+.||+.|++|
T Consensus 600 -------wlkY~Ghl~nisnn~---------~i-------gain~En-~-e~n~~~n~~~ge~~~vp~~~~~yk~~g~~w 654 (778)
T KOG0453|consen 600 -------WLKYRGHLENISNND---------LI-------GAINKEN-G-EANCVKNYLTGEFGTVPDTARDYKKHGIRW 654 (778)
T ss_pred -------ceeccchhhhcccch---------hh-------hhcchhh-h-hhhhhhhccccccCCcCchhhhHHhcCcee
Confidence 999988654443321 00 0111110 0 111223345788889999999999999999
Q ss_pred EEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccC
Q 002630 770 VILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEI 849 (898)
Q Consensus 770 IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l 849 (898)
|+|+++|||.||||||||..|+.||+++||.+||+|||.+||+++|+|||+|.++.+|+++. ..+.+++. ++.++
T Consensus 655 vvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~~~~~---~L~~~ 729 (778)
T KOG0453|consen 655 VVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADKVSIK---GLTRR 729 (778)
T ss_pred EEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcccchh---hhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999864 33444443 23366
Q ss_pred CCCceEEEE--cCCCEEEEEEecCC-CHHHHHHHHhcCHHHHHHH
Q 002630 850 RPGQDVRVV--TDSGKSFTCVIRFD-TEVELAYFDHGGILQYVIR 891 (898)
Q Consensus 850 ~~g~~v~v~--~~~G~~~~~~~~~~-t~~e~~~~~aGGiL~yv~~ 891 (898)
.||.++++. ..+|++++.++.+. +..|++||++|..|+++++
T Consensus 730 ~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 730 TPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred cCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHH
Confidence 788776654 45788888777664 7899999999999998765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=6.1e-130 Score=1080.04 Aligned_cols=400 Identities=76% Similarity=1.218 Sum_probs=389.0
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002630 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (898)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (898)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..++..+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cccccceeeCCCCcceeeeeccccceeeec----CCCcccCCeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEe
Q 002630 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 241 (898)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~----~~G~~~PdtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~ 241 (898)
++|.|++++|||+||||||++|+||+++++ ++|+++|+++|||||||||+||||+||||||++|++++|+||++|+
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 3589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHH
Q 002630 242 VLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTL 321 (898)
Q Consensus 242 ~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~ 321 (898)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccC
Q 002630 322 QYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 401 (898)
Q Consensus 322 ~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~ 401 (898)
+++++||||+|||+||||++|+|++||.
T Consensus 237 ------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~---------------- 264 (404)
T cd01586 237 ------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH---------------- 264 (404)
T ss_pred ------------------------------------ceEEEEEcccceeeecCCCCcccccCcC----------------
Confidence 5679999999999999999999999982
Q ss_pred CCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHH
Q 002630 402 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 481 (898)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~ 481 (898)
++|++||||||||||+||++.||++|+|||++||+||+||||++|+|||++|+
T Consensus 265 ---------------------------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~ 317 (404)
T cd01586 265 ---------------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVT 317 (404)
T ss_pred ---------------------------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHH
Confidence 14679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHH
Q 002630 482 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 561 (898)
Q Consensus 482 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA 561 (898)
++|+++|++++|.++||.|.+|||++|+|+++++.+.+++.+.+||+++++|||+||||+||||+..+++|||||++|||
T Consensus 318 ~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAA 397 (404)
T cd01586 318 KYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVA 397 (404)
T ss_pred HHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHH
Confidence 99999999999999999999999999999999998888888999999888999999999999999999999999999999
Q ss_pred HHHcccc
Q 002630 562 YALAGSV 568 (898)
Q Consensus 562 ~AlaG~i 568 (898)
+||+|+|
T Consensus 398 sAi~G~i 404 (404)
T cd01586 398 YALAGTV 404 (404)
T ss_pred HHhcccC
Confidence 9999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=6.7e-121 Score=1033.79 Aligned_cols=452 Identities=25% Similarity=0.367 Sum_probs=395.1
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc-
Q 002630 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (898)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~- 137 (898)
++|++|||++.|.... .++.+.++|||+++||+|+++++. +|| ++|. ..++| .++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~---~~~----~~g~--~v~~p-~~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFE---GLR----QAGR--KVRRP-QKTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHH---HHH----HcCC--CcCCC-cCEEEEeCCCCCCCCcc
Confidence 3689999999997643 566788999999999999999974 344 3452 34455 4689999999999763
Q ss_pred -ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 002630 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (898)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (898)
+..++...|+.+++++|.+||.+ + .+++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 46667888999999999999886 2 246789999999999999 899999 6899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChh
Q 002630 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (898)
Q Consensus 216 galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 295 (898)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccc-cCCCCCeeeEEEEEEcCCcccCccC
Q 002630 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVD-YSESERVYSSYLELNLEEVVPCVSG 374 (898)
Q Consensus 296 ~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~-~~d~~a~Y~~~ieiDLs~veP~vA~ 374 (898)
+|||||||++|+||++||||+|++|++||+.+++.+. .++|.+++.+|+. .+|++|.|+++++||||+|+|+||+
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l~~d~~a~Y~~~i~iDls~leP~Va~ 290 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTW 290 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhccCCCCCceeEEEEEEcccceeeecC
Confidence 9999999999999999999999999999998877543 3667788888865 5899999999999999999999999
Q ss_pred CCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHHH
Q 002630 375 PKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGAA 452 (898)
Q Consensus 375 P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 452 (898)
|++|+|++||+|+.+++....+.. ++.....+++|+|... .+.+++|++||||||||||++||++||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~ 360 (465)
T TIGR00170 291 GTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAA 360 (465)
T ss_pred CCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999876655432211 1111112333433322 3667799999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEE
Q 002630 453 LVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAA 532 (898)
Q Consensus 453 lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~ 532 (898)
+| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++ +
T Consensus 361 vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~---~ 424 (465)
T TIGR00170 361 VI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER---C 424 (465)
T ss_pred Hh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---E
Confidence 99 9999999999999999999999999999999999999999999999999999988655 454 5
Q ss_pred eeccCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 533 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 533 vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
+||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 425 isTsNRNF~GR~G~~~-~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 425 ASTSNRNFEGRQGRGG-RTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCceec
Confidence 7999999999999854 67999999999999999994
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=1.3e-120 Score=1032.89 Aligned_cols=452 Identities=28% Similarity=0.399 Sum_probs=399.0
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 002630 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (898)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~ 138 (898)
++|++|||++.|.... ++.+|.++|||+++||+|+++++.+|++| |. ..+||..+ .+++||++|++.++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4789999999997642 34489999999999999999999998653 42 47788875 58999999998732
Q ss_pred ---cHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCCCcc
Q 002630 139 ---SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 214 (898)
Q Consensus 139 ---~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~ 214 (898)
..+....|+.+++++|.++|.+ + .+++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------R--LFDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------e--eeccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3446678888999999998875 1 245678999999999999 8999997 69999999999
Q ss_pred cCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccCh
Q 002630 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 294 (898)
Q Consensus 215 ~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~ 294 (898)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccc-cCCCCCeeeEEEEEEcCCcccCcc
Q 002630 295 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVD-YSESERVYSSYLELNLEEVVPCVS 373 (898)
Q Consensus 295 ~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~-~~d~~a~Y~~~ieiDLs~veP~vA 373 (898)
++|||||||++|+||++||||+|++|++||+.++|.++. ++|.+++..|+. .+|++|.|+++++||||+|||+||
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~~~D~~a~Y~~~i~iDls~leP~va 291 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTLRSDADAVFDREVEIDAADIAPQVT 291 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcccCCCCCceEEEEEEEcccceEeec
Confidence 999999999999999999999999999999999998753 367777777765 689999999999999999999999
Q ss_pred CCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHH
Q 002630 374 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGA 451 (898)
Q Consensus 374 ~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA 451 (898)
+|++|+|++||+|+.+++.++++.. ++......++|++... .+.+.+|++||||||||||+|||++||
T Consensus 292 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA 361 (471)
T PRK12466 292 WGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAA 361 (471)
T ss_pred CCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHHH
Confidence 9999999999999998887765432 1111122345544332 256679999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEE
Q 002630 452 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 531 (898)
Q Consensus 452 ~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~ 531 (898)
++| ||+||+||||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|++++++++ |++
T Consensus 362 ~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~--- 425 (471)
T PRK12466 362 AVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER--- 425 (471)
T ss_pred HHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---
Confidence 999 9999999999999999999999999999999999999999999999999999887644 564
Q ss_pred EeeccCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 532 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 532 ~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
+|||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 426 ~vsT~NRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 426 CASTTNRNFEGRQGPG-ARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred EEEecCCCCCCCCCCC-CcEEECCHHHHHHHHhCcEeC
Confidence 7899999999999995 456999999999999999994
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=1.1e-119 Score=1025.37 Aligned_cols=452 Identities=26% Similarity=0.357 Sum_probs=397.9
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc-
Q 002630 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (898)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~- 137 (898)
.+|++|||++.|.... .+..|.+++||+++||.|+++++..| + ++|. ..++|. ++.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~---~----~~g~--~v~~p~-~~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGL---R----LAGR--KVRRPD-LTFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHH---H----HcCC--CccCCC-CeEEEcCCCCCCCccc
Confidence 3689999999997643 56678999999999999999998544 3 3453 366776 467899999999975
Q ss_pred -ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 002630 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (898)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (898)
+..++...|+.+++++|.+||.+. .+++.+|++|||||+++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGIT--------LFDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 466677889999999999998872 245678999999999999 799999 6899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChh
Q 002630 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (898)
Q Consensus 216 galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 295 (898)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|+.+|++||+|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccc-cCCCCCeeeEEEEEEcCCcccCccC
Q 002630 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVD-YSESERVYSSYLELNLEEVVPCVSG 374 (898)
Q Consensus 296 ~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~-~~d~~a~Y~~~ieiDLs~veP~vA~ 374 (898)
+|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++..|+. .+|++|+|+++++||||+|||+||+
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l~~D~~a~Y~~~i~iDls~leP~va~ 290 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTLKSDEDAVFDKVVTLDAADIEPQVTW 290 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcccCCCCCceeEEEEEEcccceeeecC
Confidence 999999999999999999999999999999654432 46778888888866 5799999999999999999999999
Q ss_pred CCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcc--cccCCceEEEEeecCCCCCChHHHHHHH
Q 002630 375 PKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGAA 452 (898)
Q Consensus 375 P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 452 (898)
|++|+|++||+|+.+++.++++.+. +.......+|++.+. .+.+++|++||||||||||+|||++||+
T Consensus 291 P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~ 360 (466)
T PRK05478 291 GTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAA 360 (466)
T ss_pred CCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHHH
Confidence 9999999999999998887765431 111122334443221 2677899999999999999999999999
Q ss_pred HHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEE
Q 002630 453 LVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAA 532 (898)
Q Consensus 453 lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~ 532 (898)
+| ||+||+||||++|+|||++|++||+++|++++|.++||.|.+||||+|+|++++.. .+|++ +
T Consensus 361 il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~---~ 424 (466)
T PRK05478 361 VV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER---C 424 (466)
T ss_pred Hh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---E
Confidence 99 99999999999999999999999999999999999999999999999999986643 34775 7
Q ss_pred eeccCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 533 VLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 533 vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
|||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 425 vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 425 ASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 8999999999999665 48999999999999999994
No 19
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=8.7e-121 Score=1037.25 Aligned_cols=457 Identities=39% Similarity=0.618 Sum_probs=368.1
Q ss_pred HHHHHHHhhhcCC----CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002630 62 KDVEKIIDWETTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (898)
Q Consensus 62 ~~ie~il~~~~~~----~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~ 137 (898)
|+.|||++.|... ..+.+|.++|||+|+||+||++++.+|++|+. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 5789999998653 23568999999999999999999999987753 2345543 78999999999875
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCCCcccC
Q 002630 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMID 216 (898)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~g 216 (898)
+.. |+..++.+|+++|+|++|.++.|....|.|++.||||||++| .|++.|+ ++|||||||||+|
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~gi~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~G 136 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFGIKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTYG 136 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCTTEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcCCceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchhh
Confidence 433 777889999999999999998885444444445999999999 7889995 7999999999999
Q ss_pred cccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhh
Q 002630 217 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLAD 296 (898)
Q Consensus 217 alG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~ 296 (898)
|||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++
T Consensus 137 alGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~ 216 (465)
T PF00330_consen 137 ALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMDD 216 (465)
T ss_dssp GGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HHH
T ss_pred hceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCC
Q 002630 297 RATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPK 376 (898)
Q Consensus 297 R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~ 376 (898)
|||||||++|+||++||||+|++|++||+.++|.++..++.+.|.+.+.+| +|++|.|+++++||||+|+|+||+|+
T Consensus 217 R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~---~D~dA~Y~~~i~iDls~leP~va~P~ 293 (465)
T PF00330_consen 217 RMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK---SDPDAEYDKVIEIDLSELEPQVAGPH 293 (465)
T ss_dssp HHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-----TT---SEEEEEEGGG-SSEEE-SS
T ss_pred hhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc---CCCccCeeEEEEEEcCccccccccCC
Confidence 999999999999999999999999999999999988777777777777775 89999999999999999999999999
Q ss_pred CCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCC--cccccCCceEEEEeecCCCCCChHHHHHHHHH
Q 002630 377 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT--PAQLRHGDVVIAAITSCTNTSNPSVMLGAALV 454 (898)
Q Consensus 377 ~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lL 454 (898)
+|+|++||+|+.+++.++.+.. . +......++|++. ...+.+++|++||||||||||+|||++||++|
T Consensus 294 ~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il 363 (465)
T PF00330_consen 294 SPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGIL 363 (465)
T ss_dssp STTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHH
T ss_pred CCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHHHHh
Confidence 9999999999999888765431 1 1112234555432 35788899999999999999999999999999
Q ss_pred HHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhcc-CceEEEEe
Q 002630 455 AKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITE-NDIVAAAV 533 (898)
Q Consensus 455 a~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~-~~~~~~~v 533 (898)
+++|+ +||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ ++ ++|
T Consensus 364 ~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~---~~v 432 (465)
T PF00330_consen 364 KGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGE---VCV 432 (465)
T ss_dssp HHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTE---EEE
T ss_pred hchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccc---eEE
Confidence 87776 799999999999999999999999999999999999999999999999995 2211 222 45 479
Q ss_pred eccCCCCCCCCCCcCCceeecCHHHHHHHHHcc
Q 002630 534 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 566 (898)
Q Consensus 534 sS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG 566 (898)
||+||||+||||+..+++|||||++||||||+|
T Consensus 433 st~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 433 STSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp ESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred EecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 999999999999999999999999999999998
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=3.3e-118 Score=996.78 Aligned_cols=409 Identities=32% Similarity=0.518 Sum_probs=363.8
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002630 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (898)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (898)
|||+||+||++++++|++| |. ++.++| .++++||++|++.++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 43 445554 488999999998766544 3567789999999999999
Q ss_pred cccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecC
Q 002630 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (898)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vP 244 (898)
++| |++|+|||+||||||++|+ +++|| ++|||||||||+||||+||||||++|++++|+|+++||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999993 67886 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHHH
Q 002630 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (898)
Q Consensus 245 evvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL 324 (898)
|+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCc
Q 002630 325 KLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 404 (898)
Q Consensus 325 ~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~ 404 (898)
+.++|+++ .+++++|. ++.+| +|++|.|+++++||||+|||+||+|++|+|++||+|+.+.+..
