Query 002631
Match_columns 898
No_of_seqs 201 out of 328
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 15:47:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002631.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1351-1355//hhsearch_pdb/002631hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 1.0 1 1 48.1 11.2 107 636-754 184-291 (325)
2 3fhn_A Protein transport prote 1.0 1 1 34.5 14.3 178 625-816 502-694 (706)
3 2d2s_A Exocyst complex compone 1.0 1 1 31.2 20.3 201 130-426 11-218 (235)
4 2fji_1 Exocyst complex compone 1.0 1 1 24.4 26.4 336 432-827 7-370 (399)
5 3n1e_A Vacuolar protein sortin 1.0 1 1 19.1 10.2 82 667-755 42-126 (141)
6 3m3w_A Pacsin3, protein kinase 1.0 1 1 14.5 9.8 24 94-117 23-46 (320)
7 2qho_B E3 ubiquitin-protein li 1.0 1 1 14.5 3.0 30 810-839 7-40 (53)
8 2yxh_A MAZG-related protein; T 1.0 1 1 13.9 0.7 20 171-190 24-43 (116)
9 2rpa_A Katanin P60 ATPase-cont 1.0 1 1 13.9 4.8 47 145-191 20-74 (78)
10 3i2w_A Syndapin, LD46328P; EFC 1.0 1 1 13.5 7.4 156 34-195 68-235 (290)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=48.11 Aligned_cols=107 Identities=15% Similarity=0.169 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
Q ss_conf 999999989788566759999873211289988988888741268999999999999998403033-4999999999999
Q 002631 636 GLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVEGL 714 (898)
Q Consensus 636 qLd~~Lfe~Yv~~k~~~L~~~I~~gil~~g~dW~~~~~P~~VRpYv~e~Ll~LV~VHaEV~sia~~-Ll~rvLs~Lve~v 714 (898)
.-+.++|+. +..|.+-+.. ...+||.+..+|++.++|+.+++..|=.+=+ +.+..|+ ....+.-.-...+
T Consensus 184 ~Ae~~I~~~-v~~KIDdfl~-------la~yDW~~~~~~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~hi 254 (325)
T 2a2f_X 184 DAEKQVGLR-ICSKIDEFFE-------LSAYDWLLVEPPGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHI 254 (325)
T ss_dssp HHHHHHHHH-HHHHHHHHHT-------TCCTTCC----CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHH-------HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999-9989999987-------6036887888999856899999999999999-987399999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999985312103445546801368999669999983123
Q 002631 715 IDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNP 754 (898)
Q Consensus 715 a~elL~~f~~~~~~~v~~f~~~G~lQAtLDiefl~~tL~~ 754 (898)
++.++..+-.. .|++|+++|..|..+|+.|+++-...
T Consensus 255 s~~l~~~Ll~~---~vk~in~~av~~~~~Dv~~lE~fa~~ 291 (325)
T 2a2f_X 255 AEKIYSIMYDE---DVKQISTGALTQINLDLMQCEFFAAS 291 (325)
T ss_dssp HHHHHHHHTC---------CCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCC---CHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986486---11432999999899999999999872
No 2
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=34.47 Aligned_cols=178 Identities=10% Similarity=0.091 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4189999989999999-9989788566759999873211289988988888--------741268999999999999998
Q 002631 625 TDIQDLVMSFSGLEEK-VLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAV--------KGVRDVAVELLHTLVAVHAEV 695 (898)
Q Consensus 625 ~~~~~~~~~l~qLd~~-Lfe~Yv~~k~~~L~~~I~~gil~~g~dW~~~~~P--------~~VRpYv~e~Ll~LV~VHaEV 695 (898)
...+++...+..+-.+ ..+.++..-..-+....++|.-. -.|...+.+ -.+++-.-+.|..|.--=+..
