Query 002638
Match_columns 898
No_of_seqs 169 out of 418
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 3.4E-30 7.3E-35 292.9 15.3 258 57-320 371-649 (885)
2 KOG2171 Karyopherin (importin) 100.0 5.8E-27 1.3E-31 280.5 24.1 258 57-321 325-596 (1075)
3 KOG2023 Nuclear transport rece 99.9 7.8E-26 1.7E-30 257.7 16.9 266 42-320 12-286 (885)
4 KOG1242 Protein containing ada 99.5 1.3E-12 2.8E-17 150.9 21.3 299 16-321 109-450 (569)
5 KOG1241 Karyopherin (importin) 99.4 1.4E-11 2.9E-16 144.4 24.2 278 34-311 313-758 (859)
6 KOG0213 Splicing factor 3b, su 99.4 8.7E-12 1.9E-16 145.0 21.8 214 57-278 732-957 (1172)
7 KOG2171 Karyopherin (importin) 99.4 5.3E-11 1.1E-15 144.7 28.1 275 36-312 75-414 (1075)
8 COG5215 KAP95 Karyopherin (imp 99.2 1.4E-09 3E-14 124.6 24.3 255 39-293 320-729 (858)
9 PF12348 CLASP_N: CLASP N term 99.1 1.8E-09 3.9E-14 111.8 18.3 197 77-282 5-213 (228)
10 PRK09687 putative lyase; Provi 99.1 5.3E-09 1.2E-13 113.7 20.2 184 53-273 35-219 (280)
11 KOG1242 Protein containing ada 99.1 5.5E-09 1.2E-13 121.4 20.9 251 40-301 213-471 (569)
12 KOG1241 Karyopherin (importin) 99.1 8.3E-09 1.8E-13 121.6 20.9 264 44-321 2-290 (859)
13 COG5181 HSH155 U2 snRNP splice 98.9 1.9E-08 4.1E-13 116.1 16.1 224 48-279 526-763 (975)
14 PRK13800 putative oxidoreducta 98.9 9.1E-08 2E-12 118.8 23.5 241 31-314 608-865 (897)
15 PRK13800 putative oxidoreducta 98.9 6.6E-08 1.4E-12 119.9 22.3 217 53-313 664-896 (897)
16 PRK09687 putative lyase; Provi 98.9 3E-08 6.4E-13 107.9 16.9 194 76-313 24-218 (280)
17 PF01602 Adaptin_N: Adaptin N 98.9 4.1E-08 8.9E-13 112.9 17.5 243 53-318 54-332 (526)
18 KOG1059 Vesicle coat complex A 98.8 2.9E-07 6.2E-12 108.4 21.4 229 60-318 128-364 (877)
19 KOG0166 Karyopherin (importin) 98.8 1.4E-07 3.1E-12 109.2 17.1 253 40-301 109-382 (514)
20 PF01602 Adaptin_N: Adaptin N 98.8 1.7E-07 3.8E-12 107.8 17.4 225 47-292 83-348 (526)
21 KOG0212 Uncharacterized conser 98.7 8.5E-07 1.8E-11 102.4 19.8 256 56-320 15-280 (675)
22 KOG0212 Uncharacterized conser 98.7 2.3E-06 5E-11 99.0 21.7 277 38-320 119-407 (675)
23 KOG0915 Uncharacterized conser 98.6 7.6E-07 1.6E-11 111.2 17.1 226 60-292 940-1177(1702)
24 PF12348 CLASP_N: CLASP N term 98.6 1.3E-06 2.8E-11 90.7 16.4 174 53-235 19-206 (228)
25 PLN03200 cellulose synthase-in 98.6 4.8E-06 1E-10 108.9 23.8 254 52-316 415-723 (2102)
26 PF12755 Vac14_Fab1_bd: Vacuol 98.5 4.6E-07 9.9E-12 84.4 10.2 93 95-192 2-94 (97)
27 KOG1824 TATA-binding protein-i 98.5 2.6E-05 5.6E-10 94.5 25.3 237 77-320 129-407 (1233)
28 KOG0166 Karyopherin (importin) 98.5 3.6E-06 7.9E-11 97.8 17.5 261 53-321 164-441 (514)
29 KOG1824 TATA-binding protein-i 98.5 1.5E-05 3.2E-10 96.4 22.6 224 39-280 856-1100(1233)
30 PLN03200 cellulose synthase-in 98.5 1.4E-05 3.1E-10 104.7 24.1 256 53-320 542-812 (2102)
31 PF13513 HEAT_EZ: HEAT-like re 98.5 1.4E-07 2.9E-12 77.7 3.9 55 93-147 1-55 (55)
32 PF10508 Proteasom_PSMB: Prote 98.4 3.2E-05 6.9E-10 90.8 24.5 262 45-318 43-318 (503)
33 PF12460 MMS19_C: RNAPII trans 98.4 3.3E-05 7.2E-10 88.3 23.1 224 37-294 186-413 (415)
34 COG5215 KAP95 Karyopherin (imp 98.4 5E-05 1.1E-09 88.3 23.5 268 40-312 90-391 (858)
35 PF10508 Proteasom_PSMB: Prote 98.4 2.1E-05 4.5E-10 92.3 21.2 241 40-299 3-259 (503)
36 KOG1248 Uncharacterized conser 98.4 6.5E-05 1.4E-09 93.1 25.8 253 45-297 658-922 (1176)
37 PTZ00429 beta-adaptin; Provisi 98.4 9.4E-05 2E-09 90.5 26.9 216 81-313 107-323 (746)
38 PF12755 Vac14_Fab1_bd: Vacuol 98.3 4.1E-06 8.8E-11 78.1 10.5 84 224-307 4-88 (97)
39 KOG1820 Microtubule-associated 98.3 2.4E-05 5.3E-10 95.7 19.7 199 77-285 251-454 (815)
40 KOG0213 Splicing factor 3b, su 98.3 0.0001 2.2E-09 87.6 23.2 168 57-234 492-664 (1172)
41 KOG0915 Uncharacterized conser 98.3 0.00011 2.4E-09 92.6 24.6 238 77-314 1037-1304(1702)
42 KOG2032 Uncharacterized conser 98.3 0.00013 2.9E-09 83.9 22.8 259 50-315 188-530 (533)
43 KOG1240 Protein kinase contain 98.2 3.2E-05 7E-10 95.5 17.9 227 34-285 416-661 (1431)
44 PTZ00429 beta-adaptin; Provisi 98.2 0.00038 8.2E-09 85.3 25.3 251 56-321 120-435 (746)
45 KOG2956 CLIP-associating prote 98.1 0.00013 2.9E-09 83.5 19.3 202 77-288 285-491 (516)
46 KOG1248 Uncharacterized conser 98.0 0.0021 4.5E-08 80.4 27.6 243 60-306 632-888 (1176)
47 PF05004 IFRD: Interferon-rela 98.0 0.00078 1.7E-08 74.8 22.1 207 90-298 54-284 (309)
48 cd00020 ARM Armadillo/beta-cat 97.9 1.9E-05 4.2E-10 72.0 6.8 111 76-194 8-120 (120)
49 PF12717 Cnd1: non-SMC mitotic 97.9 0.00043 9.3E-09 70.5 16.6 93 92-195 1-93 (178)
50 cd00020 ARM Armadillo/beta-cat 97.9 3.6E-05 7.8E-10 70.2 7.9 109 166-274 8-119 (120)
51 KOG2933 Uncharacterized conser 97.9 0.00021 4.5E-09 78.6 13.8 174 77-264 86-266 (334)
52 KOG1991 Nuclear transport rece 97.8 0.0025 5.3E-08 78.5 23.8 182 64-253 395-592 (1010)
53 COG5064 SRP1 Karyopherin (impo 97.8 8.3E-05 1.8E-09 82.4 10.2 216 74-301 156-387 (526)
54 COG1413 FOG: HEAT repeat [Ener 97.8 0.0023 4.9E-08 70.4 20.6 152 82-276 46-210 (335)
55 PF13646 HEAT_2: HEAT repeats; 97.8 0.00018 3.9E-09 63.4 9.7 78 89-190 10-88 (88)
56 COG5181 HSH155 U2 snRNP splice 97.8 0.0017 3.8E-08 76.4 19.9 267 45-320 606-916 (975)
57 KOG0211 Protein phosphatase 2A 97.7 0.0019 4.1E-08 79.1 20.7 229 76-318 434-666 (759)
58 COG1413 FOG: HEAT repeat [Ener 97.7 0.0023 5.1E-08 70.3 19.6 182 55-284 57-252 (335)
59 KOG1240 Protein kinase contain 97.7 0.0049 1.1E-07 77.1 22.9 258 53-320 474-790 (1431)
60 PF13251 DUF4042: Domain of un 97.6 0.0008 1.7E-08 69.6 13.0 142 95-237 2-176 (182)
61 KOG2956 CLIP-associating prote 97.5 0.0027 5.8E-08 73.2 16.7 195 45-250 288-494 (516)
62 TIGR02270 conserved hypothetic 97.5 0.0012 2.6E-08 76.0 14.1 151 119-313 53-204 (410)
63 KOG4653 Uncharacterized conser 97.5 0.011 2.3E-07 72.3 22.0 221 88-321 736-969 (982)
64 PF13646 HEAT_2: HEAT repeats; 97.4 0.00064 1.4E-08 59.9 8.4 86 122-231 1-88 (88)
65 PF12719 Cnd3: Nuclear condens 97.4 0.058 1.3E-06 59.4 24.7 133 60-196 6-145 (298)
66 KOG4224 Armadillo repeat prote 97.4 0.0024 5.2E-08 71.7 13.5 227 45-278 212-449 (550)
67 KOG2022 Nuclear transport rece 97.4 0.013 2.8E-07 71.7 20.5 176 72-254 455-640 (982)
68 KOG1967 DNA repair/transcripti 97.3 0.0013 2.9E-08 80.2 12.1 157 163-319 865-1027(1030)
69 COG5240 SEC21 Vesicle coat com 97.3 0.02 4.4E-07 67.5 21.0 227 72-315 296-554 (898)
70 PF14500 MMS19_N: Dos2-interac 97.3 0.087 1.9E-06 57.5 25.0 229 53-293 11-256 (262)
71 KOG0211 Protein phosphatase 2A 97.3 0.0096 2.1E-07 73.2 18.8 178 120-306 237-417 (759)
72 KOG1967 DNA repair/transcripti 97.3 0.0018 3.9E-08 79.1 12.2 213 53-271 786-1020(1030)
73 PF05004 IFRD: Interferon-rela 97.3 0.033 7.2E-07 62.0 21.3 200 118-320 41-261 (309)
74 KOG2274 Predicted importin 9 [ 97.2 0.03 6.5E-07 68.8 21.6 239 41-290 2-274 (1005)
75 KOG1062 Vesicle coat complex A 97.2 0.012 2.7E-07 71.3 17.9 102 80-195 108-209 (866)
76 PF12460 MMS19_C: RNAPII trans 97.2 0.11 2.3E-06 59.9 24.9 248 56-313 112-391 (415)
77 KOG4224 Armadillo repeat prote 97.2 0.0061 1.3E-07 68.6 14.0 253 48-314 174-444 (550)
78 PF04826 Arm_2: Armadillo-like 97.1 0.014 3E-07 63.5 16.2 192 72-278 9-208 (254)
79 TIGR02270 conserved hypothetic 97.1 0.057 1.2E-06 62.5 21.6 24 122-145 88-111 (410)
80 KOG1020 Sister chromatid cohes 97.1 0.022 4.8E-07 73.0 19.3 150 54-217 793-942 (1692)
81 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0013 2.8E-08 54.1 4.9 53 260-312 1-53 (55)
82 KOG1943 Beta-tubulin folding c 96.9 0.19 4.1E-06 63.2 24.8 157 114-278 335-503 (1133)
83 KOG1062 Vesicle coat complex A 96.9 0.099 2.2E-06 63.9 21.9 228 57-295 123-397 (866)
84 KOG2259 Uncharacterized conser 96.9 0.019 4.2E-07 68.5 15.6 219 81-313 200-472 (823)
85 PF03378 CAS_CSE1: CAS/CSE pro 96.9 0.046 1E-06 63.7 18.5 215 77-294 24-249 (435)
86 COG5064 SRP1 Karyopherin (impo 96.8 0.015 3.2E-07 65.2 13.3 259 53-320 169-447 (526)
87 KOG1820 Microtubule-associated 96.8 0.043 9.4E-07 68.1 18.4 193 117-318 250-445 (815)
88 PF02985 HEAT: HEAT repeat; I 96.8 0.0017 3.6E-08 48.2 3.7 31 121-151 1-31 (31)
89 PF12717 Cnd1: non-SMC mitotic 96.7 0.028 6.1E-07 57.3 13.7 115 178-298 1-116 (178)
90 PF10274 ParcG: Parkin co-regu 96.7 0.017 3.6E-07 60.1 11.9 115 204-320 36-168 (183)
91 KOG1060 Vesicle coat complex A 96.7 0.4 8.6E-06 58.9 24.7 220 47-279 150-425 (968)
92 COG5656 SXM1 Importin, protein 96.6 0.45 9.7E-06 58.1 23.6 169 75-253 404-587 (970)
93 KOG1943 Beta-tubulin folding c 96.5 0.13 2.7E-06 64.7 19.6 238 36-293 333-592 (1133)
94 COG5096 Vesicle coat complex, 96.4 0.39 8.6E-06 59.3 22.8 156 39-212 54-210 (757)
95 KOG4653 Uncharacterized conser 96.4 0.32 6.9E-06 60.1 21.4 223 45-278 729-967 (982)
96 PF02985 HEAT: HEAT repeat; I 96.4 0.0062 1.3E-07 45.2 4.5 30 247-276 1-30 (31)
97 COG5096 Vesicle coat complex, 96.4 0.074 1.6E-06 65.4 16.1 152 65-233 40-193 (757)
98 KOG1061 Vesicle coat complex A 96.3 0.14 3E-06 62.4 18.0 217 31-278 8-231 (734)
99 PF08167 RIX1: rRNA processing 96.3 0.11 2.5E-06 52.6 14.6 137 76-214 22-163 (165)
100 KOG1058 Vesicle coat complex C 96.2 0.85 1.8E-05 55.9 23.5 155 73-229 128-340 (948)
101 KOG1993 Nuclear transport rece 96.2 0.25 5.4E-06 60.6 19.0 251 60-320 416-689 (978)
102 KOG0567 HEAT repeat-containing 96.1 0.07 1.5E-06 58.3 12.7 202 75-315 67-279 (289)