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~---~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~----------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV---ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK----------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC---CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc-----------
Confidence 99999865 67777786 34454 7999999999999999999999999999999999999864321
Q ss_pred cCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHH
Q 002630 405 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYL 484 (898)
Q Consensus 405 ~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l 484 (898)
.|++ -+|++||||||||||+|||+.|| .++|+|+++|+|++ ||++|+|||++|++||
T Consensus 278 ---------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~ 334 (412)
T cd01584 278 ---------------NGWP-----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRATI 334 (412)
T ss_pred ---------------cCCc-----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHH
Confidence 1222 15789999999999999966665 55699999999998 8999999999999999
Q ss_pred HHcCcHHHHHhcCcEEeccCcccccCCCCC-CchHHHhhhccCceEEEEeeccCCCCCCCC-CCcCCceeecCHHHHHHH
Q 002630 485 QNSGLQKYLNHLGFHIVGYGCTTCIGNSGD-IDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAY 562 (898)
Q Consensus 485 ~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~-l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~VaA~ 562 (898)
+++||+++|.++||.|.+||||+|+|++++ ..+ +++.. ++|||+||||+||| |.....+|||||++||||
T Consensus 335 ~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~~-------~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAs 406 (412)
T cd01584 335 ERDGLLQTFRDAGGIVLANACGPCIGQWDRKDIK-------KGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAM 406 (412)
T ss_pred HHCCcHHHHHHcCCEEcCCcccccccCCCCcccC-------CCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHH
Confidence 999999999999999999999999999975 222 23321 47899999999999 444567999999999999
Q ss_pred HHcccc
Q 002630 563 ALAGSV 568 (898)
Q Consensus 563 AlaG~i 568 (898)
||+|++
T Consensus 407 Ai~G~~ 412 (412)
T cd01584 407 AIAGTL 412 (412)
T ss_pred HhcccC
Confidence 999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=8.3e-115 Score=963.76 Aligned_cols=380 Identities=28% Similarity=0.425 Sum_probs=342.4
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002630 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (898)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (898)
|+|+||+|+++++. +||+ +|.+ ..+||+ ++++++||++|++ +....|+.+++.+|.++|.
T Consensus 1 ~~~~hD~t~p~a~~---~~~~----~g~~-~v~dp~-k~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFE---GLRE----AGRE-KVWDPE-KIVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHH---HHHH----hCCc-ccCCCC-ceEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhC------
Confidence 68999999999974 4444 3332 234444 3589999999998 3445666777777777654
Q ss_pred cccccceeeCC-CCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeec
Q 002630 166 NAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (898)
Q Consensus 166 ~~f~~~~~~pp-g~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~v 243 (898)
++++++ |+|||||+++| +|++.| +++|||||||||+||||+||||||++|++++|+||++|+++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 234556 89999999999 788899 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHH
Q 002630 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (898)
Q Consensus 244 PevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~Y 323 (898)
||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+||||++||+++|||||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCC
Q 002630 324 LKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKG 403 (898)
Q Consensus 324 L~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~ 403 (898)
|+.++|+... .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+.
T Consensus 207 L~~~~~~~~~------------~~--~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~------------- 259 (382)
T cd01583 207 LKGRGKAYWK------------EL--KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI------------- 259 (382)
T ss_pred HHhcCccchh------------hc--CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-------------
Confidence 9999886311 23 58999999999999999999999999999999999998731
Q ss_pred ccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHH
Q 002630 404 FAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKY 483 (898)
Q Consensus 404 ~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~ 483 (898)
+|++||||||||||+|||++||++| ||+||+|+||++|+|||++|+++
T Consensus 260 --------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~ 307 (382)
T cd01583 260 --------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQ 307 (382)
T ss_pred --------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHH
Confidence 3679999999999999999999999 99999999999999999999999
Q ss_pred HHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHH
Q 002630 484 LQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYA 563 (898)
Q Consensus 484 l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~A 563 (898)
|+++|++++|.++||.|.+|||++|+|+++++.. +||+ +|||+||||+||||+..+.+|||||++|||||
T Consensus 308 ~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsA 377 (382)
T cd01583 308 AEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVLA-------PGER---CVSTSNRNFKGRMGSPGARIYLASPATAAASA 377 (382)
T ss_pred HHHCCcHHHHHHCCCEEeCCCcccccCCCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHH
Confidence 9999999999999999999999999999887643 4675 78999999999999988899999999999999
Q ss_pred Hcccc
Q 002630 564 LAGSV 568 (898)
Q Consensus 564 laG~i 568 (898)
|+|+|
T Consensus 378 i~G~i 382 (382)
T cd01583 378 ITGEI 382 (382)
T ss_pred hcccC
Confidence 99986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=2.7e-114 Score=965.29 Aligned_cols=405 Identities=28% Similarity=0.414 Sum_probs=363.2
Q ss_pred HHHHHHHhhhcCC--CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 002630 62 KDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (898)
Q Consensus 62 ~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (898)
|++||||+.|.+. .+++.|.+++|++++||.|+++++..|. ++|. +..++|+. +.+++||++|+...
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~-~~v~~P~~-v~~~~DH~~p~~~~-- 69 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGI-DKVFDPER-IVIVVDHVVPASTI-- 69 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCC-CcCCCCCc-EEEEcCCCCCCCCh--
Confidence 4789999999764 3566788999999999999999987664 4454 34667753 78899999998864
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcccCc
Q 002630 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (898)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (898)
..+..++..++|.|. + ++. |++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 70 ~~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 70 KAAEMQKLAREFVKK--------T------GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred hHHHHHHHHHHHHHH--------c------CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 344456666666662 2 344 789999999999999 899999 689999999999999
Q ss_pred ccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhh
Q 002630 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (898)
Q Consensus 218 lG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R 297 (898)
||+||||||++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCC
Q 002630 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKR 377 (898)
Q Consensus 298 ~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~ 377 (898)
||||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|++
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~--~~D~da~Y~~~i~iDls~leP~va~P~~ 272 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY--KSDEDAEYAKEVEIDASQLEPVVAAPHN 272 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc--CCCCCCCEEEEEEEEcccceeeEecCCC
Confidence 999999999999999999999999999998765321 23 5899999999999999999999999999
Q ss_pred CCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHH
Q 002630 378 PHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKK 457 (898)
Q Consensus 378 P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~ 457 (898)
|+|++||+|+.+. +|+|||||||||||++||++||++|
T Consensus 273 Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~il--- 310 (412)
T TIGR01343 273 VDNVHPVSEVEGI---------------------------------------EVDQVFIGSCTNGRIEDLRVAAKIL--- 310 (412)
T ss_pred CCcEEEhHHhCCC---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH---
Confidence 9999999997631 3679999999999999999999999
Q ss_pred HHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccC
Q 002630 458 ACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGN 537 (898)
Q Consensus 458 A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~N 537 (898)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.+.+. +|++ +|||+|
T Consensus 311 ---~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l~-------~ge~---~vsT~N 377 (412)
T TIGR01343 311 ---KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVLA-------PGEV---CISTSN 377 (412)
T ss_pred ---cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEecC
Confidence 999999999999999999999999999999999999999999999999999755433 3564 789999
Q ss_pred CCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 538 RNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 538 RNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
|||+||||+..+.+|||||++||||||+|+|+
T Consensus 378 RNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 378 RNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred CCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 99999999888889999999999999999994
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=9.2e-114 Score=962.52 Aligned_cols=407 Identities=30% Similarity=0.451 Sum_probs=363.3
Q ss_pred cHHHHHHHHhhhcCC--CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002630 60 KSKDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (898)
Q Consensus 60 ~~~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~ 137 (898)
.+|++||||+.|.+. .+++.|.+++|++++||.|+++++..|.+ +|.+ ..++|. .+.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-------~g~~-~v~~P~-~~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEK-------IGGD-KVFDPS-KIVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCCC-ccCCCC-cEEEECCCCCCCCCh
Confidence 478999999999764 25667889999999999999999876643 3543 356776 378899999999853
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 002630 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (898)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~-~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (898)
..+..++..++|.|. + +++ |+++|+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAKE--------Q------GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHHH--------c------CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 334455666666552 2 354 688999999999999 789999 5899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChh
Q 002630 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (898)
Q Consensus 216 galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 295 (898)
||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCC
Q 002630 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGP 375 (898)
Q Consensus 296 ~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P 375 (898)
+|||||||++|+||++||||+|++|++||+.+++.+. ..+ .+|++|.|+++++||||+|||+||+|
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~------------~~l--~~D~~a~Y~~~i~iDls~leP~va~P 273 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY------------KPW--KSDEDAEYEEVYEIDLSKLEPQVAAP 273 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhccccc------------ccc--cCCCCCCEEEEEEEEcccceeeeecC
Confidence 9999999999999999999999999999999854321 122 57999999999999999999999999
Q ss_pred CCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHH
Q 002630 376 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 455 (898)
Q Consensus 376 ~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 455 (898)
++|+|++|++|+++. +|++||||||||||+|||++||++|
T Consensus 274 ~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~eDl~~aA~il- 313 (418)
T PRK00402 274 HLPDNVKPVSEVEGT---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEIL- 313 (418)
T ss_pred CCccceeEchhhCCc---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 999999999997631 3679999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeec
Q 002630 456 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 535 (898)
Q Consensus 456 ~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 535 (898)
||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++.+.++ +|++ +|||
T Consensus 314 -----~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT 378 (418)
T PRK00402 314 -----KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA-------PGEV---CLST 378 (418)
T ss_pred -----cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEe
Confidence 999999999999999999999999999999999999999999999999998655433 3564 7899
Q ss_pred cCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 536 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 536 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 379 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 379 TNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred cCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 9999999999888889999999999999999994
No 24
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=9.9e-114 Score=960.79 Aligned_cols=405 Identities=27% Similarity=0.404 Sum_probs=364.5
Q ss_pred HHHHHHHHhhhcCC--CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 002630 61 SKDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (898)
Q Consensus 61 ~~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~ 138 (898)
+|++||||+.|.+. ..+..|.+++|++++||.|+++++..|. ++| ...++|.. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 47899999999764 3566799999999999999999987664 345 45677774 788999999998643
Q ss_pred cHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcccCc
Q 002630 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (898)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ga 217 (898)
.+..++..++|.+. +|+++++||+|||||+++| .|++.| +++||+||||||+||
T Consensus 71 --~a~~~~~~r~fa~~--------------~gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAKE--------------HGIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHHH--------------cCCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 33344445555441 2467789999999999999 899999 579999999999999
Q ss_pred ccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhh
Q 002630 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (898)
Q Consensus 218 lG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R 297 (898)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCC
Q 002630 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKR 377 (898)
Q Consensus 298 ~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~ 377 (898)
||||||++|+||++||||+|++|++||+.++|.+. ..| .+|++|.|+++++||||+|||+||+|++
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~------------~~~--~~D~~a~Y~~~i~iDls~leP~va~P~~ 271 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEF------------RIL--RPDPGAKYDDEIEIDLSDLEPLVAVPHS 271 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCccc------------ccc--cCCCCCCEEEEEEEEccceeEEecCCCC
Confidence 99999999999999999999999999999988642 123 5899999999999999999999999999
Q ss_pred CCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHH
Q 002630 378 PHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKK 457 (898)
Q Consensus 378 P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~ 457 (898)
|+|++|++++.+. +|++||||||||||++||++||++|
T Consensus 272 P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL--- 309 (412)
T TIGR02086 272 VDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL--- 309 (412)
T ss_pred hHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH---
Confidence 9999999998631 3679999999999999999999999
Q ss_pred HHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccC
Q 002630 458 ACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGN 537 (898)
Q Consensus 458 A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~N 537 (898)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++.+++. +|++ +|||+|
T Consensus 310 ---kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~vsT~N 376 (412)
T TIGR02086 310 ---EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLG-------DGEV---CVSTTN 376 (412)
T ss_pred ---cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEecC
Confidence 999999999999999999999999999999999999999999999999999866543 4665 789999
Q ss_pred CCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 538 RNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 538 RNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
|||+||||+..+.+|||||++||||||+|+|+
T Consensus 377 RNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 377 RNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred CCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 99999999888889999999999999999994
No 25
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.5e-113 Score=950.97 Aligned_cols=379 Identities=36% Similarity=0.558 Sum_probs=347.3
Q ss_pred ceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhc
Q 002630 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (898)
Q Consensus 85 drvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~ 164 (898)
|++|+||.|+++++..|. ++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999987663 45664 345553 7889999999864 2667888999999
Q ss_pred ccccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeec
Q 002630 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (898)
Q Consensus 165 ~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~v 243 (898)
.++| ++++++||+|||||+++|+ ++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 8888 7999999999999999994 4556 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHH
Q 002630 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (898)
Q Consensus 244 PevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~Y 323 (898)
||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCC
Q 002630 324 LKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKG 403 (898)
Q Consensus 324 L~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~ 403 (898)
|+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+.
