Query 002636
Match_columns 898
No_of_seqs 189 out of 1132
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 15:46:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002636.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1356-1360//hhsearch_pdb/002636hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1441.8 77.1 799 37-898 24-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1342.3 62.0 832 34-898 13-1046(1046)
3 1yvu_A Hypothetical protein AQ 1.0 1 1 813.9 37.8 652 56-859 6-694 (706)
4 1u04_A Argonaute, hypothetical 1.0 1 1 775.0 38.9 660 52-862 3-760 (771)
5 2yhb_A QDE-2, post-transcripti 1.0 1 1 761.7 20.1 395 478-898 2-437 (437)
6 3ho1_A Argonaute; argonaute, p 1.0 1 1 665.5 50.1 640 51-856 5-668 (685)
7 2yha_A Post-transcriptional ge 1.0 1 1 623.3 23.0 352 478-898 2-388 (388)
8 2w42_A PIWI, putative uncharac 1.0 1 1 426.5 13.3 359 454-862 4-409 (427)
9 1vyn_A Argonaute2; nucleic aci 1.0 1 1 199.2 8.5 131 272-414 2-143 (143)
10 4g0o_A Protein argonaute 5; MI 1.0 1 1 189.0 10.4 132 480-620 2-139 (139)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1441.78 Aligned_cols=799 Identities=32% Similarity=0.543 Sum_probs=684.8
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH-CCCCCEEEE
Q ss_conf 7457678999989986899925989786058812899887753179998888136799999999985010-169635771
Q 002636 37 KRLPMARRNHGTKGTPMTLLTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHE-LEGKHFAYD 115 (898)
Q Consensus 37 ~~~~~~RP~~Gt~G~~i~L~tN~f~i~~~~~~~~~y~YdV~i~~~~~p~~~~k~~~r~i~~~l~~~~~~~-~~g~~~vyD 115 (898)
...+|+|||+||.|++|.|+||||++++. ++.+|||||+|.| +.++++++|++++++.+++..+ |++..++||
T Consensus 24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEEECC--CCCEEEEEEEECC----CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 56679899789888478999556998778--8862650378478----76767799999999998755665068607875
Q ss_pred CCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHCC
Q ss_conf 97503323555676507999970565554567899999999998864345689999659999998200175889999717
Q 002636 116 GEKSLFTLGSFQRKKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRG 195 (898)
Q Consensus 116 G~~~Lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~l~~l~~~l~g 195 (898)
|+++|||+++||.+...+++.+... + ..++++|+|+|++++++++.+|..|++|
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~--------------~------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLP--------------G------------EGKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCCCCEEEEEECC--------------C------------CCCCCEEEEEEEEEEECCHHHHHHHHCC
T ss_conf 8631788876787786369998637--------------8------------8987279999999024388999999649
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEECCEEEEECCC
Q ss_conf 98600589999999998422222484101432238999873248996776305368998628803687522111132165
Q 002636 196 QETEHFQEAMRVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPG 275 (898)
Q Consensus 196 ~~~~~~~~~lq~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~w~G~~~Sir~~~~gl~LniD~s~~~F~~~~ 275 (898)
.....+.+++|+||||||+.+. +++..+||+||++..+...++++|+|+|+||++|||+++++++||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCEECCCCCEEEEECEEEEEEECCCCCEEEECCCCEEEEECC
T ss_conf 9878828999999999976221-246426877558987750116898799845067898517852785414310276077
Q ss_pred HHHHHHHHHCCCCCC-------CCCCHHHHHHHHCCCEEEEEC---CCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 088999961599997-------600289999652584999611---7943899301789988660333568999999998
Q 002636 276 PVVNFLLANQNVREP-------HQIDWNKAKRVLKNLRINTNH---SNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDA 345 (898)
Q Consensus 276 ~l~d~l~~~~~~~~~-------~~~~~~~i~~~Lkgl~V~~~y---~~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~ 345 (898)
+|+|+|.+..+.++. ...++.+++++|+|++|.++| ++|+|+|.||++.++++.+|.++..++ ++
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g-----~~ 305 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESG-----QT 305 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSS-----CE
T ss_pred CHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCC-----CC
T ss_conf 0999999986345502203565778999999985793899830377886599953788998776787652789-----84
Q ss_pred EEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 14319899998439744579998548418999752003551577267322456999999999999307988999999999
Q 002636 346 IEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEA 425 (898)
Q Consensus 346 ~~iTv~dYf~~~Y~i~L~~~p~lPlv~~g~~~k~~ylP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~~i~~~ 425 (898)
.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|++||++.++|+++|+++||++++..|.+|.+.|.++
T Consensus 306 ~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~ 384 (861)
T 4f3t_A 306 VECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKL 384 (861)
T ss_dssp EEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHCCCCCCC-CCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 1688899998753952479-997638834888875256566894078445566898999999998754979999999999
Q ss_pred HHHCCCCCHHHHHCCCCEECCCEEEEEEEECCCCCEEECCCC--CCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC---
Q ss_conf 995169931566204906527403764477189924406772--248998856769950005543203999994871---
Q 002636 426 MRRNNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGE--DFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSAR--- 500 (898)
Q Consensus 426 ~~~~~~~~~~~l~~fGl~i~~~~~~v~grvL~pP~i~~g~~~--~~~~~~G~W~~~~~~f~~p~~i~~W~vi~~~~~--- 500 (898)
++.++++.+++|++|||+|+++|++|+||||+||+|.||++. ...|.+|+|++++++|++|+++++|++++++..
T Consensus 385 ~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~ 464 (861)
T 4f3t_A 385 MRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQC 464 (861)
T ss_dssp HHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTS
T ss_pred HHHHCCCCCHHHHHCCCEEECCEEEEEEEEECCCEEEECCCCCCCCCCCCCCEECCCCEECCCCCCCEEEEEEECCCCCC
T ss_conf 98716897568997797883875689779825864885687643337887851356988702754440599984575444
Q ss_pred --HHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHH
Q ss_conf --01999999999997613965479-940030331311374058999999999974999990999990699998645778
Q 002636 501 --CDIRSLCNNLIRCGEMKGMHINN-PHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPW 577 (898)
Q Consensus 501 --~~~~~f~~~L~~~~~~~G~~i~~-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~i 577 (898)
..+++|++.|.+.|+.+||.+.. |....... ..++++.+++.+++.. .++||||||+|+ + .+.|+.|
T Consensus 465 ~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~-------~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~~I 534 (861)
T 4f3t_A 465 TEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQ-------GADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYAEV 534 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECC-------SSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC-------CHHHHHHHHHHHHHHC-CCCCEEEEEECC-C-CCHHHHH
T ss_conf 5899999999999998507865479973777258-------4578999999998526-898389999589-8-4289999
Q ss_pred HHHHHHCCCCEEEEEECC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 997641049223665114---55635677989998740499653335333478887468928999998313999999998
Q 002636 578 KRKNLSEAGIVTQCIAPT---KVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLP 654 (898)
Q Consensus 578 K~~~~~~~gI~TQci~~~---~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~lp~~~~~~tmiiG~DV~H~~~~~~~~p 654 (898)
|++||++.||+||||+.+ +.++|++.||++|||+||||+||.+.+. ..|.+...+|||||+||+||++++...|
T Consensus 535 K~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~p 611 (861)
T 4f3t_A 535 KRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKP 611 (861)
T ss_dssp HHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCC
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCC---CCCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 9974306784228997212255567899999999988619833044665---4653468965899877214688877886
Q ss_pred EEEEEEEECCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH
Q ss_conf 18999961378975403689996168733510234778888358999999999998719999932999615756322146
Q 002636 655 SIAAVVSSRQWPSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ 734 (898)
Q Consensus 655 Si~a~VaS~d~~~~~~y~~~~~~Q~~~~e~i~~l~~p~~~~~~~~~~~e~l~~f~~~~~~~~P~~IiiyRDGvsegq~~~ 734 (898)
|++|+|||+|+ .+++|++.++.|.+++|+|++|. +|++++|..|++.+ +.+|++|||||||||||||++
T Consensus 612 Siaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l~---------~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~~~ 680 (861)
T 4f3t_A 612 SIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDLA---------AMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQFQQ 680 (861)
T ss_dssp EEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTHH---------HHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGHHH
T ss_pred EEEEEEEECCC-CCCEEEEEEEECCCCCCHHHHHH---------HHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHH
