Query 002630
Match_columns 898
No_of_seqs 357 out of 2908
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 16:47:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002630.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1347-1350//hhsearch_pdb/002630hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 2106.6 65.1 886 4-895 1-888 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1492.1 55.9 699 60-893 34-751 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 853.2 38.3 448 37-610 343-838 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 357.1 -1.9 283 538-896 47-355 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 298.0 8.4 181 648-883 5-187 (213)
6 2pkp_A Homoaconitase small sub 1.0 1 1 292.5 9.8 157 668-895 6-162 (170)
7 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 287.1 6.7 152 670-894 7-159 (163)
8 3vba_A Isopropylmalate/citrama 1.0 1 1 272.9 10.7 160 667-895 7-166 (176)
9 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 258.6 6.0 166 663-883 9-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 249.6 6.6 158 663-883 9-169 (171)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=2106.65 Aligned_cols=886 Identities=61% Similarity=1.065 Sum_probs=837.1
Q ss_pred CCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99610012410069997225997078999989888982457787420024585677599999998311499994059530
Q 002630 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (898)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rvllEn~lR~~~~~~~~~~~iekil~~~~~~~~~~ei~~~ 83 (898)
.+||+..+++|...++ .|+||+|++++...+++|||||||||||+|||||+..++++++++++.|..+..++.+|.|+
T Consensus 1 ~~~~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 78 (888)
T 2b3y_A 1 SNPFAHLAEPLDPVQP--GKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFK 78 (888)
T ss_dssp CCTTGGGEEESCTTST--TCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEEC
T ss_pred CCCHHHHHCCCCCCCC--EEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 9820454332678896--26999847726332310883299999888750578633699999996543468989778896
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45444217874669999999999999909998743789987999269987585452779995149999994431113411
Q 002630 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (898)
Q Consensus 84 pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~er~~flkw 163 (898)
||||+|||+||+|+++||++||++++++|.||.|+||.+||++++||+||++.++..+|..+|+.++|+||.|||.||||
T Consensus 79 pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w 158 (888)
T 2b3y_A 79 PARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 158 (888)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 44788774635789999999899998619984333778870699579987677665477999999999985215777898
Q ss_pred CCCCCCCCEEECCCCCCEEEEECCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEEC
Q ss_conf 01124663020899961001210101205542798224783762389875568544054037879999999279078445
Q 002630 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (898)
Q Consensus 164 ~~~~f~~~~v~ppg~GI~Hqv~lE~la~~v~~~~G~~~PdtivGtDSHT~~~galG~la~GvGg~ea~aamlg~~~~~~v 243 (898)
++++|+||+|+|||+|||||||+||||++||.++|+++|||||||||||||+||||+|||||||+|++++|+|||+||++
T Consensus 159 ~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~ 238 (888)
T 2b3y_A 159 GSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVL 238 (888)
T ss_dssp HHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEEC
T ss_pred HHHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECC
T ss_conf 89764487888999888065425341554212576113672885688765567440589746889999999559076048
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 81899999621699976112799999999974732139999428766569332353311382226510343487789999
Q 002630 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (898)
Q Consensus 244 PevvgV~L~G~L~~gVtakDivL~i~~~Lr~~G~vgk~vEf~G~gv~~LSv~dRaTIaNMa~E~GAt~~~fp~D~~t~~y 323 (898)
||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|+||+|++|++|
T Consensus 239 PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~Y 318 (888)
T 2b3y_A 239 PQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITY 318 (888)
T ss_dssp CCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHH
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
T ss_conf 97889999704898946568999999996638855559999467325466121010530226549705785683889999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCC-CCC-CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 96409990148999999986232345-688-9970108999986984338558999997323675520057641044467
Q 002630 324 LKLTGRSDDTVSMIESYLRANKMFVD-YSE-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 401 (898)
Q Consensus 324 L~~tgr~~~~~~~~~~y~~~~~l~~~-~~d-~~a~Y~~vieiDLs~ieP~vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~ 401 (898)
|+.|||++++++++|+|++++++|++ .+| ++|.|+++++||||+|+|+||||++|||+++|++++++|.+++..+.++
T Consensus 319 L~~~gr~~~~~~~~e~y~~a~~l~~~l~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 319 LVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 98649846778778999998998753488878984679999871005574128899330008677223477765211223
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 77568500112331001389864225775689984058899986799999999999985799338862299971879999
Q 002630 402 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 481 (898)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~Vk~~vaPgS~~V~ 481 (898)
+++..........++++++|+++.|.||+|++|||||||||||||+|+||++|||+|+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred CCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH
T ss_conf 44453200102451241189502236886889998068789857799999999999986699779985399968989999
Q ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHH
Q ss_conf 99998690899973493994357633547989996578864114962788752167887898798678606339799999
Q 002630 482 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 561 (898)