T Consensus 205 l~~~gr~~~~~-----------~l--~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~------------- 258 (380)
T cd01585 205 LAAQGREDDWV-----------EL--AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAGI------------- 258 (380)
T ss_pred HHhcCCchhcc-----------cc--CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCCc-------------
Confidence 99999865431 12 57999999999999999999999999999999999997631
Q ss_pred ccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHH
Q 002630 404 FAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKY 483 (898)
Q Consensus 404 ~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~ 483 (898)
+|++||||||||+|+|||++||++| ||+||+||||++|+|||++|+++
T Consensus 259 --------------------------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~ 306 (380)
T cd01585 259 --------------------------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEM 306 (380)
T ss_pred --------------------------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHH
Confidence 3789999999999999999999999 99999999999999999999999
Q ss_pred HHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHH
Q 002630 484 LQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYA 563 (898)
Q Consensus 484 l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~A 563 (898)
|+++|++++|+++||.|.+|||++|+|+++.+ + +|++ +|||+||||+||||+..+.+|||||++|||||
T Consensus 307 a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~-~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsA 375 (380)
T cd01585 307 LARNGALADLLAAGARILESACGPCIGMGQAP-P-------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAAAA 375 (380)
T ss_pred HHHCCcHHHHHHcCCEEeCCCceeccCCCCCC-C-------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHHHH
Confidence 99999999999999999999999999997663 2 3564 78999999999999888889999999999999
Q ss_pred Hcccc
Q 002630 564 LAGSV 568 (898)
Q Consensus 564 laG~i 568 (898)
|+|+|
T Consensus 376 i~G~i 380 (380)
T cd01585 376 LTGVI 380 (380)
T ss_pred hCccC
Confidence 99986
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=6.3e-113 Score=953.62 Aligned_cols=409 Identities=31% Similarity=0.450 Sum_probs=362.6
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002630 61 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (898)
Q Consensus 61 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~ 137 (898)
+|++|||++.|.+.. .+..|.+++|++|+||.|+++++..|. ++|. +..+||+ .+.+++||++|+..
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~-~v~~~~DH~vpa~~- 70 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPD-RVALVPDHFTPNKD- 70 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCC-CEEEEeCCCCCCCC-
Confidence 478999999997633 566789999999999999999987654 4554 3466776 47889999999985
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCC-cceeeeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 002630 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (898)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~-GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (898)
...+..++..++|.|. +++++ |+++|+ |||||+++| +|++.| +++|||||||||+
T Consensus 71 -~~~a~~~~~~r~fa~~--------~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 71 -IKSAEQCKMMREFARE--------QGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred -HHHHHHHHHHHHHHHH--------cCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 3445566667777763 33332 577885 999999999 899999 5799999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChh
Q 002630 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (898)
Q Consensus 216 galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 295 (898)
||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCC
Q 002630 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGP 375 (898)
Q Consensus 296 ~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P 375 (898)
+|||||||++|+||++||||+|++|++||+.+++++. + .+ .+|++|.|+++++||||+|||+||+|
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~~--~----------~~--~~D~dA~Y~~~~~iDls~leP~va~P 273 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKREE--K----------IY--KADEDAKYVRVIEIDLSELEPQVAFP 273 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccch--h----------cc--cCCCCCCEEEEEEEEccccceeecCC
Confidence 9999999999999999999999999999997654421 1 23 58999999999999999999999999
Q ss_pred CCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHH
Q 002630 376 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 455 (898)
Q Consensus 376 ~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 455 (898)
++|+|++|++|+... |. +|++||||||||||++||++||++|
T Consensus 274 ~~pdnv~~v~e~~~~------------------------------g~-------~id~v~IGSCTngr~eDl~~AA~iL- 315 (419)
T TIGR02083 274 HLPENTKDISEAGKE------------------------------EI-------KIDQVVIGSCTNGRLEDLRLAAEIL- 315 (419)
T ss_pred CCcccCcChhhcccc------------------------------cC-------ccCeEEEEcCCCCChHHHHHHHHHH-
Confidence 999999999998620 11 4679999999999999999999999
Q ss_pred HHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeec
Q 002630 456 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 535 (898)
Q Consensus 456 ~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS 535 (898)
||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.+.+.+ |++ +|||
T Consensus 316 -----kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~~-------ge~---~vsT 380 (419)
T TIGR02083 316 -----KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILAE-------GER---AIST 380 (419)
T ss_pred -----cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCCC-------CCE---EEEe
Confidence 9999999999999999999999999999999999999999999999999988554433 564 7899
Q ss_pred cCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 536 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 536 ~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
+||||+||||+....+|||||++||||||+|+|+
T Consensus 381 ~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 381 TNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred cCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 9999999999666789999999999999999994
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-111 Score=912.27 Aligned_cols=409 Identities=30% Similarity=0.456 Sum_probs=360.1
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 002630 61 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (898)
Q Consensus 61 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~ 137 (898)
+|+.|||++.|.... .++.+..++|++|.||.|+|.++.-| +++|. +.++|+. +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 789999999997643 23457789999999999999997533 35564 4566664 67899999999864
Q ss_pred ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CcceeeeeccccceeeecCCCcccC-CeEeecCCCCccc
Q 002630 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (898)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg-~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (898)
. .+.+ .+++.+|.++| ++ ++|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~--~a~~---~~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 K--AAEQ---QKELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred H--HHHH---HHHHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 3 2334 44455555433 23 3457778 9999999999 999999 5899999999999
Q ss_pred CcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChh
Q 002630 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (898)
Q Consensus 216 galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~ 295 (898)
||||+||+|+|++|+|++|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccc-cCCCCCeeeEEEEEEcCCcccCccC
Q 002630 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVD-YSESERVYSSYLELNLEEVVPCVSG 374 (898)
Q Consensus 296 ~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~-~~d~~a~Y~~~ieiDLs~veP~vA~ 374 (898)
+|||||||++|+||++|+|+||++|++||+.... +...|+. .+|+||.|+++++||+|+|+|+|||
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~~-------------a~~~~~~l~sD~dA~y~~~v~~d~s~leP~Va~ 275 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWDG-------------AVAYWKTLKSDEDAVYDKVVELDASDLEPQVAW 275 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHhc-------------cccccceecCCCCCceeEEEEEEcccCCceeeC
Confidence 9999999999999999999999999999993221 1123433 7899999999999999999999999
Q ss_pred CCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHH
Q 002630 375 PKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALV 454 (898)
Q Consensus 375 P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lL 454 (898)
|++|+|+++++|+.++. + +|+++|||||||||++||++||++|
T Consensus 276 p~~p~nv~~v~e~~~~~--------------i-----------------------~iDqVFIGSCTNgRieDLr~AA~Il 318 (423)
T COG0065 276 PTNPDNVVPVSEVEPDP--------------I-----------------------KIDQVFIGSCTNGRIEDLRAAAEIL 318 (423)
T ss_pred CCCcccceecccccCCc--------------e-----------------------eeceEEEeccCCccHHHHHHHHHHh
Confidence 99999999999987420 1 4679999999999999999999999
Q ss_pred HHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEee
Q 002630 455 AKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVL 534 (898)
Q Consensus 455 a~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vs 534 (898)
||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|+|.+++++ ||+ |+|
T Consensus 319 ------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~-------gE~---c~S 382 (423)
T COG0065 319 ------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGP-------GER---CAS 382 (423)
T ss_pred ------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCCC-------CCE---Eee
Confidence 8999999999999999999999999999999999999999999999999999777655 554 689
Q ss_pred ccCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 535 SGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 535 S~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
|+||||+||||+..+.+||+||+++||+|++|+|.
T Consensus 383 TSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 383 TSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred ccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 99999999999777788999999999999999994
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=6.5e-105 Score=892.96 Aligned_cols=403 Identities=23% Similarity=0.321 Sum_probs=350.5
Q ss_pred HHHHHHhhhcCC---CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 002630 63 DVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (898)
Q Consensus 63 ~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~ 139 (898)
++||||+++.+. .+|..|.+++|++++||.||++++..|.. +|. +++||+ .+.+++||++|+...
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-------~~~--~v~d~~-~~v~~~DH~~p~~~~-- 68 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-------LAC--LGFSAD-LVMQSFCHTAAYPKP-- 68 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-------cCC--cccCCc-cEEEEcCCCCCCCCH--
Confidence 379999999764 25677999999999999999999877653 343 356776 368899999999854
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCCCcccCcc
Q 002630 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGL 218 (898)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~gal 218 (898)
..+..++..++|.++. +++|++||+|||||++.| +++|+ ++|||||||||+||
T Consensus 69 ~~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga- 122 (436)
T cd01581 69 VDVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG- 122 (436)
T ss_pred HHHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc-
Confidence 3445677777777742 356799999999999887 35786 57999999999986
Q ss_pred cceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHH----H--------HHHcCccceEEEEec
Q 002630 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ----M--------LRKHGVVGMFVEFYG 286 (898)
Q Consensus 219 G~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~----~--------L~~~G~~gk~vEf~G 286 (898)
||||+|++|++.+|+++++||++||+|+|+|+|+|++||+||||||+|+. . ++.+|++||+|||.
T Consensus 123 --~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~- 199 (436)
T cd01581 123 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE- 199 (436)
T ss_pred --eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC-
Confidence 89999999999999999999999999999999999999999999998654 3 33345689999996
Q ss_pred CCccccChhhhhhhhccCcccccccccccCCHHH-HHHHhhc----------CCCh-----hhHHHHHHHHHhccccccc
Q 002630 287 EGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----DTVSMIESYLRANKMFVDY 350 (898)
Q Consensus 287 ~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t-~~YL~~~----------gr~~-----~~~~~~~~y~~~~~l~~~~ 350 (898)
|+++||+++|||||||++|+|||+||||+|++| ++||+.+ ||++ .+.++++.|.+.+.+| .
T Consensus 200 -Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~ 276 (436)
T cd01581 200 -GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL--E 276 (436)
T ss_pred -CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc--c
Confidence 599999999999999999999999999999988 8999997 5542 3445778888888888 6
Q ss_pred CCCCCeeeEEEEEEcCCc-ccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCC
Q 002630 351 SESERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHG 429 (898)
Q Consensus 351 ~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g 429 (898)
+|++|.|+++++||||+| ||+||+|++|+|++|++|+.+.