103 PF04826 Arm_2: Armadillo-like 96.1 0.11 2.4E-06 56.5 14.1 182 39-232 12-199 (254)
104 PF10274 ParcG: Parkin co-regu 96.0 0.083 1.8E-06 55.0 12.3 93 77-174 36-129 (183)
105 PF08569 Mo25: Mo25-like; Int 96.0 0.95 2.1E-05 51.4 21.6 211 83-299 80-313 (335)
106 KOG2274 Predicted importin 9 [ 96.0 1.3 2.9E-05 55.1 23.6 214 77-300 488-720 (1005)
107 KOG0414 Chromosome condensatio 95.9 0.12 2.6E-06 65.4 15.1 171 139-323 892-1068(1251)
108 cd08050 TAF6 TATA Binding Prot 95.9 0.061 1.3E-06 60.8 11.8 132 163-303 176-325 (343)
109 KOG1991 Nuclear transport rece 95.9 0.83 1.8E-05 57.3 21.8 224 42-278 3-275 (1010)
110 KOG1078 Vesicle coat complex C 95.9 0.27 5.9E-06 60.1 17.4 228 76-315 279-531 (865)
111 COG5240 SEC21 Vesicle coat com 95.9 0.34 7.4E-06 57.7 17.6 204 76-300 261-467 (898)
112 PF11865 DUF3385: Domain of un 95.7 0.093 2E-06 53.2 11.1 142 77-235 8-157 (160)
113 KOG2025 Chromosome condensatio 95.7 1 2.2E-05 55.0 20.9 197 62-272 63-291 (892)
114 KOG1992 Nuclear export recepto 95.7 0.41 8.9E-06 59.0 17.9 258 53-320 373-669 (960)
115 KOG2259 Uncharacterized conser 95.7 0.26 5.6E-06 59.4 16.0 187 116-315 193-438 (823)
116 PF08167 RIX1: rRNA processing 95.7 0.23 4.9E-06 50.5 13.8 137 114-255 19-164 (165)
117 PF10363 DUF2435: Protein of u 95.6 0.093 2E-06 48.8 9.7 78 86-175 10-87 (92)
118 KOG0803 Predicted E3 ubiquitin 95.6 0.89 1.9E-05 59.3 21.4 216 38-259 36-289 (1312)
119 PF12530 DUF3730: Protein of u 95.6 1.6 3.5E-05 46.8 20.5 194 49-259 9-216 (234)
120 KOG1060 Vesicle coat complex A 95.6 0.82 1.8E-05 56.3 19.6 238 43-306 321-561 (968)
121 KOG2032 Uncharacterized conser 95.5 0.56 1.2E-05 55.1 17.5 57 77-133 256-312 (533)
122 KOG2025 Chromosome condensatio 95.5 1.9 4.2E-05 52.7 22.3 219 77-314 42-289 (892)
123 PF12231 Rif1_N: Rap1-interact 95.5 5.8 0.00013 45.5 25.5 188 95-311 150-347 (372)
124 smart00802 UME Domain in UVSB 95.4 0.13 2.8E-06 49.2 10.2 73 77-151 9-85 (107)
125 PF08064 UME: UME (NUC010) dom 95.4 0.15 3.3E-06 48.5 10.5 73 77-151 9-85 (107)
126 KOG1059 Vesicle coat complex A 95.4 2.8 6E-05 51.5 22.9 244 39-302 251-512 (877)
127 smart00638 LPD_N Lipoprotein N 95.4 0.62 1.3E-05 55.7 18.0 136 77-230 395-540 (574)
128 PF13251 DUF4042: Domain of un 95.3 0.26 5.7E-06 51.3 12.8 141 135-278 1-177 (182)
129 PF08767 CRM1_C: CRM1 C termin 95.3 2 4.4E-05 48.2 20.7 190 36-235 38-247 (319)
130 KOG1992 Nuclear export recepto 95.1 5.2 0.00011 49.9 24.3 243 53-301 510-778 (960)
131 COG5095 TAF6 Transcription ini 95.1 0.25 5.3E-06 55.0 12.3 130 163-301 195-342 (450)
132 KOG1020 Sister chromatid cohes 95.1 0.61 1.3E-05 60.6 17.2 168 135-315 792-960 (1692)
133 KOG2549 Transcription initiati 95.0 0.51 1.1E-05 56.0 15.4 130 163-301 205-353 (576)
134 KOG1993 Nuclear transport rece 94.9 4.1 8.8E-05 50.6 22.6 212 39-257 521-751 (978)
135 PF12074 DUF3554: Domain of un 94.9 1.9 4.1E-05 48.3 19.2 191 77-281 24-241 (339)
136 KOG2022 Nuclear transport rece 94.8 11 0.00023 47.5 26.1 267 41-322 505-829 (982)
137 PF10350 DUF2428: Putative dea 94.8 0.68 1.5E-05 50.3 14.7 169 93-261 61-255 (255)
138 PF05918 API5: Apoptosis inhib 94.8 8.2 0.00018 46.8 24.6 98 48-150 28-126 (556)
139 KOG4413 26S proteasome regulat 94.7 6.2 0.00013 44.9 21.7 114 37-150 31-158 (524)
140 KOG2081 Nuclear transport regu 94.7 1.6 3.5E-05 52.1 18.2 170 34-216 330-520 (559)
141 PF08389 Xpo1: Exportin 1-like 94.7 0.13 2.8E-06 49.3 8.1 125 134-270 2-148 (148)
142 KOG1517 Guanine nucleotide bin 94.7 0.77 1.7E-05 57.9 16.1 142 135-279 572-736 (1387)
143 KOG4535 HEAT and armadillo rep 94.4 1.3 2.8E-05 52.1 16.4 271 29-306 95-452 (728)
144 KOG2933 Uncharacterized conser 94.4 0.69 1.5E-05 51.8 13.7 150 164-318 128-279 (334)
145 PF05536 Neurochondrin: Neuroc 94.4 7.8 0.00017 46.8 23.7 194 79-279 53-265 (543)
146 KOG2137 Protein kinase [Signal 94.4 1.7 3.6E-05 53.3 17.8 146 114-269 343-490 (700)
147 PF12719 Cnd3: Nuclear condens 94.3 5.1 0.00011 44.3 20.3 131 99-237 3-145 (298)
148 PF04118 Dopey_N: Dopey, N-ter 94.2 1.6 3.4E-05 49.1 16.1 212 39-262 53-287 (307)
149 PF01347 Vitellogenin_N: Lipop 94.1 5.8 0.00013 47.8 22.0 156 132-311 447-617 (618)
150 PF10521 DUF2454: Protein of u 94.0 1.9 4.1E-05 47.5 16.3 136 159-294 113-272 (282)
151 KOG0414 Chromosome condensatio 94.0 3.6 7.8E-05 52.9 20.0 90 53-149 935-1027(1251)
152 KOG0392 SNF2 family DNA-depend 94.0 2.3 5E-05 54.8 18.3 177 137-321 750-930 (1549)
153 KOG2021 Nuclear mRNA export fa 93.9 9.8 0.00021 47.2 22.6 216 44-276 7-261 (980)
154 KOG2160 Armadillo/beta-catenin 93.7 2.7 5.8E-05 47.9 16.9 175 45-234 86-281 (342)
155 smart00638 LPD_N Lipoprotein N 93.7 10 0.00022 45.5 22.8 219 59-311 310-540 (574)
156 cd08050 TAF6 TATA Binding Prot 93.7 1.2 2.7E-05 50.5 14.4 77 113-193 251-339 (343)
157 KOG2149 Uncharacterized conser 93.5 0.82 1.8E-05 52.6 12.5 136 80-218 59-194 (393)
158 KOG1061 Vesicle coat complex A 93.5 1.4 3.1E-05 54.1 15.2 265 41-323 118-419 (734)
159 KOG1078 Vesicle coat complex C 93.4 2.3 5.1E-05 52.5 16.7 202 77-300 243-446 (865)
160 KOG2160 Armadillo/beta-catenin 93.2 6.7 0.00014 44.8 18.9 178 93-278 51-243 (342)
161 KOG0392 SNF2 family DNA-depend 93.1 0.97 2.1E-05 58.0 13.3 177 57-237 145-327 (1549)
162 PF10521 DUF2454: Protein of u 93.1 2.6 5.6E-05 46.4 15.4 158 101-259 98-278 (282)
163 PF12054 DUF3535: Domain of un 93.1 4.2 9.2E-05 47.8 17.9 221 57-281 103-430 (441)
164 KOG1822 Uncharacterized conser 92.8 8.2 0.00018 51.9 21.1 235 57-293 935-1208(2067)
165 PF08506 Cse1: Cse1; InterPro 92.8 0.27 5.9E-06 56.3 7.5 130 53-189 222-370 (370)
166 PLN03076 ARF guanine nucleotid 92.8 13 0.00029 50.6 23.6 248 64-311 1071-1371(1780)
167 KOG2137 Protein kinase [Signal 92.8 2.6 5.7E-05 51.7 15.8 172 36-217 345-519 (700)
168 PF03224 V-ATPase_H_N: V-ATPas 92.7 1.2 2.7E-05 49.3 12.3 217 77-305 57-303 (312)
169 PF08064 UME: UME (NUC010) dom 92.7 1.3 2.8E-05 42.2 10.7 86 206-293 11-102 (107)
170 KOG2842 Interferon-related pro 92.6 5.3 0.00012 46.1 17.1 209 91-301 72-303 (427)
171 KOG4535 HEAT and armadillo rep 92.4 1.2 2.6E-05 52.4 11.9 205 88-292 400-622 (728)
172 KOG1949 Uncharacterized conser 92.3 4.7 0.0001 49.5 16.8 155 77-236 172-332 (1005)
173 PF13001 Ecm29: Proteasome sta 92.3 6.7 0.00015 46.8 18.4 201 34-281 213-449 (501)
174 PF01347 Vitellogenin_N: Lipop 92.1 6.6 0.00014 47.3 18.4 215 62-311 349-584 (618)
175 PF14664 RICTOR_N: Rapamycin-i 92.1 23 0.00049 41.0 21.8 212 53-277 37-271 (371)
176 PF08767 CRM1_C: CRM1 C termin 92.0 25 0.00054 39.7 23.0 142 53-195 88-248 (319)
177 PF03378 CAS_CSE1: CAS/CSE pro 91.9 19 0.00041 42.5 21.2 241 38-285 24-283 (435)
178 PF14225 MOR2-PAG1_C: Cell mor 91.9 22 0.00047 39.3 20.4 186 117-320 61-255 (262)
179 PF08389 Xpo1: Exportin 1-like 91.8 0.37 8E-06 46.2 6.1 121 60-189 7-148 (148)
180 PF05804 KAP: Kinesin-associat 91.7 18 0.00038 45.3 21.4 149 161-315 486-648 (708)
181 KOG1243 Protein kinase [Genera 91.4 0.33 7.1E-06 58.9 6.3 217 48-278 298-518 (690)
182 COG5095 TAF6 Transcription ini 91.2 21 0.00045 40.5 19.1 84 114-201 271-367 (450)
183 PF08506 Cse1: Cse1; InterPro 91.1 9.1 0.0002 44.1 17.2 165 99-270 162-370 (370)
184 PF03224 V-ATPase_H_N: V-ATPas 91.0 2.1 4.5E-05 47.5 11.7 184 42-235 57-269 (312)
185 KOG2021 Nuclear mRNA export fa 90.9 21 0.00045 44.6 20.2 219 89-320 450-765 (980)
186 KOG1837 Uncharacterized conser 90.9 10 0.00022 50.2 18.7 222 57-284 1365-1620(1621)
187 PF12397 U3snoRNP10: U3 small 90.8 4.3 9.3E-05 38.8 12.2 72 116-196 2-76 (121)
188 KOG0413 Uncharacterized conser 90.6 2.6 5.7E-05 53.0 12.7 126 57-195 947-1074(1529)
189 cd00256 VATPase_H VATPase_H, r 90.6 43 0.00092 39.7 23.8 167 40-217 53-239 (429)
190 KOG2549 Transcription initiati 90.4 15 0.00032 44.3 18.2 183 41-234 208-421 (576)
191 KOG1525 Sister chromatid cohes 90.3 62 0.0013 43.1 25.1 155 144-306 164-319 (1266)
192 PF12530 DUF3730: Protein of u 89.9 31 0.00067 37.1 20.7 189 89-298 11-214 (234)
193 PF12765 Cohesin_HEAT: HEAT re 89.9 0.39 8.5E-06 38.5 3.5 41 102-144 2-42 (42)
194 PF01603 B56: Protein phosphat 89.6 48 0.001 38.7 24.3 218 90-317 101-324 (409)
195 KOG0168 Putative ubiquitin fus 89.6 30 0.00066 43.7 20.3 222 53-282 180-420 (1051)
196 KOG4413 26S proteasome regulat 89.5 21 0.00045 40.9 17.5 178 93-278 54-246 (524)
197 KOG2062 26S proteasome regulat 89.5 4 8.7E-05 50.3 12.9 163 77-266 520-687 (929)
198 PF08623 TIP120: TATA-binding 89.5 1.9 4.1E-05 44.6 9.0 98 113-217 2-117 (169)
199 smart00802 UME Domain in UVSB 89.3 2.9 6.2E-05 40.2 9.5 88 204-293 9-102 (107)
200 KOG0168 Putative ubiquitin fus 89.3 24 0.00052 44.6 19.2 171 53-234 224-412 (1051)
201 KOG1822 Uncharacterized conser 89.3 31 0.00066 46.9 21.1 203 82-289 879-1107(2067)
202 KOG0891 DNA-dependent protein 89.1 9.8 0.00021 52.8 17.5 263 41-318 94-371 (2341)
203 COG5218 YCG1 Chromosome conden 89.1 28 0.0006 42.6 19.0 143 85-233 17-159 (885)
204 KOG1077 Vesicle coat complex A 89.1 39 0.00085 42.1 20.5 226 81-321 151-400 (938)
205 PF01603 B56: Protein phosphat 89.0 37 0.00081 39.6 20.1 106 177-283 267-378 (409)
206 PLN03076 ARF guanine nucleotid 88.9 1.1E+02 0.0025 42.2 27.8 256 57-318 1153-1488(1780)
207 PF14500 MMS19_N: Dos2-interac 88.9 13 0.00029 40.8 15.6 147 171-322 5-156 (262)
208 KOG0889 Histone acetyltransfer 88.4 11 0.00024 53.5 17.0 274 36-309 977-1299(3550)