T ss_conf 59999998479-85658789997589955899899---------99999999999982-899845999926877688999
Q ss_pred ---------HHHHHCCCCCCCCEEEEEEEEECCCCEEECCCC------CCCCCCEEEEECCCCCCCCCCEEEECCCCCCC
Q ss_conf ---------897510268888609999960033320102799------99999910651455568866179401358766
Q 002636 735 ---------IEASKFLDEKWSPKFTVIVAQKNHHTKFFQSGR------PENVPPGTVVDKGVCHPRNNDFYLCAHAGMIG 799 (898)
Q Consensus 735 ---------~~a~~~l~~~y~P~it~Ivv~Krh~~Rff~~~~------~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~qG 799 (898)
++||+++..+|+|+||||||+||||+|||+.+. .+|++||||||++||+|.+|||||+||.++||
T Consensus 681 v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qG 760 (861)
T 4f3t_A 681 VLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQG 760 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCC
T ss_conf 99999999999999854477985799999725663562258753334468989840115750258877799988851413
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCC-CCCCCCCCC
Q ss_conf 5467247999569999988999999996400121368853454268999999998521133-56889877-778877889
Q 002636 800 TSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKF-DEMSDTSS-SHNAMTSAG 877 (898)
Q Consensus 800 TarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~svsiPaP~~yA~~~a~r~~~~l~~-~~~~~~~~-~~~~~~~~~ 877 (898)
|+|||||+||+||+++++|+||+|||+|||+|+|||++||+||||||||++|+|||+||.. .+.++++| .++++...+
T Consensus 761 TarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~ 840 (861)
T 4f3t_A 761 TSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRD 840 (861)
T ss_dssp CCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66676689983799999999999999986552104788877628899999999999751101356776654468876655
Q ss_pred CCCCCCCCCCCCCCCCCCEEC
Q ss_conf 999999821210178990109
Q 002636 878 SIPVPELPVLHERVCNSMFFC 898 (898)
Q Consensus 878 ~~~~~~~~~~~~~~~~~m~~~ 898 (898)
.........+|++++++|||+
T Consensus 841 ~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 841 HQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp STTHHHHTCCCHHHHTTTTTC
T ss_pred HHHHHHHHHHHHHHCCCCEEC
T ss_conf 355544534316551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1342.35 Aligned_cols=832 Identities=21% Similarity=0.295 Sum_probs=658.6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC-------------------CEEEEEEEEEECCCCC----------
Q ss_conf 99974576789999899868999259897860588-------------------1289988775317999----------
Q 002636 34 PAPKRLPMARRNHGTKGTPMTLLTNHFEVRMRQTE-------------------GYFCHYSVALFYEDGH---------- 84 (898)
Q Consensus 34 ~~~~~~~~~RP~~Gt~G~~i~L~tN~f~i~~~~~~-------------------~~~y~YdV~i~~~~~p---------- 84 (898)
+.....++.||||||.|++|.|+||||.+.+.... ..+|+|+|+|.|+..+
T Consensus 13 ~~~~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~ 92 (1046)
T 4f1n_A 13 THAIYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPP 92 (1046)
T ss_dssp CCCCCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC---------------
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 61135478999889899678999637998547775433221112334443335415899889975645665444566765
Q ss_pred CCCCCHHHHHHHHHHHHHH--HHHCCCCCEEEECCCCEEECCCCC---CCCEEEEEEEC-----CCCCCCCCCCCCCCCC
Q ss_conf 8888136799999999985--010169635771975033235556---76507999970-----5655545678999999
Q 002636 85 PVDGKGIGRKILDKVQETY--SHELEGKHFAYDGEKSLFTLGSFQ---RKKLEFTIVVE-----DLSSNRTARNDSPGGD 154 (898)
Q Consensus 85 ~~~~k~~~r~i~~~l~~~~--~~~~~g~~~vyDG~~~Lys~~~L~---~~~~~~~v~~~-----~~~~~~~~~~~~~~~~ 154 (898)
+..+++..++|+..|+++. ... .+..+||||+++|||..+|| .....|.|... +....+. .++++
T Consensus 93 ~~~~~~k~~~ii~~ll~e~~~~~~-~~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~---~~~~~- 167 (1046)
T 4f1n_A 93 QELSKPKKYELIEALLDEDEILYK-YRDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMGAP---SNKAS- 167 (1046)
T ss_dssp --CCHHHHHHHHHHHHHSCTTTGG-GTTSEEECSSSEEEESSCGGGSTTCTTCCC-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHH-CCCCEEECCCCCEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCC---CCCCC-
T ss_conf 322123799999999972613564-2886046472216878767765357776698655334466776654---43322-
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHH--H---HHHHHHHHHHHHCCCCCC-CC-EEC-CC
Q ss_conf 9999886434568999965999999820017588999971798600--5---899999999984222224-84-101-43
Q 002636 155 GSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEH--F---QEAMRVLDIILRQNAANQ-GC-LLV-RQ 226 (898)
Q Consensus 155 ~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~l~~l~~~l~g~~~~~--~---~~~lq~lniilr~~~~~~-~~-~~~-g~ 226 (898)
....|.. ..+.++|+|+|++++++++.+|.+|++|...+. . .+++++|+++|++.+.+. +. ..+ ++
T Consensus 168 --~~~~~~~----~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~n 241 (1046)
T 4f1n_A 168 --LQKKIDP----ELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGN 241 (1046)
T ss_dssp ----------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTT
T ss_pred --CCCCCCC----CCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf --2345555----5668459999987105179999999728985544333416789999999755655358964875784
Q ss_pred CCCCCCC-CCCCCCCCCEEEEECCEEEEEECCCEEEEEEECCEEEEECC-----------------CHHHHHHHHHCC--
Q ss_conf 2238999-87324899677630536899862880368752211113216-----------------508899996159--
Q 002636 227 SFFHNNP-RNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKP-----------------GPVVNFLLANQN-- 286 (898)
Q Consensus 227 ~ff~~~~-~~~~~l~~g~e~w~G~~~Sir~~~~gl~LniD~s~~~F~~~-----------------~~l~d~l~~~~~-- 286 (898)
+||..+. ....++++|+|+|+|||+|||++.++|+||+|+++++|++. ++|+|+|.++.+
T Consensus 242 kFF~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~ 321 (1046)
T 4f1n_A 242 KFFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQS 321 (1046)
T ss_dssp EEEECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 30467987751037881799976766678518940899725511178466667653100013568860999999986333
Q ss_pred ------------CCCCCCCCH-------HHHHHHHCCCEEEEECCC---------------CEEEEEECCCCCCCCCEEE
Q ss_conf ------------999760028-------999965258499961179---------------4389930178998866033
Q 002636 287 ------------VREPHQIDW-------NKAKRVLKNLRINTNHSN---------------TEYKITGLSDLPCNQQTFS 332 (898)
Q Consensus 287 ------------~~~~~~~~~-------~~i~~~Lkgl~V~~~y~~---------------r~~~I~~i~~~~a~~~~F~ 332 (898)
.+.+...++ .+++++|+|++|.++|.+ +.++|.||+..+|.+.+|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~ 401 (1046)
T 4f1n_A 322 KAIRDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFN 401 (1046)
T ss_dssp HHHHSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC--
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEE
T ss_conf 33222222322357875566544567889999984897899986675445566524434666469863468997731996
Q ss_pred CCCCC-CCCC----CCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf 35689-9999----999814319899998439744579998548418999752003551577267322456999999999
Q 002636 333 LKQKS-GHNG----DSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASL 407 (898)
Q Consensus 333 ~~~~~-~~~g----~~~~~~iTv~dYf~~~Y~i~L~~~p~lPlv~~g~~~k~~ylP~Elc~i~~~Q~~~~~l~~~q~~~l 407 (898)
+++.+ +.+| ++++.+|||+|||+++|||+|+| |+||||++|+. .+|||||||.|++||+++++|++ +++|
T Consensus 402 ~~~~~~~~~~~~~~g~~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~M 476 (1046)
T 4f1n_A 402 VLESSLKKNSAPKPNEKPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTY 476 (1046)
T ss_dssp ---------------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCC-CCCCEEEECCC--CCCCCCCEEEECCCCCCCCCCCC--HHHH
T ss_conf 1687544456666776752788999999873940479-99877997897--74213104796689624512351--7899
Q ss_pred HHHHHCCHHHHHHHHHHHHHH-----CCCCCHHHHHCCCCEECCCEEEEEEEECCCCCEEECCCCC----------CCCC
Q ss_conf 999307988999999999995-----1699315662049065274037644771899244067722----------4899
Q 002636 408 VEKSRQKPQERMGVLTEAMRR-----NNYGADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGED----------FFPR 472 (898)
Q Consensus 408 ik~~~~~P~~R~~~i~~~~~~-----~~~~~~~~l~~fGl~i~~~~~~v~grvL~pP~i~~g~~~~----------~~~~ 472 (898)
|++++.+|.+|++.|.+.... +..+.+++|++|| +|+.+|++|+||||+||.|.||++.. ..+.
T Consensus 477 IKfAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~ 555 (1046)
T 4f1n_A 477 IDFSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEES 555 (1046)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGG
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC-CCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 998756949999999999887541024666557678628-7568503677887489757616875455556543445766
Q ss_pred CCCCCCCCCEEECCCC-CCEEEEEEE-CCC--------HHHHHHHHHHHHHHHHCCCCCCCCC-CEEEC-----------
Q ss_conf 8856769950005543-203999994-871--------0199999999999761396547994-00303-----------
Q 002636 473 GGRWNFNNKQLVEPMQ-IKWWAIVNF-SAR--------CDIRSLCNNLIRCGEMKGMHINNPH-EVFEE----------- 530 (898)
Q Consensus 473 ~G~W~~~~~~f~~p~~-i~~W~vi~~-~~~--------~~~~~f~~~L~~~~~~~G~~i~~P~-~~~~~----------- 530 (898)
+|.|||++++|++|+. +.+|.++++ ... .+++.|++.|.+.++..||.+..|. .+...