T Consensus 277 ~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~--------------------------------------- 317 (436)
T cd01581 277 PDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK--------------------------------------- 317 (436)
T ss_pred CCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC---------------------------------------
Confidence 899999999999999999 9999999999999999997631
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCccccc
Q 002630 430 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCI 509 (898)
Q Consensus 430 ~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~Ci 509 (898)
+|+++||||||| |++|++.||.+| ||+|++ .||++|+|||++|+++|+++|++++|.++||.|.+||||+|+
T Consensus 318 ~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C~ 389 (436)
T cd01581 318 KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCM 389 (436)
T ss_pred ccceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCcccccc
Confidence 356899999999 999999999999 999975 599999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHcccc
Q 002630 510 GNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 568 (898)
Q Consensus 510 G~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 568 (898)
|+.+.+ .+|++ +|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 390 G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 390 GNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred CcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 985543 35776 789999999999999 668899999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=5.2e-104 Score=868.51 Aligned_cols=361 Identities=30% Similarity=0.480 Sum_probs=318.6
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002630 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (898)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (898)
.+++||.|+++++. |. ++|. ++.++|+ .+.+++||++|+.... .+..++..++|.|
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~-~~~~~~DH~vp~~~~~--~~~~~~~lr~~ak------------ 56 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPD-QIVMTLDHDVQNKSEK--NLKKYKNIESFAK------------ 56 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCC-CEEEEcCCCCCCCCHH--HHHHHHHHHHHHH------------
Confidence 37999999998764 43 3454 4567776 3788999999998542 3344445555444
Q ss_pred cccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecC
Q 002630 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (898)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vP 244 (898)
++ +++|+|||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 57 -~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 57 -KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred -Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 22 578899999999999999 8999997 57999999999999999999999999999999988999999
Q ss_pred cEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHHH
Q 002630 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (898)
Q Consensus 245 evvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL 324 (898)
|+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCc
Q 002630 325 KLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 404 (898)
Q Consensus 325 ~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~ 404 (898)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 ---------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~-------------- 231 (363)
T cd01582 199 ---------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ-------------- 231 (363)
T ss_pred ---------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc--------------
Confidence 457999999999999999999999999997420
Q ss_pred cCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCC-CccCCceeEEEEcCCHHHHHH
Q 002630 405 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVTKY 483 (898)
Q Consensus 405 ~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G-~kv~p~Vk~~v~PgS~~V~~~ 483 (898)
+ -+|++||||||||||++||+.||++|.++..++| ++|+||||++|+|||++|+++
T Consensus 232 ----------------~-------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~ 288 (363)
T cd01582 232 ----------------N-------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAA 288 (363)
T ss_pred ----------------C-------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHH
Confidence 0 0467999999999999999999999943332222 339999999999999999999
Q ss_pred HHHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHH
Q 002630 484 LQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYA 563 (898)
Q Consensus 484 l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~A 563 (898)
|+++||+++|.++||.|.+|||++|+|+++++.++ +|+ +|||+||||+||||+..+.+|||||++|||||
T Consensus 289 a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsA 358 (363)
T cd01582 289 AEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAASA 358 (363)
T ss_pred HHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHH
Confidence 99999999999999999999999999999887544 665 68999999999999888899999999999999
Q ss_pred Hcccc
Q 002630 564 LAGSV 568 (898)
Q Consensus 564 laG~i 568 (898)
|+|+|
T Consensus 359 i~G~i 363 (363)
T cd01582 359 ISGKI 363 (363)
T ss_pred hCccC
Confidence 99986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=2.6e-99 Score=846.32 Aligned_cols=388 Identities=38% Similarity=0.605 Sum_probs=351.0
Q ss_pred eeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccccHHHHHhhhHHHHHHhhhhhhhhhhcc
Q 002630 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (898)
Q Consensus 86 rvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (898)
||++||+||++++.+|+.| |.+...++| .++.+++||++|+.. .+|.++|+|++|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p-~~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADP-SQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCc-ccEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 7999999999999887644 432134455 478999999999963 26677788888888
Q ss_pred cccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcccCcccceeecCCHHHHHHHHcCCcEEeecC
Q 002630 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (898)
Q Consensus 166 ~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~galG~lg~GVGg~ea~~am~g~~~~~~vP 244 (898)
++|. +++++||+|||||+++|++ +.| ++++|+||||||+||||++|||+|++|++++|+|+++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 7774 8999999999999999943 456 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccChhhhhhhhccCcccccccccccCCHHHHHHH
Q 002630 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (898)
Q Consensus 245 evvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL 324 (898)
++++|+|+|+|++||++||++|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhHHHHHHHHHhcccccccCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCc
Q 002630 325 KLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGF 404 (898)
Q Consensus 325 ~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~ 404 (898)
+.++|++... .++.|.+ .+ .+|++|.|+++++||||+|+|+||+|++|+|++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~---~l--~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~--------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPE---EL--LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHh---cc--CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC---------------
Confidence 9999987543 3343333 23 5899999999999999999999999999999999999752
Q ss_pred cCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHH
Q 002630 405 AIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYL 484 (898)
Q Consensus 405 ~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l 484 (898)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++++
T Consensus 266 ------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a 315 (389)
T cd01351 266 ------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATL 315 (389)
T ss_pred ------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHH
Confidence 14789999999999999999999999 999999999999999999999999
Q ss_pred HHcCcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHH
Q 002630 485 QNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYAL 564 (898)
Q Consensus 485 ~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~Al 564 (898)
+++|++++|+++||.|..+||++|+|++++++.+ |++ +|||+||||+||||+..+.+|||||++||||||
T Consensus 316 ~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl 385 (389)
T cd01351 316 SREGYYEILVDSGARILPPGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAATAI 385 (389)
T ss_pred HHcChHHHHHHCCCEEeCCCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHHHh
Confidence 9999999999999999999999999999887544 554 689999999999999888899999999999999
Q ss_pred cccc
Q 002630 565 AGSV 568 (898)
Q Consensus 565 aG~i 568 (898)
+|+|
T Consensus 386 ~G~i 389 (389)
T cd01351 386 AGKI 389 (389)
T ss_pred cCcC
Confidence 9986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=2.1e-97 Score=873.51 Aligned_cols=409 Identities=22% Similarity=0.312 Sum_probs=357.8
Q ss_pred CcHHHHHHHHhhhcCC---CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcC
Q 002630 59 VKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (898)
Q Consensus 59 ~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~ 135 (898)
.++|++|||++++++. .+|..|..++|.|++||.||++++..| +++|. ..++|+. |.+++||.+|..
T Consensus 369 ~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~~ 438 (835)
T PRK09238 369 KGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAYP 438 (835)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCCC
Confidence 4589999999999764 357789999999999999999997654 45564 3555553 678999999987
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCCe-EeecCCCCcc
Q 002630 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 214 (898)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 214 (898)
. ..++..++..++|.+++ ++.+++||+|||||++ +|+++||+ ++||||||||
T Consensus 439 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~t 491 (835)
T PRK09238 439 K--PVDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 491 (835)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccCC
Confidence 4 34556777777777742 3446889999999996 35889986 5999999999
Q ss_pred cCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHH------------HHcCccceEE
Q 002630 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQML------------RKHGVVGMFV 282 (898)
Q Consensus 215 ~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L------------~~~G~~gk~v 282 (898)
+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+ +.+|++||+|
T Consensus 492 ~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~l 568 (835)
T PRK09238 492 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568 (835)
T ss_pred CCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEE
Confidence 997 7899999999999999999999999999999999999999999999994333 3345789999
Q ss_pred EEecCCccccChhhhhhhhccCccccccccccc-CCHHHHHHHhhc----------CCC-----hhhHHHHHHHHHhccc
Q 002630 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRS-----DDTVSMIESYLRANKM 346 (898)
Q Consensus 283 Ef~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp-~D~~t~~YL~~~----------gr~-----~~~~~~~~~y~~~~~l 346 (898)
||. |+++||+++|||||||++|+||++|+|| +|+.|++||+.+ ||. ..+++.+++|++.+.+
T Consensus 569 Ef~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~l 646 (835)
T PRK09238 569 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPEL 646 (835)
T ss_pred EEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhccc
Confidence 995 6999999999999999999999999999 788889999986 664 2356778999988888
Q ss_pred ccccCCCCCeeeEEEEEEcCCc-ccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCccc
Q 002630 347 FVDYSESERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQ 425 (898)
Q Consensus 347 ~~~~~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 425 (898)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 647 l--~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~----------------------------------- 689 (835)
T PRK09238 647 L--EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT----------------------------------- 689 (835)
T ss_pred c--cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC-----------------------------------
Confidence 8 6899999999999999999 9999999999999999998631
Q ss_pred ccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002630 426 LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 505 (898)
Q Consensus 426 l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 505 (898)
+|++||||||| |+++|++.||.+| ||+++++.||++|+|||++|+++|+++|++++|.++||.|..|||
T Consensus 690 ----~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGC 758 (835)
T PRK09238 690 ----KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMPGC 758 (835)
T ss_pred ----ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCcc
Confidence 35689999999 9999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 506 TTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 506 ~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
++|+||.+.+ .+|++ +|||+||||+||||+ .+.+|||||++||||||+|+|+
T Consensus 759 g~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 759 SLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRIP 810 (835)
T ss_pred hhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCccC
Confidence 9999996553 35775 789999999999997 5678999999999999999993
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=2.6e-96 Score=861.59 Aligned_cols=407 Identities=22% Similarity=0.322 Sum_probs=355.6
Q ss_pred CcHHHHHHHHhhhcCC---CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcC
Q 002630 59 VKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (898)
Q Consensus 59 ~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~ 135 (898)
.++|++|||++++++. .+|..|..++|.|++||.||++++..|. ++|. ..++|+. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~~-------~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDELK-------ELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-------HhCC--ceECCCc-EEEEeCCCCCCC
Confidence 4689999999999774 3577899999999999999999976654 4443 3555543 578999999877
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCCe-EeecCCCCcc
Q 002630 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 214 (898)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 214 (898)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 45566777788887742 345788999999999876 468875 6999999999
Q ss_pred cCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHH------------cCccceEE
Q 002630 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRK------------HGVVGMFV 282 (898)
Q Consensus 215 ~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~------------~G~~gk~v 282 (898)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999644442 45689999
Q ss_pred EEecCCccccChhhhhhhhccCcccccccccccCCHH-HHHHHhhc----------CCCh-----hhHHHHHHHHHhccc
Q 002630 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----DTVSMIESYLRANKM 346 (898)
Q Consensus 283 Ef~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~-t~~YL~~~----------gr~~-----~~~~~~~~y~~~~~l 346 (898)
||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++.+.+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999965 89999995 6654 356788899988888
Q ss_pred ccccCCCCCeeeEEEEEEcCCc-ccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCccc
Q 002630 347 FVDYSESERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQ 425 (898)
Q Consensus 347 ~~~~~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 425 (898)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l--~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~----------------------------------- 690 (844)
T TIGR00117 648 L--EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD----------------------------------- 690 (844)
T ss_pred c--cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc-----------------------------------
Confidence 8 6899999999999999999 9999999999999999998631
Q ss_pred ccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002630 426 LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 505 (898)
Q Consensus 426 l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 505 (898)
.|+++|||||| |+++|++.||.+| ||++++| ||++|+|||++|+++|+++|++++|.++||.|..|||
T Consensus 691 ----~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~pGC 758 (844)
T TIGR00117 691 ----KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGC 758 (844)
T ss_pred ----ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCcc
Confidence 25689999999 7999999999999 9999998 9999999999999999999999999999999999999
Q ss_pred ccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHcccc
Q 002630 506 TTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 568 (898)
Q Consensus 506 ~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i 568 (898)
++|+||.+.+. +|++ +|||+||||+||||+. ..+|||||++||||||+|+|
T Consensus 759 g~C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~~-a~vYLaSP~~aAAsAi~G~I 809 (844)
T TIGR00117 759 SLCMGNQARVA--------DGAT---VFSTSTRNFPNRMGTG-ANVYLGSAELAAVCALLGKI 809 (844)
T ss_pred ccccCCCCcCC--------CCCE---EEeccCCCCCCCCCCC-ccEEeCCHHHHHHHHhCccc
Confidence 99999966643 4664 6899999999999985 57999999999999999999
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=6e-94 Score=838.90 Aligned_cols=409 Identities=22% Similarity=0.316 Sum_probs=354.3
Q ss_pred CcHHHHHHHHhhhcCC----CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCc
Q 002630 59 VKSKDVEKIIDWETTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 134 (898)
Q Consensus 59 ~~~~~ie~il~~~~~~----~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~ 134 (898)
.++|++|||++++++. .+|..|..++|.|++||.||++++..|..|. -++.||++ |.+++||.+|+
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efkel~----~~~~dpdk------v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELKDLA----CLGFSADL------VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHHHhc----ccccCccc------EEEEccCCCCC
Confidence 4689999999999763 3577899999999999999999976654331 13555554 48899999888
Q ss_pred CccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCC-eEeecCCCCc
Q 002630 135 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 213 (898)
Q Consensus 135 ~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~ 213 (898)
... .++..++..++|.+++ ++.+++||+|||||++.| +++|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 5556667777777731 345789999999998754 77886 5899999999
Q ss_pred ccCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHH------HHHHH------cCccceE
Q 002630 214 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVT------QMLRK------HGVVGMF 281 (898)
Q Consensus 214 ~~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~------~~L~~------~G~~gk~ 281 (898)
+..|+ +||.|++|++.+|++|++||+|||+|+|+|+|+|++|||+|||||+|+ +.|+. .+++||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 88775 558899999999999999999999999999999999999999999997 44433 3468999
Q ss_pred EEEecCCccccChhhhhhhhccCcccccccccccCCH-HHHHHHhh----------cCCC-----hhhHHHHHHHHHhcc
Q 002630 282 VEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DDTVSMIESYLRANK 345 (898)
Q Consensus 282 vEf~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~-~t~~YL~~----------~gr~-----~~~~~~~~~y~~~~~ 345 (898)
||| +||++||+++|||||||++|+||++|+||+|+ .|++||+. +|+. +.+++.+++|++.+.