Q Consensus 482 ~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~~~~~~yLaSP~~VaA 561 (898)
+||+++|++++|+++||.|++||||+||||+++++++++++|.++|+++++|||+||||+||||+..+++|||||++|||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHH
T ss_conf 99998396999997698996788741037878877303433204871489995267786767898765557558999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98706333467778754489994110345899938889885303681134320012248996654456899984325999
Q 002630 562 YALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 641 (898)
Q Consensus 562 ~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~ 641 (898)
|||+|+|++|+++||+|.+++|++|||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++++.+++|+|+++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98607311365458655588998300235688635568998722898774444301357750013577888875466887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 86445999987688999998864364598631787786851479999999957669988198976777556667860110
Q 002630 642 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIM 721 (898)
Q Consensus 642 styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~ItTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm 721 (898)
||||++||||++++..+.+++++.++|+|+++|||||||||||||+|+++||||+||+++|+.+++||||||||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHHH
T ss_conf 65245899866555678886663375799971687661546667665678878999986499857712412234677777
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEEC
Q ss_conf 12443321334321289879931104898533110079999860996199918866799840122000220480279814
Q 002630 722 ARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAK 801 (898)
Q Consensus 722 ~rg~Fan~r~~N~~~~~~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~ 801 (898)
+||+|+|+|+.|+|++ .+|++|+|+|+|+.|++||++++|+++|+++|||||+|||||||||||||+++++||+||||+
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~ 797 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAE 797 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEES
T ss_pred HHHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEH
T ss_conf 5412233433232344-458722436998626626568988754985699898777887537899999998193299971
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 12677753101376133125896504210699980799967897556799964999928997999995599999999999
Q 002630 802 SFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFD 881 (898)
Q Consensus 802 SF~rIhr~Nlin~GiLpL~f~~~~~~~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~ 881 (898)
||+||||+||+|||||||+|+++++++++++.+++.++|++.+ .++||+.++++..+|++|++.++++|+.|++||+
T Consensus 798 SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~ 874 (888)
T 2b3y_A 798 SYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFL 874 (888)
T ss_dssp CBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCEEEEECCC---CCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHH
T ss_conf 5989998546655883175066223988545799369997434---5689967999937984999995589999999998
Q ss_pred HCCHHHHHHHHHHH
Q ss_conf 23999999999741
Q 002630 882 HGGILQYVIRNLIN 895 (898)
Q Consensus 882 aGGiL~yv~~~~~~ 895 (898)
+||||||+++++++
T Consensus 875 aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 875 NGGILNYMIRKMAK 888 (888)
T ss_dssp HTSHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHC
T ss_conf 19899999997509
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1492.10 Aligned_cols=699 Identities=31% Similarity=0.471 Sum_probs=609.1
Q ss_pred CHHHHHHHHHHHCCCC------C-CEEEEEECCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 5999999983114999------9-40595304544421787466999999999999990999874378998799926998
Q 002630 60 KSKDVEKIIDWETTSP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSV 132 (898)
Q Consensus 60 ~~~~iekil~~~~~~~------~-~~ei~~~pdrvl~qD~tg~~a~~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv 132 (898)
.+|+.|||++.|.... . +.+|.++|||+++||+||++++++|++ +|.++ +..|.++++||++
T Consensus 34 ~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-------~G~~~----v~~P~~~~~DH~v 102 (753)
T 1c96_A 34 PLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-------SGLPK----VAVPSTIHCDHLI 102 (753)
T ss_dssp CCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-------HTCSS----CSSCEEEECCSSC
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHH-------HCCCC----CCCCCCEECCCCC
T ss_conf 978999999997578544442699978999833898852530899999998-------09998----8898764348987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEECCCCCEEEECCCCCCCCC-EEEECCCC
Q ss_conf 75854527799951499999944311134110112466302089996100121010120554279822478-37623898
Q 002630 133 QVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 211 (898)
Q Consensus 133 ~~~~~~~~~a~~~n~~~e~~rn~er~~flkw~~~~f~~~~v~ppg~GI~Hqv~lE~la~~v~~~~G~~~Pd-tivGtDSH 211 (898)
|++..+..+ +..++.+|.|+|+||+|.+++| |++|+|||+||||||++|+ +++|+ ++||||||
T Consensus 103 ~~~~~~~~d-----~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSH 166 (753)
T 1c96_A 103 EAQLGGEKD-----LRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSH 166 (753)
T ss_dssp CBSSCHHHH-----HHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTT
T ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCCC
T ss_conf 777776643-----5554365799999999999977-9779899988507370303----------13799678658887
Q ss_pred CCCCCCCCCEEECCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 75568544054037879999999279078445818999996216999761127999999999747321399994287665
Q 002630 212 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSE 291 (898)
Q Consensus 212 T~~~galG~la~GvGg~ea~aamlg~~~~~~vPevvgV~L~G~L~~gVtakDivL~i~~~Lr~~G~vgk~vEf~G~gv~~ 291 (898)
|||+||||+|||||||+|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+|||+++
T Consensus 167 T~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~ 246 (753)
T 1c96_A 167 TPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDS 246 (753)
