Query 002636
Match_columns 898
No_of_seqs 208 out of 1132
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 7E-177 2E-181 1605.4 91.3 886 11-898 3-900 (900)
2 KOG1041 Translation initiation 100.0 1E-137 3E-142 1248.0 72.9 797 37-898 42-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 3E-131 6E-136 1079.0 48.9 706 45-860 87-832 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 2.3E-95 5E-100 831.3 39.7 398 435-858 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 4.3E-90 9.3E-95 795.8 44.1 424 404-856 3-448 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 9.3E-82 2E-86 713.4 37.4 371 448-856 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 2.9E-67 6.3E-72 578.1 24.7 284 560-859 1-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 9.3E-44 2E-48 405.6 26.2 280 545-856 98-402 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 3.6E-22 7.8E-27 192.8 11.5 130 275-414 1-135 (135)
10 cd02825 PAZ PAZ domain, named 99.8 2.2E-18 4.7E-23 161.1 10.3 106 274-390 1-115 (115)
11 cd02846 PAZ_argonaute_like PAZ 99.8 3.6E-18 7.7E-23 159.9 11.8 107 275-390 2-114 (114)
12 cd02845 PAZ_piwi_like PAZ doma 99.8 1.6E-18 3.4E-23 161.4 8.0 107 275-392 2-116 (117)
13 cd02844 PAZ_CAF_like PAZ domai 99.4 1.7E-13 3.6E-18 130.4 6.7 84 298-391 27-133 (135)
14 PF08699 DUF1785: Domain of un 99.4 1E-13 2.2E-18 108.9 3.8 51 223-274 2-52 (52)
15 COG1431 Argonaute homolog, imp 99.2 2.1E-09 4.6E-14 119.8 22.0 250 569-859 416-671 (685)
16 cd02843 PAZ_dicer_like PAZ dom 98.7 3.1E-08 6.7E-13 91.0 5.9 64 300-375 39-106 (122)
17 PF13032 DUF3893: Domain of un 92.0 0.34 7.4E-06 46.7 6.0 55 800-858 66-120 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 88.2 2.4 5.2E-05 41.7 8.4 106 634-761 10-120 (155)
19 TIGR00194 uvrC excinuclease AB 78.4 9.4 0.0002 45.9 9.5 109 636-766 382-498 (574)
20 PRK14672 uvrC excinuclease ABC 72.4 18 0.00039 43.9 9.7 108 634-764 453-564 (691)
21 PRK12306 uvrC excinuclease ABC 68.3 26 0.00057 41.5 9.8 105 635-764 366-475 (519)
22 PRK14667 uvrC excinuclease ABC 63.8 34 0.00074 41.1 9.7 105 635-764 361-470 (567)
23 PRK14671 uvrC excinuclease ABC 62.4 36 0.00079 41.4 9.8 107 634-765 414-525 (621)
24 PRK14670 uvrC excinuclease ABC 58.6 54 0.0012 39.5 10.2 110 634-764 357-471 (574)
25 PRK14669 uvrC excinuclease ABC 55.8 53 0.0012 39.9 9.6 107 634-764 395-506 (624)
26 PRK00558 uvrC excinuclease ABC 55.0 49 0.0011 40.2 9.1 99 634-756 382-485 (598)
27 PF00763 THF_DHG_CYH: Tetrahyd 53.3 33 0.00072 32.0 5.9 69 543-612 16-85 (117)
28 PRK14666 uvrC excinuclease ABC 47.6 88 0.0019 38.3 9.5 99 634-756 471-571 (694)
29 PRK14185 bifunctional 5,10-met 47.1 56 0.0012 35.8 7.2 69 543-611 17-86 (293)
30 KOG4327 mRNA splicing protein 46.8 12 0.00026 37.6 1.8 21 8-29 165-185 (218)
31 PRK14171 bifunctional 5,10-met 46.2 75 0.0016 34.7 8.0 67 545-611 20-87 (288)
32 cd06559 Endonuclease_V Endonuc 44.7 1.2E+02 0.0025 31.6 8.8 42 801-852 166-207 (208)
33 PF02757 YLP: YLP motif; Inte 44.5 11 0.00024 18.8 0.6 7 9-15 2-8 (9)
34 PRK14187 bifunctional 5,10-met 43.8 87 0.0019 34.3 8.0 68 545-612 20-88 (294)
35 PRK14176 bifunctional 5,10-met 43.2 98 0.0021 33.8 8.3 66 546-611 27-93 (287)
36 PRK14668 uvrC excinuclease ABC 43.0 90 0.0019 37.7 8.7 98 635-758 375-479 (577)
37 PRK14184 bifunctional 5,10-met 42.9 86 0.0019 34.2 7.8 69 543-611 17-86 (286)
38 PRK14183 bifunctional 5,10-met 42.1 83 0.0018 34.2 7.5 55 557-611 31-86 (281)
39 PLN02616 tetrahydrofolate dehy 40.3 98 0.0021 34.8 7.9 66 546-611 92-158 (364)
40 PLN02897 tetrahydrofolate dehy 40.3 89 0.0019 34.9 7.5 65 547-611 76-141 (345)
41 PRK14186 bifunctional 5,10-met 39.8 96 0.0021 34.0 7.6 68 545-612 20-88 (297)
42 PLN02516 methylenetetrahydrofo 39.6 1.1E+02 0.0024 33.6 8.0 66 547-612 29-95 (299)
43 PRK10792 bifunctional 5,10-met 38.8 94 0.002 33.9 7.3 70 543-612 19-89 (285)
44 PRK14188 bifunctional 5,10-met 38.7 1.1E+02 0.0024 33.6 7.9 69 544-612 19-88 (296)
45 PRK14192 bifunctional 5,10-met 38.7 94 0.002 33.9 7.4 76 545-620 21-99 (283)
46 PRK14177 bifunctional 5,10-met 38.7 1.1E+02 0.0024 33.4 7.7 72 545-616 21-95 (284)
47 PRK14168 bifunctional 5,10-met 37.9 1E+02 0.0022 33.9 7.4 69 543-611 19-88 (297)
48 PRK14174 bifunctional 5,10-met 37.8 1.1E+02 0.0023 33.7 7.6 67 546-612 20-87 (295)
49 PRK14180 bifunctional 5,10-met 37.7 1.1E+02 0.0023 33.5 7.5 67 545-611 19-86 (282)
50 PRK14169 bifunctional 5,10-met 36.8 1.1E+02 0.0025 33.2 7.6 68 543-611 17-85 (282)
51 PRK14179 bifunctional 5,10-met 36.0 1.3E+02 0.0027 32.9 7.8 68 545-612 20-88 (284)
52 PRK14166 bifunctional 5,10-met 36.0 1.1E+02 0.0024 33.3 7.3 65 546-611 20-85 (282)
53 PRK14191 bifunctional 5,10-met 34.9 1.3E+02 0.0028 32.8 7.6 68 545-612 19-87 (285)
54 PRK14193 bifunctional 5,10-met 34.6 1.2E+02 0.0027 33.0 7.4 56 557-612 32-88 (284)
55 PRK14194 bifunctional 5,10-met 34.5 1.3E+02 0.0027 33.2 7.5 55 557-611 33-88 (301)
56 PRK14190 bifunctional 5,10-met 32.9 1.3E+02 0.0029 32.7 7.3 67 545-612 21-88 (284)
57 PRK14172 bifunctional 5,10-met 32.7 1.4E+02 0.0031 32.4 7.5 70 543-612 18-88 (278)
58 PF02772 S-AdoMet_synt_M: S-ad 32.0 36 0.00078 32.0 2.4 30 829-858 12-41 (120)
59 PRK00766 hypothetical protein; 31.1 88 0.0019 32.1 5.3 37 813-856 152-188 (194)
60 PRK14173 bifunctional 5,10-met 29.3 1.7E+02 0.0037 32.0 7.4 57 556-612 28-85 (287)
61 PRK14170 bifunctional 5,10-met 28.8 1.7E+02 0.0036 32.0 7.2 55 557-611 31-86 (284)
62 PRK14181 bifunctional 5,10-met 27.8 1.8E+02 0.004 31.7 7.3 56 556-611 25-81 (287)
63 PRK14167 bifunctional 5,10-met 27.8 1.8E+02 0.004 31.9 7.3 56 557-612 31-87 (297)
64 PRK14189 bifunctional 5,10-met 27.8 2.1E+02 0.0045 31.3 7.7 66 545-611 21-87 (285)
65 COG0322 UvrC Nuclease subunit 27.7 2.6E+02 0.0057 33.7 9.2 106 635-764 379-486 (581)
66 PRK14182 bifunctional 5,10-met 27.1 1.8E+02 0.004 31.6 7.1 55 557-611 30-85 (282)
67 PRK14178 bifunctional 5,10-met 26.8 2.3E+02 0.0049 30.9 7.8 57 556-612 25-82 (279)
68 COG0190 FolD 5,10-methylene-te 25.5 2E+02 0.0043 31.3 6.9 67 545-611 18-85 (283)
69 PRK14175 bifunctional 5,10-met 25.3 2E+02 0.0044 31.4 7.1 55 557-611 32-87 (286)
70 COG0192 MetK S-adenosylmethion 21.7 65 0.0014 35.6 2.4 33 827-859 125-157 (388)
71 KOG3123 Diphthine synthase [Tr 21.4 1.2E+02 0.0026 31.2 4.0 46 558-606 132-177 (272)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=7.2e-177 Score=1605.35 Aligned_cols=886 Identities=75% Similarity=1.229 Sum_probs=771.5
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCc-cCcCCCCCCCCCCeEEEEeeEEEEEeecCCceEEEEEEEeecCCCCCCCCc
Q 002636 11 YLPPPPPIIPPNVVPLQSGKVAAPAPKR-LPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGK 89 (898)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~YdV~i~~~~~~~v~~k 89 (898)
-+||++|..|++|++..++....+.... .+++||||||.|++|.|+||||+|.+..++..+|||||+|+|+.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~ 82 (900)
T PLN03202 3 ALPPPPPVVPPNVVPIKLEPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGK 82 (900)
T ss_pred CCCCCCCCCCcccccccccccccccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccch
Confidence 4789999999999999888777655555 889999999999999999999999976567789999999987655667677
Q ss_pred hhHHHHHHHHHHHhhhhccCcceEEeCCcceeecccccCcceEEEEEEcccccccccCCCCCCCCCCCCCCccccccCCC
Q 002636 90 GIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPS 169 (898)
Q Consensus 90 ~~~r~i~~~~~~~~~~~~~~~~~vyDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 169 (898)
+++++|+.++++++..++.+..++|||+++|||+.+||.+..++.|.+++++..++..+++|++++++++++.+|.....
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (900)
T PLN03202 83 GIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPY 162 (900)
T ss_pred hhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccC
Confidence 88999999998876555666689999999999999999877788888765322221112344455566555544433445
Q ss_pred CCceEEEEEEEeeccChHHHHHHHcCCCchhhHHHHHHHHHHHhccccccCceeccccccCCCCCCcccCCCcEEeeecc
Q 002636 170 RSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGF 249 (898)
Q Consensus 170 ~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~gle~~~Gf 249 (898)
+.+.|+|+|++++++++++|.+||.|.......++||+||+|||+.++..++..+||+||.+......++++|+|+|+||
T Consensus 163 ~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~ 242 (900)
T PLN03202 163 QSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGF 242 (900)
T ss_pred CCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeee
Confidence 68899999999999999999999999877778899999999999998877788889999987655556899999999999
Q ss_pred eEEEEecCCeeeEEeecceeeeeccchHHHHHHhhcCCCCCccccHHHHHhhhcCcEEEeecCCceEEEeecCCCCCCcc
Q 002636 250 HSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQ 329 (898)
Q Consensus 250 ~~Svr~~~~gl~LniDv~~~~F~~~~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~y~~r~~~I~~i~~~~a~~~ 329 (898)
++|||+++++++||+|+++++|+++++|+|+|.++.+.++....++.++.++|+|++|.++|++++|+|.||++.++++.