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 4533 345678899999888
Q ss_pred cccccCCCCCeeeEEEEEEcCCc-ccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcc
Q 002630 346 MFVDYSESERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA 424 (898)
Q Consensus 346 l~~~~~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 424 (898)
+| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 720 ll--~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~---------------------------------- 763 (938)
T PLN00094 720 LL--EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGD---------------------------------- 763 (938)
T ss_pred cc--cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcCC----------------------------------
Confidence 88 7899999999999999999 9999999999999999997631
Q ss_pred cccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 002630 425 QLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYG 504 (898)
Q Consensus 425 ~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~G 504 (898)
+|++||||||| |+++|++.||.+| +|+|+++.||++|+|||++|+++|+++|++++|.++||.|..||
T Consensus 764 -----kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PG 831 (938)
T PLN00094 764 -----KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEMPG 831 (938)
T ss_pred -----ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCc
Confidence 35689999999 7999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHccccc
Q 002630 505 CTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 569 (898)
Q Consensus 505 C~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~ 569 (898)
||+|+||++.+. +|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|+
T Consensus 832 Cg~CmG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~It 884 (938)
T PLN00094 832 CSLCMGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRLP 884 (938)
T ss_pred cccccCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCccC
Confidence 999999966642 4664 789999999999998 5689999999999999999993
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=2.4e-68 Score=524.23 Aligned_cols=170 Identities=76% Similarity=1.160 Sum_probs=167.5
Q ss_pred ecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 002630 672 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 751 (898)
Q Consensus 672 ~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~ 751 (898)
+|||+||||||||||+|+++||||+||.++|+.++|||||||||||||||+||||+|+|++|+|++|.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhcc
Q 002630 752 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 831 (898)
Q Consensus 752 ~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~ 831 (898)
.++|||+|++|+++|+|+|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 002630 832 LTGHERYTID 841 (898)
Q Consensus 832 l~g~e~~~Id 841 (898)
|+|.|.|+|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999998875
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=7.2e-49 Score=438.76 Aligned_cols=417 Identities=24% Similarity=0.347 Sum_probs=333.8
Q ss_pred cHHHHHHHHhhhcCC---CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCc
Q 002630 60 KSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDV 136 (898)
Q Consensus 60 ~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~~ 136 (898)
+-|.++|++.++++. .+|.++..+..-|-.||.||+|.-..|..| +-+|++ +|+++..+.....
T Consensus 372 G~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfs---------aD~vmQSfCHTAa 438 (852)
T COG1049 372 GFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFS---------ADLVMQSFCHTAA 438 (852)
T ss_pred cccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhccc---------chhhhhhcccccc
Confidence 457899999998764 357788889999999999999985444322 234554 3566655544332
Q ss_pred c-ccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccCCeE-eecCCCCcc
Q 002630 137 A-RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTM 214 (898)
Q Consensus 137 ~-~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pdtv-vGtDSHT~~ 214 (898)
+ ...+-..+...-.|-.| +.++. ..||.||+|.+. +.++.|||+ .|+||||.+
T Consensus 439 ypkpvdv~th~~Lp~Fi~~-------------rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRf 493 (852)
T COG1049 439 YPKPVDVKTHHTLPDFIMN-------------RGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 493 (852)
T ss_pred cCCccchhccccchHHHhh-------------cCcee-cCCCCccHHHHH-----------HhccCCcceecCCcccccc
Confidence 2 22222223333344443 22333 458899999986 568999985 899999999
Q ss_pred cCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHH------HH--H----cCccceEE
Q 002630 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQM------LR--K----HGVVGMFV 282 (898)
Q Consensus 215 ~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~------L~--~----~G~~gk~v 282 (898)
.=|+ +|+.|+-=++.+.+++.+.|.+||+|.|+++|+++||+|-+|||.+|--. |. + +-..|+++
T Consensus 494 piGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIl 570 (852)
T COG1049 494 PIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 570 (852)
T ss_pred cccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeE
Confidence 8765 67778888888999999999999999999999999999999999887422 22 1 12569999
Q ss_pred EEecCCccccChhhhhhhhccCcccccccccccCCHH-HHHHHhhc----------CCCh-----hhHHHHHHHHHhccc
Q 002630 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----DTVSMIESYLRANKM 346 (898)
Q Consensus 283 Ef~G~gv~~LS~~~R~TIaNMa~E~GAt~~~fp~D~~-t~~YL~~~----------gr~~-----~~~~~~~~y~~~~~l 346 (898)
|. +|+.+|.+++-++++..++|..|..+.+-.+++ .++||+.. |..+ ..++.+|+|+....+
T Consensus 571 Ei--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~l 648 (852)
T COG1049 571 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPEL 648 (852)
T ss_pred Ee--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCccc
Confidence 99 679999999999999999999999998877555 56899763 4332 347788999988888
Q ss_pred ccccCCCCCeeeEEEEEEcCCc-ccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCccc
Q 002630 347 FVDYSESERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQ 425 (898)
Q Consensus 347 ~~~~~d~~a~Y~~~ieiDLs~v-eP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 425 (898)
. .+|.+|+|..+|+|||..| ||++|+|.+||++..++++..+
T Consensus 649 l--e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~----------------------------------- 691 (852)
T COG1049 649 L--EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD----------------------------------- 691 (852)
T ss_pred c--CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC-----------------------------------
Confidence 8 7899999999999999999 8999999999999999987631
Q ss_pred ccCCceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002630 426 LRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 505 (898)
Q Consensus 426 l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 505 (898)
.|+-+|||||.. .+-+++++|.+| +|.+=.-..|++|+|-++...++|.++|++.+|-++|+++.-|||
T Consensus 692 ----~idevFiGSCMt-niGh~ra~~klL------~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGC 760 (852)
T COG1049 692 ----KIDEVFIGSCMT-NIGHFRAAGKLL------ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGC 760 (852)
T ss_pred ----ccceeeeehhhc-cchhHHHHHHHH------HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCCc
Confidence 256789999975 367899999999 555422237899999999999999999999999999999999999
Q ss_pred ccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHcccccccCCCCCcccCCCCce
Q 002630 506 TTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKK 585 (898)
Q Consensus 506 ~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~ 585 (898)
+.|+||.... ++|.. .+||++|||++|+|... .+||+|.+++|.+||-|+|
T Consensus 761 sLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki----------------- 811 (852)
T COG1049 761 SLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI----------------- 811 (852)
T ss_pred ccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC-----------------
Confidence 9999996553 45665 47899999999999875 5899999999999999998
Q ss_pred eecccCCCChHHHHHHhh
Q 002630 586 IFLRDIWPSSEEVAHVVQ 603 (898)
Q Consensus 586 v~l~diwP~~~ei~~~~~ 603 (898)
|+.+|..+++.
T Consensus 812 -------Pt~eEY~~~v~ 822 (852)
T COG1049 812 -------PTVEEYMAYVA 822 (852)
T ss_pred -------CCHHHHHHHHH
Confidence 89999888776
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=381.58 Aligned_cols=398 Identities=24% Similarity=0.288 Sum_probs=261.1
Q ss_pred Hhcccccc-cCCCCCeeeEEEEEEcCCcccCccCCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccC
Q 002630 342 RANKMFVD-YSESERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFH 420 (898)
Q Consensus 342 ~~~~l~~~-~~d~~a~Y~~~ieiDLs~veP~vA~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (898)
++..+|.+ .+|+.+.|+..++|..-.+.|.+.|..+||++.|+..-.++.....+ +| -...-+..+.|+
T Consensus 16 ~avaywktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd--------~i--~a~~~ersL~ym 85 (502)
T KOG0454|consen 16 SAVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD--------KI--LARASERSLVYM 85 (502)
T ss_pred hhhhhhhcccCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch--------HH--HHhhhhhceeec
Confidence 34456655 68999999999999999999999999999999999875543221100 00 001123456677
Q ss_pred CCcccccCC--ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCcee-EEEEcCCHHHHHHHHHcCcHHHHHhcC
Q 002630 421 GTPAQLRHG--DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKYLNHLG 497 (898)
Q Consensus 421 g~~~~l~~g--~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk-~~v~PgS~~V~~~l~~~Gl~~~l~~aG 497 (898)
|.+...... .++-+|||||||.+.+||+.||+++ +|.|+.-.+| .+++|||+.|.+.++.+||.++|.++|
T Consensus 86 Gl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~eag 159 (502)
T KOG0454|consen 86 GLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEAG 159 (502)
T ss_pred cCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHhhc
Confidence 765433332 4567999999999999999999999 9999998887 789999999999999999999999999
Q ss_pred cEEeccCcccccCCCCCCchHHHhhhccCceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHcccccccCCCCCc
Q 002630 498 FHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPV 577 (898)
Q Consensus 498 ~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~pl 577 (898)
|.+...||..|.|+.....-..|.| -+|+|||||||+|...++ +|+||.+.+|.++.|+.. ++ ++
T Consensus 160 F~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~---~~ 224 (502)
T KOG0454|consen 160 FYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GF---RE 224 (502)
T ss_pred eehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-cc---cc
Confidence 9999999999999987666677775 389999999999999876 999999999999999863 11 11
Q ss_pred ccCCCCceeecccCCCChHHHHHHhhhccCchhhhhhcccccC-CCcccccccCCCCCccccCC-CCc--cccCCCCCCc
Q 002630 578 GVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITK-GNPMWNQLSVPSGTLYAWDP-KST--YIHEPPYFKD 653 (898)
Q Consensus 578 g~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~i~~-~~~~w~~l~~~~~~~~~w~~-~st--yi~~pp~f~~ 653 (898)
+..++ +.-..|+..-.-+=....+.+ .+..+.. .++.-..+ +.+.-++ .|+ -+..++|.
T Consensus 225 ~~~k~-----~~~~~Ps~~l~~~g~s~sv~~-----~~~li~~ia~ds~t~i-----~~~at~e~~s~~sSl~m~~F~-- 287 (502)
T KOG0454|consen 225 FTGKD-----SLKVSPSPFLTLKGESPSVLP-----AKDLIVSIATDSSTDI-----PRVATMEFSSTTSSLGMETFH-- 287 (502)
T ss_pred ccccc-----cccCCCCceEEeCCCCccccc-----cccchhhhhccccccc-----cceecccCCCccccccCccee--
Confidence 10000 000112211000000000000 0000000 00000000 1111110 011 12222221
Q ss_pred CCCCCCCCCccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhh
Q 002630 654 MTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVN 733 (898)
Q Consensus 654 ~~~~~~~~~~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N 733 (898)
.+. .++.|||+||+|+|+ +||+.. ..+. ..++.|..+++.
T Consensus 288 ---------tLc-----~vv~dNiDTD~IIP~----------qfltli--~~~~-------------~~~~~f~~~~~d- 327 (502)
T KOG0454|consen 288 ---------TLC-----GVVADNIDTDQIIPA----------QFLTLI--PSTG-------------LILSCFYEVALD- 327 (502)
T ss_pred ---------eee-----hhhhhhCCcCcccCh----------hhhccc--ccch-------------hhhhhhhhheec-
Confidence 122 245599999999999 788753 2221 235667666642
Q ss_pred hhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhcc
Q 002630 734 KLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVG 813 (898)
Q Consensus 734 ~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin 813 (898)
|. |. -+ +..++++. +.|.+ -.|+|+|.|||||||||||+|++.+.|+++|||+||+|||++|++.
T Consensus 328 ----g~--~k-~~----~~dFv~~v-E~~~~---~siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~a 392 (502)
T KOG0454|consen 328 ----GL--PK-SF----VTDFVLPV-EPLRK---YSIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSVA 392 (502)
T ss_pred ----CC--ch-hh----ccceeccc-cccce---eEEEeccCCcccccccccCcchhhhcccceecchhHHHHHHHhHHh
Confidence 11 10 00 11244443 34443 3799999999999999999999999999999999999999999999
Q ss_pred CcccccccCCcchhhhccCCCCeEEEEeCCC
Q 002630 814 MGIIPLCFKPGEDAETHGLTGHERYTIDLPS 844 (898)
Q Consensus 814 ~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~ 844 (898)
+|.+|..-++....+. ...++..++.+..