209 KOG1243 Protein kinase [Genera 88.4 3.6 7.7E-05 50.4 11.5 187 115-313 325-512 (690)
210 KOG1517 Guanine nucleotide bin 88.0 12 0.00025 48.1 15.7 105 89-196 567-673 (1387)
211 PF12231 Rif1_N: Rap1-interact 87.5 61 0.0013 37.3 22.9 254 53-319 5-303 (372)
212 PF05804 KAP: Kinesin-associat 87.3 13 0.00028 46.4 15.8 118 99-221 269-387 (708)
213 PF10363 DUF2435: Protein of u 87.3 3.6 7.8E-05 38.4 8.6 75 44-118 4-82 (92)
214 KOG1077 Vesicle coat complex A 87.3 90 0.002 39.1 30.9 159 25-195 267-434 (938)
215 COG5656 SXM1 Importin, protein 87.2 94 0.002 39.2 22.9 244 57-304 476-789 (970)
216 COG5116 RPN2 26S proteasome re 86.1 9.3 0.0002 46.2 12.8 114 88-220 561-676 (926)
217 KOG0567 HEAT repeat-containing 86.0 4.8 0.0001 44.5 9.9 63 74-148 217-279 (289)
218 KOG1949 Uncharacterized conser 85.7 5.1 0.00011 49.2 10.7 152 123-276 177-332 (1005)
219 COG5101 CRM1 Importin beta-rel 84.9 13 0.00029 45.4 13.4 117 114-235 523-648 (1053)
220 KOG4524 Uncharacterized conser 84.8 77 0.0017 40.8 20.4 216 99-319 568-876 (1014)
221 KOG1293 Proteins containing ar 84.5 61 0.0013 40.0 18.8 143 44-196 380-535 (678)
222 PF11865 DUF3385: Domain of un 84.4 7.5 0.00016 39.5 10.0 146 118-277 8-159 (160)
223 KOG1293 Proteins containing ar 84.3 22 0.00047 43.7 15.1 153 116-275 375-533 (678)
224 PF00514 Arm: Armadillo/beta-c 84.1 1.5 3.3E-05 34.1 3.8 29 121-149 13-41 (41)
225 KOG2062 26S proteasome regulat 84.1 8.2 0.00018 47.8 11.5 156 123-301 522-679 (929)
226 PF11919 DUF3437: Domain of un 83.9 1.7 3.6E-05 40.6 4.6 55 94-149 4-58 (90)
227 cd00197 VHS_ENTH_ANTH VHS, ENT 83.9 23 0.00049 33.6 12.4 75 241-315 32-114 (115)
228 PF08623 TIP120: TATA-binding 83.6 8.7 0.00019 39.9 10.1 110 56-169 42-165 (169)
229 PF05327 RRN3: RNA polymerase 83.6 27 0.00058 42.5 15.8 144 58-214 53-213 (563)
230 KOG1048 Neural adherens juncti 83.4 40 0.00086 42.2 17.0 265 38-320 387-691 (717)
231 KOG1058 Vesicle coat complex C 83.3 47 0.001 41.7 17.3 176 37-221 276-452 (948)
232 KOG0413 Uncharacterized conser 83.1 28 0.00061 44.6 15.5 147 93-254 945-1094(1529)
233 COG5116 RPN2 26S proteasome re 82.7 5.5 0.00012 48.0 9.2 155 124-301 520-676 (926)
234 PF11864 DUF3384: Domain of un 82.1 1.2E+02 0.0025 36.1 22.1 213 57-275 6-244 (464)
235 PF12830 Nipped-B_C: Sister ch 81.9 53 0.0012 34.1 15.3 71 77-151 6-76 (187)
236 COG5098 Chromosome condensatio 79.9 9.5 0.00021 47.0 9.9 130 177-320 908-1038(1128)
237 COG5218 YCG1 Chromosome conden 79.8 19 0.00041 43.9 12.2 116 203-320 46-165 (885)
238 PF04510 DUF577: Family of unk 79.8 59 0.0013 34.1 14.3 92 39-134 2-98 (174)
239 KOG2149 Uncharacterized conser 77.9 31 0.00067 40.2 12.9 137 164-300 57-199 (393)
240 PF05536 Neurochondrin: Neuroc 77.2 1.8E+02 0.0039 35.4 19.8 178 135-318 72-263 (543)
241 COG5098 Chromosome condensatio 76.8 1.6E+02 0.0035 37.1 18.6 108 206-317 299-413 (1128)
242 PF14631 FancD2: Fanconi anaem 76.8 3E+02 0.0064 37.6 23.4 223 39-275 206-464 (1426)
243 KOG3961 Uncharacterized conser 76.4 18 0.00038 39.2 9.7 110 206-318 114-241 (262)
244 KOG1525 Sister chromatid cohes 75.9 96 0.0021 41.4 17.9 206 57-276 201-406 (1266)
245 PF12074 DUF3554: Domain of un 75.5 1.5E+02 0.0031 33.4 20.7 210 41-255 19-253 (339)
246 PF12830 Nipped-B_C: Sister ch 75.4 31 0.00066 35.9 11.2 77 203-282 5-81 (187)
247 KOG3961 Uncharacterized conser 74.5 9.2 0.0002 41.3 7.0 93 77-174 112-204 (262)
248 KOG1837 Uncharacterized conser 73.9 19 0.00041 47.9 10.8 97 54-151 1517-1613(1621)
249 PF12333 Ipi1_N: Rix1 complex 73.6 18 0.00038 34.3 8.1 63 112-177 3-65 (102)
250 KOG4524 Uncharacterized conser 73.5 2.9E+02 0.0063 36.0 21.6 96 203-298 800-900 (1014)
251 PF11698 V-ATPase_H_C: V-ATPas 72.4 6.2 0.00013 38.8 4.9 69 38-108 41-115 (119)
252 PF13001 Ecm29: Proteasome sta 71.9 1.1E+02 0.0024 36.6 16.2 153 77-234 317-487 (501)
253 KOG0946 ER-Golgi vesicle-tethe 71.0 50 0.0011 41.7 12.9 219 50-273 72-344 (970)
254 PF11698 V-ATPase_H_C: V-ATPas 70.7 15 0.00033 36.1 7.1 69 121-194 44-115 (119)
255 PF10350 DUF2428: Putative dea 69.9 1.3E+02 0.0027 33.0 14.8 131 161-291 92-244 (255)
256 PF12054 DUF3535: Domain of un 69.8 93 0.002 36.9 14.7 96 135-237 102-210 (441)
257 PF00514 Arm: Armadillo/beta-c 69.7 8.8 0.00019 29.8 4.4 28 247-274 13-40 (41)
258 PF12333 Ipi1_N: Rix1 complex 69.7 11 0.00024 35.6 5.9 57 76-132 8-65 (102)
259 PF14868 DUF4487: Domain of un 69.6 2.6E+02 0.0057 34.4 18.5 76 203-278 476-555 (559)
260 PF02854 MIF4G: MIF4G domain; 69.2 1.2E+02 0.0025 30.4 13.5 83 43-127 2-85 (209)
261 KOG4199 Uncharacterized conser 68.7 2.1E+02 0.0046 33.3 16.2 178 50-233 251-442 (461)
262 PF11701 UNC45-central: Myosin 68.2 62 0.0013 32.8 11.2 125 74-217 2-139 (157)
263 PF04510 DUF577: Family of unk 67.0 21 0.00045 37.4 7.5 130 119-255 2-139 (174)
264 KOG0891 DNA-dependent protein 66.9 1.8E+02 0.004 41.3 18.1 199 121-320 6-208 (2341)
265 PF05918 API5: Apoptosis inhib 66.8 28 0.00061 42.4 9.7 29 516-544 373-401 (556)
266 PF11935 DUF3453: Domain of un 66.8 1.9E+02 0.0042 31.3 18.6 182 89-293 3-210 (239)
267 KOG0889 Histone acetyltransfer 66.1 6.2E+02 0.014 37.6 22.6 72 136-208 1249-1320(3550)
268 PF04003 Utp12: Dip2/Utp12 Fam 65.7 30 0.00064 32.3 7.8 88 62-149 15-105 (110)
269 KOG3678 SARM protein (with ste 65.4 1.2E+02 0.0027 36.4 14.0 178 92-284 277-461 (832)
270 PF08569 Mo25: Mo25-like; Int 65.1 1.4E+02 0.0031 34.2 14.5 255 36-318 10-282 (335)
271 PF07571 DUF1546: Protein of u 64.8 30 0.00065 32.2 7.6 62 90-151 17-80 (92)
272 PF14631 FancD2: Fanconi anaem 62.1 1.1E+02 0.0024 41.5 14.6 88 102-196 417-504 (1426)
273 cd03572 ENTH_epsin_related ENT 61.8 97 0.0021 30.7 10.8 71 243-313 35-116 (122)
274 smart00185 ARM Armadillo/beta- 61.7 13 0.00029 27.8 3.9 28 247-274 13-40 (41)
275 PF14225 MOR2-PAG1_C: Cell mor 61.5 2.6E+02 0.0057 31.0 17.1 155 55-221 76-243 (262)
276 KOG2973 Uncharacterized conser 61.0 31 0.00068 39.2 8.1 65 84-151 8-73 (353)
277 PF01417 ENTH: ENTH domain; I 60.7 1.5E+02 0.0032 28.7 11.8 101 210-314 7-119 (125)
278 PF12397 U3snoRNP10: U3 small 60.5 44 0.00096 31.9 8.1 74 202-277 2-76 (121)
279 KOG4541 Nuclear transport rece 58.7 1.3E+02 0.0027 36.9 12.7 126 93-222 571-704 (748)
280 smart00185 ARM Armadillo/beta- 58.5 13 0.00028 27.9 3.3 28 121-148 13-40 (41)
281 PF12612 TFCD_C: Tubulin foldi 57.5 2E+02 0.0044 29.9 13.0 133 163-299 5-164 (193)
282 KOG1848 Uncharacterized conser 57.5 1.4E+02 0.0031 40.0 13.7 117 166-284 887-1035(1610)
283 cd05394 RasGAP_RASA2 RASA2 (or 57.1 1.3E+02 0.0029 34.3 12.2 58 111-175 48-107 (313)
284 PF11701 UNC45-central: Myosin 56.6 33 0.00071 34.7 6.8 132 132-271 17-155 (157)
285 PRK14707 hypothetical protein; 56.5 8.2E+02 0.018 35.1 21.0 143 46-198 547-701 (2710)
286 KOG2141 Protein involved in hi 56.4 5.3E+02 0.011 32.8 19.4 54 31-85 309-362 (822)
287 COG5657 CSE1 CAS/CSE protein i 56.0 5.8E+02 0.013 33.2 21.9 138 49-197 12-155 (947)
288 PF08161 NUC173: NUC173 domain 55.5 1.1E+02 0.0023 32.5 10.7 61 177-237 12-73 (198)
289 PF04118 Dopey_N: Dopey, N-ter 55.2 3.7E+02 0.0079 30.7 15.8 135 183-317 29-168 (307)
290 cd03561 VHS VHS domain family; 55.1 85 0.0018 30.8 9.3 77 242-318 33-114 (133)
291 PF12612 TFCD_C: Tubulin foldi 55.1 1.1E+02 0.0023 32.0 10.5 136 93-237 21-160 (193)
292 PF12783 Sec7_N: Guanine nucle 54.9 1E+02 0.0022 31.1 10.1 94 56-149 37-146 (168)
293 PF00790 VHS: VHS domain; Int 54.6 67 0.0015 31.7 8.5 78 241-318 37-120 (140)
294 KOG0946 ER-Golgi vesicle-tethe 53.9 4.5E+02 0.0097 33.8 16.5 175 118-299 20-225 (970)
295 PF11707 Npa1: Ribosome 60S bi 52.5 3.9E+02 0.0085 30.2 20.1 233 47-293 31-317 (330)
296 KOG2081 Nuclear transport regu 52.0 5.4E+02 0.012 31.7 17.6 160 115-290 335-510 (559)
297 PRK09169 hypothetical protein; 51.6 4.8E+02 0.01 37.2 17.7 224 44-293 671-919 (2316)
298 PF07539 DRIM: Down-regulated 51.5 1.5E+02 0.0033 29.9 10.4 79 164-255 16-97 (141)
299 cd03572 ENTH_epsin_related ENT 51.2 1.2E+02 0.0027 30.0 9.5 91 57-148 17-118 (122)
300 PRK14707 hypothetical protein; 51.1 8.3E+02 0.018 35.1 19.2 144 44-197 713-868 (2710)
301 COG5234 CIN1 Beta-tubulin fold 51.0 2.2E+02 0.0047 36.0 13.2 238 54-315 475-757 (993)
302 KOG1851 Uncharacterized conser 50.9 6.3E+02 0.014 34.8 18.0 157 114-279 1519-1682(1710)
303 PF09324 DUF1981: Domain of un 50.1 1.1E+02 0.0023 28.2 8.4 67 245-311 16-83 (86)
304 KOG2020 Nuclear transport rece 48.7 8E+02 0.017 32.7 21.3 190 43-236 47-259 (1041)
305 PF14664 RICTOR_N: Rapamycin-i 48.3 3.4E+02 0.0073 31.6 14.0 150 161-318 21-178 (371)
306 PF03542 Tuberin: Tuberin; In 48.3 5E+02 0.011 30.2 16.6 94 133-235 210-303 (356)
307 PF07571 DUF1546: Protein of u 47.5 31 0.00068 32.1 4.6 48 256-303 16-63 (92)
308 PF14222 MOR2-PAG1_N: Cell mor 47.2 4.8E+02 0.01 32.0 15.7 166 99-274 67-248 (552)
309 PF12726 SEN1_N: SEN1 N termin 47.1 6.9E+02 0.015 31.5 21.3 115 203-320 438-554 (727)
310 PF06685 DUF1186: Protein of u 45.9 4.6E+02 0.0099 29.1 15.0 67 109-180 92-168 (249)
311 PF11864 DUF3384: Domain of un 45.4 5.9E+02 0.013 30.2 25.2 151 36-194 172-330 (464)
312 KOG3613 Dopey and related pred 45.1 3.9E+02 0.0085 36.9 15.1 197 115-320 1392-1622(1749)
313 cd05135 RasGAP_RASAL Ras GTPas 44.9 5.4E+02 0.012 29.6 16.6 71 96-174 38-110 (333)
314 PF08146 BP28CT: BP28CT (NUC21 44.8 2.3E+02 0.0049 28.9 10.6 77 57-133 37-121 (153)