T Consensus 243 ~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~ 322 (900)
T PLN03202 243 HSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQ 322 (900)
T ss_pred eeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcce
Confidence 99999999999999999999999999999999987655444344677899999999999999999999999999999999
Q ss_pred eeecccCCCCCC-CCCCeeeeHHHHHHHhcCCcccCCC-CCceEecCCCCCcccccccceEEccCccccccCCHHHHHHH
Q 002636 330 TFSLKQKSGHNG-DSDAIEITVYEYFVNNRHIKLEYSA-DFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASL 407 (898)
Q Consensus 330 ~F~~~~~~~~~g-~~~~~~iSv~~Yf~~~Y~i~L~~~p-~lPlv~vg~~~~~~ylP~Elc~i~~~Q~~~~~l~~~q~~~m 407 (898)
+|..++.++ +| +..+++|||+|||+++|||+|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+++|
T Consensus 323 ~F~~~~~~~-~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~m 400 (900)
T PLN03202 323 TFSLKQRNG-NGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSL 400 (900)
T ss_pred EEEcccCCc-ccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHH
Confidence 998764321 11 12246899999999999999999 7 99999999988899999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHHHHHhccCCchhhhhccCceecCceeEeeeEEcCCCceeecCCcccCCCCCccCcCCceeeccc
Q 002636 408 VEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPM 487 (898)
Q Consensus 408 ik~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~i~~~~~~v~arvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~ 487 (898)
|++++.+|.+|.+.|.++++.++++.+++|++|||+|+.+|++|+||||+||+|.||+++.+.|.+|+||+++.+|++|+
T Consensus 401 ik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~ 480 (900)
T PLN03202 401 VEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPT 480 (900)
T ss_pred HHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecCCC
Confidence 99999999999999999999998888899999999999999999999999999999987766788999999999999999
Q ss_pred ccceEEEEEeCCchhHHHHHHHHHHHHhhcCcccCCCcceeecchhhhcCchhHHHHHHHHHHHHhCCCCCeEEEEEecC
Q 002636 488 QIKWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPE 567 (898)
Q Consensus 488 ~l~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lvlvIlp~ 567 (898)
.+++|+|+++.++.++++|++.|.+.|+.+||.+..|..+....++........+++.+++.+++.++..++|+|||||+
T Consensus 481 ~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~ 560 (900)
T PLN03202 481 KIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPE 560 (900)
T ss_pred ccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcC
Confidence 99999999887666899999999999999999999886543332222222334678999999998776678999999997
Q ss_pred CCCCcchHHHHHHhhhccCceeeeeeccccchhhHHHHHHHHHhccCCccccccccccCCCCCccCCcEEEEEEEeecCC
Q 002636 568 RKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGS 647 (898)
Q Consensus 568 ~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~~q~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H~~ 647 (898)
+++.++|+.||++||++.||+||||..++.++||+.|||||||+||||+||.|+.+.+..+|++.+.+|||||+||+||+
T Consensus 561 ~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~ 640 (900)
T PLN03202 561 RKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGS 640 (900)
T ss_pred CCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCC
Confidence 44688999999999999999999998777789999999999999999999999765445678877789999999999999
Q ss_pred CCCCCCCeEEEEEeecCCCCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhCCCCCceEEEeecCc
Q 002636 648 PGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNT 727 (898)
Q Consensus 648 ~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~IIiyRDGV 727 (898)
+++...|||||+|||+|++.+++|++.+++|.+++|+|++|+.+...+.+++|++++|+.|++++++.+|++||||||||
T Consensus 641 ~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGV 720 (900)
T PLN03202 641 PGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGV 720 (900)
T ss_pred CCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCC
Confidence 87655799999999999757899999999999999999998654444456789999999999887789999999999999
Q ss_pred cccchhh---------HHHhhcccCCCCceEEEEEeeecccceeecCCCCCCCCCeeeeecccccCCcccEEeecccCCc
Q 002636 728 LSCTFLQ---------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMI 798 (898)
Q Consensus 728 segq~~~---------~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~q 798 (898)
|||||.+ ++||++++++|+|+||||||+||||+|||+.+..+||+||||||++||+|.+||||||||.++|
T Consensus 721 seGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~q 800 (900)
T PLN03202 721 SESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMI 800 (900)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCcceEEEecccccc
Confidence 9999988 7799999888999999999999999999998777999999999999999999999999999999
Q ss_pred ccccCceEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCC
Q 002636 799 GTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMTSAGS 878 (898)
Q Consensus 799 GTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l~~~~~~~~~s~~~~~~~~~~ 878 (898)
||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||++++..+++++++++++++.
T Consensus 801 GTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~~~~~ 880 (900)
T PLN03202 801 GTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITSAGA 880 (900)
T ss_pred cCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999987654444444444444444
Q ss_pred CCCCCCccccccCCCCceeC
Q 002636 879 IPVPELPVLHERVCNSMFFC 898 (898)
Q Consensus 879 ~~~~~~~~~h~~~~~~M~~~ 898 (898)
.+...+.+||++++++||||
T Consensus 881 ~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 881 VPVPELPRLHENVASSMFFC 900 (900)
T ss_pred cccccccccchhhcCCeeeC
Confidence 44556778999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-137 Score=1248.00 Aligned_cols=797 Identities=37% Similarity=0.584 Sum_probs=672.3
Q ss_pred CccCcCCCCCCCCCCeEEEEeeEEEEEeecCCce-EEEEEEEeecCCCCCCCCchhHH-HHHHHHHHHhh-hhccCcceE
Q 002636 37 KRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGY-FCHYSVALFYEDGHPVDGKGIGR-KILDKVQETYS-HELEGKHFA 113 (898)
Q Consensus 37 ~~~~~~RP~~Gt~G~~i~l~tN~f~i~~~~~~~~-~y~YdV~i~~~~~~~v~~k~~~r-~i~~~~~~~~~-~~~~~~~~v 113 (898)
...++.|||.|+.|+.+.|.+|||.++++.++.. +++|+|++.+ +..++..++ .+++.+..... ..+.+...+
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFN----EHGRRKVQCLRFFLDKVKNPELFELKSGGPA 117 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecC----CCCchHHHHHHHHHHHHhccccccccCCccc
Confidence 3578889999999999999999999988766666 8999999964 444455553 56655554432 234556677
Q ss_pred EeCCcceeecccccC--cceEEEEEEcccccccccCCCCCCCCCCCCCCccccccCCCCCceEEEEEEEeeccChHHHHH
Q 002636 114 YDGEKSLFTLGSFQR--KKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIAN 191 (898)
Q Consensus 114 yDG~~~lys~~~L~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~ 191 (898)
|||+++|||..+|+. ....|.+..++. ...|++.|+++.++.+..+..
T Consensus 118 YDg~~~lyt~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ik~~~~~~~~~~~~ 167 (876)
T KOG1041|consen 118 YDGQKTLYTKLELPEGVVTLDFDVISPKE------------------------------WKKFKVSIKKVSEVVLTKLNG 167 (876)
T ss_pred ccCCceeEeccccccccceEEEEecCCCC------------------------------CcceEEEEEecccccccCccc
Confidence 999999999777774 223343332211 112999999999999988888
Q ss_pred HHcCCCchhhHHHHHHHHHHHhccccccCceeccccccCCCCCCcccCCCcEEeeecceEEEEecCCeeeEEeecceeee
Q 002636 192 ALRGQETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMI 271 (898)
Q Consensus 192 ~l~g~~~~~~~~~iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~gl~LniDv~~~~F 271 (898)
++.+.......++++++++++++.+...++...+.+||.........+++|.|+|.||++|+|+++++++||+|+++++|
T Consensus 168 ~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F 247 (876)
T KOG1041|consen 168 FIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAF 247 (876)
T ss_pred cccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeee
Confidence 88877667788999999999999998878888999999873333335889999999999999999999999999999999
Q ss_pred eccchHHHHHHhhcCCCC-CccccH-HHHHhhhcCcEEEeecC--CceEEEeecCCCCCCcceeecccCCCCCCCCCCee
Q 002636 272 VKPGPVVNFLLANQNVRE-PHQIDW-NKAKRVLKNLRINTNHS--NTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIE 347 (898)
Q Consensus 272 ~~~~~l~d~l~~~~~~~~-~~~~~~-~~i~~~Lkgl~V~~~y~--~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~ 347 (898)
+++.+|++++.+....+. ....++ ..+++.|+||+|.++|+ +|.|+|.+++..+|.+.+|++++.+ +++
T Consensus 248 ~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~-------~~~ 320 (876)
T KOG1041|consen 248 YKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK-------GRE 320 (876)
T ss_pred ecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC-------ceE
Confidence 999999999988765442 111122 23899999999999994 4889999999999999999976532 479
Q ss_pred eeHHHHHHHhcCCcccCCCCCceEecCCCCCcccccccceEEccCccccc-cCCHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 002636 348 ITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTK-ALSNQQRASLVEKSRQKPQERMGVLTEAM 426 (898)
Q Consensus 348 iSv~~Yf~~~Y~i~L~~~p~lPlv~vg~~~~~~ylP~Elc~i~~~Q~~~~-~l~~~q~~~mik~~~~~P~~R~~~i~~~~ 426 (898)
+||+|||+++||++|+| |+||||++|..++..|+|||||.|++||++.+ +|++.|+++|++.++..|++|.+.|++++
T Consensus 321 ~tV~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~~~ 399 (876)
T KOG1041|consen 321 ITVADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKKVL 399 (876)
T ss_pred EeHHHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HhccCCchhhhhccCceecCceeEeeeEEcCCCceeecCC-cccCCCCCccCcCCceeecccccceEEEEEeCCchh--H
Q 002636 427 RRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNG-EDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSARCD--I 503 (898)
Q Consensus 427 ~~l~~~~~~~l~~~Gi~i~~~~~~v~arvL~~P~i~~g~~-~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~~~--~ 503 (898)
+..++..+++|++|||.|.++|+.|+||+|+||.|.|+++ ....+.+|.|++++++|++|+.+..|+|++|....+ .