T Consensus 393 tG~l~~~~s~~~v~de--~~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 393 TGELPPLPSEVRVCDE--CVTGDVYTVELSV 421 (502)
T ss_pred cCCccCCCceeeeccc--ceecceeeEEccc
Confidence 9998875443322221 1224455555543
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=7.7e-40 Score=318.67 Aligned_cols=141 Identities=35% Similarity=0.481 Sum_probs=124.2
Q ss_pred ecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 002630 672 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 751 (898)
Q Consensus 672 ~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~ 751 (898)
|..++||||||||||+ ||++ |||.+-+.+.+|. +..|.+. | +-+..++.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-c-ccccccccCCCc
Confidence 4568999999999985 6876 6788888888884 4567664 3 344677889999
Q ss_pred ccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhcc
Q 002630 752 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 831 (898)
Q Consensus 752 ~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~ 831 (898)
.++++++|++|++.|+|+|||||+|||||||||||||++++|||+||||+||+|||++||+|+|||||+|+++++++.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888775
Q ss_pred CCCCeEEEEe
Q 002630 832 LTGHERYTID 841 (898)
Q Consensus 832 l~g~e~~~Id 841 (898)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 567888875
No 38
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=1.1e-35 Score=297.65 Aligned_cols=156 Identities=29% Similarity=0.492 Sum_probs=126.8
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCC
Q 002630 670 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 749 (898)
Q Consensus 670 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~ 749 (898)
+.++||||+||||+|+ +||.. .|.+.|.+++|.++| |+
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 41 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD-----------------PE 41 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC-----------------cc
Confidence 5789999999999997 89864 256778889998876 11
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhh
Q 002630 750 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 829 (898)
Q Consensus 750 g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~ 829 (898)
.+.+.+ ...|||||+|||||||||||+|+++++||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 42 --------f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 42 --------FAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred --------hHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 122333 247999999999999999999999999999999999999999999999999999964 3555
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHH
Q 002630 830 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNL 893 (898)
Q Consensus 830 l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~ 893 (898)
+..+++++||+.. ++|++ ..+|+++.+.. .++.+++++++||++||++++.
T Consensus 109 --l~~gd~i~idl~~--------~~v~~-~~~g~~~~f~~--l~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 --IEDGDEVEVDLET--------GVITN-LTTGEEYKFKP--IPEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred --cCCCCEEEEECCC--------CEEEe-CCCCeEEEEee--CCHHHHHHHHcCCHHHHHHHhc
Confidence 3567889999765 24433 23478888863 3889999999999999999875
No 39
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=296.55 Aligned_cols=157 Identities=31% Similarity=0.493 Sum_probs=126.9
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCC
Q 002630 670 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 749 (898)
Q Consensus 670 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~ 749 (898)
+.++|||||||+|+|+ +||... .|.+.|.++.|.++| |
T Consensus 4 v~~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~-----------------p- 41 (166)
T PRK14023 4 VWKFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLR-----------------P- 41 (166)
T ss_pred eEEcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCC-----------------h-
Confidence 4689999999999998 898741 255778888888765 1
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhh
Q 002630 750 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 829 (898)
Q Consensus 750 g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~ 829 (898)
+.+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++. .+.++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~--~~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFES--EEVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCC--HHHHHH
Confidence 12245552 479999999999999999999999999999999999999999999999999874 344555
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHHHhh
Q 002630 830 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 895 (898)
Q Consensus 830 l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 895 (898)
+ ..+++++||+.. ++++. +|+++.+.. .++.+++++++|||++|++++-..
T Consensus 110 l--~~gd~i~vDl~~--------~~v~~---~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~~~~ 160 (166)
T PRK14023 110 L--EDGDEVELDLET--------GVLTR---GGETFQLRP--PPEFLLEALKEGSILEYYRKHGRF 160 (166)
T ss_pred h--CCCCEEEEECCC--------CEEEE---CCEEEEEee--CCHHHHHHHHcCCHHHHHHHhCCC
Confidence 4 457889999875 33432 567788877 588999999999999999997543
No 40
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.7e-35 Score=293.20 Aligned_cols=152 Identities=31% Similarity=0.524 Sum_probs=122.1
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCC
Q 002630 670 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 749 (898)
Q Consensus 670 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~ 749 (898)
..++||||+||||+|+ +||.. .+.|.|.+.+|.++| |+
T Consensus 3 v~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (154)
T TIGR02087 3 VWKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGID-----------------PE 40 (154)
T ss_pred eEEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCC-----------------ch
Confidence 3689999999999997 89863 255778888998875 11
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhh
Q 002630 750 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 829 (898)
Q Consensus 750 g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~ 829 (898)
.+.+.+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +.
T Consensus 41 --------f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 41 --------FAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred --------hhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 1123332 37999999999999999999999999999999999999999999999998887764 22
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002630 830 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 892 (898)
Q Consensus 830 l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~ 892 (898)
+..+++++||+.. ++|+ ..+|++|.+.. .++.+++++++||+++|++++
T Consensus 106 --i~~gd~i~vdl~~--------~~v~--~~~g~~~~~~~--l~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLET--------GEIR--VNGNEEYKGEP--LPDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCC--------CEEE--ECCCeEEEEeC--CCHHHHHHHHcCCHHHHHhcC
Confidence 3457789999775 2444 34567787743 389999999999999999874
No 41
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=2.3e-35 Score=292.69 Aligned_cols=154 Identities=28% Similarity=0.483 Sum_probs=122.4
Q ss_pred EeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCC
Q 002630 670 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 749 (898)
Q Consensus 670 L~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~ 749 (898)
+.++||||+||||+|+ +||.. .|.+.|.+..|.++| |+
T Consensus 3 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p~ 40 (156)
T TIGR02084 3 VHKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-----------------KD 40 (156)
T ss_pred eEEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------hh
Confidence 4689999999999997 88862 356778899998875 11
Q ss_pred CcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhh
Q 002630 750 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 829 (898)
Q Consensus 750 g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~ 829 (898)
.+.+++ ...|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|+ |+... ++.++.
T Consensus 41 --------f~~~~~---~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 41 --------FVKKVK---EGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred --------HHhhcC---CCCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 124453 24799999999999999999999999999999999999999999999996 65533 345555
Q ss_pred ccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHH
Q 002630 830 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIR 891 (898)
Q Consensus 830 l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~ 891 (898)
+ ..+++++||+.. .+|+. ..+|++|.+.. .++.+++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~--------~~v~~-~~~g~~~~~~~--~~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEK--------GIIKN-LTKGKEYKATP--FPEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCC--------CEEEE-ecCCEEEEeec--CCHHHHHHHHcCCHHHHhhC
Confidence 4 467889999865 23321 24578888884 37899999999999999874
No 42
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-35 Score=293.39 Aligned_cols=165 Identities=25% Similarity=0.454 Sum_probs=129.3
Q ss_pred EeecC-CCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecC
Q 002630 670 LLNFG-DSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIP 748 (898)
Q Consensus 670 L~~~g-D~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p 748 (898)
..++| |||+||+|+|+ |||+. +++.+| .++.|.++|+.- |
T Consensus 11 ~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~--------------P 51 (191)
T COG0066 11 VWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD--------------P 51 (191)
T ss_pred EEecCCCCCccccCccH----------HHhcc--cCHhhh-------------hhcccccccccC--------------c
Confidence 45677 99999999998 99985 667777 478999998531 2
Q ss_pred CCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhh
Q 002630 749 TGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAE 828 (898)
Q Consensus 749 ~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~ 828 (898)
+ |+.+. .+|+. .+|||||+|||||||||||+||++.+||+||||+||+|||++||+|+|+||+...+++..+
T Consensus 52 d----F~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~ 123 (191)
T COG0066 52 D----FVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTE 123 (191)
T ss_pred c----hhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHH
Confidence 1 33333 56664 4799999999999999999999999999999999999999999999999999987764444
Q ss_pred hccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc----CHHHHHHHHHh
Q 002630 829 THGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG----GILQYVIRNLI 894 (898)
Q Consensus 829 ~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG----GiL~yv~~~~~ 894 (898)
.+....+++++||++.+ + |+..++.++...+ ++..++++.+| ||+.|.++++.
T Consensus 124 l~~~~~g~~i~VDL~~~--------~--v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 124 LFEDVPGDEVTVDLETG--------E--VTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHhCCCCEEEEEcCCC--------e--EEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 44433578899998862 3 3334343343332 78999999999 99999998864
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=9e-34 Score=296.66 Aligned_cols=172 Identities=29% Similarity=0.393 Sum_probs=124.9
Q ss_pred ccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCC
Q 002630 663 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 742 (898)
Q Consensus 663 ~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~ 742 (898)
.+++ |+ .++|||||||||+|+ +||.... |...+.+.|.+..|.+++- +.
T Consensus 68 ~~~G-rv-~k~gDNIdTD~IiPa----------~~l~~~~----------sn~~~~~~l~~~~F~~l~~-~~-------- 116 (246)
T PLN00072 68 TFHG-LC-FVVGDNIDTDQIIPA----------EYLTLVP----------SKPDEYEKLGSYALIGLPA-FY-------- 116 (246)
T ss_pred eEEE-eE-EEeCCCcchhhcccH----------HHhcccc----------ccCCCHHHHHHhhhccCCc-ch--------
Confidence 3444 55 689999999999998 7887520 0011357788888877640 00
Q ss_pred ceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCc-cccccc
Q 002630 743 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCF 821 (898)
Q Consensus 743 ~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~G-ilpL~f 821 (898)
..+....|+. + .+ ..|||||+|||||||||||+|+++++||+||||+||+|||++||+|+| +||++.
T Consensus 117 ~~r~v~~Gd~----------~-~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~ 184 (246)
T PLN00072 117 KTRFVEPGEM----------K-TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES 184 (246)
T ss_pred hhcccCCCCC----------C-CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc
Confidence 0011111211 0 11 369999999999999999999999999999999999999999999999 788874
Q ss_pred CCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002630 822 KPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 892 (898)
Q Consensus 822 ~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~ 892 (898)
+.+.++.+ ..+++++||+.+ +.|+. ..+|++|.+++. . .+++++++|||++|++++
T Consensus 185 -~~~~~e~i--~~Gd~i~VDl~~--------~~v~n-~t~g~~~~~~p~--~-~~~~Il~aGGl~~y~r~~ 240 (246)
T PLN00072 185 -EVRICEEC--KTGDVVTVELGN--------SVLIN-HTTGKEYKLKPI--G-DAGPVIDAGGIFAYARKT 240 (246)
T ss_pred -cHHHHHhc--CCCCEEEEECCC--------CEEEE-CCCCeEEEecCC--H-HHHHHHHcCCHHHHHHhh
Confidence 33444543 467889999764 23332 356788988872 3 499999999999999987
No 44
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=100.00 E-value=6e-35 Score=281.53 Aligned_cols=128 Identities=43% Similarity=0.559 Sum_probs=117.4
Q ss_pred hHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCcccccchHHHHHHhcCCceEEEeCC
Q 002630 696 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 775 (898)
Q Consensus 696 ~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~ 775 (898)
+||+.+|+...++++|+.|++||++|.+++|.|.++.|.+..+...+.+.+.|+++.+.+++++.+|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 58888999999999999999999999999999999999999888889999999999999999999999888888888889
Q ss_pred ccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCC
Q 002630 776 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 823 (898)
Q Consensus 776 nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~ 823 (898)
|||||||||||||+++++||+||||+||+|||++||+|||||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 45
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=3.5e-32 Score=259.73 Aligned_cols=121 Identities=45% Similarity=0.704 Sum_probs=95.3
Q ss_pred ecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 002630 672 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 751 (898)
Q Consensus 672 ~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~ 751 (898)
++|||||||||+|++. +||.+ |++.+.|.+.+|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999963 35553 3566778888887643 1
Q ss_pred ccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhcc
Q 002630 752 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHG 831 (898)
Q Consensus 752 ~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~ 831 (898)
+.+.+++.. ...|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|+|||++++.+.++.
T Consensus 39 -----~f~~~~~~~-~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~-- 110 (121)
T cd01579 39 -----TFAERAKAA-GPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR-- 110 (121)
T ss_pred -----hHHhhcccC-CCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhh--
Confidence 112334432 246999999999999999999999999999999999999999999999999999987666654
Q ss_pred CCCCeEEEEeC
Q 002630 832 LTGHERYTIDL 842 (898)
Q Consensus 832 l~g~e~~~Id~ 842 (898)
+..+++++||+
T Consensus 111 ~~~gd~i~id~ 121 (121)
T cd01579 111 FEQGDQLELPL 121 (121)
T ss_pred cCCCCEEEcCC
Confidence 34567777653
No 46
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.97 E-value=3.9e-31 Score=269.36 Aligned_cols=163 Identities=26% Similarity=0.403 Sum_probs=120.9
Q ss_pred eEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeec
Q 002630 668 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 747 (898)
Q Consensus 668 ~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~ 747 (898)
|+....||||+||+|+|+ |||+. ++ .+.+.++.|.++|+.+. .|. .+.
T Consensus 10 ~~~~l~~dnIDTD~IiP~----------rfl~~--~~-------------~~~l~~~~f~~~R~~~~--~g~-~~~---- 57 (188)
T TIGR00171 10 LVAPLDAANVDTDAIIPK----------QFLKR--IT-------------RTGFGKHLFFDWRFLDA--NGK-EPN---- 57 (188)
T ss_pred EEEECCCCcCcHhhhhHH----------HHhCc--CC-------------HHHHHHhcccccccccc--ccC-CCC----
Confidence 555555999999999998 99975 22 34567889999996311 110 010
Q ss_pred CCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchh
Q 002630 748 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 827 (898)
Q Consensus 748 p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~ 827 (898)
|+ ++++. ..|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++.+..
