BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002631
         (898 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MTK|A Chain A, X-Ray Structure Of Diguanylate CyclasePHOSPHODIESTERASE
           FRO Caldicellulosiruptor Saccharolyticus, Northeast
           Structural Consortium Target Clr27c
 pdb|3MTK|B Chain B, X-Ray Structure Of Diguanylate CyclasePHOSPHODIESTERASE
           FRO Caldicellulosiruptor Saccharolyticus, Northeast
           Structural Consortium Target Clr27c
          Length = 178

 Score = 33.1 bits (74), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 60/118 (50%), Gaps = 14/118 (11%)

Query: 95  HLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFD 154
           H+ K ++ ++ + N+AF+  F+R A   K  ++   ++R  +   LP  + G++ +  F+
Sbjct: 65  HISKRIKDIAGEGNKAFKIGFDRFAIICKSENISDFIERXLSQLLLPYNVNGNLIRVNFN 124

Query: 155 LAVREYKKAKSIALPSHVNILKR----VLEEVEKVMQEFKAMLYKSMEDPHIDLTNLE 208
           +   + + +   A     N+ +R    +++  E+ + E+  +++K    P I++  LE
Sbjct: 125 IGAAQIENSNEAA----ANLXRRCDLALIKAKEEGLNEY--VIFK----PSIEIQTLE 172


>pdb|3MC4|A Chain A, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
           TRANSFERASE Hexapeptide Repeat: Serine
           O-Acetyltransferase From Brucella Melitensis
 pdb|3MC4|B Chain B, Crystal Structure Of WwRSP5WWP DOMAIN: BACTERIAL
           TRANSFERASE Hexapeptide Repeat: Serine
           O-Acetyltransferase From Brucella Melitensis
          Length = 287

 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 19/103 (18%)

Query: 492 MKSSMDQISLMIHSLRSEATKSED--------MYAQLLEIQESVRLSFLNRFLDFAGHLE 543
           M + +DQ+  + HS+R+EA ++          +YA +L  Q S+  + ++R  +  GH +
Sbjct: 22  MNAGLDQVDPIWHSIRAEAEEATRNDPVLGAFLYATILN-QPSLEEAVMHRIAERLGHPD 80

Query: 544 HIASELAQN-----KSNKESQH-----LQNGYSSDPCTESLSD 576
             A  L Q      ++N E  H     +Q  Y  DP      D
Sbjct: 81  VSADILRQTFDTMLEANPEWSHVLRVDIQAVYDRDPAYSRFMD 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,652,734
Number of Sequences: 62578
Number of extensions: 982832
Number of successful extensions: 2858
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2854
Number of HSP's gapped (non-prelim): 19
length of query: 898
length of database: 14,973,337
effective HSP length: 108
effective length of query: 790
effective length of database: 8,214,913
effective search space: 6489781270
effective search space used: 6489781270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)