T Consensus 400 ~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~ 479 (876)
T KOG1041|consen 400 KSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQ 479 (876)
T ss_pred HHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccccH
Confidence 9988877999999999999999999999999999999987 345678899999999999999999999999987653 2
Q ss_pred HHHHHHHHHHHhhcCcccCCCcceeecchhhhcCchhHHHHHHHHHHHHhC--CCCCeEEEEEecCCCCCcchHHHHHHh
Q 002636 504 RSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKL--PGPPQLLLCILPERKNSDIYGPWKRKN 581 (898)
Q Consensus 504 ~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~lvlvIlp~~~~~~~Y~~iK~~~ 581 (898)
+.|++.|.+.|+..||.|..|. .. . ....+++..+..++... ...+++++||+++ +..++|..+|+++
T Consensus 480 ~~f~~~L~~~c~~~Gm~i~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~~e 549 (876)
T KOG1041|consen 480 KQFVDELIKICKDKGMEIKRPR-KW-A-------PTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKYIE 549 (876)
T ss_pred HHHHHHHHHHHHHcCccccccc-cc-C-------cccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHHHH
Confidence 6899999999999999996532 11 1 11245666666665544 2468999999998 7889999999999
Q ss_pred hhccCceeeeeecc---ccchhhHHHHHHHHHhccCCccccccccccCCCCCccCCcEEEEEEEeecCCCCCCC--CCeE
Q 002636 582 LSEAGIVTQCIAPT---KVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSD--LPSI 656 (898)
Q Consensus 582 ~~~~gI~TQci~~~---~~~~q~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H~~~~~~~--~pSi 656 (898)
+...||+|||+..+ +..+||++||++|||+||||+|+.+........| ....+|||||+||+||+++... .|||
T Consensus 550 ~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~PSi 628 (876)
T KOG1041|consen 550 ETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNPSI 628 (876)
T ss_pred HHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCccE
Confidence 99999999999975 3468999999999999999999988764332333 3468999999999999988655 5999
Q ss_pred EEEEeecCCCCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhCCCCCceEEEeecCccccchhh--
Q 002636 657 AAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ-- 734 (898)
Q Consensus 657 aavVaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~IIiyRDGVsegq~~~-- 734 (898)
||||+|+|| ..++|.+.+++|.+++|+|+++ ++|+.++|..|++. ++.+|++|||||||||||||.+
T Consensus 629 agvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~---------~~~~~~~l~~f~~~-t~~~P~~IIiyRdGvSEgqf~~vl 697 (876)
T KOG1041|consen 629 VGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL---------GEMIRELLRSFRKS-TRKLPDRIVIYRDGVSEGQFSMVL 697 (876)
T ss_pred EEEEecccc-cchhhcceEEEecCChhhhcch---------HHHHHHHHHHHHHh-ccCCCceEEEEecCCccchHHHHH
Confidence 999999998 7899999999999999999983 36999999999876 4579999999999999999887
Q ss_pred -------HHHhhcccCCCCceEEEEEeeecccceeecCCCC-------CCCCCeeeeecccccCCcccEEeecccCCccc
Q 002636 735 -------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRP-------ENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGT 800 (898)
Q Consensus 735 -------~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~-------~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGT 800 (898)
++||..+.++|.|+||||||+||||||||+.+.. .|++|||+||+.||||.++|||||||.++|||
T Consensus 698 ~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGT 777 (876)
T KOG1041|consen 698 EEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGT 777 (876)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCccccc
Confidence 8899999999999999999999999999997654 59999999999999999999999999999999
Q ss_pred ccCceEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhhhcccccCCCCCCCCCCCC--CCCC
Q 002636 801 SRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDEMSDTSSSHNAMT--SAGS 878 (898)
Q Consensus 801 arPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l~~~~~~~~~s~~~~~~--~~~~ 878 (898)
+||+||+||+||++|++|+||+|||.|||+|++|++|||||+|+||||++|+|||.+.+- ...+++...++.+ ...+
T Consensus 778 srp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~~~~~-~~~~~~~~~~~~s~~~~~~ 856 (876)
T KOG1041|consen 778 SKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRNNYKE-HLREKNSSAIYQSIVDLDA 856 (876)
T ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhhhhhh-hccccCCCcccccccccch
Confidence 999999999999999999999999999999999999999999999999999999998311 0111111111111 1111
Q ss_pred CCCCCCccccccCCCCceeC
Q 002636 879 IPVPELPVLHERVCNSMFFC 898 (898)
Q Consensus 879 ~~~~~~~~~h~~~~~~M~~~ 898 (898)
.......++|.++.++||||
T Consensus 857 ~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 857 LNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred hhhhhHHHhhhcccceEEeC
Confidence 12456678999999999998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.6e-131 Score=1079.04 Aligned_cols=706 Identities=25% Similarity=0.421 Sum_probs=616.1
Q ss_pred CCCCCCCeEEEEeeEEEEEeecCCceEEEEEEEeecCCCCCCCCchhHHHHHHHHHHHhhhhccCcceEEeCCcceeecc
Q 002636 45 NHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLG 124 (898)
Q Consensus 45 ~~Gt~G~~i~l~tN~f~i~~~~~~~~~y~YdV~i~~~~~~~v~~k~~~r~i~~~~~~~~~~~~~~~~~vyDG~~~lys~~ 124 (898)
..|++|.+|+|.||||++.. .|++.+|||+|+| .|.+++++++++++..+. ++.|+.++|||. +||.++
T Consensus 87 KtGssG~pv~l~tN~f~l~t-~p~w~iyqYhVef----~P~ves~rlR~~~L~~h~-----~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMT-RPDWSIYQYHVEF----EPDVESRRLREALLYNHT-----DLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeecc-CCCcEEEEEEEee----ccccccHHHHHHHHHHhH-----hhhccceeecce-eehhhH
Confidence 47999999999999999875 4899999999999 567888889888887654 445789999998 999999
Q ss_pred cccCcceEEEEEEcccccccccCCCCCCCCCCCCCCccccccCCCCCceEEEEEEEeeccChHHHHHHHcCCCchhhHHH
Q 002636 125 SFQRKKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEA 204 (898)
Q Consensus 125 ~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~ 204 (898)
++..+-.+.. +. +.++..++|+|++++++.. .+++.
T Consensus 156 k~eq~~tel~-------~k------------------------s~~ge~i~I~ik~~~~~~~-------------t~p~~ 191 (845)
T KOG1042|consen 156 KFEQKQTELV-------SK------------------------SRDGELIKITIKLTNELPS-------------TDPQC 191 (845)
T ss_pred HHhhhhheee-------cc------------------------cCCCceEEEEEEEeccccC-------------CChhH
Confidence 9987643321 10 2356789999999999887 35689
Q ss_pred HHHHHHHHhccccccCceeccccccCCCCCCcccCCCcEEeeecceEEEEecCCeeeEEeecceeeeeccchHHHHHHhh
Q 002636 205 MRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLAN 284 (898)
Q Consensus 205 iq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~gl~LniDv~~~~F~~~~~l~d~l~~~ 284 (898)
||++|+|+|..+..+++.++||+||++......+ ...+++|+||.+|||..|..++|+.|++|++ .+..|++|+|..+
T Consensus 192 iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ip-~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~ 269 (845)
T KOG1042|consen 192 IQVFNLILRRSMKGLNLTQIGRNYYDPRAKIEIP-EFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSC 269 (845)
T ss_pred HHHHHHHHHHHHhhccHHHhhhccCCCCcccccc-cccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHH
Confidence 9999999999998888999999999987543222 4689999999999999999999999999998 7889999999886
Q ss_pred cCCCCCccccHHHHHhhhcCcEEEeecCCceEEEeecCCCCCCcceeecccCCCCCCCCCCeeeeHHHHHHHhcCCcccC
Q 002636 285 QNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEY 364 (898)
Q Consensus 285 ~~~~~~~~~~~~~i~~~Lkgl~V~~~y~~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~iSv~~Yf~~~Y~i~L~~ 364 (898)
... +.. ..+++++.+.|+.|.|.||||+|+|++|+|...+.++|..++ .+||+.|||+++|||+|++
T Consensus 270 ~~~--~~~-~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d----------geIs~veYyk~qYni~I~d 336 (845)
T KOG1042|consen 270 QHN--TQR-FQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD----------GEISFVEYYKKQYNIEITD 336 (845)
T ss_pred hhC--HHH-HHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC----------ceeeHhHHHHHhcCeEEee
Confidence 542 222 456899999999999999999999999999999999997653 3899999999999999999
Q ss_pred CCCCceEecCC--------CCCcccccccceEEccCccccccCCHHHHH------HHHHHhhCCHHHHHHHHHHHHHhcc
Q 002636 365 SADFPCINVGK--------PKRASYIPLELCTLVSLQRYTKALSNQQRA------SLVEKSRQKPQERMGVLTEAMRRNN 430 (898)
Q Consensus 365 ~p~lPlv~vg~--------~~~~~ylP~Elc~i~~~Q~~~~~l~~~q~~------~mik~~~~~P~~R~~~i~~~~~~l~ 430 (898)
-+||+|.... ..+.++++||||+++| |++++++ +|.++++..|++|.+.+..++..+.
T Consensus 337 -l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~ 408 (845)
T KOG1042|consen 337 -LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQ 408 (845)
T ss_pred -CCcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999997632 2245899999999997 7888776 6889999999999999999988875
Q ss_pred CC--chhhhhccCceecCceeEeeeEEcCCCceeecCCcc-cCCCCCccC--cCCceeecccccceEEEEEeCCch-hHH
Q 002636 431 YG--ADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGED-FFPRGGRWN--FNNKQLVEPMQIKWWAIVNFSARC-DIR 504 (898)
Q Consensus 431 ~~--~~~~l~~~Gi~i~~~~~~v~arvL~~P~i~~g~~~~-~~~~~g~W~--~~~~~f~~p~~l~~W~vv~~~~~~-~~~ 504 (898)
-+ ..+.|+.|||+++++.++|+||+|++.+|.+|+++. ..+...+|. ++..+++....+++|+|++..+.. .++
T Consensus 409 ~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~a~ 488 (845)
T KOG1042|consen 409 KNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSEAQ 488 (845)
T ss_pred cChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHHHHH
Confidence 43 357899999999999999999999999999998753 334558897 677788999999999999876554 799
Q ss_pred HHHHHHHHHHhhcCcccCCCcceeecchhhhcCchhHHHHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhc
Q 002636 505 SLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSE 584 (898)
Q Consensus 505 ~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~ 584 (898)
.|++.|.+.+..+||++..|..+.+.+ ++.+.|++.|......++++|+||+|+ .+.+.|+.||++++++
T Consensus 489 ~fi~~l~r~a~~mgm~i~~P~~v~i~d---------dr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~cvd 558 (845)
T KOG1042|consen 489 EFINMLRRVASSMGMQIREPICVEIKD---------DRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYLCVD 558 (845)
T ss_pred HHHHHHHHhccccceecCCceEEEeCC---------CChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhheecc
Confidence 999999999999999999998876542 345678888888877789999999998 7889999999999999
Q ss_pred cCceeeeeeccccch-h----hHHHHHHHHHhccCCccccccccccCCCCCccCCcEEEEEEEeecCCCCCCCCCeEEEE
Q 002636 585 AGIVTQCIAPTKVND-Q----YITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAV 659 (898)
Q Consensus 585 ~gI~TQci~~~~~~~-q----~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H~~~~~~~~pSiaav 659 (898)
.+||||||+.++++. + ...+|++||||||||..|.++ +|+ +.+||||+||+|.+.. ...|++|+
T Consensus 559 ~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~ 627 (845)
T KOG1042|consen 559 CPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAF 627 (845)
T ss_pred CCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEE
Confidence 999999999877643 2 468899999999999999985 565 7899999999998743 46899999
Q ss_pred EeecCCCCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhCCCCCceEEEeecCccccchhh-----
Q 002636 660 VSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ----- 734 (898)
Q Consensus 660 VaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~IIiyRDGVsegq~~~----- 734 (898)
|||+|. .+++|+|.+..|...+|+.+.|. -+|..+|++|++.| ..+|+||||||||||+||+.+
T Consensus 628 VAs~n~-~~tr~fS~v~~~~~~qel~d~L~---------~~~~~ALr~y~~~n-~~LPsRIi~YRDGVgDGQLk~l~n~E 696 (845)
T KOG1042|consen 628 VASMNN-DFTRWFSRVIEQENGQELADNLK---------VFLAKALRQYYEVN-RTLPSRIIVYRDGVGDGQLKTLVNYE 696 (845)
T ss_pred EEeecc-chhhhhhheecccCHHHHHHHHH---------HHHHHHHHHHHHhc-ccCCceEEEEecCCCCcccceeeeec
Confidence 999995 89999999999999999999876 49999999998875 699999999999999999987
Q ss_pred --------HHHhhcccCCCCceEEEEEeeecccceeecCCCC--CCCCCeeeeecccccCCcccEEeecccCCcccccCc
Q 002636 735 --------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRP--ENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPT 804 (898)
Q Consensus 735 --------~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~--~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPt 804 (898)
.+.+++++.+++|+++||||+||.++|||..... .||+||||||+.||.|.++||||+||++.|||+.||
T Consensus 697 V~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPT 776 (845)
T KOG1042|consen 697 VPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPT 776 (845)
T ss_pred cchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCc
Confidence 2334556677899999999999999999987643 799999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhhhccc
Q 002636 805 HYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKF 860 (898)
Q Consensus 805 ~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l~~ 860 (898)
||+||||++++++|.+|+|||.|||+|+||.++|++||||+||||||+.++..|+-
T Consensus 777 sYnvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 777 SYNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHR 832 (845)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999998864
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.3e-95 Score=831.30 Aligned_cols=398 Identities=47% Similarity=0.777 Sum_probs=355.9
Q ss_pred hhhhccCceecCceeEeeeEEcCCCceeecCC-cccCCCCCccCcCCceeecccccceEEEEEeCCc-------hhHHHH
Q 002636 435 QMLRSFGISIGTQFTQVEGRTLPAPKLKVGNG-EDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSAR-------CDIRSL 506 (898)
Q Consensus 435 ~~l~~~Gi~i~~~~~~v~arvL~~P~i~~g~~-~~~~~~~g~W~~~~~~f~~p~~l~~W~vv~~~~~-------~~~~~f 506 (898)
++|++|||+|+++|++|+||+|+||.|.|+++ ....+.+|+|++++++|++++.+++|+||++... +++++|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 4456789999999999999999999999998753 258999
Q ss_pred HHHHHHHHhhcCcccCCCcceeecchhhhcCchhHHHHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccC
Q 002636 507 CNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAG 586 (898)
Q Consensus 507 ~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~g 586 (898)
++.|.+.|+.+||.+. . ... ...+.++.+++.+++.....++|+|||+|+ ++.++|+.||++|+.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~-~-~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT-T-AIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc-c-ccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999986 1 111 112457778888887655578999999998 678999999999999999
Q ss_pred ceeeeeeccc----cchhhHHHHHHHHHhccCCccccccccccCCCCCccCCcEEEEEEEeecCCCCC-CCCCeEEEEEe
Q 002636 587 IVTQCIAPTK----VNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGR-SDLPSIAAVVS 661 (898)
Q Consensus 587 I~TQci~~~~----~~~q~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H~~~~~-~~~pSiaavVa 661 (898)
|+||||..++ .++|++.||+||||+||||+||.++... .+++...+|||||+||+||+++. ...|||||+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999754 4689999999999999999999997532 23445689999999999999874 45799999999
Q ss_pred ecCCCCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhCCCCCceEEEeecCccccchhh-------
Q 002636 662 SRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ------- 734 (898)
Q Consensus 662 S~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~IIiyRDGVsegq~~~------- 734 (898)
|+|. .+++|.+.+++|+.++|++++|. +|++++|+.|++. +|.+|++|||||||||||||.+
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l~---------~~~~~~l~~~~~~-~~~~P~~IiiyRDGvsegq~~~v~~~E~~ 294 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDLE---------SMVRELLRAFKKA-TGKLPERIIYYRDGVSEGQFAQVLNEELP 294 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHHH---------HHHHHHHHHHHHH-hCCCCceEEEEEcCcCHHHHHHHHHHHHH
Confidence 9996 89999999999999999998865 6999999999765 5789999999999999999987
Q ss_pred --HHHhhcccCCCCceEEEEEeeecccceeecCCC------CCCCCCeeeeecccccCCcccEEeecccCCcccccCceE
Q 002636 735 --IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGR------PENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHY 806 (898)
Q Consensus 735 --~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~------~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPt~Y 806 (898)
++||..+..+|+|+||||||+||||+|||+.+. .+||+||||||++||+|..+||||+||.++|||||||||
T Consensus 295 ~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y 374 (426)
T cd04657 295 AIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHY 374 (426)
T ss_pred HHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceE
Confidence 778888888899999999999999999998653 479999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhhhc
Q 002636 807 HVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFI 858 (898)
Q Consensus 807 ~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l 858 (898)
+||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|||+||
T Consensus 375 ~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 375 HVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999986
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.3e-90 Score=795.85 Aligned_cols=424 Identities=28% Similarity=0.446 Sum_probs=374.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhccCCch--hhhhccCceecCceeEeeeEEcCCCceeecCCcccCCCCCccCcC--
Q 002636 404 RASLVEKSRQKPQERMGVLTEAMRRNNYGAD--QMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFN-- 479 (898)
Q Consensus 404 ~~~mik~~~~~P~~R~~~i~~~~~~l~~~~~--~~l~~~Gi~i~~~~~~v~arvL~~P~i~~g~~~~~~~~~g~W~~~-- 479 (898)
.++|+++++.+|++|++.|.++++.+..+.+ ++|++|||+|++++++|+||+|+||.|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4689999999999999999999999877654 689999999999999999999999999999876555678999854
Q ss_pred CceeecccccceEEEEEeCCch-hHHHHHHHHHHHHhhcCcccCCCcceeecchhhhcCchhHHHHHHHHHHHHhCCCCC
Q 002636 480 NKQLVEPMQIKWWAIVNFSARC-DIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPP 558 (898)
Q Consensus 480 ~~~f~~p~~l~~W~vv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 558 (898)
+..|++++++++|+++++..+. .+++|++.|.+.++.+||.+.+|..+.... .+.+++++.+.+....++
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 5578999999999999886443 799999999999999999999887654322 124556677766655678
Q ss_pred eEEEEEecCCCCCcchHHHHHHhhhccCceeeeeecccc-----chhhHHHHHHHHHhccCCccccccccccCCCCCccC
Q 002636 559 QLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKV-----NDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSK 633 (898)
Q Consensus 559 ~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~-----~~q~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~ 633 (898)
+|+|||+|+ +..++|+.||++|+.+.||+||||..+++ ..+++.||++|||+||||+||.++.. ....
