Query 002634
Match_columns 898
No_of_seqs 313 out of 527
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2116 Protein involved in pl 100.0 3E-148 7E-153 1237.9 40.5 706 1-897 1-719 (738)
2 COG5083 SMP2 Uncharacterized p 100.0 3.2E-91 6.8E-96 755.0 26.8 231 658-892 327-559 (580)
3 PF08235 LNS2: LNS2 (Lipin/Ned 100.0 2.6E-55 5.6E-60 428.8 15.3 157 711-867 1-157 (157)
4 smart00775 LNS2 LNS2 domain. T 100.0 1.4E-40 3.1E-45 321.7 16.4 156 711-866 1-156 (157)
5 PF04571 Lipin_N: lipin, N-ter 100.0 2E-39 4.4E-44 300.6 7.7 103 1-106 1-107 (110)
6 COG4850 Uncharacterized conser 99.0 3.3E-09 7.2E-14 115.1 11.4 168 675-858 129-308 (373)
7 PHA02530 pseT polynucleotide k 98.9 8.1E-09 1.8E-13 107.4 12.7 134 708-855 157-295 (300)
8 TIGR01675 plant-AP plant acid 98.9 6.7E-09 1.4E-13 108.4 11.7 129 707-857 75-220 (229)
9 TIGR01680 Veg_Stor_Prot vegeta 98.9 9.8E-09 2.1E-13 109.6 11.7 128 708-857 100-247 (275)
10 cd01427 HAD_like Haloacid deha 98.9 1.9E-08 4.2E-13 88.2 10.6 129 711-852 1-136 (139)
11 TIGR01689 EcbF-BcbF capsule bi 98.7 2.1E-08 4.6E-13 96.2 7.8 105 710-824 2-119 (126)
12 PF03767 Acid_phosphat_B: HAD 98.6 8.5E-09 1.8E-13 106.6 0.9 134 707-857 70-220 (229)
13 PRK11009 aphA acid phosphatase 98.5 3.7E-07 8E-12 95.6 10.5 124 709-857 63-212 (237)
14 PF09949 DUF2183: Uncharacteri 98.5 6.4E-07 1.4E-11 83.3 9.4 91 755-858 1-95 (100)
15 TIGR01533 lipo_e_P4 5'-nucleot 98.4 6.6E-07 1.4E-11 95.3 8.4 115 708-847 74-206 (266)
16 TIGR01662 HAD-SF-IIIA HAD-supe 98.3 2.4E-06 5.1E-11 79.1 7.9 117 710-852 1-127 (132)
17 TIGR01672 AphA HAD superfamily 98.2 1.4E-05 3.1E-10 83.9 11.3 123 710-856 64-211 (237)
18 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.1 1.9E-05 4.1E-10 76.6 9.5 108 740-865 83-195 (201)
19 TIGR01656 Histidinol-ppas hist 98.0 2.6E-05 5.6E-10 74.6 9.8 128 710-852 1-141 (147)
20 TIGR00213 GmhB_yaeD D,D-heptos 97.9 6.8E-05 1.5E-09 73.6 10.5 130 710-852 2-146 (176)
21 TIGR01664 DNA-3'-Pase DNA 3'-p 97.9 9.4E-05 2E-09 73.2 11.3 126 708-852 12-158 (166)
22 TIGR00338 serB phosphoserine p 97.8 4E-05 8.7E-10 76.2 6.9 103 740-861 88-196 (219)
23 PLN02954 phosphoserine phospha 97.7 5.4E-05 1.2E-09 75.5 6.6 134 704-851 8-191 (224)
24 TIGR01670 YrbI-phosphatas 3-de 97.7 5.7E-05 1.2E-09 73.3 6.4 120 710-863 2-123 (154)
25 TIGR01261 hisB_Nterm histidino 97.7 0.00026 5.6E-09 70.0 10.5 131 709-853 1-144 (161)
26 TIGR01490 HAD-SF-IB-hyp1 HAD-s 97.7 0.00016 3.4E-09 71.0 8.5 112 740-864 90-202 (202)
27 TIGR01545 YfhB_g-proteo haloac 97.7 9.5E-05 2.1E-09 75.6 7.2 106 740-866 97-208 (210)
28 PRK08942 D,D-heptose 1,7-bisph 97.6 0.00073 1.6E-08 66.4 12.7 127 709-851 3-142 (181)
29 PRK09552 mtnX 2-hydroxy-3-keto 97.6 0.00015 3.3E-09 73.2 7.5 92 739-850 76-181 (219)
30 PRK09484 3-deoxy-D-manno-octul 97.6 0.00023 4.9E-09 71.0 7.9 110 708-851 20-134 (183)
31 TIGR03333 salvage_mtnX 2-hydro 97.5 0.00011 2.4E-09 74.1 5.6 102 739-859 72-182 (214)
32 PRK10976 putative hydrolase; P 97.4 0.00097 2.1E-08 68.6 10.3 54 710-777 3-56 (266)
33 PRK13288 pyrophosphatase PpaX; 97.3 0.00042 9.1E-09 69.1 6.6 92 740-852 85-178 (214)
34 PRK15126 thiamin pyrimidine py 97.3 0.0013 2.8E-08 68.2 9.9 67 709-795 2-68 (272)
35 PRK13582 thrH phosphoserine ph 97.3 0.00082 1.8E-08 66.1 8.0 100 739-861 70-172 (205)
36 TIGR01428 HAD_type_II 2-haloal 97.3 0.0011 2.5E-08 65.1 8.7 100 739-863 94-196 (198)
37 PRK13226 phosphoglycolate phos 97.2 0.0011 2.3E-08 67.7 8.4 94 740-853 98-192 (229)
38 PRK11590 hypothetical protein; 97.2 0.00062 1.3E-08 68.8 6.7 111 740-866 98-209 (211)
39 TIGR01487 SPP-like sucrose-pho 97.2 0.00077 1.7E-08 67.6 6.9 47 710-767 2-48 (215)
40 PRK01158 phosphoglycolate phos 97.2 0.00085 1.9E-08 67.2 7.2 48 710-768 4-51 (230)
41 PRK10513 sugar phosphate phosp 97.2 0.0013 2.9E-08 67.7 8.5 70 709-795 3-72 (270)
42 PF08282 Hydrolase_3: haloacid 97.2 0.00095 2.1E-08 65.4 7.1 50 712-772 1-50 (254)
43 PRK14988 GMP/IMP nucleotidase; 97.2 0.0018 3.8E-08 66.4 9.3 104 739-864 95-200 (224)
44 PRK13222 phosphoglycolate phos 97.2 0.0011 2.5E-08 65.7 7.6 94 739-852 95-189 (226)
45 PF13344 Hydrolase_6: Haloacid 97.2 0.0033 7.2E-08 57.9 10.1 100 712-850 1-100 (101)
46 PRK13478 phosphonoacetaldehyde 97.2 0.0024 5.1E-08 66.5 10.1 95 739-852 103-199 (267)
47 PLN02645 phosphoglycolate phos 97.1 0.0022 4.8E-08 69.0 9.7 107 709-852 28-134 (311)
48 PLN03243 haloacid dehalogenase 97.1 0.0012 2.6E-08 69.7 7.5 92 740-852 112-205 (260)
49 TIGR01422 phosphonatase phosph 97.1 0.0031 6.7E-08 64.8 10.1 94 740-852 102-197 (253)
50 TIGR01488 HAD-SF-IB Haloacid D 97.1 0.00097 2.1E-08 63.7 6.0 99 739-848 75-177 (177)
51 TIGR01663 PNK-3'Pase polynucle 97.1 0.0014 3E-08 76.3 8.2 123 707-849 166-304 (526)
52 TIGR01489 DKMTPPase-SF 2,3-dik 97.1 0.002 4.3E-08 61.8 8.0 100 740-851 75-184 (188)
53 TIGR01681 HAD-SF-IIIC HAD-supe 97.1 0.0051 1.1E-07 58.2 10.6 58 710-767 1-60 (128)
54 PRK11133 serB phosphoserine ph 97.1 0.00092 2E-08 73.1 6.4 127 739-882 183-312 (322)
55 PRK05446 imidazole glycerol-ph 97.0 0.007 1.5E-07 67.5 12.9 135 709-861 2-150 (354)
56 PRK08238 hypothetical protein; 97.0 0.0014 3.1E-08 75.3 7.6 129 708-865 9-171 (479)
57 PF06941 NT5C: 5' nucleotidase 97.0 0.00051 1.1E-08 68.4 3.5 39 739-777 75-117 (191)
58 TIGR03351 PhnX-like phosphonat 97.0 0.0035 7.5E-08 62.6 9.3 96 740-852 90-186 (220)
59 PRK10826 2-deoxyglucose-6-phos 97.0 0.0014 3E-08 65.9 6.3 99 740-859 95-193 (222)
60 TIGR01549 HAD-SF-IA-v1 haloaci 97.0 0.0045 9.7E-08 58.4 9.3 88 740-849 67-154 (154)
61 TIGR01990 bPGM beta-phosphoglu 96.9 0.0013 2.8E-08 63.3 5.5 91 739-852 89-181 (185)
62 TIGR01482 SPP-subfamily Sucros 96.9 0.0015 3.3E-08 65.0 6.2 47 712-769 1-47 (225)
63 TIGR02009 PGMB-YQAB-SF beta-ph 96.9 0.0024 5.1E-08 61.5 7.1 91 739-852 90-182 (185)
64 TIGR01452 PGP_euk phosphoglyco 96.9 0.0095 2.1E-07 62.9 12.2 55 710-776 3-57 (279)
65 COG0561 Cof Predicted hydrolas 96.9 0.002 4.4E-08 66.4 6.9 55 709-777 3-57 (264)
66 TIGR02252 DREG-2 REG-2-like, H 96.9 0.0041 9E-08 61.3 8.5 91 739-852 107-201 (203)
67 PRK03669 mannosyl-3-phosphogly 96.9 0.0027 5.8E-08 66.4 7.5 69 708-795 6-74 (271)
68 TIGR01668 YqeG_hyp_ppase HAD s 96.9 0.0078 1.7E-07 59.5 10.3 115 707-861 23-138 (170)
69 TIGR02726 phenyl_P_delta pheny 96.8 0.0021 4.5E-08 64.6 6.2 110 709-851 7-120 (169)
70 PLN02940 riboflavin kinase 96.8 0.0027 5.8E-08 70.7 7.3 128 740-890 96-227 (382)
71 PRK06769 hypothetical protein; 96.8 0.0068 1.5E-07 60.1 9.4 125 709-853 4-134 (173)
72 PRK10530 pyridoxal phosphate ( 96.8 0.0028 6E-08 65.0 6.8 69 709-797 3-71 (272)
73 PRK10444 UMP phosphatase; Prov 96.8 0.0024 5.2E-08 67.2 6.3 66 710-790 2-67 (248)
74 PTZ00174 phosphomannomutase; P 96.8 0.0032 7E-08 65.3 7.1 47 709-766 5-51 (247)
75 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.7 0.0023 5.1E-08 67.1 5.8 57 710-775 2-59 (257)
76 PRK12702 mannosyl-3-phosphogly 96.7 0.0032 7E-08 69.0 6.8 51 710-771 2-52 (302)
77 COG0241 HisB Histidinol phosph 96.7 0.021 4.6E-07 58.7 12.1 132 708-856 4-149 (181)
78 PLN02770 haloacid dehalogenase 96.7 0.0033 7.3E-08 65.1 6.3 92 740-852 111-204 (248)
79 PLN02779 haloacid dehalogenase 96.6 0.0065 1.4E-07 64.8 8.5 95 739-852 146-242 (286)
80 PRK00192 mannosyl-3-phosphogly 96.6 0.0042 9.1E-08 65.0 6.9 49 708-767 3-51 (273)
81 PRK11587 putative phosphatase; 96.6 0.003 6.5E-08 63.6 5.5 91 740-852 86-178 (218)
82 PRK13223 phosphoglycolate phos 96.6 0.006 1.3E-07 64.5 7.6 94 739-853 103-198 (272)
83 PF12710 HAD: haloacid dehalog 96.5 0.0013 2.9E-08 63.2 2.3 91 744-846 96-192 (192)
84 TIGR02463 MPGP_rel mannosyl-3- 96.5 0.0054 1.2E-07 61.5 6.6 68 711-797 1-68 (221)
85 TIGR00099 Cof-subfamily Cof su 96.5 0.0049 1.1E-07 63.3 6.4 53 711-777 1-53 (256)
86 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.5 0.028 6.1E-07 58.0 12.0 110 708-850 7-116 (242)
87 PF08645 PNK3P: Polynucleotide 96.5 0.0037 8E-08 61.9 5.0 126 710-851 1-151 (159)
88 PRK13225 phosphoglycolate phos 96.4 0.0051 1.1E-07 65.6 6.1 91 740-852 145-235 (273)
89 TIGR01685 MDP-1 magnesium-depe 96.4 0.022 4.7E-07 57.8 10.2 132 709-852 2-153 (174)
90 TIGR02461 osmo_MPG_phos mannos 96.4 0.0066 1.4E-07 62.7 6.5 52 711-777 1-52 (225)
91 TIGR01457 HAD-SF-IIA-hyp2 HAD- 96.4 0.007 1.5E-07 63.2 6.5 56 710-777 2-57 (249)
92 PHA02597 30.2 hypothetical pro 96.3 0.012 2.5E-07 58.2 7.3 93 739-853 76-171 (197)
93 TIGR02137 HSK-PSP phosphoserin 96.2 0.022 4.8E-07 58.4 9.1 121 739-883 70-196 (203)
94 TIGR01486 HAD-SF-IIB-MPGP mann 96.2 0.0087 1.9E-07 61.9 6.2 53 711-777 1-53 (256)
95 PLN02575 haloacid dehalogenase 96.1 0.013 2.8E-07 66.1 7.5 93 740-853 219-313 (381)
96 TIGR01484 HAD-SF-IIB HAD-super 96.1 0.013 2.9E-07 58.0 6.6 48 711-768 1-48 (204)
97 PRK06698 bifunctional 5'-methy 96.1 0.023 5.1E-07 64.2 9.4 91 740-852 333-423 (459)
98 smart00577 CPDc catalytic doma 96.1 0.0075 1.6E-07 58.2 4.6 124 709-854 2-140 (148)
99 PLN02887 hydrolase family prot 96.0 0.011 2.4E-07 69.8 6.7 64 700-777 299-362 (580)
100 COG0546 Gph Predicted phosphat 96.0 0.031 6.6E-07 57.1 8.9 92 739-852 91-185 (220)
101 TIGR01686 FkbH FkbH-like domai 95.8 0.11 2.4E-06 56.3 12.7 121 708-849 2-123 (320)
102 PRK10187 trehalose-6-phosphate 95.5 0.033 7.2E-07 59.0 7.3 53 709-767 14-67 (266)
103 PRK10748 flavin mononucleotide 95.3 0.05 1.1E-06 56.1 7.3 28 831-862 183-211 (238)
104 COG2503 Predicted secreted aci 95.3 0.05 1.1E-06 58.8 7.4 70 708-777 78-163 (274)
105 TIGR01485 SPP_plant-cyano sucr 95.2 0.031 6.6E-07 57.8 5.7 51 710-768 2-52 (249)
106 PRK14502 bifunctional mannosyl 95.2 0.037 8.1E-07 66.5 7.0 51 709-770 416-466 (694)
107 COG0647 NagD Predicted sugar p 95.1 0.1 2.2E-06 56.7 9.4 56 709-776 8-63 (269)
108 PRK10725 fructose-1-P/6-phosph 95.1 0.039 8.5E-07 53.6 5.8 18 835-852 165-182 (188)
109 COG0560 SerB Phosphoserine pho 95.1 0.085 1.8E-06 54.7 8.4 114 739-866 79-193 (212)
110 COG5663 Uncharacterized conser 95.0 0.076 1.7E-06 54.8 7.5 79 753-864 87-167 (194)
111 PLN02919 haloacid dehalogenase 94.6 0.058 1.2E-06 67.6 6.8 92 739-851 163-257 (1057)
112 PLN02423 phosphomannomutase 94.4 0.093 2E-06 55.0 6.8 44 709-764 6-50 (245)
113 COG0637 Predicted phosphatase/ 94.3 0.06 1.3E-06 55.5 5.1 93 740-852 89-182 (221)
114 TIGR01684 viral_ppase viral ph 94.2 0.12 2.6E-06 57.1 7.1 127 702-857 120-254 (301)
115 TIGR01460 HAD-SF-IIA Haloacid 93.9 0.098 2.1E-06 54.3 5.7 53 712-776 1-53 (236)
116 TIGR01456 CECR5 HAD-superfamil 93.8 0.12 2.6E-06 56.3 6.4 52 711-774 2-57 (321)
117 PF11019 DUF2608: Protein of u 93.7 0.56 1.2E-05 50.2 11.0 77 708-787 19-128 (252)
118 TIGR01993 Pyr-5-nucltdase pyri 93.6 0.25 5.4E-06 48.4 7.7 18 835-852 164-181 (184)
119 TIGR01449 PGP_bact 2-phosphogl 93.6 0.25 5.3E-06 48.9 7.7 94 739-853 87-182 (213)
120 PF13419 HAD_2: Haloacid dehal 93.6 0.21 4.6E-06 46.3 6.8 93 739-852 79-173 (176)
121 PRK10563 6-phosphogluconate ph 93.1 0.94 2E-05 45.5 11.0 18 835-852 165-182 (221)
122 PF12689 Acid_PPase: Acid Phos 93.0 0.38 8.3E-06 49.0 8.1 127 709-852 3-147 (169)
123 TIGR02471 sucr_syn_bact_C sucr 92.9 0.11 2.5E-06 53.0 4.2 44 711-767 1-44 (236)
124 PF03031 NIF: NLI interacting 92.7 0.13 2.8E-06 49.5 4.0 64 710-775 1-73 (159)
125 PF05116 S6PP: Sucrose-6F-phos 92.6 0.15 3.3E-06 53.6 4.7 48 709-770 2-52 (247)
126 TIGR01454 AHBA_synth_RP 3-amin 92.2 0.51 1.1E-05 47.0 7.7 96 739-853 77-172 (205)
127 PHA03398 viral phosphatase sup 92.2 0.39 8.5E-06 53.2 7.4 62 703-776 123-184 (303)
128 PRK14501 putative bifunctional 91.8 0.37 8E-06 58.0 7.3 52 708-765 491-543 (726)
129 PLN03017 trehalose-phosphatase 91.7 0.38 8.2E-06 54.5 6.8 58 706-770 108-165 (366)
130 TIGR00685 T6PP trehalose-phosp 91.3 0.41 8.8E-06 49.9 6.1 50 709-764 3-53 (244)
131 PLN02382 probable sucrose-phos 91.1 0.34 7.3E-06 55.1 5.7 53 709-769 9-61 (413)
132 PF09419 PGP_phosphatase: Mito 90.4 2 4.3E-05 44.1 9.8 52 703-764 35-88 (168)
133 TIGR02250 FCP1_euk FCP1-like p 90.2 0.63 1.4E-05 46.3 6.1 68 707-775 4-95 (156)
134 PLN02151 trehalose-phosphatase 89.2 0.66 1.4E-05 52.4 5.9 57 704-767 93-149 (354)
135 COG1778 Low specificity phosph 89.1 0.79 1.7E-05 47.1 5.8 110 708-852 7-122 (170)
136 PRK09456 ?-D-glucose-1-phospha 88.9 1.2 2.7E-05 44.4 7.0 94 739-852 86-181 (199)
137 TIGR01509 HAD-SF-IA-v3 haloaci 88.0 1.9 4E-05 41.3 7.4 92 739-852 87-180 (183)
138 TIGR01544 HAD-SF-IE haloacid d 86.8 3.9 8.4E-05 45.0 9.7 129 739-882 123-260 (277)
139 TIGR02251 HIF-SF_euk Dullard-l 86.5 1.7 3.8E-05 43.1 6.4 64 710-775 2-79 (162)
140 COG1877 OtsB Trehalose-6-phosp 85.7 1.6 3.5E-05 47.6 6.1 54 705-764 14-68 (266)
141 TIGR01511 ATPase-IB1_Cu copper 85.6 4.4 9.5E-05 47.9 10.1 104 709-851 385-488 (562)
142 KOG1615 Phosphoserine phosphat 85.6 1.1 2.4E-05 47.7 4.6 121 739-878 90-217 (227)
143 TIGR02253 CTE7 HAD superfamily 85.5 2.9 6.2E-05 41.8 7.4 91 740-852 97-191 (221)
144 PLN02580 trehalose-phosphatase 85.4 1.5 3.2E-05 50.1 5.9 52 708-766 118-169 (384)
145 COG3700 AphA Acid phosphatase 85.1 3.2 6.8E-05 43.9 7.6 126 709-857 63-212 (237)
146 cd03016 PRX_1cys Peroxiredoxin 84.9 6 0.00013 40.6 9.5 66 711-779 8-82 (203)
147 TIGR01525 ATPase-IB_hvy heavy 84.2 5.3 0.00011 46.9 9.9 103 710-850 365-468 (556)
148 PTZ00445 p36-lilke protein; Pr 83.9 9.7 0.00021 41.0 10.7 147 704-854 38-203 (219)
149 PF02358 Trehalose_PPase: Treh 83.6 1.5 3.3E-05 45.2 4.7 48 713-766 1-49 (235)
150 TIGR02253 CTE7 HAD superfamily 83.0 1.6 3.4E-05 43.7 4.3 16 709-724 2-17 (221)
151 PRK10671 copA copper exporting 82.6 6.8 0.00015 48.3 10.3 86 735-850 648-733 (834)
152 PLN02205 alpha,alpha-trehalose 82.6 2.6 5.6E-05 52.5 6.8 57 708-775 595-652 (854)
153 TIGR01691 enolase-ppase 2,3-di 82.2 3.7 7.9E-05 43.2 6.9 94 739-852 97-192 (220)
154 KOG2914 Predicted haloacid-hal 80.1 8.4 0.00018 41.2 8.7 98 740-852 95-192 (222)
155 COG3769 Predicted hydrolase (H 79.6 2.9 6.3E-05 45.4 5.1 46 707-764 5-50 (274)
156 PRK13190 putative peroxiredoxi 79.5 10 0.00022 39.0 8.9 126 715-884 15-152 (202)
157 PF00702 Hydrolase: haloacid d 79.2 3.7 8.1E-05 40.1 5.4 90 734-849 124-215 (215)
158 PF10307 DUF2410: Hypothetical 78.7 18 0.00038 38.4 10.3 100 734-848 51-152 (197)
159 COG4359 Uncharacterized conser 77.6 1.9 4.2E-05 45.6 3.0 36 739-777 75-110 (220)
160 cd03015 PRX_Typ2cys Peroxiredo 77.1 19 0.00041 35.6 9.6 65 710-777 7-84 (173)
161 TIGR02254 YjjG/YfnB HAD superf 76.0 8.3 0.00018 38.4 6.9 93 739-852 99-194 (224)
162 TIGR02247 HAD-1A3-hyp Epoxide 75.3 8.6 0.00019 38.5 6.8 26 739-764 96-121 (211)
163 TIGR01548 HAD-SF-IA-hyp1 haloa 75.0 1.3 2.8E-05 44.1 1.0 15 710-724 1-15 (197)
164 PLN02811 hydrolase 75.0 13 0.00028 37.9 8.1 96 739-852 80-180 (220)
165 TIGR01512 ATPase-IB2_Cd heavy 72.2 14 0.00031 43.3 8.6 87 734-850 359-446 (536)
166 KOG2630 Enolase-phosphatase E- 70.4 7.7 0.00017 42.3 5.4 50 835-887 125-174 (254)
167 TIGR02245 HAD_IIID1 HAD-superf 70.3 11 0.00023 39.6 6.3 64 706-774 18-81 (195)
168 PRK09449 dUMP phosphatase; Pro 69.6 25 0.00055 35.4 8.7 93 739-852 97-192 (224)
169 TIGR01116 ATPase-IIA1_Ca sarco 69.4 21 0.00045 44.9 9.6 106 734-851 534-652 (917)
170 TIGR02254 YjjG/YfnB HAD superf 68.2 2.6 5.7E-05 41.8 1.4 16 710-725 2-17 (224)
171 TIGR01106 ATPase-IIC_X-K sodiu 65.1 23 0.00051 44.9 9.0 107 734-852 565-708 (997)
172 KOG0207 Cation transport ATPas 64.5 23 0.0005 44.8 8.5 107 708-852 702-810 (951)
173 TIGR01493 HAD-SF-IA-v2 Haloaci 64.3 3 6.6E-05 40.2 0.9 14 711-724 1-14 (175)
174 PRK13189 peroxiredoxin; Provis 64.3 59 0.0013 34.3 10.4 130 713-885 20-162 (222)
175 PRK13599 putative peroxiredoxi 63.8 53 0.0012 34.6 9.9 62 713-777 13-83 (215)
176 PLN03064 alpha,alpha-trehalose 63.8 16 0.00035 46.4 7.1 65 708-775 590-658 (934)
177 cd03017 PRX_BCP Peroxiredoxin 63.6 70 0.0015 29.7 9.7 35 740-777 44-78 (140)
178 PRK09449 dUMP phosphatase; Pro 63.5 3.6 7.9E-05 41.4 1.4 15 710-724 4-18 (224)
179 TIGR01449 PGP_bact 2-phosphogl 63.3 3 6.4E-05 41.4 0.7 13 712-724 1-13 (213)
180 PLN03063 alpha,alpha-trehalose 62.9 17 0.00037 45.1 7.1 62 708-775 506-568 (797)
181 COG4229 Predicted enolase-phos 61.9 18 0.00039 38.6 6.0 134 709-886 4-153 (229)
182 TIGR02247 HAD-1A3-hyp Epoxide 61.7 4.4 9.5E-05 40.6 1.5 15 710-724 3-17 (211)
183 TIGR01497 kdpB K+-transporting 60.9 34 0.00073 42.1 9.0 88 734-851 443-530 (675)
184 PTZ00253 tryparedoxin peroxida 60.8 35 0.00077 34.8 7.8 25 740-764 57-81 (199)
185 TIGR01454 AHBA_synth_RP 3-amin 60.3 3.6 7.8E-05 41.0 0.7 21 841-861 133-157 (205)
186 PF00702 Hydrolase: haloacid d 60.1 5.2 0.00011 39.1 1.7 40 814-857 133-173 (215)
187 TIGR01452 PGP_euk phosphoglyco 59.3 42 0.00092 35.9 8.4 40 706-763 129-168 (279)
188 TIGR01548 HAD-SF-IA-hyp1 haloa 57.8 41 0.0009 33.6 7.6 32 739-770 108-139 (197)
189 TIGR01522 ATPase-IIA2_Ca golgi 55.4 50 0.0011 41.4 9.4 102 735-850 526-638 (884)
190 cd02968 SCO SCO (an acronym fo 55.4 55 0.0012 30.5 7.6 37 741-777 44-84 (142)
191 cd02964 TryX_like_family Trypa 54.2 59 0.0013 30.6 7.6 35 740-776 37-73 (132)
192 PF10340 DUF2424: Protein of u 54.1 84 0.0018 36.4 10.1 147 712-866 156-316 (374)
193 PRK13191 putative peroxiredoxi 53.4 97 0.0021 32.6 9.8 131 712-885 17-160 (215)
194 cd03012 TlpA_like_DipZ_like Tl 53.1 50 0.0011 30.8 6.9 22 740-761 43-64 (126)
195 PF06888 Put_Phosphatase: Puta 52.2 12 0.00026 40.3 3.0 35 740-777 74-110 (234)
196 PF13464 DUF4115: Domain of un 51.8 17 0.00037 32.1 3.4 26 43-76 37-62 (77)
197 TIGR01509 HAD-SF-IA-v3 haloaci 51.8 5.5 0.00012 38.1 0.4 16 711-726 1-16 (183)
198 TIGR03137 AhpC peroxiredoxin. 50.5 81 0.0017 32.1 8.4 53 720-775 24-84 (187)
199 PRK09437 bcp thioredoxin-depen 49.7 1.7E+02 0.0037 28.1 10.1 35 740-777 51-85 (154)
200 PRK11033 zntA zinc/cadmium/mer 48.5 53 0.0012 40.5 8.0 83 735-849 566-648 (741)
201 TIGR01517 ATPase-IIB_Ca plasma 46.4 91 0.002 39.5 9.7 106 734-853 576-694 (941)
202 COG1225 Bcp Peroxiredoxin [Pos 46.3 57 0.0012 33.6 6.5 62 712-776 14-84 (157)
203 PF13419 HAD_2: Haloacid dehal 44.8 9.3 0.0002 35.5 0.7 14 712-725 1-14 (176)
204 PLN02177 glycerol-3-phosphate 43.3 13 0.00029 43.8 1.8 39 813-860 177-215 (497)
205 TIGR01524 ATPase-IIIB_Mg magne 42.9 85 0.0018 39.5 8.6 106 734-852 512-627 (867)
206 TIGR01691 enolase-ppase 2,3-di 42.8 37 0.00081 35.9 4.8 35 710-744 2-45 (220)
207 PRK10530 pyridoxal phosphate ( 42.7 41 0.0009 34.8 5.1 37 813-850 200-236 (272)
208 PRK09456 ?-D-glucose-1-phospha 42.4 14 0.00031 36.9 1.7 15 711-725 2-16 (199)
209 KOG1605 TFIIF-interacting CTD 42.2 12 0.00026 41.0 1.2 70 706-776 86-169 (262)
210 cd03018 PRX_AhpE_like Peroxire 41.8 2.6E+02 0.0057 26.3 9.9 35 740-777 49-83 (149)
211 COG4996 Predicted phosphatase 40.8 99 0.0021 31.9 7.1 92 710-821 1-107 (164)
212 COG1011 Predicted hydrolase (H 40.7 16 0.00035 36.5 1.7 18 708-725 3-20 (229)
213 cd03009 TryX_like_TryX_NRX Try 40.6 1.7E+02 0.0036 27.3 8.3 60 714-775 4-73 (131)
214 TIGR01523 ATPase-IID_K-Na pota 40.3 1.2E+02 0.0027 39.1 9.6 105 734-852 643-770 (1053)
215 KOG2134 Polynucleotide kinase 39.5 27 0.0006 40.6 3.5 55 706-762 72-129 (422)
216 PF08924 DUF1906: Domain of un 37.9 14 0.00031 36.4 0.8 40 744-783 8-53 (136)
217 TIGR01647 ATPase-IIIA_H plasma 37.7 1.6E+02 0.0034 36.6 9.7 104 734-852 439-559 (755)
218 PRK10513 sugar phosphate phosp 37.0 34 0.00073 35.7 3.4 38 813-851 197-234 (270)
219 PF05152 DUF705: Protein of un 36.9 85 0.0019 35.4 6.6 63 703-777 117-179 (297)
220 TIGR01494 ATPase_P-type ATPase 36.7 2.1E+02 0.0045 33.3 10.0 86 734-852 344-431 (499)
221 PF08534 Redoxin: Redoxin; In 36.5 1.4E+02 0.0031 28.1 7.2 35 739-776 48-82 (146)
222 PRK15122 magnesium-transportin 36.5 1.2E+02 0.0027 38.4 8.7 107 734-853 547-663 (903)
223 TIGR01482 SPP-subfamily Sucros 36.4 41 0.00089 33.8 3.8 38 813-851 150-187 (225)
224 cd02970 PRX_like2 Peroxiredoxi 36.3 2.6E+02 0.0056 26.0 8.8 47 740-795 44-90 (149)
225 PRK15126 thiamin pyrimidine py 36.1 38 0.00082 35.6 3.7 39 812-851 188-226 (272)
226 TIGR01459 HAD-SF-IIA-hyp4 HAD- 35.5 29 0.00063 36.1 2.7 94 737-852 138-237 (242)
227 TIGR02463 MPGP_rel mannosyl-3- 35.0 60 0.0013 32.9 4.8 38 813-851 180-217 (221)
228 PRK10976 putative hydrolase; P 34.6 39 0.00085 35.2 3.5 38 813-851 191-228 (266)
229 COG4087 Soluble P-type ATPase 34.3 2E+02 0.0043 29.8 8.0 107 714-864 19-125 (152)
230 TIGR01658 EYA-cons_domain eyes 33.4 53 0.0011 36.5 4.2 44 812-856 214-257 (274)
231 PRK01122 potassium-transportin 33.2 1.9E+02 0.004 36.0 9.2 89 734-852 442-532 (679)
232 PRK01158 phosphoglycolate phos 32.8 43 0.00094 33.8 3.4 39 812-851 157-195 (230)
233 COG2179 Predicted hydrolase of 32.4 1.1E+02 0.0024 32.3 6.1 106 708-852 27-134 (175)
234 PRK03669 mannosyl-3-phosphogly 32.3 47 0.001 35.1 3.7 38 813-851 188-228 (271)
235 COG0020 UppS Undecaprenyl pyro 31.1 33 0.00072 37.4 2.3 37 517-562 170-211 (245)
236 PRK14010 potassium-transportin 31.0 2.5E+02 0.0054 34.9 9.8 89 734-852 438-528 (673)
237 KOG2882 p-Nitrophenyl phosphat 30.7 54 0.0012 37.1 3.9 54 710-778 23-76 (306)
238 TIGR02877 spore_yhbH sporulati 30.2 32 0.00069 39.7 2.1 41 209-258 45-85 (371)
239 KOG3107 Predicted haloacid deh 30.1 63 0.0014 37.8 4.3 65 789-855 374-450 (468)
240 TIGR01486 HAD-SF-IIB-MPGP mann 29.8 54 0.0012 34.3 3.5 38 813-851 177-216 (256)
241 PRK10856 cytoskeletal protein 29.4 39 0.00085 38.1 2.6 27 44-78 291-317 (331)
242 COG2217 ZntA Cation transport 28.5 2.2E+02 0.0048 35.7 8.8 106 711-854 519-626 (713)
243 cd02971 PRX_family Peroxiredox 28.4 4.6E+02 0.0099 24.3 9.1 35 739-776 42-76 (140)
244 PF08282 Hydrolase_3: haloacid 28.3 45 0.00096 33.0 2.5 38 813-851 187-224 (254)
245 PLN03190 aminophospholipid tra 27.8 2.4E+02 0.0052 37.2 9.3 72 807-887 853-942 (1178)
246 TIGR02461 osmo_MPG_phos mannos 27.5 90 0.002 32.7 4.7 40 813-852 182-222 (225)
247 COG0561 Cof Predicted hydrolas 27.1 52 0.0011 34.3 2.9 39 813-852 190-228 (264)
248 cd02966 TlpA_like_family TlpA- 27.1 69 0.0015 27.4 3.2 35 831-867 79-113 (116)
249 TIGR01484 HAD-SF-IIB HAD-super 26.1 83 0.0018 31.4 4.0 38 813-851 164-201 (204)
250 TIGR01487 SPP-like sucrose-pho 25.4 74 0.0016 32.3 3.5 38 813-851 148-185 (215)
251 TIGR01652 ATPase-Plipid phosph 24.7 2.2E+02 0.0048 36.7 8.1 30 734-763 628-657 (1057)
252 TIGR00099 Cof-subfamily Cof su 24.6 79 0.0017 32.8 3.6 38 813-851 189-226 (256)
253 PLN02499 glycerol-3-phosphate 24.0 39 0.00085 40.4 1.4 28 745-776 101-128 (498)
254 PRK15412 thiol:disulfide inter 23.9 3.4E+02 0.0073 27.5 7.9 36 848-886 141-176 (185)
255 COG0474 MgtA Cation transport 23.3 1.8E+02 0.0039 37.0 7.0 139 735-886 545-709 (917)
256 PRK15000 peroxidase; Provision 23.2 7.1E+02 0.015 26.0 10.2 34 740-776 55-88 (200)
257 PRK10517 magnesium-transportin 22.9 2.9E+02 0.0063 35.3 8.6 106 735-853 548-663 (902)
258 PF00578 AhpC-TSA: AhpC/TSA fa 22.9 2.2E+02 0.0048 25.7 5.8 64 711-777 8-80 (124)
259 KOG1618 Predicted phosphatase 21.6 1.1E+02 0.0024 35.3 4.2 73 707-793 33-109 (389)
260 PRK10382 alkyl hydroperoxide r 20.1 3.8E+02 0.0082 27.8 7.4 34 740-776 52-85 (187)
261 PF13701 DDE_Tnp_1_4: Transpos 20.0 90 0.002 36.5 3.3 32 767-798 197-229 (448)
No 1
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-148 Score=1237.90 Aligned_cols=706 Identities=37% Similarity=0.522 Sum_probs=477.7
Q ss_pred CcccccccceeccceecccCCCCCCCCCceEEEEEccCCccccCCceEeccccccccccCccEEEEEECCeeeeeeeeeC
Q 002634 1 MNVVGKVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGSFQSTPWYVRFGKFQGVLKGAEKVVRITVNGVEANFHMYLD 80 (898)
Q Consensus 1 M~~vg~~gs~is~~~ys~~~p~~~lsGAiDvIvV~q~DG~~~ssPfhVRFGk~qgvl~~~eK~V~i~VNg~~~~~~Mklg 80 (898)
|||||||+++|++ +|+.+|| |||||||||||||||||+|+|||||||||||| ||++++|+|+|.|||+.++|+||||
T Consensus 1 M~yVgrv~~~V~~-~y~sInp-atlsGaIDVIVVeQpDG~~~cSPfhVRFGKf~-Vlk~~eK~V~I~VNG~~~d~~MkL~ 77 (738)
T KOG2116|consen 1 MNYVGRVFSSVSK-LYNSINP-ATLSGAIDVIVVEQPDGNLKCSPFHVRFGKFG-VLKPSEKKVDIFVNGVESDLHMKLG 77 (738)
T ss_pred CchhHHHHHHHHH-HhcccCc-ccccCceeEEEEecCCCCcccccceEEeeeee-EeecCCcEEEEEecCEEecceeEec
Confidence 9999999999998 7888899 69999999999999999999999999999995 9999999999999999999999999
Q ss_pred CCceEEEEEeecCCC---CCCCCCCccccCCCCCcccCCCcccccceeeeeecccCCccccccccccccccccccccccc
Q 002634 81 NSGEAYFIREVDSGK---RNEPNESVELTTDDGSFIDSNSDSRNAVEVCRIEHSVSDSGLTRIRDECDSLSADRFQRAES 157 (898)
Q Consensus 81 ~~Gea~Fv~e~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~n~~~~~~~~~~~s~s~~~~~~~e~~s~~~~~~~~~e~ 157 (898)
++||||||+|++++. +..+.++|+.+..-+ +..| --++...+.+++.|.
T Consensus 78 dsGeAfFv~Eted~~e~~p~~L~tsp~~s~~~s----------------------~~~~------~~~s~~~sv~e~~et 129 (738)
T KOG2116|consen 78 DSGEAFFVEETEDDVEDVPDELLTSPILSETTS----------------------DTPG------VDDSPALSVLERQET 129 (738)
T ss_pred CCccEEEEEeccchhhcccchhccCCCCccccC----------------------CCCC------CCCCchhhhhccccc
Confidence 999999999999955 344444444433211 0111 112223668899999
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCccccCCCCceEEEEEecceeeeecccccccccccccccCCccc
Q 002634 158 DGDRRLYEYQDEQSSLEASVEMSDYGSNRYQNLDGKPYREAQGSDSEVILVSVDGHVLTAPVSASEQTTENVQLSTPQFH 237 (898)
Q Consensus 158 d~~rr~y~~~~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~lvs~dgh~ltap~~~~e~~~e~~ql~~pqfh 237 (898)
+..++++++++++.+- .++++ .+.+ +......+..+......+
T Consensus 130 ~~~~~~vd~~~~~~~~-----s~~~~-~~~~-~~~~~~ed~~d~~~~~~~------------------------------ 172 (738)
T KOG2116|consen 130 ESEGSGVDKNKLRRKK-----SSEED-KRGD-ANESEQEDSLDIGQRSDT------------------------------ 172 (738)
T ss_pred cccccccchhhccccc-----ccccc-cccc-cccccccccccccccccc------------------------------
Confidence 9999999999887632 23333 2222 223223333333332221
Q ss_pred cCCCCCCccccCCCCccCCCCccccccccccccCCCccccCCccccCCccccccccccccCCCccccccCcccccccccc
Q 002634 238 LGPGEGAEFCEDNGEFSSSDNVWGDDYISKFNSSTANVECDNNCTTDDDDLASGRQLVCEGEGEHVCQDGETQNIAIKEE 317 (898)
Q Consensus 238 lgpg~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~ 317 (898)
+.|+.||+++.+|++.++ .|+......+. .. .+.+..++-+-.| +
T Consensus 173 ---~~~~~~~~sd~~~~~t~~----~~~~~~~p~s~---s~------l~~~~~~~t~~~~----------------l--- 217 (738)
T KOG2116|consen 173 ---LPGSSFPESDRDNSPTEN----TVLAFVTPRSD---SE------LEKSGSKRTLKSE----------------L--- 217 (738)
T ss_pred ---CCcccccccccccCCCCC----ccccccccccc---cc------cccCccccccccc----------------c---
Confidence 678899999999999988 23222211100 00 0000000000000 0
Q ss_pred CCCCCCCccccchhhhhhhhhhhhhhhhccCCCCCCC--CCcccccccCCCCcccCCCCCCCCCcccccCcccccccccc
Q 002634 318 GPQTGIGSADIKREDVFQSCLELTALAKQVENSPENS--SLEIPASVENSPESHLLGNKTEDGNKTEDVDKTDDAYVYRK 395 (898)
Q Consensus 318 ~~~~~~~~~~~~~~~~f~scl~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (898)
-|-+|++...+..++.+..... .|-.|..-+.. ..-+.+...+|.+- .....