T Consensus 556 ~G~Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~ 635 (1046)
T 4f1n_A 556 KGNWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQG 635 (1046)
T ss_dssp TTBCCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC----
T ss_pred CCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78526888877137866640799997278766654238999999999999998669854787787412134554311123
Q ss_pred -CHHHHCC------------------CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf -3131137------------------405899999999997499999099999069999864577899764104922366
Q 002636 531 -SNQFRRE------------------AAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQC 591 (898)
Q Consensus 531 -~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~iK~~~~~~~gI~TQc 591 (898)
..+.+.. ......+..+..+.++. ..++|||||||++++.++|+.||++||++.||+|||
T Consensus 636 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQc 714 (1046)
T 4f1n_A 636 GGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSC 714 (1046)
T ss_dssp ------------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 3433323333333333333444432111231799999999745-899789999668887168999999761357814489
Q ss_pred EECC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEEEEECCCCCCCCCCEEEEEEEECC
Q ss_conf 5114---556356779899987404996533353334788874----689289999983139999999981899996137
Q 002636 592 IAPT---KVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLV----SKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQ 664 (898)
Q Consensus 592 i~~~---~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~lp~~----~~~~tmiiG~DV~H~~~~~~~~pSi~a~VaS~d 664 (898)
|+.+ +.+.||++||+||||+||||+||.++... ++.+ ...+|||||+||+|++++. .+||+|+|||+|
T Consensus 715 v~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~~---~~~l~~~~~~~ptMiiG~DVtH~p~~~--~~SiaavVaS~d 789 (1046)
T 4f1n_A 715 VVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIEN---NKLLIDKESNLPILVLGSDVTHYPEKD--QNSIASLVGSYD 789 (1046)
T ss_dssp EEHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTTG---GGGGEETTTTEECEEEEEEEECCSSTT--CEEEEEEEECCS
T ss_pred EEHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCC---CCCCCCCCCCCCEEEEEEEEECCCCCC--CCEEEEEEEEEC
T ss_conf 842351354278999999999986098511436654---432344456773499853111179899--872669999987
Q ss_pred CCCCCEEEEEEEECCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH---------
Q ss_conf 8975403689996168-733510234778888358999999999998719999932999615756322146---------
Q 002636 665 WPSISRYRASVRTQSP-KVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCTFLQ--------- 734 (898)
Q Consensus 665 ~~~~~~y~~~~~~Q~~-~~e~i~~l~~p~~~~~~~~~~~e~l~~f~~~~~~~~P~~IiiyRDGvsegq~~~--------- 734 (898)
+ .+++|++.+++|.+ ++|+|++|. +|++++|..|++.+++.+|++|||||||||||||++
T Consensus 790 ~-~~t~y~s~~~~Q~~~~~Eii~~L~---------~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~I 859 (1046)
T 4f1n_A 790 D-KFTQFPGDYMLQDGPGEEIITNVG---------SLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSI 859 (1046)
T ss_dssp S-SCCCCCEEEEEEEEETCCSCTTGG---------GGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHH
T ss_pred C-CCCEEEEEEEEECCCCCCHHHHHH---------HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 9-858583599984588724898899---------999999999998637999857999806876577899999999999
Q ss_pred HHHHHCCC------CCCCCEEEEEEEEECCCCEEECCCC--------------CCCCCCEEEEECCCCCCCCCCEEEECC
Q ss_conf 89751026------8888609999960033320102799--------------999999106514555688661794013
Q 002636 735 IEASKFLD------EKWSPKFTVIVAQKNHHTKFFQSGR--------------PENVPPGTVVDKGVCHPRNNDFYLCAH 794 (898)
Q Consensus 735 ~~a~~~l~------~~y~P~it~Ivv~Krh~~Rff~~~~--------------~~N~~pGTvVD~~i~~p~~~dFyL~sh 794 (898)
++||.++. .+|+|+||||||+||||+|||+.+. .+|++||||||++||+|.+|||||+||
T Consensus 860 k~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh 939 (1046)
T 4f1n_A 860 KESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSH 939 (1046)
T ss_dssp HHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSBEEEEEECS
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECC
T ss_conf 99999854300345577987799999657642351145554333344323456679999728646645667412899703
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCC-CCCCCCCCC
Q ss_conf 58766546724799956999998899999999640012136885345426899999999852113--356-889877778
Q 002636 795 AGMIGTSRPTHYHVLHDEIGFSADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIK--FDE-MSDTSSSHN 871 (898)
Q Consensus 795 ~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~svsiPaP~~yA~~~a~r~~~~l~--~~~-~~~~~~~~~ 871 (898)
.++|||+|||||+|||||+++++|+||+|||+|||+|+|||++|||||||||||++|+|||+||+ |+. .++++++++
T Consensus 940 ~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla~R~r~~~~~~~~~~~~~~~~~~~ 1019 (1046)
T 4f1n_A 940 QALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMAQAPKEKG 1019 (1046)
T ss_dssp CCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHHHHHHHHHHHTSHHHHHCC-----
T ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 34777665737999967999998999999999865533517886255789999999999999998641202222455667
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 877889999999821210178990109
Q 002636 872 AMTSAGSIPVPELPVLHERVCNSMFFC 898 (898)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~m~~~ 898 (898)
+.++.....++.++.+|++++++||||
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 1020 SKDQPTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp -----CCCHHHHSCCCCGGGTTSCTTC
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCEEEC
T ss_conf 766555676654511335540152359
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=813.94 Aligned_cols=652 Identities=15% Similarity=0.171 Sum_probs=482.9
Q ss_pred EEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCEEEEE
Q ss_conf 92598978605881289988775317999888813679999999998501016963577197503323555676507999
Q 002636 56 LTNHFEVRMRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRKKLEFTI 135 (898)
Q Consensus 56 ~tN~f~i~~~~~~~~~y~YdV~i~~~~~p~~~~k~~~r~i~~~l~~~~~~~~~g~~~vyDG~~~Lys~~~L~~~~~~~~v 135 (898)
..|.|+|+..+.+..+- | +.| ..++.+.++ -++-|+.+-. .+...|-...-.|..++...+.+-..
T Consensus 6 ~~~~~~~~~~~~~~~~~---~-~~~--~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~- 71 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFT---V-FKP--THEIQKEKL-NKVRWRVFLQ------TGLPTFRREDEFWCAGKVEKDTLYLT- 71 (706)
T ss_dssp EESEEEEEECCSSCEEB---C-CEE--SSCCCHHHH-HHHHHHHHHH------HCSCEEEETTEEEESSCCTTCCCEEE-
T ss_pred HHHHHEEEECCCCCEEE---E-ECC--HHHHHHHHH-HHEEEEEEEE------CCCCCCCCCCCCEECCCCCCCEEEEE-
T ss_conf 53544255136773367---6-345--078878764-1201476510------17865201531034352013248998-
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 97056555456789999999999886434568999965999999820017588999971798600589999999998422
Q 002636 136 VVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVLDIILRQN 215 (898)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~lq~lniilr~~ 215 (898)
.. ++. .|+|++++++... | .....+++|+++.+++..
T Consensus 72 -~~-------------------------------~~~--~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~ 108 (706)
T 1yvu_A 72 -LS-------------------------------NGE--IVELKRVGEEEFR-------G--FQNERECQELFRDFLTKT 108 (706)
T ss_dssp -EC-------------------------------SSS--CEEEEECCCEECC-------C--CSCHHHHHHHHHHHHHHT
T ss_pred -CC-------------------------------CCC--EEEEEEEEEEECC-------C--CCCCHHHHHHHHHHHHHC
T ss_conf -17-------------------------------997--8999999886156-------7--899989999999999975
Q ss_pred CCCCCCEECCCCCCCCCCCCCCC-CCCCEEEEECCEEEEEECC-CEEEEEEECCEEEEECCCHHHHHHHHHCCCCCCCCC
Q ss_conf 22248410143223899987324-8996776305368998628-803687522111132165088999961599997600
Q 002636 216 AANQGCLLVRQSFFHNNPRNFAD-LGGGVMGCRGFHSSFRATQ-SGLSLNMDVSTTMIVKPGPVVNFLLANQNVREPHQI 293 (898)
Q Consensus 216 ~~~~~~~~~g~~ff~~~~~~~~~-l~~g~e~w~G~~~Sir~~~-~gl~LniD~s~~~F~~~~~l~d~l~~~~~~~~~~~~ 293 (898)
.+.+.++||.||++......+ -..++|+|+||.+||+..+ ++++||+|++|+ |++..||+|+|.+ ... .+
T Consensus 109 --~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~-~~--- 180 (706)
T 1yvu_A 109 --KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDF-NP--- 180 (706)
T ss_dssp --CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCC-CC---
T ss_pred --CCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHH-HHH-CC---
T ss_conf --774755172445833562056778767981686889885267875999973404-5566539999997-230-46---
Q ss_pred CHHHHHHHHCCCEEEEECCCCEE--EEEEC-CCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHCCCC--------C
Q ss_conf 28999965258499961179438--99301-7899886603335689999999981431989999843974--------4
Q 002636 294 DWNKAKRVLKNLRINTNHSNTEY--KITGL-SDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIK--------L 362 (898)
Q Consensus 294 ~~~~i~~~Lkgl~V~~~y~~r~~--~I~~i-~~~~a~~~~F~~~~~~~~~g~~~~~~iTv~dYf~~~Y~i~--------L 362 (898)
..+..+|+|++| +|+++ +|...+..+|. ++ .++| ||+++|++. .