T Consensus 58 p~----F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~i~ 129 (188)
T TIGR00171 58 PD----FVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDEVK 129 (188)
T ss_pred cc----hhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHHHH
Confidence 11 34443 45653 479999999999999999999999999999999999999999999999999999865444
Q ss_pred hhcc--CCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002630 828 ETHG--LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 883 (898)
Q Consensus 828 ~~l~--l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 883 (898)
+.+. ...+++++||+.. ++|+ ..+|+++.+.+ ++...+.|-.|
T Consensus 130 ~~~~~~~~~g~~i~vDl~~--------~~v~--~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 130 ELFGQVENQGLQMTVDLEN--------QLIH--DSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHhhCCCCEEEEECCC--------CEEE--eCCCeEEEEEe---CHHHHHHHHcC
Confidence 4321 2567889999876 3444 34567777774 66777777777
No 47
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.96 E-value=1e-30 Score=268.77 Aligned_cols=160 Identities=27% Similarity=0.437 Sum_probs=120.5
Q ss_pred eEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeec
Q 002630 668 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 747 (898)
Q Consensus 668 ~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~ 747 (898)
+++.+.||||+||+|+|+ +||+. + ..+.|.++.|.++|+... |...|
T Consensus 10 ~~~~l~~dnIDTD~IiPa----------~fl~~--~-------------~~~~l~~~~f~~~r~~~~---~~~~p----- 56 (200)
T PRK01641 10 LAVPLDRANVDTDQIIPK----------QFLKR--I-------------TRTGFGKGLFDDWRYLDD---GQPNP----- 56 (200)
T ss_pred EEEEcCCCCCChhhcchH----------hHcCc--C-------------CHHHHHHhhhcccccccc---CCCCC-----
Confidence 666666999999999998 89864 2 234567899999986311 11111
Q ss_pred CCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchh
Q 002630 748 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 827 (898)
Q Consensus 748 p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~ 827 (898)
.+++++ ++|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||+++++.+-.
T Consensus 57 -----~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~~i~ 127 (200)
T PRK01641 57 -----DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEEDVD 127 (200)
T ss_pred -----Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHHHHH
Confidence 133333 56653 479999999999999999999999999999999999999999999999999999754322
Q ss_pred hhcc-C--CCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhc
Q 002630 828 ETHG-L--TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 883 (898)
Q Consensus 828 ~~l~-l--~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 883 (898)
+... + ..+++++||+.. ++|+. .|+++.+.+ ++..++++.+|
T Consensus 128 ~l~~~~~~~~g~~i~vDl~~--------~~v~~---~~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 128 ELFKLVEANPGAELTVDLEA--------QTVTA---PDKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHhcCCCCEEEEEcCC--------CEEec---CCeEEEEEc---CHHHHHHHHcC
Confidence 2221 2 467889999876 33432 256777773 77889999998
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=4.2e-29 Score=226.71 Aligned_cols=73 Identities=33% Similarity=0.522 Sum_probs=63.2
Q ss_pred eEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeC
Q 002630 769 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDL 842 (898)
Q Consensus 769 ~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~ 842 (898)
.|||+|+|||||||||||+|+++++|+++|||+||+|||++||+|+|+||+++.++..++ .....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999988765554 2244556666653
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.95 E-value=8.2e-29 Score=223.38 Aligned_cols=71 Identities=44% Similarity=0.579 Sum_probs=63.9
Q ss_pred eEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEe
Q 002630 769 TVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTID 841 (898)
Q Consensus 769 ~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id 841 (898)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++...++.+ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 59999999999999999999999999999999999999999999999999999987777653 456666664
No 50
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.93 E-value=3e-26 Score=272.13 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=121.5
Q ss_pred ccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCC
Q 002630 663 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 742 (898)
Q Consensus 663 ~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~ 742 (898)
.|++ +| .++||||+||||||| +|+.. |.|.+...+..|.+.+
T Consensus 165 ~i~g-~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~------------ 206 (835)
T PRK09238 165 KITV-TV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR------------ 206 (835)
T ss_pred ccEE-EE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC------------
Confidence 4544 55 899999999999999 45532 4566666666665432
Q ss_pred ceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccc------------cccCeeEEEecchhHHHhhh
Q 002630 743 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP------------MLLGVKAVIAKSFERIHRSN 810 (898)
Q Consensus 743 ~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~------------~~lGV~aVIA~SFarIh~~N 810 (898)
|+ +.+.+++++..| ..|+|+|+|||||||||||++++ +..+.++|||+||+|||++|
T Consensus 207 -----p~-----f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~N 275 (835)
T PRK09238 207 -----PG-----PIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNT 275 (835)
T ss_pred -----Cc-----HHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhh
Confidence 11 233444444455 35999999999999999999996 23335999999999999999
Q ss_pred hccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHHHH
Q 002630 811 LVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQYV 889 (898)
Q Consensus 811 lin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~-~~~~~~~~~t~~e~~~~~aGGiL~yv 889 (898)
++|+|+|||+++ ++. +..|+.++||+.++ +|+ ..+|+ .+++.+ .++.+++++++||++||+
T Consensus 276 ain~GlLpIe~d----~~~--i~~Gd~i~Id~~~g--------~I~--~~~g~~~~~f~l--~p~~~~div~AGGli~~i 337 (835)
T PRK09238 276 MEDSGALPIELD----VSK--LNMGDVIDIYPYKG--------KIR--NETGEVIATFKL--KTDVLLDEVRAGGRIPLI 337 (835)
T ss_pred hHHcCCceEEeC----HHH--cCCCCEEEEECCCC--------EEE--eCCCeEEEEEec--CcHHHHHHHHcCChHHHH
Confidence 999999999985 333 34678899997752 343 23443 355555 578899999999999999
Q ss_pred HHHHh
Q 002630 890 IRNLI 894 (898)
Q Consensus 890 ~~~~~ 894 (898)
+.|-+
T Consensus 338 ~gr~l 342 (835)
T PRK09238 338 IGRGL 342 (835)
T ss_pred Hhccc
Confidence 98754
No 51
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.93 E-value=8.1e-27 Score=222.02 Aligned_cols=99 Identities=26% Similarity=0.418 Sum_probs=79.5
Q ss_pred CCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCCceeecCCCccc
Q 002630 674 GDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKL 753 (898)
Q Consensus 674 gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~~t~~~p~g~~~ 753 (898)
-|||+||||+|+ +||.... ...|.|.+..|.+.+ |+
T Consensus 3 ~DnInTD~IiP~----------~y~~~~~-------------~~~e~la~~~~e~~d-----------------p~---- 38 (129)
T cd01674 3 ADNLNTDGIYPG----------KYTYQDD-------------ITPEKMAEVCMENYD-----------------SE---- 38 (129)
T ss_pred ccccchhccCcc----------cccccCC-------------CCHHHHHHhhcccCC-----------------ch----
Confidence 589999999998 6773111 134667777776653 11
Q ss_pred ccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCC
Q 002630 754 SVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 823 (898)
Q Consensus 754 ~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~ 823 (898)
.+.+.+ ...|||+|+|||||||||||+|+++.+||+||||+||+|||+||++|+|+|||++++
T Consensus 39 ----f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 39 ----FSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred ----hhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 122222 247999999999999999999999999999999999999999999999999999975
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.91 E-value=2.2e-25 Score=244.18 Aligned_cols=421 Identities=14% Similarity=0.051 Sum_probs=297.4
Q ss_pred CcHHHHHHHHhhhcCC---CCceeEeeecceeeecCCCchhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcC
Q 002630 59 VKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (898)
Q Consensus 59 ~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~g~dp~~inp~~pv~lviDH~v~~~ 135 (898)
..++..+||+++..+. ..|-++...+|-.+.||..+.-+..-+ ..+++....+|+|+. +...+||..-+.
T Consensus 65 dp~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vp 137 (502)
T KOG0454|consen 65 DPMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVP 137 (502)
T ss_pred CCcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEec
Confidence 3688899999987653 235567788888888998776554321 122333334555543 467899975554
Q ss_pred ccccHHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCcceeeeeccccceeeecCCCcccC-CeEeecCCCCcc
Q 002630 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTM 214 (898)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppg~GI~Hqv~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~ 214 (898)
-.+ .-....+.+++.|-...-.| .|- .+--+|..-+--.|.||.-.. + .+.-.| ....|+||||++
T Consensus 138 gsg--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~yerc---a------stsnRnfEgrqGa~srThl 204 (502)
T KOG0454|consen 138 GSG--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHYERC---A------STSNRNFEGRQGADSRTHL 204 (502)
T ss_pred Cch--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHHHHh---h------hccCCCccccccccccchh
Confidence 322 11112222333332211122 453 233345555545799996322 2 456667 468999999999
Q ss_pred cCcccceeecCCHHHHHHHHcCCcEEeecCcEEEEEEecccCCCCchhhHHHHHHHHHHHcCccceEEEEecCCccccCh
Q 002630 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 294 (898)
Q Consensus 215 ~galG~lg~GVGg~ea~~am~g~~~~~~vPevvgV~L~G~L~~GVtakDliL~i~~~L~~~G~~gk~vEf~G~gv~~LS~ 294 (898)
.++.+.++-|+|+.++..........+++|.++.+++.|+.+.-..++|+++.++...-..+...+..||-+--. +|++
T Consensus 205 ma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m 283 (502)
T KOG0454|consen 205 MAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGM 283 (502)
T ss_pred hhhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccC
Confidence 999999999999999999888788899999999999999999999999999999888888888899999977656 8999
Q ss_pred hhhhhhhccCcccccccccccCCHHHHHHHhhcCCChhhHHHHHHHHHhcccccccCCCC-CeeeEEEEEEcCCcccCcc
Q 002630 295 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESE-RVYSSYLELNLEEVVPCVS 373 (898)
Q Consensus 295 ~~R~TIaNMa~E~GAt~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l~~~~~d~~-a~Y~~~ieiDLs~veP~vA 373 (898)
+.|+|||||..|-+-|-+|+|+|-.|+-|-....++.. + -| +.|.+ +.|...+.+|.+..+|..+
T Consensus 284 ~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~--~~dg~~k~~~~dFv~~vE~~~~~si 349 (502)
T KOG0454|consen 284 ETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EV--ALDGLPKSFVTDFVLPVEPLRKYSI 349 (502)
T ss_pred cceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hh--eecCCchhhccceeccccccceeEE
Confidence 99999999999999999999998777766444333221 1 13 23433 7789999999999999999
Q ss_pred CCCCCCCccccCccccchHhhhcccccCCCccCccccccccceeccCCCcccccCCceEEEEeecCCCCCChHHHHHHHH
Q 002630 374 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 453 (898)
Q Consensus 374 ~P~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 453 (898)
.|+. ||.===++- .|-.|...++|+|+-..-++.|+
T Consensus 350 ii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~I---- 385 (502)
T KOG0454|consen 350 IIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYARI---- 385 (502)
T ss_pred Eecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHHH----
Confidence 8887 544211110 13345677899999999888665
Q ss_pred HHHHHHhCCCccCCceeEEEEcCCHHHHHH-----HHHc---CcHHHHHhcCcEEeccCcccccCCCCCCchHHHhhhcc
Q 002630 454 VAKKACELGLEVKPWIKTSLAPGSGVVTKY-----LQNS---GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITE 525 (898)
Q Consensus 454 La~~A~~~G~kv~p~Vk~~v~PgS~~V~~~-----l~~~---Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~ 525 (898)
.+|+-++.|++++. -..+.|..+-++.. +-.+ =++.+++..+..=+.|-|..|.++.-+ .+-...++
T Consensus 386 FfrN~~atG~l~~~--~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~~k 460 (502)
T KOG0454|consen 386 FFRNSVATGELPPL--PSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYARK 460 (502)
T ss_pred HHHhHHhcCCccCC--CceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhhcc
Confidence 46777889998773 34455555433321 1111 155667777776678999999997521 12222222
Q ss_pred CceEEEEeeccCCCCCCCCCCcCCceeecCHHHHHHHHHccc
Q 002630 526 NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 567 (898)
Q Consensus 526 ~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~VaA~AlaG~ 567 (898)
+ .+|+|.||||++|||....++|||||.+|+|+++.|+
T Consensus 461 -e---~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 461 -E---GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred -c---cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2 2689999999999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.89 E-value=8.4e-24 Score=203.72 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=57.4
Q ss_pred eEEEeCCccCCCCcchhhhcccc------------ccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCe
Q 002630 769 TVILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 836 (898)