T Consensus 502 SIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~--s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L 579 (706)
T 3fhn_A 502 SLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKI--STWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKL 579 (706)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHC--CGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6089999999999988899999999999999999877481--66856678776665556889888999999999999999
Q ss_pred HHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 403--033499999999999999999853121034455468013689996699999831236891489999999999999
Q 002631 696 FAG--AKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLE 773 (898)
Q Consensus 696 ~si--a~~Ll~rvLs~Lve~va~elL~~f~~~~~~~v~~f~~~G~lQAtLDiefl~~tL~~Y~t~~A~~~~~~l~~~~~~ 773 (898)
... ++....++-..++..+..-+.+..-. ..+|+.+|+.|...|++.+-.+++.+... +...++.+.+.+.=
T Consensus 580 ~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~-----~nkFS~~Ga~Qf~~D~~~L~~v~~lp~~~-~~~~~~~L~E~l~L 653 (706)
T 3fhn_A 580 DSMDIPLAISLKVKNELLNVIVNYFTESILK-----LNKFNQNGLNQFLHDFKSLSSILSLPSHA-TNYKCMSLHELVKI 653 (706)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT-----TSCBCHHHHHHHHHHHHHHHTTSCCCTTC-CCHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHH
T ss_conf 9813777899999999999999999999986-----08648888999999999999985688841-45677999999998
Q ss_pred HHHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHCCCCCCCHHHHH
Q ss_conf 9876888642299999999----899811225632078888957899
Q 002631 774 KATVSVAEAVENPGHHRRP----TRGSEDALADERQQGMTVSPDDLI 816 (898)
Q Consensus 774 ~~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 816 (898)
=...- ++...+-.. ..|-.+.+-+.. +--..++++++
T Consensus 654 L~L~~-----d~~~~~f~~~~y~~~~~~~~l~~~~-~i~~l~~~~i~ 694 (706)
T 3fhn_A 654 LKLKY-----DPNNQQFLNPEYIKTGNFTSLKEAY-SIKYLKDTKIQ 694 (706)
T ss_dssp HGGGG-----CGGGTTTTSHHHHHHCCCSHHHHHH-TCSSSCHHHHH
T ss_pred CCCCC-----CCCHHHHHHHHHHCCCCHHHHHHHC-CCCCCCHHHHH
T ss_conf 17988-----7422067789887017748899864-86468878999
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=1.00 E-value=1 Score=31.16 Aligned_cols=201 Identities=14% Similarity=0.152 Sum_probs=134.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9998579654855348621038825999999996331066-------512589999999999999999999985049999
Q 002631 130 MLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP-------SHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHI 202 (898)
Q Consensus 130 ~L~r~kfLF~LP~~L~~~I~~gdYd~av~dY~kak~L~~~-------~~v~vf~kV~~EVe~ii~~~r~~L~~kL~~~~~ 202 (898)
.-+..+.+-+.|..|.-+|..++|+.||.--.+++.++.. .......-+-.-+++....+...|-+.+.. +.
T Consensus 11 ~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~ 89 (235)
T 2d2s_A 11 TAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SN 89 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CS
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
T ss_conf 10047888716298899999976999999999999998728444565536789999999999999999999999870-58
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 94679999999852799998598999975999999998969989999999768887854214799999873103777654
Q 002631 203 DLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADY 282 (898)
Q Consensus 203 s~~e~~~~I~lLleL~~~~dPiw~~L~~q~~~I~~~l~~~~~~~~~~~e~l~~~l~~~~~s~~~~~~l~~~~~~~~~~~~ 282 (898)
...+..+.|..|..||-.+.-.-.||.++..+|...+..+ .
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l------------------------------------~--- 130 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQI------------------------------------G--- 130 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC----------------------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH------------------------------------C---
T ss_conf 7799999999998879816999999999999999998872------------------------------------1---
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 33358888887898778725677999999999999996103469999888624722455567756655655740233202
Q 002631 283 SVTCGNIQPIDSLPVELSGEEVDAFRGRYIRRLTAVLIHHIPAFWKVALSVFSGKFAKSSQVSSESNLNASGNKAEEKVG 362 (898)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~~ev~~l~~~fi~~L~~vil~~lp~fWklaqs~~~Gk~~k~~~~~~~~~~~~~~~~~~~~~~ 362 (898)
+.+ - ...|+..|+.+.-..+-+ ++..|.. -|.... +.