T Consensus 181 -----------~~~~~~y~n~ty~~riddi~~~~~~P~~~f~-~g----------~~iS---Yyk~~~~~~q~ll~~r~~ 235 (706)
T 1yvu_A 181 -----------KRIRVKPIGIDFVGRVQDVFKAKEKGEEFFR-LC----------MERS---THKSSKKAWEELLKNREL 235 (706)
T ss_dssp -----------TTCEEEETTCCCCEEEEEEEESTTSCHHHHH-HH----------HHTC---SSHHHHHHHHHHHHCHHH
T ss_pred -----------HHHHHHCCCCEECCCCCCCCCCCCCCCEEEC-CC----------CCCC---EEECCCCCCHHHHHCCCC
T ss_conf -----------5688643255633365740046889513842-89----------9755---585146754144430244
Q ss_pred CCCCCCCEEECCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 5799985484189997-520035515772673224569999999999993079889999999999951699315662049
Q 002636 363 EYSADFPCINVGKPKR-ASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGADQMLRSFG 441 (898)
Q Consensus 363 ~~~p~lPlv~~g~~~k-~~ylP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~~i~~~~~~~~~~~~~~l~~fG 441 (898)
+. +.+|++....... .++++| ||.+. +|+++|+++|+++++.+|++|++.|+++++.. +++|+.||
T Consensus 236 ~~-~~~~~~v~~~~~~p~~lL~p-lc~~t-------~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fG 302 (706)
T 1yvu_A 236 RE-KAFLVVLEKGYTYPATILKP-VLTYE-------NLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYG 302 (706)
T ss_dssp HH-HCEEEEETTSCEEEGGGEEE-CCCCC-------------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTT
T ss_pred CC-CCCEEEECCCCCCCCEEECC-CCCCC-------CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHCC
T ss_conf 56-77248842688778644300-12137-------99999999999998259999999999999998----99999769
Q ss_pred CEECCCEEEEEEEECCCCCEEECCCC--CCC-CCCCCCCCCCCEEECCCCCCE---EEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 06527403764477189924406772--248-998856769950005543203---999994871019999999999976
Q 002636 442 ISIGTQFTQVEGRTLPAPKLKVGNGE--DFF-PRGGRWNFNNKQLVEPMQIKW---WAIVNFSARCDIRSLCNNLIRCGE 515 (898)
Q Consensus 442 l~i~~~~~~v~grvL~pP~i~~g~~~--~~~-~~~G~W~~~~~~f~~p~~i~~---W~vi~~~~~~~~~~f~~~L~~~~~ 515 (898)
|+|+++|+.|+||||++|+|.++.+. ... ...|.|++.+ +|+.++.+++ |.+++..+...+++|++.|.+.|+
T Consensus 303 i~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~lW~~i~~~~~~~~~~f~~~L~~~~~ 381 (706)
T 1yvu_A 303 WYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKFLELCR-PFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLK 381 (706)
T ss_dssp EEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHHHHHCC-CCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHH
T ss_pred CEECCCEEECCCEECCCCEEECCCCCCCEECCCCCCCCCCCC-CEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 888886422136873895066478974302368754300037-4111432564338999816616899999999999998
Q ss_pred HCCCCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCC-------CCCCHHHHHHHHHHCCC
Q ss_conf 139654799400303313113740589999999999749--999909999906999-------98645778997641049
Q 002636 516 MKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKL--PGPPQLLLCILPERK-------NSDIYGPWKRKNLSEAG 586 (898)
Q Consensus 516 ~~G~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lvlvilp~~~-------~~~~Y~~iK~~~~~~~g 586 (898)
.+||.++.|...... .+.++.+++.+.... ..++++++||+|+ + +.+.|+.||++|+ +.|
T Consensus 382 ~~G~~i~~p~~~~~~---------~~~~~~~~~~l~~~~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~~-~~G 450 (706)
T 1yvu_A 382 NKGIKLKIKGKSLIL---------AQTREEAKEKLIPVINKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKRELL-KKM 450 (706)
T ss_dssp TTTCEEEEEEEEEEE---------CSSTTHHHHHHHHHHTTTSSCSEEEEEEC-----------CHHHHHHHHHHH-HTT
T ss_pred HCCCEECCCCCCCCC---------CHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCCCCCCCCCHHHHHHHHHH-CCC
T ss_conf 749620687422334---------001999999999875005899589999777-444455567547999999985-289
Q ss_pred CEEEEEECCCC----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 22366511455----63567798999874049965333533347888746892899999831399999999818999961
Q 002636 587 IVTQCIAPTKV----NDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSS 662 (898)
Q Consensus 587 I~TQci~~~~~----~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~lp~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~VaS 662 (898)
|+||||..+++ +.|++.||++|||+||||+||.++. + ...+|||||+||+|++.++ ..||++|+|+|
T Consensus 451 I~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas 521 (706)
T 1yvu_A 451 IPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFTKI 521 (706)
T ss_dssp CCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEEEE
T ss_pred CCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEECC------C--CCCCEEEEEEEEECCCCCC-CCCEEEEEEEE
T ss_conf 8549980102166530789999999999984986156025------8--8885599999886168788-88569999999
Q ss_pred CCC-CCCCEEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-HHH-HHHHH
Q ss_conf 378-975403689996168733510234778888358999999999998719999932999615756322-146-89751
Q 002636 663 RQW-PSISRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNTLSCT-FLQ-IEASK 739 (898)
Q Consensus 663 ~d~-~~~~~y~~~~~~Q~~~~e~i~~l~~p~~~~~~~~~~~e~l~~f~~~~~~~~P~~IiiyRDGvsegq-~~~-~~a~~ 739 (898)
+|. ..+++|.+....|. ++|++++ ++..+|..|. ++++.+|++||||||||||.+ +.. ++||+
T Consensus 522 ~d~~g~~~~~~~~~~~q~-~~ei~~~------------l~~~~l~~~~-~~~~~~P~rIIiyRDGVse~~El~~Ik~A~~ 587 (706)
T 1yvu_A 522 FNSKGELVRYYLTSYPAF-GEKLTEK------------AIGDVFSLLE-KLGFKKGSKIVVHRDGRLYRDEVAAFKKYGE 587 (706)
T ss_dssp ECTTSCEEEEEEEEECSC-TTHHHHH------------HHHHHHHHHH-HTTCCTTCEEEEEESSCCCHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEEECCCC-CCHHHHH------------HHHHHHHHHH-HHCCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 858998899998733666-4269999------------9999999999-8649998379999688885899999999999
Q ss_pred CCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCC-CCCCCCCCEEEEEECCCCCCHH
Q ss_conf 026888860999996003332010279999999910651455568866179401358-7665467247999569999988
Q 002636 740 FLDEKWSPKFTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHAG-MIGTSRPTHYHVLHDEIGFSAD 818 (898)
Q Consensus 740 ~l~~~y~P~it~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~~-~qGTarPt~Y~Vl~d~~~~~~d 818 (898)
+ |.|++|||+|+||||+|||+.+ ||+||||||. ..+||||++|++ .|||+||+||+|+++|. ++|
T Consensus 588 ~----~~pkit~IvV~Krh~tRfF~~~---np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d 653 (706)
T 1yvu_A 588 L----YGYSLELLEIIKRNNPRFFSNE---KFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVE 653 (706)
T ss_dssp H----HTCEEEEEEEECSSCCCEECSC---SCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHH
T ss_pred H----CCCCEEEEEEEECCCEEEECCC---CCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECCC--CHH
T ss_conf 7----2994799999704671587889---9997389972-----797699994477667887887999991899--999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999640012136885345426899999999852113
Q 002636 819 DLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIK 859 (898)
Q Consensus 819 ~lq~lt~~Lc~~y~~~~~svsiPaP~~yA~~~a~r~~~~l~ 859 (898)
+||++||+|||+|+||+++||+||||||||++|+|++.+++
T Consensus 654 ~Lq~lty~Lc~ly~r~t~svslPaPiyYAhllA~r~~~~~~ 694 (706)
T 1yvu_A 654 VLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIE 694 (706)
T ss_dssp HHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999898601648996047589999999999974278
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=774.97 Aligned_cols=660 Identities=12% Similarity=0.092 Sum_probs=489.9
Q ss_pred EEEEEEEEEEEEEE-CCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC--EEECCCCCC
Q ss_conf 68999259897860-588128998877531799988881367999999999850101696357719750--332355567
Q 002636 52 PMTLLTNHFEVRMR-QTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKS--LFTLGSFQR 128 (898)
Q Consensus 52 ~i~L~tN~f~i~~~-~~~~~~y~YdV~i~~~~~p~~~~k~~~r~i~~~l~~~~~~~~~g~~~vyDG~~~--Lys~~~L~~ 128 (898)
+..|.+|||++... .|+ .+|+|+|++ +|+++.+ .+..++..+.+. .| .++|||. . ||++++|+.
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~-----~g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE-----NV-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH-----TT-EEEEETT-TTEEEESSCCCC
T ss_pred CEEEEEEEEEEECCCCCC-EEEEEEEEC----CCHHHHH-HHHHHHHHHHHH-----CC-CEEECCC-CEEEECCCEECC
T ss_conf 069994068873246887-059998623----8758889-999899987865-----37-1896475-203222532146
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 65079999705655545678999999999988643456899996599999982001758899997179860058999999
Q 002636 129 KKLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAMRVL 208 (898)
Q Consensus 129 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~lq~l 208 (898)
+ +..+.|+++.++++. +|++
T Consensus 70 ~-----------------------------------------~~~~~~~~~~~~~~~-------------------~~~~ 89 (771)
T 1u04_A 70 E-----------------------------------------GEFIPEGEISFSELR-------------------NDYQ 89 (771)
T ss_dssp S-----------------------------------------SCCEEEEEECGGGSC-------------------HHHH
T ss_pred C-----------------------------------------CCEEEEEEEECCEEC-------------------HHHH
T ss_conf 8-----------------------------------------973789999904402-------------------9999
Q ss_pred HHHHHCCCCCCC-----CEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEECCEEEEECCCHHHHHHHH
Q ss_conf 999842222248-----410143223899987324899677630536899862880368752211113216508899996
Q 002636 209 DIILRQNAANQG-----CLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQSGLSLNMDVSTTMIVKPGPVVNFLLA 283 (898)
Q Consensus 209 niilr~~~~~~~-----~~~~g~~ff~~~~~~~~~l~~g~e~w~G~~~Sir~~~~gl~LniD~s~~~F~~~~~l~d~l~~ 283 (898)
|+++|..+..++ +..+||+||++. .+ +.+++|+|+.+||+..+++++|++|++|++ .+..|++|+|.+
T Consensus 90 n~i~r~~l~~~~~~~~~l~~~~r~~~~~~-----~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~ 162 (771)
T 1u04_A 90 SKLVLRLLKENGIGEYELSKLLRKFRKPK-----TF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNK 162 (771)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHTTTSCCE-----EE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCC-----CC-CCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHH
T ss_conf 99999999874620588999766207983-----34-662799873466885378438999866567-555679999999
Q ss_pred HCCCCCCCCCCHHHHHHHHCCCEEEEE--------C--CCCEEEEEECCCCCCCCC--EE---ECCC-CCCCCCCCCCEE
Q ss_conf 159999760028999965258499961--------1--794389930178998866--03---3356-899999999814
Q 002636 284 NQNVREPHQIDWNKAKRVLKNLRINTN--------H--SNTEYKITGLSDLPCNQQ--TF---SLKQ-KSGHNGDSDAIE 347 (898)
Q Consensus 284 ~~~~~~~~~~~~~~i~~~Lkgl~V~~~--------y--~~r~~~I~~i~~~~a~~~--~F---~~~~-~~~~~g~~~~~~ 347 (898)
.. + ..++..+...|..|.+. | |+++|++++ .++..+.. +| ..++ .+ +
T Consensus 163 ~~-----~--~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~---------~ 225 (771)
T 1u04_A 163 DP-----K--ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYWN---------T 225 (771)
T ss_dssp CH-----H--HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHCC---------S
T ss_pred HH-----H--HHHHHHHHCCCCEEEEECCCCCEEEEECCCCEEECCC-CCCCCCCCHHHEECEEECCCCC---------C
T ss_conf 99-----9--9998887356737853113444268604662441588-5123789854401302137788---------7
Q ss_pred EEHHHHHHHHCCCCCCCCCCCCEEECCC-------CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH
Q ss_conf 3198999984397445799985484189-------997520035515772673224569999999999993079889999
Q 002636 348 ITVYEYFVNNRHIKLEYSADFPCINVGK-------PKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMG 420 (898)
Q Consensus 348 iTv~dYf~~~Y~i~L~~~p~lPlv~~g~-------~~k~~ylP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~ 420 (898)
+++.+||.++|++ ++ .+||++.... .++.+||+||||.++|. ..+++.+.+++|..+++..|++|.+
T Consensus 226 ~~~~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~~ 299 (771)
T 1u04_A 226 PEAKLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERKE 299 (771)
T ss_dssp HHHHHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHCCC--CC-CCCCEEEECCHHHCCCCCCCEEEECHHHHHHCCC---HHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 4116878876486--76-7887698514432467889603642476533674---3566689999999987779899999
Q ss_pred HHHHHHHHC-----CC--CCHHHHHCCCCEECCCEEEEEEEECCCCCEEECCCCCCCCCCCCCC--CCCCEEECCCC---
Q ss_conf 999999951-----69--9315662049065274037644771899244067722489988567--69950005543---
Q 002636 421 VLTEAMRRN-----NY--GADQMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWN--FNNKQLVEPMQ--- 488 (898)
Q Consensus 421 ~i~~~~~~~-----~~--~~~~~l~~fGl~i~~~~~~v~grvL~pP~i~~g~~~~~~~~~G~W~--~~~~~f~~p~~--- 488 (898)
.+.++++++ +- +..+.|+.|+ .++.. +.+.++++.+-.+.+++ ......++|. +++.+++.+..