T ss_dssp GGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGG
T ss_pred CCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 77656224314456789999998288654027868999996116989667899999988853288414899997773154
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 69332353311382226510343487789999964099901489999999862323456889970108999986984338
Q 002630 292 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEVVPC 371 (898)
Q Consensus 292 LSv~dRaTIaNMa~E~GAt~~~fp~D~~t~~yL~~tgr~~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~vieiDLs~ieP~ 371 (898)
||+++|||||||++|+|||+|+||+|++|++||+.++|++ .++++++|.+ +| .+|++|.|+++++||||+|+|+
T Consensus 247 LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l--~~D~~A~Yd~~ieiDls~leP~ 320 (753)
T 1c96_A 247 ISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL--VPDPGCHYDQVIEINLSELKPH 320 (753)
T ss_dssp SCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS--SCCTTCCCSEEEEEEGGGCCCE
T ss_pred CCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHH---HC--CCCCCCCEEEEEEEECCCCCEE
T ss_conf 7710023354046653852030057489999998659837-8899999986---43--5899995569999982210024
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 55899999732367552005764104446777568500112331001389864225775689984058899986799999
Q 002630 372 VSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGA 451 (898)
Q Consensus 372 vAgP~~P~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA 451 (898)
||+|++|||+++|+++...+++ ++.+ -+|++||||||||||++|+ .+|
T Consensus 321 va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~Dl-~~A 368 (753)
T 1c96_A 321 INGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYEDM-GRS 368 (753)
T ss_dssp EECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHHH-HHH
T ss_pred ECCCCCCCCEEEHHHHHHHHHH--------------------------CCCC-----CCEEEEEEECCCCCCHHHH-HHH
T ss_conf 2279997554186885456763--------------------------5886-----4157999815789987999-999
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEE
Q ss_conf 99999998579933886229997187999999998690899973493994357633547989996578864114962788
Q 002630 452 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 531 (898)
Q Consensus 452 ~lLak~A~~~G~kv~~~Vk~~vaPgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~ 531 (898)
+.++|+|+++|+ ++.||++|+|||++|++||+++|++++|+++||.|++|||++||||+++.. ++. .+++ +
T Consensus 369 A~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~---~ 439 (753)
T 1c96_A 369 AAVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN---T 439 (753)
T ss_dssp HHHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE---E
T ss_pred HHHHCCHHHCCC--CCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--CCC--CCCC---E
T ss_conf 999605765699--988508996998999999998584999997696995688506236888755--566--7762---2
Q ss_pred EEECCCCCCCCCCC-CCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 75216788789879-86786063397999999870633346777875448999411034589993888988530368113
Q 002630 532 AVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDM 610 (898)
Q Consensus 532 ~V~S~NRNF~GR~g-~~~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~ 610 (898)
+|||+||||+|||| ...+.+|||||++||||||+|+|++|+.+||| .+++|++|||+| |+.+|+++ ++
T Consensus 440 ~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~--------~~ 508 (753)
T 1c96_A 440 IVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR--------AE 508 (753)
T ss_dssp EEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------SC
T ss_pred EEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH--------HH
T ss_conf 78605678444557899872365589999999973976468000535-577897033149--96200046--------54
Q ss_pred HHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 4320012248996654456899-984325999864459999876889999988643645986317877868514799999
Q 002630 611 FKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIH 689 (898)
Q Consensus 611 ~~~~y~~i~~~~~~w~~l~~~~-~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~ItTDhIsPaG~i~ 689 (898)
|. .+++.|+.++.+. +..|.|+++|||++.||+|++. +..++.++++|+++||+||||||||||
T Consensus 509 f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~~-----~~~~~~~~~vL~klgd~iTTDhIsPAG--- 573 (753)
T 1c96_A 509 FD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKW-----DGKDLEDLQILIKVKGKCTTDHISAAG--- 573 (753)
T ss_dssp CC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCCC-----CSSCEEEEEEEEEBCSCCBHHHHBCCG---
T ss_pred CC-------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-----CCCCCCCCEEEEECCCCCCCCCCCCCC---
T ss_conf 26-------786333268998876127528987555679988888-----765533543787326875556605664---
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCC--CCCCC---CEEECCCCCCCCCCHHHHHHHH
Q ss_conf 999576699881989767775566678601101244332133432128--98799---3110489853311007999986
Q 002630 690 KDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP---KTIHIPTGEKLSVFDAAMRYKN 764 (898)
Q Consensus 690 ~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~N~~~~--~~~g~---~t~~~p~~~~~~i~~~a~~y~~ 764 (898)
+||++ ||+|+|++ .|.|.. +.+++ +++|+|+++.++++|++++|++
T Consensus 574 ------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y~~ 624 (753)
T 1c96_A 574 ------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYYKQ 624 (753)
T ss_dssp ------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHHHH
T ss_pred ------HHHCC----------------------CCCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf ------34301----------------------66554411-33220664345787661477358741365779999997
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCC
Q ss_conf 09961999188667998401220002204802798141267775310137613312589650421069998079996789
Q 002630 765 EGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPS 844 (898)
Q Consensus 765 ~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~~~l~l~g~e~~~id~~~ 844 (898)
+|+++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+++++++. ++++|.++|+...