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCC
Confidence 999999998 66789999999999999999999997543 24688999999999999999998642 1234
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCCCCcceeeEEEEeccCCcee-eccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEM-IANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~e~-i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.+|||||+||+|++++ ..||+||+|||+|. .+++|++.++.|..++|+ +++| ++|++++|..|++.
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l---------~~~~~~~l~~y~~~- 293 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSL---------GKSMKKALKAYKKE- 293 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHH---------HHHHHHHHHHHHHH-
Confidence 7899999999999863 45999999999996 899999999999999997 6665 46999999999765
Q ss_pred CCCCCceEEEeecCccccchhh---------HHHhhcccCCCCceEEEEEeeecccceeecCCCC--CCCCCeeeeeccc
Q 002636 713 GKRKPENIIIFRLNTLSCTFLQ---------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRP--ENVPPGTVVDKGV 781 (898)
Q Consensus 713 ~~~~P~~IIiyRDGVsegq~~~---------~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~--~N~~pGTvVD~~i 781 (898)
+|.+|++|||||||||||||.+ ++||+.+...|+|+||||+|+||||+|||+.+.. +||+||||||++|
T Consensus 294 ~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~i 373 (448)
T cd04658 294 NKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEI 373 (448)
T ss_pred hCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccc
Confidence 5799999999999999999987 6688877788999999999999999999997654 5999999999999
Q ss_pred ccCCcccEEeecccCCcccccCceEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhh
Q 002636 782 CHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQ 856 (898)
Q Consensus 782 t~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~ 856 (898)
|+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+||+++||+|+|+||||++|+|++.
T Consensus 374 t~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~~a~~~g~ 448 (448)
T cd04658 374 TKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448 (448)
T ss_pred cCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=9.3e-82 Score=713.43 Aligned_cols=371 Identities=27% Similarity=0.402 Sum_probs=316.5
Q ss_pred eeEeeeEEcCCCceeecCCcccCCCCCccCcCCceeeccccc-ceEEEEEeCCchhHHHHHHHHHHHHhhcCcccCC-Cc
Q 002636 448 FTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQI-KWWAIVNFSARCDIRSLCNNLIRCGEMKGMHINN-PH 525 (898)
Q Consensus 448 ~~~v~arvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~~l-~~W~vv~~~~~~~~~~f~~~L~~~~~~~G~~i~~-p~ 525 (898)
+++|+||+|+||.|.|+++ |++++++|..|+.+ ++|+++++.++ ..++|++.|.+.++++||.+.+ |.
T Consensus 2 ~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~~-~~~~f~~~l~~~~~~~G~~~~~~~~ 71 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRNE-EVDDLVKRLADACRQLGMKIKEIPI 71 (393)
T ss_pred ceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEcccH-HHHHHHHHHHHHHHhCCCccCCCCC
Confidence 6799999999999999864 99999999999999 99999988643 4679999999999999999988 55
Q ss_pred ceeecchhhhcCchhHHHHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeeccc-----cchh
Q 002636 526 EVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTK-----VNDQ 600 (898)
Q Consensus 526 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~-----~~~q 600 (898)
.......+ ...+.+...|+++. +.+++|+|||+|+ ++.++|+.||++++.+ ||+||||..++ .+.+
T Consensus 72 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~ 142 (393)
T cd02826 72 VSWIEDLN----NSFKDLKSVFKNAI---KAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQ 142 (393)
T ss_pred cceeeccc----ccHHHHHHHHHHHh---hcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHH
Confidence 43322110 01233444444433 3468999999998 7789999999999988 99999999753 3468
Q ss_pred hHHHHHHHHHhccCCccccccccccCCCCCccCCcEEEEEEEeecCCCC-CCCCCeEEEEEeecCCCCcceeeEEEEecc
Q 002636 601 YITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPG-RSDLPSIAAVVSSRQWPSISRYRASVRTQS 679 (898)
Q Consensus 601 ~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H~~~~-~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~ 679 (898)
++.||++|||+||||+||.++... ....+|||||+||+|++++ ....+|++|+|||+|. . +.|.+..+.|.
T Consensus 143 ~~~Ni~lkin~KlGG~~~~l~~~~------~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~~~~~~~ 214 (393)
T cd02826 143 TLDNLLRKVNSKLGGINYILDSPV------KLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGGFLYVQP 214 (393)
T ss_pred HHHHHHHHHhhhhCCeeeEeccCC------CCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccceEEEEec
Confidence 999999999999999999996421 2347899999999999875 2347999999999995 3 44445577888
Q ss_pred CCceeeccccCCCCCCchHHHHHHHHHHHHHHhCCC-CCceEEEeecCccccchhh---------HHHhhcccCCCCceE
Q 002636 680 PKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKR-KPENIIIFRLNTLSCTFLQ---------IEASKFLDEKWSPKF 749 (898)
Q Consensus 680 ~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-~P~~IIiyRDGVsegq~~~---------~~a~~~l~~~~~Pki 749 (898)
.++|++++|. +|++++|..|+++ ++. +|++|||||||||||||+. ++||. +..+|+|+|
T Consensus 215 ~~~~~~~~l~---------~~~~~~L~~y~~~-~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~i 283 (393)
T cd02826 215 SREVKLQDLG---------EVIKKCLDGFKKS-TGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPKL 283 (393)
T ss_pred CccchHHHHH---------HHHHHHHHHHHHH-cCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCCE
Confidence 8888877654 6999999999765 567 9999999999999999987 55666 667899999
Q ss_pred EEEEeeecccceeecCCCC---CCCCCeeeeecccccCCcccEEeecccCCcccccCceEEEEecCCCCCHHHHHHHHHH
Q 002636 750 TVIVAQKNHHTKFFQSGRP---ENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHS 826 (898)
Q Consensus 750 t~Ivv~Krh~~Rff~~~~~---~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~ 826 (898)
|||+|+||||+|||+.+.. .||+||||||++||+|..+||||+||.++|||+||+||+||+||+++++|+||+|||+
T Consensus 284 t~Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~~~d~lq~lty~ 363 (393)
T cd02826 284 VIIVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNWSLNELEILTYI 363 (393)
T ss_pred EEEEEeccccceeccCCCCCCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999997643 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCccccchhHHHHHHHHHHhh
Q 002636 827 LSYVYQRSTTAVSVVTPICYAHLAAAQMSQ 856 (898)
Q Consensus 827 Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~ 856 (898)
|||+|+||+++||+|+|+||||++|+|||+
T Consensus 364 lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 364 LCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred HhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 999999999999999999999999999984
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=2.9e-67 Score=578.09 Aligned_cols=284 Identities=45% Similarity=0.656 Sum_probs=247.0
Q ss_pred EEEEEecCCCCCcchHHHHHHhhhccCceeeeeecccc-----chhhHHHHHHHHHhccCCcc-ccccccccCCCCCccC
Q 002636 560 LLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKV-----NDQYITNVLLKINAKLGGMN-SLLTLEHSRSIPLVSK 633 (898)
Q Consensus 560 lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~-----~~q~~~Ni~lKiN~KLGG~n-~~~~~~~~~~~p~~~~ 633 (898)
++|||+|+ ++.+.|+.+|++++.+.||+||||..+++ ..+++.||++|||+||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 58899998 78899999999999999999999997532 36889999999999999996 554432 11222
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCCCCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhC
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSG 713 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 713 (898)
.++||||+||+|++++....||++|+|+|+|. ..++|.+.+..|..++|++++|. ++++++|+.|++.++
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~-~~~~~~~~~~~~~~~~e~~~~l~---------~~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFDS-DGSKYFSSVRFQDSGQEIIDNLE---------EIIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEEST-TTCEEEEEEEEECTTCCCHHHHH---------HHHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEeccC-ccccccceeEEeccchhhhcchh---------hHHHHHHHHHHHHcC
Confidence 78999999999998765457999999999994 88999999999999999998864 599999999977654
Q ss_pred CCCCceEEEeecCccccchhh---------HHHhhcccCCCCceEEEEEeeecccceeecCCCC---CCCCCeeeeeccc
Q 002636 714 KRKPENIIIFRLNTLSCTFLQ---------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRP---ENVPPGTVVDKGV 781 (898)
Q Consensus 714 ~~~P~~IIiyRDGVsegq~~~---------~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~---~N~~pGTvVD~~i 781 (898)
+.+|++|||||||||||||.+ ++||+++..+|+|+|+||+|+||||+|||+.+.. .||+||||||+.+
T Consensus 145 ~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i 224 (302)
T PF02171_consen 145 KWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGI 224 (302)
T ss_dssp T-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEE
T ss_pred CCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccccccCCCCCCeeeccce
Confidence 349999999999999999987 6788888889999999999999999999998764 5999999999999
Q ss_pred ccCCcccEEeecccCCcccccCceEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhhhcc
Q 002636 782 CHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIK 859 (898)
Q Consensus 782 t~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l~ 859 (898)
|+|..+||||+||.++|||+||+||+|||||++++.|+||+|||+|||+|++|++++|+|+|+||||++|+|++++++
T Consensus 225 ~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 225 TSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp EECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred eeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=9.3e-44 Score=405.55 Aligned_cols=280 Identities=19% Similarity=0.245 Sum_probs=214.4
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCC------CcchHHHHHHhhhccCceeeeeecccc-----chhhHHHHHHHHHhcc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKN------SDIYGPWKRKNLSEAGIVTQCIAPTKV-----NDQYITNVLLKINAKL 613 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~------~~~Y~~iK~~~~~~~gI~TQci~~~~~-----~~q~~~Ni~lKiN~KL 613 (898)
..++...+.....++++||++|+ +. .++|+.||+++ .+.||+||||..+++ ..+++.||++|||+|+
T Consensus 98 ~a~~~~~~~~~~~~~~~lvilP~-~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKl 175 (404)
T cd04659 98 EAVDLALSESSQGVDVVIVVLPE-DLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKL 175 (404)
T ss_pred HHHHHHHHhhcCCCCEEEEEeCH-HHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhc
Confidence 33333333323468999999998 43 78999999987 579999999997543 3457899999999999
Q ss_pred CCccccccccccCCCCCccCCcEEEEEEEeecCCCCCCCCCeEEEEEeecCCCCcceeeEEEEeccCCceeeccccCCCC
Q 002636 614 GGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGS 693 (898)
Q Consensus 614 GG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~ 693 (898)
||+||.++.. ...+|||||+||+|+..+....+++|++ .|. .... .+..+...++.+.+- +
T Consensus 176 GG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~v---f~~-~g~g---~~~~~~~~~~~~~~~----~ 236 (404)
T cd04659 176 GGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQV---FDS-DGLG---LILRGAPIEEPTEDR----S 236 (404)
T ss_pred CCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEE---EcC-CCCE---EEEecCccCCccccc----C
Confidence 9999999632 1367999999999997542222333333 332 1111 122222233322210 1
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCceEEEeecCcc-ccchhh-HHHhhcccCCCCceEEEEEeeecccceeecCCCC---
Q 002636 694 ETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTL-SCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRP--- 768 (898)
Q Consensus 694 ~~~~~~~~~~~l~~~~~~~~~~~P~~IIiyRDGVs-egq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~--- 768 (898)
.+.+.++++++|..|++.++..+|+||||||||+. +.|+.. ++||++++ |+++||+|+|+||+|||+.+..