315 PF03810 IBN_N: Importin-beta 44.5 1.8E+02 0.0038 25.0 8.6 48 62-112 2-49 (77)
316 KOG4500 Rho/Rac GTPase guanine 44.4 6.6E+02 0.014 30.5 17.5 185 41-234 224-430 (604)
317 cd05134 RasGAP_RASA3 RASA3 (or 44.0 3.2E+02 0.0068 31.3 12.6 57 112-175 49-107 (310)
318 PF11919 DUF3437: Domain of un 43.4 33 0.00071 32.2 4.1 57 261-318 4-60 (90)
319 cd03568 VHS_STAM VHS domain fa 43.3 99 0.0021 31.2 7.7 73 163-235 35-110 (144)
320 KOG0803 Predicted E3 ubiquitin 42.5 1.3E+02 0.0029 40.3 10.6 101 211-311 46-148 (1312)
321 KOG2011 Sister chromatid cohes 42.3 9.8E+02 0.021 31.9 18.1 168 96-274 262-434 (1048)
322 KOG1877 Putative transmembrane 42.0 1.6E+02 0.0035 37.6 10.7 167 77-253 15-200 (819)
323 PF12765 Cohesin_HEAT: HEAT re 41.4 32 0.00069 27.6 3.2 26 245-270 17-42 (42)
324 PF08713 DNA_alkylation: DNA a 41.2 23 0.0005 36.5 3.0 58 88-151 129-186 (213)
325 PF06685 DUF1186: Protein of u 40.6 5.5E+02 0.012 28.5 16.0 162 60-256 17-195 (249)
326 PF08161 NUC173: NUC173 domain 40.5 4.8E+02 0.01 27.8 13.0 59 93-151 14-72 (198)
327 cd06561 AlkD_like A new struct 40.3 86 0.0019 31.9 7.0 59 88-151 114-172 (197)
328 KOG2973 Uncharacterized conser 39.0 1.3E+02 0.0028 34.6 8.4 110 167-278 5-114 (353)
329 cd03568 VHS_STAM VHS domain fa 38.8 3E+02 0.0066 27.7 10.4 74 243-316 34-110 (144)
330 PF14837 INTS5_N: Integrator c 37.9 5.7E+02 0.012 27.9 15.2 19 239-257 178-196 (213)
331 cd03569 VHS_Hrs_Vps27p VHS dom 37.8 2.4E+02 0.0052 28.3 9.5 72 243-317 38-115 (142)
332 PF04388 Hamartin: Hamartin pr 37.8 4.1E+02 0.0089 33.4 13.4 96 115-215 65-161 (668)
333 KOG4500 Rho/Rac GTPase guanine 37.6 2.2E+02 0.0048 34.1 10.3 137 80-221 316-460 (604)
334 smart00543 MIF4G Middle domain 37.5 4.3E+02 0.0094 26.4 17.3 80 44-130 3-82 (200)
335 KOG2122 Beta-catenin-binding p 36.9 8.2E+02 0.018 34.0 15.7 50 226-278 508-562 (2195)
336 PF11841 DUF3361: Domain of un 36.8 3E+02 0.0066 28.6 10.1 96 138-234 32-130 (160)
337 cd03569 VHS_Hrs_Vps27p VHS dom 36.7 1.4E+02 0.0031 29.9 7.7 73 163-235 39-114 (142)
338 PF14961 BROMI: Broad-minded p 36.5 5.2E+02 0.011 34.7 14.1 66 80-148 162-230 (1296)
339 KOG1848 Uncharacterized conser 36.1 2.5E+02 0.0054 37.9 11.2 117 79-195 997-1133(1610)
340 PF10805 DUF2730: Protein of u 35.6 59 0.0013 31.1 4.6 49 520-568 45-98 (106)
341 PF13374 TPR_10: Tetratricopep 35.4 62 0.0013 24.0 3.9 36 809-844 3-39 (42)
342 COG5101 CRM1 Importin beta-rel 35.2 1E+03 0.023 30.2 22.9 201 32-237 38-263 (1053)
343 COG5537 IRR1 Cohesin [Cell div 34.7 1E+03 0.022 29.9 15.6 69 81-151 277-345 (740)
344 PF06371 Drf_GBD: Diaphanous G 33.7 59 0.0013 32.8 4.5 55 219-274 129-186 (187)
345 PF08713 DNA_alkylation: DNA a 33.4 1.1E+02 0.0024 31.4 6.6 132 53-205 63-195 (213)
346 KOG2213 Apoptosis inhibitor 5/ 33.3 9.1E+02 0.02 28.9 17.6 218 56-284 76-323 (460)
347 COG5314 Conjugal transfer/entr 32.9 1.1E+02 0.0025 33.5 6.6 57 514-570 41-104 (252)
348 KOG1851 Uncharacterized conser 32.7 1E+03 0.023 33.0 16.0 175 121-305 1184-1378(1710)
349 PF12243 CTK3: CTD kinase subu 32.6 3.9E+02 0.0085 27.1 10.0 79 38-122 3-86 (139)
350 cd00256 VATPase_H VATPase_H, r 32.3 9.4E+02 0.02 28.8 20.4 207 92-305 67-297 (429)
351 COG5543 Uncharacterized conser 31.8 7.1E+02 0.015 32.7 13.7 176 93-274 653-843 (1400)
352 PF09759 Atx10homo_assoc: Spin 31.2 1.2E+02 0.0025 29.3 5.7 61 41-113 2-64 (102)
353 PF07539 DRIM: Down-regulated 31.1 1E+02 0.0023 31.0 5.7 44 246-293 17-61 (141)
354 PHA01351 putative minor struct 31.1 7.7E+02 0.017 31.4 13.5 33 185-217 120-152 (1070)
355 COG5657 CSE1 CAS/CSE protein i 30.4 1.4E+03 0.03 30.1 19.2 260 31-301 483-764 (947)
356 cd03567 VHS_GGA VHS domain fam 30.3 2E+02 0.0044 28.9 7.6 72 164-235 37-116 (139)
357 KOG1048 Neural adherens juncti 30.1 1.6E+02 0.0034 37.1 8.0 135 76-218 519-666 (717)
358 PF13424 TPR_12: Tetratricopep 29.9 1.1E+02 0.0024 26.1 5.0 40 806-845 3-42 (78)
359 cd00872 PI3Ka_I Phosphoinositi 29.8 3.5E+02 0.0075 28.3 9.4 86 64-154 58-148 (171)
360 smart00567 EZ_HEAT E-Z type HE 29.8 56 0.0012 23.6 2.7 30 93-132 1-30 (30)
361 PF11640 TAN: Telomere-length 29.7 5.1E+02 0.011 26.1 10.4 103 46-148 7-136 (155)
362 cd03567 VHS_GGA VHS domain fam 29.7 4.5E+02 0.0097 26.5 9.9 72 244-316 36-116 (139)
363 cd00197 VHS_ENTH_ANTH VHS, ENT 29.6 4.8E+02 0.01 24.5 10.6 73 74-147 32-113 (115)
364 PF09324 DUF1981: Domain of un 29.5 2.5E+02 0.0053 25.8 7.4 64 77-143 19-82 (86)
365 PF14222 MOR2-PAG1_N: Cell mor 29.4 1.2E+03 0.025 28.9 18.8 190 115-317 30-252 (552)
366 PF10441 Urb2: Urb2/Npa2 famil 29.4 7.2E+02 0.016 26.5 12.2 58 117-175 27-92 (223)
367 KOG2059 Ras GTPase-activating 29.2 1.9E+02 0.0041 36.4 8.3 94 73-175 282-390 (800)
368 KOG3723 PH domain protein Melt 28.4 1E+03 0.022 29.7 13.8 68 74-145 194-262 (851)
369 PF04388 Hamartin: Hamartin pr 28.1 1.9E+02 0.0042 36.1 8.5 87 78-174 69-157 (668)
370 COG3416 Uncharacterized protei 27.9 1.3E+02 0.0029 32.5 6.0 31 604-634 84-115 (233)
371 smart00288 VHS Domain present 27.8 5.4E+02 0.012 25.3 10.0 74 243-316 34-111 (133)
372 PF08146 BP28CT: BP28CT (NUC21 27.6 4.1E+02 0.009 27.0 9.3 97 180-276 36-148 (153)
373 PF07719 TPR_2: Tetratricopept 27.3 87 0.0019 22.3 3.4 30 809-838 2-31 (34)
374 PF14668 RICTOR_V: Rapamycin-i 27.2 1.3E+02 0.0028 27.3 5.0 55 95-151 3-60 (73)
375 PF12531 DUF3731: DNA-K relate 26.5 1.7E+02 0.0036 32.5 6.6 111 95-212 97-211 (249)
376 KOG1810 Cell cycle-associated 26.5 6.2E+02 0.013 34.2 12.3 182 93-275 659-858 (1417)
377 PF14911 MMS22L_C: S-phase gen 25.6 1.2E+03 0.025 27.6 19.0 152 92-272 201-371 (373)
378 PF02465 FliD_N: Flagellar hoo 25.5 1.8E+02 0.004 26.9 6.0 53 518-570 5-57 (99)
379 PF08625 Utp13: Utp13 specific 25.0 1.7E+02 0.0036 29.6 5.9 85 44-130 28-121 (141)
380 KOG3613 Dopey and related pred 24.2 5.1E+02 0.011 35.9 11.3 132 39-176 1435-1583(1749)
381 KOG1988 Uncharacterized conser 24.1 1.7E+03 0.037 29.2 16.4 206 84-313 68-278 (970)
382 PF12783 Sec7_N: Guanine nucle 23.7 7.6E+02 0.016 24.8 12.4 96 220-318 36-145 (168)
383 cd03565 VHS_Tom1 VHS domain fa 23.7 6.2E+02 0.013 25.4 9.7 74 243-317 35-116 (141)
384 KOG2011 Sister chromatid cohes 23.5 1E+03 0.022 31.7 13.5 115 76-194 279-400 (1048)
385 PF04003 Utp12: Dip2/Utp12 Fam 23.0 1.5E+02 0.0032 27.6 4.9 76 784-863 2-84 (110)
386 PF11707 Npa1: Ribosome 60S bi 22.8 1.1E+03 0.025 26.6 16.6 187 114-320 21-238 (330)
387 PF14228 MOR2-PAG1_mid: Cell m 21.9 1.5E+03 0.032 30.6 14.8 57 97-153 518-576 (1120)
388 PF08095 Toxin_25: Hefutoxin f 21.3 41 0.00089 23.7 0.5 17 699-716 2-18 (22)
389 KOG2213 Apoptosis inhibitor 5/ 21.1 1.5E+03 0.032 27.2 15.4 64 57-130 40-106 (460)
390 PF10046 BLOC1_2: Biogenesis o 20.7 2.8E+02 0.0061 26.2 6.2 46 515-568 40-85 (99)
391 PF03542 Tuberin: Tuberin; In 20.4 1.4E+03 0.03 26.7 17.1 130 34-175 135-282 (356)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-30 Score=292.93 Aligned_cols=258 Identities=20% Similarity=0.244 Sum_probs=230.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V 136 (898)
.|+|.++.||.++.-++.+.++.+|++|.+...+++|.+|++++++||+|||||.+.+.||||.++|+++..|.|..+.|
T Consensus 371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 79999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002638 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216 (898)
Q Consensus 137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLk 216 (898)
|.++|||+++++.|++... ..+++..+|.+|+..+.+.||.||+|||+|+|.+.|++.....|||..|+..|.+.++
T Consensus 451 RsITCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 451 RSITCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred eeeeeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999997643 3467777888888888999999999999999999999999889999999999999998
Q ss_pred CCchhhHH--HHHHHHHHHH-hcc-ccC-cccHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHHHHhcchHHHhhH---
Q 002638 217 NQNFMAKA--SLLPVVGSLS-QVG-AIA-PQSLEPLLQSIHEC---LGSTDWATRKAAADALSALALHSSNLVIDGA--- 285 (898)
Q Consensus 217 s~~~kaK~--alL~aIgSLA-~vG-a~~-~pyld~lLp~L~e~---LsddDW~vRKaA~EaL~sLA~avge~L~Py~--- 285 (898)
.||.|+ .+|++||++| .+| +.. +.|++.+||+|.+. |+|+|..+ ..-.|||++||.++|+.|.||.
T Consensus 528 --kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~V 604 (885)
T KOG2023|consen 528 --KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPV 604 (885)
T ss_pred --HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHH
Confidence 899998 7999999999 488 443 88999999999975 78877554 5679999999999999999984
Q ss_pred -HHHHHHHHhhhc-------C--CChhhHHHHHHHHHHHHHhhcC
Q 002638 286 -TSTLTVLEACRF-------D--KIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 286 -~~~I~~LE~~Rf-------D--KvKpVRD~A~eALelWK~La~~ 320 (898)
.+|+.+++.|.+ | -+-|.||+++.+|++..+++..
T Consensus 605 y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaeg 649 (885)
T KOG2023|consen 605 YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEG 649 (885)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHH
Confidence 777888874422 1 1245889999999999999843
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.8e-27 Score=280.45 Aligned_cols=258 Identities=17% Similarity=0.201 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChH
Q 002638 57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG 135 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~ 135 (898)