T Consensus 218 ---------------s~~~~~sq~~~~~~s~~~~~~~~~~l~~~~~d~~~-----~~~~~~~~~~t~~~------~~~p~ 271 (738)
T KOG2116|consen 218 ---------------SFSHSLSQRKLSEGSHFQKSNKEDALRRETHDMTR-----RIFLSSKSLETFNA------ATLPI 271 (738)
T ss_pred ---------------ccCCCccccccccccccccccccchhhhccccccc-----cccccccccccccc------cccch
Confidence 1555555554443322211100 11111111000 00000111111110 00111
Q ss_pred CCCCCCCCCCCCC---CCCCCCCccccccccccc-CcccccccccccCCCcccCCcccccccCCCCccccCCC-CCCCCC
Q 002634 396 DDGLSPTCSPCST---SKKSSPDLQVEPDVIEDA-GLDTENVVFDNESIGSVSNETEWKTEQNGTPMAVEGMG-DSLHRP 470 (898)
Q Consensus 396 ~~~~s~~~~~~~~---~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~ 470 (898)
+..+...|.+... +..+.+.-+.| .| +-+ +--.++.... .+-+.+- ..+. .-.+.+ -+.|++
T Consensus 272 ~~~l~~~~~s~~~s~~~s~~~k~~~r~-----~~~G~d-d~~Ld~~~dy--k~~~~~~---~~~~--~~~g~~~~~~~sv 338 (738)
T KOG2116|consen 272 DKKLQGKSDSELASKVDSPSRKKDKRE-----ANDGAD-DLRLDDEGDY--KNADPEN---SVTS--SKWGELSESRQSV 338 (738)
T ss_pred hhhccccccchhhhcccCccccccchh-----hccCcc-ceeecccccc--ccCCccc---cccc--ccccccccccccc
Confidence 1122222222111 11111111111 00 000 0000000000 0000000 0000 000000 111111
Q ss_pred cCcccCCCCcccCCCCCCCCCCCCCCCCCeEEEecCCCcccCCCCchhhHHHHhhcccCHHHhhcCCcccccCCCeEEEe
Q 002634 471 VHKDDCSKSECVEPQGTTSSEGILTPPGKRFEISLCGSELCSGMGSDAAAEAFDAHRISEDEFKSNSASIIKNENLVIRF 550 (898)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~LSLCGgL~~~~~~~e~~~e~F~eh~Vsye~F~~n~p~Ii~dPnLVVrI 550 (898)
.....-+--| .....+.+.+|||+++. ++.++.+++|++ +|.. .|.|++|+||||||
T Consensus 339 ~sk~~ds~~e-------------~~~~~~~~~~~~~~~~~---~~~e~~ke~F~~------~~~~-~~~I~edenLvvrI 395 (738)
T KOG2116|consen 339 KSKGVDSGVE-------------KTMRLASILCSLCLSLG---DGREALKEKFNE------FSQL-EPGIREDENLVVRI 395 (738)
T ss_pred cccccccccc-------------cccchhhhHhhhhccch---hhHHHHHHHhhh------hhhc-ccceecCCCceEEe
Confidence 1111111000 13345677788888864 589999999998 4555 59999999999999
Q ss_pred CCcccchhhhhHHHHHHHhhCCCCCCCCCCcccccccccccccCCCCCcccCCCCCCcEe-CCCCccccccccccCCCCC
Q 002634 551 KERYLTWEKAAPIVLGMAAFGLDVSIDPKDAIPVEQEDTQKSKDNDSGITSTPSGRRWRL-WPIPFRRVKTLEHTSSNSS 629 (898)
Q Consensus 551 ~~kYynW~~AaPlIlsm~aFqkpLp~~~~~~l~~e~~~~~k~k~~~~~~~~~~~~~~W~~-W~~~~rr~~~~~~~~s~ss 629 (898)
+++||||..|||+||+ +||++++++.++++. |.+.+++||+ |+.+....+.. +...
T Consensus 396 ~~~y~~w~~aaP~vl~-----~~l~~~~~~~~~~d~--------------~e~~s~~~~~~~~~s~s~t~~~----~~~~ 452 (738)
T KOG2116|consen 396 GNKYENWTGAAPIVLS-----KPLDKAPVEVIVRDP--------------MESPSGRRTPTSTPSNSKTPDR----SKRF 452 (738)
T ss_pred cceeechhccCCcccc-----CcccccccceeEecc--------------CCCCCCccccccCCCcccCccc----cccc
Confidence 9999999999999999 999999999887552 3334443444 75321111100 0000
Q ss_pred -cccccccCccccCCCCCCCCCccccCCCCcceeEEecCCHHHHHhcCCCCceeeEEEEEEeeecceeEEEEEEEeecCC
Q 002634 630 -SEEVFVDSESGLLNSQESPESTVKIESPHKQLIRTNVPTSEQIASLNLKDGQNMITFSFSTRVLGTQQVEAHLYLWKWN 708 (898)
Q Consensus 630 -see~~~~~e~~~~~~~~~~~~~~~~~~~~~~y~ksLrltSeQL~sLnLk~G~N~V~FsVtT~~qGt~~vea~IYLW~~~ 708 (898)
++.....+.+ .++. + .......+.++++|+||||||||||++||||+|.|+|+|+|+|+|||+|+|+|+||||+|+
T Consensus 453 ~~~~~~~~s~s-~~~~-e-~~~~~sse~~~~qy~rtLrltSEQL~sLnLk~G~N~v~FsisT~~~Gt~~c~~~IYlWkWn 529 (738)
T KOG2116|consen 453 GKEADIASSTS-EQSP-E-ENRSSSSENPRPQYVRTLRLTSEQLKSLNLKDGKNDVVFSISTQYQGTAQCEGNIYLWKWN 529 (738)
T ss_pred ccccCCCCCCc-ccCc-c-ccccCCCCCcchhhhhhcccCHHHHhhcCCccCCceeEEEEEecccceEEEeeEEEEEecC
Confidence 0000000000 0000 0 0111122356789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP 788 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP 788 (898)
+||||||||||||+||++||++|++||||||.|||+||++|++|||||||||||||+||++||.||+|++|+|+.||+||
T Consensus 530 ~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGP 609 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGP 609 (738)
T ss_pred CcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeeec
Q 002634 789 VVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISH 868 (898)
Q Consensus 789 lLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~~ 868 (898)
|+|+||+||.|||||||.|+||+|||+||++|++|||+.+||||||||||++||.+|++||||.+|||||||+|||++++
T Consensus 610 ViLSPd~lf~Al~REVI~RkPe~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP~~RIFtINpkGEv~~e~ 689 (738)
T KOG2116|consen 610 VILSPDSLFAALHREVIERKPEVFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVPLSRIFTINPKGEVIQEL 689 (738)
T ss_pred EEeCCCcchHHHHHHHHHcCchhhhHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCCccceEEECCCceehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-hhhhHHhhhhhcCCCCCchhhccc
Q 002634 869 RIDVK-SYTSLHTLVNDMFPPTSLVEQVRR 897 (898)
Q Consensus 869 ~~~~~-SY~~L~~~Vd~~FPp~~~~e~~~~ 897 (898)
.++.+ ||++|+++|||||||++..+++++
T Consensus 690 ~~~~~~SY~~l~elVd~mFPplS~~~~~~~ 719 (738)
T KOG2116|consen 690 LKTLKSSYVRLNELVDHMFPPLSRSTSDDF 719 (738)
T ss_pred HhhhhhhhhhHHHHHHHhCCCccccccccC
Confidence 99765 999999999999999999988854
No 2
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=100.00 E-value=3.2e-91 Score=754.99 Aligned_cols=231 Identities=47% Similarity=0.810 Sum_probs=222.0
Q ss_pred CcceeEEecCCHHHHHhcCCCCceeeEEEEEEeeecceeEEEEEEEeecCCCeEEEEecCCCcccccccCccCCCCCCCC
Q 002634 658 HKQLIRTNVPTSEQIASLNLKDGQNMITFSFSTRVLGTQQVEAHLYLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDW 737 (898)
Q Consensus 658 ~~~y~ksLrltSeQL~sLnLk~G~N~V~FsVtT~~qGt~~vea~IYLW~~~~KVVISDIDGTITkSD~lGhilP~lGKDW 737 (898)
.+.|.++|||+++||..|||++|.|.+.|.|. -|.+.|++.||||.|+.|+||||||||||+||++||+..++||||
T Consensus 327 ~~d~~~tiklnsdqLr~LnLkyGkn~lkf~V~---g~~a~~t~~ifvwr~n~kiVVsDiDGTITkSD~~Ghv~~miGkdw 403 (580)
T COG5083 327 VTDYNGTIKLNSDQLRNLNLKYGKNLLKFYVE---GGKAIATMYIFVWRNNKKIVVSDIDGTITKSDALGHVKQMIGKDW 403 (580)
T ss_pred eecccceEEcCChHHhcccCccCcceEEEEEc---CCccEEEEEEEEEeCCCcEEEEecCCcEEehhhHHHHHHHhccch
Confidence 46899999999999999999999999999997 346999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHH
Q 002634 738 TQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACL 817 (898)
Q Consensus 738 th~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L 817 (898)
+|.|||+||..|..|||+|+|||+|+.||++.||.||+.+.|+|+.||+|||+|+|++.+.|||||+|.|+||.||++||
T Consensus 404 th~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayL 483 (580)
T COG5083 404 THNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYL 483 (580)
T ss_pred hhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeeecccc-cc-hhhhHHhhhhhcCCCCCch
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRID-VK-SYTSLHTLVNDMFPPTSLV 892 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~~~~~-~~-SY~~L~~~Vd~~FPp~~~~ 892 (898)
++|+.||.. .+|||||||||.|||.+|+.||||++||||||.+|||..+..+. .+ ||..|+++||||||||+..
T Consensus 484 ndl~slf~e-~~PFyAGFGNriTDvisY~~vgIp~SrIFTIn~~gev~~ell~~sy~~sy~~mne~VDhfFPp~s~~ 559 (580)
T COG5083 484 NDLKSLFIE-FDPFYAGFGNRITDVISYSNVGIPKSRIFTINKNGEVHGELLIVSYRSSYKQMNELVDHFFPPLSPK 559 (580)
T ss_pred HHHHHhhCc-CChhhccccccchhheeeccccCChhheEEeccCCcEEEEEEEeehhhHHHHHhhhhhhcCCCCCCc
Confidence 999999975 57999999999999999999999999999999999999998765 44 9999999999999999863
No 3
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=100.00 E-value=2.6e-55 Score=428.79 Aligned_cols=157 Identities=61% Similarity=1.106 Sum_probs=155.1
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCcee
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVV 790 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlL 790 (898)
|||||||||||+||++||++|++|+||+|+||++||++|++|||+||||||||++|+++||.||++++|+|++||+|||+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~ 80 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVL 80 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeee
Q 002634 791 ISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAIS 867 (898)
Q Consensus 791 LSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~ 867 (898)
++|++|+.||+||++.|+|++||++||++|+++||...+|||||||||.+|+.+|+++|||++|||+||++|++++|
T Consensus 81 ~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~rIF~I~~~g~~~~~ 157 (157)
T PF08235_consen 81 LSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKSRIFIINPKGEVKQE 157 (157)
T ss_pred ECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChhhEEEECCCCeEecC
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999875
No 4
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=100.00 E-value=1.4e-40 Score=321.72 Aligned_cols=156 Identities=64% Similarity=1.094 Sum_probs=152.2
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCcee
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVV 790 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlL 790 (898)
+|||||||||+++|++||+++++|++|.++|++++|++++++||+|+|||||+++++..|+.||..+.|.|++||.||++
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li 80 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVL 80 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceee
Q 002634 791 ISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAI 866 (898)
Q Consensus 791 LSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~ 866 (898)
+++++++.++.++++.+++++||+++|++|.++||+...|||+|||||++|+.+|+++|||++|||+|||+|++.+
T Consensus 81 ~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~~~i~~i~~~~~~~~ 156 (157)
T smart00775 81 LSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPPSRIFTINPKGEVHQ 156 (157)
T ss_pred EcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCChhhEEEECCCCcccc
Confidence 9999999999999999999999999999999999988899999999999999999999999999999999999975
No 5
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=100.00 E-value=2e-39 Score=300.60 Aligned_cols=103 Identities=47% Similarity=0.762 Sum_probs=93.0
Q ss_pred Cccc-ccccceeccceecccCCCCCCCCCceEEEEEccCCccccCCceEeccccccccccCccEEEEEECCeeeeeeeee
Q 002634 1 MNVV-GKVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGSFQSTPWYVRFGKFQGVLKGAEKVVRITVNGVEANFHMYL 79 (898)
Q Consensus 1 M~~v-g~~gs~is~~~ys~~~p~~~lsGAiDvIvV~q~DG~~~ssPfhVRFGk~qgvl~~~eK~V~i~VNg~~~~~~Mkl 79 (898)
|||| |++.+.++. +|+.+||+ ||||||||||||||||+|+||||||||||+ ||||+++|+|+|.|||++++++|||
T Consensus 1 M~yv~~~i~~~v~~-~~~~~npa-tlSGAiDVIVV~q~DGs~~sSPFhVRFGk~-~vl~~~ek~V~I~VNG~~~~~~MkL 77 (110)
T PF04571_consen 1 MNYVAGRIFSSVSE-VYNPINPA-TLSGAIDVIVVEQPDGSLKSSPFHVRFGKL-GVLRPREKVVDIEVNGKPVDFHMKL 77 (110)
T ss_pred CceehHhHhhhHHH-HhccCCcc-cccCceeEEEEecCCCCEecCccEEEEcce-eeecccCcEEEEEECCEEcceEEEE
Confidence 9999 889888877 99999995 999999999999999999999999999999 6999999999999999999999999
Q ss_pred CCCceEEEEEeecCCCCC---CCCCCcccc
Q 002634 80 DNSGEAYFIREVDSGKRN---EPNESVELT 106 (898)
Q Consensus 80 g~~Gea~Fv~e~~~~~~~---~~~~~~~~~ 106 (898)
|++|||||+++++++.+. .+.+||+.+
T Consensus 78 g~~GeAfFv~e~~~~~~~vp~~l~tSP~~s 107 (110)
T PF04571_consen 78 GENGEAFFVEETEDDEEEVPDDLATSPIPS 107 (110)
T ss_pred CCCcEEEEEEecCCCcccCcHHHeecCCCC
Confidence 999999999999876433 444555544
No 6
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.3e-09 Score=115.06 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=123.9
Q ss_pred cCCCCceeeEEEEEEeeeccee--EEEEEEEeecCCCeEEEEecCCCcccccccCccCCC-------CCCCCCchHHHHH
Q 002634 675 LNLKDGQNMITFSFSTRVLGTQ--QVEAHLYLWKWNAKIVISDVDGTITKSDVLGQFMPL-------VGKDWTQSGVAKL 745 (898)
Q Consensus 675 LnLk~G~N~V~FsVtT~~qGt~--~vea~IYLW~~~~KVVISDIDGTITkSD~lGhilP~-------lGKDWth~GVAkL 745 (898)
+.+-+|++.|..-+. |.+ .-.+.+-+.+...--+|||||.||-.+++.+..... .-..|+.+||-.+
T Consensus 129 ~~~~~g~~av~lq~e----g~~~~Ae~~~~~v~~~a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~ 204 (373)
T COG4850 129 FPPTKGNHAVRLQSE----GEKIKAEAAPVPVLNRAGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAW 204 (373)
T ss_pred cCCCCCceeEEeecC----CCCcchhcccceeecccceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHH
Confidence 566778877776655 532 123344555666677999999999998887543221 3467889999999
Q ss_pred HHHHHHCC-CeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhC
Q 002634 746 FSAIKENG-YQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLF 824 (898)
Q Consensus 746 y~~I~~NG-YkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LF 824 (898)
|+.+++-| ..|+|||..||..-....+||.. ++||.||++|.--+-++ ..+...-..-|..-|+.|-.-|
T Consensus 205 yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~-----~~~P~GPl~L~~~g~~~----~~i~~sga~rK~~~l~nil~~~ 275 (373)
T COG4850 205 YRALTNLGDAPVFYVSNSPWQLFPTLQEFITN-----RNFPYGPLLLRRWGGVL----DNIIESGAARKGQSLRNILRRY 275 (373)
T ss_pred HHHHHhcCCCCeEEecCChhHhHHHHHHHHhc-----CCCCCCchhHhhcCCcc----cccccchhhhcccHHHHHHHhC
Confidence 99999888 89999999999999999999985 68999999998333222 1133344445888888666667
Q ss_pred CCCCCcEEEEeC-CchhhHHHHHhc-CCCCCCEEEE
Q 002634 825 PSDYNPFYAGFG-NRDTDELSYRKI-GIPKGKIFII 858 (898)
Q Consensus 825 P~~~nPFyAgFG-NR~tDV~aYR~V-GIp~~RIFiI 858 (898)
|.. .|.. .| +..+|..+|.++ --.++||.-|
T Consensus 276 p~~--kfvL-VGDsGE~DpeIYae~v~~fP~RIl~I 308 (373)
T COG4850 276 PDR--KFVL-VGDSGEHDPEIYAEMVRCFPNRILGI 308 (373)
T ss_pred CCc--eEEE-ecCCCCcCHHHHHHHHHhCccceeeE
Confidence 763 5777 66 799999999995 6677776544
No 7
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.93 E-value=8.1e-09 Score=107.44 Aligned_cols=134 Identities=25% Similarity=0.269 Sum_probs=93.6
Q ss_pred CCeEEEEecCCCcccccccCccCCC----CCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPL----VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNA 783 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~----lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~ 783 (898)
..+++++|+||||..... ..|+ ...+-..+|+.++++.++++|++++++|+|+..++..|.+||... +
T Consensus 157 ~~~~~~~D~dgtl~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~-----~ 228 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGG---RSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT-----D 228 (300)
T ss_pred CCCEEEEECCCcCcCCCC---CCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc-----C
Confidence 357999999999998543 2332 222334789999999999999999999999999999999999863 1
Q ss_pred CCCCceeeCC-CCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCE
Q 002634 784 LPNGPVVISP-DGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKI 855 (898)
Q Consensus 784 LP~GPlLLSP-d~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RI 855 (898)
.+--.+.... ..+|| |.....|+.-+.+..+|+++.. +.....++ |||+.+|+.+++++||++-.+
T Consensus 229 ~~f~~i~~~~~~~~~~--~~~~~~kp~p~~~~~~l~~~~~---~~~~~~~~-vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 229 IWFDDLIGRPPDMHFQ--REQGDKRPDDVVKEEIFWEKIA---PKYDVLLA-VDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred CchhhhhCCcchhhhc--ccCCCCCCcHHHHHHHHHHHhc---cCceEEEE-EcCcHHHHHHHHHhCCeEEEe
Confidence 1111122222 23343 4434455566688888887532 12233444 999999999999999987543
No 8
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.92 E-value=6.7e-09 Score=108.41 Aligned_cols=129 Identities=20% Similarity=0.176 Sum_probs=93.8
Q ss_pred CCCeEEEEecCCCccccccc--CccC---CC----------CCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHH
Q 002634 707 WNAKIVISDVDGTITKSDVL--GQFM---PL----------VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTR 771 (898)
Q Consensus 707 ~~~KVVISDIDGTITkSD~l--Ghil---P~----------lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR 771 (898)
.+..+||+|||-|+...-.- .|.. ++ .++..+-+|+.+||++++++|++|+|||||+..++..|.
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~ 154 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATL 154 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 45688999999999864310 1111 12 355556789999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc-HHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 772 SFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP-HEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 772 ~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp-e~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
+||..+ ++|. .+.|+| |...+.+++ -.||.+..+.|.. .+|++ .+-+||..+|. .|-
T Consensus 155 ~nL~~~-----G~~~------~~~LiL--R~~~d~~~~~~~yKs~~R~~l~~---~GYrI-v~~iGDq~sDl-----~G~ 212 (229)
T TIGR01675 155 DNLINA-----GFTG------WKHLIL--RGLEDSNKTVVTYKSEVRKSLME---EGYRI-WGNIGDQWSDL-----LGS 212 (229)
T ss_pred HHHHHc-----CCCC------cCeeee--cCCCCCCchHhHHHHHHHHHHHh---CCceE-EEEECCChHHh-----cCC
Confidence 999974 5652 245555 543344444 4579999888875 46654 55699988888 466
Q ss_pred CCC-CEEE
Q 002634 851 PKG-KIFI 857 (898)
Q Consensus 851 p~~-RIFi 857 (898)
+.. |+|-
T Consensus 213 ~~~~RtFK 220 (229)
T TIGR01675 213 PPGRRTFK 220 (229)
T ss_pred CccCceee
Confidence 665 8875
No 9
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.89 E-value=9.8e-09 Score=109.64 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=89.5
Q ss_pred CCeEEEEecCCCcccc-cccC-cc---CCCCCCCCC-----------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHH
Q 002634 708 NAKIVISDVDGTITKS-DVLG-QF---MPLVGKDWT-----------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTR 771 (898)
Q Consensus 708 ~~KVVISDIDGTITkS-D~lG-hi---lP~lGKDWt-----------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR 771 (898)
+..+||+|||+|+... .... |. -++-.+.|. -+|+.+||+.++++|++|+|||+|+..++..|.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 4579999999999842 1111 11 122222343 689999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccC--cHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcC
Q 002634 772 SFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRA--PHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIG 849 (898)
Q Consensus 772 ~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rk--pe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VG 849 (898)
+||++ .++|. ++.|+| |...+.++ .-.+|.+..+.+.. .+|++ .+.+||.-+|. .|
T Consensus 180 ~NL~k-----aGy~~------~~~LiL--R~~~D~~~~~av~yKs~~R~~li~---eGYrI-v~~iGDq~sDl-----~G 237 (275)
T TIGR01680 180 ANLKK-----AGYHT------WEKLIL--KDPQDNSAENAVEYKTAARAKLIQ---EGYNI-VGIIGDQWNDL-----KG 237 (275)
T ss_pred HHHHH-----cCCCC------cceeee--cCCCCCccchhHHHHHHHHHHHHH---cCceE-EEEECCCHHhc-----cC
Confidence 99997 36652 355665 54444443 33478887777665 46665 45599999987 46
Q ss_pred CCC--CCEEE
Q 002634 850 IPK--GKIFI 857 (898)
Q Consensus 850 Ip~--~RIFi 857 (898)
-+. .|.|-
T Consensus 238 ~~~g~~RtFK 247 (275)
T TIGR01680 238 EHRGAIRSFK 247 (275)
T ss_pred CCccCcceec
Confidence 654 47664
No 10
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.86 E-value=1.9e-08 Score=88.15 Aligned_cols=129 Identities=19% Similarity=0.099 Sum_probs=78.6
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCcee
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVV 790 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlL 790 (898)
++|||+||||+..+...+. .......+++.++++.++++|++++.+|+|. ...++.|+..+ +..-+...++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~~~---~~~~~~~~i~ 71 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLEEL---GLDDYFDPVI 71 (139)
T ss_pred CeEEccCCceEccCccccc---cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHHHc---CCchhhhhee
Confidence 5899999999997654332 3445568999999999999999999999999 56667777653 1111222222
Q ss_pred eCCCCCCc-------chhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 791 ISPDGLFP-------SLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 791 LSPd~Lf~-------ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
.+.+.... ..+...+..+|...+...+.+.. ......+++ |||+.+|+.+.+.+|++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-igD~~~d~~~~~~~g~~~ 136 (139)
T cd01427 72 TSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLL---GVDPEEVLM-VGDSLNDIEMAKAAGGLG 136 (139)
T ss_pred ccchhhhhcccccccccccccccCCCCHHHHHHHHHHc---CCChhhEEE-eCCCHHHHHHHHHcCCce
Confidence 22111000 00011122244433443333222 222344555 999999999999998864
No 11
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.75 E-value=2.1e-08 Score=96.21 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=71.4
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHH------------HHHHHHHHh
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAY------------LTRSFLLNL 777 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd------------~TR~wL~~v 777 (898)
|+|++||||||...+ .+ +|. .+-.++.+.+.+++++++|+.|+++|||+..... .|.+||++
T Consensus 2 K~i~~DiDGTL~~~~-~~---~y~-~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k- 75 (126)
T TIGR01689 2 KRLVMDLDNTITLTE-NG---DYA-NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQ- 75 (126)
T ss_pred CEEEEeCCCCcccCC-CC---ccc-ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHH-
Confidence 689999999998642 11 222 1346789999999999999999999999999877 99999997
Q ss_pred hhCCCCCCCCceeeCCCC-CCcchhhhhcccCcHHHHHHHHHHHHHhC
Q 002634 778 KQDGNALPNGPVVISPDG-LFPSLFREVIRRAPHEFKIACLEDIKKLF 824 (898)
Q Consensus 778 ~Q~G~~LP~GPlLLSPd~-Lf~ALrREvi~Rkpe~FKie~L~dIr~LF 824 (898)
+++|--.|++.... ...-|....-.=+|.+|..--...|+.|.
T Consensus 76 ----~~ipYd~l~~~kp~~~~~~~~~dD~~ir~~~~~~~~~~~~~~~~ 119 (126)
T TIGR01689 76 ----HNVPYDEIYVGKPWCGHDGFYVDDRAIRPSEFSSLTYDEINTLT 119 (126)
T ss_pred ----cCCCCceEEeCCCcCCCCCceecchhhCHHHHHhcCHHHHHHHH
Confidence 57776666665310 00001111111145666655566777765
No 12
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.62 E-value=8.5e-09 Score=106.60 Aligned_cols=134 Identities=20% Similarity=0.283 Sum_probs=88.5
Q ss_pred CCCeEEEEecCCCccccccc-C-ccC---CC----------CCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHH
Q 002634 707 WNAKIVISDVDGTITKSDVL-G-QFM---PL----------VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTR 771 (898)
Q Consensus 707 ~~~KVVISDIDGTITkSD~l-G-hil---P~----------lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR 771 (898)
..+.+||+|||+|+..+-.. + +++ ++ -+++..-+|+.+||+.++++|.+|+|+|+|+..++..|.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~ 149 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATE 149 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHH
Confidence 56789999999998743111 1 111 11 234444689999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhc--ccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcC
Q 002634 772 SFLLNLKQDGNALPNGPVVISPDGLFPSLFREVI--RRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIG 849 (898)
Q Consensus 772 ~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi--~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VG 849 (898)
.+|+.. ++|. .+.|++ |.... ......+|.+....|.. .+|.+ .+=|||..+|....+..|
T Consensus 150 ~nL~~~-----G~~~------~~~l~l--r~~~~~~~~~~~~yK~~~r~~i~~---~Gy~I-i~~iGD~~~D~~~~~~~~ 212 (229)
T PF03767_consen 150 KNLKKA-----GFPG------WDHLIL--RPDKDPSKKSAVEYKSERRKEIEK---KGYRI-IANIGDQLSDFSGAKTAG 212 (229)
T ss_dssp HHHHHH-----TTST------BSCGEE--EEESSTSS------SHHHHHHHHH---TTEEE-EEEEESSGGGCHCTHHHH
T ss_pred HHHHHc-----CCCc------cchhcc--ccccccccccccccchHHHHHHHH---cCCcE-EEEeCCCHHHhhcccccc
Confidence 999986 2332 234443 33322 22345689999999987 34554 555999999998844333
Q ss_pred CCCCCEEE
Q 002634 850 IPKGKIFI 857 (898)
Q Consensus 850 Ip~~RIFi 857 (898)
-...|.|.
T Consensus 213 ~~~~r~f~ 220 (229)
T PF03767_consen 213 ARAERWFK 220 (229)
T ss_dssp HHHTTEEE
T ss_pred cccceEEE
Confidence 32255544
No 13
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.54 E-value=3.7e-07 Score=95.64 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=84.1
Q ss_pred CeEEEEecCCCcccccc---cC-ccC-C----CC------------CCCC--CchHHHHHHHHHHHCCCeEEEEccChhh
Q 002634 709 AKIVISDVDGTITKSDV---LG-QFM-P----LV------------GKDW--TQSGVAKLFSAIKENGYQLLFLSARAIV 765 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~---lG-hil-P----~l------------GKDW--th~GVAkLy~~I~~NGYkILYLSARpig 765 (898)
+.+|++||||||+.|.. .| +.. | |+ .... +.+|+.+|++.++++|++|.|+|+|+..
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~ 142 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT 142 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 34899999999998632 11 111 1 10 0111 2457999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhCCCCCCCC---ceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhH
Q 002634 766 QAYLTRSFLLNLKQDGNALPNG---PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDE 842 (898)
Q Consensus 766 qAd~TR~wL~~v~Q~G~~LP~G---PlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV 842 (898)
..+.|..||.+. .+||.- ++++..+. ..|+. |.+++++. + ..+. +||+..|+
T Consensus 143 k~~~t~~~Llk~----~gip~~~~f~vil~gd~----------~~K~~--K~~~l~~~------~--i~I~-IGDs~~Di 197 (237)
T PRK11009 143 KTETVSKTLADD----FHIPADNMNPVIFAGDK----------PGQYT--KTQWLKKK------N--IRIF-YGDSDNDI 197 (237)
T ss_pred ccHHHHHHHHHH----cCCCcccceeEEEcCCC----------CCCCC--HHHHHHhc------C--CeEE-EcCCHHHH
Confidence 888899998863 577643 33332221 13344 55555432 1 1233 89999999
Q ss_pred HHHHhcCCCCCCEEE
Q 002634 843 LSYRKIGIPKGKIFI 857 (898)
Q Consensus 843 ~aYR~VGIp~~RIFi 857 (898)
.+-+++|+.+-+++-
T Consensus 198 ~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 198 TAAREAGARGIRILR 212 (237)
T ss_pred HHHHHcCCcEEEEec
Confidence 999999999887754
No 14
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=98.49 E-value=6.4e-07 Score=83.26 Aligned_cols=91 Identities=25% Similarity=0.422 Sum_probs=72.6
Q ss_pred eEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCC-CCcchhhhhcccCcH-HHHHHHHHHHHHhCCCCCCcEE
Q 002634 755 QLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDG-LFPSLFREVIRRAPH-EFKIACLEDIKKLFPSDYNPFY 832 (898)
Q Consensus 755 kILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~-Lf~ALrREvi~Rkpe-~FKie~L~dIr~LFP~~~nPFy 832 (898)
+|+|||+.||.+....++||.. ++||.||++|..-+ .+.. .-+... ..|...|++|.+.||. .+|+
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~-----~~~P~G~~~Lr~~~~~~~~-----~~~~~~~~~K~~~i~~i~~~fP~--~kfi 68 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRR-----NGFPAGPLLLRDYGPSLSG-----LFKSGAEEHKRDNIERILRDFPE--RKFI 68 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHh-----cCCCCCceEcccCCccccc-----cccCCchhHHHHHHHHHHHHCCC--CcEE
Confidence 5899999999999999999996 68999999998752 1211 112222 4799999999999997 4677
Q ss_pred EEeC-CchhhHHHHHhc-CCCCCCEEEE
Q 002634 833 AGFG-NRDTDELSYRKI-GIPKGKIFII 858 (898)
Q Consensus 833 AgFG-NR~tDV~aYR~V-GIp~~RIFiI 858 (898)
. +| |.++|+.+|.++ ---++||-.|
T Consensus 69 L-IGDsgq~DpeiY~~ia~~~P~~i~ai 95 (100)
T PF09949_consen 69 L-IGDSGQHDPEIYAEIARRFPGRILAI 95 (100)
T ss_pred E-EeeCCCcCHHHHHHHHHHCCCCEEEE
Confidence 7 77 799999999996 6777887655
No 15
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.41 E-value=6.6e-07 Score=95.27 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=82.7
Q ss_pred CCeEEEEecCCCccccccc-----CccCCCCCCCCC----------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHH
Q 002634 708 NAKIVISDVDGTITKSDVL-----GQFMPLVGKDWT----------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRS 772 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~l-----GhilP~lGKDWt----------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~ 772 (898)
.+.+||+|||+|+..+..- -+..||-.++|. -+|+.++++.++++|++++|+|+|+..++..|..
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~ 153 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK 153 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence 4689999999999876521 133455455663 4799999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCC---CceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHh
Q 002634 773 FLLNLKQDGNALPN---GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRK 847 (898)
Q Consensus 773 wL~~v~Q~G~~LP~---GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~ 847 (898)
+|.. .+||. -+|++..+. + .|-..+..|.. +++. ++-|||+..|......
T Consensus 154 ~Lkk-----~Gi~~~~~d~lllr~~~------------~---~K~~rr~~I~~----~y~I-vl~vGD~~~Df~~~~~ 206 (266)
T TIGR01533 154 NLKR-----FGFPQADEEHLLLKKDK------------S---SKESRRQKVQK----DYEI-VLLFGDNLLDFDDFFY 206 (266)
T ss_pred HHHH-----cCcCCCCcceEEeCCCC------------C---CcHHHHHHHHh----cCCE-EEEECCCHHHhhhhhc
Confidence 9987 45653 345544321 1 25455556653 4554 4559999999976544
No 16
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.28 E-value=2.4e-06 Score=79.09 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=71.8
Q ss_pred eEEEEecCCCcccccccCccCCCCC---CCCCchHHHHHHHHHHHCCCeEEEEccChhhH-----HHHHHHHHHHhhhCC
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVG---KDWTQSGVAKLFSAIKENGYQLLFLSARAIVQ-----AYLTRSFLLNLKQDG 781 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lG---KDWth~GVAkLy~~I~~NGYkILYLSARpigq-----Ad~TR~wL~~v~Q~G 781 (898)
|+|+||+||||+.+ .++.. .-...+|+.++++.+++.||++..+|.++... ...++.+|..+
T Consensus 1 k~~~~D~dgtL~~~------~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~---- 70 (132)
T TIGR01662 1 KGVVLDLDGTLTDD------VPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL---- 70 (132)
T ss_pred CEEEEeCCCceecC------CCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC----
Confidence 68999999999953 23332 12246899999999999999999999998544 34455566653
Q ss_pred CCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCC-CCCCcEEEEeCC-chhhHHHHHhcCCCC
Q 002634 782 NALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFP-SDYNPFYAGFGN-RDTDELSYRKIGIPK 852 (898)
Q Consensus 782 ~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP-~~~nPFyAgFGN-R~tDV~aYR~VGIp~ 852 (898)
+++. .. .+.. . ..+|| |-+.+..+...++ -...-.+. +|| ...|+.+-+++|+..
T Consensus 71 -~l~~---~~----~~~~-~---~~~KP---~~~~~~~~~~~~~~~~~~~~v~-IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 71 -GVPI---DV----LYAC-P---HCRKP---KPGMFLEALKRFNEIDPEESVY-VGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred -CCCE---EE----EEEC-C---CCCCC---ChHHHHHHHHHcCCCChhheEE-EcCCCcccHHHHHHCCCeE
Confidence 3321 11 0110 0 12344 2233333333331 11122333 799 599999999999975
No 17
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.15 E-value=1.4e-05 Score=83.87 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=76.5
Q ss_pred eEEEEecCCCcccccc---cCccCCC-------CCCC-CC------------chHHHHHHHHHHHCCCeEEEEccChhhH
Q 002634 710 KIVISDVDGTITKSDV---LGQFMPL-------VGKD-WT------------QSGVAKLFSAIKENGYQLLFLSARAIVQ 766 (898)
Q Consensus 710 KVVISDIDGTITkSD~---lGhilP~-------lGKD-Wt------------h~GVAkLy~~I~~NGYkILYLSARpigq 766 (898)
-+|||||||||.+|.. .|.-.+- .|.. |. .+++.+|+..++++|+++.|+|+|....
T Consensus 64 ~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k 143 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGK 143 (237)
T ss_pred eEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4899999999999987 4422110 1111 21 2359999999999999999999996542
Q ss_pred HH-HHHHHHHHhhhCCCCCCCC-ceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHH
Q 002634 767 AY-LTRSFLLNLKQDGNALPNG-PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELS 844 (898)
Q Consensus 767 Ad-~TR~wL~~v~Q~G~~LP~G-PlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~a 844 (898)
.. .++..|+. .+||.- ++++..+. ...++|+ |..++++. +..+. |||+.+|+.+
T Consensus 144 ~~~~a~~ll~~-----lGi~~~f~~i~~~d~--------~~~~Kp~--~~~~l~~~--------~i~i~-vGDs~~DI~a 199 (237)
T TIGR01672 144 TDTVSKTLAKN-----FHIPAMNPVIFAGDK--------PGQYQYT--KTQWIQDK--------NIRIH-YGDSDNDITA 199 (237)
T ss_pred CHHHHHHHHHH-----hCCchheeEEECCCC--------CCCCCCC--HHHHHHhC--------CCeEE-EeCCHHHHHH
Confidence 33 33333332 345431 23332221 1224565 44444321 22333 8999999999
Q ss_pred HHhcCCCCCCEE
Q 002634 845 YRKIGIPKGKIF 856 (898)
Q Consensus 845 YR~VGIp~~RIF 856 (898)
-+++|+.+-++.
T Consensus 200 Ak~AGi~~I~V~ 211 (237)
T TIGR01672 200 AKEAGARGIRIL 211 (237)
T ss_pred HHHCCCCEEEEE
Confidence 999999987774
No 18
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.07 E-value=1.9e-05 Score=76.59 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC--CceeeCCCCCCcchhhhh---cccCcHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN--GPVVISPDGLFPSLFREV---IRRAPHEFKI 814 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~--GPlLLSPd~Lf~ALrREv---i~Rkpe~FKi 814 (898)
+|+.++++.++++||++..+|+...... +.+|+.+ ++.. +-.++..+.-+. ..+. ....+ |.
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~---~~~l~~~-----g~~~~~~~~~~~~~~g~~--~p~~~~~~~~~~---k~ 149 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLA---KKVAEKL-----NPDYVYSNELVFDEKGFI--QPDGIVRVTFDN---KG 149 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHH---HHHHHHh-----CCCeEEEEEEEEcCCCeE--ecceeeEEcccc---HH
Confidence 5888999999999999999999865443 4444433 1110 000000000000 0000 00011 44
Q ss_pred HHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCcee
Q 002634 815 ACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVA 865 (898)
Q Consensus 815 e~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~ 865 (898)
+.++.+...+.-.....++ +||+.+|+.+.+.+|++ |.+|+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~i~-iGDs~~D~~~a~~ag~~----~a~~~~~~~~ 195 (201)
T TIGR01491 150 EAVERLKRELNPSLTETVA-VGDSKNDLPMFEVADIS----ISLGDEGHAD 195 (201)
T ss_pred HHHHHHHHHhCCCHHHEEE-EcCCHhHHHHHHhcCCe----EEECCCccch
Confidence 4455444332211223455 89999999999999995 7899988874
No 19
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.04 E-value=2.6e-05 Score=74.58 Aligned_cols=128 Identities=19% Similarity=0.301 Sum_probs=73.0
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCC-CchHHHHHHHHHHHCCCeEEEEccChhh------------HHHHHHHHHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDW-TQSGVAKLFSAIKENGYQLLFLSARAIV------------QAYLTRSFLLN 776 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDW-th~GVAkLy~~I~~NGYkILYLSARpig------------qAd~TR~wL~~ 776 (898)
+++|+|+||||+.-... .... ...+| ..+|+.+++..|+++||++..+|+.+.. ....++..|+.
T Consensus 1 ~~~~~d~dgtl~~~~~~-~~~~-~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (147)
T TIGR01656 1 PALFLDRDGVINEDTVS-DYPR-SLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQ 78 (147)
T ss_pred CeEEEeCCCceeccCCc-ccCC-CHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHh
Confidence 58999999999984321 1111 12233 3789999999999999999999997631 12345555554
Q ss_pred hhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 777 LKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 777 v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+ +|+.=...... ... ....-.+||+ .+.+..+...++-...-.+. +||+..|+.+=+++|+..
T Consensus 79 ~-----~l~~~~~~~~~--~~~--~~~~~~~KP~---~~~~~~~~~~~~~~~~e~i~-IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 79 L-----GVAVDGVLFCP--HHP--ADNCSCRKPK---PGLILEALKRLGVDASRSLV-VGDRLRDLQAARNAGLAA 141 (147)
T ss_pred C-----CCceeEEEECC--CCC--CCCCCCCCCC---HHHHHHHHHHcCCChHHEEE-EcCCHHHHHHHHHCCCCE
Confidence 2 33210011110 000 0011123453 33333333333322223444 799999999999999964
No 20
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.92 E-value=6.8e-05 Score=73.58 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=74.0
Q ss_pred eEEEEecCCCcccccccCccCCCCC--CCC-CchHHHHHHHHHHHCCCeEEEEccChh--------hHHHHHHHHHHHhh
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVG--KDW-TQSGVAKLFSAIKENGYQLLFLSARAI--------VQAYLTRSFLLNLK 778 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lG--KDW-th~GVAkLy~~I~~NGYkILYLSARpi--------gqAd~TR~wL~~v~ 778 (898)
|++.+|.||||+.. .+++. .+| .-+|+.++++.|+++||++..+|+-+. ...+..+.|+.++-
T Consensus 2 ~~~~~D~Dgtl~~~------~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l 75 (176)
T TIGR00213 2 KAIFLDRDGTINID------HGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL 75 (176)
T ss_pred CEEEEeCCCCEeCC------CCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH
Confidence 78999999999962 14433 255 368999999999999999999997663 12234455655532
Q ss_pred hCCCCCCCCceeeCCCCCCc--chhhhhcccCcH--HHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 779 QDGNALPNGPVVISPDGLFP--SLFREVIRRAPH--EFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 779 Q~G~~LP~GPlLLSPd~Lf~--ALrREvi~Rkpe--~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+. .+++.--+..++..... -+......+||+ .|+.. ++++. -...-.+. +||+.+|+.+-+++|++.
T Consensus 76 ~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a-~~~~~----~~~~~~v~-VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 76 AE-RDVDLDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQA-RKELH----IDMAQSYM-VGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred HH-cCCCccEEEECCCCCcccccccCCCCCCCCCHHHHHHH-HHHcC----cChhhEEE-EcCCHHHHHHHHHCCCcE
Confidence 21 12221112222111000 000122234553 33322 22221 11222344 899999999999999974
No 21
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.91 E-value=9.4e-05 Score=73.18 Aligned_cols=126 Identities=18% Similarity=0.394 Sum_probs=78.3
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCC--chHHHHHHHHHHHCCCeEEEEccChhh---------HHHHHHHHHHH
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWT--QSGVAKLFSAIKENGYQLLFLSARAIV---------QAYLTRSFLLN 776 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWt--h~GVAkLy~~I~~NGYkILYLSARpig---------qAd~TR~wL~~ 776 (898)
..|++++|+||||+..+. .+..+.--.||. .+||.++++.|+++||++..+|..+.. ....++..|..
T Consensus 12 ~~k~~~~D~Dgtl~~~~~-~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~ 90 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRS-GKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEK 90 (166)
T ss_pred cCcEEEEeCCCceEecCC-CCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHH
Confidence 479999999999998542 223444667895 699999999999999999999976542 22345566665
Q ss_pred hhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHHHHHHHHhCCCCCCcEEEEeCCch--------hhHHHHH
Q 002634 777 LKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIACLEDIKKLFPSDYNPFYAGFGNRD--------TDELSYR 846 (898)
Q Consensus 777 v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~L~dIr~LFP~~~nPFyAgFGNR~--------tDV~aYR 846 (898)
+ +++.- ..+..+ ....+|| +.|+. +++.+.....+ .+.+| +||+. +|+.+=+
T Consensus 91 ~-----gl~~~-~ii~~~--------~~~~~KP~p~~~~~-~~~~~~~~~~~-~~~v~--VGD~~~~~~~~~~~Di~aA~ 152 (166)
T TIGR01664 91 L-----KVPIQ-VLAATH--------AGLYRKPMTGMWEY-LQSQYNSPIKM-TRSFY--VGDAAGRKLDFSDADIKFAK 152 (166)
T ss_pred c-----CCCEE-EEEecC--------CCCCCCCccHHHHH-HHHHcCCCCCc-hhcEE--EECCCCCCCCCchhHHHHHH
Confidence 3 44431 222221 1123454 34442 22222100112 23455 57875 6999999
Q ss_pred hcCCCC
Q 002634 847 KIGIPK 852 (898)
Q Consensus 847 ~VGIp~ 852 (898)
++|++.
T Consensus 153 ~aGi~~ 158 (166)
T TIGR01664 153 NLGLEF 158 (166)
T ss_pred HCCCCc
Confidence 999986
No 22
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.81 E-value=4e-05 Score=76.18 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC---CceeeCCCCCCcc-hhhhhcc--cCcHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN---GPVVISPDGLFPS-LFREVIR--RAPHEFK 813 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~---GPlLLSPd~Lf~A-LrREvi~--Rkpe~FK 813 (898)
+|+.++++.++++|+++..+|+-.. ...+.++..+ +++. ..+.. .++.+.. ....... .||..|+
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~---~~~~~~l~~~-----~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~ 158 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFD---LFAEHVKDKL-----GLDAAFANRLEV-EDGKLTGLVEGPIVDASYKGKTLL 158 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcH---HHHHHHHHHc-----CCCceEeeEEEE-ECCEEEEEecCcccCCcccHHHHH
Confidence 5889999999999999999999653 4444455432 2221 00000 0111100 0001011 1344333
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCC
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPK 861 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpk 861 (898)
.+...+.-...-.++ +||..+|+.+.+++|++ +.+|+.