T Consensus 131 ~~g-------------d--------~~~Yi~~Ls~i~Fs~I~~---t~~~f~~-~F~~~~---------~~--------- 167 (235)
T 2d2s_A 131 SVD-------------N--------PTNYLTQLAVIRFQTIKK---TVEDFQD-IFKELG---------AK--------- 167 (235)
T ss_dssp -CC-------------S--------HHHHHHHHHHHHHHHHHH---HHHHHHH-HSTTCC---------HH---------
T ss_pred CCC-------------C--------HHHHHHHHHHHHHHHHHH---HHHHHHH-HHCCCC---------CC---------
T ss_conf 468-------------7--------899999999999999999---9999999-847898---------43---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5765546379999999999998787744211688767321499999999999998861002489
Q 002631 363 EGKYSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKESA 426 (898)
Q Consensus 363 ~~~~~~~~~~e~~~mi~~~i~~y~~~i~~~f~~l~~~n~~~~yL~~~l~~i~~~~~~L~~~~~~ 426 (898)
-...++.++.+-+..|+..+.--.+. .... |- +|+..+..-|..|...|-.
T Consensus 168 -------~~S~lV~Wa~~eve~f~~l~~rqv~~--~~~l---~~-ecv~i~~~~~~~L~~vGLd 218 (235)
T 2d2s_A 168 -------ISSILVDWCSDEVDNHFKLIDKQLLN--DEML---SP-GSIKSSRKQIDGLKAVGLD 218 (235)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTTC-----C---CH-HHHHHHHHHHHGGGGGTCC
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHCCC--CCCH---HH-HHHHHHHHHHHHHHHCCCC
T ss_conf -------13389999999999999999988357--8659---99-9999999999999876987
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=24.40 Aligned_cols=336 Identities=10% Similarity=0.101 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999999985310033455654-3641113889897554169999999999999999875201344
Q 002631 432 MVLRTLQAEITKIYIGRLCSWMQGSTDGISKDETWI-PVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEA 510 (898)
Q Consensus 432 ~~l~~L~~~~r~~~v~~lca~~~~~ae~~~~lEdW~-~~~~~e~~~~~~~iT~LP~~Fe~~i~~~l~~i~~~~~~~~~E~ 510 (898)
+.++.|..+-..+....+..|+.+..+. ..++|. +...++.+.+-.=.|.+|..+-.++-..++....+.
T Consensus 7 ~~~~~L~~~Y~~~i~~~~~eW~~nil~~--E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~------- 77 (399)
T 2fji_1 7 KEKETLFKDYLNLIVVKMTEWIGNLEKA--EFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTN------- 77 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCC-------
T ss_conf 4599999999999999999999999999--9999884689998699988528864799999999999998479-------
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55135899-89999999999999999999975999864432--113--77543344568889988887678999988987
Q 002631 511 TKSEDMYA-QLLEIQESVRLSFLNRFLDFAGHLEHIASELA--QNK--SNKESQHLQNGYSSDPCTESLSDIPGSVVDPH 585 (898)
Q Consensus 511 ~~~~di~~-~l~~~~~~Vr~~f~~~~~~l~~~le~l~~~~~--~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (898)
..+++. ....+.... ..|+..| ...++...-..- +.. .+.++ + . ++. .....-
T Consensus 78 --~~~l~~~v~~~~~~~L-~~f~~~~---~~~l~~~~~~~~~~~~~~~~~~~~-~----~-~~~----------~~~~~~ 135 (399)
T 2fji_1 78 --QAKILVGVVERFSDLL-TKRQKNW---ISKISEEIKKQINYNHKYDIDPES-I----T-PED----------ECPGGL 135 (399)
T ss_dssp --CHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHTTTTGGGS-C----C-TTT----------CCCSCH
T ss_pred --CCCCHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHCCCCCCCCCCCC-C----C-CCC----------CCCCCH
T ss_conf --7300999999999999-9999999---999999999875201000124222-4----7-654----------565418
Q ss_pred CEEEEEECC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 545200014-06788642799999998600345444335-5418999998999999999897---885667599998732
Q 002631 586 QRLLIVISN-IGYCKDELSSELYNKYKDIWLQSREKDQE-GTDIQDLVMSFSGLEEKVLEQY---TFAKANLIRTAATTF 660 (898)
Q Consensus 586 ~RLLltLSN-~~~l~~~~ip~L~~~fe~~f~~~~~~~~~-~~~~~~~~~~l~qLd~~Lfe~Y---v~~k~~~L~~~I~~g 660 (898)
+--|+.+.| |..+. ..+..|...|+...... ..+. ...+.++.+.|..+-..-.+.- +.....|.-..