+...|.+.||.++..|+++. +++++.++....++++|..|++++++|+.++|||.+.+.++|++|+++|++.|+||+|.
T Consensus 325 ~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphpr 404 (1075)
T KOG2171|consen 325 PYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPR 404 (1075)
T ss_pred cHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 88999999999999999877 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhc-CCCCchhHHHHHH-HH
Q 002638 136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECA-SDPPVVAFQKLCA-RI 211 (898)
Q Consensus 136 VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL--~eqnk~VQegAasALAkiIE~a-~d~~~~yL~~LlP-RL 211 (898)
||.|||++||+++..+ .+. ...++.+.++|++-.+ ..++++||..||.||-.+.|++ ++.+.+||+.||. +|
T Consensus 405 Vr~AA~naigQ~stdl-~p~---iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 405 VRYAALNAIGQMSTDL-QPE---IQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred HHHHHHHHHHhhhhhh-cHH---HHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999 332 2356666776555444 3469999999999999999886 5667799999999 55
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002638 212 CKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGS----TDWATRKAAADALSALALHSS-NLVIDGA 285 (898)
Q Consensus 212 lkLLks~~~kaK~alL~aIgSLA~v-Ga~~~pyld~lLp~L~e~Lsd----dDW~vRKaA~EaL~sLA~avg-e~L~Py~ 285 (898)
..++.+.+..+|..++.+|+|+|.+ +..|.+|++.+||.|..+|.. +...+|..++||++.|+.++| +.|.|+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a 560 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA 560 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence 5555667788999999999999864 478999999999999999875 347799999999999999999 9999999
Q ss_pred HHHHHHHHhh---hcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638 286 TSTLTVLEAC---RFDKIKPVRDSMNEALQLWKKIAGKV 321 (898)
Q Consensus 286 ~~~I~~LE~~---RfDKvKpVRD~A~eALelWK~La~~~ 321 (898)
.++|+.+... -.|.+.+.|+ ..+.+|..+|..+
T Consensus 561 ~eliqll~~~~~~~~~~dd~~~s---y~~~~warmc~il 596 (1075)
T KOG2171|consen 561 EELIQLLLELQGSDQDDDDPLRS---YMIAFWARMCRIL 596 (1075)
T ss_pred HHHHHHHHhhcccchhhccccHH---HHHHHHHHHHHHh
Confidence 9999988655 5556676777 4899999999987
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.8e-26 Score=257.67 Aligned_cols=266 Identities=13% Similarity=0.095 Sum_probs=241.0
Q ss_pred HHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-hhhH
Q 002638 42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHV 118 (898)
Q Consensus 42 K~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I-~PhL 118 (898)
-+++.+.|... .|++|++.+...|+++-. -| +|.+||-||+....+.+-..|..|+++|++..++|...+ .+.+
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~ 88 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--FP-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVL 88 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhc--cc-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHH
Confidence 46777888666 699999999999999887 34 699999999988888999999999999999999999775 5679
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002638 119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD 198 (898)
Q Consensus 119 pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d 198 (898)
.+|.+.++++|.|+++.||.+..-.|++++... +. ..|+++|+.|.+.|..++-+.|+||+.||.|+||+..+
T Consensus 89 ~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~---~~----~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~ 161 (885)
T KOG2023|consen 89 DYIKSECLHGLGDASPLIRATVGIVITTIASTG---GL----QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ 161 (885)
T ss_pred HHHHHHHHhhccCchHHHHhhhhheeeeeeccc---cc----ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH
Confidence 999999999999999999999999988888766 32 56999999999999999999999999999999998622
Q ss_pred -----CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002638 199 -----PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272 (898)
Q Consensus 199 -----~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~s 272 (898)
.....|+.|+|||+.+++|++.++|..++.||+.++-.. +.+..+++.++..|+....|++..+||.+|.+|+.
T Consensus 162 ~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~ 241 (885)
T KOG2023|consen 162 FLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVF 241 (885)
T ss_pred HHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 223568999999999999999999999999999998655 67888999999999999999999999999999999
Q ss_pred HHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 273 LALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 273 LA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
+....++++.||+.++|+||.....|.++ ++|+||||||..++..
T Consensus 242 Llevr~dkl~phl~~IveyML~~tqd~dE---~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 242 LLEVRPDKLVPHLDNIVEYMLQRTQDVDE---NVALEACEFWLALAEQ 286 (885)
T ss_pred HHHhcHHhcccchHHHHHHHHHHccCcch---hHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999 8999999999999943
No 4
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.3e-12 Score=150.94 Aligned_cols=299 Identities=15% Similarity=0.131 Sum_probs=231.7
Q ss_pred CccccCCCCCCCCCcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCCh
Q 002638 16 SQGQQSSSANASRSSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKP 93 (898)
Q Consensus 16 ~~~~~~~~~~~~~~~~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~--Lp~fLs~L~es~~s~k~ 93 (898)
++.-|.++++|.++.+.....--.+.-.+.+.-+-...+-..++-|.-++-.+...+.-+. =..|+.-|.....+.++
T Consensus 109 s~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~ 188 (569)
T KOG1242|consen 109 SKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKS 188 (569)
T ss_pred cHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccch
Confidence 3445688889998777665544433333333332224444455566666666666543222 23567788877777777
Q ss_pred hhHHH-HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHH
Q 002638 94 AVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE 172 (898)
Q Consensus 94 ~vRKe-AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~e 172 (898)
..|++ ++.++..++...+....||+..++|.|+..+.|..+.||+|+.+++-++...+... -+..++++++.
T Consensus 189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-------aVK~llpsll~ 261 (569)
T KOG1242|consen 189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-------AVKLLLPSLLG 261 (569)
T ss_pred hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-------hhhHhhhhhHH
Confidence 76664 88888888888888899999999999999999999999999999999999999332 27889999999
Q ss_pred HHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc----------------
Q 002638 173 AMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV---------------- 236 (898)
Q Consensus 173 aL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~v---------------- 236 (898)
.|.+..+..-.++..-|..+.++++.+..-+++.|+|.+.+.|.+.+.++|.+.+.|+--+-.+
T Consensus 262 ~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 262 SLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA 341 (569)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 9987788888999999999999999988889999999999999999999887766654332110
Q ss_pred -c---------------ccC-----cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc--chHHHhhHHHHHHHHH
Q 002638 237 -G---------------AIA-----PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS--SNLVIDGATSTLTVLE 293 (898)
Q Consensus 237 -G---------------a~~-----~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av--ge~L~Py~~~~I~~LE 293 (898)
+ -.| .|-+..++|.|.+.|.+.+..+++.++..+..++..+ +..+.||++.+++-++
T Consensus 342 l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 342 LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 0 001 3556677777888888888899999999999999999 4789999999999999
Q ss_pred hhhcCCChhhHHHHHHHH-HHHHHhhcCC
Q 002638 294 ACRFDKIKPVRDSMNEAL-QLWKKIAGKV 321 (898)
Q Consensus 294 ~~RfDKvKpVRD~A~eAL-elWK~La~~~ 321 (898)
..-.|-++.||.++..|| .+.+.+.-++
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVS 450 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999 6666666554
No 5
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.4e-11 Score=144.41 Aligned_cols=278 Identities=16% Similarity=0.196 Sum_probs=213.9
Q ss_pred hhHhHHHHHHHHHHHHHcCC---Chh---HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002638 34 SHLAMVEMKQKILTSLSKLA---DRD---THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVC 107 (898)
Q Consensus 34 ~~~~~~eLK~rll~~L~KLs---DrD---T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA 107 (898)
...++..+...|+..|.|-+ |.| ..+.|-.+|..+++....+-++..|++|.+++++++|..|.+++.+||-+-
T Consensus 313 a~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl 392 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSIL 392 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhh
Confidence 34566788888899999862 222 788888999999998877779999999999999999999999999999999
Q ss_pred HHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc-------------------------------
Q 002638 108 ELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK------------------------------- 155 (898)
Q Consensus 108 Eg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~------------------------------- 155 (898)
+|-. +.+.|+.+.-+|.|++.+.||.-.||+++.|++|+++..+....
