BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002638
(898 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 84 LYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK-EAC 140
L+ + D +P V+K R L ++ E+ + H+ I+ ++++R +D D + EAC
Sbjct: 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC 277
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 84 LYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK-EAC 140
L+ + D +P V+K R L ++ E+ + H+ I+ ++++R +D D + EAC
Sbjct: 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC 277
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 84 LYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK-EAC 140
L+ + D +P V+K R L ++ E+ + H+ I+ ++++R +D D + EAC
Sbjct: 220 LFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEAC 277
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 17/109 (15%)
Query: 162 VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM 221
+ +PL + + +++ V+ AA+C+AK+ + + +V Q + L+S+ N M
Sbjct: 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDTLKDLISDSNPM 175
Query: 222 AKASLLPVVGSLSQVGAIAP---------QSLEPLLQSIHECLGSTDWA 261
A+ V +LS++ P QS+ LL +++EC T+WA
Sbjct: 176 VVANR---VAALSEIAESHPSSNLLDLKAQSINKLLTALNEC---TEWA 218
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 84 LYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK-EAC 140
L+ + D +P V+K R L + E+ + H I+ + ++R +D D + EAC
Sbjct: 220 LFALAGDEEPEVRKNVCRALVXLLEVRMDRLLPHXHNIVEYXLQRTQDQDENVALEAC 277
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 162 VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM 221
+ +PL + + +++ V+ AA+C+AK+ + + +V Q + L+++ N M
Sbjct: 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPM 175
Query: 222 AKASLLPVVGSLSQ------VGAIAPQSLEPLLQSIHECLGSTDW 260
A+ + + +S+ + + PQ++ LL +++EC T+W
Sbjct: 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC---TEW 217
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 162 VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM 221
+ +PL + + +++ V+ AA+C+AK+ + + +V Q + L+++ N M
Sbjct: 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPM 175
Query: 222 AKASLLPVVGSLSQ------VGAIAPQSLEPLLQSIHECLGSTDW 260
A+ + + +S+ + + PQ++ LL +++EC T+W
Sbjct: 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC---TEW 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,881,941
Number of Sequences: 62578
Number of extensions: 1064754
Number of successful extensions: 1793
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1780
Number of HSP's gapped (non-prelim): 21
length of query: 898
length of database: 14,973,337
effective HSP length: 108
effective length of query: 790
effective length of database: 8,214,913
effective search space: 6489781270
effective search space used: 6489781270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)