T Consensus 300 ~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p~ 375 (771)
T 1u04_A 300 LLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVPE 375 (771)
T ss_dssp HHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-CCCCC-CCCCCCCCCCCCEEECC--CCCCCCCCCCHHHCCCCCEECCCCHH
T ss_conf 9999999861544307988999975554-11767-50025456645326327--67776677605537785110465426
Q ss_pred -CC------EEEEEEECCCHHHHHHH---------HHHHHHHHHCCCC---------CCCCCC------EEECCHHHHCC
Q ss_conf -20------39999948710199999---------9999997613965---------479940------03033131137
Q 002636 489 -IK------WWAIVNFSARCDIRSLC---------NNLIRCGEMKGMH---------INNPHE------VFEESNQFRRE 537 (898)
Q Consensus 489 -i~------~W~vi~~~~~~~~~~f~---------~~L~~~~~~~G~~---------i~~P~~------~~~~~~~~~~~ 537 (898)
++ .|++++......+++|+ +.|.++++.+|+. ++.|.. .....+ .
T Consensus 376 ~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~d----l 451 (771)
T 1u04_A 376 KFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITED----L 451 (771)
T ss_dssp HHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEEC----T
T ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCC----C
T ss_conf 550435553599995771688998888876667789999875322310110356642257873334675143156----5
Q ss_pred CHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC------------HHHHHH
Q ss_conf 40589999999999749-99990999990699998645778997641049223665114556------------356779
Q 002636 538 AAPIRVERMFEIIKKKL-PGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTKVN------------DQYITN 604 (898)
Q Consensus 538 ~~~~~~~~~~~~~~~~~-~~~~~lvlvilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~------------~q~~~n 604 (898)
..++.++.+++.+.+.. +..++|++|+++..++.+.|+.||+.| .+.||+||||..+++. .+++.|
T Consensus 452 ~~~~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~N 530 (771)
T 1u04_A 452 NSDKGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHN 530 (771)
T ss_dssp TSHHHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 534779999999997515789878999975898866689999998-5489663998435006765443323132899999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCEE
Q ss_conf 89998740499653335333478887468928999998313999999998189999613789754036899961687335
Q 002636 605 VLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSISRYRASVRTQSPKVEM 684 (898)
Q Consensus 605 i~lKiN~KlGG~n~~~~~~~~~~lp~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~VaS~d~~~~~~y~~~~~~Q~~~~e~ 684 (898)
|++|||+||||+||.++. |. .++||||+||+|+.+++ ..++++|.|+|.|+ ..++|.+....|.++++
T Consensus 531 IalqIn~KLGG~pW~L~~------p~---~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~E~- 598 (771)
T 1u04_A 531 LLFQVLSKLGVKYYVLDY------RF---NYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRGES- 598 (771)
T ss_dssp HHHHHHHHTTCBCCEESC------CC---SSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSSSS-
T ss_pred HHHHHHHHHCCCCEEECC------CC---CCEEEEEEEEECCCCCC-CCEEEEEEEECCCC-CEEEEEEEEEECCCCCE-
T ss_conf 999999985983326068------99---98799999987479899-74699999977999-78999888730377637-
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCHHH-HHHHHCCCCCCCCEEEEEEEEECCCCEE
Q ss_conf 1023477888835899999999999871999993299961575-6322146-8975102688886099999600333201
Q 002636 685 IANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNT-LSCTFLQ-IEASKFLDEKWSPKFTVIVAQKNHHTKF 762 (898)
Q Consensus 685 i~~l~~p~~~~~~~~~~~e~l~~f~~~~~~~~P~~IiiyRDGv-segq~~~-~~a~~~l~~~y~P~it~Ivv~Krh~~Rf 762 (898)
++ + ..+++++|.+|++.+++.+|+||||||||+ .+.++.+ ++||.+ +.|+++||+|+||||+||
T Consensus 599 i~-l---------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~v~~~El~~i~ea~~~----~~p~itfIvV~Krh~tRf 664 (771)
T 1u04_A 599 VD-M---------NEFFKEMVDKFKEFNIKLDNKKILLLRDGRITNNEEEGLKYISEM----FDIEVVTMDVIKNHPVRA 664 (771)
T ss_dssp CC-H---------HHHHHHHHHHHHHTTCCCTTCEEEEECSBCCCHHHHHHHHHHHHH----HTCEEEEEEEESCCCCCB
T ss_pred EC-H---------HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH----CCCCEEEEEEEECCCEEE
T ss_conf 73-9---------999999999999970799997799991888878999999999985----599889999994575156
Q ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCEEEECCC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHHCCCCC
Q ss_conf 027999999991065145556886617940135--87665467247--9995699999----889999999964001213
Q 002636 763 FQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHA--GMIGTSRPTHY--HVLHDEIGFS----ADDLQELVHSLSYVYQRS 834 (898)
Q Consensus 763 f~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~--~~qGTarPt~Y--~Vl~d~~~~~----~d~lq~lt~~Lc~~y~~~ 834 (898)
|. |++|||||| . ||||+||. +.|||++|+|| +|++|+++++ +|+||.+||+|||+|+||
T Consensus 665 F~-----~~~pGTVV~-------~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~ 731 (771)
T 1u04_A 665 FA-----NMKMYFNLG-------G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGS 731 (771)
T ss_dssp SS-----CSCEEEEET-------T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTC
T ss_pred EC-----CCCCEEEEE-------C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 46-----999804996-------8-8899834545888888878999788752788787778999999999865501457
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 68-85345426899999999852113356
Q 002636 835 TT-AVSVVTPICYAHLAAAQMSQFIKFDE 862 (898)
Q Consensus 835 ~~-svsiPaP~~yA~~~a~r~~~~l~~~~ 862 (898)
++ +||+||||||||++|+++++++++++
T Consensus 732 ~~~svrvPAP~~YAhklA~lvgq~~~~~~ 760 (771)
T 1u04_A 732 ISADMRLPAPVHYAHKFANAIRNEWKIKE 760 (771)
T ss_dssp SSCCCCSCHHHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 99996478127999999999976624576
No 5
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=761.66 Aligned_cols=395 Identities=29% Similarity=0.437 Sum_probs=328.6
Q ss_pred CCCCEEEC-CCCCCEEEEEEECC--C-HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 69950005-54320399999487--1-01999999999997613965479940030331311374058999999999974
Q 002636 478 FNNKQLVE-PMQIKWWAIVNFSA--R-CDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKK 553 (898)
Q Consensus 478 ~~~~~f~~-p~~i~~W~vi~~~~--~-~~~~~f~~~L~~~~~~~G~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (898)
+++++|++ ++++++|+++++.. + ..+++|++.|.+.++.+||.++.|........ +.+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECC---CCCHHHHH--HHHHHHCC
T ss_conf 98888626997277799999127778799999999999999876977179987641037---78658887--99875045
Q ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999909999906999986457789976410492236651145---5635--6779899987404996533353334788
Q 002636 554 LPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTK---VNDQ--YITNVLLKINAKLGGMNSLLTLEHSRSI 628 (898)
Q Consensus 554 ~~~~~~lvlvilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~---~~~q--~~~ni~lKiN~KlGG~n~~~~~~~~~~l 628 (898)
.+++|+|||+|+ ++.+.|+.||++||++.||+||||+.++ .++| ++.||++|||+||||+||.+++ .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCCEEEEEECC-CCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898389999788-98348999999870156854189726672476628999999999999984992402366----64
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 8746892899999831399---99--999981899996137897540368999616-87335102347788883589999
Q 002636 629 PLVSKPVTMILGMDVSHGS---PG--RSDLPSIAAVVSSRQWPSISRYRASVRTQS-PKVEMIANLFKPGSETEDYGIIR 702 (898)
Q Consensus 629 p~~~~~~tmiiG~DV~H~~---~~--~~~~pSi~a~VaS~d~~~~~~y~~~~~~Q~-~~~e~i~~l~~p~~~~~~~~~~~ 702 (898)
|++.+.+|||||+||+||+ +| ....||++|+|||+|. ..++|.+.++.|. +++|+|++|. +|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~---------~~~~ 219 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFT---------DKFK 219 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHH---------HHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCHHHHHHHH---------HHHH
T ss_conf 545778779998887525655677767899979999873499-967440278986776444899999---------9999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEEECCCCCCCHHH---------HHHHHCCCCCC-CCEEEEEEEEECCCCEEECCCC---
Q ss_conf 99999998--719999932999615756322146---------89751026888-8609999960033320102799---
Q 002636 703 ELFVDFYS--TSGKRKPENIIIFRLNTLSCTFLQ---------IEASKFLDEKW-SPKFTVIVAQKNHHTKFFQSGR--- 767 (898)
Q Consensus 703 e~l~~f~~--~~~~~~P~~IiiyRDGvsegq~~~---------~~a~~~l~~~y-~P~it~Ivv~Krh~~Rff~~~~--- 767 (898)
++|..|++ .+++.+|++|||||||||||||.+ ++||+++..+| .|+||||||+||||+|||+.+.