T Consensus 625 ~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~--l~~gd~i~I~gl~ 702 (753)
T 1c96_A 625 HGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNK--IHPVDKLTIQGLK 702 (753)
T ss_dssp HTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGG--CCTTCEEEEECGG
T ss_pred HCCCEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCCCEEECCCCHHHH--CCCCCEEEECCHH
T ss_conf 37973999557678875267777657874756998643899998545546986366047520632--6899889976867
Q ss_pred CCCCCCCCCEEEE--ECCCC--EEEEEEECCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7556799964999--92899--7999995599999999999239999999997
Q 002630 845 SVSEIRPGQDVRV--VTDSG--KSFTCVIRFDTEVELAYFDHGGILQYVIRNL 893 (898)
Q Consensus 845 ~~~~l~~g~~v~v--~~~~G--~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~ 893 (898)
++.++..+++ ...+| .+|.+.++ +|+.|++||++||||||++++.
T Consensus 703 ---~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 703 ---DFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp ---GCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred ---HCCCCCEEEEEEEECCCCEEEEEEECC-CCHHHHHHHHCCCHHHHHHHHH
T ss_conf ---737896699999916996799999578-9989999998499999999860
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=853.23 Aligned_cols=448 Identities=22% Similarity=0.323 Sum_probs=384.0
Q ss_pred CCCCHHHHHHHHHHCCCCCC---------------CCCCHHHHHHHHHHHCCC---CCCEEEEEECCEEEECCCCCHHHH
Q ss_conf 88982457787420024585---------------677599999998311499---994059530454442178746699
Q 002630 37 DKLPYSIKILLESAIRNCDE---------------FQVKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAV 98 (898)
Q Consensus 37 ~~lP~s~rvllEn~lR~~~~---------------~~~~~~~iekil~~~~~~---~~~~ei~~~pdrvl~qD~tg~~a~ 98 (898)
..+||.++-.|-.-.|..-| ...++|++|||++++.+. .+|.+|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred CHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHH-
T ss_conf 9666530003799999875899066404877877789886699999999738886589988999844999863575899-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 99999999999909998743789987999269987585452779995149999994431113411011246630208999
Q 002630 99 VDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS 178 (898)
Q Consensus 99 ~dlaamr~~~~~~G~dp~~i~p~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~er~~flkw~~~~f~~~~v~ppg~ 178 (898)
|++++++|.+ +++++. +..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHCCCC--CCCCCE-EEEECCCCCCCCC---------HHHHHHHHHHHHHHHHCCC-------EEECCCC
T ss_conf ------9999972897--578874-9997787776789---------7889999899999997397-------6747998
Q ss_pred CCEEEEECCCCCEEEECCCCCCCCCE-EEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCC
Q ss_conf 61001210101205542798224783-76238987556854405403787999999927907844581899999621699
Q 002630 179 GIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRD 257 (898)
Q Consensus 179 GI~Hqv~lE~la~~v~~~~G~~~Pdt-ivGtDSHT~~~galG~la~GvGg~ea~aamlg~~~~~~vPevvgV~L~G~L~~ 257 (898)
|||||++. ++++|++ +|||||||||+||+| +|.|+.+++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~-----------~~~~PG~~ivGtDSHT~~~~Glg---~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLN-----------RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHG-----------GGCCTTCEEEESSTTCCCSSSEE---CCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred CEEEEEEC-----------CCCCCCCEEEECCCCCCCCCCCE---ECCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCC
T ss_conf 52103413-----------50204636982798866223532---07627999999970966504797789999702798
Q ss_pred CCCHHHHHHHHHHHHHHCC------------CCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 9761127999999999747------------32139999428766569332353311382226510343487-7899999
Q 002630 258 GVTATDLVLTVTQMLRKHG------------VVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYL 324 (898)
Q Consensus 258 gVtakDivL~i~~~Lr~~G------------~vgk~vEf~G~gv~~LSv~dRaTIaNMa~E~GAt~~~fp~D-~~t~~yL 324 (898)
|||+|||||+|+++++++| ++||+||| +|+++||+++|+|||||++|+|||+|+||+| +.|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHH
T ss_conf 987288999999998752533423347623300489998--251017855565576410310872699937778999999
Q ss_pred HH----------CCCC-----HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 64----------0999-----01489999999862323456889970108999986984-33855899999732367552
Q 002630 325 KL----------TGRS-----DDTVSMIESYLRANKMFVDYSESERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMK 388 (898)
Q Consensus 325 ~~----------tgr~-----~~~~~~~~~y~~~~~l~~~~~d~~a~Y~~vieiDLs~i-eP~vAgP~~P~~~~~l~e~~ 388 (898)
+. +||+ +++++.++.|++++++| .+|++|.|+++++||||+| ||+||+|++|||++++++++
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l--~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~ 698 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL--EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQ 698 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC--CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTT
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE--CCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHHHC
T ss_conf 86334333331048752011789999999987416500--3689984789999971137788763899847546625533
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 00576410444677756850011233100138986422577568998405889998679999999999998579933886
Q 002630 389 ADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPW 468 (898)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~~~ 468 (898)
+. +|+++|||||||+ ++|++.||.+| ||+++++.