T Consensus 159 -----~~~~~~~~~~~~~i~-iGDs~~Di~aa~~ag~~----i~~~~~ 196 (219)
T TIGR00338 159 -----ILLRKEGISPENTVA-VGDGANDLSMIKAAGLG----IAFNAK 196 (219)
T ss_pred -----HHHHHcCCCHHHEEE-EECCHHHHHHHHhCCCe----EEeCCC
Confidence 332222112223444 89999999999999997 356764
No 23
>PLN02954 phosphoserine phosphatase
Probab=97.74 E-value=5.4e-05 Score=75.54 Aligned_cols=134 Identities=19% Similarity=0.279 Sum_probs=75.8
Q ss_pred eecCCCeEEEEecCCCcccccccCccC---------------------CC----------CCCCC-------------Cc
Q 002634 704 LWKWNAKIVISDVDGTITKSDVLGQFM---------------------PL----------VGKDW-------------TQ 739 (898)
Q Consensus 704 LW~~~~KVVISDIDGTITkSD~lGhil---------------------P~----------lGKDW-------------th 739 (898)
||.. .|+||||.||||++++..-.++ ++ +...+ ..
T Consensus 8 ~~~~-~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (224)
T PLN02954 8 LWRS-ADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLS 86 (224)
T ss_pred HHcc-CCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 4544 7999999999999988642211 10 00010 13
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCce-----eeCCCCCCcchh-hhhcccCcHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPV-----VISPDGLFPSLF-REVIRRAPHEFK 813 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPl-----LLSPd~Lf~ALr-REvi~Rkpe~FK 813 (898)
+|+.++++.++++|+++..+|+....... ..|..+ +++.-.+ .+..++.+.... .+... ...-|
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~---~~l~~~-----gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~--~~~~K 156 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIA---PVAAIL-----GIPPENIFANQILFGDSGEYAGFDENEPTS--RSGGK 156 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHH---HHHHHh-----CCChhhEEEeEEEEcCCCcEECccCCCccc--CCccH
Confidence 79999999999999999999998765443 344432 3331111 122222111110 00000 01125
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
.+.++.++..... ...++ |||+.+|+.+.+..|+.
T Consensus 157 ~~~i~~~~~~~~~--~~~i~-iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 157 AEAVQHIKKKHGY--KTMVM-IGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHHHHHHHcCC--CceEE-EeCCHHHHHhhhcCCCC
Confidence 5666666554322 23444 89999999996665664
No 24
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.73 E-value=5.7e-05 Score=73.29 Aligned_cols=120 Identities=15% Similarity=0.239 Sum_probs=69.1
Q ss_pred eEEEEecCCCccccccc-CccCCCCCCCC-CchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC
Q 002634 710 KIVISDVDGTITKSDVL-GQFMPLVGKDW-TQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG 787 (898)
Q Consensus 710 KVVISDIDGTITkSD~l-GhilP~lGKDW-th~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G 787 (898)
|+|++||||||..-.+. ...-..+++ | ..++. +.+.|+++||++..+|+++.... +..|..+ +++
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~-~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~---~~~l~~~-----gi~-- 68 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKA-FNVRDGY--GIRCALKSGIEVAIITGRKAKLV---EDRCKTL-----GIT-- 68 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEE-EechhHH--HHHHHHHCCCEEEEEECCCCHHH---HHHHHHc-----CCC--
Confidence 78999999999973211 000011222 4 22333 68999999999999999987543 4455543 221
Q ss_pred ceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCc
Q 002634 788 PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGE 863 (898)
Q Consensus 788 PlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGe 863 (898)
.+|.. ... |.+.+..+...+.-.....++ +||..+|+.+.+.+|++ +..-+.+..
T Consensus 69 -------~~~~~-----~~~-----k~~~~~~~~~~~~~~~~~~~~-vGDs~~D~~~~~~ag~~---~~v~~~~~~ 123 (154)
T TIGR01670 69 -------HLYQG-----QSN-----KLIAFSDILEKLALAPENVAY-IGDDLIDWPVMEKVGLS---VAVADAHPL 123 (154)
T ss_pred -------EEEec-----ccc-----hHHHHHHHHHHcCCCHHHEEE-ECCCHHHHHHHHHCCCe---EecCCcCHH
Confidence 11111 122 333333333322212233444 89999999999999996 444444443
No 25
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.70 E-value=0.00026 Score=70.02 Aligned_cols=131 Identities=23% Similarity=0.248 Sum_probs=75.9
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCC-CchHHHHHHHHHHHCCCeEEEEccChh------------hHHHHHHHHHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDW-TQSGVAKLFSAIKENGYQLLFLSARAI------------VQAYLTRSFLL 775 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDW-th~GVAkLy~~I~~NGYkILYLSARpi------------gqAd~TR~wL~ 775 (898)
.|++.+|.||||+..-. ++.....-.+| .-+||.++++.|+++||++..+|.-+- .....++..|.
T Consensus 1 ~~~~~~d~dg~l~~~~~-~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~ 79 (161)
T TIGR01261 1 QKILFIDRDGTLIEEPP-SDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFR 79 (161)
T ss_pred CCEEEEeCCCCccccCC-CccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH
Confidence 47999999999998311 11111122233 468999999999999999999998531 23344555555
Q ss_pred HhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 776 NLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 776 ~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
. .+++---++++|... ..+.-.+||. .+.+..+...+.-.....+. +||+.+|+.+=+++|+.+-
T Consensus 80 ~-----~gl~fd~ii~~~~~~----~~~~~~~KP~---~~~~~~~~~~~~~~~~e~l~-IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 80 S-----QGIIFDDVLICPHFP----DDNCDCRKPK---IKLLEPYLKKNLIDKARSYV-IGDRETDMQLAENLGIRGI 144 (161)
T ss_pred H-----CCCceeEEEECCCCC----CCCCCCCCCC---HHHHHHHHHHcCCCHHHeEE-EeCCHHHHHHHHHCCCeEE
Confidence 4 244311122332110 1122345663 33333333333222222444 7899999999999999864
No 26
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.67 E-value=0.00016 Score=70.95 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhccc-CcHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRR-APHEFKIACLE 818 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~R-kpe~FKie~L~ 818 (898)
+|+.++++.++++|++++.+|+.+...... +++.+.= .+.+.. .+....++.+. .+.... .-..-|...++
T Consensus 90 ~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~---~~~~lg~-~~~~~~-~l~~~~~g~~~---g~~~~~~~~g~~K~~~l~ 161 (202)
T TIGR01490 90 PEARDLIRWHKAEGHTIVLVSASLTILVKP---LARILGI-DNAIGT-RLEESEDGIYT---GNIDGNNCKGEGKVHALA 161 (202)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcHHHHHH---HHHHcCC-cceEec-ceEEcCCCEEe---CCccCCCCCChHHHHHHH
Confidence 477888888899999999999988765544 4443200 011110 01111222111 111100 01123777676
Q ss_pred HHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCce
Q 002634 819 DIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEV 864 (898)
Q Consensus 819 dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel 864 (898)
.+.....-.....++ |||..+|+.+.+.+|.+ +.|||+.++
T Consensus 162 ~~~~~~~~~~~~~~~-~gDs~~D~~~~~~a~~~----~~v~~~~~l 202 (202)
T TIGR01490 162 ELLAEEQIDLKDSYA-YGDSISDLPLLSLVGHP----YVVNPDKKL 202 (202)
T ss_pred HHHHHcCCCHHHcEe-eeCCcccHHHHHhCCCc----EEeCCCCCC
Confidence 655432222223444 99999999999999977 478887653
No 27
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.67 E-value=9.5e-05 Score=75.56 Aligned_cols=106 Identities=14% Similarity=0.146 Sum_probs=62.1
Q ss_pred hHHHHHHH-HHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCC----C-CCCcchhhhhcccCcHHHH
Q 002634 740 SGVAKLFS-AIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISP----D-GLFPSLFREVIRRAPHEFK 813 (898)
Q Consensus 740 ~GVAkLy~-~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSP----d-~Lf~ALrREvi~Rkpe~FK 813 (898)
+|+.++.+ .+++.|++++.+|+.+..........+.... .-+ ++.+. + +.+. ...-..++ |
T Consensus 97 pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~-~~~------~i~t~le~~~gg~~~----g~~c~g~~--K 163 (210)
T TIGR01545 97 PLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIH-RLN------LIASQIERGNGGWVL----PLRCLGHE--K 163 (210)
T ss_pred ccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccc-cCc------EEEEEeEEeCCceEc----CccCCChH--H
Confidence 57777775 6777899999999998877666554422110 000 11110 0 0000 00011122 4
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceee
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAI 866 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~ 866 (898)
...|+ +.+..... .+.+|||..+|..+...+|-| +.|||+..+++
T Consensus 164 v~rl~---~~~~~~~~-~~~aYsDS~~D~pmL~~a~~~----~~Vnp~~~L~~ 208 (210)
T TIGR01545 164 VAQLE---QKIGSPLK-LYSGYSDSKQDNPLLAFCEHR----WRVSKRGELQQ 208 (210)
T ss_pred HHHHH---HHhCCChh-heEEecCCcccHHHHHhCCCc----EEECcchHhcc
Confidence 44444 33322222 334599999999999999988 78999998864
No 28
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.64 E-value=0.00073 Score=66.42 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=71.0
Q ss_pred CeEEEEecCCCcccccccCccCCCC--CCCC-CchHHHHHHHHHHHCCCeEEEEccChh--------hHHHHHHHHHHHh
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLV--GKDW-TQSGVAKLFSAIKENGYQLLFLSARAI--------VQAYLTRSFLLNL 777 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~l--GKDW-th~GVAkLy~~I~~NGYkILYLSARpi--------gqAd~TR~wL~~v 777 (898)
-|++++|.||||..- + .++. -..| ..+|+.++++.|+++||++..+|..+. .+....+.|+...
T Consensus 3 ~~~~~~d~~~t~~~~---~--~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~ 77 (181)
T PRK08942 3 MKAIFLDRDGVINVD---S--DGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWS 77 (181)
T ss_pred ccEEEEECCCCcccC---C--ccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHH
Confidence 589999999999752 1 1221 1233 478999999999999999999998752 1222223444432
Q ss_pred hhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 778 KQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 778 ~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
-+ ..+++--.++.+.+.- -.++-.+||+ .|.. +++.+. -...-.+. +||+..|+.+-+++|++
T Consensus 78 l~-~~g~~f~~i~~~~~~~----~~~~~~~KP~p~~~~~-~~~~l~----~~~~~~~~-VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 78 LA-DRGGRLDGIYYCPHHP----EDGCDCRKPKPGMLLS-IAERLN----IDLAGSPM-VGDSLRDLQAAAAAGVT 142 (181)
T ss_pred HH-HcCCccceEEECCCCC----CCCCcCCCCCHHHHHH-HHHHcC----CChhhEEE-EeCCHHHHHHHHHCCCe
Confidence 11 1122211222222110 0111234443 2332 223332 11123444 89999999999999994
No 29
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.61 E-value=0.00015 Score=73.21 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCcee-----eCCCCCCcchhhhhcccCcH---
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVV-----ISPDGLFPSLFREVIRRAPH--- 810 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlL-----LSPd~Lf~ALrREvi~Rkpe--- 810 (898)
.+|+.+++..++++|+++..+|+-... .++.+|..+ ++.-.+. +..+.+. .....|.
T Consensus 76 ~pG~~e~l~~l~~~g~~~~IvS~~~~~---~i~~il~~~------~~~~~i~~n~~~~~~~~~~------~~kp~p~~~~ 140 (219)
T PRK09552 76 REGFHEFVQFVKENNIPFYVVSGGMDF---FVYPLLQGL------IPKEQIYCNGSDFSGEYIT------ITWPHPCDEH 140 (219)
T ss_pred CcCHHHHHHHHHHcCCeEEEECCCcHH---HHHHHHHHh------CCcCcEEEeEEEecCCeeE------EeccCCcccc
Confidence 469999999999999999999998643 444555532 2222222 1111110 0011111
Q ss_pred ------HHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 811 ------EFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 811 ------~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
.-|..+++++.. .. ...++ +||+.+|+.+-+++|+
T Consensus 141 ~~~~~~~~K~~~l~~~~~---~~-~~~i~-iGDs~~Di~aa~~Ag~ 181 (219)
T PRK09552 141 CQNHCGCCKPSLIRKLSD---TN-DFHIV-IGDSITDLEAAKQADK 181 (219)
T ss_pred ccccCCCchHHHHHHhcc---CC-CCEEE-EeCCHHHHHHHHHCCc
Confidence 126777777653 11 23444 8999999999999999
No 30
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.56 E-value=0.00023 Score=70.97 Aligned_cols=110 Identities=18% Similarity=0.336 Sum_probs=64.9
Q ss_pred CCeEEEEecCCCccccccc----Cc-cCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCC
Q 002634 708 NAKIVISDVDGTITKSDVL----GQ-FMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGN 782 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~l----Gh-ilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~ 782 (898)
.-|+|++|||||||..... ++ +.++.-+| ..++ +.++++|+++.++|+|+.. .++..|+.+
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d--~~~i----~~L~~~Gi~v~I~T~~~~~---~v~~~l~~l----- 85 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRD--GYGI----RCLLTSGIEVAIITGRKSK---LVEDRMTTL----- 85 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccc--hHHH----HHHHHCCCEEEEEeCCCcH---HHHHHHHHc-----
Confidence 4789999999999985311 11 11111122 1333 5556799999999999664 445566643
Q ss_pred CCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 783 ALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 783 ~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
+++ .+|. .... |.+.+..+...+.-...-.+. +||..+|+.+.+.+|++
T Consensus 86 gl~---------~~f~-----g~~~-----k~~~l~~~~~~~gl~~~ev~~-VGDs~~D~~~a~~aG~~ 134 (183)
T PRK09484 86 GIT---------HLYQ-----GQSN-----KLIAFSDLLEKLAIAPEQVAY-IGDDLIDWPVMEKVGLS 134 (183)
T ss_pred CCc---------eeec-----CCCc-----HHHHHHHHHHHhCCCHHHEEE-ECCCHHHHHHHHHCCCe
Confidence 111 1121 0111 445555554433222233444 89999999999999986
No 31
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=97.55 E-value=0.00011 Score=74.09 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHH-------
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHE------- 811 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~------- 811 (898)
.+|+.+++..++++|+++..+|+... ..+..+|..+.- ...+---++.+..+.+.. ....|..
T Consensus 72 ~pg~~e~l~~l~~~g~~~~IvS~~~~---~~i~~il~~~~~-~~~i~~n~~~~~~~~~~~------~~p~~~~~~~~~~c 141 (214)
T TIGR03333 72 REGFREFVAFINEHGIPFYVISGGMD---FFVYPLLEGIVE-KDRIYCNEADFSNEYIHI------DWPHPCDGTCQNQC 141 (214)
T ss_pred cccHHHHHHHHHHCCCeEEEECCCcH---HHHHHHHHhhCC-cccEEeceeEeeCCeeEE------eCCCCCccccccCC
Confidence 36999999999999999999999854 444445554300 001100011222111111 1112222
Q ss_pred --HHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEEC
Q 002634 812 --FKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIIN 859 (898)
Q Consensus 812 --FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiIn 859 (898)
-|..++++++.. + ...++ +||..+|+.+-+.+|+ +|.-+
T Consensus 142 g~~K~~~l~~~~~~--~--~~~i~-iGDg~~D~~~a~~Ad~----~~ar~ 182 (214)
T TIGR03333 142 GCCKPSLIRKLSEP--N--DYHIV-IGDSVTDVEAAKQSDL----CFARD 182 (214)
T ss_pred CCCHHHHHHHHhhc--C--CcEEE-EeCCHHHHHHHHhCCe----eEehH
Confidence 378888887741 2 23444 8999999999999887 56644
No 32
>PRK10976 putative hydrolase; Provisional
Probab=97.39 E-value=0.00097 Score=68.63 Aligned_cols=54 Identities=24% Similarity=0.392 Sum_probs=41.9
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
|+|++||||||..++. .+ .+...+.+++++++|++|+++|||+.... +.++..+
T Consensus 3 kli~~DlDGTLl~~~~--~i---------s~~~~~ai~~l~~~G~~~~iaTGR~~~~~---~~~~~~l 56 (266)
T PRK10976 3 QVVASDLDGTLLSPDH--TL---------SPYAKETLKLLTARGIHFVFATGRHHVDV---GQIRDNL 56 (266)
T ss_pred eEEEEeCCCCCcCCCC--cC---------CHHHHHHHHHHHHCCCEEEEEcCCChHHH---HHHHHhc
Confidence 7999999999998642 11 24467888999999999999999998743 4455543
No 33
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.33 E-value=0.00042 Score=69.07 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC--CceeeCCCCCCcchhhhhcccCcHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN--GPVVISPDGLFPSLFREVIRRAPHEFKIACL 817 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~--GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L 817 (898)
+|+.++++.++++|+++..+|+.... .++..|+.. +|.. ..++. .+. . .+ ...+|+.|+.. +
T Consensus 85 ~g~~~~l~~L~~~g~~~~i~S~~~~~---~~~~~l~~~-----gl~~~f~~i~~-~~~-~---~~--~Kp~p~~~~~~-~ 148 (214)
T PRK13288 85 ETVYETLKTLKKQGYKLGIVTTKMRD---TVEMGLKLT-----GLDEFFDVVIT-LDD-V---EH--AKPDPEPVLKA-L 148 (214)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHc-----CChhceeEEEe-cCc-C---CC--CCCCcHHHHHH-H
Confidence 58889999999999999999998743 333444432 1110 11111 111 0 00 12234444432 2
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+++. -.....+. +||+.+|+.+=+++|+++
T Consensus 149 ~~~~----~~~~~~~~-iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 149 ELLG----AKPEEALM-VGDNHHDILAGKNAGTKT 178 (214)
T ss_pred HHcC----CCHHHEEE-ECCCHHHHHHHHHCCCeE
Confidence 2221 11122444 899999999999999975
No 34
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.29 E-value=0.0013 Score=68.19 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=48.1
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP 788 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP 788 (898)
-|+|++||||||..++.. -.+-..+..++++++|++|+++|||+... ++.++..+ ++ .+|
T Consensus 2 ~kli~~DlDGTLl~~~~~-----------i~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~~~~l-----~~-~~~ 61 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHH-----------LGEKTLSTLARLRERDITLTFATGRHVLE---MQHILGAL-----SL-DAY 61 (272)
T ss_pred ccEEEEeCCCcCcCCCCc-----------CCHHHHHHHHHHHHCCCEEEEECCCCHHH---HHHHHHHc-----CC-CCc
Confidence 379999999999986421 23456788899999999999999999874 34566554 23 256
Q ss_pred eeeCCCC
Q 002634 789 VVISPDG 795 (898)
Q Consensus 789 lLLSPd~ 795 (898)
+++.-..
T Consensus 62 ~I~~NGa 68 (272)
T PRK15126 62 LITGNGT 68 (272)
T ss_pred EEecCCc
Confidence 5554433
No 35
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.28 E-value=0.00082 Score=66.14 Aligned_cols=100 Identities=19% Similarity=0.314 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC---CceeeCCCCCCcchhhhhcccCcHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN---GPVVISPDGLFPSLFREVIRRAPHEFKIA 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~---GPlLLSPd~Lf~ALrREvi~Rkpe~FKie 815 (898)
.+|+.+++..++++ |++..+|+...... +.+|..+ +++. -.+.+..+..+... . ..+|+ -|..
T Consensus 70 ~pg~~e~L~~L~~~-~~~~IvS~~~~~~~---~~~l~~~-----gl~~~f~~~~~~~~~~~i~~~--~--~~~p~-~k~~ 135 (205)
T PRK13582 70 LPGAVEFLDWLRER-FQVVILSDTFYEFA---GPLMRQL-----GWPTLFCHSLEVDEDGMITGY--D--LRQPD-GKRQ 135 (205)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeCCcHHHH---HHHHHHc-----CCchhhcceEEECCCCeEECc--c--ccccc-hHHH
Confidence 47999999999999 99999999876544 4555543 3321 11222222211101 0 11232 3667
Q ss_pred HHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCC
Q 002634 816 CLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPK 861 (898)
Q Consensus 816 ~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpk 861 (898)
+++.+... + ...++ +||+.+|+.+.+.+|+.. .++++
T Consensus 136 ~l~~~~~~-~---~~~v~-iGDs~~D~~~~~aa~~~v----~~~~~ 172 (205)
T PRK13582 136 AVKALKSL-G---YRVIA-AGDSYNDTTMLGEADAGI----LFRPP 172 (205)
T ss_pred HHHHHHHh-C---CeEEE-EeCCHHHHHHHHhCCCCE----EECCC
Confidence 77766642 1 23444 899999999999999743 25664
No 36
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.27 E-value=0.0011 Score=65.12 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCC-CCCCCceeeCCCCCCcchhhhhcccCc--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGN-ALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIA 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~-~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie 815 (898)
.+|+.++++.++++||++..+|+-+.. ..+..|..+ |- .+-++ ++.+. ++-.+|| +.|+..
T Consensus 94 ~~~~~~~L~~L~~~g~~~~i~Sn~~~~---~~~~~l~~~---gl~~~fd~-i~~s~---------~~~~~KP~~~~~~~~ 157 (198)
T TIGR01428 94 HPDVPAGLRALKERGYRLAILSNGSPA---MLKSLVKHA---GLDDPFDA-VLSAD---------AVRAYKPAPQVYQLA 157 (198)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHC---CChhhhhe-eEehh---------hcCCCCCCHHHHHHH
Confidence 468999999999999999999986643 333444432 10 01111 22211 1222344 333332
Q ss_pred HHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCc
Q 002634 816 CLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGE 863 (898)
Q Consensus 816 ~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGe 863 (898)
+ +.+. + ++ ..... +||+..|+.+-+++|+.. .-|++.|+
T Consensus 158 ~-~~~~-~-~p--~~~~~-vgD~~~Di~~A~~~G~~~---i~v~r~~~ 196 (198)
T TIGR01428 158 L-EALG-V-PP--DEVLF-VASNPWDLGGAKKFGFKT---AWVNRPGE 196 (198)
T ss_pred H-HHhC-C-Ch--hhEEE-EeCCHHHHHHHHHCCCcE---EEecCCCC
Confidence 2 2222 1 12 12333 799999999999999975 35577665
No 37
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.24 E-value=0.0011 Score=67.72 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC-ceeeCCCCCCcchhhhhcccCcHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG-PVVISPDGLFPSLFREVIRRAPHEFKIACLE 818 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G-PlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~ 818 (898)
+|+.++...|+++|+++..+|+.+.... +..|..+ ++..- .+++..+ .+..+||+. +++.
T Consensus 98 pg~~~~L~~L~~~g~~l~i~Tn~~~~~~---~~~l~~~-----~l~~~f~~i~~~~--------~~~~~KP~p---~~~~ 158 (229)
T PRK13226 98 DGVEGMLQRLECAGCVWGIVTNKPEYLA---RLILPQL-----GWEQRCAVLIGGD--------TLAERKPHP---LPLL 158 (229)
T ss_pred CCHHHHHHHHHHCCCeEEEECCCCHHHH---HHHHHHc-----CchhcccEEEecC--------cCCCCCCCH---HHHH
Confidence 5888899999999999999999876433 3344432 11110 0111111 112334432 2222
Q ss_pred HHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 819 DIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 819 dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
.+...+.-...-.+. +||+.+|+.+-+++|+.+-
T Consensus 159 ~~~~~l~~~p~~~l~-IGDs~~Di~aA~~aG~~~i 192 (229)
T PRK13226 159 VAAERIGVAPTDCVY-VGDDERDILAARAAGMPSV 192 (229)
T ss_pred HHHHHhCCChhhEEE-eCCCHHHHHHHHHCCCcEE
Confidence 222222111122444 8999999999999999753
No 38
>PRK11590 hypothetical protein; Provisional
Probab=97.24 E-value=0.00062 Score=68.83 Aligned_cols=111 Identities=8% Similarity=0.046 Sum_probs=63.0
Q ss_pred hHHHHHH-HHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHH
Q 002634 740 SGVAKLF-SAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 818 (898)
Q Consensus 740 ~GVAkLy-~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~ 818 (898)
+|+.++. +.+++.||+++.+|+.+.......-..|... .+. -++.+. +-..+..... .+.-+..+-.+
T Consensus 98 pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~--~~~-----~~i~t~--l~~~~tg~~~--g~~c~g~~K~~ 166 (211)
T PRK11590 98 PVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWL--PRV-----NLIASQ--MQRRYGGWVL--TLRCLGHEKVA 166 (211)
T ss_pred ccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcccc--ccC-----ceEEEE--EEEEEccEEC--CccCCChHHHH
Confidence 5777777 4677789999999999886655444433310 000 112111 1000111111 12223333334
Q ss_pred HHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceee
Q 002634 819 DIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAI 866 (898)
Q Consensus 819 dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~ 866 (898)
.|+..+.......| +|||..+|.-++..+|-| |.|||..++.+
T Consensus 167 ~l~~~~~~~~~~~~-aY~Ds~~D~pmL~~a~~~----~~vnp~~~l~~ 209 (211)
T PRK11590 167 QLERKIGTPLRLYS-GYSDSKQDNPLLYFCQHR----WRVTPRGELQQ 209 (211)
T ss_pred HHHHHhCCCcceEE-EecCCcccHHHHHhCCCC----EEECccHHhhc
Confidence 44444433322334 499999999999999988 78999877653
No 39
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.21 E-value=0.00077 Score=67.55 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=38.8
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQA 767 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqA 767 (898)
|+|++||||||...+.. -.+...+..++++++|++|+++|||+....
T Consensus 2 k~v~~DlDGTLl~~~~~-----------i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~ 48 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRM-----------ISERAIEAIRKAEKKGIPVSLVTGNTVPFA 48 (215)
T ss_pred cEEEEecCCCcCCCCcc-----------cCHHHHHHHHHHHHCCCEEEEEcCCcchhH
Confidence 68999999999975421 345778889999999999999999987643
No 40
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.20 E-value=0.00085 Score=67.16 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=38.8
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAY 768 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd 768 (898)
|+|++||||||..++.. -.+...+.+++++++|.+|+++|||+.....
T Consensus 4 kli~~DlDGTLl~~~~~-----------i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~ 51 (230)
T PRK01158 4 KAIAIDIDGTITDKDRR-----------LSLKAVEAIRKAEKLGIPVILATGNVLCFAR 51 (230)
T ss_pred eEEEEecCCCcCCCCCc-----------cCHHHHHHHHHHHHCCCEEEEEcCCchHHHH
Confidence 89999999999986421 1245677889999999999999999977543
No 41
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.18 E-value=0.0013 Score=67.65 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=48.4
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP 788 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP 788 (898)
-|+|++||||||..++.. -.+-..+.+++++++|++|+++|||+... ++.++..+ +...|.+|
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------i~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~~~~l---~~~~~~~~ 65 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDHT-----------ISPAVKQAIAAARAKGVNVVLTTGRPYAG---VHRYLKEL---HMEQPGDY 65 (270)
T ss_pred eEEEEEecCCcCcCCCCc-----------cCHHHHHHHHHHHHCCCEEEEecCCChHH---HHHHHHHh---CCCCCCCe
Confidence 389999999999986421 12446788899999999999999999874 45555544 22223345
Q ss_pred eeeCCCC
Q 002634 789 VVISPDG 795 (898)
Q Consensus 789 lLLSPd~ 795 (898)
+++.-..
T Consensus 66 ~I~~NGa 72 (270)
T PRK10513 66 CITNNGA 72 (270)
T ss_pred EEEcCCe
Confidence 5544333
No 42
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.17 E-value=0.00095 Score=65.38 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=39.3
Q ss_pred EEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHH
Q 002634 712 VISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRS 772 (898)
Q Consensus 712 VISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~ 772 (898)
|++||||||..++. . ..+-..+.++.++++|++|+++|||+......+..
T Consensus 1 i~~DlDGTLl~~~~----------~-i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG----------K-ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp EEEECCTTTCSTTS----------S-SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred cEEEECCceecCCC----------e-eCHHHHHHHHhhcccceEEEEEccCcccccccccc
Confidence 78999999988531 1 23678888899999999999999999876444333
No 43
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.17 E-value=0.0018 Score=66.40 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~ 816 (898)
.+|+.+++..++++||++..+|+-+... .+..|.... -..+-+. ++.+. ++-.+|| +.|...+
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~---~~~~l~~~~--l~~~fd~-iv~s~---------~~~~~KP~p~~~~~~~ 159 (224)
T PRK14988 95 REDTVPFLEALKASGKRRILLTNAHPHN---LAVKLEHTG--LDAHLDL-LLSTH---------TFGYPKEDQRLWQAVA 159 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCcCHHH---HHHHHHHCC--cHHHCCE-EEEee---------eCCCCCCCHHHHHHHH
Confidence 4699999999999999999999854322 222233210 0000011 12211 1122344 4343332
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCce
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEV 864 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel 864 (898)
+.+. + ++ ...+. +||+..|+.+=+++|+... |.+-++.+..
T Consensus 160 -~~~~-~-~p--~~~l~-igDs~~di~aA~~aG~~~~-~~v~~~~~~~ 200 (224)
T PRK14988 160 -EHTG-L-KA--ERTLF-IDDSEPILDAAAQFGIRYC-LGVTNPDSGI 200 (224)
T ss_pred -HHcC-C-Ch--HHEEE-EcCCHHHHHHHHHcCCeEE-EEEeCCCCCc
Confidence 2221 1 11 22444 8999999999999999751 2233555544
No 44
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.17 E-value=0.0011 Score=65.65 Aligned_cols=94 Identities=23% Similarity=0.318 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC-ceeeCCCCCCcchhhhhcccCcHHHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG-PVVISPDGLFPSLFREVIRRAPHEFKIACL 817 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G-PlLLSPd~Lf~ALrREvi~Rkpe~FKie~L 817 (898)
.+|+.+++..+++.|+++..+|+.... ..+.+|..+ +|..= ...+..+ .+..+||. -+.+
T Consensus 95 ~~g~~~~l~~l~~~g~~~~i~S~~~~~---~~~~~l~~~-----~l~~~f~~~~~~~--------~~~~~kp~---~~~~ 155 (226)
T PRK13222 95 YPGVKETLAALKAAGYPLAVVTNKPTP---FVAPLLEAL-----GIADYFSVVIGGD--------SLPNKKPD---PAPL 155 (226)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHc-----CCccCccEEEcCC--------CCCCCCcC---hHHH
Confidence 368889999999999999999998754 334455543 12100 0111111 11122332 1223
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+.+...+.-.....+. |||+.+|+.+-+++|++.
T Consensus 156 ~~~~~~~~~~~~~~i~-igD~~~Di~~a~~~g~~~ 189 (226)
T PRK13222 156 LLACEKLGLDPEEMLF-VGDSRNDIQAARAAGCPS 189 (226)
T ss_pred HHHHHHcCCChhheEE-ECCCHHHHHHHHHCCCcE
Confidence 3233222222233444 999999999999999975
No 45
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.16 E-value=0.0033 Score=57.86 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=63.8
Q ss_pred EEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceee
Q 002634 712 VISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVI 791 (898)
Q Consensus 712 VISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLL 791 (898)
|++|+||||...+. .-+|++++++.|+++|+++++||-.+-.-.....+-|+.+ +|| +
T Consensus 1 ~l~D~dGvl~~g~~------------~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-----Gi~-----~ 58 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE------------PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-----GIP-----V 58 (101)
T ss_dssp EEEESTTTSEETTE------------E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-----TTT------
T ss_pred CEEeCccEeEeCCC------------cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-----CcC-----C
Confidence 68999999998432 2479999999999999999999999887766666666653 343 2
Q ss_pred CCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 792 SPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 792 SPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
.++.++. +...=..+|+.. .+ ...+|+ +|. .......+..|+
T Consensus 59 ~~~~i~t----------s~~~~~~~l~~~---~~--~~~v~v-lG~-~~l~~~l~~~G~ 100 (101)
T PF13344_consen 59 DEDEIIT----------SGMAAAEYLKEH---KG--GKKVYV-LGS-DGLREELREAGF 100 (101)
T ss_dssp -GGGEEE----------HHHHHHHHHHHH---TT--SSEEEE-ES--HHHHHHHHHTTE
T ss_pred CcCEEEC----------hHHHHHHHHHhc---CC--CCEEEE-EcC-HHHHHHHHHcCC
Confidence 2333332 111122233332 22 245676 887 577777887775
No 46
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.15 E-value=0.0024 Score=66.53 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~ 816 (898)
.+|+.++++.|+++||++..+|+.+... ++..|....- ..+....++.+ +. +..+|| +.|.
T Consensus 103 ~pg~~elL~~L~~~g~~l~I~T~~~~~~---~~~~l~~~~l--~~~~~d~i~~~-~~--------~~~~KP~p~~~~--- 165 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGSTTGYTREM---MDVVVPLAAA--QGYRPDHVVTT-DD--------VPAGRPYPWMAL--- 165 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEEEcCCcHHH---HHHHHHHHhh--cCCCceEEEcC-Cc--------CCCCCCChHHHH---
Confidence 3588899999999999999999877654 3444443211 12211122222 22 122344 3332
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
..++.+=.....-.+. +||+.+|+.+=+++|+++
T Consensus 166 -~a~~~l~~~~~~e~l~-IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 166 -KNAIELGVYDVAACVK-VDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred -HHHHHcCCCCCcceEE-EcCcHHHHHHHHHCCCEE
Confidence 2222221000122344 899999999999999965
No 47
>PLN02645 phosphoglycolate phosphatase
Probab=97.11 E-value=0.0022 Score=69.00 Aligned_cols=107 Identities=22% Similarity=0.350 Sum_probs=68.9
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP 788 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP 788 (898)
-++|+|||||||-..+ + .-+|+.++++.++++|++|+++|+|+........+-|+.+ +|+
T Consensus 28 ~~~~~~D~DGtl~~~~---~---------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~l-----Gi~--- 87 (311)
T PLN02645 28 VETFIFDCDGVIWKGD---K---------LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESL-----GLN--- 87 (311)
T ss_pred CCEEEEeCcCCeEeCC---c---------cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHC-----CCC---
Confidence 4899999999999853 1 2378999999999999999999999966555544444432 232
Q ss_pred eeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 789 VVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 789 lLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+.++.++. +......+|+.+. ++.+ ..+|+ .|. ..+....+..|+.+
T Consensus 88 --~~~~~I~t----------s~~~~~~~l~~~~--~~~~-~~V~v-iG~-~~~~~~l~~~Gi~~ 134 (311)
T PLN02645 88 --VTEEEIFS----------SSFAAAAYLKSIN--FPKD-KKVYV-IGE-EGILEELELAGFQY 134 (311)
T ss_pred --CChhhEee----------hHHHHHHHHHhhc--cCCC-CEEEE-EcC-HHHHHHHHHCCCEE
Confidence 22333332 1122333444332 2222 23565 565 67888999999864
No 48
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.10 E-value=0.0012 Score=69.74 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccC--cHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRA--PHEFKIACL 817 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rk--pe~FKie~L 817 (898)
+|+.+++..|++.||++..+|+.+..... ..|..+. -..+-.. ++..+ ++..+| |+.|... +
T Consensus 112 pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~---~~l~~~g--l~~~Fd~--ii~~~--------d~~~~KP~Pe~~~~a-~ 175 (260)
T PLN03243 112 PGSREFVQALKKHEIPIAVASTRPRRYLE---RAIEAVG--MEGFFSV--VLAAE--------DVYRGKPDPEMFMYA-A 175 (260)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCcCHHHHH---HHHHHcC--CHhhCcE--EEecc--------cCCCCCCCHHHHHHH-H
Confidence 57888888999999999999998764433 3333220 0011111 12111 111233 4445433 2
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+.+. +-| .-.+. +||+.+|+.+-+++|+.+
T Consensus 176 ~~l~-~~p---~~~l~-IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 176 ERLG-FIP---ERCIV-FGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred HHhC-CCh---HHeEE-EcCCHHHHHHHHHcCCEE
Confidence 2222 111 12344 899999999999999975
No 49
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.09 E-value=0.0031 Score=64.79 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIACL 817 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~L 817 (898)
+|+.++++.++++||++..+|+.+..... ..|+.+.- ..+..-. ++..+. +..+|| +.|.. ++
T Consensus 102 pg~~e~L~~L~~~g~~l~IvT~~~~~~~~---~~l~~~gl--~~~f~d~-ii~~~~--------~~~~KP~p~~~~~-a~ 166 (253)
T TIGR01422 102 PGVIEVIAYLRARGIKIGSTTGYTREMMD---VVAPEAAL--QGYRPDY-NVTTDD--------VPAGRPAPWMALK-NA 166 (253)
T ss_pred CCHHHHHHHHHHCCCeEEEECCCcHHHHH---HHHHHHHh--cCCCCce-EEcccc--------CCCCCCCHHHHHH-HH
Confidence 58888999999999999999998765443 44443311 1111111 222222 122344 33322 22
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+.+. +-++ .-.+. +||+.+|+.+=+++|+.+
T Consensus 167 ~~l~-~~~~--~~~l~-IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 167 IELG-VYDV--AACVK-VGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred HHcC-CCCc--hheEE-ECCcHHHHHHHHHCCCeE
Confidence 2221 1101 12334 899999999999999975
No 50
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.08 E-value=0.00097 Score=63.71 Aligned_cols=99 Identities=16% Similarity=0.217 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC--C-ceeeCCCCCCcc-hhhhhcccCcHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN--G-PVVISPDGLFPS-LFREVIRRAPHEFKI 814 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~--G-PlLLSPd~Lf~A-LrREvi~Rkpe~FKi 814 (898)
.+|+.++++.++++|+++..+|+... ..++.+++.+ +++. + .+.+..++.+.. .+.. ......-|.
T Consensus 75 ~~g~~~~l~~l~~~g~~~~ivS~~~~---~~i~~~~~~~-----g~~~~~~~~~~~~~~g~~~g~~~~~--~~~~~~~K~ 144 (177)
T TIGR01488 75 RPGARELISWLKERGIDTVIVSGGFD---FFVEPVAEKL-----GIDDVFANRLEFDDNGLLTGPIEGQ--VNPEGECKG 144 (177)
T ss_pred CcCHHHHHHHHHHCCCEEEEECCCcH---HHHHHHHHHc-----CCchheeeeEEECCCCEEeCccCCc--ccCCcchHH
Confidence 36889999999999999999999765 4555566543 2221 0 111111211110 0000 011223488
Q ss_pred HHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc
Q 002634 815 ACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI 848 (898)
Q Consensus 815 e~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V 848 (898)
+.++.+...........++ |||..+|+.+.+.+
T Consensus 145 ~~l~~~~~~~~~~~~~~~~-iGDs~~D~~~~~~a 177 (177)
T TIGR01488 145 KVLKELLEESKITLKKIIA-VGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHHHHHhCCCHHHEEE-EeCCHHHHHHHhcC
Confidence 8888776543222233454 99999999997753
No 51
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.07 E-value=0.0014 Score=76.31 Aligned_cols=123 Identities=18% Similarity=0.313 Sum_probs=76.0
Q ss_pred CCCeEEEEecCCCcccccccCccCCCCCCCCC--chHHHHHHHHHHHCCCeEEEEccChhh---------HHHHHHHHHH
Q 002634 707 WNAKIVISDVDGTITKSDVLGQFMPLVGKDWT--QSGVAKLFSAIKENGYQLLFLSARAIV---------QAYLTRSFLL 775 (898)
Q Consensus 707 ~~~KVVISDIDGTITkSD~lGhilP~lGKDWt--h~GVAkLy~~I~~NGYkILYLSARpig---------qAd~TR~wL~ 775 (898)
...||+.||.||||.... -|...|.-..||. .+||.++++.|+++||+|+.+|.-+.. ....+...|.
T Consensus 166 ~~~Kia~fD~DGTLi~t~-sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~ 244 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTK-SGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVA 244 (526)
T ss_pred ccCcEEEEECCCCccccC-CCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHH
Confidence 457999999999999642 2444555566774 899999999999999999999986551 2223444454
Q ss_pred HhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCC-----CCCCcEEEEeCCchhhHHHHHhcC
Q 002634 776 NLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFP-----SDYNPFYAGFGNRDTDELSYRKIG 849 (898)
Q Consensus 776 ~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP-----~~~nPFyAgFGNR~tDV~aYR~VG 849 (898)
. .++|-- +++.++ ....|||. ..++..+...++ ....-|| +||+..|+.+-+.+|
T Consensus 245 ~-----lgipfd-viia~~--------~~~~RKP~---pGm~~~a~~~~~~~~~Id~~~S~~--VGDaagr~~~g~~ag 304 (526)
T TIGR01663 245 K-----LGVPFQ-VFIAIG--------AGFYRKPL---TGMWDHLKEEANDGTEIQEDDCFF--VGDAAGRPANGKAAG 304 (526)
T ss_pred H-----cCCceE-EEEeCC--------CCCCCCCC---HHHHHHHHHhcCcccCCCHHHeEE--eCCcccchHHHHhcC
Confidence 3 345522 222222 23456774 334444333332 1123455 589998887654444
No 52
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.07 E-value=0.002 Score=61.83 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC-------CceeeCCCCCCcchhhh--hccc-Cc
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN-------GPVVISPDGLFPSLFRE--VIRR-AP 809 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~-------GPlLLSPd~Lf~ALrRE--vi~R-kp 809 (898)
+|+.++++.++++||++.++|+....... .+|..+ +++. .+.....++++.....+ +... ..