Q Consensus 769 ~IiVAG~nyG~GSSRE~Aa~~~~------------~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e 836 (898)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||++|++|+|+||++++. +. +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~----~~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDV----SV--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCH----HH--cCCCC
Confidence 49999999999999999999998 77999999999999999999999999998862 11 34556
Q ss_pred EEEEe
Q 002630 837 RYTID 841 (898)
Q Consensus 837 ~~~Id 841 (898)
.+++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 66554
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.88 E-value=6.8e-23 Score=243.02 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=119.9
Q ss_pred ccccceEEeecCCCCCcCcccCCCCCCCCChHhhHHHHcCCCCcCCCcccccCCchhhcccccccchhhhhhhcCCCCCC
Q 002630 663 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 742 (898)
Q Consensus 663 ~i~~a~vL~~~gD~itTDhIsPaG~i~~~spa~~~L~~~g~~~~~~n~ygsrrgn~evm~rg~f~n~r~~N~l~~g~~g~ 742 (898)
.|++ + ..++||+|+||+|||+ +||..+ .+.+.+.+..|.+.+
T Consensus 166 ~i~g-~-V~k~gddinTD~i~Pa----------~~a~sr--------------~D~~~~a~~m~~~~~------------ 207 (844)
T TIGR00117 166 KITV-T-VFKVTGETNTDDLSPA----------PDAWTR--------------PDIPLHALAMLKNAR------------ 207 (844)
T ss_pred heEE-E-EEEeCCCCchhccCCh----------hhhhcC--------------CCHHHHHHHHhhcCC------------
Confidence 4554 4 4599999999999998 787653 233344444443322
Q ss_pred ceeecCCCcccccchHHHHHHhcCCceEEEeCCccCCCCcchhhhccc-------------cccCeeEEEecchhHHHhh
Q 002630 743 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRS 809 (898)
Q Consensus 743 ~t~~~p~g~~~~i~~~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~-------------~~lGV~aVIA~SFarIh~~ 809 (898)
|+ ..+.-.+.++.|.| |+|+|+|||||||||||+.++ +.+| .+|||+||+|||+|
T Consensus 208 -----p~-----~~~~i~~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfr 275 (844)
T TIGR00117 208 -----EG-----IEPQIEALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFN 275 (844)
T ss_pred -----cc-----HHHHHHHhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhc
Confidence 11 11111233445533 999999999999999999999 9999 99999999999999
Q ss_pred hhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCE-EEEEEecCCCHHHHHHHHhcCHHHH
Q 002630 810 NLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGK-SFTCVIRFDTEVELAYFDHGGILQY 888 (898)
Q Consensus 810 Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~-~~~~~~~~~t~~e~~~~~aGGiL~y 888 (898)
|++|.|+|||+++ .+. +..|+.++||+.++ +|+. .+|+ .+++.+ .++..++++++||++||
T Consensus 276 nain~Gl~~ie~~----~~~--l~~GD~i~Id~~~G--------~I~n--~~g~~~~~f~~--~p~~l~div~AGGli~~ 337 (844)
T TIGR00117 276 TMEDSGALPIEVD----VSN--LNMGDVIDIYPYKG--------EITN--HEGELLATFEL--KPETLLDEVRAGGRIPL 337 (844)
T ss_pred chhhcCCCeEEeC----Hhh--cCCCCEEEEECCCC--------EEEe--CCCCEEEEeee--CCHHHHHHHHcCCchhh
Confidence 9999999999886 222 45678899997752 3332 3454 377765 47788999999999999
Q ss_pred HHHHHh
Q 002630 889 VIRNLI 894 (898)
Q Consensus 889 v~~~~~ 894 (898)
+.-|-+
T Consensus 338 i~gr~l 343 (844)
T TIGR00117 338 IIGRGL 343 (844)
T ss_pred hhcccc
Confidence 988754
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.76 E-value=8.3e-19 Score=167.02 Aligned_cols=91 Identities=29% Similarity=0.318 Sum_probs=69.2
Q ss_pred CCCcchhhhccccccCeeEEEecchhHHHhhhhccCcccccccCCcchhhhccCCCCeEEEEeCCCCcccCCCCceEEEE
Q 002630 779 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVV 858 (898)
Q Consensus 779 ~GSSRE~Aa~~~~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~ 858 (898)
||||||||+|+++.+||+||||+||++||++||+|+||||+.+.+........+..+++++||+.+ ++|+
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~~~~~l~~~~~g~~i~vDL~~--------~~v~-- 71 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVTVDLEQ--------QKII-- 71 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHHHHHHHhccCCCCEEEEEcCC--------CEEE--
Confidence 999999999999999999999999999999999999999999876443323345678899999876 3333
Q ss_pred cCCCEEEEEEecCCCHHHHHHHHhc
Q 002630 859 TDSGKSFTCVIRFDTEVELAYFDHG 883 (898)
Q Consensus 859 ~~~G~~~~~~~~~~t~~e~~~~~aG 883 (898)
. .+++|.+.+ .+.....|-+|
T Consensus 72 ~-~~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 72 S-PVEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred c-CCeEEEEEE---CHHHHHHHHhC
Confidence 2 235677766 33444444454
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.75 E-value=4e-18 Score=202.47 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=96.6
Q ss_pred HHHHHhcCCceEEEeCCccCCCCcchhhhccc-------------cccCeeEEEecchhHHHhhhhccCcccccccCCcc
Q 002630 759 AMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 825 (898)
Q Consensus 759 a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~-------------~~lGV~aVIA~SFarIh~~Nlin~GilpL~f~~~~ 825 (898)
-...|+.|.| |+|+|+|||||||||||+.++ +..|+.+ ||+||+|||+||++|.|+|||+++
T Consensus 285 i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~--- 359 (938)
T PLN00094 285 IEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD--- 359 (938)
T ss_pred HHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc---
Confidence 3577888877 889999999999999999999 9999999 999999999999999999999986
Q ss_pred hhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEE-EEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002630 826 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSF-TCVIRFDTEVELAYFDHGGILQYVIRNLI 894 (898)
Q Consensus 826 ~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~-~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 894 (898)
.+. +..|+.++||..++ +|+. ..+|+++ ++.+ .++..++++++||++||++-|-+
T Consensus 360 -v~~--i~~GD~I~id~~~G--------~I~n-~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 -VKN--LNMGDVIDIYPYEG--------VVKR-HGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred -Hhh--cCCCCEEEEEcCCC--------EEEe-cCCCeEEEeccC--CChHHHHHHHcCCcHhhhhcccc
Confidence 222 45678899987652 2321 3467777 5555 47889999999999999998754
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.21 E-value=1.8e-06 Score=88.34 Aligned_cols=118 Identities=21% Similarity=0.255 Sum_probs=71.6
Q ss_pred HHHHHHhcCCceEEEeCCccCCCCcchhhhccccccC------------eeEEEecchhHHHhhhhccCcccccccCCcc
Q 002630 758 AAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLG------------VKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 825 (898)
Q Consensus 758 ~a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lG------------V~aVIA~SFarIh~~Nlin~GilpL~f~~~~ 825 (898)
+-+..|+.|.|++.| |.--|+||||--|.-...... .-.||...++.||++-+---|-||++++-
T Consensus 45 ~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~dv-- 121 (204)
T PF06434_consen 45 QIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECDV-- 121 (204)
T ss_dssp HHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE-----
T ss_pred HHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEec--
Confidence 346778889886666 788999999998876553322 24689999999999999999999998642
Q ss_pred hhhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEE-EEEEecCCCHHHHHHHHhcCHHHHHHHHHh
Q 002630 826 DAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLI 894 (898)
Q Consensus 826 ~~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~-~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 894 (898)
. .+..|+.++|+.-+ | ++. ..+|+. .++.+ .++...+-+||||-+|.+.-|-+
T Consensus 122 --~--~l~~Gdvi~I~p~~-------g-ki~--~~~gev~~~f~l--~p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 122 --S--SLNTGDVITIYPYE-------G-KIY--KENGEVISTFEL--KPQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp --T--T--TT-EEEEETTT-------T-EEE--ETT--EEEE-----S-TCHHHHHHHTSHHHHHHHHHH
T ss_pred --c--ccCCCcEEEEecCC-------c-EEE--CCCCCEEEEeec--CchhHHHHHhcCCcEEEEechHH
Confidence 2 24567888887554 2 222 344531 22222 24456688999999999988754
No 58
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.66 E-value=0.031 Score=64.47 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=59.9
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002630 430 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 505 (898)
Q Consensus 430 ~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 505 (898)
+|+.++|| |=--|.+.++..|.+| +|+|+++.++++|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 56677775 8888899999999999 99999999988776 689999999999999999999999997655
No 59
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=95.36 E-value=0.026 Score=66.60 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=72.8
Q ss_pred HHHHHhcCCceEEEeCCccCCCCcchhhhccccccCe------------eEEEecchhHHHhhhhccCcccccccCCcch
Q 002630 759 AMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPGED 826 (898)
Q Consensus 759 a~~y~~~g~~~IiVAG~nyG~GSSRE~Aa~~~~~lGV------------~aVIA~SFarIh~~Nlin~GilpL~f~~~~~ 826 (898)
-+..++.|.|.+.| |.--|.||||--|.-.....+- -.|+..-.+.||+.-+-.-|-||++++-
T Consensus 214 i~~lk~Kg~~vayv-gdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~dv--- 289 (852)
T COG1049 214 IEALKQKGHPVAYV-GDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVDV--- 289 (852)
T ss_pred HHHHhhcCceEEEe-ccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEeee---
Confidence 35678888875555 5559999999987654333222 2355556678888888888888887632
Q ss_pred hhhccCCCCeEEEEeCCCCcccCCCCceEEEEcCCCEEEEEEecCCCHHHHHHHHhcCHHHHHHHH
Q 002630 827 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRN 892 (898)
Q Consensus 827 ~~~l~l~g~e~~~Id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~ 892 (898)
-.+..|+.++|+--+ | +++ ...+|+.+ .+..+-++..++.+|+||-+|.+.-|
T Consensus 290 ---~~l~~Gdvi~i~py~-------g-ki~-~~~~ge~v-~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 290 ---SNLEMGDVIDIYPYE-------G-KIR-NNNTGEVV-ATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred ---ccccccceEEeeccC-------C-eee-ccCCCcEE-EEeecCchhHHHHHhcCCceeEEEcc
Confidence 123456777776333 2 222 12234322 22222477889999999998877654
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=93.24 E-value=0.22 Score=56.47 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=57.9
Q ss_pred ceEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 002630 430 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 505 (898)
Q Consensus 430 ~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC 505 (898)
.++..+|| |---|.+.++..|.+| +|+|-++.+.++|+ -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 45566775 7778899999999999 89888888877765 689999999999999999999999997553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=90.45 E-value=0.63 Score=53.75 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=56.6
Q ss_pred eEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEEcCCHHHHHHHHHcCcHHHHHhcCcEEeccCcccccC
Q 002630 431 VVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG 510 (898)
Q Consensus 431 V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG 510 (898)
+++++| +|=--|.+.++.-|++| +|++.++.++++|. -|+.|+ +.+.|+.+.++++|+.++.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556677 68888899999999999 89877777776655 567777 99999999999999999997776 664
No 62
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=28.89 E-value=46 Score=30.54 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=25.7
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 002630 435 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 466 (898)
Q Consensus 435 ~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~ 466 (898)
+|+||..|.-... +||+.|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht~-lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHTF-MAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 6899999987765 477888899999998777
No 63
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=25.47 E-value=63 Score=32.12 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCCchHHHhhh---ccCceEEEEeeccCCCC
Q 002630 513 GDIDDAVAAAI---TENDIVAAAVLSGNRNF 540 (898)
Q Consensus 513 g~l~~~~~~~i---~~~~~~~~~vsS~NRNF 540 (898)
|.+++.+.+-+ .+.++..+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 67888888877 45567788899999999
No 64
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=25.01 E-value=61 Score=31.92 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=24.7
Q ss_pred cEEeccCcccccCCCCCCchHHHhhhc---cCceEEEEeeccCCCC
Q 002630 498 FHIVGYGCTTCIGNSGDIDDAVAAAIT---ENDIVAAAVLSGNRNF 540 (898)
Q Consensus 498 ~~i~~~GC~~CiG~~g~l~~~~~~~i~---~~~~~~~~vsS~NRNF 540 (898)
|.++.|.=+..-+ .+.++..+.+-++ ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 3444443333332 3448888888887 4555666789999999
No 65
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=22.67 E-value=42 Score=37.47 Aligned_cols=40 Identities=33% Similarity=0.649 Sum_probs=28.4
Q ss_pred ccHHH-HHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCccee
Q 002630 138 RSENA-VQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVH 182 (898)
Q Consensus 138 ~~~~a-~~~n~~~e~~rn~ery~flk~~~~~f~~~~-~~ppg~GI~H 182 (898)
|..+| ....+..+|-+|.|+|. +||-++ +- +-|||+|=-|
T Consensus 125 GqEeAK~kcrli~~yLenPe~Fg--~WAPkn---VLFyGppGTGKTm 166 (368)
T COG1223 125 GQEEAKRKCRLIMEYLENPERFG--DWAPKN---VLFYGPPGTGKTM 166 (368)
T ss_pred chHHHHHHHHHHHHHhhChHHhc--ccCcce---eEEECCCCccHHH
Confidence 44455 45667889999999877 899764 44 4578887655
No 66
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.24 E-value=97 Score=30.64 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=27.1
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 002630 433 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 466 (898)
Q Consensus 433 ~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~ 466 (898)
+++||+|..|=-.-.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 6899999999776666 56777888999998777
Done!