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~ 299 (437)
T 2yhb_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI 299 (437)
T ss_dssp HHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCCCCCC
T ss_conf 99999986554337998638999177566779999999999999999985043679877999997145532546775433
Q ss_pred ---CCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ---9999991065145556886617940135876654672479995699------9998899999999640012136885
Q 002636 768 ---PENVPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEI------GFSADDLQELVHSLSYVYQRSTTAV 838 (898)
Q Consensus 768 ---~~N~~pGTvVD~~i~~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~sv 838 (898)
.+||+||||||++||+|.+|||||+||.++|||+|||||+||+||+ ++++|+||+|||+|||+|+||+++|
T Consensus 300 ~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sV 379 (437)
T 2yhb_A 300 HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAV 379 (437)
T ss_dssp ----------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC--------
T ss_pred CCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 44668999855715644677773289973312104687638999937854323579998999999999877520315887
Q ss_pred CCCCHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 345426899999999852113--356889877778877889999999821210178990109
Q 002636 839 SVVTPICYAHLAAAQMSQFIK--FDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC 898 (898)
Q Consensus 839 siPaP~~yA~~~a~r~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 898 (898)
|+||||||||++|+|||.||. +++. +++|++++. +..+...+.++|++++++||||
T Consensus 380 sipaP~yYAh~~a~R~r~~l~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 380 SICPPAYYADLVCDRARIHQKELFDAL-DENDSVKTD---DFARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp --CHHHHHHHHHHHHHHHHCHHHHHHH-HHTSCCCHH---HHHHHHHHTSCCGGGTTSCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCC---CCCCCCCCCCCCHHHCCCCEEC
T ss_conf 748789999999999998745411577-777766777---7432223466597663783569
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=665.52 Aligned_cols=640 Identities=14% Similarity=0.148 Sum_probs=454.8
Q ss_pred CEEEEEEEEEEEE-EECCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCC
Q ss_conf 8689992598978-605881289988775317999888813679999999998501016963577197503323555676
Q 002636 51 TPMTLLTNHFEVR-MRQTEGYFCHYSVALFYEDGHPVDGKGIGRKILDKVQETYSHELEGKHFAYDGEKSLFTLGSFQRK 129 (898)
Q Consensus 51 ~~i~L~tN~f~i~-~~~~~~~~y~YdV~i~~~~~p~~~~k~~~r~i~~~l~~~~~~~~~g~~~vyDG~~~Lys~~~L~~~ 129 (898)
..+.|+-|-|.++ +...+..+|.|+|.+.|.+ +. +.....+...+.+ .++..+-| |. .+.|-.+ |..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~----~~~~~~~~-~~-~~~~~~~-~~~ 72 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPP--GR---EEVYPLLAQVARR----AGGVTVRM-GD-GLASWSP-PEV 72 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCC--CT---TTHHHHHHHHHHH----TCSSEEEE-TT-EEEESSC-TTT
T ss_pred CCEEEEEEEEECCCCCHHHCCEEEEEEECCCCC--CC---CHHHHHHHHHHHH----HCCEEEEE-CC-CEECCCC-CHH
T ss_conf 520589750034548853485058998507998--84---1477899999987----38747863-27-4000467-055
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHHHHHHH----
Q ss_conf 5079999705655545678999999999988643456899996599999982001758899997179860058999----
Q 002636 130 KLEFTIVVEDLSSNRTARNDSPGGDGSPGEGDRKRMRRPSRSKVIRVEISYAAKIPMQAIANALRGQETEHFQEAM---- 205 (898)
Q Consensus 130 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~l~~l~~~l~g~~~~~~~~~l---- 205 (898)
+..+-.+.. ..+...|.+.-.=...+++.+- ...+++
T Consensus 73 -~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 113 (685)
T 3ho1_A 73 -LVLEGTLAR----------------------------MGQTYAYRLYPKGRRPLDPKDP----------GERSVLSALA 113 (685)
T ss_dssp -SCCEEEEEC----------------------------SSCEEEEEEEEEEECCCCTTSH----------HHHHHHHHHH
T ss_pred -HHCCCHHCC----------------------------CCCCCCEEEEECCCCCCCCCCH----------HHHHHHHHHH
T ss_conf -410220002----------------------------3688663653056645788986----------7889999999
Q ss_pred -HHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECC-CEEEEEEECCEEEEECCCHHHHHHHH
Q ss_conf -9999998422222484101432238999873248996776305368998628-80368752211113216508899996
Q 002636 206 -RVLDIILRQNAANQGCLLVRQSFFHNNPRNFADLGGGVMGCRGFHSSFRATQ-SGLSLNMDVSTTMIVKPGPVVNFLLA 283 (898)
Q Consensus 206 -q~lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l~~g~e~w~G~~~Sir~~~-~gl~LniD~s~~~F~~~~~l~d~l~~ 283 (898)
..|+-.|+.. + +...-|.-.+-.. . .-|.|.|+.+|+...|.+.. +++.|.+|..+. |+++.++.+++..
T Consensus 114 ~~~~~~~~~~~-~--~~~~~~~~~~~~~--~--~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~ 185 (685)
T 3ho1_A 114 RRLLQERLRRL-E--GVWVEGLAVYRRE--H--ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQ 185 (685)
T ss_dssp HHHHHHHHHTC-S--SSEEETTEEEEEE--E--EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHH
T ss_pred HHHHHHHHHHH-H--CEEECCEEEEEEC--C--CCCCCEEEECCEEEEEEECCCCCEEEEEEEHEE-ECCHHHHHHHHHH
T ss_conf 99999998765-3--3377647898406--8--877743884366999998778867999740301-1476449999981
Q ss_pred HCCCCCCCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHCCCCCC
Q ss_conf 15999976002899996525849996117943899301789988660333568999999998143198999984397445
Q 002636 284 NQNVREPHQIDWNKAKRVLKNLRINTNHSNTEYKITGLSDLPCNQQTFSLKQKSGHNGDSDAIEITVYEYFVNNRHIKLE 363 (898)
Q Consensus 284 ~~~~~~~~~~~~~~i~~~Lkgl~V~~~y~~r~~~I~~i~~~~a~~~~F~~~~~~~~~g~~~~~~iTv~dYf~~~Y~i~L~ 363 (898)
... |- ..|.++|+.++|+|.+++. ..++..|-.. .+|++|||+++|.+ +
T Consensus 186 ~~~---------------~~-~~v~~~y~~~~~~~~~~~~-~~p~~~~l~~------------~~s~~~y~~~k~~~--~ 234 (685)
T 3ho1_A 186 GHP---------------LP-KRVRNAYDRRTWELLRLGE-EDPKELPLPG------------GLSLLDYHASKGRL--Q 234 (685)
T ss_dssp SCC---------------CC-SEEEESSSCCEECCCEEEC-CCTTCC------------------CSTTTTTTTSTT--T
T ss_pred CCC---------------CC-HHHHHHCCCCEEEEEECCC-CCCHHEECCC------------CCCHHHHHHHCCCC--C
T ss_conf 798---------------32-7776431662489863366-8933234578------------86599997542653--3
Q ss_pred CCCCCCEEE-CCCC---CC-----CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 799985484-1899---97-----52003551577267322456999999999999307988999999999995169931
Q 002636 364 YSADFPCIN-VGKP---KR-----ASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQKPQERMGVLTEAMRRNNYGAD 434 (898)
Q Consensus 364 ~~p~lPlv~-~g~~---~k-----~~ylP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~P~~R~~~i~~~~~~~~~~~~ 434 (898)
. -++|+|+ +.+. .+ .+||.|||| +.+. ++.+.. .+++.+|++|++.+.++++.
T Consensus 235 ~-~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~l-------~~~~~~---~~trlsP~~R~~~l~~~~~~------ 296 (685)
T 3ho1_A 235 G-REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LEDL-------HEEEGS---LALSLPWEERRRRTREIASW------ 296 (685)
T ss_dssp T-SCCCSEEEECSCC---CCEEEETTSEEEECC-TTTT-------SSCSSC---CCCCCCHHHHHHHHHHHHHH------
T ss_pred C-CCCCEEEEEECCCCCCCCCEEEEEEECHHHH-HHHH-------HHHHHH---CCCCCCHHHHHHHHHHHHHH------
T ss_conf 4-6786599995544578733244256322767-8777-------666640---62567989999999999999------
Q ss_pred HHHHCCCCEECCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCC-HHHHHHHHHHHHH
Q ss_conf 566204906527403764477189924406772248998856769950005543203999994871-0199999999999
Q 002636 435 QMLRSFGISIGTQFTQVEGRTLPAPKLKVGNGEDFFPRGGRWNFNNKQLVEPMQIKWWAIVNFSAR-CDIRSLCNNLIRC 513 (898)
Q Consensus 435 ~~l~~fGl~i~~~~~~v~grvL~pP~i~~g~~~~~~~~~G~W~~~~~~f~~p~~i~~W~vi~~~~~-~~~~~f~~~L~~~ 513 (898)
+++.|||+ +.+|++++||+||||+| +|+.. + .+.|++.+.+|+.+... .|++++++.. ..+++|++.|.+.
T Consensus 297 -i~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~-~---~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L~~v 368 (685)
T 3ho1_A 297 -IGRRLGLG-TPEAVRAQAYRLSIPKL-MGRRA-V---SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRALLRA 368 (685)
T ss_dssp -HHHTTCSC-CCEEEEEEEEECCCCCE-ESSSB-C---SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHHHHH
T ss_pred -HHHHCCCC-CCCCCEEEEEECCHHHH-CCCCC-C---CCCHHHCCCCCEECCCC-EEEEEECCCCHHHHHHHHHHHHHH
T ss_conf -88853999-89711687788388995-58997-5---78621114753113673-599996267267899999999998
Q ss_pred HHHCCCCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 76139654799400303313113740589999999999749999909999906999986457789976410492236651
Q 002636 514 GEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIA 593 (898)
Q Consensus 514 ~~~~G~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~iK~~~~~~~gI~TQci~ 593 (898)
++.+||.++.|... +.++. ...+...++...+ .++|+|+||+|+ ++.+.|+.||+.| .+.||+||||.