T Consensus 237 ~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~f~~~~~~~~ 312 (404)
T cd04659 237 PADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRFTDEEIEGLKEALEELG----IKVDLVEVIKSGPHRLFRFGTYPNG 312 (404)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----ceEEEEEEEecCCcceEEecCCCCC
Confidence 12356799999999977654339999999999986 555555 77887664 8999999999999999986554
Q ss_pred CCCCCeeeeecccccCCcccEEeecccCC--------cccccCceEEEEecCCCCCHHHHHHHHHHhhhccccccC-Ccc
Q 002636 769 ENVPPGTVVDKGVCHPRNNDFYLCAHAGM--------IGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTT-AVS 839 (898)
Q Consensus 769 ~N~~pGTvVD~~it~p~~~dFyL~Sh~~~--------qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~-svs 839 (898)
.||++|||||.+ .+||||++|.+. +||++|+| |++|+...+.|+|+++||.||++|+|++. +++
T Consensus 313 ~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~ 385 (404)
T cd04659 313 FPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQFYSR 385 (404)
T ss_pred CCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCCCCCC
Confidence 479999999954 499999999885 99999999 77888889999999999999999999998 999
Q ss_pred ccchhHHHHHHHHHHhh
Q 002636 840 VVTPICYAHLAAAQMSQ 856 (898)
Q Consensus 840 iPaP~~YA~~~a~r~~~ 856 (898)
+|+|+||||++|+..+.
T Consensus 386 lP~ti~YA~~~a~~~~~ 402 (404)
T cd04659 386 LPVTIHYADRVAKLLKR 402 (404)
T ss_pred cceEEeHHHHHHHHHhc
Confidence 99999999999987654
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.87 E-value=3.6e-22 Score=192.77 Aligned_cols=130 Identities=38% Similarity=0.590 Sum_probs=107.7
Q ss_pred chHHHHHHhhcCCCCCccccH-HHHHhhhcCcEEEeecCC--ceEEEeecCCCCCCcceeecccCCCCCCCCCCeeeeHH
Q 002636 275 GPVVNFLLANQNVREPHQIDW-NKAKRVLKNLRINTNHSN--TEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVY 351 (898)
Q Consensus 275 ~~l~d~l~~~~~~~~~~~~~~-~~i~~~Lkgl~V~~~y~~--r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~iSv~ 351 (898)
++|+|++.+..+........+ +++++.|+|++|.+.|++ |.|+|.+|++.++++.+|..+. ++.+||+
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~---------g~~itv~ 71 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND---------GKEITVA 71 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT---------SEEEEHH
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC---------CceEEhH
Confidence 478999998776554333222 348999999999999998 9999999999999999998762 3699999
Q ss_pred HHHHHhcCCcccCCCCCceEecCCCCC--cccccccceEEccCccccccCCHHHHHHHHHHhhCC
Q 002636 352 EYFVNNRHIKLEYSADFPCINVGKPKR--ASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQK 414 (898)
Q Consensus 352 ~Yf~~~Y~i~L~~~p~lPlv~vg~~~~--~~ylP~Elc~i~~~Q~~~~~l~~~q~~~mik~~~~~ 414 (898)
|||+++||++|+| |+||||+++..++ ++|||||||.|+|+|++.+++.+.+++.|++.+|.+
T Consensus 72 eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 72 EYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp HHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred HHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 9999999999999 9999999998877 999999999999999999999999999999998763
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.76 E-value=2.2e-18 Score=161.08 Aligned_cols=106 Identities=24% Similarity=0.365 Sum_probs=89.5
Q ss_pred cchHHHHHHhhcCCCCC----ccccHHHHHhhhcCcEEEeecC--CceEEEeecCCCCCCcceeecccCCCCCCCCCCee
Q 002636 274 PGPVVNFLLANQNVREP----HQIDWNKAKRVLKNLRINTNHS--NTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIE 347 (898)
Q Consensus 274 ~~~l~d~l~~~~~~~~~----~~~~~~~i~~~Lkgl~V~~~y~--~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~ 347 (898)
+++|+|++.+..+.++. .+.++.++.++|+|++|.++|+ +|.|+|.+|++.+|++. |...+ +.+
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~---------~~~ 70 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD---------GKE 70 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC---------CCE
Confidence 36899999887654322 2346678999999999999998 79999999999999988 75332 258
Q ss_pred eeHHHHHHHhcCCcccCCCCCceEecCCC---CCcccccccceEEc
Q 002636 348 ITVYEYFVNNRHIKLEYSADFPCINVGKP---KRASYIPLELCTLV 390 (898)
Q Consensus 348 iSv~~Yf~~~Y~i~L~~~p~lPlv~vg~~---~~~~ylP~Elc~i~ 390 (898)
+||+|||+++||++|+| |+||||++|+. .+.+|||||||.|+
T Consensus 71 isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 71 ITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred EEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 99999999999999999 99999999987 67899999999985
No 11
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.76 E-value=3.6e-18 Score=159.93 Aligned_cols=107 Identities=41% Similarity=0.791 Sum_probs=92.0
Q ss_pred chHHHHHHhhcCCCCC---ccccHHHHHhhhcCcEEEeecC---CceEEEeecCCCCCCcceeecccCCCCCCCCCCeee
Q 002636 275 GPVVNFLLANQNVREP---HQIDWNKAKRVLKNLRINTNHS---NTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEI 348 (898)
Q Consensus 275 ~~l~d~l~~~~~~~~~---~~~~~~~i~~~Lkgl~V~~~y~---~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~i 348 (898)
++|+|+++++.+.... ...++.++.++|+|++|.++|+ +|.|+|.||++.++.+.+|..++. +.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~--------~~~i 73 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDG--------EKEI 73 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCC--------CcEE
Confidence 6889999987765432 2336678999999999999997 699999999999998999976531 1489
Q ss_pred eHHHHHHHhcCCcccCCCCCceEecCCCCCcccccccceEEc
Q 002636 349 TVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLV 390 (898)
Q Consensus 349 Sv~~Yf~~~Y~i~L~~~p~lPlv~vg~~~~~~ylP~Elc~i~ 390 (898)
||+|||+++||++|+| |+||||++|+.++++|+|||||.|.
T Consensus 74 sV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 74 SVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999 9999999999888999999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.75 E-value=1.6e-18 Score=161.39 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=88.1
Q ss_pred chHHHHHHhhcCCCCCccccHHHHHhhhcCcEEEeecCCceEEEeecCCCCCCcceeecccCCCCCCCCCCeeeeHHHHH
Q 002636 275 GPVVNFLLANQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYF 354 (898)
Q Consensus 275 ~~l~d~l~~~~~~~~~~~~~~~~i~~~Lkgl~V~~~y~~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~iSv~~Yf 354 (898)
.+++|++.+..+... ....++++++.|+|+.|.+.|++|.|+|.+|++.+++.++|..++ +.++||+|||
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~---------~~~~S~~~Yy 71 (117)
T cd02845 2 TTVLDRMHKLYRQET-DERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSD---------GTEITFVEYY 71 (117)
T ss_pred eeHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCC---------CCeeeHHHHH
Confidence 367787776543221 112567899999999999999999999999999999999996432 1378999999
Q ss_pred HHhcCCcccCCCCCceEecCCC--------CCcccccccceEEccC
Q 002636 355 VNNRHIKLEYSADFPCINVGKP--------KRASYIPLELCTLVSL 392 (898)
Q Consensus 355 ~~~Y~i~L~~~p~lPlv~vg~~--------~~~~ylP~Elc~i~~~ 392 (898)
+++||+.|+| |+||||+++.+ .+++|||||||.++|.
T Consensus 72 ~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltgl 116 (117)
T cd02845 72 KKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGL 116 (117)
T ss_pred HHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCC
Confidence 9999999999 99999999763 3479999999999973
No 13
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.43 E-value=1.7e-13 Score=130.45 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=70.0
Q ss_pred HHhhhcCcEEEeecCCceEEEeecCCCCCCcceeecccCCCCCCCCCCeeeeHHHHHHHhcCCcccCCCCCceEecCC--
Q 002636 298 AKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGK-- 375 (898)
Q Consensus 298 i~~~Lkgl~V~~~y~~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~iSv~~Yf~~~Y~i~L~~~p~lPlv~vg~-- 375 (898)
..+.|+|+.|.+.|++|.|+|.+|+ ..+++++|..+++ +..+||+|||+++|||+|+| |+||||++..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~--------~~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~~~ 96 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEG--------LGYATYAEYFKEKYGIVLNH-PNQPLLKGKQIF 96 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCC--------CceeeHHHHHHHHhCceecc-CCcceEEEeccc
Confidence 4678999999999999999999999 8999999965431 13699999999999999999 9999997541
Q ss_pred ------------------CC---CcccccccceEEcc
Q 002636 376 ------------------PK---RASYIPLELCTLVS 391 (898)
Q Consensus 376 ------------------~~---~~~ylP~Elc~i~~ 391 (898)
.. ..++||||||.+.+
T Consensus 97 ~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 97 NLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccceecccccccccccccccccceEEEeChHHhcccc
Confidence 01 14699999999874
No 14
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.42 E-value=1e-13 Score=108.92 Aligned_cols=51 Identities=51% Similarity=0.744 Sum_probs=41.4
Q ss_pred eccccccCCCCCCcccCCCcEEeeecceEEEEecCCeeeEEeecceeeeecc
Q 002636 223 LVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKP 274 (898)
Q Consensus 223 ~~g~~ff~~~~~~~~~l~~gle~~~Gf~~Svr~~~~gl~LniDv~~~~F~~~ 274 (898)
.+||+||+.+... .+|++|+|+|+||++|+||+.++|+||+|+++++|+++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 5799999987555 68999999999999999999999999999999999975
No 15
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.1e-09 Score=119.79 Aligned_cols=250 Identities=20% Similarity=0.126 Sum_probs=148.3
Q ss_pred CCCcchHHHHHHhhhccCceeeeeecccc---chhhHHHHHHHHHhccCCccccccccccCCCCCccCCcEEEEEEEeec
Q 002636 569 KNSDIYGPWKRKNLSEAGIVTQCIAPTKV---NDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSH 645 (898)
Q Consensus 569 ~~~~~Y~~iK~~~~~~~gI~TQci~~~~~---~~q~~~Ni~lKiN~KLGG~n~~~~~~~~~~~p~~~~~~tMivG~DV~H 645 (898)
++...|+.+|+ .+.-|+||.|...+. -.-++.|++.|+-||-+|+++.+-... ...+-|+|+||+.