T Consensus 699 ~~---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~ 732 (865)
T 1l5j_A 699 GE---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLP 732 (865)
T ss_dssp TC---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCS
T ss_pred CC---------------------------------------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCCCC
T ss_conf 03---------------------------------------1016999358899-89999999997------27666899
Q ss_pred EEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 22999718799999999869089997349399435763354798999657886411496278875216788789879867
Q 002630 469 IKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLT 548 (898)
Q Consensus 469 Vk~~vaPgS~~V~~~l~~~Gl~~~l~~aG~~i~~~GC~~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~~~ 548 (898)
|+++|+|||++|+.||+++|++++|.++||.|.+||||+||||++.+. ++++ ++||+||||+||||+.
T Consensus 733 v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~~--------~ge~---~isTsNRNF~GR~G~~- 800 (865)
T 1l5j_A 733 TRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA--------DGAT---VVSTSTRNFPNRLGTG- 800 (865)
T ss_dssp SEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCCC--------TTCE---EEESSSCCCTTSSSTT-
T ss_pred CCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCCCCCCCCCCCC--------CCCE---EEECCCCCCCCCCCCC-
T ss_conf 897997989999999998584999997597893785502658388679--------9998---9966886877777887-
Q ss_pred CCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 86063397999999870633346777875448999411034589993888988530368113
Q 002630 549 RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDM 610 (898)
Q Consensus 549 ~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~ 610 (898)
..+|||||++||||||+|+| |+.+|+.+++...++|+.
T Consensus 801 ~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~~ 838 (865)
T 1l5j_A 801 ANVFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTAV 838 (865)
T ss_dssp CEEEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTHH
T ss_pred CCEEECCHHHHHHHHHCCCC------------------------CCHHHHHHHHHHHCCCCC
T ss_conf 50677799999999967868------------------------988999999986228744
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=357.06 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=216.1
Q ss_pred CCCCCCCCCC------CCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCHHHHH----HHHHH-C
Q ss_conf 8878987986------786063397999999870633346777875448999411-0345899938889----88530-3
Q 002630 538 RNFEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-S 605 (898)
Q Consensus 538 RNF~GR~g~~------~~~~yLaSP~~VaA~AlaG~i~~d~~~~plg~~~~G~~v-~l~diwP~~~ei~----~~~~~-~ 605 (898)
.-|++|+.|. ++++||+|+ |.+++..+.|+++..+++||....|..| +|.||| +.+|+. +.+.. .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 9997077989980788899999998--71745478649899987510489997319999884-75356899999987620
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 68113432001224899665445689998432599986445999987688999998864364598631787786851479
Q 002630 606 VLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPA 685 (898)
Q Consensus 606 v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~w~~~styi~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~ItTDhIsPa 685 (898)
+..++|.+.|.....||+.|+++ ++.|...+-+..+|+.- ..+++ ++ .+++||||||+||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~v-~~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-TV-FKVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-EE-EEEEEEEEHHHHSCG
T ss_pred CCHHHHHHHHHHHHCCCHHHHHH------HHHCCCCCCCCCCCCCC----------CEEEE-EE-EECCCCCCHHCCCCH
T ss_conf 20988999999986138989999------87311432002588878----------53899-99-965897754030766
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHC
Q ss_conf 99999995766998819897677755666786011012443321334321289879931104898533110079999860
Q 002630 686 GSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNE 765 (898)
Q Consensus 686 G~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~N~~~~~~~g~~t~~~p~~~~~~i~~~a~~y~~~ 765 (898)
+||..+ . +.+.+.++.|.++|.. +.++ ++.+ + .-+....+++..
T Consensus 186 ----------~~l~~~-~-------------d~~~~a~~lf~~~r~~--~~p~--------f~~~-~-~~~~~i~~~~~~ 229 (865)
T 1l5j_A 186 ----------PDAWSR-P-------------DIPLHALAMLKNAREG--IEPD--------QPGV-V-GPIKQIEALQQK 229 (865)
T ss_dssp ----------GGGGGT-T-------------SHHHHGGGTTCSCBTT--BCCS--------BTTT-B-CSHHHHHHHHTT
T ss_pred ----------HHHHCC-C-------------CHHHHHHHHHHCCCCC--CCCC--------CCCC-C-CCHHHHHHHHCC
T ss_conf ----------563218-9-------------9799999972112358--9832--------1233-5-604444565349
Q ss_pred CCCEEEEECCCCCCCCCCHHHHCCC-------------CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 9961999188667998401220002-------------204802798141267775310137613312589650421069
Q 002630 766 GHDTVILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGL 832 (898)
Q Consensus 766 g~~~iiVAG~nyG~GSSRE~Aa~~~-------------~~lGV~aVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~~~l~l 832 (898)
|. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+||++++ .+. +
T Consensus 230 G~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l 301 (865)
T 1l5j_A 230 GF-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--L 301 (865)
T ss_dssp SS-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--C
T ss_pred CC-EEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHCC-CEEEECHHHHHHHHHHHHCCCCEEEEC----HHH--C
T ss_conf 98-799979835268645889999998715777687464428-859964698999977997699568833----866--4
Q ss_pred CCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99807999678975567999649999289979-99995599999999999239999999997411
Q 002630 833 TGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLINV 896 (898)
Q Consensus 833 ~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~-~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~~ 896 (898)
..++.++||+.. ++++ ...+|++ +++.+ ++++.++++++||+++|++++.+..