T Consensus 75 ~g~~~ll~~l~~~g~~~~i~S~~~~~~~~---~~l~~~-----~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 146 (188)
T TIGR01489 75 PGFKEFIAFIKEHGIDFIVISDGNDFFID---PVLEGI-----GEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPC 146 (188)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCcHHHHH---HHHHHc-----CChhheeEEeccCceECCCCcEEEecCCCCccCcCCC
Confidence 47788889999999999999997654332 333321 1110 11111112211111100 0000 01
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 810 HEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 810 e~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
...|.+.++.++..+ ....++ +||+.+|+.+-+++++-
T Consensus 147 g~~K~~~~~~~~~~~---~~~~i~-iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 147 GCCKGKVIHKLSEPK---YQHIIY-IGDGVTDVCPAKLSDVV 184 (188)
T ss_pred CCCHHHHHHHHHhhc---CceEEE-ECCCcchhchHhcCCcc
Confidence 123777788776533 223444 79999999998887653
No 53
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.06 E-value=0.0051 Score=58.24 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=42.0
Q ss_pred eEEEEecCCCccccccc-CccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccC-hhhHH
Q 002634 710 KIVISDVDGTITKSDVL-GQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSAR-AIVQA 767 (898)
Q Consensus 710 KVVISDIDGTITkSD~l-GhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSAR-pigqA 767 (898)
|++++|+||||+..... -+-.+.+..+-..+|+.++++.++++|+++..+|++ +...+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~ 60 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVA 60 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHH
Confidence 68999999999975310 011122333345789999999999999999999998 55443
No 54
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.06 E-value=0.00092 Score=73.13 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC---ceeeCCCCCCcchhhhhcccCcHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG---PVVISPDGLFPSLFREVIRRAPHEFKIA 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G---PlLLSPd~Lf~ALrREvi~Rkpe~FKie 815 (898)
.+|+.++++.++++||++..+|+-.....+.. ++.+ ++..- .+.+....+...+.......+ -|.+
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l---~~~L-----gld~~~an~lei~dg~ltg~v~g~iv~~k---~K~~ 251 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYL---RDKL-----RLDAAVANELEIMDGKLTGNVLGDIVDAQ---YKAD 251 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHH---HHHc-----CCCeEEEeEEEEECCEEEeEecCccCCcc---cHHH
Confidence 46899999999999999999999876554332 2222 22110 011111111010011111122 3777
Q ss_pred HHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeeecccccchhhhHHhhh
Q 002634 816 CLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRIDVKSYTSLHTLV 882 (898)
Q Consensus 816 ~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~~~~~~~SY~~L~~~V 882 (898)
+|+.+...+.-.....++ |||..+|+.|.+.+|+.. ..|++=.++ +.+....++..|..++
T Consensus 252 ~L~~la~~lgi~~~qtIa-VGDg~NDl~m~~~AGlgi----A~nAkp~Vk-~~Ad~~i~~~~l~~~l 312 (322)
T PRK11133 252 TLTRLAQEYEIPLAQTVA-IGDGANDLPMIKAAGLGI----AYHAKPKVN-EQAQVTIRHADLMGVL 312 (322)
T ss_pred HHHHHHHHcCCChhhEEE-EECCHHHHHHHHHCCCeE----EeCCCHHHH-hhCCEEecCcCHHHHH
Confidence 888777655332233455 999999999999999854 448875553 2332223455555443
No 55
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.03 E-value=0.007 Score=67.49 Aligned_cols=135 Identities=20% Similarity=0.270 Sum_probs=75.9
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCC-CchHHHHHHHHHHHCCCeEEEEccC-hhh-------H----HHHHHHHHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDW-TQSGVAKLFSAIKENGYQLLFLSAR-AIV-------Q----AYLTRSFLL 775 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDW-th~GVAkLy~~I~~NGYkILYLSAR-pig-------q----Ad~TR~wL~ 775 (898)
.|++.+|.||||+..-. ++.....-.++ ..+||.+++..++++||++..+|.. .++ . ...+..-|.
T Consensus 2 ~k~l~lDrDgtl~~~~~-~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~ 80 (354)
T PRK05446 2 QKILFIDRDGTLIEEPP-TDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE 80 (354)
T ss_pred CcEEEEeCCCCccCCCC-ccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence 58999999999998532 12111122222 4789999999999999999999984 111 1 122333333
Q ss_pred HhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCC-CCcEEEEeCCchhhHHHHHhcCCCCCC
Q 002634 776 NLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSD-YNPFYAGFGNRDTDELSYRKIGIPKGK 854 (898)
Q Consensus 776 ~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~-~nPFyAgFGNR~tDV~aYR~VGIp~~R 854 (898)
. .+++-.-+++.++.. ..+.-.+||. .+++..+.....-+ .+.+| +||+.+|+.+=+.+|+..
T Consensus 81 ~-----~gl~fd~i~i~~~~~----sd~~~~rKP~---p~~l~~a~~~l~v~~~~svm--IGDs~sDi~aAk~aGi~~-- 144 (354)
T PRK05446 81 S-----QGIKFDEVLICPHFP----EDNCSCRKPK---TGLVEEYLAEGAIDLANSYV--IGDRETDVQLAENMGIKG-- 144 (354)
T ss_pred H-----cCCceeeEEEeCCcC----cccCCCCCCC---HHHHHHHHHHcCCCcccEEE--EcCCHHHHHHHHHCCCeE--
Confidence 2 344322233332110 0111234553 22232222222112 23444 689999999999999974
Q ss_pred EEEECCC
Q 002634 855 IFIINPK 861 (898)
Q Consensus 855 IFiInpk 861 (898)
+.||+.
T Consensus 145 -I~v~~~ 150 (354)
T PRK05446 145 -IRYARE 150 (354)
T ss_pred -EEEECC
Confidence 345664
No 56
>PRK08238 hypothetical protein; Validated
Probab=97.01 E-value=0.0014 Score=75.25 Aligned_cols=129 Identities=23% Similarity=0.258 Sum_probs=81.7
Q ss_pred CCeEEEEecCCCcccccccCc-------cCCC-----------------------CCCCC----CchHHHHHHHHHHHCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQ-------FMPL-----------------------VGKDW----TQSGVAKLFSAIKENG 753 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGh-------ilP~-----------------------lGKDW----th~GVAkLy~~I~~NG 753 (898)
.....|+|+||||+++|.+-- ..|. ++-|- -++|+.++.+.++++|
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G 88 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAG 88 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCC
Confidence 345799999999999997611 0110 11122 2579999999999999
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEE
Q 002634 754 YQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYA 833 (898)
Q Consensus 754 YkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyA 833 (898)
+++..+|+.+...++...+.| ++ .-.++.+.+ +...+++. |.+.+. +.++. +.+..
T Consensus 89 ~~v~LaTas~~~~a~~i~~~l--------Gl-Fd~Vigsd~---------~~~~kg~~-K~~~l~---~~l~~--~~~~y 144 (479)
T PRK08238 89 RKLVLATASDERLAQAVAAHL--------GL-FDGVFASDG---------TTNLKGAA-KAAALV---EAFGE--RGFDY 144 (479)
T ss_pred CEEEEEeCCCHHHHHHHHHHc--------CC-CCEEEeCCC---------ccccCCch-HHHHHH---HHhCc--cCeeE
Confidence 999999999887766554432 11 111222221 12233332 555444 33333 22333
Q ss_pred EeCCchhhHHHHHhcCCCCCCEEEECCCCcee
Q 002634 834 GFGNRDTDELSYRKIGIPKGKIFIINPKGEVA 865 (898)
Q Consensus 834 gFGNR~tDV~aYR~VGIp~~RIFiInpkGel~ 865 (898)
+||+.+|+.+|+.+| +-+.|||...+.
T Consensus 145 -vGDS~~Dlp~~~~A~----~av~Vn~~~~l~ 171 (479)
T PRK08238 145 -AGNSAADLPVWAAAR----RAIVVGASPGVA 171 (479)
T ss_pred -ecCCHHHHHHHHhCC----CeEEECCCHHHH
Confidence 599999999999999 447899986553
No 57
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.01 E-value=0.00051 Score=68.43 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhh----HHHHHHHHHHHh
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIV----QAYLTRSFLLNL 777 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpig----qAd~TR~wL~~v 777 (898)
.+|+.+++++|.+.||.++|+|+|+.. ++..|++||.++
T Consensus 75 ~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~h 117 (191)
T PF06941_consen 75 IPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERH 117 (191)
T ss_dssp -TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHH
Confidence 369999999999999999999999987 688999999986
No 58
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.00 E-value=0.0035 Score=62.59 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLED 819 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~d 819 (898)
+|+.+++..+++.||++..+|+..........+-+... .+..|+ .++.+.+ ... ...+|+.|... ++.
T Consensus 90 ~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~--~~~~f~--~i~~~~~-~~~------~KP~p~~~~~a-~~~ 157 (220)
T TIGR03351 90 PGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT--VGDDVD--AVVCPSD-VAA------GRPAPDLILRA-MEL 157 (220)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh--hhccCC--EEEcCCc-CCC------CCCCHHHHHHH-HHH
Confidence 57888899999999999999998765444433222210 001222 2333322 110 12234444432 222
Q ss_pred HHHhCCCC-CCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 820 IKKLFPSD-YNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 820 Ir~LFP~~-~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+ ... ....+. +||+.+|+.+=+++|++.
T Consensus 158 ~----~~~~~~~~~~-igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 158 T----GVQDVQSVAV-AGDTPNDLEAGINAGAGA 186 (220)
T ss_pred c----CCCChhHeEE-eCCCHHHHHHHHHCCCCe
Confidence 2 111 123444 899999999999999995
No 59
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.98 E-value=0.0014 Score=65.88 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLED 819 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~d 819 (898)
+|+.++...++++||++..+|+.... .++..|+... -..+.. .++.+ +... .-.++|+.|.. +++.
T Consensus 95 ~g~~~~l~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~--l~~~f~-~~~~~-~~~~------~~Kp~~~~~~~-~~~~ 160 (222)
T PRK10826 95 PGVREALALCKAQGLKIGLASASPLH---MLEAVLTMFD--LRDYFD-ALASA-EKLP------YSKPHPEVYLN-CAAK 160 (222)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCcHH---HHHHHHHhCc--chhccc-EEEEc-ccCC------CCCCCHHHHHH-HHHH
Confidence 47888889999999999999996543 3444444320 001111 12222 1110 01233443432 2222
Q ss_pred HHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEEC
Q 002634 820 IKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIIN 859 (898)
Q Consensus 820 Ir~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiIn 859 (898)
+ ++ ...-.+. +||+.+|+.+-+++|++. |++-+
T Consensus 161 ~-~~---~~~~~~~-igDs~~Di~aA~~aG~~~--i~v~~ 193 (222)
T PRK10826 161 L-GV---DPLTCVA-LEDSFNGMIAAKAARMRS--IVVPA 193 (222)
T ss_pred c-CC---CHHHeEE-EcCChhhHHHHHHcCCEE--EEecC
Confidence 2 11 1122444 899999999999999965 44433
No 60
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.98 E-value=0.0045 Score=58.36 Aligned_cols=88 Identities=18% Similarity=0.141 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLED 819 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~d 819 (898)
+|+.+++..|+++|+++..+|++.........+.+ +. .+.. .+..+.+ .- +||. -+.+..
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~----~~f~-~i~~~~~---------~~-~Kp~---~~~~~~ 126 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LG----DYFD-LILGSDE---------FG-AKPE---PEIFLA 126 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HH----hcCc-EEEecCC---------CC-CCcC---HHHHHH
Confidence 69999999999999999999999877766554442 21 1111 1233221 12 3443 122222
Q ss_pred HHHhCCCCCCcEEEEeCCchhhHHHHHhcC
Q 002634 820 IKKLFPSDYNPFYAGFGNRDTDELSYRKIG 849 (898)
Q Consensus 820 Ir~LFP~~~nPFyAgFGNR~tDV~aYR~VG 849 (898)
+...+.-... .+. +||+..|+.+=+++|
T Consensus 127 ~~~~~~~~~~-~l~-iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 127 ALESLGLPPE-VLH-VGDNLNDIEGARNAG 154 (154)
T ss_pred HHHHcCCCCC-EEE-EeCCHHHHHHHHHcc
Confidence 2222211122 333 799999999988876
No 61
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.94 E-value=0.0013 Score=63.29 Aligned_cols=91 Identities=18% Similarity=0.249 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccC--cHHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRA--PHEFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rk--pe~FKie~ 816 (898)
.+||.++.+.++++||++..+|+.... +..|..+ +|- -..+..+.+ .++-.+| |+.|+..+
T Consensus 89 ~pg~~~~L~~L~~~g~~~~i~s~~~~~-----~~~l~~~-----~l~-----~~f~~~~~~--~~~~~~kp~p~~~~~~~ 151 (185)
T TIGR01990 89 LPGIKNLLDDLKKNNIKIALASASKNA-----PTVLEKL-----GLI-----DYFDAIVDP--AEIKKGKPDPEIFLAAA 151 (185)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCccH-----HHHHHhc-----CcH-----hhCcEEEeh--hhcCCCCCChHHHHHHH
Confidence 368888899999999999999986421 2334432 110 001111111 1111233 44444322
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+.+. + ++ ...+. +||+.+|+.+=+++|+++
T Consensus 152 -~~~~-~-~~--~~~v~-vgD~~~di~aA~~aG~~~ 181 (185)
T TIGR01990 152 -EGLG-V-SP--SECIG-IEDAQAGIEAIKAAGMFA 181 (185)
T ss_pred -HHcC-C-CH--HHeEE-EecCHHHHHHHHHcCCEE
Confidence 2211 1 11 12344 899999999999999964
No 62
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.94 E-value=0.0015 Score=65.01 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=37.0
Q ss_pred EEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHH
Q 002634 712 VISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYL 769 (898)
Q Consensus 712 VISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~ 769 (898)
|++||||||..++.. ..+-..+..++++++|++|+++|||+......
T Consensus 1 i~~DlDGTLl~~~~~-----------i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~ 47 (225)
T TIGR01482 1 IASDIDGTLTDPNRA-----------INESALEAIRKAESVGIPVVLVTGNSVQFARA 47 (225)
T ss_pred CeEeccCccCCCCcc-----------cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH
Confidence 689999999986521 12446677899999999999999999876543
No 63
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.92 E-value=0.0024 Score=61.50 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~ 816 (898)
.+|+.++.+.++++||++..+|++ ...+..|....- ..+.+. ++.+. .+..+|| +.|.. +
T Consensus 90 ~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l--~~~f~~-v~~~~---------~~~~~kp~~~~~~~-~ 151 (185)
T TIGR02009 90 LPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGL--TDYFDA-IVDAD---------EVKEGKPHPETFLL-A 151 (185)
T ss_pred CcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcCh--HHHCCE-eeehh---------hCCCCCCChHHHHH-H
Confidence 458888889999999999999988 223445543210 011111 11111 1112334 33432 3
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
++.+. + ++. . .+. +||+..|+.+=+++|+++
T Consensus 152 ~~~~~-~-~~~-~-~v~-IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 152 AELLG-V-SPN-E-CVV-FEDALAGVQAARAAGMFA 182 (185)
T ss_pred HHHcC-C-CHH-H-eEE-EeCcHhhHHHHHHCCCeE
Confidence 33332 1 111 2 333 799999999999999963
No 64
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.92 E-value=0.0095 Score=62.90 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=42.6
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
++|+|||||||..++. .-+|+.++++.|+++|.+|+++|+|+...+.....-|..
T Consensus 3 ~~~~~D~DGtl~~~~~------------~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~ 57 (279)
T TIGR01452 3 QGFIFDCDGVLWLGER------------VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFAR 57 (279)
T ss_pred cEEEEeCCCceEcCCe------------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 6899999999987431 346789999999999999999999986544444444443
No 65
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.91 E-value=0.002 Score=66.37 Aligned_cols=55 Identities=22% Similarity=0.399 Sum_probs=43.7
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
.|+|++||||||+.++.. -++-..+..++++++|++|+++|||+... .+.++..+
T Consensus 3 ~kli~~DlDGTLl~~~~~-----------i~~~~~~al~~~~~~g~~v~iaTGR~~~~---~~~~~~~l 57 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-----------ISPETKEALARLREKGVKVVLATGRPLPD---VLSILEEL 57 (264)
T ss_pred eeEEEEcCCCCccCCCCc-----------cCHHHHHHHHHHHHCCCEEEEECCCChHH---HHHHHHHc
Confidence 589999999999997533 35678888899999999999999999844 44444443
No 66
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.87 E-value=0.0041 Score=61.29 Aligned_cols=91 Identities=25% Similarity=0.199 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCC-CCCCCceeeCCCCCCcchhhhhcccCcH--HHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGN-ALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIA 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~-~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie 815 (898)
.+|+.++++.|+++||++..+|.-+.. .+..|... |- .+. -.++.+. ++-.+||+ .|..
T Consensus 107 ~~g~~~~l~~L~~~g~~~~i~Sn~~~~----~~~~l~~~---~l~~~f-d~i~~s~---------~~~~~KP~~~~~~~- 168 (203)
T TIGR02252 107 YPDAIKLLKDLRERGLILGVISNFDSR----LRGLLEAL---GLLEYF-DFVVTSY---------EVGAEKPDPKIFQE- 168 (203)
T ss_pred CcCHHHHHHHHHHCCCEEEEEeCCchh----HHHHHHHC---CcHHhc-ceEEeec---------ccCCCCCCHHHHHH-
Confidence 468888999999999999999986542 23445432 11 111 1222222 11223443 3332
Q ss_pred HHHHHHHhCCCCCCcEEEEeCCch-hhHHHHHhcCCCC
Q 002634 816 CLEDIKKLFPSDYNPFYAGFGNRD-TDELSYRKIGIPK 852 (898)
Q Consensus 816 ~L~dIr~LFP~~~nPFyAgFGNR~-tDV~aYR~VGIp~ 852 (898)
+++.+. -...-.+. +||+. +|+.+-+++|+.+
T Consensus 169 ~~~~~~----~~~~~~~~-IgD~~~~Di~~A~~aG~~~ 201 (203)
T TIGR02252 169 ALERAG----ISPEEALH-IGDSLRNDYQGARAAGWRA 201 (203)
T ss_pred HHHHcC----CChhHEEE-ECCCchHHHHHHHHcCCee
Confidence 222222 11123444 89997 8999999999864
No 67
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.87 E-value=0.0027 Score=66.39 Aligned_cols=69 Identities=16% Similarity=0.319 Sum_probs=47.8
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG 787 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G 787 (898)
..++|++||||||..++.. ..+-..+..++++++|++|+.+|||+... .+.++..+ +++..
T Consensus 6 ~~~lI~~DlDGTLL~~~~~-----------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~---i~~~~~~l-----~~~~~ 66 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSHTY-----------DWQPAAPWLTRLREAQVPVILCSSKTAAE---MLPLQQTL-----GLQGL 66 (271)
T ss_pred CCeEEEEeCccCCcCCCCc-----------CcHHHHHHHHHHHHcCCeEEEEcCCCHHH---HHHHHHHh-----CCCCC
Confidence 5689999999999985321 12346677899999999999999999765 34555543 34334
Q ss_pred ceeeCCCC
Q 002634 788 PVVISPDG 795 (898)
Q Consensus 788 PlLLSPd~ 795 (898)
|++..-..
T Consensus 67 ~~I~~NGa 74 (271)
T PRK03669 67 PLIAENGA 74 (271)
T ss_pred cEEEeCCC
Confidence 55544433
No 68
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.86 E-value=0.0078 Score=59.49 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC
Q 002634 707 WNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN 786 (898)
Q Consensus 707 ~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~ 786 (898)
.+-++|++|+||||+..+. .-..+|+.++++.++++|+++..+|+.+. ...++.+++.+ ++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~----------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~~~~~~~-----gl~- 84 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH----------NEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAKAVEKAL-----GIP- 84 (170)
T ss_pred CCCCEEEEecCCccccCCC----------CCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHHHHHHHc-----CCE-
Confidence 5678999999999997421 12367999999999999999999999873 22344444432 111
Q ss_pred CceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCch-hhHHHHHhcCCCCCCEEEECCC
Q 002634 787 GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRD-TDELSYRKIGIPKGKIFIINPK 861 (898)
Q Consensus 787 GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~-tDV~aYR~VGIp~~RIFiInpk 861 (898)
.+ + + ....+|+.|+.. ++.+. -...-.+. +||+. +|+.+=+++|+.. ..|++.
T Consensus 85 ---~~-----~---~--~~KP~p~~~~~~-l~~~~----~~~~~~l~-IGDs~~~Di~aA~~aGi~~---i~v~~g 138 (170)
T TIGR01668 85 ---VL-----P---H--AVKPPGCAFRRA-HPEMG----LTSEQVAV-VGDRLFTDVMGGNRNGSYT---ILVEPL 138 (170)
T ss_pred ---EE-----c---C--CCCCChHHHHHH-HHHcC----CCHHHEEE-ECCcchHHHHHHHHcCCeE---EEEccC
Confidence 11 0 0 012234444432 22221 11122444 89998 8999999999964 345554
No 69
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.84 E-value=0.0021 Score=64.56 Aligned_cols=110 Identities=17% Similarity=0.309 Sum_probs=63.3
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCc----hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCC
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQ----SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNAL 784 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth----~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~L 784 (898)
-|++||||||++|+.... ..--|.-+.. .|.+ .+.|++.|+++..+|+.+... ++..|..+ ++
T Consensus 7 i~~~v~d~dGv~tdg~~~---~~~~g~~~~~~~~~D~~~--~~~L~~~Gi~laIiT~k~~~~---~~~~l~~l-----gi 73 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIV---INDEGIESRNFDIKDGMG--VIVLQLCGIDVAIITSKKSGA---VRHRAEEL-----KI 73 (169)
T ss_pred CeEEEEeCceeeECCeEE---EcCCCcEEEEEecchHHH--HHHHHHCCCEEEEEECCCcHH---HHHHHHHC-----CC
Confidence 689999999999984211 1113333322 2222 255668899999999987654 44455543 11
Q ss_pred CCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 785 PNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 785 P~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
. .+|.. ...+|+.|+. ++..+. -.....++ |||..+|+.+.+.+|+.
T Consensus 74 ~---------~~f~~-----~kpkp~~~~~-~~~~l~----~~~~ev~~-iGD~~nDi~~~~~ag~~ 120 (169)
T TIGR02726 74 K---------RFHEG-----IKKKTEPYAQ-MLEEMN----ISDAEVCY-VGDDLVDLSMMKRVGLA 120 (169)
T ss_pred c---------EEEec-----CCCCHHHHHH-HHHHcC----cCHHHEEE-ECCCHHHHHHHHHCCCe
Confidence 1 12221 2234443322 222221 11223455 99999999999999876
No 70
>PLN02940 riboflavin kinase
Probab=96.81 E-value=0.0027 Score=70.67 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIACL 817 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~L 817 (898)
+|+.++++.++++|+++..+|+.+.... +..|.++..-...| .. ++..+ ++..+||+ .|.. ++
T Consensus 96 pGv~elL~~Lk~~g~~l~IvTn~~~~~~---~~~l~~~~gl~~~F--d~-ii~~d--------~v~~~KP~p~~~~~-a~ 160 (382)
T PLN02940 96 PGANRLIKHLKSHGVPMALASNSPRANI---EAKISCHQGWKESF--SV-IVGGD--------EVEKGKPSPDIFLE-AA 160 (382)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcHHHH---HHHHHhccChHhhC--CE-EEehh--------hcCCCCCCHHHHHH-HH
Confidence 6888999999999999999999865432 23333110000011 11 22221 22234543 3322 22
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeeecccc--cchhhhHHhhhhhcCCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRID--VKSYTSLHTLVNDMFPPTS 890 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~~~~~--~~SY~~L~~~Vd~~FPp~~ 890 (898)
+.+. + ++ .-.+. +||+..|+.+-+++|+.+ |++-...+......... ..++..|. .++.+|||-.
T Consensus 161 ~~lg-v-~p--~~~l~-VGDs~~Di~aA~~aGi~~--I~v~~g~~~~~~~~~ad~~i~sl~el~-~~~~~~~~~~ 227 (382)
T PLN02940 161 KRLN-V-EP--SNCLV-IEDSLPGVMAGKAAGMEV--IAVPSIPKQTHLYSSADEVINSLLDLQ-PEKWGLPPFN 227 (382)
T ss_pred HHcC-C-Ch--hHEEE-EeCCHHHHHHHHHcCCEE--EEECCCCcchhhccCccEEeCCHhHcC-HHHcCCCCcc
Confidence 2222 1 12 22344 899999999999999974 33322111111111111 12555554 4446688765
No 71
>PRK06769 hypothetical protein; Validated
Probab=96.80 E-value=0.0068 Score=60.06 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=68.5
Q ss_pred CeEEEEecCCCcccccccCccCCCCC-CCC-CchHHHHHHHHHHHCCCeEEEEccChhhHHH--HHHHHHHHhhhCCCCC
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVG-KDW-TQSGVAKLFSAIKENGYQLLFLSARAIVQAY--LTRSFLLNLKQDGNAL 784 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lG-KDW-th~GVAkLy~~I~~NGYkILYLSARpigqAd--~TR~wL~~v~Q~G~~L 784 (898)
=|++++|.||||-. |.. +.. .++ ..+||.+++..|+++||++..+|..+..++. ..+.++..+. ..+|
T Consensus 4 ~~~~~~d~d~~~~~-----~~~-~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~--~~g~ 75 (173)
T PRK06769 4 IQAIFIDRDGTIGG-----DTT-IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELK--GFGF 75 (173)
T ss_pred CcEEEEeCCCcccC-----CCC-CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHH--hCCc
Confidence 47899999999942 322 121 123 3689999999999999999999987532110 0111222221 1222
Q ss_pred CCCceeeCCCCCCcchhhhhcccCc--HHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 785 PNGPVVISPDGLFPSLFREVIRRAP--HEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 785 P~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
. .++++.... ..++-.+|| +.|+.. ++++. ....-.+. +||+.+|+.+-+++|+..-
T Consensus 76 ~--~~~~~~~~~----~~~~~~~KP~p~~~~~~-~~~l~----~~p~~~i~-IGD~~~Di~aA~~aGi~~i 134 (173)
T PRK06769 76 D--DIYLCPHKH----GDGCECRKPSTGMLLQA-AEKHG----LDLTQCAV-IGDRWTDIVAAAKVNATTI 134 (173)
T ss_pred C--EEEECcCCC----CCCCCCCCCCHHHHHHH-HHHcC----CCHHHeEE-EcCCHHHHHHHHHCCCeEE
Confidence 2 122221100 111122344 444432 22222 11122344 7899999999999999754
No 72
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.79 E-value=0.0028 Score=64.97 Aligned_cols=69 Identities=20% Similarity=0.411 Sum_probs=48.5
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP 788 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP 788 (898)
-|+|++||||||..++. . -.+-..+..++++++|++|+.+|||+... ++.++..+ .+ .+|
T Consensus 3 ~kli~~DlDGTLl~~~~--~---------i~~~~~~ai~~~~~~G~~~~iaTGR~~~~---~~~~~~~l-----~~-~~~ 62 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--T---------ILPESLEALARAREAGYKVIIVTGRHHVA---IHPFYQAL-----AL-DTP 62 (272)
T ss_pred ccEEEEeCCCceECCCC--c---------cCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHHHHhc-----CC-CCC
Confidence 38999999999998642 1 13446788899999999999999999754 45565544 22 356
Q ss_pred eeeCCCCCC
Q 002634 789 VVISPDGLF 797 (898)
Q Consensus 789 lLLSPd~Lf 797 (898)
++..-..+.
T Consensus 63 ~I~~NGa~i 71 (272)
T PRK10530 63 AICCNGTYL 71 (272)
T ss_pred EEEcCCcEE
Confidence 655544433
No 73
>PRK10444 UMP phosphatase; Provisional
Probab=96.77 E-value=0.0024 Score=67.16 Aligned_cols=66 Identities=23% Similarity=0.369 Sum_probs=49.6
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCce
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPV 789 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPl 789 (898)
+.|+||+||||..++. ..+|+.+.++.|+++|.+|+++|+|+-.-.....+-|..+ |..++..-+
T Consensus 2 ~~v~~DlDGtL~~~~~------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~---G~~~~~~~i 66 (248)
T PRK10444 2 KNVICDIDGVLMHDNV------------AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATA---GVDVPDSVF 66 (248)
T ss_pred cEEEEeCCCceEeCCe------------eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc---CCCCCHhhE
Confidence 5799999999998642 2578999999999999999999999976655555555543 444444444
Q ss_pred e
Q 002634 790 V 790 (898)
Q Consensus 790 L 790 (898)
+
T Consensus 67 ~ 67 (248)
T PRK10444 67 Y 67 (248)
T ss_pred e
Confidence 3
No 74
>PTZ00174 phosphomannomutase; Provisional
Probab=96.76 E-value=0.0032 Score=65.29 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=38.5
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQ 766 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigq 766 (898)
-|+|++||||||..++.. + .+...+..++++++|++|+++|||+...
T Consensus 5 ~klia~DlDGTLL~~~~~--i---------s~~~~~ai~~l~~~Gi~~viaTGR~~~~ 51 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNP--I---------TQEMKDTLAKLKSKGFKIGVVGGSDYPK 51 (247)
T ss_pred CeEEEEECcCCCcCCCCC--C---------CHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence 589999999999987632 2 2346788899999999999999998763
No 75
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.72 E-value=0.0023 Score=67.10 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=43.8
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCC-CchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDW-TQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDW-th~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~ 775 (898)
|+|+|||||||..++. +.+ ..+|+.+.+++|+++|++|+++|+|+..-.......|.
T Consensus 2 k~i~~D~DGtl~~~~~---------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~ 59 (257)
T TIGR01458 2 KGVLLDISGVLYISDA---------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQ 59 (257)
T ss_pred CEEEEeCCCeEEeCCC---------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 6899999999998642 112 35789999999999999999999987665444444444
No 76
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.69 E-value=0.0032 Score=68.98 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=39.8
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTR 771 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR 771 (898)
|+|++||||||.+++. ..| +-+.+..++++++|.+|+.+|||+..-....+
T Consensus 2 KLIftDLDGTLLd~~~---------~~~--~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~ 52 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF---------NSY--GAARQALAALERRSIPLVLYSLRTRAQLEHLC 52 (302)
T ss_pred cEEEEeCCCCCcCCCC---------cCC--HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 7899999999998542 122 34778889999999999999999876543333
No 77
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.67 E-value=0.021 Score=58.72 Aligned_cols=132 Identities=25% Similarity=0.348 Sum_probs=86.7
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCC--CC-CchHHHHHHHHHHHCCCeEEEEccC--------hhhHHHHHHHHHHH
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGK--DW-TQSGVAKLFSAIKENGYQLLFLSAR--------AIVQAYLTRSFLLN 776 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGK--DW-th~GVAkLy~~I~~NGYkILYLSAR--------pigqAd~TR~wL~~ 776 (898)
..|++..|-||||-+-. +. ++.+ +| -.+|+.....++.+.||++|.+|-- +...-....+|+.+
T Consensus 4 ~~k~lflDRDGtin~d~--~~---yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~ 78 (181)
T COG0241 4 DQKALFLDRDGTINIDK--GD---YVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLK 78 (181)
T ss_pred CCcEEEEcCCCceecCC--Cc---ccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHH
Confidence 36899999999999742 11 4432 33 5789999999999999999999972 23333333334433
Q ss_pred -hhhCCCCCCCCceeeCCCCCCcchhhh--hcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 777 -LKQDGNALPNGPVVISPDGLFPSLFRE--VIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 777 -v~Q~G~~LP~GPlLLSPd~Lf~ALrRE--vi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
+.+.|..|. +-+.+ |. +++ -.-||| |..++..+..-|.-+....|. .|||.+|+.+=..+|+.+-
T Consensus 79 ~l~~~gv~id-~i~~C-ph------~p~~~c~cRKP---~~gm~~~~~~~~~iD~~~s~~-VGD~~~Dlq~a~n~gi~~~ 146 (181)
T COG0241 79 ILASQGVKID-GILYC-PH------HPEDNCDCRKP---KPGMLLSALKEYNIDLSRSYV-VGDRLTDLQAAENAGIKGV 146 (181)
T ss_pred HHHHcCCccc-eEEEC-CC------CCCCCCcccCC---ChHHHHHHHHHhCCCccceEE-ecCcHHHHHHHHHCCCCce
Confidence 345554442 22222 32 233 367788 666666555545445556676 8999999999999999954
Q ss_pred CEE
Q 002634 854 KIF 856 (898)
Q Consensus 854 RIF 856 (898)
++.
T Consensus 147 ~~~ 149 (181)
T COG0241 147 LVL 149 (181)
T ss_pred EEE
Confidence 443
No 78
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.65 E-value=0.0033 Score=65.09 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIACL 817 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~L 817 (898)
+|+.+++..|+++||++..+|+.+..... ..|..+. -..+-+ .++.+.+ +-..||+ .|.. ++
T Consensus 111 pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~---~~l~~~g--l~~~Fd-~iv~~~~---------~~~~KP~p~~~~~-a~ 174 (248)
T PLN02770 111 NGLYKLKKWIEDRGLKRAAVTNAPRENAE---LMISLLG--LSDFFQ-AVIIGSE---------CEHAKPHPDPYLK-AL 174 (248)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCCHHHHH---HHHHHcC--ChhhCc-EEEecCc---------CCCCCCChHHHHH-HH
Confidence 48889999999999999999998765443 4444320 001111 1222221 1223443 3322 22
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+.+. -.....+. +||+..|+.+=+++|+++
T Consensus 175 ~~~~----~~~~~~l~-vgDs~~Di~aA~~aGi~~ 204 (248)
T PLN02770 175 EVLK----VSKDHTFV-FEDSVSGIKAGVAAGMPV 204 (248)
T ss_pred HHhC----CChhHEEE-EcCCHHHHHHHHHCCCEE
Confidence 2222 11122444 899999999999999985
No 79
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.64 E-value=0.0065 Score=64.84 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~ 816 (898)
.+|+.+++..++++||++..+|+.+..... ..|... .+..+..+--.+.. .++..+||+ .|.. +
T Consensus 146 ~pGv~elL~~L~~~g~~l~IvTn~~~~~~~---~~l~~~--~~~~~~~~~~~v~~--------~~~~~~KP~p~~~~~-a 211 (286)
T PLN02779 146 RPGVLRLMDEALAAGIKVAVCSTSNEKAVS---KIVNTL--LGPERAQGLDVFAG--------DDVPKKKPDPDIYNL-A 211 (286)
T ss_pred hhhHHHHHHHHHHCCCeEEEEeCCCHHHHH---HHHHHh--ccccccCceEEEec--------cccCCCCCCHHHHHH-H
Confidence 358888999999999999999997554433 233321 00111111001111 112233543 3332 2
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
++.+. + .+ .-.+. +||+.+|+.+=+++|++.
T Consensus 212 ~~~~~-~-~p--~~~l~-IGDs~~Di~aA~~aG~~~ 242 (286)
T PLN02779 212 AETLG-V-DP--SRCVV-VEDSVIGLQAAKAAGMRC 242 (286)
T ss_pred HHHhC-c-Ch--HHEEE-EeCCHHhHHHHHHcCCEE
Confidence 22222 1 11 22444 899999999999999974
No 80
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.63 E-value=0.0042 Score=65.00 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=40.1
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHH
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQA 767 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqA 767 (898)
.-|+|++||||||..++. -..+++.+++++++++|++|+.+|||+....
T Consensus 3 ~~kli~~DlDGTLl~~~~-----------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~ 51 (273)
T PRK00192 3 MKLLVFTDLDGTLLDHHT-----------YSYEPAKPALKALKEKGIPVIPCTSKTAAEV 51 (273)
T ss_pred cceEEEEcCcccCcCCCC-----------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 358999999999998542 1245688899999999999999999987554
No 81
>PRK11587 putative phosphatase; Provisional
Probab=96.61 E-value=0.003 Score=63.65 Aligned_cols=91 Identities=15% Similarity=0.222 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIACL 817 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~L 817 (898)
+|+.+++..|+++||++..+|+...... +..|... +...+. .++.. ..+-.+||+ .|... +
T Consensus 86 pg~~e~L~~L~~~g~~~~ivTn~~~~~~---~~~l~~~---~l~~~~--~i~~~--------~~~~~~KP~p~~~~~~-~ 148 (218)
T PRK11587 86 PGAIALLNHLNKLGIPWAIVTSGSVPVA---SARHKAA---GLPAPE--VFVTA--------ERVKRGKPEPDAYLLG-A 148 (218)
T ss_pred cCHHHHHHHHHHcCCcEEEEcCCCchHH---HHHHHhc---CCCCcc--EEEEH--------HHhcCCCCCcHHHHHH-H
Confidence 6889999999999999999999765432 3333321 122221 12221 122233443 33222 2
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+.+. + .+. + .+. +||+..|+.+=+++|+++
T Consensus 149 ~~~g-~-~p~-~-~l~-igDs~~di~aA~~aG~~~ 178 (218)
T PRK11587 149 QLLG-L-APQ-E-CVV-VEDAPAGVLSGLAAGCHV 178 (218)
T ss_pred HHcC-C-Ccc-c-EEE-EecchhhhHHHHHCCCEE
Confidence 2222 1 121 2 333 899999999999999965
No 82
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.57 E-value=0.006 Score=64.48 Aligned_cols=94 Identities=15% Similarity=0.239 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~ 816 (898)
.+|+.++++.++++||++..+|+.+... .+..|.... -+..+. .++..+. +-.+||+ .|+..
T Consensus 103 ~~g~~e~L~~Lk~~g~~l~ivTn~~~~~---~~~~l~~~~-i~~~f~---~i~~~d~--------~~~~Kp~p~~~~~~- 166 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVEMALITNKPERF---VAPLLDQMK-IGRYFR---WIIGGDT--------LPQKKPDPAALLFV- 166 (272)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCcHHH---HHHHHHHcC-cHhhCe---EEEecCC--------CCCCCCCcHHHHHH-
Confidence 3688899999999999999999976542 223333210 001111 1222221 1123443 23322
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
++.+ ++ .....+. +||+.+|+.+-+++|+++-
T Consensus 167 ~~~~-g~---~~~~~l~-IGD~~~Di~aA~~aGi~~i 198 (272)
T PRK13223 167 MKMA-GV---PPSQSLF-VGDSRSDVLAAKAAGVQCV 198 (272)
T ss_pred HHHh-CC---ChhHEEE-ECCCHHHHHHHHHCCCeEE
Confidence 2222 11 1123444 9999999999999999853
No 83
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=96.54 E-value=0.0013 Score=63.24 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=51.4
Q ss_pred HHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCC---CCCcchhhhhcccCcHHHHHHHHHHH
Q 002634 744 KLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPD---GLFPSLFREVIRRAPHEFKIACLEDI 820 (898)
Q Consensus 744 kLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd---~Lf~ALrREvi~Rkpe~FKie~L~dI 820 (898)
++++.++++|++++.+||-+..+ ++.++.. .++|.=.++.+.- .-.. ........... =|.++++.+
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~---i~~~~~~-----~~i~~~~v~~~~~~~~~~~~-~~~~~~~~~~~-~K~~~l~~~ 165 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEI---IEPIAER-----LGIDDDNVIGNELFDNGGGI-FTGRITGSNCG-GKAEALKEL 165 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHH---HHHHHHH-----TTSSEGGEEEEEEECTTCCE-EEEEEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCcHHH---HHHHHHH-----cCCCceEEEEEeeeecccce-eeeeECCCCCC-cHHHHHHHH
Confidence 88899999999999999986654 4444443 3555433333221 0000 00000000000 388888888
Q ss_pred ---HHhCCCCCCcEEEEeCCchhhHHHHH
Q 002634 821 ---KKLFPSDYNPFYAGFGNRDTDELSYR 846 (898)
Q Consensus 821 ---r~LFP~~~nPFyAgFGNR~tDV~aYR 846 (898)
... +....++++ +||..+|+.+.|
T Consensus 166 ~~~~~~-~~~~~~~~~-iGDs~~D~~~lr 192 (192)
T PF12710_consen 166 YIRDEE-DIDPDRVIA-IGDSINDLPMLR 192 (192)
T ss_dssp HHHHHH-THTCCEEEE-EESSGGGHHHHH
T ss_pred HHHhhc-CCCCCeEEE-EECCHHHHHHhC
Confidence 211 123344554 999999998875
No 84
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.52 E-value=0.0054 Score=61.52 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=46.5
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCcee
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVV 790 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlL 790 (898)
.|++||||||+.++.. -..+ ..++.++++++|++|+++|||+.... +.+++.+ +++..|++
T Consensus 1 ~i~~DlDGTLL~~~~~----------~~~~-~~~~l~~l~~~gi~~~i~TgR~~~~~---~~~~~~l-----~~~~~~~I 61 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSY----------DWQP-AAPWLTRLQEAGIPVILCTSKTAAEV---EYLQKAL-----GLTGDPYI 61 (221)
T ss_pred CEEEeCCCCCcCCCCC----------CcHH-HHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHHc-----CCCCCcEE
Confidence 3799999999986521 1123 67888999999999999999998654 4444433 34334666
Q ss_pred eCCCCCC
Q 002634 791 ISPDGLF 797 (898)
Q Consensus 791 LSPd~Lf 797 (898)
..-..++
T Consensus 62 ~~NGa~i 68 (221)
T TIGR02463 62 AENGAAI 68 (221)
T ss_pred EeCCcEE
Confidence 5544433
No 85
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.52 E-value=0.0049 Score=63.32 Aligned_cols=53 Identities=19% Similarity=0.410 Sum_probs=40.4
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+|++||||||..++. ...+...+.+++++++|++|+.+|||+.. .++..+..+
T Consensus 1 li~~DlDGTLl~~~~-----------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~---~~~~~~~~~ 53 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-----------TISPSTKEALAKLREKGIKVVLATGRPYK---EVKNILKEL 53 (256)
T ss_pred CEEEeCCCCCCCCCC-----------ccCHHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHc
Confidence 478999999998531 12356788999999999999999999964 344555543
No 86
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.52 E-value=0.028 Score=58.02 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=65.4
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG 787 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G 787 (898)
+-++|++|+|||+.... ..-+|+.++++.|+++|+++.++|..+...... ...|..+ +|+.+
T Consensus 7 ~~~~~~~D~dG~l~~~~------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~-~~~L~~~-----gl~~~ 68 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGN------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSL-HKTLKSL-----GINAD 68 (242)
T ss_pred cCCEEEEecccccccCC------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHH-HHHHHHC-----CCCcc
Confidence 34689999999998742 135899999999999999999999976544332 2455543 34321
Q ss_pred ceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 788 PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 788 PlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
.++.++. ...+-.+.|..+..-+.......|. +|++..|+.....+|+
T Consensus 69 ----~~~~Ii~----------s~~~~~~~l~~~~~~~~~~~~~~~~-vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 69 ----LPEMIIS----------SGEIAVQMILESKKRFDIRNGIIYL-LGHLENDIINLMQCYT 116 (242)
T ss_pred ----ccceEEc----------cHHHHHHHHHhhhhhccCCCceEEE-eCCcccchhhhcCCCc
Confidence 0111111 1111123344332212111122455 8998888888877665
No 87
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.47 E-value=0.0037 Score=61.92 Aligned_cols=126 Identities=23% Similarity=0.392 Sum_probs=70.3
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCC--chHHHHHHHHHHHCCCeEEEEccCh-------hhHHHHHHHHHHHhhhC
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWT--QSGVAKLFSAIKENGYQLLFLSARA-------IVQAYLTRSFLLNLKQD 780 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWt--h~GVAkLy~~I~~NGYkILYLSARp-------igqAd~TR~wL~~v~Q~ 780 (898)
||+.+|+||||.+... |.-.+.-..||. +++|.+..++++++||+|+.+|--. .......+..+..+.+
T Consensus 1 Kia~fD~DgTLi~~~s-~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~- 78 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS-GKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILK- 78 (159)
T ss_dssp SEEEE-SCTTTEE-ST-STTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHH-
T ss_pred CEEEEeCCCCccCCCC-CCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHH-
Confidence 7899999999997543 333444467774 6789999999999999999999431 2222222233333211
Q ss_pred CCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCC-----CCCcEEEEeCCc-----------hhhHHH
Q 002634 781 GNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPS-----DYNPFYAGFGNR-----------DTDELS 844 (898)
Q Consensus 781 G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~-----~~nPFyAgFGNR-----------~tDV~a 844 (898)
..++| +.+ +.|.+. ..-||| +..++..+...++. ..+-||+ ||+ ++|..-
T Consensus 79 ~l~ip---~~~-----~~a~~~-d~~RKP---~~GM~~~~~~~~~~~~~id~~~Sf~V--GDaagr~~~~~d~s~~D~~f 144 (159)
T PF08645_consen 79 ELGIP---IQV-----YAAPHK-DPCRKP---NPGMWEFALKDYNDGVEIDLANSFYV--GDAAGRSKKKKDFSDSDRKF 144 (159)
T ss_dssp HCTS----EEE-----EECGCS-STTSTT---SSHHHHHHCCCTSTT--S-CCC-EEE--ESSCHCTB-S--S--HHHHH
T ss_pred HcCCc---eEE-----EecCCC-CCCCCC---chhHHHHHHHhccccccccccceEEE--eccCCCCCcccccChhHHHH
Confidence 12444 332 333343 267788 46677766655542 2356776 553 566665
Q ss_pred HHhcCCC
Q 002634 845 YRKIGIP 851 (898)
Q Consensus 845 YR~VGIp 851 (898)
=..+||.