T Consensus 369 a~~~G~~i~~~~~~--~~~~d-----~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQcV~ 436 (685)
T 3ho1_A 369 FGASGASLRLHTLH--AHPSQ-----GLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQILN 436 (685)
T ss_dssp HHSSSSCEEEEECC--CCGGG-----THHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred HHHCCCEECCCEEE--CCCCC-----HHHHHHHHHHHHH---CCCCEEEEEECC-CCCCHHHHHHHHH-HCCCCCCEEEE
T ss_conf 87679376355110--47773-----6999999998642---399889999779-9954789999998-63997638996
Q ss_pred C--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCC-CCCCE
Q ss_conf 1--45563567798999874049965333533347888746892899999831399999999818999961378-97540
Q 002636 594 P--TKVNDQYITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQW-PSISR 670 (898)
Q Consensus 594 ~--~~~~~q~~~ni~lKiN~KlGG~n~~~~~~~~~~lp~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~VaS~d~-~~~~~ 670 (898)
. .+...+++.||++|||+||||+||.++. |. .++||||+||+|++. .++++++++.+. ...++
T Consensus 437 ~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~ 502 (685)
T 3ho1_A 437 VPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLL 502 (685)
T ss_dssp SSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCEEEEECC------CC---CCEEEEEEEEECCCC-----CCCCEEEEEEECCCCEEE
T ss_conf 1225640719999999998873983578568------99---986999999973898-----961239999978888777
Q ss_pred EEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-CCCCHHH-HHHHHCCCCCCCCE
Q ss_conf 368999616873351023477888835899999999999871999993299961575-6322146-89751026888860
Q 002636 671 YRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYSTSGKRKPENIIIFRLNT-LSCTFLQ-IEASKFLDEKWSPK 748 (898)
Q Consensus 671 y~~~~~~Q~~~~e~i~~l~~p~~~~~~~~~~~e~l~~f~~~~~~~~P~~IiiyRDGv-segq~~~-~~a~~~l~~~y~P~ 748 (898)
|. ....|.+..+.++++ ..|+.++|..|++.+ +.+|+||||||||| +|+|+.+ ++||+++ .++
T Consensus 503 ~~-~~~~Q~~e~l~~~~L---------~~~l~eaL~~Y~k~n-g~lP~RIIIyRDGV~se~E~~~I~eAl~~~----~~~ 567 (685)
T 3ho1_A 503 WT-LPEAQAGERIPQEVV---------WDLLEETLWAFRRKA-GRLPSRVLLLRNGRVPQDEFALALEALARE----GIA 567 (685)
T ss_dssp EE-CCCCCCSCCCHHHHH---------HHHHHHHHHHHHHHH-SSCCSEEEEEECSSSCSGGGHHHHHHHHHT----TCE
T ss_pred EE-EEECCCCCEECHHHH---------HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCHHHHHHHHHHHHHC----CCC
T ss_conf 67-887267858649999---------999999999999983-899848999958989989999999999861----998
Q ss_pred EEEEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9999960033320102799999999106514555688661794013-587665467247999569999988999999996
Q 002636 749 FTVIVAQKNHHTKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAH-AGMIGTSRPTHYHVLHDEIGFSADDLQELVHSL 827 (898)
Q Consensus 749 it~Ivv~Krh~~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh-~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~L 827 (898)
+|||+|+||||+|||+.+ .+|.+||+++. .+++|||.+| .+.|||+||+||+ +|++++++|+||++||+|
T Consensus 568 ~t~IvVqKRh~tRfF~~n--~pp~~Gt~v~~-----e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~L 638 (685)
T 3ho1_A 568 YDLVSVRKSGGGRVYPVQ--GRLADGLYVPL-----EDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHL 638 (685)
T ss_dssp EEEEEEESSCCCCEEESS--SCCCSSEEEEC-----STTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHG
T ss_pred EEEEEEEECCCCEEECCC--CCCCCEEEEEC-----CCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHHHHHHHHHH
T ss_conf 799999916871374689--89987599807-----897899996688876678619999--898998999999999997
Q ss_pred HHCCCCCC-CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 40012136-885345426899999999852
Q 002636 828 SYVYQRST-TAVSVVTPICYAHLAAAQMSQ 856 (898)
Q Consensus 828 c~~y~~~~-~svsiPaP~~yA~~~a~r~~~ 856 (898)
||+|+||+ +++|+||||||||++|++.+.
T Consensus 639 chmy~nst~~svsvPAP~~YAhklAk~~~r 668 (685)
T 3ho1_A 639 TRLYPASGFAFPRLPAPLHLADRLVKEVGR 668 (685)
T ss_dssp GGCCSSCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 775116899999867578999999999987
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=623.30 Aligned_cols=352 Identities=27% Similarity=0.393 Sum_probs=289.2
Q ss_pred CCCCEEEC-CCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 69950005-543203999994871---01999999999997613965479940030331311374058999999999974
Q 002636 478 FNNKQLVE-PMQIKWWAIVNFSAR---CDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKK 553 (898)
Q Consensus 478 ~~~~~f~~-p~~i~~W~vi~~~~~---~~~~~f~~~L~~~~~~~G~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (898)
+++++|++ ++++++|+++++... ..+++|++.|.+.++.+||.++.|........ +.+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~ 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECC---CCCHHHHH--HHHHHHCC
T ss_conf 98888516997277899999027778799999999999999876977479987541037---78638785--89875045
Q ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCC---CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999909999906999986457789976410492236651145---5635--6779899987404996533353334788
Q 002636 554 LPGPPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPTK---VNDQ--YITNVLLKINAKLGGMNSLLTLEHSRSI 628 (898)
Q Consensus 554 ~~~~~~lvlvilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~~---~~~q--~~~ni~lKiN~KlGG~n~~~~~~~~~~l 628 (898)
.+++|+|||+|+ ++.+.|+.||++||++.||+||||+.++ .++| ++.||++|||+||||+||.+++ .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~ 149 (388)
T 2yha_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (388)
T ss_dssp --HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CC
T ss_pred --CCCEEEEEEECC-CCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCC----CC
T ss_conf --898299999789-98348999999871057975089834560576748999999999999971893312256----65
Q ss_pred CCCCCCCEEEEEEEEECCC---CC--CCCCCEEEEEEEECCCCCCCEEEEEEEECC-CCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 8746892899999831399---99--999981899996137897540368999616-87335102347788883589999
Q 002636 629 PLVSKPVTMILGMDVSHGS---PG--RSDLPSIAAVVSSRQWPSISRYRASVRTQS-PKVEMIANLFKPGSETEDYGIIR 702 (898)
Q Consensus 629 p~~~~~~tmiiG~DV~H~~---~~--~~~~pSi~a~VaS~d~~~~~~y~~~~~~Q~-~~~e~i~~l~~p~~~~~~~~~~~ 702 (898)
|++.+.+|||||+||+||+ +| ....||++|+|||+|. ..++|.+.++.|. +++|+|++|. +|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~---------~~~~ 219 (388)
T 2yha_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFT---------DKFK 219 (388)
T ss_dssp HHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHH---------HHHH
T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-CCCEEEEEEEECCCCCCCHHHHHH---------HHHH
T ss_conf 545778779998777515656777767899879998777599-977797899986888625799999---------9999
Q ss_pred HHHHHHHH--HHCCCCCCEEEEEECCCCCCCHHH---------HHHHHCCCCCC-CCEEEEEEEEECCCCEEECCCCCCC
Q ss_conf 99999998--719999932999615756322146---------89751026888-8609999960033320102799999
Q 002636 703 ELFVDFYS--TSGKRKPENIIIFRLNTLSCTFLQ---------IEASKFLDEKW-SPKFTVIVAQKNHHTKFFQSGRPEN 770 (898)
Q Consensus 703 e~l~~f~~--~~~~~~P~~IiiyRDGvsegq~~~---------~~a~~~l~~~y-~P~it~Ivv~Krh~~Rff~~~~~~N 770 (898)
++|..|++ .+++.+|++|||||||||||||.+ ++||.++..+| .|+||||||+||
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr------------- 286 (388)
T 2yha_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG------------- 286 (388)
T ss_dssp HHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-------------
T ss_conf 9999998756543789752899946867257999999999999999998514467986799996466-------------
Q ss_pred CCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 9991065145556886617940135876654672479995699------9998899999999640012136885345426
Q 002636 771 VPPGTVVDKGVCHPRNNDFYLCAHAGMIGTSRPTHYHVLHDEI------GFSADDLQELVHSLSYVYQRSTTAVSVVTPI 844 (898)
Q Consensus 771 ~~pGTvVD~~i~~p~~~dFyL~sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~svsiPaP~ 844 (898)
+|||||+||+||+ ++++|+||+|||+|||+|+|||++||+||||
T Consensus 287 ------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r~t~sVsipaP~ 336 (388)
T 2yha_A 287 ------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPA 336 (388)
T ss_dssp ----------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC----------CHHH
T ss_pred ------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf ------------------------------68826999827864334579999999999999977753325887757589
Q ss_pred HHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 899999999852113--356889877778877889999999821210178990109
Q 002636 845 CYAHLAAAQMSQFIK--FDEMSDTSSSHNAMTSAGSIPVPELPVLHERVCNSMFFC 898 (898)
Q Consensus 845 ~yA~~~a~r~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 898 (898)
||||++|+|||.||. +++. +++|++++. +..+...+.++|++|+++||||
T Consensus 337 yYAh~~a~R~r~~l~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 337 YYADLVCDRARIHQKELFDAL-DENDSVKTD---DFARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp HHHHHHHHHHHHHCHHHHHHH-TTCSCCCHH---HHHHHHHHTCCCGGGTTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCC-CCCCCCCCC---CCCCCCCCCCCCHHHCCCCEEC
T ss_conf 999999999999855412677-766666777---6433223466597763784369
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=426.46 Aligned_cols=359 Identities=15% Similarity=0.115 Sum_probs=242.5
Q ss_pred EECCCCCEEEC--CCCCC------CCCCCCCCCCCCEEECCCCC--CEEEEEEECCCHHHHHHHHHHHHHHH---HCCCC
Q ss_conf 77189924406--77224------89988567699500055432--03999994871019999999999976---13965
Q 002636 454 RTLPAPKLKVG--NGEDF------FPRGGRWNFNNKQLVEPMQI--KWWAIVNFSARCDIRSLCNNLIRCGE---MKGMH 520 (898)
Q Consensus 454 rvL~pP~i~~g--~~~~~------~~~~G~W~~~~~~f~~p~~i--~~W~vi~~~~~~~~~~f~~~L~~~~~---~~G~~ 520 (898)
.-|..|.+.|+ +++.+ .+..| +.+...+..... .+|++|+..++.. |++.|.+... ..++.