T Consensus 302 ~~Gd~i~Idl~~--------g~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l~~ 355 (865)
T 1l5j_A 302 NMGDVIDVYPYK--------GEVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGLTT 355 (865)
T ss_dssp CTTCEEEEETTT--------TEEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC--------CEEE-ECCCCEEEEEEEE--CCHHHHHHHHCCCHHHHHHCCHHHH
T ss_conf 999789998889--------9899-7699859999776--9879999998699666530003799
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=297.97 Aligned_cols=181 Identities=22% Similarity=0.339 Sum_probs=139.7
Q ss_pred CCCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 99987688999998864--3645986317877868514799999999576699881989767775566678601101244
Q 002630 648 PPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 725 (898)
Q Consensus 648 pp~f~~~~~~~~~~~~i--~~arvL~~~gD~ItTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~ 725 (898)
.|||+++.......+.+ ..++++.+.|||||||||||| +||+. +.+++ |.+++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGGT
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCHH----------HHHCC--CCHHH-------------HHHHH
T ss_conf 6655873015556888138999999928987784222669----------88673--89878-------------88887
Q ss_pred CCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCHHH
Q ss_conf 33213343212898799311048985331100799998609961999188667998401220002204802798141267
Q 002630 726 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 805 (898)
Q Consensus 726 Fan~r~~N~~~~~~~g~~t~~~p~~~~~~i~~~a~~y~~~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SF~r 805 (898)
|+++|+.|+ +|.++|. ++.+. .+|+. +.|||||+|||||||||||+|+++++||+||||+||+|
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred HHCCCCCCC--CCCCCCC----------CCCCC-HHHCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
T ss_conf 533402255--8887987----------01151-33058---72899358889997779999999984875899755999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 775310137613312589650421069998079996789755679996499992899799999559999999999923
Q 002630 806 IHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 883 (898)
Q Consensus 806 Ihr~Nlin~GiLpL~f~~~~~~~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 883 (898)
|||+||+|||+|||+|++++..+.+....++.++||+.. ++|+ ..+| ++.+. + ++...+++.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~~~~~l~~~~~G~~i~VDl~~--------~~I~--~~~g-~~~f~--i-~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKEVRDKLAKLKPTDEVTVNLFE--------QKIY--SPVG-DFSFD--I-DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHHHHHHHHTSCTTCEEEEETTT--------TEEE--ETTE-EEECC--C-CHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCEEECHHHHHHHHCCCCCCEEEEECCC--------CEEE--ECCC-EEEEE--C-CHHHHHHHHCC
T ss_conf 999889976997487088999998514999789998889--------9999--7995-49986--8-99999999829
No 6
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=292.48 Aligned_cols=157 Identities=31% Similarity=0.507 Sum_probs=127.4
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCEEEC
Q ss_conf 59863178778685147999999995766998819897677755666786011012443321334321289879931104
Q 002630 668 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 747 (898)
Q Consensus 668 rvL~~~gD~ItTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~N~~~~~~~g~~t~~~ 747 (898)
+ +.++|||||||||+|| +||. |.|.+.+.+.+|.++|
T Consensus 6 ~-v~~~~dnIdTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~----------------- 42 (170)
T 2pkp_A 6 R-AHKFGDDVDTDAIIPG----------PYLR---------------TTDPYELASHCMAGID----------------- 42 (170)
T ss_dssp E-EEECCSCCBHHHHSCG----------GGGS---------------CCCHHHHHTTTTTTTC-----------------
T ss_pred E-EEECCCCCCHHHCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------
T ss_conf 9-9977998885544727----------7758---------------7998999997566678-----------------
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 89853311007999986099619991886679984012200022048027981412677753101376133125896504
Q 002630 748 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 827 (898)
Q Consensus 748 p~~~~~~i~~~a~~y~~~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~ 827 (898)
| +.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ +
T Consensus 43 p--------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~ 107 (170)
T 2pkp_A 43 E--------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----T 107 (170)
T ss_dssp T--------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----G
T ss_pred C--------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----H
T ss_conf 7--------45773788---8789936877898788999999998587399973388999856887799569835----8
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 21069998079996789755679996499992899799999559999999999923999999999741
Q 002630 828 ETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 895 (898)
Q Consensus 828 ~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 895 (898)
+. +.+++.++|++.. + ++. ...+|.+|++. ..++.+++++++||+|||++++++.