T Consensus 145 A~N~gi~ 151 (159)
T PF08645_consen 145 ALNCGIK 151 (159)
T ss_dssp HHHHT--
T ss_pred HHHcCCc
Confidence 5566663
No 88
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.43 E-value=0.0051 Score=65.56 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLED 819 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~d 819 (898)
+|+.++++.|+++|+++..+|+.... .+...|+.+. -...|- .++..+ . ..++++ .+..
T Consensus 145 pg~~e~L~~L~~~gi~laIvSn~~~~---~~~~~L~~~g-l~~~F~---~vi~~~--------~-~~~k~~-----~~~~ 203 (273)
T PRK13225 145 PGVADLLAQLRSRSLCLGILSSNSRQ---NIEAFLQRQG-LRSLFS---VVQAGT--------P-ILSKRR-----ALSQ 203 (273)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcC-ChhheE---EEEecC--------C-CCCCHH-----HHHH
Confidence 68899999999999999999987643 3344444320 000010 011111 1 112333 3333
Q ss_pred HHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 820 IKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 820 Ir~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+...+.-...-.+. |||+..|+.+=+++|+..
T Consensus 204 ~l~~~~~~p~~~l~-IGDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 204 LVAREGWQPAAVMY-VGDETRDVEAARQVGLIA 235 (273)
T ss_pred HHHHhCcChhHEEE-ECCCHHHHHHHHHCCCeE
Confidence 32222111123444 899999999999999965
No 89
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.43 E-value=0.022 Score=57.82 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=69.4
Q ss_pred CeEEEEecCCCccccccc-CccCCCCCCCC--------------CchHHHHHHHHHHHCCCeEEEEccC-hhhHHHHHHH
Q 002634 709 AKIVISDVDGTITKSDVL-GQFMPLVGKDW--------------TQSGVAKLFSAIKENGYQLLFLSAR-AIVQAYLTRS 772 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~l-GhilP~lGKDW--------------th~GVAkLy~~I~~NGYkILYLSAR-pigqAd~TR~ 772 (898)
+++||||+|+|+..---- -|..|+.-+|- ..+||.++.+.|+++||++..+|+. +...+. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~---~ 78 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAY---E 78 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHH---H
Confidence 689999999999852111 12233311111 2579999999999999999999987 554333 3
Q ss_pred HHHHhh--hCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCC--CCCCcEEEEeCCchhhHHHHHhc
Q 002634 773 FLLNLK--QDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFP--SDYNPFYAGFGNRDTDELSYRKI 848 (898)
Q Consensus 773 wL~~v~--Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP--~~~nPFyAgFGNR~tDV~aYR~V 848 (898)
.|..+. ..|...|.=.. .+..+. ..+...++|. .+.++.+...++ -.....+. +||+..|+.+=++.
T Consensus 79 ~L~~~~l~~~~~~~~~~~~---Fd~iv~--~~~~~~~kp~---~~i~~~~~~~~~~gl~p~e~l~-VgDs~~di~aA~~a 149 (174)
T TIGR01685 79 ILGTFEITYAGKTVPMHSL---FDDRIE--IYKPNKAKQL---EMILQKVNKVDPSVLKPAQILF-FDDRTDNVREVWGY 149 (174)
T ss_pred HHHhCCcCCCCCcccHHHh---ceeeee--ccCCchHHHH---HHHHHHhhhcccCCCCHHHeEE-EcChhHhHHHHHHh
Confidence 333220 00110000000 011111 0111111111 123444443320 01123444 89999999999999
Q ss_pred CCCC
Q 002634 849 GIPK 852 (898)
Q Consensus 849 GIp~ 852 (898)
|+.+
T Consensus 150 Gi~~ 153 (174)
T TIGR01685 150 GVTS 153 (174)
T ss_pred CCEE
Confidence 9976
No 90
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.40 E-value=0.0066 Score=62.70 Aligned_cols=52 Identities=17% Similarity=0.480 Sum_probs=40.2
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+|++||||||..++ +.-+...+..++++++|.+|+++|||+... .+.++..+
T Consensus 1 li~~DlDGTLl~~~------------~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~---~~~~~~~l 52 (225)
T TIGR02461 1 VIFTDLDGTLLPPG------------YEPGPAREALEELKDLGFPIVFVSSKTRAE---QEYYREEL 52 (225)
T ss_pred CEEEeCCCCCcCCC------------CCchHHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHHHc
Confidence 58999999999842 123468899999999999999999998774 34455543
No 91
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=96.35 E-value=0.007 Score=63.21 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=42.1
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+.|++||||||..++. .-+|+.+++++++++|.+|++||+.+-.........|+.+
T Consensus 2 ~~~~~D~DGtl~~~~~------------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~ 57 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE------------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF 57 (249)
T ss_pred CEEEEeCCCceEcCCe------------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 6899999999998532 1346899999999999999999974444444455566543
No 92
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.29 E-value=0.012 Score=58.16 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchh-hhhcccCcHHHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLF-REVIRRAPHEFKIACL 817 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALr-REvi~Rkpe~FKie~L 817 (898)
.+|+.+++++|+++ |+++++|+.+..........|. + ...|| +.|...- .+....||+.|+.
T Consensus 76 ~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~-l---~~~f~---------~~f~~i~~~~~~~~kp~~~~~--- 138 (197)
T PHA02597 76 YDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFN-L---NALFP---------GAFSEVLMCGHDESKEKLFIK--- 138 (197)
T ss_pred CCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCC-H---HHhCC---------CcccEEEEeccCcccHHHHHH---
Confidence 35888999999886 6778888865433222221110 0 01111 1111110 0111224443333
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPKG 853 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~~ 853 (898)
+...+.+ ...+. +||+..|+.+=++. ||+.-
T Consensus 139 --a~~~~~~--~~~v~-vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 139 --AKEKYGD--RVVCF-VDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred --HHHHhCC--CcEEE-eCCCHHHHHHHHHHHcCCcEE
Confidence 2222221 22333 89999999999998 99853
No 93
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.22 E-value=0.022 Score=58.37 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC---ceeeCCCCCCcchhhhhcccCcHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG---PVVISPDGLFPSLFREVIRRAPHEFKIA 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G---PlLLSPd~Lf~ALrREvi~Rkpe~FKie 815 (898)
.+|+.++++.++++| +++.+|+-.... ++..++.+ +++.= .+.+..++.+ ....+..++. |.+
T Consensus 70 ~pga~ell~~lk~~~-~~~IVS~~~~~~---~~~il~~l-----gi~~~~an~l~~~~~g~~---tG~~~~~~~~--K~~ 135 (203)
T TIGR02137 70 LEGAVEFVDWLRERF-QVVILSDTFYEF---SQPLMRQL-----GFPTLLCHKLEIDDSDRV---VGYQLRQKDP--KRQ 135 (203)
T ss_pred CccHHHHHHHHHhCC-eEEEEeCChHHH---HHHHHHHc-----CCchhhceeeEEecCCee---ECeeecCcch--HHH
Confidence 579999999999875 999999976654 44445543 22210 0111110111 1111223343 888
Q ss_pred HHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeeecccc---cchhhhHHhhhh
Q 002634 816 CLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRID---VKSYTSLHTLVN 883 (898)
Q Consensus 816 ~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~~~~~---~~SY~~L~~~Vd 883 (898)
.++.++.+ + ...++ +||..+|+.+.+.+|++. .+++|-.++ +.+.. ..+|..|-+..+
T Consensus 136 ~l~~l~~~---~-~~~v~-vGDs~nDl~ml~~Ag~~i----a~~ak~~~~-~~~~~~~~~~~~~~~~~~~~ 196 (203)
T TIGR02137 136 SVIAFKSL---Y-YRVIA-AGDSYNDTTMLSEAHAGI----LFHAPENVI-REFPQFPAVHTYEDLKREFL 196 (203)
T ss_pred HHHHHHhh---C-CCEEE-EeCCHHHHHHHHhCCCCE----EecCCHHHH-HhCCCCCcccCHHHHHHHHH
Confidence 88877653 1 24555 999999999999999984 456654443 23332 236666665544
No 94
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.21 E-value=0.0087 Score=61.88 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=39.8
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+|++||||||..++. +. .+...+..++++++|++|+++|||+... ...+++.+
T Consensus 1 li~~DlDGTll~~~~---------~~--~~~~~~~i~~l~~~g~~~~~~TgR~~~~---~~~~~~~~ 53 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG---------YD--WGPAKEVLERLQELGIPVIPCTSKTAAE---VEYLRKEL 53 (256)
T ss_pred CEEEcCCCCCcCCCC---------cC--chHHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHc
Confidence 478999999998642 01 1246788899999999999999999875 34455543
No 95
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.12 E-value=0.013 Score=66.11 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIACL 817 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~L 817 (898)
+|+.++++.|+++||++-.+|+++... ++..|+.+. -..+-+ .++...+ +...|| +.|.. ++
T Consensus 219 pGa~ElL~~Lk~~GiklaIaSn~~~~~---~~~~L~~lg--L~~yFd-~Iv~sdd---------v~~~KP~Peifl~-A~ 282 (381)
T PLN02575 219 TGSQEFVNVLMNYKIPMALVSTRPRKT---LENAIGSIG--IRGFFS-VIVAAED---------VYRGKPDPEMFIY-AA 282 (381)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCHHH---HHHHHHHcC--CHHHce-EEEecCc---------CCCCCCCHHHHHH-HH
Confidence 488899999999999999999987543 344444320 000111 1122111 112244 33432 22
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
+.+. + .+ .-.+. |||+..|+.+=+++|+.+-
T Consensus 283 ~~lg-l-~P--eecl~-IGDS~~DIeAAk~AGm~~I 313 (381)
T PLN02575 283 QLLN-F-IP--ERCIV-FGNSNQTVEAAHDARMKCV 313 (381)
T ss_pred HHcC-C-Cc--ccEEE-EcCCHHHHHHHHHcCCEEE
Confidence 2222 1 12 22344 9999999999999999643
No 96
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.09 E-value=0.013 Score=57.96 Aligned_cols=48 Identities=15% Similarity=0.395 Sum_probs=38.3
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHH
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAY 768 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd 768 (898)
+|++||||||+.++. + -..+.+.+..++++++|.+|+++|||+.....
T Consensus 1 li~~D~DgTL~~~~~--~--------~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~ 48 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA--H--------ELSPETIEALERLREAGVKVVLVTGRSLAEIK 48 (204)
T ss_pred CEEEeCcCCCcCCCC--C--------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHH
Confidence 478999999998531 1 12467889999999999999999999986544
No 97
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.09 E-value=0.023 Score=64.20 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLED 819 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~d 819 (898)
+|+.++++.|+++||++..+|+..........+.+... ..|. .++ ..+.. . -.+||+.|...+ +.
T Consensus 333 pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~----~~f~--~i~-~~d~v-~------~~~kP~~~~~al-~~ 397 (459)
T PRK06698 333 PNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD----QWVT--ETF-SIEQI-N------SLNKSDLVKSIL-NK 397 (459)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH----hhcc--eeE-ecCCC-C------CCCCcHHHHHHH-Hh
Confidence 68889999999999999999997765544443322110 0111 122 22110 0 125676554332 22
Q ss_pred HHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 820 IKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 820 Ir~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+ .+ ...++ +||+.+|+.+=+++|+.+
T Consensus 398 l----~~--~~~v~-VGDs~~Di~aAk~AG~~~ 423 (459)
T PRK06698 398 Y----DI--KEAAV-VGDRLSDINAAKDNGLIA 423 (459)
T ss_pred c----Cc--ceEEE-EeCCHHHHHHHHHCCCeE
Confidence 2 23 23444 899999999999999964
No 98
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.07 E-value=0.0075 Score=58.23 Aligned_cols=124 Identities=14% Similarity=0.022 Sum_probs=71.5
Q ss_pred CeEEEEecCCCcccccc---cCccCCCCCCC------------CCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHH
Q 002634 709 AKIVISDVDGTITKSDV---LGQFMPLVGKD------------WTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSF 773 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~---lGhilP~lGKD------------Wth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~w 773 (898)
.+.+|.|+||||-.+-. .+-..+-..-+ ...+|+.+++..++ ++|++..+|+.+...+...-+.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHH
Confidence 46899999999998632 11111100000 23689999999998 6799999999887766544322
Q ss_pred HHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 774 LLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 774 L~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
|. + ... + .+.++. +.++...||+ +++.++.+ .....-.+. |||+..|+.+-++.||++.
T Consensus 81 l~--------~-~~~-~--f~~i~~--~~d~~~~KP~-----~~k~l~~l-~~~p~~~i~-i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 81 LD--------P-KKY-F--GYRRLF--RDECVFVKGK-----YVKDLSLL-GRDLSNVII-IDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred hC--------c-CCC-E--eeeEEE--CccccccCCe-----EeecHHHc-CCChhcEEE-EECCHHHhhcCccCEEEec
Confidence 21 0 000 0 011111 2233444665 33333332 111223344 8999999999988888765
Q ss_pred C
Q 002634 854 K 854 (898)
Q Consensus 854 R 854 (898)
.
T Consensus 140 ~ 140 (148)
T smart00577 140 P 140 (148)
T ss_pred C
Confidence 3
No 99
>PLN02887 hydrolase family protein
Probab=96.04 E-value=0.011 Score=69.77 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=48.9
Q ss_pred EEEEeecCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 700 AHLYLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 700 a~IYLW~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+.+-.+++.-|+|++||||||..++.. -.+...+..++++++|++|+.+|||+.... +.++..+
T Consensus 299 ~~~~~~~~~iKLIa~DLDGTLLn~d~~-----------Is~~t~eAI~kl~ekGi~~vIATGR~~~~i---~~~l~~L 362 (580)
T PLN02887 299 GSLRFYKPKFSYIFCDMDGTLLNSKSQ-----------ISETNAKALKEALSRGVKVVIATGKARPAV---IDILKMV 362 (580)
T ss_pred cchhhhccCccEEEEeCCCCCCCCCCc-----------cCHHHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHHh
Confidence 455566777899999999999986521 234567889999999999999999998754 3444443
No 100
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.00 E-value=0.031 Score=57.09 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchh--hhhcccCcHHHHHH-
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLF--REVIRRAPHEFKIA- 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALr--REvi~Rkpe~FKie- 815 (898)
-+||.++...|+..||++..+|+++..-...+-+.+- - ..+|.... ...-.+||+--.+.
T Consensus 91 ~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~g------l-----------~~~F~~i~g~~~~~~~KP~P~~l~~ 153 (220)
T COG0546 91 FPGVKELLAALKSAGYKLGIVTNKPERELDILLKALG------L-----------ADYFDVIVGGDDVPPPKPDPEPLLL 153 (220)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhC------C-----------ccccceEEcCCCCCCCCcCHHHHHH
Confidence 4688999999999999999999998876655544322 1 11221111 22345566643333
Q ss_pred HHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 816 CLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 816 ~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+++.+..- | ...++ .||+..|+.+=+++|+++
T Consensus 154 ~~~~~~~~-~--~~~l~--VGDs~~Di~aA~~Ag~~~ 185 (220)
T COG0546 154 LLEKLGLD-P--EEALM--VGDSLNDILAAKAAGVPA 185 (220)
T ss_pred HHHHhCCC-h--hheEE--ECCCHHHHHHHHHcCCCE
Confidence 33333221 1 02244 699999999999999763
No 101
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.82 E-value=0.11 Score=56.34 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCeEEEEecCCCcccccccCccCCC-CCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPL-VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN 786 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~-lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~ 786 (898)
..|+||+|+|+||.... +|--.+. +.-.-.++|+.++...+++.|+++-.+|.-+.. .+...|..+ |.
T Consensus 2 ~~k~~v~DlDnTlw~gv-~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~---~a~~~l~~~-------~~ 70 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGV-LGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDED---DAKKVFERR-------KD 70 (320)
T ss_pred CeEEEEEcCCCCCCCCE-EccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHH---HHHHHHHhC-------cc
Confidence 46999999999999632 2211111 111123789999999999999999999998764 445555543 10
Q ss_pred CceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcC
Q 002634 787 GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIG 849 (898)
Q Consensus 787 GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VG 849 (898)
. +++. ..|..+ .+..+| |-+.+..|...+.-+..-++. +||++.|+.+-++.+
T Consensus 71 ~-~~~~--~~f~~~---~~~~~p---k~~~i~~~~~~l~i~~~~~vf-idD~~~d~~~~~~~l 123 (320)
T TIGR01686 71 F-ILQA--EDFDAR---SINWGP---KSESLRKIAKKLNLGTDSFLF-IDDNPAERANVKITL 123 (320)
T ss_pred c-cCcH--HHeeEE---EEecCc---hHHHHHHHHHHhCCCcCcEEE-ECCCHHHHHHHHHHC
Confidence 0 1111 112211 122344 444444443333223345555 899999999998854
No 102
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=95.54 E-value=0.033 Score=59.04 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=39.9
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHH-CCCeEEEEccChhhHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKE-NGYQLLFLSARAIVQA 767 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~-NGYkILYLSARpigqA 767 (898)
..+|++|+||||+..- +.-......+...+.+++|++ +|.+|+++|||+....
T Consensus 14 ~~li~~D~DGTLl~~~------~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~ 67 (266)
T PRK10187 14 NYAWFFDLDGTLAEIK------PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVEL 67 (266)
T ss_pred CEEEEEecCCCCCCCC------CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHH
Confidence 4789999999999731 111112335788888999987 7999999999998754
No 103
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.27 E-value=0.05 Score=56.11 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEeCCc-hhhHHHHHhcCCCCCCEEEECCCC
Q 002634 831 FYAGFGNR-DTDELSYRKIGIPKGKIFIINPKG 862 (898)
Q Consensus 831 FyAgFGNR-~tDV~aYR~VGIp~~RIFiInpkG 862 (898)
.+. +||+ ..|+.+=+++|+.. |+ |+..+
T Consensus 183 ~~~-VGD~~~~Di~~A~~aG~~~--i~-v~~~~ 211 (238)
T PRK10748 183 ILH-VGDDLTTDVAGAIRCGMQA--CW-INPEN 211 (238)
T ss_pred EEE-EcCCcHHHHHHHHHCCCeE--EE-EcCCC
Confidence 444 7999 59999999999976 44 45543
No 104
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=95.26 E-value=0.05 Score=58.75 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=57.0
Q ss_pred CCeEEEEecCCCccccccc-C----ccCCCCCCCCC----------chHHHHHHHHHHHCCCeEEEEccChhhH-HHHHH
Q 002634 708 NAKIVISDVDGTITKSDVL-G----QFMPLVGKDWT----------QSGVAKLFSAIKENGYQLLFLSARAIVQ-AYLTR 771 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~l-G----hilP~lGKDWt----------h~GVAkLy~~I~~NGYkILYLSARpigq-Ad~TR 771 (898)
..++||.|||-||.+.-+- | +=-+|-.++|+ -+|+.++.+...+||-+|+|+|-|.... .+.|.
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~ 157 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI 157 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence 4569999999999964322 2 23356788997 3699999999999999999999999877 88999
Q ss_pred HHHHHh
Q 002634 772 SFLLNL 777 (898)
Q Consensus 772 ~wL~~v 777 (898)
+=|.+.
T Consensus 158 ~nLk~~ 163 (274)
T COG2503 158 ENLKSE 163 (274)
T ss_pred HHHHHc
Confidence 888863
No 105
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=95.24 E-value=0.031 Score=57.79 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=38.1
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAY 768 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd 768 (898)
.+|++|+||||..++. +..-..+...+++++++++|-+|+++|||+.....
T Consensus 2 ~li~tDlDGTLl~~~~--------~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~ 52 (249)
T TIGR01485 2 LLLVSDLDNTLVDHTD--------GDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYK 52 (249)
T ss_pred eEEEEcCCCcCcCCCC--------CChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHH
Confidence 4789999999997420 11112366778888889999999999999976544
No 106
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.21 E-value=0.037 Score=66.52 Aligned_cols=51 Identities=27% Similarity=0.370 Sum_probs=39.7
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLT 770 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~T 770 (898)
.|+|++||||||+.++.. . .+-..+.+++++++|++|+.+|||+.......
T Consensus 416 ~KLIfsDLDGTLLd~d~~---------i--~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l 466 (694)
T PRK14502 416 KKIVYTDLDGTLLNPLTY---------S--YSTALDALRLLKDKELPLVFCSAKTMGEQDLY 466 (694)
T ss_pred eeEEEEECcCCCcCCCCc---------c--CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHH
Confidence 589999999999986531 1 12356788999999999999999998754433
No 107
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=95.14 E-value=0.1 Score=56.68 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=48.2
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
-+++++|+||||-+. ...-+|+++..+.|+++|-+++|||-.+..-+.....-|..
T Consensus 8 y~~~l~DlDGvl~~G------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 8 YDGFLFDLDGVLYRG------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred cCEEEEcCcCceEeC------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 367999999999985 34568999999999999999999999999888877766665
No 108
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=95.12 E-value=0.039 Score=53.57 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.8
Q ss_pred eCCchhhHHHHHhcCCCC
Q 002634 835 FGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 835 FGNR~tDV~aYR~VGIp~ 852 (898)
+||+..|+.+=+++|+++
T Consensus 165 igDs~~di~aA~~aG~~~ 182 (188)
T PRK10725 165 FEDADFGIQAARAAGMDA 182 (188)
T ss_pred EeccHhhHHHHHHCCCEE
Confidence 799999999999999863
No 109
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.09 E-value=0.085 Score=54.73 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhccc-CcHHHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRR-APHEFKIACL 817 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~R-kpe~FKie~L 817 (898)
.+|+.+|.+.+++.|++++.+||-+........+-|.-..- -+-.+...++. |...+..+ -...-|...|
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~------~an~l~~~dG~---ltG~v~g~~~~~~~K~~~l 149 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYV------VANELEIDDGK---LTGRVVGPICDGEGKAKAL 149 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchh------eeeEEEEeCCE---EeceeeeeecCcchHHHHH
Confidence 46888999999999999999999999877777766653211 11112222221 11111111 1112388888
Q ss_pred HHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceee
Q 002634 818 EDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAI 866 (898)
Q Consensus 818 ~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~ 866 (898)
+++.+.+.....--|| |||..+|.-|.+.+|.+ +.+||++++..
T Consensus 150 ~~~~~~~g~~~~~~~a-~gDs~nDlpml~~ag~~----ia~n~~~~l~~ 193 (212)
T COG0560 150 RELAAELGIPLEETVA-YGDSANDLPMLEAAGLP----IAVNPKPKLRA 193 (212)
T ss_pred HHHHHHcCCCHHHeEE-EcCchhhHHHHHhCCCC----eEeCcCHHHHH
Confidence 8887755433223455 99999999999999998 58999998754
No 110
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.076 Score=54.84 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=50.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHH-HhCCCCCCcE
Q 002634 753 GYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIK-KLFPSDYNPF 831 (898)
Q Consensus 753 GYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr-~LFP~~~nPF 831 (898)
-.+++|.|||.--....|..||..- ++ +++.|+- .. ..+ |++|.+... ++ |
T Consensus 87 ~~~L~~itar~~dl~~iT~~~l~~q-----~i-------h~~~l~i------~g-~h~--KV~~vrth~idl-------f 138 (194)
T COG5663 87 EHRLIYITARKADLTRITYAWLFIQ-----NI-------HYDHLEI------VG-LHH--KVEAVRTHNIDL-------F 138 (194)
T ss_pred hceeeeeehhhHHHHHHHHHHHHHh-----cc-------chhhhhh------hc-ccc--cchhhHhhccCc-------c
Confidence 4899999999999999999999963 33 3444332 12 122 777777443 32 2
Q ss_pred EEEeCCchhhHHHHHhcCCCCCCEEEECC-CCce
Q 002634 832 YAGFGNRDTDELSYRKIGIPKGKIFIINP-KGEV 864 (898)
Q Consensus 832 yAgFGNR~tDV~aYR~VGIp~~RIFiInp-kGel 864 (898)
++ ++-++-+.+-+.+|+|.- .||. .|++
T Consensus 139 ~e--d~~~na~~iAk~~~~~vi---lins~ynRk 167 (194)
T COG5663 139 FE--DSHDNAGQIAKNAGIPVI---LINSPYNRK 167 (194)
T ss_pred cc--ccCchHHHHHHhcCCcEE---EecCccccc
Confidence 22 345566677777898764 4454 4544
No 111
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.62 E-value=0.058 Score=67.65 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCC---CCceeeCCCCCCcchhhhhcccCcHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALP---NGPVVISPDGLFPSLFREVIRRAPHEFKIA 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP---~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie 815 (898)
.+|+.++++.|+++||++..+|+......+. .|+.. +|+ .-.++...+. . ....+|+.|. .
T Consensus 163 ~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~---~L~~~-----gl~~~~Fd~iv~~~~~-----~--~~KP~Pe~~~-~ 226 (1057)
T PLN02919 163 FPGALELITQCKNKGLKVAVASSADRIKVDA---NLAAA-----GLPLSMFDAIVSADAF-----E--NLKPAPDIFL-A 226 (1057)
T ss_pred CccHHHHHHHHHhCCCeEEEEeCCcHHHHHH---HHHHc-----CCChhHCCEEEECccc-----c--cCCCCHHHHH-H
Confidence 3578888889999999999999976655443 34432 221 0112222111 0 0123456564 3
Q ss_pred HHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 816 CLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 816 ~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
+++++. +-|. -.+. +||+..|+.+=+++|+.
T Consensus 227 a~~~lg-v~p~---e~v~-IgDs~~Di~AA~~aGm~ 257 (1057)
T PLN02919 227 AAKILG-VPTS---ECVV-IEDALAGVQAARAAGMR 257 (1057)
T ss_pred HHHHcC-cCcc---cEEE-EcCCHHHHHHHHHcCCE
Confidence 444443 1122 2334 89999999999999985
No 112
>PLN02423 phosphomannomutase
Probab=94.41 E-value=0.093 Score=55.01 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=33.6
Q ss_pred CeE-EEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChh
Q 002634 709 AKI-VISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAI 764 (898)
Q Consensus 709 ~KV-VISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpi 764 (898)
.++ +.+||||||..++.. -.+...+++++++++ ++|+.+|||+.
T Consensus 6 ~~~i~~~D~DGTLl~~~~~-----------i~~~~~~ai~~l~~~-i~fviaTGR~~ 50 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRKE-----------ATPEMLEFMKELRKV-VTVGVVGGSDL 50 (245)
T ss_pred cceEEEEeccCCCcCCCCc-----------CCHHHHHHHHHHHhC-CEEEEECCcCH
Confidence 454 459999999987521 125568889999977 99999999943
No 113
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.34 E-value=0.06 Score=55.52 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLED 819 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~d 819 (898)
+||.++.+.|+.+|.++.-.|+.+-.. ++..|..+ .-++.=+.++. ..++...||+ .--+|..
T Consensus 89 pGv~~~l~~L~~~~i~~avaS~s~~~~---~~~~L~~~----gl~~~f~~~v~--------~~dv~~~KP~--Pd~yL~A 151 (221)
T COG0637 89 PGVVELLEQLKARGIPLAVASSSPRRA---AERVLARL----GLLDYFDVIVT--------ADDVARGKPA--PDIYLLA 151 (221)
T ss_pred ccHHHHHHHHHhcCCcEEEecCChHHH---HHHHHHHc----cChhhcchhcc--------HHHHhcCCCC--CHHHHHH
Confidence 699999999999998888888876332 23333322 00110011111 2334444555 4445665
Q ss_pred HHHh-CCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 820 IKKL-FPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 820 Ir~L-FP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
.+.| +.+. - ..+|.|.++-+.+-+++|+.+
T Consensus 152 a~~Lgv~P~--~-CvviEDs~~Gi~Aa~aAGm~v 182 (221)
T COG0637 152 AERLGVDPE--E-CVVVEDSPAGIQAAKAAGMRV 182 (221)
T ss_pred HHHcCCChH--H-eEEEecchhHHHHHHHCCCEE
Confidence 5554 3332 2 345999999999999999865
No 114
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=94.16 E-value=0.12 Score=57.11 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=73.7
Q ss_pred EEeecCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCC
Q 002634 702 LYLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDG 781 (898)
Q Consensus 702 IYLW~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G 781 (898)
-++|.. .++|+||+||||....... .-..+|+.++...++++|+++..+|+++-..+. ..|..
T Consensus 120 ~~~~~~-~kvIvFDLDgTLi~~~~~v--------~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~---~~L~~----- 182 (301)
T TIGR01684 120 SKVFEP-PHVVVFDLDSTLITDEEPV--------RIRDPRIYDSLTELKKRGCILVLWSYGDRDHVV---ESMRK----- 182 (301)
T ss_pred cccccc-ceEEEEecCCCCcCCCCcc--------ccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHHH-----
Confidence 356654 5799999999999853210 122589999999999999999999987655443 45554
Q ss_pred CCCCC-CceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeC------CchhhHHHHHh-cCCCCC
Q 002634 782 NALPN-GPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFG------NRDTDELSYRK-IGIPKG 853 (898)
Q Consensus 782 ~~LP~-GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFG------NR~tDV~aYR~-VGIp~~ 853 (898)
.+|.. -.++++.+.... .+|. +...-+.-...|- ..|||.-.. -.+++|.-|.+ .||...
T Consensus 183 lGLd~YFdvIIs~Gdv~~--------~kp~--~e~~d~~~~~~~~--~~~f~~d~~~~~~lPKSprvvl~yL~~~gvn~~ 250 (301)
T TIGR01684 183 VKLDRYFDIIISGGHKAE--------EYST--MSTEDRQYRYVFT--KTPFYLNTTDGKRLPKSPRVVLWYLYDLGVNYF 250 (301)
T ss_pred cCCCcccCEEEECCcccc--------CCCC--ccccccccceEEe--cCCeEEeCCCCCcCCCCCeehHHHHHHcCCcee
Confidence 34442 123443333211 1111 1111111222332 257877442 23566666655 688877
Q ss_pred CEEE
Q 002634 854 KIFI 857 (898)
Q Consensus 854 RIFi 857 (898)
+-+|
T Consensus 251 Ktit 254 (301)
T TIGR01684 251 KSIT 254 (301)
T ss_pred eeEE
Confidence 6655
No 115
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=93.92 E-value=0.098 Score=54.28 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=38.9
Q ss_pred EEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 712 VISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 712 VISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
||||+||||.+++. .-+|+.+.++.++.+|++++++|..+-.-.....++|..
T Consensus 1 ~lfD~DGvL~~~~~------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLGHK------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcCCc------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999998532 245889999999999999999994443333444445544
No 116
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=93.85 E-value=0.12 Score=56.29 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=39.6
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHC----CCeEEEEccChhhHHHHHHHHH
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKEN----GYQLLFLSARAIVQAYLTRSFL 774 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~N----GYkILYLSARpigqAd~TR~wL 774 (898)
+||||+||||.++.. ..+|+.+.++.|..+ |+++++||...-.-.....++|
T Consensus 2 ~~ifD~DGvL~~g~~------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l 57 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK------------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEI 57 (321)
T ss_pred EEEEeCcCceECCcc------------ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHH
Confidence 689999999998632 278999999999998 9999999976543333333444
No 117
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=93.71 E-value=0.56 Score=50.20 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=56.5
Q ss_pred CCeEEEEecCCCccccc-ccCc----------cCCC----------CCCCC------------CchHHHHHHHHHHHCCC
Q 002634 708 NAKIVISDVDGTITKSD-VLGQ----------FMPL----------VGKDW------------TQSGVAKLFSAIKENGY 754 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD-~lGh----------ilP~----------lGKDW------------th~GVAkLy~~I~~NGY 754 (898)
.+-.||+|||-||..+. .+|+ +.+. +..+| .++.+.++++.|++.|.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 56789999999999765 3332 1010 11122 14678899999999999
Q ss_pred eEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC
Q 002634 755 QLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG 787 (898)
Q Consensus 755 kILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G 787 (898)
+++-||+|+..++..|-..|+++ |-.|-.-
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~---gi~fs~~ 128 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSL---GIDFSSS 128 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHC---CCCcccc
Confidence 99999999999999999999975 4444443
No 118
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=93.65 E-value=0.25 Score=48.38 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=16.1
Q ss_pred eCCchhhHHHHHhcCCCC
Q 002634 835 FGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 835 FGNR~tDV~aYR~VGIp~ 852 (898)
+||+..|+.+=+++|+..
T Consensus 164 vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 164 FDDSARNIAAAKALGMKT 181 (184)
T ss_pred EeCCHHHHHHHHHcCCEE
Confidence 799999999999999864
No 119
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=93.63 E-value=0.25 Score=48.93 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~ 816 (898)
.+|+.++++.++++||++..+|+.... .++.+|+.+.= ..+.. .+..+. ++..+|| +.|..
T Consensus 87 ~~g~~~~L~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l--~~~f~-~~~~~~---------~~~~~Kp~p~~~~~-- 149 (213)
T TIGR01449 87 FPGVEATLGALRAKGLRLGLVTNKPTP---LARPLLELLGL--AKYFS-VLIGGD---------SLAQRKPHPDPLLL-- 149 (213)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCc--HhhCc-EEEecC---------CCCCCCCChHHHHH--
Confidence 468999999999999999999997553 35556665310 01111 122111 1122344 43332
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
+...+.-...-.+. +||+.+|+.+-+++|+++-
T Consensus 150 ---~~~~~~~~~~~~~~-igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 150 ---AAERLGVAPQQMVY-VGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred ---HHHHcCCChhHeEE-eCCCHHHHHHHHHCCCeEE
Confidence 22222111122444 9999999999999999764
No 120
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=93.59 E-value=0.21 Score=46.32 Aligned_cols=93 Identities=20% Similarity=0.341 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~ 816 (898)
.+|+.++++.++++||++..+|..+. ...+.-|..+.- ..+++ .++. ..+.-.+||+ .|+. +
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~---~~~~~~l~~~~~--~~~f~--------~i~~--~~~~~~~Kp~~~~~~~-~ 142 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSR---ERIERVLERLGL--DDYFD--------EIIS--SDDVGSRKPDPDAYRR-A 142 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEH---HHHHHHHHHTTH--GGGCS--------EEEE--GGGSSSSTTSHHHHHH-H
T ss_pred hhhhhhhhhhcccccceeEEeecCCc---cccccccccccc--ccccc--------cccc--cchhhhhhhHHHHHHH-H
Confidence 46899999999999999999999974 444444554310 12232 2221 1122223553 2222 2
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
++.+ ++ ++ ..++. +||+..|+.+-+++|+..
T Consensus 143 ~~~~-~~-~p--~~~~~-vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 143 LEKL-GI-PP--EEILF-VGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp HHHH-TS-SG--GGEEE-EESSHHHHHHHHHTTSEE
T ss_pred HHHc-CC-Cc--ceEEE-EeCCHHHHHHHHHcCCeE
Confidence 2222 11 22 23444 899999999999999875
No 121
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=93.12 E-value=0.94 Score=45.55 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=16.5
Q ss_pred eCCchhhHHHHHhcCCCC
Q 002634 835 FGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 835 FGNR~tDV~aYR~VGIp~ 852 (898)
+||+..|+.+=+++|++.
T Consensus 165 igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 165 VDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred EeCcHhhHHHHHHCCCEE
Confidence 789999999999999974
No 122
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=93.03 E-value=0.38 Score=49.02 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=65.7
Q ss_pred CeEEEEecCCCcccccccCccCC-C--C----------CCCC-CchHHHHHHHHHHHCCCeEEEEcc--ChhhHHHHHHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMP-L--V----------GKDW-TQSGVAKLFSAIKENGYQLLFLSA--RAIVQAYLTRS 772 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP-~--l----------GKDW-th~GVAkLy~~I~~NGYkILYLSA--RpigqAd~TR~ 772 (898)
+|+||||+|+||-.--.--|+.| + . |..- -.++|..+++.|+.+|++|-+.|- .| +..++
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P----~~A~~ 78 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP----DWARE 78 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H----HHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh----HHHHH
Confidence 68999999999985322223332 2 1 1111 257999999999999999999984 45 34444
Q ss_pred HHHHhhhCCCCCC--CCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 773 FLLNLKQDGNALP--NGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 773 wL~~v~Q~G~~LP--~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
-|..+ .++ .|+. .+-..+|.. .| |.+. =|..-++.|+.--.-.+.-... |+|...-+..=+++||
T Consensus 79 ~L~~l-----~i~~~~~~~-~~~~~~F~~--~e-I~~g---sK~~Hf~~i~~~tgI~y~eMlF-FDDe~~N~~~v~~lGV 145 (169)
T PF12689_consen 79 LLKLL-----EIDDADGDG-VPLIEYFDY--LE-IYPG---SKTTHFRRIHRKTGIPYEEMLF-FDDESRNIEVVSKLGV 145 (169)
T ss_dssp HHHHT-----T-C-----------CCECE--EE-ESSS----HHHHHHHHHHHH---GGGEEE-EES-HHHHHHHHTTT-
T ss_pred HHHhc-----CCCcccccc-ccchhhcch--hh-eecC---chHHHHHHHHHhcCCChhHEEE-ecCchhcceeeEecCc
Confidence 44433 222 1111 111123331 12 3322 2777777666443334556677 9998888888888999
Q ss_pred CC
Q 002634 851 PK 852 (898)
Q Consensus 851 p~ 852 (898)
.+
T Consensus 146 ~~ 147 (169)
T PF12689_consen 146 TC 147 (169)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 123
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=92.89 E-value=0.11 Score=53.00 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=31.7
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHH
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQA 767 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqA 767 (898)
+|++|+||||..++.. + + ...++++ .+++|.+|+++|||+....
T Consensus 1 li~~DlDgTLl~~~~~--~--------~--~~~~~~~-~~~~gi~~viaTGR~~~~v 44 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG--L--------A--SFVELLR-GSGDAVGFGIATGRSVESA 44 (236)
T ss_pred CeEEeccccccCCHHH--H--------H--HHHHHHH-hcCCCceEEEEeCCCHHHH
Confidence 4789999999985421 1 1 1225556 4788999999999988654
No 124
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=92.66 E-value=0.13 Score=49.55 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=44.7
Q ss_pred eEEEEecCCCcccccccCccCCC---------CCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPL---------VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~---------lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~ 775 (898)
|++|+|+||||..+...... +. -..-+.+||+.+++..+.+ .|.++..|+.....+.....+|.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PYDFKIIDQRGGYYVKLRPGLDEFLEELSK-HYEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T-SEEEETEEEEEEEEE-TTHHHHHHHHHH-HCEEEEE-SS-HHHHHHHHHHHT
T ss_pred CEEEEeCCCcEEEEeecCCC-CcccceeccccceeEeeCchHHHHHHHHHH-hceEEEEEeehhhhhhHHHHhhh
Confidence 68999999999987654322 10 0011247999999999954 59999999999888888888877
No 125
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=92.55 E-value=0.15 Score=53.56 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=34.1
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHH---HCCCeEEEEccChhhHHHHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIK---ENGYQLLFLSARAIVQAYLT 770 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~---~NGYkILYLSARpigqAd~T 770 (898)
++++++|+|||++..+ ..+.+.|..-++ ..+-.|+|+|||...++...
T Consensus 2 ~~ll~sDlD~Tl~~~~--------------~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~ 52 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGD--------------DEALARLEELLEQQARPEILFVYVTGRSLESVLRL 52 (247)
T ss_dssp SEEEEEETBTTTBHCH--------------HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHH
T ss_pred CEEEEEECCCCCcCCC--------------HHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHH
Confidence 4789999999999322 245666666665 66789999999999876544
No 126
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=92.24 E-value=0.51 Score=46.98 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLE 818 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~ 818 (898)
.+|+.++.+.++++||++..+|+...... +..|..+.= ..+.+. ++..+. ...+||+ .+++.
T Consensus 77 ~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~---~~~l~~~~l--~~~f~~--i~~~~~--------~~~~KP~---~~~~~ 138 (205)
T TIGR01454 77 FPGVPELLAELRADGVGTAIATGKSGPRA---RSLLEALGL--LPLFDH--VIGSDE--------VPRPKPA---PDIVR 138 (205)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCchHHH---HHHHHHcCC--hhheee--EEecCc--------CCCCCCC---hHHHH
Confidence 46899999999999999999999765543 334443200 011111 111111 1123443 22223
Q ss_pred HHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCC
Q 002634 819 DIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKG 853 (898)
Q Consensus 819 dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~ 853 (898)
.+...+.-.....+. +||+..|+.+=+++|++.-
T Consensus 139 ~~~~~~~~~~~~~l~-igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 139 EALRLLDVPPEDAVM-VGDAVTDLASARAAGTATV 172 (205)
T ss_pred HHHHHcCCChhheEE-EcCCHHHHHHHHHcCCeEE
Confidence 222222111122344 8999999999999999853
No 127
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=92.16 E-value=0.39 Score=53.22 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=44.8
Q ss_pred EeecCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 703 YLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 703 YLW~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
++|.. .++|+||+||||..++-. + .-..+||.++...|+++|+++..+|+.+...+ +..|..
T Consensus 123 ~~~~~-~~~i~~D~D~TL~~~~~~--v------~irdp~V~EtL~eLkekGikLaIvTNg~Re~v---~~~Le~ 184 (303)
T PHA03398 123 LVWEI-PHVIVFDLDSTLITDEEP--V------RIRDPFVYDSLDELKERGCVLVLWSYGNREHV---VHSLKE 184 (303)
T ss_pred eEeee-ccEEEEecCCCccCCCCc--c------ccCChhHHHHHHHHHHCCCEEEEEcCCChHHH---HHHHHH
Confidence 44433 589999999999986321 1 11248999999999999999999996644433 555664
No 128
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=91.83 E-value=0.37 Score=58.00 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=39.3
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHC-CCeEEEEccChhh
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKEN-GYQLLFLSARAIV 765 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~N-GYkILYLSARpig 765 (898)
..++|++|+||||+..+.. -...-.++.+.++++++.+. |..|+.+|||+..
T Consensus 491 ~~rLi~~D~DGTL~~~~~~------~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~ 543 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFAPD------PELAVPDKELRDLLRRLAADPNTDVAIISGRDRD 543 (726)
T ss_pred cceEEEEecCccccCCCCC------cccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHH
Confidence 4689999999999973211 11122467889999999984 9999999999854
No 129
>PLN03017 trehalose-phosphatase
Probab=91.70 E-value=0.38 Score=54.48 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=41.3
Q ss_pred cCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHH
Q 002634 706 KWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLT 770 (898)
Q Consensus 706 ~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~T 770 (898)
+....+|++|+||||+-- .+.-......+...+.+++|+ +|++|..+|||+.......