T Consensus 4 ~~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~ 77 (427)
T 2w42_A 4 YKIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWH 77 (427)
T ss_dssp -------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCCEE
T ss_conf 44478753441247973444456787899---986699746778898899997733089---999998753312898405
Q ss_pred CCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEE--------CCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 479940030331311374058999999999974999990999990--------699998645778997641049223665
Q 002636 521 INNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPGPPQLLLCIL--------PERKNSDIYGPWKRKNLSEAGIVTQCI 592 (898)
Q Consensus 521 i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvil--------p~~~~~~~Y~~iK~~~~~~~gI~TQci 592 (898)
+..+... ...+. +.++ +.+.+ ++++++||+ |+ ++.+.|. +|+ ++.+.|||||||
T Consensus 78 ~~~~~~~---~~~y~-----~~i~---~~l~~----~~~lvlvilp~~~~~~~~~-~~~~~y~-~K~-~~~~~gvptQ~I 139 (427)
T 2w42_A 78 IHNINIS---EFIYD-----SPHF---DSIKS----QVDNAIDTGVDGIMLVLPE-YNTPLYY-KLK-SYLINSIPSQFM 139 (427)
T ss_dssp CCSCEEE---EEECS-----SSSH---HHHHH----HHHHHHHHCCSEEEEEESS-CCHHHHH-HHH-HHHHTTSCEEEE
T ss_pred ECCCCCC---HHHHH-----HHHH---HHHCC----CCCEEEEEEECCCCCCCCC-CCCCHHH-HHH-HHHCCCCCCEEE
T ss_conf 3577678---07899-----9999---97437----9979999997601045898-7750599-999-986799675898
Q ss_pred ECCCCC---HH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 114556---35-67798999874049965333533347888746892899999831399999999818999961378975
Q 002636 593 APTKVN---DQ-YITNVLLKINAKLGGMNSLLTLEHSRSIPLVSKPVTMILGMDVSHGSPGRSDLPSIAAVVSSRQWPSI 668 (898)
Q Consensus 593 ~~~~~~---~q-~~~ni~lKiN~KlGG~n~~~~~~~~~~lp~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~VaS~d~~~~ 668 (898)
..+++. .+ ++.||++|||+||||+||.++.. .|. .++||||+||+|++++ +++|++.+.|. ..
T Consensus 140 ~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~~-~g 206 (427)
T 2w42_A 140 RYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFKK-DG 206 (427)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEECT-TS
T ss_pred EHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CCC---CCEEEEEEEEEECCCC-----CEEEEEEEECC-CC
T ss_conf 73354556505699999999978738966064567----898---9869997899876999-----57999999838-99
Q ss_pred CEEEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCC--EEEEEE--CCCCCCCHHH-HHHHHCCC
Q ss_conf 403689996168733510234778888358999999999998-71999993--299961--5756322146-89751026
Q 002636 669 SRYRASVRTQSPKVEMIANLFKPGSETEDYGIIRELFVDFYS-TSGKRKPE--NIIIFR--LNTLSCTFLQ-IEASKFLD 742 (898)
Q Consensus 669 ~~y~~~~~~Q~~~~e~i~~l~~p~~~~~~~~~~~e~l~~f~~-~~~~~~P~--~IiiyR--DGvsegq~~~-~~a~~~l~ 742 (898)
..+......|.+++|++++|. .+++++|..|++ . ++.+|+ |||||. ..+.+.+... ++||.+++
T Consensus 207 ~~~~~~~~~~~~~~E~~~~l~---------~~l~~aL~~y~~~~-~~~~P~~~rIii~gq~~~v~~~Ei~~i~~a~~~~~ 276 (427)
T 2w42_A 207 TMLWNEISPIVTSSEYLTYLK---------STIKKVVYGFKKSN-PDWDVEKLTLHVSGKRPKMKDGETKILKETVEELK 276 (427)
T ss_dssp CEEEEEECCCEEGGGHHHHHH---------HHHHHHHHHHHHHC-TTCCCSEEEEEEESSCCSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCHHHHHHHHH---------HHHHHHHHHHHHHH-CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 789998884277067999999---------99999999999874-27899825999992141116999999999998715
Q ss_pred C----CCCCEEEEEEEEECCC-CEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCC------CCCCCCCCCEEEEEEC
Q ss_conf 8----8886099999600333-201027999999991065145556886617940135------8766546724799956
Q 002636 743 E----KWSPKFTVIVAQKNHH-TKFFQSGRPENVPPGTVVDKGVCHPRNNDFYLCAHA------GMIGTSRPTHYHVLHD 811 (898)
Q Consensus 743 ~----~y~P~it~Ivv~Krh~-~Rff~~~~~~N~~pGTvVD~~i~~p~~~dFyL~sh~------~~qGTarPt~Y~Vl~d 811 (898)
. +++|+++||+|+|||| +|||..+..+||+||||||.+ .+.+++|++.+|. ..+ +++||||+|++|
T Consensus 277 ~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~--~~~~l~~~~g~q~~~~~~~~~~-~~~Pt~y~vi~d 353 (427)
T 2w42_A 277 KQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLS--SKRYLLTLLQPYLKRNGLEMVT-PIKPLSVEIVSD 353 (427)
T ss_dssp HTTSSCTTCEEEEEEEEECCCEEEEC--------CCSEEEESS--SSEEEEEEEC---------CEE-EEEEEEEEEEEE
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCEEEECC--CCEEEEEEEEEECCCCCCCCCC-CCCCEEEEEEEC
T ss_conf 4434578887799999816665466547888998996499758--9808999974523656656535-889879999966
Q ss_pred ----CCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf ----9999-98899999999640012136885345426899999999852113356
Q 002636 812 ----EIGF-SADDLQELVHSLSYVYQRSTTAVSVVTPICYAHLAAAQMSQFIKFDE 862 (898)
Q Consensus 812 ----~~~~-~~d~lq~lt~~Lc~~y~~~~~svsiPaP~~yA~~~a~r~~~~l~~~~ 862 (898)
++++ ++|+||++||+|||+|.|++.++|+||||||||++|++++....+++
T Consensus 354 ~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 354 NWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 87684459899999999998547656888889837650769999999865642588
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=199.24 Aligned_cols=131 Identities=19% Similarity=0.404 Sum_probs=113.7
Q ss_pred ECCCHHHHHHHHHCCC---CCCCCC--CHHHHHHHHCCCEEEEEC------CCCEEEEEECCCCCCCCCEEECCCCCCCC
Q ss_conf 2165088999961599---997600--289999652584999611------79438993017899886603335689999
Q 002636 272 VKPGPVVNFLLANQNV---REPHQI--DWNKAKRVLKNLRINTNH------SNTEYKITGLSDLPCNQQTFSLKQKSGHN 340 (898)
Q Consensus 272 ~~~~~l~d~l~~~~~~---~~~~~~--~~~~i~~~Lkgl~V~~~y------~~r~~~I~~i~~~~a~~~~F~~~~~~~~~ 340 (898)
++++||+||+.++.+. .....+ ++.+++++|+|++|.++| ++|+|+|.||++.++++.+|+.++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g----- 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG----- 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSS-----
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECCC-----
T ss_conf 886349999999862166665575668999999974983999956877667873599810568995212897499-----
Q ss_pred CCCCCEEEEHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99998143198999984397445799985484189997520035515772673224569999999999993079
Q 002636 341 GDSDAIEITVYEYFVNNRHIKLEYSADFPCINVGKPKRASYIPLELCTLVSLQRYTKALSNQQRASLVEKSRQK 414 (898)
Q Consensus 341 g~~~~~~iTv~dYf~~~Y~i~L~~~p~lPlv~~g~~~k~~ylP~Elc~i~~~Q~~~~~l~~~q~~~lik~~~~~ 414 (898)
.++||+|||+++ |++|+| |+||||++|++.+++|||||||.|++||+++++|++.|+++||++++.+
T Consensus 77 -----~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 77 -----KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp -----CEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred -----CEEEHHHHHHHC-CCCCCC-CCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf -----779899999872-997789-9987587437889758511858805895224318989999999998359
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=189.05 Aligned_cols=132 Identities=38% Similarity=0.575 Sum_probs=109.8
Q ss_pred CCEEECCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 950005543203999994871---01999999999997613965479940030331311374058999999999974999
Q 002636 480 NKQLVEPMQIKWWAIVNFSAR---CDIRSLCNNLIRCGEMKGMHINNPHEVFEESNQFRREAAPIRVERMFEIIKKKLPG 556 (898)
Q Consensus 480 ~~~f~~p~~i~~W~vi~~~~~---~~~~~f~~~L~~~~~~~G~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (898)
+++|++|+++++|++++++++ .++++|++.|.+.|+.+||.+++|..+.... ...++++.+++.+.+.. .
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~------~~~~~~e~~l~~~~~~~-~ 74 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFIS------CPPEHIEEALLDIHKRA-P 74 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEE------CCGGGHHHHHHHHHHHC-T
T ss_pred CCEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC------CCCHHHHHHHHHHHHHC-C
T ss_conf 8868358525748999836977989999999999999998498348998875636------88336999999999756-8
Q ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECC---CCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 990999990699998645778997641049223665114---5563567798999874049965333
Q 002636 557 PPQLLLCILPERKNSDIYGPWKRKNLSEAGIVTQCIAPT---KVNDQYITNVLLKINAKLGGMNSLL 620 (898)
Q Consensus 557 ~~~lvlvilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~---~~~~q~~~ni~lKiN~KlGG~n~~~ 620 (898)
++||++||+|+ ++.+ |+.||++||++.||+||||+.+ +.++||++||++|||+||||+|+.+
T Consensus 75 ~~qlv~~ilp~-~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 75 GLQLLIVILPD-VTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp TCSEEEEECCS-SSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCEEEEEECC-CCCC-HHHHHHHHHCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99689999899-9975-89999988516883439961455057778899999999822127555719
Done!