T Consensus 108 ~~--l~~gd~i~idl~~-------~-~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 108 DE--IKDGDIVEIDLDK-------E-EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp GG--CCTTCEEEEETTT-------T-EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HH--CCCCCEEEEECCC-------C-EEE-ECCCCEEEEEE--ECCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 88--6999689998879-------9-999-77998599999--6999999999929999999998776
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=287.09 Aligned_cols=152 Identities=36% Similarity=0.554 Sum_probs=122.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 86317877868514799999999576699881989767775566678601101244332133432128987993110489
Q 002630 670 LLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPT 749 (898)
Q Consensus 670 L~~~gD~ItTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~N~~~~~~~g~~t~~~p~ 749 (898)
+.++|||||||||+|| +||. |+|.+.+.+.+|.++| |
T Consensus 7 ~~~~~dnidTD~IiPa----------~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITPG----------RYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSCT----------TSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEECCCCCCHHCCCHH----------HHHC---------------CCCHHHHHHHHCCCCC-----------------C-
T ss_conf 9983998884025437----------7738---------------7998899997677668-----------------6-
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 85331100799998609961999188667998401220002204802798141267775310137613312589650421
Q 002630 750 GEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAET 829 (898)
Q Consensus 750 ~~~~~i~~~a~~y~~~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SF~rIhr~Nlin~GiLpL~f~~~~~~~~ 829 (898)
+.+.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||+|||+|+ ++
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~- 108 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TE- 108 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CT-
T ss_pred -------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCEEEEC----HH-
T ss_conf -------54773788---8789955867898888999999998598799971388999856887799669823----78-
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEE-EEEEECCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 06999807999678975567999649999289979-999955999999999992399999999974
Q 002630 830 HGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKS-FTCVIRFDTEVELAYFDHGGILQYVIRNLI 894 (898)
Q Consensus 830 l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~-~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 894 (898)
.+.+++.++|++.. + .++ +|++ |++.. .++.+++++++||+|||+++++.
T Consensus 109 -~l~~gd~i~idl~~-------~-~v~----~g~~~~~~~~--~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 109 -GLKDGDLVTVNWET-------G-EVR----KGDEILMFEP--LEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp -TCCTTCEEEEETTT-------T-EEE----ETTEEEECEE--CCHHHHHHHHTTSHHHHHHHSCC
T ss_pred -HCCCCCEEEEECCC-------C-EEE----CCCEEEEEEC--CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf -82899389998669-------9-898----8918999872--99999999991999999999876
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=272.87 Aligned_cols=160 Identities=25% Similarity=0.450 Sum_probs=126.7
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCEEE
Q ss_conf 45986317877868514799999999576699881989767775566678601101244332133432128987993110
Q 002630 667 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIH 746 (898)
Q Consensus 667 arvL~~~gD~ItTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~N~~~~~~~g~~t~~ 746 (898)
.+++ ++|||||||+|+|| +||.. .+.+.+.+.+|.++|
T Consensus 7 g~v~-~~gdnIdTD~IiPa----------~~l~~---------------~~~~~l~~~~f~~~~---------------- 44 (176)
T 3vba_A 7 GRVW-KFGNNVDTDAILPA----------RYLVY---------------TKPEELAQFVMTGAD---------------- 44 (176)
T ss_dssp EEEE-ECCSSCBHHHHSCG----------GGTTC---------------CSHHHHGGGTTTTTC----------------
T ss_pred EEEE-EECCCCCHHHCCCH----------HHHCC---------------CCHHHHHHHHCCCCC----------------
T ss_conf 8999-90897656643808----------77086---------------998999975176778----------------
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 48985331100799998609961999188667998401220002204802798141267775310137613312589650
Q 002630 747 IPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 826 (898)
Q Consensus 747 ~p~~~~~~i~~~a~~y~~~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SF~rIhr~Nlin~GiLpL~f~~~~~ 826 (898)
|+ .+.+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++++ +.
T Consensus 45 -p~--------F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~ 110 (176)
T 3vba_A 45 -PD--------FPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--GI 110 (176)
T ss_dssp -TT--------HHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--TH
T ss_pred -CC--------HHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEECC--HH
T ss_conf -31--------7875478---8889967876288567899999999697499965277899866987699868761--68
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 421069998079996789755679996499992899799999559999999999923999999999741
Q 002630 827 AETHGLTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 895 (898)
Q Consensus 827 ~~~l~l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 895 (898)
++. +..++.++||+.+ ++|.. ..+|+++.+.. .++.+++++++||++||++++...