T Consensus 393 ~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf 472 (859)
T KOG1241|consen 393 EGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAF 472 (859)
T ss_pred cCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHH
Confidence 9866 44899999999999999999999999999999999987764320
Q ss_pred -----------ccC-----Cch----------------------------------------------------------
Q 002638 156 -----------EEN-----NGT---------------------------------------------------------- 161 (898)
Q Consensus 156 -----------~e~-----~~~---------------------------------------------------------- 161 (898)
... ...
T Consensus 473 ~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~ 552 (859)
T KOG1241|consen 473 ISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLD 552 (859)
T ss_pred HHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 000 000
Q ss_pred ----------------------------------------hHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCC
Q 002638 162 ----------------------------------------VVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPP 200 (898)
Q Consensus 162 ----------------------------------------~~~~lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~d~~ 200 (898)
....++..++..|.. ..-.|++-|++|..++++..+...
T Consensus 553 q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F 632 (859)
T KOG1241|consen 553 QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGF 632 (859)
T ss_pred HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhH
Confidence 001111111111111 122356666677777777666666
Q ss_pred chhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHh
Q 002638 201 VVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALH 276 (898)
Q Consensus 201 ~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA~v-Ga~~~pyld~lLp~L~e~Lsdd--DW~vRKaA~EaL~sLA~a 276 (898)
..|.+.+.|.|..-|++ ..|++-.+++.++|-++.+ ++.+.||.+.+|..|.++|+++ +..++-+.+-++|-||.+
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 77888899999999955 5788888999999999864 5789999999999999999996 466888889999999999
Q ss_pred cchHHHhhHHHHHHHHHhh---hcCC--------ChhhHHHHHHHH
Q 002638 277 SSNLVIDGATSTLTVLEAC---RFDK--------IKPVRDSMNEAL 311 (898)
Q Consensus 277 vge~L~Py~~~~I~~LE~~---RfDK--------vKpVRD~A~eAL 311 (898)
+|..|.||+..++..|+.. ..|+ +..+|+.+++|.
T Consensus 713 Ig~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay 758 (859)
T KOG1241|consen 713 IGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY 758 (859)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999988743 3443 244788755553
No 6
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.43 E-value=8.7e-12 Score=144.97 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHhcCCCCC---------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHH
Q 002638 57 THQIAIEDLEKTIQTLSQES---------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK 127 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~---------Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilr 127 (898)
-++++++..++++..|+.-+ +..+|.+++++..+. ...+..||+++...+..+.||||+|+++|++
T Consensus 732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d-----~vml~gfg~V~~~lg~r~kpylpqi~stiL~ 806 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED-----SVMLLGFGTVVNALGGRVKPYLPQICSTILW 806 (1172)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch-----hhhhhhHHHHHHHHhhccccchHHHHHHHHH
Confidence 67899999999998875322 555666666544331 2567889999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-CCchhHHH
Q 002638 128 RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-PPVVAFQK 206 (898)
Q Consensus 128 rLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d-~~~~yL~~ 206 (898)
+|+.+.+.||..+++.+++|+..+-.++. +..+..+=--|++.|++..+.|-.....||.+|+...+- ...+-+..
T Consensus 807 rLnnksa~vRqqaadlis~la~Vlktc~e---e~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 807 RLNNKSAKVRQQAADLISSLAKVLKTCGE---EKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhccH---HHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 99999999999999999999999955532 345666667899999999999998888888888876532 22355788
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS--IHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 207 LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~--L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
|+|+|.++|+|.|-|+.+.+++++|.|+.-|..+.+.-+|.--| |++.|..-...+|++|.++||.||.++|
T Consensus 884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 99999999999999999999999999997775566556665554 7788999889999999999999999999
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5.3e-11 Score=144.74 Aligned_cols=275 Identities=17% Similarity=0.232 Sum_probs=219.0
Q ss_pred HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch
Q 002638 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS 115 (898)
Q Consensus 36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~ 115 (898)
+.-..+|.+++.++.+=.....++--++.+-.|++.+-|+..|-+|.+|.+..+++++..|+.|+++|..+.+..+....
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 33456777777777666556677877888888888876668999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc----CCHhHHHHHHHHHHH
Q 002638 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAK 191 (898)
Q Consensus 116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e----qnk~VQegAasALAk 191 (898)
||+..+++.+.+++.|++..||-+++.+++.++.++-... ..-..+..++|.++..|.+ .+..+-..++.||..
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~--~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK--SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch--HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 9999999999999999998899999999999999992110 0114566777778777743 344444557777777
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcc----ccCcccHHHHHHH---------------
Q 002638 192 MVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVG----AIAPQSLEPLLQS--------------- 250 (898)
Q Consensus 192 iIE~a~d~~~~yL~~LlPRLlkLLks~--~~kaK~alL~aIgSLA~vG----a~~~pyld~lLp~--------------- 250 (898)
+.|..+..+.++|..++.-.+++.++. ...+|..+|.+|-+++... ...++|...+++.
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 777778888889999999999999886 4567888888888876431 1122333333333
Q ss_pred ----------------------------------------HHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002638 251 ----------------------------------------IHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (898)
Q Consensus 251 ----------------------------------------L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~ 290 (898)
+-.+|.+.+|.-|++|+-+|+.++...++.+.+.++.++.
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~ 392 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILP 392 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4455778899999999999999999999999999999999
Q ss_pred HHHhhhcCCChhhHHHHHHHHH
Q 002638 291 VLEACRFDKIKPVRDSMNEALQ 312 (898)
Q Consensus 291 ~LE~~RfDKvKpVRD~A~eALe 312 (898)
.....-.|.++-||-+|+-|+.
T Consensus 393 ~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 393 IVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred HHHhhcCCCCHHHHHHHHHHHH
Confidence 9999999999999998544443
No 8
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.23 E-value=1.4e-09 Score=124.60 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHcCC------ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch
Q 002638 39 VEMKQKILTSLSKLA------DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE 112 (898)
Q Consensus 39 ~eLK~rll~~L~KLs------DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd 112 (898)
-+.-..++..|.|-+ |=.....|..+|+.+++.....-+.+.|.++.+++.+++|..|++++++||-+.++-.+
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~ 399 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH
Confidence 345556777887751 22277888889999998776666999999999999999999999999999999998775
Q ss_pred h-chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc---cc-------------ccCC----------------
Q 002638 113 L-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN---GK-------------EENN---------------- 159 (898)
Q Consensus 113 ~-I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik---~~-------------~e~~---------------- 159 (898)
. +.++.++.+|.|+....|+---|.+.++|++|+|+.++.. +. ..+.
T Consensus 400 ~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 400 DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD 479 (858)
T ss_pred HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence 5 7899999999999999999999999999999999988753 10 0000
Q ss_pred ---------chhHHhhHHHHHHHHh------cC-----------------------------------------------
Q 002638 160 ---------GTVVGLFVKPLFEAMM------EQ----------------------------------------------- 177 (898)
Q Consensus 160 ---------~~~~~~lL~pL~eaL~------eq----------------------------------------------- 177 (898)
...+..|.+.++.+|. .+
T Consensus 480 h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q 559 (858)
T COG5215 480 HIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQ 559 (858)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0001111111111110 00
Q ss_pred ---------CHhHHHHHHHHHHHHHHhcC------------------------------------------CCCchhHHH
Q 002638 178 ---------NKGVQSGAAMCMAKMVECAS------------------------------------------DPPVVAFQK 206 (898)
Q Consensus 178 ---------nk~VQegAasALAkiIE~a~------------------------------------------d~~~~yL~~ 206 (898)
-..+|.--|.-|+++|..-+ +....|+.+
T Consensus 560 ~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~ 639 (858)
T COG5215 560 ILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASK 639 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12233344444444443221 111234667
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHHHh
Q 002638 207 LCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLVID 283 (898)
Q Consensus 207 LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e~Lsdd--DW~vRKaA~EaL~sLA~avge~L~P 283 (898)
.+|.|.+.|+...+.+-..++..||-++. .|..|.+|.+.+|..|.++|+++ +..++-+.+-+++-||.++|-.|.+
T Consensus 640 fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~ 719 (858)
T COG5215 640 FIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFES 719 (858)
T ss_pred hhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHH
Confidence 88888888887788887888888888885 56789999999999999999985 5678888999999999999999999
Q ss_pred hHHHHHHHHH
Q 002638 284 GATSTLTVLE 293 (898)
Q Consensus 284 y~~~~I~~LE 293 (898)
|++.+|-.++
T Consensus 720 YL~~im~L~q 729 (858)
T COG5215 720 YLDMIMMLFQ 729 (858)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 9
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.14 E-value=1.8e-09 Score=111.85 Aligned_cols=197 Identities=16% Similarity=0.198 Sum_probs=143.5
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh--c---hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH--S---ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~--g---d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
+..++..|.....+.+|..|.+++.-|..++.++ . +.+.++|..++..|...+.|..+.|-..+|.+++.|+..+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455556645556789999999999999999999 2 3345566677799999999999999999999999999999
Q ss_pred hcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHHhcCCchhhHHHHHHHH
Q 002638 152 LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKL-CARICKLLSNQNFMAKASLLPVV 230 (898)
Q Consensus 152 ik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~L-lPRLlkLLks~~~kaK~alL~aI 230 (898)
-.. + ..+...++++|++.+++.++.+...|..||..+++.+. |...+ .+.+...+++.+.++|..++.++
T Consensus 85 ~~~-~---~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l 155 (228)
T PF12348_consen 85 GSH-F---EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWL 155 (228)
T ss_dssp GGG-G---HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred hHh-H---HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 433 2 36688899999999999999999999999999999764 33455 77888889999999999999999
Q ss_pred HHHHh-cc---ccC--cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHH
Q 002638 231 GSLSQ-VG---AIA--PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVI 282 (898)
Q Consensus 231 gSLA~-vG---a~~--~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~ 282 (898)
..++. .+ ..+ ...++.+++.|..++.|.+..+|.+|-++|..+....|+...
T Consensus 156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 98864 33 223 224688999999999999999999999999999999986433
No 10
>PRK09687 putative lyase; Provisional
Probab=99.10 E-value=5.3e-09 Score=113.67 Aligned_cols=184 Identities=11% Similarity=0.087 Sum_probs=129.9
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh-hcC
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKD 131 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr-LkD 131 (898)
.|...+..|+..|..+- +++.++.+...+ .+.++.+|..++.+||.+.. .+.. .+..++.+... ++|
T Consensus 35 ~d~~vR~~A~~aL~~~~---~~~~~~~l~~ll----~~~d~~vR~~A~~aLg~lg~--~~~~---~~~a~~~L~~l~~~D 102 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG---GQDVFRLAIELC----SSKNPIERDIGADILSQLGM--AKRC---QDNVFNILNNLALED 102 (280)
T ss_pred CCHHHHHHHHHHHHhcC---cchHHHHHHHHH----hCCCHHHHHHHHHHHHhcCC--Cccc---hHHHHHHHHHHHhcC
Confidence 45557778887776543 233344444432 36678999999999998643 1111 45667777766 799
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002638 132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211 (898)
Q Consensus 132 pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRL 211 (898)
+++.||..++.+||.+..... ...+.++..|..++.+.++.|+.+|+.||..+- + +..++-|
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~--------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----~------~~ai~~L 164 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNP--------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----D------EAAIPLL 164 (280)
T ss_pred CCHHHHHHHHHHHhccccccc--------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC----C------HHHHHHH
Confidence 999999999999998753321 113456777777888889999999999996442 1 2367888
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002638 212 CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL 273 (898)
Q Consensus 212 lkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sL 273 (898)
+.+|+++++.+|..++.++|.+ . ..-+.+++.|...|.|.++.+|+.|+.+|+.+
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~-~------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN-K------YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC-C------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 8888998888888888777775 1 11236777788888888889999888888853
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=5.5e-09 Score=121.39 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhh
Q 002638 40 EMKQKILTSLSKLAD--RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH 117 (898)
Q Consensus 40 eLK~rll~~L~KLsD--rDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~Ph 117 (898)
.+..-+..+|.+.+| ...++.|....+.+...+++..+..+|+.++..+...+|+.+.+++.+||.++...++.+.-.
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 345555666666654 448888888999999999887788888888777766699999999999999999888999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh--
Q 002638 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC-- 195 (898)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~-- 195 (898)
+|.|+|.+...|-|..+.||.|+-.++-.+.+.+ +. ..+..+++-|+++|.+++..+.+ |+..+...