T Consensus 108 ~~k~~llflD~DGTL~Pi------v~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 165 (366)
T PLN03017 108 RGKQIVMFLDYDGTLSPI------VDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNF 165 (366)
T ss_pred cCCCeEEEEecCCcCcCC------cCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHh
Confidence 345677889999999920 111111235678889999998 8899999999998765544
No 130
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=91.35 E-value=0.41 Score=49.87 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=36.1
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCC-CeEEEEccChh
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENG-YQLLFLSARAI 764 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NG-YkILYLSARpi 764 (898)
..++++|+||||+.. .+.-......+++.++.+.|.+.. ..+.++|||+.
T Consensus 3 ~~~l~lD~DGTL~~~------~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~ 53 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI------VPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKF 53 (244)
T ss_pred cEEEEEecCccccCC------cCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence 468999999999962 111222345688999999997764 56779999965
No 131
>PLN02382 probable sucrose-phosphatase
Probab=91.14 E-value=0.34 Score=55.08 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=35.9
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHH
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYL 769 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~ 769 (898)
.-+|++|+||||..++-- +.-+..-...+++++.++|-.|++.|||+..++..
T Consensus 9 ~~lI~sDLDGTLL~~~~~--------~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~ 61 (413)
T PLN02382 9 RLMIVSDLDHTMVDHHDP--------ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKE 61 (413)
T ss_pred CEEEEEcCCCcCcCCCCc--------cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHH
Confidence 457899999999975200 01122334556677888999999999998655443
No 132
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=90.42 E-value=2 Score=44.07 Aligned_cols=52 Identities=27% Similarity=0.169 Sum_probs=40.0
Q ss_pred EeecCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCC--eEEEEccChh
Q 002634 703 YLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGY--QLLFLSARAI 764 (898)
Q Consensus 703 YLW~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGY--kILYLSARpi 764 (898)
.|-+.+=|+||+|.|.|||. -.++-.++-+++.++++++.+- +|+.+|-.+-
T Consensus 35 ~Lk~~Gik~li~DkDNTL~~----------~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG 88 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNTLTP----------PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAG 88 (168)
T ss_pred hhhhcCceEEEEcCCCCCCC----------CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 35566779999999999997 2234446678888999988765 5999999863
No 133
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=90.23 E-value=0.63 Score=46.34 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=49.5
Q ss_pred CCCeEEEEecCCCcccccccCccCC-------------------C-CCC--CC--CchHHHHHHHHHHHCCCeEEEEccC
Q 002634 707 WNAKIVISDVDGTITKSDVLGQFMP-------------------L-VGK--DW--TQSGVAKLFSAIKENGYQLLFLSAR 762 (898)
Q Consensus 707 ~~~KVVISDIDGTITkSD~lGhilP-------------------~-lGK--DW--th~GVAkLy~~I~~NGYkILYLSAR 762 (898)
....++|.|+|.||..|........ + ++. .+ ..||+.++...++++ |++..+|+-
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~ 82 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG 82 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC
Confidence 4567899999999998865421110 0 110 11 268999999999855 999999999
Q ss_pred hhhHHHHHHHHHH
Q 002634 763 AIVQAYLTRSFLL 775 (898)
Q Consensus 763 pigqAd~TR~wL~ 775 (898)
+...|...-++|.
T Consensus 83 ~~~yA~~vl~~ld 95 (156)
T TIGR02250 83 TRAYAQAIAKLID 95 (156)
T ss_pred cHHHHHHHHHHhC
Confidence 9998888777764
No 134
>PLN02151 trehalose-phosphatase
Probab=89.19 E-value=0.66 Score=52.39 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=42.1
Q ss_pred eecCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHH
Q 002634 704 LWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQA 767 (898)
Q Consensus 704 LW~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqA 767 (898)
+......++++|+||||+- |.+.-..-...+++.+.++.|+ +++++.++|||+....
T Consensus 93 ~~~~~~~ll~lDyDGTL~P------Iv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l 149 (354)
T PLN02151 93 KSEGKQIVMFLDYDGTLSP------IVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCREKV 149 (354)
T ss_pred hhcCCceEEEEecCccCCC------CCCCcccccCCHHHHHHHHHHh-cCCCEEEEECCCHHHH
Confidence 3445567889999999994 2233333346789999999998 6789999999987543
No 135
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=89.06 E-value=0.79 Score=47.15 Aligned_cols=110 Identities=24% Similarity=0.335 Sum_probs=65.0
Q ss_pred CCeEEEEecCCCcccccccCccCCC--CCCCC----CchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPL--VGKDW----TQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDG 781 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~--lGKDW----th~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G 781 (898)
.-|.+|+|||||||+.- +-| -|.-. +..|.. .+.|.+.|-++-++|||.-.+... =.+.+ |
T Consensus 7 ~IkLli~DVDGvLTDG~-----ly~~~~Gee~KaFnv~DG~G--ik~l~~~Gi~vAIITGr~s~ive~---Ra~~L---G 73 (170)
T COG1778 7 NIKLLILDVDGVLTDGK-----LYYDENGEEIKAFNVRDGHG--IKLLLKSGIKVAIITGRDSPIVEK---RAKDL---G 73 (170)
T ss_pred hceEEEEeccceeecCe-----EEEcCCCceeeeeeccCcHH--HHHHHHcCCeEEEEeCCCCHHHHH---HHHHc---C
Confidence 35789999999999842 211 12211 222322 255668899999999997654322 22221 1
Q ss_pred CCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 782 NALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 782 ~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
-. .+|. ++ .+ |.+++.+|+.-..-...- .|-.||-..|.-+.+++|++.
T Consensus 74 I~-----------~~~q-----G~---~d--K~~a~~~L~~~~~l~~e~-~ayiGDD~~Dlpvm~~vGls~ 122 (170)
T COG1778 74 IK-----------HLYQ-----GI---SD--KLAAFEELLKKLNLDPEE-VAYVGDDLVDLPVMEKVGLSV 122 (170)
T ss_pred Cc-----------eeee-----ch---Hh--HHHHHHHHHHHhCCCHHH-hhhhcCccccHHHHHHcCCcc
Confidence 11 1222 11 11 888888777543322222 233688899999999999984
No 136
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=88.89 E-value=1.2 Score=44.40 Aligned_cols=94 Identities=14% Similarity=0.228 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~ 816 (898)
.+|+.++++.++++||++..+|..+..... .|+.....-...| --++.+. ++-.+|| +.|+. +
T Consensus 86 ~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~---~~~~~~~~l~~~f--d~v~~s~---------~~~~~KP~p~~~~~-~ 150 (199)
T PRK09456 86 RPEVIAIMHKLREQGHRVVVLSNTNRLHTT---FWPEEYPEVRAAA--DHIYLSQ---------DLGMRKPEARIYQH-V 150 (199)
T ss_pred CHHHHHHHHHHHhCCCcEEEEcCCchhhHH---HHHhhchhHHHhc--CEEEEec---------ccCCCCCCHHHHHH-H
Confidence 479999999999999999999998754322 2222110000001 0112221 2223344 33432 2
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
++++. + ++. . .+. +||+..|+.+-+++|+..
T Consensus 151 ~~~~~-~-~p~-~-~l~-vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 151 LQAEG-F-SAA-D-AVF-FDDNADNIEAANALGITS 181 (199)
T ss_pred HHHcC-C-Chh-H-eEE-eCCCHHHHHHHHHcCCEE
Confidence 33332 1 111 2 333 799999999999999975
No 137
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=88.04 E-value=1.9 Score=41.33 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~ 816 (898)
.+|+.++++.++++||++..+|+.+... .. .+.+. +-..+.+. ++.+ .++..+||+ .|+..
T Consensus 87 ~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~---~~~~~--~l~~~f~~-i~~~---------~~~~~~KP~~~~~~~~- 149 (183)
T TIGR01509 87 LPGVEPLLEALRARGKKLALLTNSPRDH-AV---LVQEL--GLRDLFDV-VIFS---------GDVGRGKPDPDIYLLA- 149 (183)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCchHH-HH---HHHhc--CCHHHCCE-EEEc---------CCCCCCCCCHHHHHHH-
Confidence 3788899999999999999999987655 21 22211 00000111 1111 122234543 34332
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
++.+. -.....+. +||+..|+.+=+++|+..
T Consensus 150 ~~~~~----~~~~~~~~-vgD~~~di~aA~~~G~~~ 180 (183)
T TIGR01509 150 LKKLG----LKPEECLF-VDDSPAGIEAAKAAGMHT 180 (183)
T ss_pred HHHcC----CCcceEEE-EcCCHHHHHHHHHcCCEE
Confidence 22222 11223444 899999999999999854
No 138
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=86.78 E-value=3.9 Score=44.98 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=69.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCce-----eeCCCCCCcchhhhhcccCcHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPV-----VISPDGLFPSLFREVIRRAPHEFK 813 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPl-----LLSPd~Lf~ALrREvi~Rkpe~FK 813 (898)
.+|+.+|+..++++|+++..+||-.. ..++..|+.. |..-|..++ .+..++.+..+....++. . =|
T Consensus 123 ~pG~~efl~~L~~~GIpv~IvS~G~~---~~Ie~vL~~l---gl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~-~--~K 193 (277)
T TIGR01544 123 KDGYENFFDKLQQHSIPVFIFSAGIG---NVLEEVLRQA---GVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHT-F--NK 193 (277)
T ss_pred CcCHHHHHHHHHHCCCcEEEEeCCcH---HHHHHHHHHc---CCCCcCceEEeeeEEECCCCeEeCCCCCcccc-c--cc
Confidence 57999999999999999999998544 5555556543 111133333 122333222221111111 0 14
Q ss_pred HH-HHHHHHHhCC--CCCCcEEEEeCCchhhHHHHHhcCCCC-CCEEEECCCCceeeecccccchhhhHHhhh
Q 002634 814 IA-CLEDIKKLFP--SDYNPFYAGFGNRDTDELSYRKIGIPK-GKIFIINPKGEVAISHRIDVKSYTSLHTLV 882 (898)
Q Consensus 814 ie-~L~dIr~LFP--~~~nPFyAgFGNR~tDV~aYR~VGIp~-~RIFiInpkGel~~~~~~~~~SY~~L~~~V 882 (898)
.+ ++......|. ......++ +||..+|+.| .-|||. ..|..|+= |.......-..|....|+|
T Consensus 194 ~~~v~~~~~~~~~~~~~~~~vI~-vGDs~~Dl~m--a~g~~~~~~~l~igf---ln~~~e~~l~~y~~~~Div 260 (277)
T TIGR01544 194 NHDVALRNTEYFNQLKDRSNIIL-LGDSQGDLRM--ADGVANVEHILKIGY---LNDRVDELLEKYMDSYDIV 260 (277)
T ss_pred HHHHHHHHHHHhCccCCcceEEE-ECcChhhhhH--hcCCCcccceEEEEe---cccCHHHHHHHHHHhCCEE
Confidence 43 2323333332 12233555 9999999999 668865 55666542 2111111123787777765
No 139
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=86.55 E-value=1.7 Score=43.11 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=46.0
Q ss_pred eEEEEecCCCcccccccCccC-CC-----C--C-C--C---CCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFM-PL-----V--G-K--D---WTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhil-P~-----l--G-K--D---Wth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~ 775 (898)
+.+|.|+|+||-.+... ... +. + + + . +.+||+.++...++++ |.|+..|+-....|....+.|.
T Consensus 2 ~~lvlDLDeTLi~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ld 79 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFK-MPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILD 79 (162)
T ss_pred cEEEEcCCCCcCCCCCC-CCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHC
Confidence 67999999999987433 100 00 0 1 0 1 2479999999999988 9999999988777776665554
No 140
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=85.65 E-value=1.6 Score=47.61 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=43.8
Q ss_pred ecCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCC-eEEEEccChh
Q 002634 705 WKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGY-QLLFLSARAI 764 (898)
Q Consensus 705 W~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGY-kILYLSARpi 764 (898)
-+...+.+++|+||||+. +.++-...++-+++.++.++|....- .+.++|||+.
T Consensus 14 ~~a~~~~~~lDyDGTl~~------i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~ 68 (266)
T COG1877 14 LNARKRLLFLDYDGTLTE------IVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSL 68 (266)
T ss_pred ccccceEEEEeccccccc------cccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCH
Confidence 355678999999999997 46777778888999999999987643 4778999965
No 141
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=85.64 E-value=4.4 Score=47.85 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=69.1
Q ss_pred CeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc
Q 002634 709 AKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP 788 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP 788 (898)
..+|..+.||++.-- +.=+|-..+|+.++++.++++||++..+|+.....+.. .++.+ +++
T Consensus 385 ~~~~~~~~~~~~~g~--------~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~---ia~~l-----gi~--- 445 (562)
T TIGR01511 385 STSVLVAVNGELAGV--------FALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKA---VAKEL-----GIN--- 445 (562)
T ss_pred CEEEEEEECCEEEEE--------EEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHH---HHHHc-----CCc---
Confidence 456677788876541 11245678999999999999999999999987754444 33332 332
Q ss_pred eeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 789 VVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 789 lLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
.|. +. .| .=|.+.+++++. . .... +-+||..+|+.+.++.|+.
T Consensus 446 -------~~~----~~---~p-~~K~~~v~~l~~---~-~~~v-~~VGDg~nD~~al~~A~vg 488 (562)
T TIGR01511 446 -------VRA----EV---LP-DDKAALIKELQE---K-GRVV-AMVGDGINDAPALAQADVG 488 (562)
T ss_pred -------EEc----cC---Ch-HHHHHHHHHHHH---c-CCEE-EEEeCCCccHHHHhhCCEE
Confidence 111 11 12 137777777775 2 2333 3489999999999999874
No 142
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=85.58 E-value=1.1 Score=47.68 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCC-----CceeeCCCCCCcchh-hhhcccCcHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPN-----GPVVISPDGLFPSLF-REVIRRAPHEF 812 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~-----GPlLLSPd~Lf~ALr-REvi~Rkpe~F 812 (898)
-+||.+|++.|+++|.++..+||-=..++.....-| ++|. --+++..++-|..|. .+.+.+.- =
T Consensus 90 T~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L--------gi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsg--g 159 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL--------GIPKSNIYANELLFDKDGKYLGFDTNEPTSDSG--G 159 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh--------CCcHhhhhhheeeeccCCcccccccCCccccCC--c
Confidence 479999999999999999999998887777766543 3333 234555555444332 12222222 2
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeeecccc-cchhhhH
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRID-VKSYTSL 878 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~~~~~-~~SY~~L 878 (898)
|.+.+..|+.-++ +.. .+..||..||..|. |+.. .-|..-|.++.+..+. .++|..-
T Consensus 160 Ka~~i~~lrk~~~--~~~-~~mvGDGatDlea~-----~pa~-afi~~~g~~~r~~vk~nak~~~~~ 217 (227)
T KOG1615|consen 160 KAEVIALLRKNYN--YKT-IVMVGDGATDLEAM-----PPAD-AFIGFGGNVIREGVKANAKWYVTD 217 (227)
T ss_pred cHHHHHHHHhCCC--hhe-eEEecCCccccccC-----Cchh-hhhccCCceEcHhhHhccHHHHHH
Confidence 7888888887442 333 44599999999875 4443 4446667776666554 3577653
No 143
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=85.49 E-value=2.9 Score=41.82 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCC-CCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGN-ALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 816 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~-~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~ 816 (898)
+|+.++.+.|+++||++..+|+..... .+..|+.+ |- .+-+ .++.+. ++...|| +.|+. +
T Consensus 97 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~---~~~~l~~~---~l~~~f~-~i~~~~---------~~~~~KP~~~~~~~-~ 159 (221)
T TIGR02253 97 PGVRDTLMELRESGYRLGIITDGLPVK---QWEKLERL---GVRDFFD-AVITSE---------EEGVEKPHPKIFYA-A 159 (221)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHhC---ChHHhcc-EEEEec---------cCCCCCCCHHHHHH-H
Confidence 588899999999999999999986432 23334432 10 0011 122221 1222344 33332 2
Q ss_pred HHHHHHhCCCCCCcEEEEeCCch-hhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRD-TDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~-tDV~aYR~VGIp~ 852 (898)
++. +.-.....+. +||+. +|+.+=+++|+.+
T Consensus 160 ~~~----~~~~~~~~~~-igDs~~~di~~A~~aG~~~ 191 (221)
T TIGR02253 160 LKR----LGVKPEEAVM-VGDRLDKDIKGAKNLGMKT 191 (221)
T ss_pred HHH----cCCChhhEEE-ECCChHHHHHHHHHCCCEE
Confidence 222 2211123444 89997 8999999999987
No 144
>PLN02580 trehalose-phosphatase
Probab=85.37 E-value=1.5 Score=50.10 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhH
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQ 766 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigq 766 (898)
...++++|.||||+- |.+.-......+++.++++.|+.. +++.++|||+...
T Consensus 118 k~~~LfLDyDGTLaP------Iv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~ 169 (384)
T PLN02580 118 KKIALFLDYDGTLSP------IVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDK 169 (384)
T ss_pred CCeEEEEecCCccCC------CCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHH
Confidence 456788899999995 233344445678999999999877 5899999997643
No 145
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=85.11 E-value=3.2 Score=43.93 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=78.7
Q ss_pred CeEEEEecCCCccccccc---C--ccCCC-------------CCCCCCc-----hHHHHHHHHHHHCCCeEEEEccChhh
Q 002634 709 AKIVISDVDGTITKSDVL---G--QFMPL-------------VGKDWTQ-----SGVAKLFSAIKENGYQLLFLSARAIV 765 (898)
Q Consensus 709 ~KVVISDIDGTITkSD~l---G--hilP~-------------lGKDWth-----~GVAkLy~~I~~NGYkILYLSARpig 765 (898)
+-.|-||||.|+.-|..- | .+.|- +-+.|.. +-+.+|...-...|-+|.|+|||.-+
T Consensus 63 Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~g 142 (237)
T COG3700 63 PIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPG 142 (237)
T ss_pred CeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 456889999999876422 2 12231 3344443 33446666666789999999999998
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHH-HHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHH
Q 002634 766 QAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHE-FKIACLEDIKKLFPSDYNPFYAGFGNRDTDELS 844 (898)
Q Consensus 766 qAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~-FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~a 844 (898)
-.+.+..-|... -+---+-||.+..| ..+|.. -|..+|.+- +.-.- |||.++|+.+
T Consensus 143 k~d~vsk~Lak~---F~i~~m~pv~f~Gd-----------k~k~~qy~Kt~~i~~~--------~~~Ih-YGDSD~Di~A 199 (237)
T COG3700 143 KTDTVSKTLAKN---FHITNMNPVIFAGD-----------KPKPGQYTKTQWIQDK--------NIRIH-YGDSDNDITA 199 (237)
T ss_pred cccccchhHHhh---cccCCCcceeeccC-----------CCCcccccccHHHHhc--------CceEE-ecCCchhhhH
Confidence 888777777753 22222345554433 223332 244443321 22223 7899999999
Q ss_pred HHhcCCCCCCEEE
Q 002634 845 YRKIGIPKGKIFI 857 (898)
Q Consensus 845 YR~VGIp~~RIFi 857 (898)
-|.+|+-.-||..
T Consensus 200 AkeaG~RgIRilR 212 (237)
T COG3700 200 AKEAGARGIRILR 212 (237)
T ss_pred HHhcCccceeEEe
Confidence 9999998888853
No 146
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=84.89 E-value=6 Score=40.61 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=43.5
Q ss_pred EEEEecCCCcccccccC-c--cCCCCCCCCC------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhh
Q 002634 711 IVISDVDGTITKSDVLG-Q--FMPLVGKDWT------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQ 779 (898)
Q Consensus 711 VVISDIDGTITkSD~lG-h--ilP~lGKDWt------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q 779 (898)
..+-|.+|+++-+|..| . ++=....+|+ .+.+++++..+++.|.+||-+|.-+. ...++|+..+.+
T Consensus 8 F~~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~---~~~~~~~~~i~~ 82 (203)
T cd03016 8 FEADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV---ESHIKWIEDIEE 82 (203)
T ss_pred eEEecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH---HHHHHHHhhHHH
Confidence 34456677777666666 2 1212455665 35788999999999999999987653 344557666543
No 147
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=84.17 E-value=5.3 Score=46.90 Aligned_cols=103 Identities=20% Similarity=0.315 Sum_probs=67.6
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCC-CeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENG-YQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP 788 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NG-YkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP 788 (898)
.++.+..||++..- +.-+|-..+|+.++.+.++++| |++..+|+.+...+.. .++.+ ++
T Consensus 365 ~~~~v~~~~~~~g~--------i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~---i~~~l-----gi---- 424 (556)
T TIGR01525 365 TVVFVAVDGELLGV--------IALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEA---VAAEL-----GI---- 424 (556)
T ss_pred EEEEEEECCEEEEE--------EEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHH---HHHHh-----CC----
Confidence 44555566654431 1345778899999999999999 9999999987765444 34432 22
Q ss_pred eeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 789 VVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 789 lLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
+..|... .| .=|.+.+++++. .+ . -.+-+||+.+|+.+.++.|+
T Consensus 425 -----~~~f~~~-------~p-~~K~~~v~~l~~---~~-~-~v~~vGDg~nD~~al~~A~v 468 (556)
T TIGR01525 425 -----DEVHAEL-------LP-EDKLAIVKELQE---EG-G-VVAMVGDGINDAPALAAADV 468 (556)
T ss_pred -----CeeeccC-------CH-HHHHHHHHHHHH---cC-C-EEEEEECChhHHHHHhhCCE
Confidence 1222211 11 136778888775 12 2 34458999999999999985
No 148
>PTZ00445 p36-lilke protein; Provisional
Probab=83.87 E-value=9.7 Score=40.95 Aligned_cols=147 Identities=12% Similarity=-0.005 Sum_probs=88.1
Q ss_pred eecCCCeEEEEecCCCcccccccCccCCC-CCCCC---CchHHHHHHHHHHHCCCeEEEEccChh------------hHH
Q 002634 704 LWKWNAKIVISDVDGTITKSDVLGQFMPL-VGKDW---TQSGVAKLFSAIKENGYQLLFLSARAI------------VQA 767 (898)
Q Consensus 704 LW~~~~KVVISDIDGTITkSD~lGhilP~-lGKDW---th~GVAkLy~~I~~NGYkILYLSARpi------------gqA 767 (898)
|...+=|+|++|+|-||..-+..|-+-|. -+.+. ..+..-.+..++++.|.+|+.+|=.+. .-.
T Consensus 38 L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~ 117 (219)
T PTZ00445 38 LNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGD 117 (219)
T ss_pred HHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechH
Confidence 45567799999999998875555544453 11111 234577889999999999999986654 335
Q ss_pred HHHHHHHHHhhhCCCCCCCCceeeCCCCCC---cchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHH
Q 002634 768 YLTRSFLLNLKQDGNALPNGPVVISPDGLF---PSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELS 844 (898)
Q Consensus 768 d~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf---~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~a 844 (898)
++.+.-|+.-+ +.+----+..-+-++| .-.++....++...+|.--|+.+..-+.-...-.+. |+|+..-|.+
T Consensus 118 ~li~~~lk~s~---~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LF-IDD~~~NVea 193 (219)
T PTZ00445 118 RMVEAALKKSK---CDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILF-IDDDMNNCKN 193 (219)
T ss_pred HHHHHHHHhcC---ccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEe-ecCCHHHHHH
Confidence 57777776321 1110000111111111 112344555555556666566666544433344555 8999999999
Q ss_pred HHhcCCCCCC
Q 002634 845 YRKIGIPKGK 854 (898)
Q Consensus 845 YR~VGIp~~R 854 (898)
-+++|+...+
T Consensus 194 A~~lGi~ai~ 203 (219)
T PTZ00445 194 ALKEGYIALH 203 (219)
T ss_pred HHHCCCEEEE
Confidence 9999997653
No 149
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=83.57 E-value=1.5 Score=45.22 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=29.4
Q ss_pred EEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCC-eEEEEccChhhH
Q 002634 713 ISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGY-QLLFLSARAIVQ 766 (898)
Q Consensus 713 ISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGY-kILYLSARpigq 766 (898)
.+|+||||+.- .+.-......+++.+++++|..... .+..+|||+...
T Consensus 1 ~lDyDGTL~p~------~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPI------VDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp EEE-TTTSS---------S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CcccCCccCCC------CCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 47999999962 2333344567899999999987754 688999998876
No 150
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=82.99 E-value=1.6 Score=43.68 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.1
Q ss_pred CeEEEEecCCCccccc
Q 002634 709 AKIVISDVDGTITKSD 724 (898)
Q Consensus 709 ~KVVISDIDGTITkSD 724 (898)
-++||||+||||.++.
T Consensus 2 ~~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTS 17 (221)
T ss_pred ceEEEEeCCCCCcCCC
Confidence 3789999999999975
No 151
>PRK10671 copA copper exporting ATPase; Provisional
Probab=82.60 E-value=6.8 Score=48.30 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHH
Q 002634 735 KDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKI 814 (898)
Q Consensus 735 KDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKi 814 (898)
.|-.++|+.++.+.+++.||+++.+|+.....+.... +.+ +++. .|..+ .|+ -|.
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia---~~l-----gi~~---------~~~~~-------~p~-~K~ 702 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA---KEA-----GIDE---------VIAGV-------LPD-GKA 702 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHc-----CCCE---------EEeCC-------CHH-HHH
Confidence 5667899999999999999999999998776544333 322 2221 11111 133 288
Q ss_pred HHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 815 ACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 815 e~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
+++++++.. .... +.+||..+|+.+.+++|+
T Consensus 703 ~~i~~l~~~----~~~v-~~vGDg~nD~~al~~Agv 733 (834)
T PRK10671 703 EAIKRLQSQ----GRQV-AMVGDGINDAPALAQADV 733 (834)
T ss_pred HHHHHHhhc----CCEE-EEEeCCHHHHHHHHhCCe
Confidence 888888752 2333 449999999999999988
No 152
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=82.59 E-value=2.6 Score=52.49 Aligned_cols=57 Identities=14% Similarity=0.307 Sum_probs=42.1
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHH-HHCCCeEEEEccChhhHHHHHHHHHH
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAI-KENGYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I-~~NGYkILYLSARpigqAd~TR~wL~ 775 (898)
..+++++|+||||+..... ...+.+++.+++++| ++.|..|..+|||+.. ..+.|+.
T Consensus 595 ~~rlI~LDyDGTLlp~~~~--------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~---~L~~~f~ 652 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI--------DKSPSSKSIDILNTLCRDKNNMVFIVSARSRK---TLADWFS 652 (854)
T ss_pred cCeEEEEecCCcccCCccc--------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHH---HHHHHhC
Confidence 5789999999999964211 122457899999998 6779999999999763 3455554
No 153
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=82.25 E-value=3.7 Score=43.25 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~ 816 (898)
.+|+.++++.|+++||++..+|+.+....... +..... ..|. + + .+..|. ..+.+||+ .|.. +
T Consensus 97 ypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~---~~~~~~--~~L~--~-~--f~~~fd----~~~g~KP~p~~y~~-i 161 (220)
T TIGR01691 97 YPDVPPALEAWLQLGLRLAVYSSGSVPAQKLL---FGHSDA--GNLT--P-Y--FSGYFD----TTVGLKTEAQSYVK-I 161 (220)
T ss_pred CcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHH---Hhhccc--cchh--h-h--cceEEE----eCcccCCCHHHHHH-H
Confidence 57899999999999999999998766543332 221100 0110 0 0 112222 11223443 2322 2
Q ss_pred HHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
++.+. + ++. . .+. +||+..|+.+=+++|+.+
T Consensus 162 ~~~lg-v-~p~-e-~lf-VgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 162 AGQLG-S-PPR-E-ILF-LSDIINELDAARKAGLHT 192 (220)
T ss_pred HHHhC-c-Chh-H-EEE-EeCCHHHHHHHHHcCCEE
Confidence 33332 1 122 2 334 789999999999999975
No 154
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=80.13 E-value=8.4 Score=41.18 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLED 819 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~d 819 (898)
+|+.+|++.++.+|-++=.+|++.-..+++-..|+..+-. .|..= ++..... . .+ -...|+.|=++ .+.
T Consensus 95 PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~---~f~~~-v~~d~~~-v---~~--gKP~Pdi~l~A-~~~ 163 (222)
T KOG2914|consen 95 PGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFK---NFSHV-VLGDDPE-V---KN--GKPDPDIYLKA-AKR 163 (222)
T ss_pred CcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHH---hcCCC-eecCCcc-c---cC--CCCCchHHHHH-HHh
Confidence 6999999999999999999999988888888888775522 12211 1111111 0 11 12345544332 222
Q ss_pred HHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 820 IKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 820 Ir~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+. ...--....|.|...-+.|=+++|.++
T Consensus 164 l~----~~~~~k~lVfeds~~Gv~aa~aagm~v 192 (222)
T KOG2914|consen 164 LG----VPPPSKCLVFEDSPVGVQAAKAAGMQV 192 (222)
T ss_pred cC----CCCccceEEECCCHHHHHHHHhcCCeE
Confidence 22 211123556999999999999999875
No 155
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=79.59 E-value=2.9 Score=45.40 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=36.4
Q ss_pred CCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChh
Q 002634 707 WNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAI 764 (898)
Q Consensus 707 ~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpi 764 (898)
+...+|-.||||||.. -+-+| +.++..|..+++.||+||+||+...
T Consensus 5 ~~~~lIFtDlD~TLl~----------~~ye~--~pA~pv~~el~d~G~~Vi~~SSKT~ 50 (274)
T COG3769 5 QMPLLIFTDLDGTLLP----------HSYEW--QPAAPVLLELKDAGVPVILCSSKTR 50 (274)
T ss_pred ccceEEEEcccCcccC----------CCCCC--CccchHHHHHHHcCCeEEEeccchH
Confidence 4567888999999976 23355 3467788999999999999999765
No 156
>PRK13190 putative peroxiredoxin; Provisional
Probab=79.49 E-value=10 Score=39.04 Aligned_cols=126 Identities=20% Similarity=0.324 Sum_probs=69.8
Q ss_pred ecCCCcccccccCcc--CCCCCCCCC------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhC-CCCCC
Q 002634 715 DVDGTITKSDVLGQF--MPLVGKDWT------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQD-GNALP 785 (898)
Q Consensus 715 DIDGTITkSD~lGhi--lP~lGKDWt------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~-G~~LP 785 (898)
|.+|+++.++..|.. +=+.-.+|+ .+..++++.+++++|.+||-+|.-+. ..-++|++.+.+. |..+|
T Consensus 15 ~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~---~~~~~w~~~~~~~~g~~~~ 91 (202)
T PRK13190 15 TTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI---YSHIAWLRDIEERFGIKIP 91 (202)
T ss_pred cCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHhHHHhcCCCce
Confidence 455666666655541 112345665 35788899999999999999987543 2334666654332 22222
Q ss_pred CCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCcee
Q 002634 786 NGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVA 865 (898)
Q Consensus 786 ~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~ 865 (898)
=|++.-+++ .+...|. . +.. ..|++.--+|+||++|.|+
T Consensus 92 -fPll~D~~~-----------------------~ia~~yg----v----~~~---------~~g~~~p~~fiId~~G~I~ 130 (202)
T PRK13190 92 -FPVIADIDK-----------------------ELAREYN----L----IDE---------NSGATVRGVFIIDPNQIVR 130 (202)
T ss_pred -EEEEECCCh-----------------------HHHHHcC----C----ccc---------cCCcEEeEEEEECCCCEEE
Confidence 245543321 1121111 0 000 1134456679999999998
Q ss_pred eeccc---ccchhhhHHhhhhh
Q 002634 866 ISHRI---DVKSYTSLHTLVND 884 (898)
Q Consensus 866 ~~~~~---~~~SY~~L~~~Vd~ 884 (898)
..... ...++..|-.+++.
T Consensus 131 ~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 131 WMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH
Confidence 65421 12477777666654
No 157
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=79.22 E-value=3.7 Score=40.09 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=57.1
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHH
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFK 813 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FK 813 (898)
-.|...+++.++.+.|++.|+++..+||....-+......| +|++ ...|. ++. .+|+ -|
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l--------gi~~-------~~v~a----~~~-~kP~-~k 182 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL--------GIFD-------SIVFA----RVI-GKPE-PK 182 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT--------TSCS-------EEEEE----SHE-TTTH-HH
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeecccccccccccccc--------cccc-------ccccc----ccc-cccc-ch
Confidence 44667889999999999999999999998776555444332 2211 00111 111 2443 24
Q ss_pred --HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcC
Q 002634 814 --IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIG 849 (898)
Q Consensus 814 --ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VG 849 (898)
..+++.++. .+ ... +.+||..+|+.|-+++|
T Consensus 183 ~~~~~i~~l~~--~~--~~v-~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 183 IFLRIIKELQV--KP--GEV-AMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHHHHHHHHTC--TG--GGE-EEEESSGGHHHHHHHSS
T ss_pred hHHHHHHHHhc--CC--CEE-EEEccCHHHHHHHHhCc
Confidence 555555541 12 233 44899999999999876
No 158
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=78.70 E-value=18 Score=38.41 Aligned_cols=100 Identities=17% Similarity=0.293 Sum_probs=70.1
Q ss_pred CCCCCchHHHHHHHH-HHHCCCeEEEEccChh-hHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHH
Q 002634 734 GKDWTQSGVAKLFSA-IKENGYQLLFLSARAI-VQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHE 811 (898)
Q Consensus 734 GKDWth~GVAkLy~~-I~~NGYkILYLSARpi-gqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~ 811 (898)
-++|=+..|++|++. +++..---|.||||.. ..+...+.-|.. .+|-.--|.|.|.. .....--.
T Consensus 51 w~gwWNe~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s-----~~L~Fd~v~LKp~~--------~~~~sTm~ 117 (197)
T PF10307_consen 51 WEGWWNENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLAS-----KGLEFDAVCLKPEN--------QRFSSTMD 117 (197)
T ss_pred ccchhhHHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhc-----CCCCccEEEeCccc--------ccCccccH
Confidence 345667888888876 4444566789999996 777777777663 45554445555430 11112346
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc
Q 002634 812 FKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI 848 (898)
Q Consensus 812 FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V 848 (898)
||..||.++...|+. -.-+.. |+||..-+..+|..
T Consensus 118 fK~~~l~~ll~~Y~~-~~eI~I-YeDR~~hvk~Fr~F 152 (197)
T PF10307_consen 118 FKQAFLEDLLHTYKN-AEEIRI-YEDRPKHVKGFRDF 152 (197)
T ss_pred HHHHHHHHHHHhcCC-CCEEEE-EcCCHHHHHHHHHH
Confidence 999999999988874 355666 99999999999985
No 159
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=77.63 E-value=1.9 Score=45.58 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
.||..++|..+++++-+|+.+|| ||-...+.-|.++
T Consensus 75 dp~fKef~e~ike~di~fiVvSs---Gm~~fI~~lfe~i 110 (220)
T COG4359 75 DPGFKEFVEWIKEHDIPFIVVSS---GMDPFIYPLFEGI 110 (220)
T ss_pred CccHHHHHHHHHHcCCCEEEEeC---CCchHHHHHHHhh
Confidence 46777888888888888888887 5555566666655
No 160
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=77.11 E-value=19 Score=35.64 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=40.5
Q ss_pred eEEEEecCC-----CcccccccCcc--CCCCCCCCC------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 710 KIVISDVDG-----TITKSDVLGQF--MPLVGKDWT------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 710 KVVISDIDG-----TITkSD~lGhi--lP~lGKDWt------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
...+-|++| ++..++..|.. +-+....|. -+.+.+++.++++.|..|+-+|.-+. .....|++.
T Consensus 7 ~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~---~~~~~~~~~ 83 (173)
T cd03015 7 DFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH---FSHLAWRNT 83 (173)
T ss_pred CCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH---HHHHHHHHh
Confidence 345556666 56666655532 222334553 34677889999989999999987543 234567665
Q ss_pred h
Q 002634 777 L 777 (898)
Q Consensus 777 v 777 (898)
+
T Consensus 84 ~ 84 (173)
T cd03015 84 P 84 (173)
T ss_pred h
Confidence 4
No 161
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=76.02 E-value=8.3 Score=38.36 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie~ 816 (898)
.+|+.++++.++++ |++..+|+............+... .+ .+..+. ..++..+|| +.|.. +
T Consensus 99 ~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~-----~~--------fd~i~~--~~~~~~~KP~~~~~~~-~ 161 (224)
T TIGR02254 99 LPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLF-----PF--------FDDIFV--SEDAGIQKPDKEIFNY-A 161 (224)
T ss_pred CccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcH-----hh--------cCEEEE--cCccCCCCCCHHHHHH-H
Confidence 46888999999999 999999997654443332221100 00 111111 112222344 33442 2
Q ss_pred HHHHHHhCCCCCCcEEEEeCCch-hhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRD-TDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~-tDV~aYR~VGIp~ 852 (898)
++.+.++ .+. ..+. +||+. .|+.+-+++|++.
T Consensus 162 ~~~~~~~-~~~--~~v~-igD~~~~di~~A~~~G~~~ 194 (224)
T TIGR02254 162 LERMPKF-SKE--EVLM-IGDSLTADIKGGQNAGLDT 194 (224)
T ss_pred HHHhcCC-Cch--heEE-ECCCcHHHHHHHHHCCCcE
Confidence 3333121 122 2344 79987 7999999999986
No 162
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=75.30 E-value=8.6 Score=38.47 Aligned_cols=26 Identities=4% Similarity=0.244 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChh
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAI 764 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpi 764 (898)
.+|+.++++.|+++||++..+|....
T Consensus 96 ~~~~~~~L~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 96 RPSMMAAIKTLRAKGFKTACITNNFP 121 (211)
T ss_pred ChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence 57999999999999999999998643
No 163
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=75.03 E-value=1.3 Score=44.08 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=13.1
Q ss_pred eEEEEecCCCccccc
Q 002634 710 KIVISDVDGTITKSD 724 (898)
Q Consensus 710 KVVISDIDGTITkSD 724 (898)
++||||+||||.+|.
T Consensus 1 ~~viFD~DGTLiDs~ 15 (197)
T TIGR01548 1 QALVLDMDGVMADVS 15 (197)
T ss_pred CceEEecCceEEech
Confidence 369999999999875
No 164
>PLN02811 hydrolase
Probab=75.01 E-value=13 Score=37.94 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHH-HHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCc--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAY-LTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAP--HEFKIA 815 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd-~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkp--e~FKie 815 (898)
.+||.++++.++++||++..+|+....... .+..++. + ..+.+. .+..+ ..++-..|| +.|..
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~-l----~~~f~~--i~~~~------~~~~~~~KP~p~~~~~- 145 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGE-L----FSLMHH--VVTGD------DPEVKQGKPAPDIFLA- 145 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHH-H----HhhCCE--EEECC------hhhccCCCCCcHHHHH-
Confidence 589999999999999999999987543221 1111111 0 011111 22222 002222333 33332
Q ss_pred HHHHHH--HhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 816 CLEDIK--KLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 816 ~L~dIr--~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+++++. . +.+. -.+. +||+..|+.+=+++|+++
T Consensus 146 a~~~~~~~~-~~~~--~~v~-IgDs~~di~aA~~aG~~~ 180 (220)
T PLN02811 146 AARRFEDGP-VDPG--KVLV-FEDAPSGVEAAKNAGMSV 180 (220)
T ss_pred HHHHhCCCC-CCcc--ceEE-EeccHhhHHHHHHCCCeE
Confidence 223321 1 2121 2333 899999999999999975
No 165
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=72.25 E-value=14 Score=43.33 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=59.7
Q ss_pred CCCCCchHHHHHHHHHHHCCC-eEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHH
Q 002634 734 GKDWTQSGVAKLFSAIKENGY-QLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEF 812 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGY-kILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~F 812 (898)
-+|-..+|+.++.+.+++.|+ ++..+|+.+.. .++..++.+ ++ +..|... .| .=
T Consensus 359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~---~a~~i~~~l-----gi---------~~~f~~~-------~p-~~ 413 (536)
T TIGR01512 359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRA---VAERVAREL-----GI---------DEVHAEL-------LP-ED 413 (536)
T ss_pred EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHH---HHHHHHHHc-----CC---------hhhhhcc-------Cc-HH
Confidence 456778999999999999999 99999998664 444455543 22 1112111 11 12
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
|.+.+++++.- ... .+-+||..+|+.+.++.|+
T Consensus 414 K~~~i~~l~~~----~~~-v~~vGDg~nD~~al~~A~v 446 (536)
T TIGR01512 414 KLEIVKELREK----YGP-VAMVGDGINDAPALAAADV 446 (536)
T ss_pred HHHHHHHHHhc----CCE-EEEEeCCHHHHHHHHhCCE
Confidence 77788887752 233 3448999999999999986
No 166
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=70.39 E-value=7.7 Score=42.30 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=34.9
Q ss_pred eCCchhhHHHHHhcCCCCCCEEEECCCCceeeecccccchhhhHHhhhhhcCC
Q 002634 835 FGNRDTDELSYRKIGIPKGKIFIINPKGEVAISHRIDVKSYTSLHTLVNDMFP 887 (898)
Q Consensus 835 FGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~~~~~~~SY~~L~~~Vd~~FP 887 (898)
|-|-..-...|+..|| +||+.++.....+.+..++..+..|.+.++.+|=
T Consensus 125 ~aDv~~a~e~w~~~g~---~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfD 174 (254)
T KOG2630|consen 125 YADVLPAIERWSGEGV---RVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFD 174 (254)
T ss_pred cchhHHHHHHHhhcCc---eEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhh
Confidence 3388888999999999 9999998766555444444455556666555553
No 167
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=70.26 E-value=11 Score=39.61 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=46.6
Q ss_pred cCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHH
Q 002634 706 KWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFL 774 (898)
Q Consensus 706 ~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL 774 (898)
..+.|++|-|||+||.++-.... -+.-..+||+-++.+.+.+ .|.|+.-||.....++..-.-|
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~~----~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPAE----TGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCCcEEEEeCCCceEcccccCC----CceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHHh
Confidence 35678999999999997421111 2333568999999999987 7999999998766666554443
No 168
>PRK09449 dUMP phosphatase; Provisional
Probab=69.63 E-value=25 Score=35.44 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcH--HHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPH--EFKIAC 816 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe--~FKie~ 816 (898)
.+|+.++++.|+ +||++..+|..... .++..|... +|.. . .+..+. ..++-.+||+ .|. .+
T Consensus 97 ~~g~~~~L~~L~-~~~~~~i~Tn~~~~---~~~~~l~~~-----~l~~---~--fd~v~~--~~~~~~~KP~p~~~~-~~ 159 (224)
T PRK09449 97 LPGAVELLNALR-GKVKMGIITNGFTE---LQQVRLERT-----GLRD---Y--FDLLVI--SEQVGVAKPDVAIFD-YA 159 (224)
T ss_pred CccHHHHHHHHH-hCCeEEEEeCCcHH---HHHHHHHhC-----ChHH---H--cCEEEE--ECccCCCCCCHHHHH-HH
Confidence 468999999998 68999999986543 333334432 1100 0 111111 1122234554 222 12
Q ss_pred HHHHHHhCCCCCCcEEEEeCCch-hhHHHHHhcCCCC
Q 002634 817 LEDIKKLFPSDYNPFYAGFGNRD-TDELSYRKIGIPK 852 (898)
Q Consensus 817 L~dIr~LFP~~~nPFyAgFGNR~-tDV~aYR~VGIp~ 852 (898)
++.+. +.|+. . .+. +||+. +|+.+=+++|+..