T Consensus 136 ~e~liA~~Nn~~~~~-e~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~---- 208 (399)
T 2fji_1 136 VEYLIAVSNDQMKAA-DYAVAISSKYGKLVSKV--YEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQE---- 208 (399)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHTTSCHH--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTT----
T ss_pred HHHHHHHHCCHHHHH-HHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 786566554488899-99999999999862677--88888999999999999999999999999999988999998----
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CH
Q ss_conf 11289988988888741268999999999999998-403033499999999999999999853121034455468---01
Q 002631 661 LLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLD---AN 736 (898)
Q Consensus 661 il~~g~dW~~~~~P~~VRpYv~e~Ll~LV~VHaEV-~sia~~Ll~rvLs~Lve~va~elL~~f~~~~~~~v~~f~---~~ 736 (898)
++ ...|...+ ++..++.++----... ....|++....+..+.+.+..+.++++.. . .+|. ..
T Consensus 209 lf--t~~W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~----~~~~~~~~~ 274 (399)
T 2fji_1 209 IF--SKTWYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-E----HSFKNKNNK 274 (399)
T ss_dssp TT--SGGGTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-C----CCCCCGGGH
T ss_pred HC--CCHHCCCC-------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-C----CCCCCHHHH
T ss_conf 57--70300876-------7999999999999999998086999999999999999999999846-7----777840599
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH------HH---HHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCHHHHHH
Q ss_conf 368999669999983123689148------99---999999999999876888642299----99999989981122563
Q 002631 737 GFCQLMLELDYFETILNPYFTHDA------RE---SLKNLQGVLLEKATVSVAEAVENP----GHHRRPTRGSEDALADE 803 (898)
Q Consensus 737 G~lQAtLDiefl~~tL~~Y~t~~A------~~---~~~~l~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~ 803 (898)
|..|..-|++-+..-+..|.+... .. .+..+.+ |- ++.|+.+.+.- +..-..+..-.-+.-.=
T Consensus 275 ~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~---~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~ 350 (399)
T 2fji_1 275 FLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LS---CEPIDSILDIWQKYLEVYWDSRIDLLVGILKC 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HH---HSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HC---CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999999999998556532025778779999999997-36---89577799999999986899999999999982
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 207888895789999999779999
Q 002631 804 RQQGMTVSPDDLIALAQQYSSELL 827 (898)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~ 827 (898)
|+. ++.++...+.+.| .++.
T Consensus 351 R~D---~~~~~~k~ll~~~-~~~~ 370 (399)
T 2fji_1 351 RKD---VSSSERKKIVQQA-TEML 370 (399)
T ss_dssp CTT---CCHHHHHHHHHHH-HHHH
T ss_pred CCC---CCHHHHHHHHHHH-HHHH
T ss_conf 548---9989999999999-9998
No 5
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=1.00 E-value=1 Score=19.14 Aligned_cols=82 Identities=6% Similarity=0.090 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH--HHH
Q ss_conf 88988888741268999999999999998403033-499999999999999999853121034455468013689--996
Q 002631 667 QWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQ--LML 743 (898)
Q Consensus 667 dW~~~~~P~~VRpYv~e~Ll~LV~VHaEV~sia~~-Ll~rvLs~Lve~va~elL~~f~~~~~~~v~~f~~~G~lQ--AtL 743 (898)
+|...+ ..++||.-.+.=.++--|-=++.+.|+ -+..++..+....-+.+-++|.. +.--+.+|-.. .+-
T Consensus 42 ~Wd~k~--pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~-----~~i~~~~G~q~g~v~~ 114 (141)
T 3n1e_A 42 KYEVKA--PVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSH-----LNVINDGGPQNGLVTA 114 (141)
T ss_dssp TCCCCS--SSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCCSSSSHHHHHHHH
T ss_pred HHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHH
T ss_conf 725589--989989999999999999998832999999999999999999999999998-----6887877630027899
Q ss_pred HHHHHHHHHCCC
Q ss_conf 699999831236
Q 002631 744 ELDYFETILNPY 755 (898)
Q Consensus 744 Diefl~~tL~~Y 755 (898)
|++|+...|..-
T Consensus 115 Dv~ff~~~L~~L 126 (141)
T 3n1e_A 115 DVAFYTGNLQAL 126 (141)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986246