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN------~dI~~~ip~Lld~l~dp~~~~~e----~~~~L~~ttF 361 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DN------PDIQKIIPTLLDALADPSCYTPE----CLDSLGATTF 361 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHhcCcccchHH----HHHhhcceee
Confidence 9999999999999999999999999999999998 21 23788999999999998876664 33333322
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002638 196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272 (898)
Q Consensus 196 a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~s 272 (898)
......+-|..|+|-|..-|...+.-.|-.+...++=++ -+. ....+|+..++|.|...+.+.+..+|--|..+|+.
T Consensus 362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence 133344678889999999998776665554444554443 243 45789999999999999999999999999999999
Q ss_pred HHHhcc-hHHHhhHHHHHHHHHhhhcCCCh
Q 002638 273 LALHSS-NLVIDGATSTLTVLEACRFDKIK 301 (898)
Q Consensus 273 LA~avg-e~L~Py~~~~I~~LE~~RfDKvK 301 (898)
+...+| ..|..-.+.+.+.+-.+..++.+
T Consensus 442 l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~ 471 (569)
T KOG1242|consen 442 LLERLGEVSFDDLIPELSETLTSEKSLVDR 471 (569)
T ss_pred HHHHHHhhcccccccHHHHhhccchhhhhh
Confidence 999999 55532234444444444444333
No 12
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=8.3e-09 Score=121.56 Aligned_cols=264 Identities=14% Similarity=0.139 Sum_probs=194.2
Q ss_pred HHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhchh------
Q 002638 44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSEL------ 113 (898)
Q Consensus 44 rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~--~s~k~~vRKeAIlLLG~IAEg~gd~------ 113 (898)
++++.|.+. .|+..++.|-+.|+++.. ..|+.|+.+|.+-+ ...+...|..|++.|++....--..
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~----~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQS----QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHh----ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 345666555 799999999999999886 25888888886654 3345779999999999875432211
Q ss_pred ------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC-HhHHHHHH
Q 002638 114 ------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN-KGVQSGAA 186 (898)
Q Consensus 114 ------I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn-k~VQegAa 186 (898)
-..--.+|...|++.|+-|.|.++++|.-+++.+|..=+- ...||.++..|.....+.. -.+.++++
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP------~n~wp~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP------QNQWPELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence 1234678999999999999999999999999999977632 2569999999999996544 45999999
Q ss_pred HHHHHHHHhcC-CCCchhHHHHHHHHHHHhcC--CchhhHHHHHHH-HHHHHhccccC--cccHHHHHHHHHHhhCCCCH
Q 002638 187 MCMAKMVECAS-DPPVVAFQKLCARICKLLSN--QNFMAKASLLPV-VGSLSQVGAIA--PQSLEPLLQSIHECLGSTDW 260 (898)
Q Consensus 187 sALAkiIE~a~-d~~~~yL~~LlPRLlkLLks--~~~kaK~alL~a-IgSLA~vGa~~--~pyld~lLp~L~e~LsddDW 260 (898)
.||.=+||+.. +......+.++--++.-... ++-.+|-+++.| ..++--.++.| ..-.+-||+...+.-..+|-
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE 231 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH
Confidence 99999999863 33334455555555544432 355667666655 34442222333 22334578888888899999
Q ss_pred HHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH--HhhhcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638 261 ATRKAAADALSALALHSSNLVIDGATSTLTVL--EACRFDKIKPVRDSMNEALQLWKKIAGKV 321 (898)
Q Consensus 261 ~vRKaA~EaL~sLA~avge~L~Py~~~~I~~L--E~~RfDKvKpVRD~A~eALelWK~La~~~ 321 (898)
.+|-+|.+||..|+...-+++.||+.+.+=.+ ...+- .++ ++|++++|||..|+...
T Consensus 232 ~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~~d---eValQaiEFWsticeEE 290 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-DND---EVALQAIEFWSTICEEE 290 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcH---HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998854433 34443 344 59999999999999653
No 13
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.92 E-value=1.9e-08 Score=116.15 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=162.9
Q ss_pred HHHcCCChh--HHHHHHHHHHHHHhcCCC----CC-----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh
Q 002638 48 SLSKLADRD--THQIAIEDLEKTIQTLSQ----ES-----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST 116 (898)
Q Consensus 48 ~L~KLsDrD--T~k~Aa~eLD~Ia~~L~p----e~-----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P 116 (898)
+|+-+.|.- -+++++...++++..|+- +. +..+|.+++++..+. .-.+-+|+++.-...-...|
T Consensus 526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-----~~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-----GLILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-----cEEEecccceeeehhhccCc
Confidence 344444332 567888888888877641 11 455555555444321 22344566665555556789
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
||+.|+++|+++|+.+.|.||..+++.+|.|+..+..++. ...+..+=..|++.|++..+.|-.....|+..|.-..
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e---~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE---TKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch---HHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999955532 2446666678999999999998866555555555443
Q ss_pred C-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHH
Q 002638 197 S-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS--IHECLGSTDWATRKAAADALSAL 273 (898)
Q Consensus 197 ~-d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~--L~e~LsddDW~vRKaA~EaL~sL 273 (898)
+ .-..|-+..|+|+|.++|++.+-|+.+..+..+|.|...+....+.-+|.--| |.+.|.+-+..+|++|.+++|.|
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 2 22335578899999999999999999999999999875443333333444333 67788998899999999999999
Q ss_pred HHhcch
Q 002638 274 ALHSSN 279 (898)
Q Consensus 274 A~avge 279 (898)
+.++|+
T Consensus 758 s~aiGP 763 (975)
T COG5181 758 SRAIGP 763 (975)
T ss_pred HhhcCH
Confidence 999994
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.92 E-value=9.1e-08 Score=118.76 Aligned_cols=241 Identities=19% Similarity=0.215 Sum_probs=137.3
Q ss_pred chhhhHhHHHHHHHHHHHHHcC---CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002638 31 SLSSHLAMVEMKQKILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVC 107 (898)
Q Consensus 31 ~~s~~~~~~eLK~rll~~L~KL---sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA 107 (898)
+.+-..+++.|..-.+..|... .|.++|+.|++.|-.+- +++.++.+. ..+.+.++.+|..|+.+|+.+.
T Consensus 608 ~~~~~~~~~~l~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---~~~~~~~L~----~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 608 PSPRILAVLALDAPSVAELAPYLADPDPGVRRTAVAVLTETT---PPGFGPALV----AALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred chHHHHHHHhccchhHHHHHHHhcCCCHHHHHHHHHHHhhhc---chhHHHHHH----HHHcCCCHHHHHHHHHHHHHHH
Confidence 3344466777766666555444 56779999998887664 343344444 3335678889999999888775
Q ss_pred HHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH--------HHHhcccccCCc-hhHH-----hhHHHHHHH
Q 002638 108 ELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS--------KLYLNGKEENNG-TVVG-----LFVKPLFEA 173 (898)
Q Consensus 108 Eg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA--------~~lik~~~e~~~-~~~~-----~lL~pL~ea 173 (898)
+.... .+.+...|.|+++.||.+++.+|+.+. ..+-++.. ... .... .-.+.|..+
T Consensus 681 ~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~-~VR~~Av~aL~~~~~~~~l~~~ 750 (897)
T PRK13800 681 EVLPP---------APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDH-RVRIEAVRALVSVDDVESVAGA 750 (897)
T ss_pred hccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCH-HHHHHHHHHHhcccCcHHHHHH
Confidence 43221 123334445555555555555554431 00000000 000 0000 001234455
Q ss_pred HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Q 002638 174 MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE 253 (898)
Q Consensus 174 L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e 253 (898)
+.+.++.|+.+|+.+|..+-.... .-++.|..++++++..+|.+++.+++.+-. . ..+.+.|..
T Consensus 751 l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~------~~~~~~l~~ 814 (897)
T PRK13800 751 ATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGC--P------PDDVAAATA 814 (897)
T ss_pred hcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--c------chhHHHHHH
Confidence 566666666666666666543211 125667788888888888887777766411 1 123355777
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638 254 CLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW 314 (898)
Q Consensus 254 ~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelW 314 (898)
.|.|+||.+|.+|+++|+.+.. ...+..|..+..|++..||..|..||.-|
T Consensus 815 aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 815 ALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 8888888888888888876531 22334444444588888888887777765
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.92 E-value=6.6e-08 Score=119.95 Aligned_cols=217 Identities=16% Similarity=0.154 Sum_probs=145.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp 132 (898)
.|.+.+..|+..|..+...+++ .+.++.+| .++++.+|..++.+|+.+..+ + ...+++.|+|+
T Consensus 664 ~d~~VR~~Aa~aL~~l~~~~~~--~~~L~~~L----~~~d~~VR~~A~~aL~~~~~~--~---------~~~l~~~L~D~ 726 (897)
T PRK13800 664 GAAAVRRAAAEGLRELVEVLPP--APALRDHL----GSPDPVVRAAALDVLRALRAG--D---------AALFAAALGDP 726 (897)
T ss_pred CCHHHHHHHHHHHHHHHhccCc--hHHHHHHh----cCCCHHHHHHHHHHHHhhccC--C---------HHHHHHHhcCC
Confidence 3455788888888887664433 23333333 346789999999988876411 1 11345567777
Q ss_pred ChHHHHHHHHHHHHHH------HHHhccc----------ccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 133 DSGMKEACRDSIGSLS------KLYLNGK----------EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 133 Ds~VR~Ac~~tLG~LA------~~lik~~----------~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
|+.||.+++.+|+.+- ..+.++. ...........++.|..++.+.++.|+..|+.+|..+-..
T Consensus 727 d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~- 805 (897)
T PRK13800 727 DHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP- 805 (897)
T ss_pred CHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-
Confidence 7777777777776531 1110000 0000000122356788888889999999999999888431
Q ss_pred CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 197 ~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
+.+.+.++..|++++..+|..++.+++.+.. +..++.|..+|.|++|.+|+.|+.+|+.+
T Consensus 806 --------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~--- 865 (897)
T PRK13800 806 --------PDDVAAATAALRASAWQVRQGAARALAGAAA---------DVAVPALVEALTDPHLDVRKAAVLALTRW--- 865 (897)
T ss_pred --------chhHHHHHHHhcCCChHHHHHHHHHHHhccc---------cchHHHHHHHhcCCCHHHHHHHHHHHhcc---
Confidence 1244668889999999999988888876421 24558888999999999999999999986
Q ss_pred cchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638 277 SSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 277 vge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel 313 (898)
-+ -...+..|.....|.+..||..|.+||+.
T Consensus 866 ~~------~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 866 PG------DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CC------CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 11 12345556666669999999999998863
No 16
>PRK09687 putative lyase; Provisional
Probab=98.92 E-value=3e-08 Score=107.91 Aligned_cols=194 Identities=13% Similarity=0.065 Sum_probs=144.6
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~ 155 (898)
.+..++.+|. +.+..+|..++.+|+.+-. +.+++.+.+.++|+++.||.+++++||+|...-
T Consensus 24 ~~~~L~~~L~----d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~---- 85 (280)
T PRK09687 24 NDDELFRLLD----DHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK---- 85 (280)
T ss_pred cHHHHHHHHh----CCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----
Confidence 3556666664 6778999999999986643 566777888899999999999999999864311
Q ss_pred ccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638 156 EENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (898)
Q Consensus 156 ~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA 234 (898)
......++.|... +.++++.|+..|+.+|..++.... .+...++..+..++.+++..+|..++.++|.+
T Consensus 86 -----~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~- 155 (280)
T PRK09687 86 -----RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI- 155 (280)
T ss_pred -----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-
Confidence 0023466667666 478899999999999999875332 12456777788888888888887766666543
Q ss_pred hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638 235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 235 ~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel 313 (898)
+ -+..++.|..+|.+++|.+|..|+.+|+.+... -+.++..|.....|.+..||..|..+|..
T Consensus 156 --~------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 156 --N------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred --C------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 1 135788999999999999999999999988221 12444555555579999999998888854
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.88 E-value=4.1e-08 Score=112.94 Aligned_cols=243 Identities=21% Similarity=0.303 Sum_probs=155.9
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp 132 (898)
.|-...+++.-.|..+... +++.+....+.|.....++++.+|-.|++.|+.++ ....++.+++.|.+.|.|+
T Consensus 54 ~~~~~Krl~yl~l~~~~~~-~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~~~ 126 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYLHE-DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR------TPEMAEPLIPDVIKLLSDP 126 (526)
T ss_dssp SSHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc------ccchhhHHHHHHHHHhcCC
Confidence 5666888888888877763 34346667788877788999999999999998877 4445677899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCchhHHh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 002638 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARI 211 (898)
Q Consensus 133 Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~-lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRL 211 (898)
++.||..|+-++..+..... +..+. +++.|...|.++++.|+.+|+.+|..+ ...++.....++.++.+|
T Consensus 127 ~~~VRk~A~~~l~~i~~~~p--------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L 197 (526)
T PF01602_consen 127 SPYVRKKAALALLKIYRKDP--------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRIL 197 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHCH--------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccCH--------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHh
Confidence 99999999999999998862 22444 789999999999999999999999998 222211115667777777
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhcc-----------------------------------ccCcccHHHHHHHHHHhhC
Q 002638 212 CKLLSNQNFMAKASLLPVVGSLSQVG-----------------------------------AIAPQSLEPLLQSIHECLG 256 (898)
Q Consensus 212 lkLLks~~~kaK~alL~aIgSLA~vG-----------------------------------a~~~pyld~lLp~L~e~Ls 256 (898)
..++..++.-.+..++.++..++... ....+.+..+++.|..+|.