T Consensus 416 kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~~--------gpvDaivGlDvsr 484 (685)
T COG1431 416 KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNGL--------GPVDAIVGLDVSR 484 (685)
T ss_pred ccchHHHHHHh---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeeccC--------CCccceeeeeeeE
Confidence 56678999998 556789999986432 244789999999999999999874311 1336899999998
Q ss_pred CCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhCCCCCceEEEee
Q 002636 646 GSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFR 724 (898)
Q Consensus 646 ~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~~IIiyR 724 (898)
..-+ ...+-|++.-.++ ..+-+|+.....- .+ |... -.-+-|.. .....-..-++||+.|
T Consensus 485 ~~~g---n~tV~gct~~f~seg~l~eyy~t~tpa-~G-Erl~-------------~~g~yle~-~~~~gfe~~n~iV~lR 545 (685)
T COG1431 485 VSEG---NWTVEGCTSCFVSEGGLEEYYHTVTPA-LG-ERLE-------------TSGRYLEK-MNWRGFESRNLIVTLR 545 (685)
T ss_pred EeeC---CeEEeeeeEEEeccCceEEeeecccCC-cc-chhh-------------hHHHHHHH-HHhhhhhccCeeEEEe
Confidence 7532 2455443222222 1233333211100 00 1110 01111111 0001113446799999
Q ss_pred cCccccchhhHHHhhcccCCCCceEEEEEeeecccceeecCCCCCCCCCeeeeecccccCCcccEEeecccCCcccccCc
Q 002636 725 LNTLSCTFLQIEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPT 804 (898)
Q Consensus 725 DGVsegq~~~~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPt 804 (898)
||-=-+ ..++|+++++..+.-.++++.+. +.+-+||..+... -|-.+-.++..++.-= --+.....||.+|.
T Consensus 546 DG~l~~--~E~aavkeyg~elgsn~ev~~i~-knNp~vf~~e~~i---~g~f~~~~~s~~h~~~--~~ynpv~~gT~~pi 617 (685)
T COG1431 546 DGKLVA--GEIAAVKEYGGELGSNPEVNRIL-KNNPWVFAIEGEI---WGAFVRLDGSTVHLCC--SPYNPVRRGTPRPI 617 (685)
T ss_pred cCccch--HHHHHHHHHhhhcCCChhhheec-ccCCeEEEeccee---eeEEEecCCccccccc--CCCCceecCCCccc
Confidence 996321 11778888876665455555554 4566699865421 0333332221111000 00124567999987
Q ss_pred eEEEEecCCCCCHHHHHHHHHHhhhccccccCC--ccccchhHHHHHHHHHHhhhcc
Q 002636 805 HYHVLHDEIGFSADDLQELVHSLSYVYQRSTTA--VSVVTPICYAHLAAAQMSQFIK 859 (898)
Q Consensus 805 ~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~s--vsiPaP~~YA~~~a~r~~~~l~ 859 (898)
..-=.++ .+.-|-|- |.|.|+-|.+.+... .+||||++|||++.+.++.-++
T Consensus 618 ~~r~~~g--~l~~e~i~-lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~~~~ 671 (685)
T COG1431 618 ALRRRDG--KLDGELIG-LVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARYGVS 671 (685)
T ss_pred ccccccC--ccchhhHH-HHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhccCC
Confidence 6553333 34555555 999999999988888 9999999999999999988554
No 16
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.67 E-value=3.1e-08 Score=90.97 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=57.1
Q ss_pred hhhcCcEEEeecCC----ceEEEeecCCCCCCcceeecccCCCCCCCCCCeeeeHHHHHHHhcCCcccCCCCCceEecCC
Q 002636 300 RVLKNLRINTNHSN----TEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGK 375 (898)
Q Consensus 300 ~~Lkgl~V~~~y~~----r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~iSv~~Yf~~~Y~i~L~~~p~lPlv~vg~ 375 (898)
..+.|..|.+.|+| ++|+|.+|.+...+.++|+.+ ..+|++|||+++|||.|++ ++||||.|..
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-----------~~~Ty~eYyk~KY~I~I~~-~~QPLL~v~~ 106 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-----------EYETFEEYYKKKYKLDIQN-LNQPLLDVDH 106 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-----------CCccHHHHHHHhcCeEecc-CCCCcEeecC
Confidence 46789999999998 899999999999999999532 2799999999999999999 9999999854
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=92.01 E-value=0.34 Score=46.69 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=45.5
Q ss_pred cccCceEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhhhc
Q 002636 800 TSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFI 858 (898)
Q Consensus 800 TarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l 858 (898)
.....=.+|+.-...-++++|..|||.||+.+.-+...+++|.|+|+|.+ +.+|+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~----~~eYi 120 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQ----AKEYI 120 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHH----HHHHc
Confidence 44556677777655678999999999999999999999999999999955 55666
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=88.20 E-value=2.4 Score=41.69 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=52.8
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.|.-|-++|+||-.. .-+|+++|.-.|. +.-..|. ...+... +-.+|. .+|.|.|..++++.
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR-~f~i~~~--~~~dDy----------~~M~Evl~RR~~~~ 72 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYR-RFNIKTV--DGGDDY----------AAMREVLTRRFKRL 72 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-E-EEEEE----STT-HH----------HHHHHHHHHHHCCC
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEECCccChhhCc-eEecCCC--CCCcHH----------HHHHHHHHHHHhcc
Confidence 457799999999753 3468888776554 1112332 3334321 111332 48888887766431
Q ss_pred ---CCCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccce
Q 002636 713 ---GKRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTK 761 (898)
Q Consensus 713 ---~~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~R 761 (898)
...+|+-|+| || +.||+.. ++|+++++-. .++.=++=.+.|.++
T Consensus 73 ~~~~~~lPDLilI--DG-G~gQl~aa~~~l~~lgl~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 73 KEEKEPLPDLILI--DG-GKGQLNAAKEVLKELGLN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp HHHT----SEEEE--SS-SHHHHHHHHHHHHCTT------EEEEESSSSE---
T ss_pred cccCCCCCCEEEE--cC-CHHHHHHHHHHHHHcCCC--eEEEEEEeccccccc
Confidence 1268998876 66 4577776 7777776543 333333334446666
No 19
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=78.36 E-value=9.4 Score=45.86 Aligned_cols=109 Identities=26% Similarity=0.227 Sum_probs=64.5
Q ss_pred EEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhCC
Q 002636 636 TMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGK 714 (898)
Q Consensus 636 tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 714 (898)
.-|-++|+||-.+ .-.|+++|.-.|. +.-..|. ..++... +-.+|. .+|+|.|...+++...
T Consensus 382 ~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dDy----------a~m~Evl~RR~~r~~~ 444 (574)
T TIGR00194 382 KRIEIFDISHIDG----SQTVGSMVVFEDGKPLKASYR-RYNINSI--TGGDDY----------AAMREVLRRRYSSIQK 444 (574)
T ss_pred CEEEEEECCccCC----CcceEEEEEEeCCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHHhhhcc
Confidence 6789999999753 2478888876664 1112332 2223211 112332 4788887766544211
Q ss_pred ----CCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeee--cccceeecCC
Q 002636 715 ----RKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQK--NHHTKFFQSG 766 (898)
Q Consensus 715 ----~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~K--rh~~Rff~~~ 766 (898)
.+|+-||| || +-||+.. .+++++++-. ..+.+|-..| ||.+++|..+
T Consensus 445 ~~~~~~PDLili--DG-GkgQl~aa~~~l~~lg~~--~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 445 KNNLPLPDLILI--DG-GKGQLNAALEVLKSLGVV--NKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred ccCCCCCCEEEE--eC-CHHHHHHHHHHHHHcCCC--CCCcEEEEEecCCCceEEEeCC
Confidence 48987776 66 4578777 7777776531 1355666666 7777887643
No 20
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=72.42 E-value=18 Score=43.87 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=64.9
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.|..|-++|+||-.+ .-.|+++|.-.|. +.-..|. ...+.... .-.+|. .+|.|.|...|.+.
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~G~p~k~~YR-~f~ik~~~-~~~DD~----------asM~Evl~RR~~r~ 516 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKNGAPDTKNYR-LFNLRAHD-TRIDDF----------ASMREAIARRYTHT 516 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEECCccChhhCC-eeeccCCC-CCCchH----------HHHHHHHHHHhhcc
Confidence 578899999999753 3478888876664 1112222 22332210 112443 47888887766542
Q ss_pred C--CCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccceeec
Q 002636 713 G--KRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQ 764 (898)
Q Consensus 713 ~--~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~ 764 (898)
. ..+|+-||| || +-||+.. ++++++++- .+.+|-..||.-.-|+|
T Consensus 517 ~~~~~~PDLilI--DG-GkgQl~aa~~vl~elgl----~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 517 PEGYTLPDLILV--DG-GIGHVSAAQHVLDALGL----SIPLVGLAKRAEELFIP 564 (691)
T ss_pred cccCCCCCEEEE--eC-CHHHHHHHHHHHHHcCC----CCcEEEEEecccEEEeC
Confidence 1 258987776 65 4577776 667776653 36688888876444444
No 21
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=68.28 E-value=26 Score=41.53 Aligned_cols=105 Identities=22% Similarity=0.270 Sum_probs=62.5
Q ss_pred cEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhC
Q 002636 635 VTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSG 713 (898)
Q Consensus 635 ~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 713 (898)
|.-|-|+|+||-.+ .-.|+++|.-.|. |.-..|. ...+... +-.+|. .+|.|.|...+.+..
T Consensus 366 p~rIE~fDiSh~~G----~~~V~smVvf~~G~p~k~~YR-~f~Ik~~--~~~dDy----------~~m~Evl~RR~~r~~ 428 (519)
T PRK12306 366 PNVIECFDISHLSG----TSTVGSMVQFRNGKPDKKNYR-RFKIKTV--EGIDDF----------ASIAEVVRRRYSRLL 428 (519)
T ss_pred CCeEEEEECCccCC----CCceEEEEEEeCCccChhhcC-eeecCCC--CCCCHH----------HHHHHHHHHHHhhcc
Confidence 45689999999653 2478888876664 1112232 2333221 112332 478888776654321
Q ss_pred C---CCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccceeec
Q 002636 714 K---RKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQ 764 (898)
Q Consensus 714 ~---~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~ 764 (898)
. .+|+-||| || +-||+.. .+++++++- .+.+|-..|+. .++|.
T Consensus 429 ~~~~~~PDLilI--DG-GkgQl~aa~~~l~elg~----~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 429 EENSELPDLIVI--DG-GKGQLSSAFKELRKLGL----KIPLISIAKRE-EEIYV 475 (519)
T ss_pred cccCCCCCEEEE--eC-CHHHHHHHHHHHHHcCC----CCcEEEEEcCc-eEEEe
Confidence 1 48987776 66 4578777 777777653 36778888876 44554
No 22
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=63.77 E-value=34 Score=41.05 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=63.3
Q ss_pred cEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhC
Q 002636 635 VTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSG 713 (898)
Q Consensus 635 ~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 713 (898)
|.-|-++|+||-.+ .-+|+++|.-.|. +.-..|. ...+... +-.+|. .+|.|.|...|.+..
T Consensus 361 p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dD~----------~~m~Evl~RR~~r~~ 423 (567)
T PRK14667 361 PERIEGFDISHFYG----EFTVGSCVVWEDGSMNKKEYR-RYKIKTV--DGIDDY----------ASLREVLTRRARRYK 423 (567)
T ss_pred CCeEEEEECcccCC----CcceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhhcc
Confidence 56789999999653 3478888876664 1112232 2333221 112443 488888877665421
Q ss_pred ---CCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccceeec
Q 002636 714 ---KRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQ 764 (898)
Q Consensus 714 ---~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~ 764 (898)
+.+|+-||| || +-||+.. .+++++++- .+.+|-..|+. .++|.
T Consensus 424 ~~~~~~PDLili--DG-GkgQl~aa~~~l~~lg~----~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 424 EGENPMPDLWLI--DG-GKGQLSVGIEVRDRLGL----NIKVFSLAKKE-EILYT 470 (567)
T ss_pred ccCCCCCCEEEE--eC-CHHHHHHHHHHHHHcCC----CCcEEEEEecC-cEEEc
Confidence 248987776 66 4577776 777777654 36677777865 44554
No 23
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=62.35 E-value=36 Score=41.38 Aligned_cols=107 Identities=22% Similarity=0.145 Sum_probs=63.6
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.|.-|-++|+||-.+ .-.|+++|.-.|. +.-..|. ...+... +-.+|. .+|.|.|...|.+.