T Consensus 111 ~~~--~~~gd~i~idl~~--------~~v~~-~~~g~~~~~~~--l~~~~~~ii~aGGli~~~k~~~~~ 166 (176)
T 3vba_A 111 SEK--VNEGDELEVNLET--------GEIKN-LTTGEVLKGQK--LPEFMMEILEAGGLMPYLKKKMAE 166 (176)
T ss_dssp HHH--CCTTCEEEEETTT--------CEEEE-TTTCCEEECCC--CCHHHHHHHHHTSHHHHHHHHHHT
T ss_pred HHH--CCCCCEEEEECCC--------CEEEE-CCCCEEEEEEC--CCHHHHHHHHCCCHHHHHHHHCCH
T ss_conf 874--5999889998899--------99996-78986999854--999999999939989999985334
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=258.58 Aligned_cols=166 Identities=24% Similarity=0.367 Sum_probs=123.3
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 64364598631787786851479999999957669988198976777556667860110124433213343212898799
Q 002630 663 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 742 (898)
Q Consensus 663 ~i~~arvL~~~gD~ItTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~N~~~~~~~g~ 742 (898)
.+.| +++.+.+|||+||+|+|+ +||+. +.+.+| .+++|.++|+.. +|.+.+
T Consensus 9 ~~~G-~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~~ 59 (203)
T 3q3w_A 9 IHKG-IACPLEYANIDTDQIIPK----------QFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESVL 59 (203)
T ss_dssp EEEE-EEEEECCSSCBHHHHSCG----------GGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCSB
T ss_pred EEEE-EEEECCCCCCCHHHCCHH----------HHCCC--CCHHHH-------------HHHHHHHHHCCC---CCCCCC
T ss_conf 9999-999888865684015509----------77486--898899-------------886434322135---678778
Q ss_pred CEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 31104898533110079999860996199918866799840122000220480279814126777531013761331258
Q 002630 743 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 822 (898)
Q Consensus 743 ~t~~~p~~~~~~i~~~a~~y~~~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SF~rIhr~Nlin~GiLpL~f~ 822 (898)
. |+ ++.+. .+|+. ..|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++++
T Consensus 60 ~----pd----F~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~ 127 (203)
T 3q3w_A 60 N----MD----FNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELA 127 (203)
T ss_dssp C----TT----SGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECC
T ss_pred C----CC----HHHCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf 9----88----11265-33589---8889969877888767899999998295299978289999978876798759868
Q ss_pred CCCHHHHCC---CCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 965042106---9998079996789755679996499992899799999559999999999923
Q 002630 823 PGEDAETHG---LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 883 (898)
Q Consensus 823 ~~~~~~~l~---l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 883 (898)
+........ ...+++++||+.. ++|+ . +|.++.+.. ++...+.+.+|
T Consensus 128 ~~~~~~l~~~~~~~~g~~i~VDL~~--------~~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 128 KDEVLEIVDELKKSQDKNIEISLLE--------KRVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp HHHHHHHHHHHHHCSCCEEEEETTT--------TEEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHCC
T ss_conf 8999999998623899789998889--------9999--8-999999984---99999999809
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=249.60 Aligned_cols=158 Identities=23% Similarity=0.304 Sum_probs=118.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 64364598631787786851479999999957669988198976777556667860110124433213343212898799
Q 002630 663 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 742 (898)
Q Consensus 663 ~i~~arvL~~~gD~ItTDhIsPaG~i~~~spa~~~L~~~g~~~~~fn~yg~rrgn~evm~rg~Fan~r~~N~~~~~~~g~ 742 (898)
.+++ +++.+.||||+||+|+|+ +||+. +.+ +.+.+++|.++|..
T Consensus 9 ~~~G-~~~~l~~dnIdTD~IiPa----------~~L~~--~~~-------------~~l~~~~f~~~R~~---------- 52 (171)
T 3h5j_A 9 THSG-IGVPLRRSNVDTDQIIPA----------VFLKR--VTR-------------TGFEDGLFAGWRSD---------- 52 (171)
T ss_dssp EEEE-EEEEECCCSCCHHHHSCG----------GGTTC--CSC-------------SCCGGGTTTTGGGS----------
T ss_pred EEEE-EEEECCCCCCCCCCCCCH----------HHCCC--CCH-------------HHHHHHHHCCCCCC----------
T ss_conf 9999-999866876683017746----------55487--998-------------99988754067679----------
Q ss_pred CEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 31104898533110079999860996199918866799840122000220480279814126777531013761331258
Q 002630 743 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 822 (898)
Q Consensus 743 ~t~~~p~~~~~~i~~~a~~y~~~g~~~iiVAG~nyG~GSSRE~Aa~~~~~lGV~aVIA~SF~rIhr~Nlin~GiLpL~f~ 822 (898)
|+ ++.+. .+|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++|++|+|+|||+++
T Consensus 53 -----p~----F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~ 119 (171)
T 3h5j_A 53 -----PA----FVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVA 119 (171)
T ss_dssp -----TT----SGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECC
T ss_pred -----CC----CCCCC-CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCEEEEC
T ss_conf -----68----00065-02479---8689968873488677999999998699599988478999868987697539968
Q ss_pred CCCHHHHCC---CCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 965042106---9998079996789755679996499992899799999559999999999923
Q 002630 823 PGEDAETHG---LTGHERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHG 883 (898)
Q Consensus 823 ~~~~~~~l~---l~g~e~~~id~~~~~~~l~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aG 883 (898)
+....+... ...+++++||+.. +++. . .|.++.+.. .+...+.+.+|
T Consensus 120 ~~~~~~l~~~~~~~~g~~i~VDl~~--------~~i~--~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 120 QDDVELLWKLIEQSPGLEITANLQD--------RIIT--A-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEETTT--------TEEE--E-TTEEEECBC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCC--------CEEE--E-CCEEEEEEE---CHHHHHHHHHC
T ss_conf 8999999998624999689999889--------9999--8-999999998---99999998818
Done!