No 6
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=1.00 E-value=1 Score=14.52 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 046754888899877531038987
Q 002631 94 AHLFKLMQGVSSQANRAFEPLFER 117 (898)
Q Consensus 94 ~~L~~~i~~i~~~s~~i~~pLle~ 117 (898)
..|...+.......+.+..=+.+|
T Consensus 23 ~~l~~~~~~g~~~~~el~~f~keR 46 (320)
T 3m3w_A 23 RRTVQRVEDGHRLCGDLVSCFQER 46 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998899999999999999
No 7
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.49 Aligned_cols=30 Identities=37% Similarity=0.561 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHHCCHH
Q ss_conf 8957899999997----79999999854210021
Q 002631 810 VSPDDLIALAQQY----SSELLQAELERTRINTA 839 (898)
Q Consensus 810 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 839 (898)
.-|+|++.-+|++ +++...-||.||-+++-
T Consensus 7 ~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN 40 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKSRSVIIRELQRTNLDVN 40 (53)
T ss_dssp GSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
T ss_conf 0859999999999559848999999998075299
No 8
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=13.92 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 12589999999999999999
Q 002631 171 HVNILKRVLEEVEKVMQEFK 190 (898)
Q Consensus 171 ~v~vf~kV~~EVe~ii~~~r 190 (898)
...++.++-.|+.+.+..+.
T Consensus 24 ~~~l~~~l~EE~~El~eai~ 43 (116)
T 2yxh_A 24 IETLLEALASEIEEVAEAVK 43 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=13.87 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 862103882599999999633--------10665125899999999999999999
Q 002631 145 RGSISKGEFDLAVREYKKAKS--------IALPSHVNILKRVLEEVEKVMQEFKA 191 (898)
Q Consensus 145 ~~~I~~gdYd~av~dY~kak~--------L~~~~~v~vf~kV~~EVe~ii~~~r~ 191 (898)
|++.-.|+||.++..|..+.. +.......-+..++.|+..-.+..|.
T Consensus 20 Re~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~ 74 (78)
T 2rpa_A 20 REYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKD 74 (78)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999965909999999999999999998668989887699999999999999998
No 10
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=13.47 Aligned_cols=156 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98999999999999997402988999995455678574--------4799999995320179998772046754888899
Q 002631 34 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCK--------TTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSS 105 (898)
Q Consensus 34 S~~dL~~gl~~L~r~I~~~s~~Lk~LV~eNf~kFI~ak--------dTId~i~~~~~~~e~~~~~~~t~~L~~~i~~i~~ 105 (898)
++..++.....+...-......|...|.+.+..|..-. ..-..+...+......... ....+..+..
T Consensus 68 aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~-----~~~~l~kaKk 142 (290)
T 3i2w_A 68 AWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAK-----LLAKVEKAKA 142 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_conf 99999999999999899999999988899999999997887676688888887799998789999-----9999999999
Q ss_pred HHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8775310389879999999----999999998579654855348621038825999999996331066512589999999
Q 002631 106 QANRAFEPLFERQAQAEKI----RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALPSHVNILKRVLEE 181 (898)
Q Consensus 106 ~s~~i~~pLle~~~KaekL----r~vl~~L~r~kfLF~LP~~L~~~I~~gdYd~av~dY~kak~L~~~~~v~vf~kV~~E 181 (898)
.-.......-..+.+.++. .....-++|.+--.+--..-.... +++|...|..+++.+.-+......++..+..=
T Consensus 143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a-~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~l 221 (290)
T 3i2w_A 143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKC-REKYEQAIAEITKYNSVYIEDMTSVFEKCQTF 221 (290)
T ss_dssp HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998999998997375778899999999999999999999999-99999999999876289999879999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999998
Q 002631 182 VEKVMQEFKAMLYK 195 (898)
Q Consensus 182 Ve~ii~~~r~~L~~ 195 (898)
.+..+..+|..||.
T Consensus 222 ee~Ri~~lk~~l~~ 235 (290)
T 3i2w_A 222 EKTRLQFFKEILFN 235 (290)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
Done!