T Consensus 414 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~ik~~--~~~dDy----------~~m~Evl~RR~~r~ 476 (621)
T PRK14671 414 LPRRIECFDNSHFQG----TDYVSSMVCFVDGKPKKSDYR-KFKLRSF--EGSDDY----------AAMREVVTRRYSGS 476 (621)
T ss_pred CCCEEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 356789999999753 2468888776664 2212333 2333221 112332 48888887766442
Q ss_pred C---CCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccceeecC
Q 002636 713 G---KRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQS 765 (898)
Q Consensus 713 ~---~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~~ 765 (898)
. +.+|+-||| || +-||+.. .+++++++- .+.+|-..|+. .++|..
T Consensus 477 ~~~~~~~PDLilI--DG-GkgQl~aa~~vl~~lg~----~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 477 LAEELPLPDLIVI--DG-GKGQVNSAWKVLQELGL----SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHHHHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 1 258987776 66 4577776 777776653 36677778844 555543
No 24
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=58.63 E-value=54 Score=39.45 Aligned_cols=110 Identities=23% Similarity=0.199 Sum_probs=63.5
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.|.-|-++|+||-.+ .-.|+++|.-.|. +.-..|. ...+........+|. .+|.|.|...|++.
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-kf~ik~~~~~~~DD~----------a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKMGKPFKDGYR-VYKINSLLKGEIDDF----------KAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeeccCCCCCCCCHH----------HHHHHHHHHHHhhc
Confidence 356799999999753 2468888876664 1112222 233322100002332 47888887766542
Q ss_pred C---CCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccceeec
Q 002636 713 G---KRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQ 764 (898)
Q Consensus 713 ~---~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~ 764 (898)
. +.+|+-||| || +-||+.. .+++++++-. ..+.+|-..|+--+ +|-
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl~aa~~vl~~lg~~--~~i~v~gLaK~~e~-i~~ 471 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQLNAAYSILKGLKIE--NKVKVCALAKKEET-IFL 471 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHHHHHHHHcCCC--CCceEEEEecCCeE-EEe
Confidence 1 258987776 66 4578777 7777766532 23677778886533 443
No 25
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=55.81 E-value=53 Score=39.93 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=62.5
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.|.-|-++|+||-.+ .-+|+++|.-.|. +.-..|. ...+... +-.+|. .+|+|.|...|.+.
T Consensus 395 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-kf~Ik~~--~~~DDy----------a~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQG----AETVASMVVWEDGKMKKSDYR-KFIIKTV--VGVDDF----------ASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 356789999999653 2468888766664 1112222 2223211 112332 47888877665432
Q ss_pred C--C-CCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccceeec
Q 002636 713 G--K-RKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQ 764 (898)
Q Consensus 713 ~--~-~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~ 764 (898)
. + .+|+-||| || +-||+.. ++++++++-. .+.+|-..|+.. ++|.
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl~aa~~vl~elgl~---~i~vigLaK~~e-~i~~ 506 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQLHAAAEALEAIGIT---DQPLASIAKREE-IIYV 506 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHHHHHHHHcCCC---CCcEEEEecCCe-EEEC
Confidence 1 1 48987776 66 4578777 7777777532 266777778764 4554
No 26
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=54.96 E-value=49 Score=40.19 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=58.9
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.|.-|-++|+||-.+ .-+|+++|.-.|. |.-..|. ...+... +-.+|. .+|+|.|...|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR-~f~i~~~--~~~dDy----------a~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYR-RYNIKGV--TGGDDY----------AAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCC-eeecCCC--CCCCHH----------HHHHHHHHHHhhcc
Confidence 356789999999653 3478888776664 2212333 2333221 112332 47888887665442
Q ss_pred ---CCCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeee
Q 002636 713 ---GKRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQK 756 (898)
Q Consensus 713 ---~~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~K 756 (898)
.+.+|+-||| || +-||+.. .+++++++- .+.+|-..|
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl~~a~~~l~~lg~----~i~v~glaK 485 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQLNAAKEVLEELGL----DIPVVGLAK 485 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHHHHHHHHHCCC----CCcEEEEEe
Confidence 1258987776 66 4578877 777777654 255666666
No 27
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=53.25 E-value=33 Score=32.03 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 543 VERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 543 l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
+...++.++.. +..|.|+++.+.+...+..|...|.-.+.+.||.+..+.. .....+-+...+.++|.-
T Consensus 16 l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 16 LKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 33444555544 3458898888866445678999998888999999999985 455666778888888754
No 28
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=47.57 E-value=88 Score=38.32 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=58.8
Q ss_pred CcEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHh
Q 002636 634 PVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTS 712 (898)
Q Consensus 634 ~~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~ 712 (898)
.|.-|-++|+||-.+ .-+|+|+|.-.|. +.-..|. .+.+... + .+|. .+|.|.+...+++.
T Consensus 471 ~p~rIE~~DiSh~~G----~~~v~~mVvf~~G~p~k~~YR-~f~i~~~--~-~dD~----------~~m~ev~~RR~~~~ 532 (694)
T PRK14666 471 PPHRIEAVDVSHTGG----RNTRVGMVVFEDGKPARDAYR-TYAFEDG--E-GDDY----------GTLAAWAGRRVESG 532 (694)
T ss_pred CCCEEEEEECcccCC----cCceEEEEEEECCccChhhCC-eeeCCCC--C-CChH----------HHHHHHHHHHhcCC
Confidence 456889999999753 3467787766654 1112222 2223221 1 1332 48888887665432
Q ss_pred CCCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeee
Q 002636 713 GKRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQK 756 (898)
Q Consensus 713 ~~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~K 756 (898)
..+|+-||| || +.||+.. .+++++++-+ ..+.+|-..|
T Consensus 533 -~~~PDLili--DG-G~gQl~aa~~~l~e~g~~--~~~~v~~laK 571 (694)
T PRK14666 533 -PPWPDLLLV--DG-GRGQLAAVVRALEEAGMG--GLFAVASIAK 571 (694)
T ss_pred -CCCCCEEEE--cC-CHHHHHHHHHHHHHcCCC--CCccEEEEec
Confidence 258987776 66 4578777 7777776542 1356777777
No 29
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.13 E-value=56 Score=35.76 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 543 VERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 543 l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
+...++.++++....|.|+++...++..+..|.+.|.-.+.+.||.+..+.. ......-+.++..++|.
T Consensus 17 l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 17 IAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred HHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3334444544433468898888877566788999999899999999998875 33444456677778874
No 30
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=46.78 E-value=12 Score=37.57 Aligned_cols=21 Identities=38% Similarity=0.999 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCcccCCC
Q 002636 8 GSEYLPPPPPIIPPNVVPLQSG 29 (898)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (898)
+-+++|||||++|| ++|+.-+
T Consensus 165 ~~sfmpppPP~pp~-i~p~~~d 185 (218)
T KOG4327|consen 165 WNSFMPPPPPMPPP-ICPDSLD 185 (218)
T ss_pred ccccCCCCCCCCcc-cCCCCch
Confidence 56789999998555 5565433
No 31
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.22 E-value=75 Score=34.71 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
..+++++++....|.|+++...++..+..|.+.|.-.+.+.||.+..+.. .....+-+.+.+.++|.
T Consensus 20 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 20 LEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 33444444323457888888876566788999988888899999998875 34555557777777774
No 32
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=44.75 E-value=1.2e+02 Score=31.62 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=30.3
Q ss_pred ccCceEEEEecCCCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHH
Q 002636 801 SRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAA 852 (898)
Q Consensus 801 arPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~ 852 (898)
.+|....+= ..++.|+--+++-.+|- .-++|.|+..||++|.
T Consensus 166 ~~PiyVS~G---h~i~l~~A~~~v~~~~~-------~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 166 VKPVYVSPG---HRIDLETAVELVLKCCK-------GYRLPEPTRLADLLSR 207 (208)
T ss_pred CCCEEEcCC---CCcCHHHHHHHHHHHcc-------CCCCCcHHHHHHHHhc
Confidence 456544432 35788888888886663 3689999999999975
No 33
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=44.53 E-value=11 Score=18.80 Aligned_cols=7 Identities=71% Similarity=1.412 Sum_probs=5.2
Q ss_pred CCCCCCC
Q 002636 9 SEYLPPP 15 (898)
Q Consensus 9 ~~~~~~~ 15 (898)
.|||||-
T Consensus 2 ~eYLpP~ 8 (9)
T PF02757_consen 2 NEYLPPV 8 (9)
T ss_pred ccccCCC
Confidence 5899873
No 34
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.81 E-value=87 Score=34.30 Aligned_cols=68 Identities=13% Similarity=0.254 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
..++.++.+....|.|+++...++..+..|...|.-.+.+.||.+..+.. ......-+..++.++|.-
T Consensus 20 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 20 TCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443322357898888876567889999999899999999999875 344454577788888743
No 35
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.22 E-value=98 Score=33.79 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=48.2
Q ss_pred HHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 546 MFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 546 ~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
.++.++++....|.|+++...++..+..|.+.|.-.+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 27 ~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 27 GVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred HHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444443322357898888877567889999999999999999998875 34455557788888885
No 36
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=43.02 E-value=90 Score=37.71 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=58.6
Q ss_pred cEEEEEEEeecCCCCCCCCCeEEEEEeecCC-CCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHHHHHHhC
Q 002636 635 VTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSG 713 (898)
Q Consensus 635 ~tMivG~DV~H~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 713 (898)
|.-|-++|+||-.+ .-.|+++|.-.|. +.-..|. ...+.. + .+|. .+|.|.|...+.+..
T Consensus 375 p~rIE~fDiSh~~G----~~~V~s~Vvf~~G~~~k~~YR-~f~i~~-~---~dD~----------~~m~Evl~RR~~r~~ 435 (577)
T PRK14668 375 PERIEGFDVSHAQG----RAVVGSNVCFVDGSAETADYR-RKKLTE-R---NDDY----------ANMRELVRWRAERAV 435 (577)
T ss_pred CCEEEEEECCccCC----CCceEEEEEEECCccCHHHcC-eecCCC-C---CChH----------HHHHHHHHHHHHhhh
Confidence 45789999999653 2478888876664 1112232 233322 1 2443 477777766554311
Q ss_pred -----CCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecc
Q 002636 714 -----KRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNH 758 (898)
Q Consensus 714 -----~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh 758 (898)
+.+|+-||| || +-||+.. .+++++++- .+.+|-..|+.
T Consensus 436 ~~~~~~~~PDLili--DG-G~gQl~aa~~~l~elg~----~i~v~glaK~~ 479 (577)
T PRK14668 436 EGRDDRPDPDLLLI--DG-GDGQLGAARDALAETGW----DVPAIALAKAE 479 (577)
T ss_pred ccccCCCCCCEEEE--eC-CHHHHHHHHHHHHHcCC----CCcEEEEEcCC
Confidence 258987776 65 3477776 777777653 36677777754
No 37
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.89 E-value=86 Score=34.23 Aligned_cols=69 Identities=17% Similarity=0.332 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 543 VERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 543 l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
+...++.++++....|.|+++...++..+..|...|.-.+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 17 l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 17 LKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3334444544433457888888876566789999999889999999998875 34455557788888885
No 38
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.12 E-value=83 Score=34.22 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=43.4
Q ss_pred CCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 557 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
.|.|+++...++..+..|.+.|.-.+.+.||.+..+.. ......-+.+...++|.
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57898888877567889999999999999999998875 34444457777888873
No 39
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.30 E-value=98 Score=34.85 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 546 MFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 546 ~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
.+++++++....|.|+++.+.++..+..|...|.-.+.+.||.+..+.. .....+-+.+.+.++|.
T Consensus 92 ~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 92 EVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3444544433357899888877567889999999889999999988874 34445456677778874
No 40
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.28 E-value=89 Score=34.95 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 547 FEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 547 ~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
++.++++....|.|+++.+.++.++..|.+.|.-.+.+.||.+..+.. ......-+..++.++|.