T Consensus 160 ~~~~~-~~~~~-~-~~~-vgD~~~~Di~~A~~aG~~~ 192 (224)
T PRK09449 160 LEQMG-NPDRS-R-VLM-VGDNLHSDILGGINAGIDT 192 (224)
T ss_pred HHHcC-CCCcc-c-EEE-EcCCcHHHHHHHHHCCCcE
Confidence 23322 11221 2 333 78997 6999999999975
No 169
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=69.44 E-value=21 Score=44.86 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCce---eeCCCCCCcchh---------
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPV---VISPDGLFPSLF--------- 801 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPl---LLSPd~Lf~ALr--------- 801 (898)
=+|..++++.+..+.+++.|.+++.+||....-+..+..-+. -.-+...+ .++... +..+.
T Consensus 534 ~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~g------i~~~~~~v~~~~~~g~~-l~~~~~~~~~~~~~ 606 (917)
T TIGR01116 534 MLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIG------IFSPDEDVTFKSFTGRE-FDEMGPAKQRAACR 606 (917)
T ss_pred eeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcC------CCCCCccccceeeeHHH-HhhCCHHHHHHhhh
Confidence 358889999999999999999999999987555544433222 11111111 111000 00000
Q ss_pred -hhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 802 -REVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 802 -REvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
--+..|--..-|.++++.++. .+ -..+..||..+|+.|.++++|-
T Consensus 607 ~~~v~ar~~P~~K~~iV~~lq~---~g--~~va~iGDG~ND~~alk~AdVG 652 (917)
T TIGR01116 607 SAVLFSRVEPSHKSELVELLQE---QG--EIVAMTGDGVNDAPALKKADIG 652 (917)
T ss_pred cCeEEEecCHHHHHHHHHHHHh---cC--CeEEEecCCcchHHHHHhCCee
Confidence 012233333458888887775 22 2456699999999999998663
No 170
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=68.15 E-value=2.6 Score=41.85 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.1
Q ss_pred eEEEEecCCCcccccc
Q 002634 710 KIVISDVDGTITKSDV 725 (898)
Q Consensus 710 KVVISDIDGTITkSD~ 725 (898)
|+||||+||||.++..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 6899999999999754
No 171
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=65.11 E-value=23 Score=44.88 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=68.0
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCc------------------------e
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGP------------------------V 789 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GP------------------------l 789 (898)
=+|..++++.+..++++++|.+++.+|||....+..+..=+. -++.|. +
T Consensus 565 i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~g-------i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 637 (997)
T TIGR01106 565 MIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG-------IISEGNETVEDIAARLNIPVSQVNPRDAKAC 637 (997)
T ss_pred ccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC-------CCCCCccchhhhhhhccccccccccccccce
Confidence 358889999999999999999999999999876644433221 111110 1
Q ss_pred eeCCCCCC--------cchhh---hhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCC
Q 002634 790 VISPDGLF--------PSLFR---EVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPK 852 (898)
Q Consensus 790 LLSPd~Lf--------~ALrR---Evi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~ 852 (898)
.+....|- ..+.+ -+..|---+-|....+.++. .+ -..+..||..+|+-|.+++ ||..
T Consensus 638 vi~G~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~---~g--~vv~~~GDG~ND~paLk~AdVGiam 708 (997)
T TIGR01106 638 VVHGSDLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQR---QG--AIVAVTGDGVNDSPALKKADIGVAM 708 (997)
T ss_pred EEEhHHhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHH---CC--CEEEEECCCcccHHHHhhCCcceec
Confidence 11111110 00000 13344444468888888886 23 2567899999999999985 7744
No 172
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=64.53 E-value=23 Score=44.79 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=73.7
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG 787 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G 787 (898)
+.-+|.+-|||+++- + +-=.|-.+++++..++.|+++|++++.|||--+.-|..+.+=+-
T Consensus 702 g~tvv~v~vn~~l~g---v-----~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG------------ 761 (951)
T KOG0207|consen 702 GQTVVYVAVNGQLVG---V-----FALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG------------ 761 (951)
T ss_pred CceEEEEEECCEEEE---E-----EEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC------------
Confidence 345667777777764 1 11247778999999999999999999999998887776653221
Q ss_pred ceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHh--cCCCC
Q 002634 788 PVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRK--IGIPK 852 (898)
Q Consensus 788 PlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~--VGIp~ 852 (898)
-+. .|.|+ .|+ -|.+.+++|+. +..+ .|=.||..||.-+..+ +||..
T Consensus 762 -----i~~----V~aev---~P~-~K~~~Ik~lq~----~~~~-VaMVGDGINDaPALA~AdVGIai 810 (951)
T KOG0207|consen 762 -----IDN----VYAEV---LPE-QKAEKIKEIQK----NGGP-VAMVGDGINDAPALAQADVGIAI 810 (951)
T ss_pred -----cce----EEecc---Cch-hhHHHHHHHHh----cCCc-EEEEeCCCCccHHHHhhccceee
Confidence 111 12232 122 28889999986 3334 4448999999999888 47654
No 173
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=64.29 E-value=3 Score=40.24 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.6
Q ss_pred EEEEecCCCccccc
Q 002634 711 IVISDVDGTITKSD 724 (898)
Q Consensus 711 VVISDIDGTITkSD 724 (898)
+||||+||||.++.
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 58999999999975
No 174
>PRK13189 peroxiredoxin; Provisional
Probab=64.28 E-value=59 Score=34.32 Aligned_cols=130 Identities=20% Similarity=0.297 Sum_probs=69.4
Q ss_pred EEecCCCcccccc-cCcc--CCCCCCCCC------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhC-CC
Q 002634 713 ISDVDGTITKSDV-LGQF--MPLVGKDWT------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQD-GN 782 (898)
Q Consensus 713 ISDIDGTITkSD~-lGhi--lP~lGKDWt------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~-G~ 782 (898)
+-+++|++..++. .|.. +=+.-.+|+ ....++++..+++.|.+||-+|.-+. ...++|++.+.+. |.
T Consensus 20 ~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~---~~h~aw~~~~~~~~g~ 96 (222)
T PRK13189 20 VKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV---FSHIKWVEWIKEKLGV 96 (222)
T ss_pred eEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH---HHHHHHHHhHHHhcCc
Confidence 3344555555443 3431 112345665 34677899999999999999986432 2345677765432 22
Q ss_pred CCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCC
Q 002634 783 ALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKG 862 (898)
Q Consensus 783 ~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkG 862 (898)
.+| =|++.-+++ .|...|. ...... -+.+.-.+|+||++|
T Consensus 97 ~i~-fPllsD~~~-----------------------~ia~~yg----v~~~~~------------~~~~~r~tfIID~~G 136 (222)
T PRK13189 97 EIE-FPIIADDRG-----------------------EIAKKLG----MISPGK------------GTNTVRAVFIIDPKG 136 (222)
T ss_pred Ccc-eeEEEcCcc-----------------------HHHHHhC----CCcccc------------CCCceeEEEEECCCC
Confidence 232 133332221 1222111 000100 122445689999999
Q ss_pred ceeeeccc--c-cchhhhHHhhhhhc
Q 002634 863 EVAISHRI--D-VKSYTSLHTLVNDM 885 (898)
Q Consensus 863 el~~~~~~--~-~~SY~~L~~~Vd~~ 885 (898)
.|++.... . -.++..+..+++.+
T Consensus 137 ~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 137 IIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 99866532 1 24777777777754
No 175
>PRK13599 putative peroxiredoxin; Provisional
Probab=63.78 E-value=53 Score=34.59 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=37.9
Q ss_pred EEecCCCccc-ccccCcc--CCCCCCCCC------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 713 ISDVDGTITK-SDVLGQF--MPLVGKDWT------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 713 ISDIDGTITk-SD~lGhi--lP~lGKDWt------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+-+.+|.+.. ++..|.. +=..-.+|+ ....++++.++++.|.+||=+|.-..- ..+.|...+
T Consensus 13 l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~---~~~~w~~~i 83 (215)
T PRK13599 13 VVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVF---SHIKWVEWI 83 (215)
T ss_pred eECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHhH
Confidence 3445555544 3334431 222455665 358889999999999999999976542 333454444
No 176
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=63.75 E-value=16 Score=46.37 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=42.4
Q ss_pred CCeEEEEecCCCccccccc-CccCCCC--CCCCCchHHHHHHHHHHHC-CCeEEEEccChhhHHHHHHHHHH
Q 002634 708 NAKIVISDVDGTITKSDVL-GQFMPLV--GKDWTQSGVAKLFSAIKEN-GYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~l-GhilP~l--GKDWth~GVAkLy~~I~~N-GYkILYLSARpigqAd~TR~wL~ 775 (898)
...++++|.||||+-.... ......+ ..-.+++++.++++.|... +..+..+|||+... ...||.
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~---Le~~fg 658 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSV---LDENFG 658 (934)
T ss_pred cceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHH---HHHHhC
Confidence 4578999999999963111 0000001 0233678999999999865 68899999998743 445553
No 177
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=63.58 E-value=70 Score=29.72 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+.+.+++.++...|..|+-+|... ....++|++.+
T Consensus 44 ~~l~~~~~~~~~~~~~vv~is~d~---~~~~~~~~~~~ 78 (140)
T cd03017 44 CDFRDLYEEFKALGAVVIGVSPDS---VESHAKFAEKY 78 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHh
Confidence 466788888888899999998643 35566777753
No 178
>PRK09449 dUMP phosphatase; Provisional
Probab=63.53 E-value=3.6 Score=41.40 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.1
Q ss_pred eEEEEecCCCccccc
Q 002634 710 KIVISDVDGTITKSD 724 (898)
Q Consensus 710 KVVISDIDGTITkSD 724 (898)
|.||||+||||...+
T Consensus 4 k~iiFDlDGTLid~~ 18 (224)
T PRK09449 4 DWILFDADETLFHFD 18 (224)
T ss_pred cEEEEcCCCchhcch
Confidence 689999999999644
No 179
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=63.33 E-value=3 Score=41.39 Aligned_cols=13 Identities=46% Similarity=0.741 Sum_probs=11.8
Q ss_pred EEEecCCCccccc
Q 002634 712 VISDVDGTITKSD 724 (898)
Q Consensus 712 VISDIDGTITkSD 724 (898)
||||+||||.+|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 6999999999875
No 180
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=62.93 E-value=17 Score=45.13 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=41.4
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHC-CCeEEEEccChhhHHHHHHHHHH
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKEN-GYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~N-GYkILYLSARpigqAd~TR~wL~ 775 (898)
...++++|.||||+-.... ..-| ..-.+.+++.++.++|.+. +..+..+|||+.. ....||.
T Consensus 506 ~~rll~LDyDGTL~~~~~~-~~~p--~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~---~L~~~~~ 568 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNS-QIKE--MDLGLHPELKETLKALCSDPKTTVVVLSRSGKD---ILDKNFG 568 (797)
T ss_pred cCeEEEEecCccccCCCCC-cccc--ccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHH---HHHHHhC
Confidence 4578999999999942100 0001 1233578999999999765 6789999999763 3445554
No 181
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=61.94 E-value=18 Score=38.65 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=73.9
Q ss_pred CeEEEEecCCCccc-ccccCccCCC--------CCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhh
Q 002634 709 AKIVISDVDGTITK-SDVLGQFMPL--------VGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQ 779 (898)
Q Consensus 709 ~KVVISDIDGTITk-SD~lGhilP~--------lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q 779 (898)
.|.+.-||.||+.- |=+.--++|| +.++|-++.|.+.+..+.. -++++..-.....-.|.|+.+
T Consensus 4 ~kaiLlDIEGTv~~iSFVkdvlFPYa~~~lp~fv~e~~e~~~v~~~v~~v~~-------e~g~~~s~E~lva~~~~wiae 76 (229)
T COG4229 4 VKAILLDIEGTVSPISFVKDVLFPYAARKLPDFVRENTEDSEVKKIVDEVLS-------EFGIANSEEALVALLLEWIAE 76 (229)
T ss_pred hhhheeeccccccchhHHHhhhhHHHHHHhHHHHHhhccCChhhHHHHHHHH-------HhCccchHHHHHHHHHHHHhc
Confidence 37789999999984 2222345676 6888888888887777643 244555555555555566532
Q ss_pred CCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHh-CCCCC------CcEEEEeCCchhhHHHHHhcCCCC
Q 002634 780 DGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKL-FPSDY------NPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 780 ~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~L-FP~~~------nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
+ + |..-|+.++.. +..+| .+.|. |...-+..|++.|++
T Consensus 77 d--------------------------~-----K~t~lK~lQG~iWa~Gy~sgelkahlyp---Dav~~ik~wk~~g~~- 121 (229)
T COG4229 77 D--------------------------S-----KDTPLKALQGMIWAHGYESGELKAHLYP---DAVQAIKRWKALGMR- 121 (229)
T ss_pred c--------------------------c-----ccchHHHHHhHHHHhccccCccccccCH---hHHHHHHHHHHcCCc-
Confidence 1 1 22222222211 00111 23443 778888999999985
Q ss_pred CCEEEECCCCceeeecccccchhhhHHhhhhhcC
Q 002634 853 GKIFIINPKGEVAISHRIDVKSYTSLHTLVNDMF 886 (898)
Q Consensus 853 ~RIFiInpkGel~~~~~~~~~SY~~L~~~Vd~~F 886 (898)
+|+...-....|..-.++.-|-.|+.+.+.+|
T Consensus 122 --vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyf 153 (229)
T COG4229 122 --VYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYF 153 (229)
T ss_pred --EEEEcCCCchhHHHhhcccccccHHhhhccee
Confidence 56655533333332223334455555555555
No 182
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=61.68 E-value=4.4 Score=40.55 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=13.8
Q ss_pred eEEEEecCCCccccc
Q 002634 710 KIVISDVDGTITKSD 724 (898)
Q Consensus 710 KVVISDIDGTITkSD 724 (898)
|+||||+||||..++
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 689999999999886
No 183
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=60.95 E-value=34 Score=42.11 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=62.0
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHH
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFK 813 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FK 813 (898)
=+|..++++.+.++.+++.|++++.+||....-+....+-| ++. ..+. + -.|+ =|
T Consensus 443 l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l--------GI~---------~v~a----~---~~Pe-dK 497 (675)
T TIGR01497 443 LKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA--------GVD---------DFIA----E---ATPE-DK 497 (675)
T ss_pred ecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc--------CCC---------EEEc----C---CCHH-HH
Confidence 36888999999999999999999999998655544443222 211 1111 1 1233 39
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
.+.++.+++. + . ..+-.||..+|.-+.+++++.
T Consensus 498 ~~~v~~lq~~---g-~-~VamvGDG~NDapAL~~AdvG 530 (675)
T TIGR01497 498 IALIRQEQAE---G-K-LVAMTGDGTNDAPALAQADVG 530 (675)
T ss_pred HHHHHHHHHc---C-C-eEEEECCCcchHHHHHhCCEe
Confidence 9999999862 2 3 455699999999999998554
No 184
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=60.76 E-value=35 Score=34.85 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChh
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAI 764 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpi 764 (898)
...++++..++..|.+||-+|..+.
T Consensus 57 ~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 57 IQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 4788999999999999999998654
No 185
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=60.27 E-value=3.6 Score=41.05 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=15.6
Q ss_pred hHHHHHh----cCCCCCCEEEECCC
Q 002634 841 DELSYRK----IGIPKGKIFIINPK 861 (898)
Q Consensus 841 DV~aYR~----VGIp~~RIFiInpk 861 (898)
+..+|.. +|+++.+++.|+-.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~l~igD~ 157 (205)
T TIGR01454 133 APDIVREALRLLDVPPEDAVMVGDA 157 (205)
T ss_pred ChHHHHHHHHHcCCChhheEEEcCC
Confidence 4556655 68988888888875
No 186
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=60.09 E-value=5.2 Score=39.08 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeC-CchhhHHHHHhcCCCCCCEEE
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFG-NRDTDELSYRKIGIPKGKIFI 857 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFG-NR~tDV~aYR~VGIp~~RIFi 857 (898)
.++|+.+++. +. .++..=| ++.+-....+.+||+...||.
T Consensus 133 ~~~l~~L~~~---Gi-~~~i~TGD~~~~a~~~~~~lgi~~~~v~a 173 (215)
T PF00702_consen 133 KEALQELKEA---GI-KVAILTGDNESTASAIAKQLGIFDSIVFA 173 (215)
T ss_dssp HHHHHHHHHT---TE-EEEEEESSEHHHHHHHHHHTTSCSEEEEE
T ss_pred hhhhhhhhcc---Cc-ceeeeeccccccccccccccccccccccc
Confidence 4577778762 33 3333345 455556666778997766665
No 187
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=59.27 E-value=42 Score=35.86 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=28.3
Q ss_pred cCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccCh
Q 002634 706 KWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARA 763 (898)
Q Consensus 706 ~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARp 763 (898)
+....+||...|.+++ .+|+.++++.++++|+ ++.+|..+
T Consensus 129 ~~~~~~Vvv~~d~~~~-----------------y~~i~~~l~~L~~~g~-~~i~Tn~d 168 (279)
T TIGR01452 129 EENVGAVVVGYDEHFS-----------------YAKLREACAHLREPGC-LFVATNRD 168 (279)
T ss_pred CCCCCEEEEecCCCCC-----------------HHHHHHHHHHHhcCCC-EEEEeCCC
Confidence 3456667766554443 4899999999998898 55677665
No 188
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=57.76 E-value=41 Score=33.56 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLT 770 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~T 770 (898)
.+++.++++.|+++|+++..+|+++.......
T Consensus 108 ~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~ 139 (197)
T TIGR01548 108 LLTPKGLLRELHRAPKGMAVVTGRPRKDAAKF 139 (197)
T ss_pred ccCHHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 34568999999999999999999976544443
No 189
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=55.45 E-value=50 Score=41.41 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=65.6
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCC-CCceeeCCCCCCcchh----------hh
Q 002634 735 KDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALP-NGPVVISPDGLFPSLF----------RE 803 (898)
Q Consensus 735 KDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP-~GPlLLSPd~Lf~ALr----------RE 803 (898)
.|..++|+.+..+.+++.|++++.+||-...-+..+..-+ ++. .+-..+....+ ..+. -.
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~--------Gi~~~~~~~v~g~~l-~~~~~~~l~~~~~~~~ 596 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL--------GMPSKTSQSVSGEKL-DAMDDQQLSQIVPKVA 596 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------CCCCCCCceeEhHHh-HhCCHHHHHHHhhcCe
Confidence 6888999999999999999999999999876666554332 221 10001111100 0000 01
Q ss_pred hcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 804 VIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 804 vi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
+..|.-.+-|...++.++.. + -..+..||..+|+.|.++++|
T Consensus 597 Vfar~~P~~K~~iv~~lq~~---g--~~v~mvGDGvND~pAl~~AdV 638 (884)
T TIGR01522 597 VFARASPEHKMKIVKALQKR---G--DVVAMTGDGVNDAPALKLADI 638 (884)
T ss_pred EEEECCHHHHHHHHHHHHHC---C--CEEEEECCCcccHHHHHhCCe
Confidence 33333445688888888862 3 245668999999999999754
No 190
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=55.38 E-value=55 Score=30.46 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCC---CeEEEEccChh-hHHHHHHHHHHHh
Q 002634 741 GVAKLFSAIKENG---YQLLFLSARAI-VQAYLTRSFLLNL 777 (898)
Q Consensus 741 GVAkLy~~I~~NG---YkILYLSARpi-gqAd~TR~wL~~v 777 (898)
-+.+++.+++++| ..|+.+|.-+. ......++|++.+
T Consensus 44 ~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~ 84 (142)
T cd02968 44 NLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAF 84 (142)
T ss_pred HHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567777787775 88888887543 2344566777654
No 191
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=54.20 E-value=59 Score=30.64 Aligned_cols=35 Identities=11% Similarity=0.370 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHC--CCeEEEEccChhhHHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKEN--GYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 740 ~GVAkLy~~I~~N--GYkILYLSARpigqAd~TR~wL~~ 776 (898)
+-+.++|+++++. +..|++++..+. ....+.|++.
T Consensus 37 p~l~~l~~~~~~~~~~v~vi~Vs~d~~--~~~~~~~~~~ 73 (132)
T cd02964 37 PKLVEFYEKLKEEGKNFEIVFVSRDRS--EESFNEYFSE 73 (132)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCC--HHHHHHHHhc
Confidence 3455677777764 677888876543 3455666664
No 192
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=54.05 E-value=84 Score=36.40 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=86.2
Q ss_pred EEEecCCCcccccccCccCCC-CCCCCCchHHHHHHHHHH-HCCCeEEEEccChhhHHHHHHHHHHHhhh-CCCCCCCCc
Q 002634 712 VISDVDGTITKSDVLGQFMPL-VGKDWTQSGVAKLFSAIK-ENGYQLLFLSARAIVQAYLTRSFLLNLKQ-DGNALPNGP 788 (898)
Q Consensus 712 VISDIDGTITkSD~lGhilP~-lGKDWth~GVAkLy~~I~-~NGYkILYLSARpigqAd~TR~wL~~v~Q-~G~~LP~GP 788 (898)
-|.=+|=|+|.|+..|+..|+ + .-++.+|++|. ..|++=|.|-|-+.|- +..-.+|..+++ +...+|..-
T Consensus 156 SILvLDYsLt~~~~~~~~yPtQL------~qlv~~Y~~Lv~~~G~~nI~LmGDSAGG-nL~Ls~LqyL~~~~~~~~Pk~~ 228 (374)
T PF10340_consen 156 SILVLDYSLTSSDEHGHKYPTQL------RQLVATYDYLVESEGNKNIILMGDSAGG-NLALSFLQYLKKPNKLPYPKSA 228 (374)
T ss_pred eEEEEeccccccccCCCcCchHH------HHHHHHHHHHHhccCCCeEEEEecCccH-HHHHHHHHHHhhcCCCCCCcee
Confidence 444466778877767777776 3 24778999998 8899878787766542 333334554444 455899999
Q ss_pred eeeCCCCCCcchh-hhhc----ccCcHHHHHHHHHHHHHhCCCC----CCcEEEEeCCchh--hHHHHHhcCCCCCCEEE
Q 002634 789 VVISPDGLFPSLF-REVI----RRAPHEFKIACLEDIKKLFPSD----YNPFYAGFGNRDT--DELSYRKIGIPKGKIFI 857 (898)
Q Consensus 789 lLLSPd~Lf~ALr-REvi----~Rkpe~FKie~L~dIr~LFP~~----~nPFyAgFGNR~t--DV~aYR~VGIp~~RIFi 857 (898)
+++||=--..... .+.- ..+-+..-...+....+.|-.+ ....+.-|.|... |..-|+.+ ++.+.+|+
T Consensus 229 iLISPWv~l~~~~~~~~~~~~~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I-~~~~~vfV 307 (374)
T PF10340_consen 229 ILISPWVNLVPQDSQEGSSYHDNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDI-LKKYSVFV 307 (374)
T ss_pred EEECCCcCCcCCCCCCCccccccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHh-ccCCcEEE
Confidence 9999843221100 0000 0011112222334444444333 1122334666555 88999999 88888998
Q ss_pred ECCCCceee
Q 002634 858 INPKGEVAI 866 (898)
Q Consensus 858 InpkGel~~ 866 (898)
+=-..|+..
T Consensus 308 i~Ge~Evfr 316 (374)
T PF10340_consen 308 IYGEDEVFR 316 (374)
T ss_pred EECCccccH
Confidence 876667653
No 193
>PRK13191 putative peroxiredoxin; Provisional
Probab=53.40 E-value=97 Score=32.62 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=72.2
Q ss_pred EEEecCCCccccc-ccCc--cCCCCCCCCC------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhh-CC
Q 002634 712 VISDVDGTITKSD-VLGQ--FMPLVGKDWT------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQ-DG 781 (898)
Q Consensus 712 VISDIDGTITkSD-~lGh--ilP~lGKDWt------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q-~G 781 (898)
..-+.+|++..++ ..|. ++=+.-.+|+ .+..++++..+++.|.+||=+|..+. ..-++|...+++ .+
T Consensus 17 ~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~---~~h~aw~~~~~~~~~ 93 (215)
T PRK13191 17 EVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN---ISHIEWVMWIEKNLK 93 (215)
T ss_pred EeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH---HHHHHHHhhHHHhcC
Confidence 3344556655544 2343 1112355665 35788999999999999999997654 223455554433 23
Q ss_pred CCCCCCceeeCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCC
Q 002634 782 NALPNGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPK 861 (898)
Q Consensus 782 ~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpk 861 (898)
..+| =|++.-+++ .+...|. .+.. + ..|.+.--+|+||++
T Consensus 94 ~~i~-fPllsD~~~-----------------------~ia~~yg----v~~~---~---------~~~~~~r~tfIID~~ 133 (215)
T PRK13191 94 VEVP-FPIIADPMG-----------------------NVAKRLG----MIHA---E---------SSTATVRAVFIVDDK 133 (215)
T ss_pred CCCc-eEEEECCch-----------------------HHHHHcC----Cccc---c---------cCCceeEEEEEECCC
Confidence 3333 244433321 1222221 1000 0 014455678999999
Q ss_pred Cceeeecccc---cchhhhHHhhhhhc
Q 002634 862 GEVAISHRID---VKSYTSLHTLVNDM 885 (898)
Q Consensus 862 Gel~~~~~~~---~~SY~~L~~~Vd~~ 885 (898)
|.|++..... .+.+..+-.+++.+
T Consensus 134 G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 134 GTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999764322 24777777777654
No 194
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=53.13 E-value=50 Score=30.77 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEcc
Q 002634 740 SGVAKLFSAIKENGYQLLFLSA 761 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSA 761 (898)
+.+.+|++++++.|..|+.++.
T Consensus 43 p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 43 PYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred HHHHHHHHHcCcCCeEEEEecc
Confidence 4566777777767777777764
No 195
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=52.16 E-value=12 Score=40.28 Aligned_cols=35 Identities=17% Similarity=0.528 Sum_probs=26.9
Q ss_pred hHHHHHHHHH--HHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 740 SGVAKLFSAI--KENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 740 ~GVAkLy~~I--~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+|+.++++.+ +..|+.++.+|- +..-.+..||+.+
T Consensus 74 pgm~~~l~~l~~~~~~~~~~IiSD---aNs~fI~~iL~~~ 110 (234)
T PF06888_consen 74 PGMKELLRFLAKNQRGFDLIIISD---ANSFFIETILEHH 110 (234)
T ss_pred ccHHHHHHHHHhcCCCceEEEEeC---CcHhHHHHHHHhC
Confidence 5788889999 457999999985 5556778888764
No 196
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=51.81 E-value=17 Score=32.06 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=22.5
Q ss_pred cCCceEeccccccccccCccEEEEEECCeeeeee
Q 002634 43 STPWYVRFGKFQGVLKGAEKVVRITVNGVEANFH 76 (898)
Q Consensus 43 ssPfhVRFGk~qgvl~~~eK~V~i~VNg~~~~~~ 76 (898)
..||.||+|+.. -|+|++||+++++.
T Consensus 37 ~~~~~i~iGna~--------~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 37 KEPFRIRIGNAG--------AVEVTVNGKPVDLL 62 (77)
T ss_pred CCCEEEEEeCCC--------cEEEEECCEECCCC
Confidence 469999999994 67999999999873
No 197
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=51.81 E-value=5.5 Score=38.12 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.7
Q ss_pred EEEEecCCCccccccc
Q 002634 711 IVISDVDGTITKSDVL 726 (898)
Q Consensus 711 VVISDIDGTITkSD~l 726 (898)
+||||+||||..++..
T Consensus 1 ~vlFDlDgtLv~~~~~ 16 (183)
T TIGR01509 1 AILFDLDGVLVDTSSA 16 (183)
T ss_pred CeeeccCCceechHHH
Confidence 4899999999998654
No 198
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=50.49 E-value=81 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=32.9
Q ss_pred cccccccCc--cCCCCCCCCCc------hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHH
Q 002634 720 ITKSDVLGQ--FMPLVGKDWTQ------SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 720 ITkSD~lGh--ilP~lGKDWth------~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~ 775 (898)
++.++..|. ++-+...+|+. +..++++.++++.|..||-+|.-+. ...+.|..
T Consensus 24 ~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~---~~~~~~~~ 84 (187)
T TIGR03137 24 VTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTH---FVHKAWHD 84 (187)
T ss_pred ecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCH---HHHHHHHh
Confidence 454555553 12223356652 4677888999888999999997653 23445544
No 199
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=49.71 E-value=1.7e+02 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+...+++++++.+|..||-+|... ....++|++..
T Consensus 51 ~~l~~~~~~~~~~~v~vi~Is~d~---~~~~~~~~~~~ 85 (154)
T PRK09437 51 CGLRDNMDELKKAGVVVLGISTDK---PEKLSRFAEKE 85 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHh
Confidence 457789999999999999998653 36666787653
No 200
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=48.52 E-value=53 Score=40.52 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=57.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHH
Q 002634 735 KDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKI 814 (898)
Q Consensus 735 KDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKi 814 (898)
+|-.++++.++++.+++.|++++.+||....-+.... ..+ ++. . +. + -.|+ =|.
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia---~~l-----gi~---~-------~~----~---~~p~-~K~ 619 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA---GEL-----GID---F-------RA----G---LLPE-DKV 619 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH---HHc-----CCC---e-------ec----C---CCHH-HHH
Confidence 4777899999999999999999999998765544443 332 221 0 00 0 1222 388
Q ss_pred HHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcC
Q 002634 815 ACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIG 849 (898)
Q Consensus 815 e~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VG 849 (898)
+.++.++. .. . .+-+||..+|+.+.++.+
T Consensus 620 ~~v~~l~~----~~-~-v~mvGDgiNDapAl~~A~ 648 (741)
T PRK11033 620 KAVTELNQ----HA-P-LAMVGDGINDAPAMKAAS 648 (741)
T ss_pred HHHHHHhc----CC-C-EEEEECCHHhHHHHHhCC
Confidence 88888874 22 3 334799999999999875
No 201
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=46.40 E-value=91 Score=39.52 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=67.8
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCC-CCceeeCCCCCCcch----------hh
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALP-NGPVVISPDGLFPSL----------FR 802 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP-~GPlLLSPd~Lf~AL----------rR 802 (898)
=+|..++++.+..+++++.|.+++.+||....-|..+..=+ ++. .+-..+....+ ..+ +-
T Consensus 576 ~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~--------GI~~~~~~vi~G~~~-~~l~~~el~~~i~~~ 646 (941)
T TIGR01517 576 IKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC--------GILTFGGLAMEGKEF-RRLVYEEMDPILPKL 646 (941)
T ss_pred ccCCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc--------CCCCCCceEeeHHHh-hhCCHHHHHHHhccC
Confidence 36888999999999999999999999998765555444322 221 11112211111 000 00
Q ss_pred hhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCCC
Q 002634 803 EVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPKG 853 (898)
Q Consensus 803 Evi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~~ 853 (898)
.+..|---+-|.+.++.+++ .+ ...|-.||..||+-|.+++ ||..+
T Consensus 647 ~Vfar~sPe~K~~iV~~lq~---~g--~vVam~GDGvNDapALk~AdVGIAmg 694 (941)
T TIGR01517 647 RVLARSSPLDKQLLVLMLKD---MG--EVVAVTGDGTNDAPALKLADVGFSMG 694 (941)
T ss_pred eEEEECCHHHHHHHHHHHHH---CC--CEEEEECCCCchHHHHHhCCcceecC
Confidence 12333333459998998886 23 2567799999999999995 77543
No 202
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=46.33 E-value=57 Score=33.58 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=42.8
Q ss_pred EEEecCC-CcccccccCc--cCCCCCCCCCc------hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 712 VISDVDG-TITKSDVLGQ--FMPLVGKDWTQ------SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 712 VISDIDG-TITkSD~lGh--ilP~lGKDWth------~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
-.=|.|| ||+.||.+|. ++-+-.+|||- -+..+++..+...|+.+|=+|.-+.. ..+.|-.+
T Consensus 14 ~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~---~~~~F~~k 84 (157)
T COG1225 14 ELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPK---SHKKFAEK 84 (157)
T ss_pred EeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHH---HHHHHHHH
Confidence 3445666 7888888886 23346788873 25668888899999999988876553 34455554
No 203
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=44.84 E-value=9.3 Score=35.50 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=12.1
Q ss_pred EEEecCCCcccccc
Q 002634 712 VISDVDGTITKSDV 725 (898)
Q Consensus 712 VISDIDGTITkSD~ 725 (898)
||||+||||..++.
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 79999999998654
No 204
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=43.27 E-value=13 Score=43.84 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINP 860 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInp 860 (898)
|...|+ +.+..+ .+-| ||||+.+|..+...++- -|.|++
T Consensus 177 Kv~rl~---~~~g~~-~~~~-aYgDS~sD~plL~~a~e----~y~V~~ 215 (497)
T PLN02177 177 KRDAVL---KEFGDA-LPDL-GLGDRETDHDFMSICKE----GYMVPR 215 (497)
T ss_pred HHHHHH---HHhCCC-CceE-EEECCccHHHHHHhCCc----cEEeCC
Confidence 665555 333322 2334 59999999999998763 366666
No 205
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=42.89 E-value=85 Score=39.52 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCC-------CCcchh-hhhc
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDG-------LFPSLF-REVI 805 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~-------Lf~ALr-REvi 805 (898)
=.|..++++.+..+.+++.|.+++.+||-...-+..+-+- .++..+.++.-.+- +...+. -.+.
T Consensus 512 l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~--------lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vf 583 (867)
T TIGR01524 512 FLDPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQE--------VGIDANDFLLGADIEELSDEELARELRKYHIF 583 (867)
T ss_pred eeCCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH--------cCCCCCCeeecHhhhhCCHHHHHHHhhhCeEE
Confidence 3588899999999999999999999999766544333321 34433333321110 000000 0222
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCC
Q 002634 806 RRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPK 852 (898)
Q Consensus 806 ~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~ 852 (898)
.|---+-|.+..+.++. .+ -..|-.||..||+-|.+++ ||..
T Consensus 584 Ar~~Pe~K~~iV~~lq~---~G--~vVam~GDGvNDapALk~AdVGIAm 627 (867)
T TIGR01524 584 ARLTPMQKSRIIGLLKK---AG--HTVGFLGDGINDAPALRKADVGISV 627 (867)
T ss_pred EECCHHHHHHHHHHHHh---CC--CEEEEECCCcccHHHHHhCCEEEEe
Confidence 33333458888888886 23 2566689999999999996 5543
No 206
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=42.79 E-value=37 Score=35.88 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=22.7
Q ss_pred eEEEEecCCCcccccc-cCccCCC--------CCCCCCchHHHH
Q 002634 710 KIVISDVDGTITKSDV-LGQFMPL--------VGKDWTQSGVAK 744 (898)
Q Consensus 710 KVVISDIDGTITkSD~-lGhilP~--------lGKDWth~GVAk 744 (898)
++|+.||.||+|--.. .-.++|| +...|.++-+++
T Consensus 2 ~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~ 45 (220)
T TIGR01691 2 KNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVEN 45 (220)
T ss_pred CEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHH
Confidence 6899999999995322 2345787 455666663333
No 207
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=42.75 E-value=41 Score=34.78 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGI 850 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGI 850 (898)
|-..|+.+...+.-.....++ |||..+|+.|.+.+|+
T Consensus 200 K~~~l~~l~~~~gi~~~e~i~-~GD~~NDi~m~~~ag~ 236 (272)
T PRK10530 200 KGKRLTQWVEAQGWSMKNVVA-FGDNFNDISMLEAAGL 236 (272)
T ss_pred hHHHHHHHHHHcCCCHHHeEE-eCCChhhHHHHHhcCc
Confidence 777788777665433344555 9999999999999997
No 208
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=42.40 E-value=14 Score=36.92 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.4
Q ss_pred EEEEecCCCcccccc
Q 002634 711 IVISDVDGTITKSDV 725 (898)
Q Consensus 711 VVISDIDGTITkSD~ 725 (898)
.||||+||||..++.
T Consensus 2 ~viFDldgvL~d~~~ 16 (199)
T PRK09456 2 LYIFDLGNVIVDIDF 16 (199)
T ss_pred EEEEeCCCccccCcH
Confidence 699999999999864
No 209
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=42.21 E-value=12 Score=41.05 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=52.5
Q ss_pred cCCCeEEEEecCCCcccccc--c-----CccCCCCCCCCC-------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHH
Q 002634 706 KWNAKIVISDVDGTITKSDV--L-----GQFMPLVGKDWT-------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTR 771 (898)
Q Consensus 706 ~~~~KVVISDIDGTITkSD~--l-----GhilP~lGKDWt-------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR 771 (898)
..+.|++|.|+|.|+-.|.. . .+..|..-.+-. +|++.++..++.++ |.+|..||-...+|+..-
T Consensus 86 ~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~ 164 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLL 164 (262)
T ss_pred cCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHH
Confidence 56779999999999998863 1 122222111122 57999999999876 999999999999999999
Q ss_pred HHHHH
Q 002634 772 SFLLN 776 (898)
Q Consensus 772 ~wL~~ 776 (898)
++|..
T Consensus 165 D~LD~ 169 (262)
T KOG1605|consen 165 DILDP 169 (262)
T ss_pred HHccC
Confidence 99883
No 210
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=41.79 E-value=2.6e+02 Score=26.26 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
+.+.++++++.+.|..|+-+|.-+ ....+.|++.+
T Consensus 49 ~~l~~~~~~~~~~~v~vi~vs~d~---~~~~~~~~~~~ 83 (149)
T cd03018 49 CALRDSLELFEAAGAEVLGISVDS---PFSLRAWAEEN 83 (149)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCC---HHHHHHHHHhc
Confidence 467788999988899999888654 23567787753
No 211
>COG4996 Predicted phosphatase [General function prediction only]
Probab=40.83 E-value=99 Score=31.87 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=49.1
Q ss_pred eEEEEecCCCcccccccCccCCCC------------CCCC-CchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLV------------GKDW-TQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~l------------GKDW-th~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
++|++|.|||+.+-+-...+-|-+ |.-- -.+.|.++..-.+..||-+ |.-.|+.....-+=|+-
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~---~~~sWN~~~kA~~aLra 77 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYIL---GLASWNFEDKAIKALRA 77 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEE---EEeecCchHHHHHHHHH
Confidence 368999999999854333333321 1111 1345666666666667733 33334444443333442
Q ss_pred hhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHHHH--HHHHHH
Q 002634 777 LKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFKIA--CLEDIK 821 (898)
Q Consensus 777 v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FKie--~L~dIr 821 (898)
+ .+..-||--|+...|..||+- .|+.|+
T Consensus 78 l-----------------~~~~yFhy~ViePhP~K~~ML~~llr~i~ 107 (164)
T COG4996 78 L-----------------DLLQYFHYIVIEPHPYKFLMLSQLLREIN 107 (164)
T ss_pred h-----------------chhhhEEEEEecCCChhHHHHHHHHHHHH
Confidence 2 122224556788888877764 455554
No 212
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=40.75 E-value=16 Score=36.48 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCcccccc
Q 002634 708 NAKIVISDVDGTITKSDV 725 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~ 725 (898)
..++|+||+||||...+.
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 458999999999998654
No 213
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=40.64 E-value=1.7e+02 Score=27.32 Aligned_cols=60 Identities=15% Similarity=0.320 Sum_probs=31.9
Q ss_pred EecCCC-cccccccCcc-CCCCCCCCC------chHHHHHHHHHHHC--CCeEEEEccChhhHHHHHHHHHH
Q 002634 714 SDVDGT-ITKSDVLGQF-MPLVGKDWT------QSGVAKLFSAIKEN--GYQLLFLSARAIVQAYLTRSFLL 775 (898)
Q Consensus 714 SDIDGT-ITkSD~lGhi-lP~lGKDWt------h~GVAkLy~~I~~N--GYkILYLSARpigqAd~TR~wL~ 775 (898)
-|+||. ++.++..|.. +=+....|. .+.+.+++++++++ ++.|+++|.... ....++|++
T Consensus 4 ~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~--~~~~~~~~~ 73 (131)
T cd03009 4 LRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD--EESFNDYFS 73 (131)
T ss_pred cccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC--HHHHHHHHH
Confidence 356665 4444444432 112344453 34666777777765 577888776433 234444444
No 214
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=40.26 E-value=1.2e+02 Score=39.08 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=66.5
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC-----------ceeeCCCCCCcchh-
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG-----------PVVISPDGLFPSLF- 801 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G-----------PlLLSPd~Lf~ALr- 801 (898)
=.|..++++.+..+.+++.|.+++.+||....-+..+..= .++... -..+....| ..+.
T Consensus 643 ~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~--------~Gi~~~~~~~~~~~~~~~~vitG~~l-~~l~~ 713 (1053)
T TIGR01523 643 IYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQE--------VGIIPPNFIHDRDEIMDSMVMTGSQF-DALSD 713 (1053)
T ss_pred eecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH--------cCCCCccccccccccccceeeehHHh-hhcCH
Confidence 3588899999999999999999999999876555444321 233211 011111110 0000
Q ss_pred ---------hhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCC
Q 002634 802 ---------REVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPK 852 (898)
Q Consensus 802 ---------REvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~ 852 (898)
..+..|---.-|.+.++.+++. + ...+..||..+|+-|.+++ ||..
T Consensus 714 ~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~---g--~~Vam~GDGvNDapaLk~AdVGIAm 770 (1053)
T TIGR01523 714 EEVDDLKALCLVIARCAPQTKVKMIEALHRR---K--AFCAMTGDGVNDSPSLKMANVGIAM 770 (1053)
T ss_pred HHHHHHhhcCeEEEecCHHHHHHHHHHHHhc---C--CeeEEeCCCcchHHHHHhCCccEec
Confidence 0123343344688888888862 2 3456799999999999995 6643
No 215
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=39.51 E-value=27 Score=40.62 Aligned_cols=55 Identities=25% Similarity=0.505 Sum_probs=41.2
Q ss_pred cCCCeEEEEecCCCcccccccCccCCCCCCCCC--c-hHHHHHHHHHHHCCCeEEEEccC
Q 002634 706 KWNAKIVISDVDGTITKSDVLGQFMPLVGKDWT--Q-SGVAKLFSAIKENGYQLLFLSAR 762 (898)
Q Consensus 706 ~~~~KVVISDIDGTITkSD~lGhilP~lGKDWt--h-~GVAkLy~~I~~NGYkILYLSAR 762 (898)
+..-|++.||.||||.+.+ -|-+.|.-.-||. + ++..+| ..+.++||++++-|--
T Consensus 72 ~~~~K~i~FD~dgtlI~t~-sg~vf~~~~~dw~~l~~~vp~Kl-ktl~~~g~~l~iftnq 129 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTK-SGKVFPKGSMDWRILFPEVPSKL-KTLYQDGIKLFIFTNQ 129 (422)
T ss_pred CCCcceEEEecCCceeecC-CcceeeccCccceeeccccchhh-hhhccCCeEEEEEecc
Confidence 4568999999999999855 3566777667774 4 444555 7788899999987743
No 216
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=37.91 E-value=14 Score=36.38 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCeEE--EEccChhh----HHHHHHHHHHHhhhCCCC
Q 002634 744 KLFSAIKENGYQLL--FLSARAIV----QAYLTRSFLLNLKQDGNA 783 (898)
Q Consensus 744 kLy~~I~~NGYkIL--YLSARpig----qAd~TR~wL~~v~Q~G~~ 783 (898)
...+.|+++||+++ |||++.-. +..+|+.|+..+...|..