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444333457898888877567889999999899999999998875 33444446677888874
No 41
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.83 E-value=96 Score=34.04 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
..++.++++....|.|+++...++..+..|.+.|.-.+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 20 ~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 20 AQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred HHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444323357888888876556788999999899999999998875 344555577888888863
No 42
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=39.55 E-value=1.1e+02 Score=33.61 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=47.0
Q ss_pred HHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 547 FEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 547 ~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
.+.++++....|.|+++...++..+..|.+.|.-.+.+.||.+-.+.. ......-+...+.++|.-
T Consensus 29 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 29 VAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334443323357888888876566788999999889999999998875 445555566777777743
No 43
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.81 E-value=94 Score=33.90 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 543 VERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 543 l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
+...++.++++....|.|+++...++..+..|.+.|.-.+.+.||.+..+.. ......-+...+.++|.-
T Consensus 19 lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 19 VAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444444322357888888766456788999999899999999999876 344555566777888854
No 44
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.74 E-value=1.1e+02 Score=33.65 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 544 ERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 544 ~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
...++.++++....|.|+++...++..+..|...|.-.+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 19 ~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 19 AAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444443322357898888877566788999999888999999988875 344444567788888754
No 45
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.71 E-value=94 Score=33.94 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc--cCCccccc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK--LGGMNSLL 620 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K--LGG~n~~~ 620 (898)
..++.++++....|.|+++...++..+..|..+|...+.+.||.+..+.. ......-+..++.++|.. ..|+|-.+
T Consensus 21 ~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 21 VRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 33344444322357898888877567889999999999999999998876 234444578888889875 56775544
No 46
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.65 E-value=1.1e+02 Score=33.41 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh--ccCCc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA--KLGGM 616 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~--KLGG~ 616 (898)
..+++++++....|.|+++...+...+..|...|.-.+.+.||.+..+.. ......-+.+.+.++|. ..-|+
T Consensus 21 ~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GI 95 (284)
T PRK14177 21 ETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGI 95 (284)
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeE
Confidence 33444444322357898888866456788999998888999999999885 34455567788888886 44454
No 47
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.86 E-value=1e+02 Score=33.91 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 543 VERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 543 l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
+...++.++++....|.|+++...++..+..|.+.|.-.+.+.||.+-.+.. ......-+...+.++|.
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344445544423357898888876566788999999899999999988764 34445456677888874
No 48
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.76 E-value=1.1e+02 Score=33.66 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 546 MFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 546 ~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
.++.++++....|.|+++...++..+..|.+.|.-.+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 20 ~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 20 RVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344443322357898888877566789999999999999999988875 344444567777888753
No 49
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.68 E-value=1.1e+02 Score=33.46 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
..++.++++....|.|+++...+...+..|.+.|.-.+.+.||.+..+.. ......-+.+++.++|.
T Consensus 19 ~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 19 TQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33344443322357888888866456788999999889999999999875 33444457778888874
No 50
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.85 E-value=1.1e+02 Score=33.23 Aligned_cols=68 Identities=10% Similarity=0.218 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 543 VERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 543 l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
+...++.++++ ...|.|+++...++..+..|.+.|.-.+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 17 l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 17 LKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33334444433 2357898888877567889999999999999999998875 33444456777888875
No 51
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.04 E-value=1.3e+02 Score=32.94 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
..++.++.+....|.|+++...++..+..|...|.-.+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 20 ~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 20 EKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443322357898888876566789999998888899999988875 344555677888888753
No 52
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.95 E-value=1.1e+02 Score=33.34 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=46.7
Q ss_pred HHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeecc-ccchhhHHHHHHHHHh
Q 002636 546 MFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPT-KVNDQYITNVLLKINA 611 (898)
Q Consensus 546 ~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~-~~~~q~~~Ni~lKiN~ 611 (898)
.++.++++ ...|.|+++...++..+..|...|.-.+.+.||.+..+... .....-+.+.+.++|.
T Consensus 20 ~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 20 KNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred HHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444433 23578888888765567889999998999999999999863 3444456777778874
No 53
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.90 E-value=1.3e+02 Score=32.84 Aligned_cols=68 Identities=13% Similarity=0.225 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
..++.++++....|.|+++..-++..+..|.+.|.-.+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 19 ~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 19 NKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444443323457888888876567889999999999999999988875 344444567788888853
No 54
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.57 E-value=1.2e+02 Score=33.02 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=43.2
Q ss_pred CCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 557 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
.|.|+++...++..+..|.+.|.-.+.+.||.+..+.. .....+-+.+.+.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57888888876456789999999999999999998875 344444566777888754
No 55
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.54 E-value=1.3e+02 Score=33.23 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=43.1
Q ss_pred CCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 557 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
.|.|+++...++..+..|.+.|.-.+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57898888877566788999999899999999988875 34445556677777774
No 56
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.87 E-value=1.3e+02 Score=32.73 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
..++.++++ ...|.|+++...++..+..|.+.|.-.+.+.||.+..+.. ......-+...+.++|.-
T Consensus 21 ~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 21 EEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444433 2357888888876566788999999888999999999875 344444567777888754
No 57
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.65 E-value=1.4e+02 Score=32.39 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 543 VERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 543 l~~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
+...++.++++-...|.|+++...++..+..|...|.-.+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 18 lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 18 IKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444443311247888888877556778999988888899999988875 344444466777888753
No 58
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=32.00 E-value=36 Score=31.99 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred hccccccCCccccchhHHHHHHHHHHhhhc
Q 002636 829 YVYQRSTTAVSVVTPICYAHLAAAQMSQFI 858 (898)
Q Consensus 829 ~~y~~~t~svsiPaP~~YA~~~a~r~~~~l 858 (898)
|-|+-.-.+-=+|.|+++||+++.|....-
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R 41 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVR 41 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHH
Confidence 445555567779999999999999987744
No 59
>PRK00766 hypothetical protein; Provisional
Probab=31.13 E-value=88 Score=32.07 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHhh
Q 002636 813 IGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQ 856 (898)
Q Consensus 813 ~~~~~d~lq~lT~~Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~ 856 (898)
.+++.++-.+++-.+|.-| ++|.|+..||++|.....
T Consensus 152 ~gi~l~~A~~lv~~~~~~~-------riPEPlR~Ahlia~~~~~ 188 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTRS-------LIPEPLRLAHLIASGVML 188 (194)
T ss_pred cCCCHHHHHHHHHHhccCC-------CCchhhHHHHHHHHHhhc
Confidence 4688999999999888533 689999999999876543
No 60
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.31 E-value=1.7e+02 Score=31.99 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=44.1
Q ss_pred CCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 556 GPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 556 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
..|.|+++...++..+..|.+.|...+.+.||.+..+.. ......-+.+++.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357888888876556789999999999999999999875 344444577888888853
No 61
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.83 E-value=1.7e+02 Score=31.96 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 557 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
.|.|+++..-++..+..|.+.|.-.+.+.||.+-.+.. ......-+.+...++|.
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 31 KPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888876556788999999899999999998875 33444446677778874
No 62
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.82 E-value=1.8e+02 Score=31.75 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 556 GPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 556 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
..|.|+++...++..+..|.+.|...+.+.||.+..+.. ......-+..+..++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467898888876566789999999999999999999875 34444456688888873
No 63
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.76 E-value=1.8e+02 Score=31.90 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=43.3
Q ss_pred CCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 557 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
.|.|+++...++..+..|...|.-.+.+.||.+-.+.. ......-+.+...++|.-
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 31 TPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57888888876556788999999899999999988875 344445577778888753
No 64
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.75 E-value=2.1e+02 Score=31.32 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
..++.++++ ...|.|+++...++..+..|...|.-.+.+.||.+-.+.. ......-+..++.++|.
T Consensus 21 ~~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 21 QRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 333444433 2357898888877567889999999899999999988875 34455556777778874
No 65
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=27.70 E-value=2.6e+02 Score=33.73 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=58.3
Q ss_pred cEEEEEEEeecCCCCCCCCCeEEEEEeecCCCCcceeeEEEEeccCCceeeccccCCCCCCchHHHHHHHHHH-HHHHhC
Q 002636 635 VTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVD-FYSTSG 713 (898)
Q Consensus 635 ~tMivG~DV~H~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~l~~-~~~~~~ 713 (898)
|.-|-++|.+|-... -.|+++|--.|.....+.+-...+.. +-.+|. .+|.|.|.. |.+...
T Consensus 379 p~rIE~~D~Sh~~g~----~~V~smvvf~~g~~~k~~YRry~i~~---~~~dDy----------a~m~evl~RR~~~~~~ 441 (581)
T COG0322 379 PYRIECFDISHIQGE----DTVGSMVVFEDGGPSKKDYRRYNIKI---TGGDDY----------ASMREVLTRRYSRLLK 441 (581)
T ss_pred ceeEEEeecCccccc----cceeEEEEEcCCCCChhhcccccccC---CCCchH----------HHHHHHHHHHhhhccc
Confidence 566889999997632 35777776665411111111111110 112332 466676653 322223
Q ss_pred CCCCceEEEeecCccccchhh-HHHhhcccCCCCceEEEEEeeecccceeec
Q 002636 714 KRKPENIIIFRLNTLSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKFFQ 764 (898)
Q Consensus 714 ~~~P~~IIiyRDGVsegq~~~-~~a~~~l~~~~~Pkit~Ivv~Krh~~Rff~ 764 (898)
..+|+-|+| || +-||+.. ++++++++-.. | +|-+.|+-.+-|++
T Consensus 442 ~~~Pdli~i--DG-GkgQl~~a~~vl~~l~~~~-~---viglaK~~~~~~~~ 486 (581)
T COG0322 442 EELPDLILI--DG-GKGQLNAAKEVLKELGLDI-P---VIGLAKGEEELLLP 486 (581)
T ss_pred cCCCCEEEE--eC-CHHHHHHHHHHHHHcCCCc-c---EEEEEecCceeEec
Confidence 379976665 65 4577777 77787775443 2 77788887744444
No 66
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.13 E-value=1.8e+02 Score=31.65 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=42.7
Q ss_pred CCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 557 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
.|.|+++...+...+..|...|.-.+.+.||.+-.+.. .....+-+.+...++|.
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888876556788999999899999999988875 34455556677777774
No 67
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.79 E-value=2.3e+02 Score=30.88 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=44.0
Q ss_pred CCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHhc
Q 002636 556 GPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINAK 612 (898)
Q Consensus 556 ~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~K 612 (898)
..|.|+++...++..+..|-+.|.-.+.+.||.+..+.. ......-+.....++|.-
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467898888876566788999999899999999999875 344455567778888743
No 68
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=25.49 E-value=2e+02 Score=31.30 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCCCCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 545 RMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 545 ~~~~~~~~~~~~~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
...+.++++....|.|+++...+...+..|-+.|...+.+.||.+..... ......-+.++..++|.
T Consensus 18 ~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 18 EKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 33344444323367888888876456789999999999999999999886 44555567778888864
No 69
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.27 E-value=2e+02 Score=31.40 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=42.3
Q ss_pred CCeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeec-cccchhhHHHHHHHHHh
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAP-TKVNDQYITNVLLKINA 611 (898)
Q Consensus 557 ~~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~~~~~q~~~Ni~lKiN~ 611 (898)
.|.|+++...++..+..|.+.|.-.+.+.||.+-.+.. ......-+.+...++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57888888876556788999999999999999998875 33444456677778874
No 70
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=21.66 E-value=65 Score=35.64 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred hhhccccccCCccccchhHHHHHHHHHHhhhcc
Q 002636 827 LSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIK 859 (898)
Q Consensus 827 Lc~~y~~~t~svsiPaP~~YA~~~a~r~~~~l~ 859 (898)
+-|-|+-.-.+.=+|+|++|||++++|..++-+
T Consensus 125 imFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk 157 (388)
T COG0192 125 IMFGYACNETPELMPLPISLAHRLLRRLAEVRK 157 (388)
T ss_pred eEeeeecCCcccccChHHHHHHHHHHHHHHHHh
Confidence 456777777888899999999999999988543
No 71
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.39 E-value=1.2e+02 Score=31.19 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=30.8
Q ss_pred CeEEEEEecCCCCCcchHHHHHHhhhccCceeeeeeccccchhhHHHHH
Q 002636 558 PQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVNDQYITNVL 606 (898)
Q Consensus 558 ~~lvlvIlp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~~q~~~Ni~ 606 (898)
.+++++--.. +....|+.||+ ..+.|.+|-|++.-+.+.|.+.|++
T Consensus 132 VSiv~ftd~w-rP~SfydkI~~--Nr~~glHTLcLLDIkvkEqs~enl~ 177 (272)
T KOG3123|consen 132 VSIVFFTDNW-RPESFYDKIKE--NRQLGLHTLCLLDIKVKEQSVENLA 177 (272)
T ss_pred EEEEEEccCc-CchhHHHHHHH--hhhcCceeEEEEEEeeccHHHHHHh
Confidence 3444443322 45678999985 6789999999987566666555553
Done!