T Consensus 8 ~~~~~l~~aGy~~VgrYl~~~~~~~~~~~k~Lt~~e~~~i~~~Gl~ 53 (136)
T PF08924_consen 8 ASAQALKAAGYRAVGRYLSGSRGGCAMRQKNLTAGEVQDIRAAGLR 53 (136)
T ss_dssp HHHHHHHHT---SEEEESS-BTTTB-----B--HHHHHHHHHTT-E
T ss_pred HHHHHHHHCCCCEEEEEcCCCCCCcccccCCCCHHHHHHHHHCCCE
Confidence 45688899999866 99999876 459999999999776653
No 217
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=37.74 E-value=1.6e+02 Score=36.61 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=65.0
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCc-----chh----h--
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFP-----SLF----R-- 802 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~-----ALr----R-- 802 (898)
=.|..++++++..+.+++.|.+++.+||....-+..+-+= .++... .+..+.+.. .+. .
T Consensus 439 l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~--------lGI~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 508 (755)
T TIGR01647 439 LFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARR--------LGLGTN--IYTADVLLKGDNRDDLPSGELGEM 508 (755)
T ss_pred ccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH--------cCCCCC--CcCHHHhcCCcchhhCCHHHHHHH
Confidence 3588899999999999999999999999877655544432 233321 111111100 000 0
Q ss_pred ----hhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCC
Q 002634 803 ----EVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPK 852 (898)
Q Consensus 803 ----Evi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~ 852 (898)
.+..|---+-|.+.++.+++ .+ -..+-.||..||+-|.+++ ||..
T Consensus 509 ~~~~~vfAr~~Pe~K~~iV~~lq~---~G--~~VamvGDGvNDapAL~~AdVGIAm 559 (755)
T TIGR01647 509 VEDADGFAEVFPEHKYEIVEILQK---RG--HLVGMTGDGVNDAPALKKADVGIAV 559 (755)
T ss_pred HHhCCEEEecCHHHHHHHHHHHHh---cC--CEEEEEcCCcccHHHHHhCCeeEEe
Confidence 01122222348888888886 23 2466689999999999995 6654
No 218
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=36.97 E-value=34 Score=35.66 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..|+.|...+.-....++| |||..+|+.|.+.+|+.
T Consensus 197 Kg~al~~l~~~~gi~~~~v~a-fGD~~NDi~Ml~~ag~~ 234 (270)
T PRK10513 197 KGTGVKSLAEHLGIKPEEVMA-IGDQENDIAMIEYAGVG 234 (270)
T ss_pred hHHHHHHHHHHhCCCHHHEEE-ECCchhhHHHHHhCCce
Confidence 888888888776544445555 99999999999999874
No 219
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=36.91 E-value=85 Score=35.43 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=41.0
Q ss_pred EeecCCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 703 YLWKWNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 703 YLW~~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
++|.. +.+|+||+|.||..+.-. ..-..+.|.+-++.+++.|.-++.-|- |-++..+.=|+.+
T Consensus 117 ~~~~~-phVIVfDlD~TLItd~~~--------v~Ir~~~v~~sL~~Lk~~g~vLvLWSy---G~~eHV~~sl~~~ 179 (297)
T PF05152_consen 117 LVWEP-PHVIVFDLDSTLITDEGD--------VRIRDPAVYDSLRELKEQGCVLVLWSY---GNREHVRHSLKEL 179 (297)
T ss_pred ccCCC-CcEEEEECCCcccccCCc--------cccCChHHHHHHHHHHHcCCEEEEecC---CCHHHHHHHHHHh
Confidence 44533 579999999999875322 123457788889999999975544443 3445555555554
No 220
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=36.75 E-value=2.1e+02 Score=33.34 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=63.2
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHH
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFK 813 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FK 813 (898)
=+|-.++++.+....+++.|++++.+||....-+..+...|. + + .+-...-|
T Consensus 344 l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lg--------i------------~--------~~~~p~~K 395 (499)
T TIGR01494 344 LEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELG--------I------------F--------ARVTPEEK 395 (499)
T ss_pred ecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC--------c------------e--------eccCHHHH
Confidence 356778999999999999999999999999887777776652 1 1 11222358
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCC
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPK 852 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~ 852 (898)
.++++.++. .++ ..+..||..+|..+.++. ||-.
T Consensus 396 ~~~v~~l~~---~g~--~v~~vGDg~nD~~al~~Advgia~ 431 (499)
T TIGR01494 396 AALVEALQK---KGR--VVAMTGDGVNDAPALKKADVGIAM 431 (499)
T ss_pred HHHHHHHHH---CCC--EEEEECCChhhHHHHHhCCCcccc
Confidence 888888875 232 345579999999999986 5444
No 221
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=36.51 E-value=1.4e+02 Score=28.13 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
.+-+.+|+++++.+|..++.|+...... .++|+.+
T Consensus 48 ~p~l~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~~ 82 (146)
T PF08534_consen 48 LPYLNELQEKYKDKGVDVVGVSSDDDPP---VREFLKK 82 (146)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEESSSHH---HHHHHHH
T ss_pred hhhHHhhhhhhccCceEEEEecccCCHH---HHHHHHh
Confidence 3466788888889999999998887766 7777775
No 222
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=36.47 E-value=1.2e+02 Score=38.41 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCC-------CCCCcchhh-hhc
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISP-------DGLFPSLFR-EVI 805 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSP-------d~Lf~ALrR-Evi 805 (898)
=.|..++++.+..+.+++.|.+++.+||-...-+...-+= .++..+.++.-. +.|...+.+ .+.
T Consensus 547 l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~--------lGI~~~~vi~G~el~~~~~~el~~~v~~~~Vf 618 (903)
T PRK15122 547 FLDPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICRE--------VGLEPGEPLLGTEIEAMDDAALAREVEERTVF 618 (903)
T ss_pred ccCccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH--------cCCCCCCccchHhhhhCCHHHHHHHhhhCCEE
Confidence 3588899999999999999999999999765444333321 234333322110 000000000 233
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCCC
Q 002634 806 RRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPKG 853 (898)
Q Consensus 806 ~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~~ 853 (898)
.|---+-|...++.+++ .+ -..|-.||..||+-|.+++ ||..+
T Consensus 619 Ar~sPe~K~~iV~~Lq~---~G--~vVamtGDGvNDaPALk~ADVGIAmg 663 (903)
T PRK15122 619 AKLTPLQKSRVLKALQA---NG--HTVGFLGDGINDAPALRDADVGISVD 663 (903)
T ss_pred EEeCHHHHHHHHHHHHh---CC--CEEEEECCCchhHHHHHhCCEEEEeC
Confidence 33333458888888886 23 3566689999999999995 76543
No 223
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=36.35 E-value=41 Score=33.79 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..|+.+...+.-.....++ |||..+|+.|.+.+|+.
T Consensus 150 K~~~i~~l~~~~~i~~~~~i~-~GD~~NDi~m~~~ag~~ 187 (225)
T TIGR01482 150 KGVAVKKLKEKLGIKPGETLV-CGDSENDIDLFEVPGFG 187 (225)
T ss_pred HHHHHHHHHHHhCCCHHHEEE-ECCCHhhHHHHHhcCce
Confidence 777777777665433334555 99999999999999875
No 224
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=36.31 E-value=2.6e+02 Score=26.03 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCC
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDG 795 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~ 795 (898)
+.+.+++..+...|..||-++.-... ..+.|.+. +.+| -|++.-++.
T Consensus 44 ~~l~~~~~~~~~~~v~vv~V~~~~~~---~~~~~~~~-----~~~~-~p~~~D~~~ 90 (149)
T cd02970 44 RALSKLLPELDALGVELVAVGPESPE---KLEAFDKG-----KFLP-FPVYADPDR 90 (149)
T ss_pred HHHHHHHHHHHhcCeEEEEEeCCCHH---HHHHHHHh-----cCCC-CeEEECCch
Confidence 46778888998899999999865442 23356553 3443 577776664
No 225
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=36.08 E-value=38 Score=35.55 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 812 FKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 812 FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
=|-..|+.|...+.-.....+| |||..||+.|.+.+|+.
T Consensus 188 sKg~al~~l~~~~gi~~~~v~a-fGD~~NDi~Ml~~ag~~ 226 (272)
T PRK15126 188 NKGAALAVLSQHLGLSLADCMA-FGDAMNDREMLGSVGRG 226 (272)
T ss_pred ChHHHHHHHHHHhCCCHHHeEE-ecCCHHHHHHHHHcCCc
Confidence 3888899888776544445555 99999999999999864
No 226
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=35.50 E-value=29 Score=36.13 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcch----hhhhcccCcHHH
Q 002634 737 WTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSL----FREVIRRAPHEF 812 (898)
Q Consensus 737 Wth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~AL----rREvi~Rkpe~F 812 (898)
++.+++.++++.+.++|+++ ++|..+..+.... +. .+..|+ ++.++ .......||+..
T Consensus 138 ~~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~---~~-------~~~~g~-------~~~~i~~~g~~~~~~gKP~~~ 199 (242)
T TIGR01459 138 LDLDEFDELFAPIVARKIPN-ICANPDRGINQHG---IY-------RYGAGY-------YAELIKQLGGKVIYSGKPYPA 199 (242)
T ss_pred CCHHHHHHHHHHHHhCCCcE-EEECCCEeccCCC---ce-------EecccH-------HHHHHHHhCCcEecCCCCCHH
Confidence 77899999999998899997 7788765443211 11 111111 11211 111123455432
Q ss_pred HHH-HHHHHHHhCCCCCCcEEEEeCCc-hhhHHHHHhcCCCC
Q 002634 813 KIA-CLEDIKKLFPSDYNPFYAGFGNR-DTDELSYRKIGIPK 852 (898)
Q Consensus 813 Kie-~L~dIr~LFP~~~nPFyAgFGNR-~tDV~aYR~VGIp~ 852 (898)
-.. +++.+.. -+. ...+. +||+ .+|+.+-++.|+..
T Consensus 200 ~~~~~~~~~~~-~~~--~~~~~-vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 200 IFHKALKECSN-IPK--NRMLM-VGDSFYTDILGANRLGIDT 237 (242)
T ss_pred HHHHHHHHcCC-CCc--ccEEE-ECCCcHHHHHHHHHCCCeE
Confidence 222 3333321 111 12334 8999 69999999999964
No 227
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=35.03 E-value=60 Score=32.89 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..++.+...+.......+ +|||..+|+.|.+.+|+.
T Consensus 180 Kg~al~~l~~~lgi~~~~vi-~~GD~~NDi~ml~~ag~~ 217 (221)
T TIGR02463 180 KGKAANWLKATYNQPDVKTL-GLGDGPNDLPLLEVADYA 217 (221)
T ss_pred HHHHHHHHHHHhCCCCCcEE-EECCCHHHHHHHHhCCce
Confidence 66667777766644333444 499999999999999875
No 228
>PRK10976 putative hydrolase; Provisional
Probab=34.57 E-value=39 Score=35.18 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..|+.|...+.-....++| |||..+|+.|.+.+|+.
T Consensus 191 Kg~al~~l~~~lgi~~~~via-fGD~~NDi~Ml~~ag~~ 228 (266)
T PRK10976 191 KGHALEAVAKKLGYSLKDCIA-FGDGMNDAEMLSMAGKG 228 (266)
T ss_pred hHHHHHHHHHHcCCCHHHeEE-EcCCcccHHHHHHcCCC
Confidence 888888888776544445665 99999999999999875
No 229
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=34.34 E-value=2e+02 Score=29.76 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=66.2
Q ss_pred EecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCC
Q 002634 714 SDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISP 793 (898)
Q Consensus 714 SDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSP 793 (898)
-++++||+. -|.+++ -|.+..+.|++. .+|..-||--.+ +|.++.+ -.++| -
T Consensus 19 ~~v~~tiat---gGklf~---------ev~e~iqeL~d~-V~i~IASgDr~g-------sl~~lae-~~gi~-------~ 70 (152)
T COG4087 19 GKVLYTIAT---GGKLFS---------EVSETIQELHDM-VDIYIASGDRKG-------SLVQLAE-FVGIP-------V 70 (152)
T ss_pred ceEEEEEcc---CcEEcH---------hhHHHHHHHHHh-heEEEecCCcch-------HHHHHHH-HcCCc-------e
Confidence 368899997 445444 355566666666 778888875443 3333211 02222 2
Q ss_pred CCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEEEECCCCce
Q 002634 794 DGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEV 864 (898)
Q Consensus 794 d~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel 864 (898)
.+.|. -.+.+.|...++.++. + +.+.+..||..+|+.|.|+.-+- |-+|.+.|..
T Consensus 71 ~rv~a--------~a~~e~K~~ii~eLkk---~--~~k~vmVGnGaND~laLr~ADlG---I~tiq~e~v~ 125 (152)
T COG4087 71 ERVFA--------GADPEMKAKIIRELKK---R--YEKVVMVGNGANDILALREADLG---ICTIQQEGVP 125 (152)
T ss_pred eeeec--------ccCHHHHHHHHHHhcC---C--CcEEEEecCCcchHHHhhhcccc---eEEeccCCcc
Confidence 22221 1344569999999985 2 34667799999999999997553 3577775443
No 230
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=33.38 E-value=53 Score=36.51 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCEE
Q 002634 812 FKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIF 856 (898)
Q Consensus 812 FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RIF 856 (898)
=|..|++.|+.-|..- +.-|++.||+..-..|-+.+++|-.||=
T Consensus 214 GK~~cFe~I~~Rfg~p-~~~f~~IGDG~eEe~aAk~l~wPFw~I~ 257 (274)
T TIGR01658 214 GKLQCFKWIKERFGHP-KVRFCAIGDGWEECTAAQAMNWPFVKID 257 (274)
T ss_pred chHHHHHHHHHHhCCC-CceEEEeCCChhHHHHHHhcCCCeEEee
Confidence 3999999999999642 4567779999999999999999999883
No 231
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=33.19 E-value=1.9e+02 Score=36.00 Aligned_cols=89 Identities=16% Similarity=0.264 Sum_probs=61.7
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHH
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFK 813 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FK 813 (898)
=+|..++|+.+.++.+++.|.+++.|||-... |...+.+- .++. ..|. |---+=|
T Consensus 442 l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~----TA~aIA~e----lGId---------~v~A--------~~~PedK 496 (679)
T PRK01122 442 LKDIVKPGIKERFAELRKMGIKTVMITGDNPL----TAAAIAAE----AGVD---------DFLA--------EATPEDK 496 (679)
T ss_pred EeccCchhHHHHHHHHHHCCCeEEEECCCCHH----HHHHHHHH----cCCc---------EEEc--------cCCHHHH
Confidence 35788999999999999999999999996544 33333331 2221 1111 1122349
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCC
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPK 852 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~ 852 (898)
.+.++.+++ .+ ...|-.||..||.-|.++. ||..
T Consensus 497 ~~iV~~lQ~---~G--~~VaMtGDGvNDAPALa~ADVGIAM 532 (679)
T PRK01122 497 LALIRQEQA---EG--RLVAMTGDGTNDAPALAQADVGVAM 532 (679)
T ss_pred HHHHHHHHH---cC--CeEEEECCCcchHHHHHhCCEeEEe
Confidence 999999986 23 3466689999999999995 6654
No 232
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=32.84 E-value=43 Score=33.83 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 812 FKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 812 FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
=|-..++.+...+.-.....++ |||..+|+.|.+.+|+.
T Consensus 157 ~Kg~al~~l~~~~~i~~~~~i~-~GD~~NDi~m~~~ag~~ 195 (230)
T PRK01158 157 NKGTGLKKLAELMGIDPEEVAA-IGDSENDLEMFEVAGFG 195 (230)
T ss_pred ChHHHHHHHHHHhCCCHHHEEE-ECCchhhHHHHHhcCce
Confidence 3777778777665433334555 99999999999999887
No 233
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=32.37 E-value=1.1e+02 Score=32.31 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCC
Q 002634 708 NAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNG 787 (898)
Q Consensus 708 ~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~G 787 (898)
+-+.||.|+|-||.-=|. .-.-+-+...+..++.+|-+++.+|. +-......|++.+ ++
T Consensus 27 Gikgvi~DlDNTLv~wd~----------~~~tpe~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l-----~v--- 85 (175)
T COG2179 27 GIKGVILDLDNTLVPWDN----------PDATPELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKL-----GV--- 85 (175)
T ss_pred CCcEEEEeccCceecccC----------CCCCHHHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhc-----CC---
Confidence 348899999999985321 11235677788999999999999998 5567777888764 22
Q ss_pred ceeeCCCCCCcchhhhhcccCcHHHHHH-HHHHHHHhCCCCCCcEEEEeCCc-hhhHHHHHhcCCCC
Q 002634 788 PVVISPDGLFPSLFREVIRRAPHEFKIA-CLEDIKKLFPSDYNPFYAGFGNR-DTDELSYRKIGIPK 852 (898)
Q Consensus 788 PlLLSPd~Lf~ALrREvi~Rkpe~FKie-~L~dIr~LFP~~~nPFyAgFGNR-~tDV~aYR~VGIp~ 852 (898)
+.+++ .+||-..|+. +|+... + ++. + ... .||+ -|||.+=...|+.+
T Consensus 86 ------~fi~~-------A~KP~~~~fr~Al~~m~-l-~~~-~-vvm-VGDqL~TDVlggnr~G~~t 134 (175)
T COG2179 86 ------PFIYR-------AKKPFGRAFRRALKEMN-L-PPE-E-VVM-VGDQLFTDVLGGNRAGMRT 134 (175)
T ss_pred ------ceeec-------ccCccHHHHHHHHHHcC-C-Chh-H-EEE-EcchhhhhhhcccccCcEE
Confidence 12333 2366655555 344333 2 221 2 233 6774 47888777777644
No 234
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.30 E-value=47 Score=35.15 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCC---CCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPS---DYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~---~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..|+.|...+.- ..... +||||..+|+.|.+.+|+.
T Consensus 188 Kg~al~~l~~~lgi~~~~~~~v-iafGDs~NDi~Ml~~ag~g 228 (271)
T PRK03669 188 KDQAANWLIATYQQLSGTRPTT-LGLGDGPNDAPLLDVMDYA 228 (271)
T ss_pred HHHHHHHHHHHHHhhcCCCceE-EEEcCCHHHHHHHHhCCEE
Confidence 88888888776643 32334 4599999999999999764
No 235
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=31.09 E-value=33 Score=37.39 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=26.8
Q ss_pred hhhHHHHhhcccCHHHhhcCCcccccCCCeEEEeCCc-----ccchhhhhH
Q 002634 517 DAAAEAFDAHRISEDEFKSNSASIIKNENLVIRFKER-----YLTWEKAAP 562 (898)
Q Consensus 517 e~~~e~F~eh~Vsye~F~~n~p~Ii~dPnLVVrI~~k-----YynW~~AaP 562 (898)
+++++.|.+|..+ . -+-||+|+||-+|. |.+|+.|.-
T Consensus 170 ~I~e~~i~~~L~~----~-----~~pdpDLlIRTsGe~RlSnFllWQ~aYs 211 (245)
T COG0020 170 DIDEELISSHLYT----S-----GLPDPDLLIRTSGEQRLSNFLLWQSAYS 211 (245)
T ss_pred HcCHHHHHHhhcc----c-----CCCCCCEEEeCCCcccccccHHHHHHhC
Confidence 4667777777666 1 12399999999873 999997754
No 236
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=31.04 E-value=2.5e+02 Score=34.93 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=62.4
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCCCCCcchhhhhcccCcHHHH
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPDGLFPSLFREVIRRAPHEFK 813 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd~Lf~ALrREvi~Rkpe~FK 813 (898)
=+|..++++.+.++.+++.|.+++-+||-...-+....+- .++. ..|. ++ .| +-|
T Consensus 438 l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~e--------lGI~---------~v~A----~~---~P-edK 492 (673)
T PRK14010 438 LKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKE--------AGVD---------RFVA----EC---KP-EDK 492 (673)
T ss_pred eecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH--------cCCc---------eEEc----CC---CH-HHH
Confidence 3688899999999999999999999999876555444322 2221 1121 11 22 349
Q ss_pred HHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCC
Q 002634 814 IACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPK 852 (898)
Q Consensus 814 ie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~ 852 (898)
.+.++.+++ .+ ...|=-||..||.-|.++. ||..
T Consensus 493 ~~iV~~lQ~---~G--~~VaMtGDGvNDAPALa~ADVGIAM 528 (673)
T PRK14010 493 INVIREEQA---KG--HIVAMTGDGTNDAPALAEANVGLAM 528 (673)
T ss_pred HHHHHHHHh---CC--CEEEEECCChhhHHHHHhCCEEEEe
Confidence 999999886 22 2455469999999999996 6654
No 237
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=30.73 E-value=54 Score=37.10 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=40.2
Q ss_pred eEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhh
Q 002634 710 KIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLK 778 (898)
Q Consensus 710 KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~ 778 (898)
..||||-||-|...+ -.-+|+++.++.|+..|-+++++|--+.. .-++|+++..
T Consensus 23 DtfifDcDGVlW~g~------------~~ipGs~e~l~~L~~~gK~i~fvTNNStk---sr~~y~kK~~ 76 (306)
T KOG2882|consen 23 DTFIFDCDGVLWLGE------------KPIPGSPEALNLLKSLGKQIIFVTNNSTK---SREQYMKKFA 76 (306)
T ss_pred CEEEEcCCcceeecC------------CCCCChHHHHHHHHHcCCcEEEEeCCCcc---hHHHHHHHHH
Confidence 469999999999732 22478999999999999999999976543 2334445443
No 238
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=30.23 E-value=32 Score=39.70 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=32.9
Q ss_pred EecceeeeecccccccccccccccCCccccCCCCCCccccCCCCccCCCC
Q 002634 209 SVDGHVLTAPVSASEQTTENVQLSTPQFHLGPGEGAEFCEDNGEFSSSDN 258 (898)
Q Consensus 209 s~dgh~ltap~~~~e~~~e~~ql~~pqfhlgpg~~~~~~~~~~~f~~~~~ 258 (898)
+-.|..++.||- +|..|+||.|+|...---.|||+|..|+-
T Consensus 45 ~~~~~~V~IPir---------~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~ 85 (371)
T TIGR02877 45 SDGKKKIKVPIR---------GLKEYRFRYDWNKQKRVGQGDGNEKVGDV 85 (371)
T ss_pred cCCCceEEccCC---------CCccceEEeCCCCCCeecCCCCCCCCCCC
Confidence 334566777876 57889999999988888889999998864
No 239
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=30.08 E-value=63 Score=37.83 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=47.4
Q ss_pred eeeCCCCCCcchhhhh------------cccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCCCCE
Q 002634 789 VVISPDGLFPSLFREV------------IRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKI 855 (898)
Q Consensus 789 lLLSPd~Lf~ALrREv------------i~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~~RI 855 (898)
||+.-+.|+.||-+-. |-..-.+=|..|+++|+.-|.. ...|++.|+.---..+-+++.+|-.||
T Consensus 374 VlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiGKescFerI~~RFg~--K~~yvvIgdG~eee~aAK~ln~PfwrI 450 (468)
T KOG3107|consen 374 VLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIGKESCFERIQSRFGR--KVVYVVIGDGVEEEQAAKALNMPFWRI 450 (468)
T ss_pred EEEeccchhHHHHHHHHHhcCCcccchhhhhhhhccHHHHHHHHHHHhCC--ceEEEEecCcHHHHHHHHhhCCceEee
Confidence 4666666666655433 3332333388899999999976 345677999988889999999999887
No 240
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=29.76 E-value=54 Score=34.30 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCC--CCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSD--YNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~--~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..++.|...+... ....++ |||..+|+.|++.+|++
T Consensus 177 Kg~ai~~l~~~~~i~~~~~~~~a-~GD~~ND~~Ml~~ag~~ 216 (256)
T TIGR01486 177 KGKAANALKQFYNQPGGAIKVVG-LGDSPNDLPLLEVVDLA 216 (256)
T ss_pred HHHHHHHHHHHHhhcCCCceEEE-EcCCHhhHHHHHHCCEE
Confidence 666666666555322 334555 99999999999999876
No 241
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=29.44 E-value=39 Score=38.08 Aligned_cols=27 Identities=19% Similarity=0.472 Sum_probs=23.2
Q ss_pred CCceEeccccccccccCccEEEEEECCeeeeeeee
Q 002634 44 TPWYVRFGKFQGVLKGAEKVVRITVNGVEANFHMY 78 (898)
Q Consensus 44 sPfhVRFGk~qgvl~~~eK~V~i~VNg~~~~~~Mk 78 (898)
.||.|++|+. ..|+|++||+++++.=+
T Consensus 291 ~p~~v~iG~~--------~~v~i~~nG~~vdl~~~ 317 (331)
T PRK10856 291 APYKLKIGAP--------AAVQIQYQGKPVDLSRF 317 (331)
T ss_pred ceEEEEEcCC--------CceEEEECCEEccCCcc
Confidence 4999999998 46899999999998744
No 242
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=28.48 E-value=2.2e+02 Score=35.66 Aligned_cols=106 Identities=21% Similarity=0.263 Sum_probs=70.0
Q ss_pred EEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCcee
Q 002634 711 IVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVV 790 (898)
Q Consensus 711 VVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlL 790 (898)
+|++-+||.+.- -+.=.|-.++...+..++|++.|.+++.|||-...-+....+=|-
T Consensus 519 ~v~va~dg~~~g--------~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lG--------------- 575 (713)
T COG2217 519 VVFVAVDGKLVG--------VIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELG--------------- 575 (713)
T ss_pred EEEEEECCEEEE--------EEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC---------------
Confidence 678888885443 122357778899999999999999999999987665555443322
Q ss_pred eCCCCCCcchhhhhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHh--cCCCCCC
Q 002634 791 ISPDGLFPSLFREVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRK--IGIPKGK 854 (898)
Q Consensus 791 LSPd~Lf~ALrREvi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~--VGIp~~R 854 (898)
+ +.. +.++ .|+ =|.+.+++++. .+ .+. +=.||..||.-+..+ |||-.+.
T Consensus 576 I--d~v----~Ael---lPe-dK~~~V~~l~~---~g-~~V-amVGDGINDAPALA~AdVGiAmG~ 626 (713)
T COG2217 576 I--DEV----RAEL---LPE-DKAEIVRELQA---EG-RKV-AMVGDGINDAPALAAADVGIAMGS 626 (713)
T ss_pred h--Hhh----eccC---CcH-HHHHHHHHHHh---cC-CEE-EEEeCCchhHHHHhhcCeeEeecC
Confidence 1 121 2221 122 18888888885 23 333 336899999998887 5776553
No 243
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=28.42 E-value=4.6e+02 Score=24.26 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 739 QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 739 h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
.+.+.+++.++...|..|+-+|.-. ....+.|+..
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~---~~~~~~~~~~ 76 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDS---PFSHKAWAEK 76 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhc
Confidence 4677888888888889999888643 3446667664
No 244
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=28.25 E-value=45 Score=32.98 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|...++.|...+.-....+++ |||..+|+.|.+.+|..
T Consensus 187 K~~ai~~l~~~~~i~~~~~~~-~GD~~ND~~Ml~~~~~~ 224 (254)
T PF08282_consen 187 KGSAIKYLLEYLGISPEDIIA-FGDSENDIEMLELAGYS 224 (254)
T ss_dssp HHHHHHHHHHHHTTSGGGEEE-EESSGGGHHHHHHSSEE
T ss_pred HHHHHHHHhhhcccccceeEE-eecccccHhHHhhcCeE
Confidence 777788777666544456666 99999999999999765
No 245
>PLN03190 aminophospholipid translocase; Provisional
Probab=27.83 E-value=2.4e+02 Score=37.21 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=47.4
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCCCCEEEECCCCceeeecc---------------
Q 002634 807 RAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPKGKIFIINPKGEVAISHR--------------- 869 (898)
Q Consensus 807 Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~~RIFiInpkGel~~~~~--------------- 869 (898)
|---.-|.+..+.+++. ...+.++.||..+||-|.+++ || =+.+..|......+
T Consensus 853 R~sP~QKa~IV~~vk~~----~~~vtlaIGDGaNDv~mIq~AdVGI-----GIsG~EG~qA~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 853 RVAPLQKAGIVALVKNR----TSDMTLAIGDGANDVSMIQMADVGV-----GISGQEGRQAVMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred cCCHHHHHHHHHHHHhc----CCcEEEEECCCcchHHHHHhcCeee-----eecCchhHHHHHhhccchhhhHHHHHHHH
Confidence 33334577777777752 134678899999999999996 66 35566665432111
Q ss_pred c-ccchhhhHHhhhhhcCC
Q 002634 870 I-DVKSYTSLHTLVNDMFP 887 (898)
Q Consensus 870 ~-~~~SY~~L~~~Vd~~FP 887 (898)
. +.-+|.+++.++-.+|.
T Consensus 924 vHGr~~y~R~s~~i~y~fY 942 (1178)
T PLN03190 924 VHGHWNYQRMGYMILYNFY 942 (1178)
T ss_pred HhCHHHHHHHHHHHHHHHH
Confidence 1 12289999988887773
No 246
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=27.52 E-value=90 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCC-cEEEEeCCchhhHHHHHhcCCCC
Q 002634 813 KIACLEDIKKLFPSDYN-PFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~n-PFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
|-..++.+..++..... .-..+|||..+|+.|.+.+|++.
T Consensus 182 K~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v 222 (225)
T TIGR02461 182 KGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAF 222 (225)
T ss_pred HHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcE
Confidence 66666666665532111 12345999999999999998863
No 247
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=27.14 E-value=52 Score=34.33 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPK 852 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp~ 852 (898)
|...|+.|...+.-...-++| |||..+|+.|.+.+|...
T Consensus 190 K~~al~~l~~~lgi~~~~v~a-fGD~~ND~~Ml~~ag~gv 228 (264)
T COG0561 190 KGYALQRLAKLLGIKLEEVIA-FGDSTNDIEMLEVAGLGV 228 (264)
T ss_pred hHHHHHHHHHHhCCCHHHeEE-eCCccccHHHHHhcCeee
Confidence 888999888876554333555 999999999999987653
No 248
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=27.06 E-value=69 Score=27.36 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=24.3
Q ss_pred EEEEeCCchhhHHHHHhcCCCCCCEEEECCCCceeee
Q 002634 831 FYAGFGNRDTDELSYRKIGIPKGKIFIINPKGEVAIS 867 (898)
Q Consensus 831 FyAgFGNR~tDV~aYR~VGIp~~RIFiInpkGel~~~ 867 (898)
|...++........|.-.++| .+|+||++|+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P--~~~l~d~~g~v~~~ 113 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLP--TTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEcCcchHHHhcCcCccc--eEEEECCCCcEEEE
Confidence 344466655666666666666 57999999998754
No 249
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=26.13 E-value=83 Score=31.37 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..++.+...+...... .++|||..+|..+++.+|++
T Consensus 164 K~~~~~~~~~~~~~~~~~-~~~~GD~~nD~~~~~~~~~~ 201 (204)
T TIGR01484 164 KGSALQALLKELNGKRDE-ILAFGDSGNDEEMFEVAGLA 201 (204)
T ss_pred hHHHHHHHHHHhCCCHHH-EEEEcCCHHHHHHHHHcCCc
Confidence 777888777665432233 44599999999999999876
No 250
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=25.44 E-value=74 Score=32.26 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..++.+...+.......++ |||..+|+.|.+.+|+.
T Consensus 148 K~~~i~~l~~~~~i~~~~~i~-iGDs~ND~~ml~~ag~~ 185 (215)
T TIGR01487 148 KGVGVEKLKELLGIKPEEVAA-IGDSENDIDLFRVVGFK 185 (215)
T ss_pred hHHHHHHHHHHhCCCHHHEEE-ECCCHHHHHHHHhCCCe
Confidence 777777777665443334555 99999999999999865
No 251
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=24.69 E-value=2.2e+02 Score=36.72 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=26.8
Q ss_pred CCCCCchHHHHHHHHHHHCCCeEEEEccCh
Q 002634 734 GKDWTQSGVAKLFSAIKENGYQLLFLSARA 763 (898)
Q Consensus 734 GKDWth~GVAkLy~~I~~NGYkILYLSARp 763 (898)
=+|..++||.+..+.+++.|.+++.|||-.
T Consensus 628 ieD~lq~~v~etI~~L~~AGIkv~mlTGD~ 657 (1057)
T TIGR01652 628 IEDKLQEGVPETIELLRQAGIKIWVLTGDK 657 (1057)
T ss_pred EhhhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence 357789999999999999999999999853
No 252
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=24.58 E-value=79 Score=32.85 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhcCCC
Q 002634 813 KIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIP 851 (898)
Q Consensus 813 Kie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~VGIp 851 (898)
|-..++.+...+.-.....++ |||..+|+.|.+.+|++
T Consensus 189 K~~~i~~~~~~~~~~~~~~~~-~GD~~nD~~m~~~~~~~ 226 (256)
T TIGR00099 189 KGSALQSLAEALGISLEDVIA-FGDGMNDIEMLEAAGYG 226 (256)
T ss_pred hHHHHHHHHHHcCCCHHHEEE-eCCcHHhHHHHHhCCce
Confidence 888888887766433334555 99999999999999976
No 253
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=24.01 E-value=39 Score=40.36 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=19.7
Q ss_pred HHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 745 LFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 745 Ly~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
.++.++..| +.+.+|+-|..| .+.|++.
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvm---VEpFake 128 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVM---VERFAKE 128 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHH---HHHHHHH
Confidence 344456778 899999988654 5667776
No 254
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=23.92 E-value=3.4e+02 Score=27.46 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=23.4
Q ss_pred cCCCCCCEEEECCCCceeeecccccchhhhHHhhhhhcC
Q 002634 848 IGIPKGKIFIINPKGEVAISHRIDVKSYTSLHTLVNDMF 886 (898)
Q Consensus 848 VGIp~~RIFiInpkGel~~~~~~~~~SY~~L~~~Vd~~F 886 (898)
.|+|. .|+||++|+|+..+.- ..+...|...+..++
T Consensus 141 ~~~P~--t~vid~~G~i~~~~~G-~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPE--TFLIDGNGIIRYRHAG-DLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCe--EEEECCCceEEEEEec-CCCHHHHHHHHHHHH
Confidence 36664 7999999999865542 234555666555544
No 255
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=23.35 E-value=1.8e+02 Score=37.04 Aligned_cols=139 Identities=16% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCC-CCCc--eeeCCCCCCcch---------hh
Q 002634 735 KDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNAL-PNGP--VVISPDGLFPSL---------FR 802 (898)
Q Consensus 735 KDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~L-P~GP--lLLSPd~Lf~AL---------rR 802 (898)
.|.+++++++....++++|.+++-+||-...-|...-.= .++ .++. +.+....|-... +.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~--------~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~ 616 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKE--------CGIEAEAESALVIDGAELDALSDEELAELVEEL 616 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH--------cCCCCCCCceeEeehHHhhhcCHHHHHHHhhhC
Confidence 588899999999999999999999999755433333211 111 1121 122222211100 11
Q ss_pred hhcccCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCCC-----------CEEEECCC-Cceeeec
Q 002634 803 EVIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPKG-----------KIFIINPK-GEVAISH 868 (898)
Q Consensus 803 Evi~Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~~-----------RIFiInpk-Gel~~~~ 868 (898)
.+.-|---.-|....+.+++. .-+.|.-||..||+-|.+++ ||-.. .|+.++.. +-++.--
T Consensus 617 ~VfARvsP~qK~~IV~~lq~~-----g~vVamtGDGvNDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av 691 (917)
T COG0474 617 SVFARVSPEQKARIVEALQKS-----GHVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAV 691 (917)
T ss_pred cEEEEcCHHHHHHHHHHHHhC-----CCEEEEeCCCchhHHHHHhcCccEEecccHHHHHHhhcceEeecCcHHHHHHHH
Confidence 133343444699999999872 34677789999999999995 77444 34555553 2222111
Q ss_pred ccccchhhhHHhhhhhcC
Q 002634 869 RIDVKSYTSLHTLVNDMF 886 (898)
Q Consensus 869 ~~~~~SY~~L~~~Vd~~F 886 (898)
..+...|.++...+-.+|
T Consensus 692 ~eGR~~~~ni~k~i~~~l 709 (917)
T COG0474 692 VEGRRVYVNIKKFILYLL 709 (917)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 122336666666555544
No 256
>PRK15000 peroxidase; Provisional
Probab=23.17 E-value=7.1e+02 Score=25.95 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
+..++++.+++++|..||-+|.-..- .-+.|.+.
T Consensus 55 ~~l~~~~~~f~~~g~~vigvS~D~~~---~~~~w~~~ 88 (200)
T PRK15000 55 IAFDKRYEEFQKRGVEVVGVSFDSEF---VHNAWRNT 88 (200)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHH---HHHHHHhh
Confidence 46789999999999999999966432 22455543
No 257
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=22.92 E-value=2.9e+02 Score=35.30 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=65.1
Q ss_pred CCCCchHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHhhhCCCCCCCCceeeCCC-------CCCcchh-hhhcc
Q 002634 735 KDWTQSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGNALPNGPVVISPD-------GLFPSLF-REVIR 806 (898)
Q Consensus 735 KDWth~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v~Q~G~~LP~GPlLLSPd-------~Lf~ALr-REvi~ 806 (898)
.|..++++.+..+.+++.|.+++.+||-...-+..+- +- .++..+.++.-.+ .|-..+. -.+..
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA----~~----lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfA 619 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSELVAAKVC----HE----VGLDAGEVLIGSDIETLSDDELANLAERTTLFA 619 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH----HH----cCCCccCceeHHHHHhCCHHHHHHHHhhCcEEE
Confidence 5888999999999999999999999997654433322 21 2333222221110 0000000 02223
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCCcEEEEeCCchhhHHHHHhc--CCCCC
Q 002634 807 RAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKI--GIPKG 853 (898)
Q Consensus 807 Rkpe~FKie~L~dIr~LFP~~~nPFyAgFGNR~tDV~aYR~V--GIp~~ 853 (898)
|---+-|.+..+.+++ .+ -..|--||..||+-|.+++ ||..+
T Consensus 620 r~sPe~K~~IV~~Lq~---~G--~vVam~GDGvNDaPALk~ADVGIAmg 663 (902)
T PRK10517 620 RLTPMHKERIVTLLKR---EG--HVVGFMGDGINDAPALRAADIGISVD 663 (902)
T ss_pred EcCHHHHHHHHHHHHH---CC--CEEEEECCCcchHHHHHhCCEEEEeC
Confidence 3333458888888886 23 2456689999999999995 76553
No 258
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=22.86 E-value=2.2e+02 Score=25.67 Aligned_cols=64 Identities=23% Similarity=0.431 Sum_probs=43.9
Q ss_pred EEEEecCC-CcccccccCc--cCCCCCCCCC------chHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHHh
Q 002634 711 IVISDVDG-TITKSDVLGQ--FMPLVGKDWT------QSGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLNL 777 (898)
Q Consensus 711 VVISDIDG-TITkSD~lGh--ilP~lGKDWt------h~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~v 777 (898)
...-|+|| +++.++..|. ++-+....|. .+.+.+++.+++++|++|+-+|.-+.. .++.|+...
T Consensus 8 f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~---~~~~~~~~~ 80 (124)
T PF00578_consen 8 FTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE---EIKQFLEEY 80 (124)
T ss_dssp EEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH---HHHHHHHHH
T ss_pred cEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc---chhhhhhhh
Confidence 44557774 5556665542 2223455575 357789999999999999999986555 778888875
No 259
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=21.60 E-value=1.1e+02 Score=35.30 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=47.4
Q ss_pred CCCeEEEEecCCCcccccccCccCCCCCCCCCchHHHHHHHHHHHC----CCeEEEEccChhhHHHHHHHHHHHhhhCCC
Q 002634 707 WNAKIVISDVDGTITKSDVLGQFMPLVGKDWTQSGVAKLFSAIKEN----GYQLLFLSARAIVQAYLTRSFLLNLKQDGN 782 (898)
Q Consensus 707 ~~~KVVISDIDGTITkSD~lGhilP~lGKDWth~GVAkLy~~I~~N----GYkILYLSARpigqAd~TR~wL~~v~Q~G~ 782 (898)
..+-++.|||||.|.+. |. +-+|+-+.++.|.+| -.++|+||.-.-.....-.+.|.. +-|.
T Consensus 33 ~~~fgfafDIDGVL~RG----~~--------~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~--~Lgv 98 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFRG----HR--------PIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSA--LLGV 98 (389)
T ss_pred CCceeEEEecccEEEec----CC--------CCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHH--hhCC
Confidence 34567999999999873 21 235788899999888 578999986544333333344443 3456
Q ss_pred CCCCCceeeCC
Q 002634 783 ALPNGPVVISP 793 (898)
Q Consensus 783 ~LP~GPlLLSP 793 (898)
.++.--|+.+-
T Consensus 99 ~Vs~dqviqSH 109 (389)
T KOG1618|consen 99 EVSADQVIQSH 109 (389)
T ss_pred ccCHHHHHhhc
Confidence 66665555543
No 260
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=20.06 E-value=3.8e+02 Score=27.84 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHCCCeEEEEccChhhHHHHHHHHHHH
Q 002634 740 SGVAKLFSAIKENGYQLLFLSARAIVQAYLTRSFLLN 776 (898)
Q Consensus 740 ~GVAkLy~~I~~NGYkILYLSARpigqAd~TR~wL~~ 776 (898)
+..++++.++.+.|..||-+|.-+. ..-+.|...
T Consensus 52 ~~l~~~~~~f~~~g~~vigIS~D~~---~~~~a~~~~ 85 (187)
T PRK10382 52 GDVADHYEELQKLGVDVYSVSTDTH---FTHKAWHSS 85 (187)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCH---HHHHHHHHh
Confidence 4677899999999999999985433 345666654
No 261
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=20.00 E-value=90 Score=36.49 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhh-hCCCCCCCCceeeCCCCCCc
Q 002634 767 AYLTRSFLLNLK-QDGNALPNGPVVISPDGLFP 798 (898)
Q Consensus 767 Ad~TR~wL~~v~-Q~G~~LP~GPlLLSPd~Lf~ 798 (898)
+.-+..||+.+- +-....|..||++.-|+-|.
T Consensus 197 a~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~ 229 (448)
T PF13701_consen 197 AKGAAEFLKRVLRRLRQRWPDTRILVRGDSGFA 229 (448)
T ss_pred HHHHHHHHHHHHHHHhhhCccceEEEEecCccC
Confidence 444556666543 22346899999999998664
Done!