T Consensus 198 ~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 198 CQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS 277 (526)
T ss_dssp HHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT
T ss_pred hhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh
Confidence 77766665544444444333322110 0011234455555556666
Q ss_pred CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638 257 STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 257 ddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La 318 (898)
+.+..+|-.++++|..|+...++.+. +..- .+..+++|.+..||.. +|++...++
T Consensus 278 s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~---~~~~l~~~~d~~Ir~~---~l~lL~~l~ 332 (526)
T PF01602_consen 278 SSDPNVRYIALDSLSQLAQSNPPAVF-NQSL---ILFFLLYDDDPSIRKK---ALDLLYKLA 332 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCCHCHHHHG-THHH---HHHHHHCSSSHHHHHH---HHHHHHHH-
T ss_pred cccchhehhHHHHHHHhhcccchhhh-hhhh---hhheecCCCChhHHHH---HHHHHhhcc
Confidence 66666666666666555555432222 2111 2234444555544443 444444444
No 18
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.9e-07 Score=108.39 Aligned_cols=229 Identities=19% Similarity=0.219 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHH
Q 002638 60 IAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEA 139 (898)
Q Consensus 60 ~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~A 139 (898)
+|+..|-.|+. |+.-.-+-.-+..-+++.+|++||-||++|=-+..-|++.+.|-+|++ ...|.||||.|.+|
T Consensus 128 iAL~GLS~fvT---pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 128 LALSGLSCIVT---PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSA 200 (877)
T ss_pred heecccccccC---chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHH
Confidence 44444444443 433223333344445688999999999999999999999999988765 56899999999999
Q ss_pred HHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh--cCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhc
Q 002638 140 CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM--EQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLS 216 (898)
Q Consensus 140 c~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~--eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLk 216 (898)
|+.+|-.||+.-.+. +-.+-|-+|..|. .+|+..-- |-++.-. =.+..|-|. +|+|.|+.+++
T Consensus 201 AV~VICELArKnPkn--------yL~LAP~ffkllttSsNNWmLIK-----iiKLF~a-LtplEPRLgKKLieplt~li~ 266 (877)
T KOG1059|consen 201 AVSVICELARKNPQN--------YLQLAPLFYKLLVTSSNNWVLIK-----LLKLFAA-LTPLEPRLGKKLIEPITELME 266 (877)
T ss_pred HHHHHHHHHhhCCcc--------cccccHHHHHHHhccCCCeehHH-----HHHHHhh-ccccCchhhhhhhhHHHHHHH
Confidence 999999999887433 3346667777773 45654321 1111111 123345444 69999999998
Q ss_pred CCchhhHHHHHHHHHHHHhcc--ccC---cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHH
Q 002638 217 NQNFMAKASLLPVVGSLSQVG--AIA---PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTV 291 (898)
Q Consensus 217 s~~~kaK~alL~aIgSLA~vG--a~~---~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~ 291 (898)
+. -+...+|+||++++.+. ... ...+..+++.|..++.++|..+|=-.|-||+.|+...+..+..|.+=+++.
T Consensus 267 sT--~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrc 344 (877)
T KOG1059|consen 267 ST--VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRC 344 (877)
T ss_pred hh--HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHH
Confidence 54 45678999999997653 222 334556677788889999999999999999999999999888888777766
Q ss_pred HHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638 292 LEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 292 LE~~RfDKvKpVRD~A~eALelWK~La 318 (898)
|. |++..+|- +||++.-++.
T Consensus 345 L~----DkD~SIRl---rALdLl~gmV 364 (877)
T KOG1059|consen 345 LD----DKDESIRL---RALDLLYGMV 364 (877)
T ss_pred hc----cCCchhHH---HHHHHHHHHh
Confidence 55 99998774 6888876665
No 19
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.4e-07 Score=109.19 Aligned_cols=253 Identities=14% Similarity=0.188 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc
Q 002638 40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS 111 (898)
Q Consensus 40 eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L--------~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g 111 (898)
....+++.+|..-.+...+--|+=.|-.|+..- +...+|.|+.+|. ++...+|+.|+-+||++|--..
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSP 184 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCCh
Confidence 456677777776666667777777888888621 2333777676666 6778999999999999986543
Q ss_pred ---hhchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH
Q 002638 112 ---ELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM 187 (898)
Q Consensus 112 ---d~I~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas 187 (898)
+.+.. ..++..++..|..+++ .....+.|+|..|++.- .|. ..-+.+..+|+.|+..|...++.|..=||.
T Consensus 185 ~~Rd~vl~--~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk-~P~--P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~W 259 (514)
T KOG0166|consen 185 DCRDYVLS--CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK-NPS--PPFDVVAPILPALLRLLHSTDEEVLTDACW 259 (514)
T ss_pred HHHHHHHh--hcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-CCC--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33332 3456677777777775 44455679999999887 332 223668889999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cCccc-HHHHHHHHHHhhC-CCCHHHH
Q 002638 188 CMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IAPQS-LEPLLQSIHECLG-STDWATR 263 (898)
Q Consensus 188 ALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa-~~~py-ld~lLp~L~e~Ls-ddDW~vR 263 (898)
||.-+.+...+.+...++ .+||+|+++|.++..+++..+|-+||-++...+ ..... -...+|+|..+|+ +..-.+|
T Consensus 260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik 339 (514)
T KOG0166|consen 260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIK 339 (514)
T ss_pred HHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence 999999887665554555 599999999999999999889999999653222 11111 2257888889988 4556699
Q ss_pred HHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCCh
Q 002638 264 KAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIK 301 (898)
Q Consensus 264 KaA~EaL~sLA~avge~L~Py-----~~~~I~~LE~~RfDKvK 301 (898)
|.||=+|+.|+..-.+.+.-. ++.+|+.|+..-||--|
T Consensus 340 kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rK 382 (514)
T KOG0166|consen 340 KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRK 382 (514)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHH
Confidence 999999999999666555533 47778888877777555
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.76 E-value=1.7e-07 Score=107.78 Aligned_cols=225 Identities=20% Similarity=0.199 Sum_probs=147.8
Q ss_pred HHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHH
Q 002638 47 TSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISH 124 (898)
Q Consensus 47 ~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~ 124 (898)
.....+ .+.-.+..|+..|-.+. .++.++.+++.|.....+++|.+||.|++++..+.+.+++.+.+. +++.
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~ 156 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPK 156 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHH
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHH
Confidence 333445 34447778888887777 466788888888888889999999999999999999988876654 5788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH---------------------------------------h
Q 002638 125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG---------------------------------------L 165 (898)
Q Consensus 125 IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~---------------------------------------~ 165 (898)
+.+.|.|+++.|+.+|+.++..+ ....... ...++ .
T Consensus 157 l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~---~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~ 231 (526)
T PF01602_consen 157 LKQLLSDKDPSVVSAALSLLSEI--KCNDDSY---KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNR 231 (526)
T ss_dssp HHHHTTHSSHHHHHHHHHHHHHH--HCTHHHH---TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHH--ccCcchh---hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHH
Confidence 88889999999999999988887 1100000 01122 2
Q ss_pred hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH
Q 002638 166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE 245 (898)
Q Consensus 166 lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld 245 (898)
++..+...|...++.|...++.++..+.. ..+++..+++.|.++|.+++.-+|-.+|.+|..++. ..++.+.
T Consensus 232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~-----~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~---~~~~~v~ 303 (526)
T PF01602_consen 232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSP-----SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ---SNPPAVF 303 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC---HCHHHHG
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhc-----chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhc---ccchhhh
Confidence 33333333333333444333333332222 112677889999999998888888888888888754 2244554
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH
Q 002638 246 PLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVL 292 (898)
Q Consensus 246 ~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~L 292 (898)
..-..++-+..++|..+|+.++++|..++.. ..+...+..+++++
T Consensus 304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n~~~Il~eL~~~l 348 (526)
T PF01602_consen 304 NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SNVKEILDELLKYL 348 (526)
T ss_dssp THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHH
T ss_pred hhhhhhheecCCCChhHHHHHHHHHhhcccc--cchhhHHHHHHHHH
Confidence 3333344444589999999999999998863 44455555555555
No 21
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=8.5e-07 Score=102.43 Aligned_cols=256 Identities=15% Similarity=0.155 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHHHhcCCC----CCHHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhc
Q 002638 56 DTHQIAIEDLEKTIQTLSQ----ESLPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK 130 (898)
Q Consensus 56 DT~k~Aa~eLD~Ia~~L~p----e~Lp~fLs~L-~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLk 130 (898)
+-|+.|+.+|++++.++.. +.+.-++..| -+...+.....||.++..+.+++-+.+....+|+.+|++-|+.++.
T Consensus 15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence 4689999999999998732 2377777744 4666778888899888888888888887777799999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-h-hHHHHH
Q 002638 131 DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-V-AFQKLC 208 (898)
Q Consensus 131 DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~-yL~~Ll 208 (898)
|+|..||--+|+++-.++..+-... -.+++.+...|.....+.+..|+.| +.-|.+++.++..... . -|+.++
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~v----~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~i 169 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGEV----LVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEFI 169 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccCc----ccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHHH
Confidence 9999999999999999998883221 1345556666666667888888864 5568999887633222 2 377777
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h-HHHhhH
Q 002638 209 ARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N-LVIDGA 285 (898)
Q Consensus 209 PRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e-~L~Py~ 285 (898)
|-|-.-+...+..+|..+++-|..+-.+- -.+..|++.+++.|+.+|+|+...+|..+=-+|+.....+. + ... -.
T Consensus 170 pLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~ 248 (675)
T KOG0212|consen 170 PLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DY 248 (675)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-Cc
Confidence 77777777777788889999888874433 34678999999999999999999999888777887766665 1 111 23
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 286 TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 286 ~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
.+.++++-.-..-..+..+.. ||.-..+|..-
T Consensus 249 ~~~i~vlv~~l~ss~~~iq~~---al~Wi~efV~i 280 (675)
T KOG0212|consen 249 DDMINVLVPHLQSSEPEIQLK---ALTWIQEFVKI 280 (675)
T ss_pred ccchhhccccccCCcHHHHHH---HHHHHHHHhcC
Confidence 566666665555566645544 44444444433
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=2.3e-06 Score=98.97 Aligned_cols=277 Identities=16% Similarity=0.136 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHcC-CChh-HHHHHHHHHHHHHhcCCC-CC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh
Q 002638 38 MVEMKQKILTSLSKL-ADRD-THQIAIEDLEKTIQTLSQ-ES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH 110 (898)
Q Consensus 38 ~~eLK~rll~~L~KL-sDrD-T~k~Aa~eLD~Ia~~L~p-e~----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~ 110 (898)
.+-....+..+|-|+ +|.| .-+-|++-||++++.+.. +. ++.|++.|-+.+...++..|..-+.-|..+=..-
T Consensus 119 v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P 198 (675)
T KOG0212|consen 119 VLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP 198 (675)
T ss_pred cccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC
Confidence 344455666677777 4444 677899999999988632 22 8999999999988889999999988886665544
Q ss_pred chhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHH
Q 002638 111 SELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMA 190 (898)
Q Consensus 111 gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALA 190 (898)
.-.+..|+|.+++-+...|.|+...||..|-.+++.+-..+-..+ . .-.......-|..-++++++..|..|..=+.
T Consensus 199 ~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P-~--s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~ 275 (675)
T KOG0212|consen 199 DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP-S--SMDYDDMINVLVPHLQSSEPEIQLKALTWIQ 275 (675)
T ss_pred cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc-c--ccCcccchhhccccccCCcHHHHHHHHHHHH
Confidence 445888999999999999999999999999999999999884321 1 1135566777777888899999999988888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHH---HHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHH
Q 002638 191 KMVECASDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVV---GSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKA 265 (898)
Q Consensus 191 kiIE~a~d~~~~yL~~LlPRLlkLLks~~~k-aK~alL~aI---gSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKa 265 (898)
.|+.-.+.....|+..++-.+++++.+...+ +|..+-..- .++.... ..-.--+..+|..|...++++.-.+|.+
T Consensus 276 efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~ 355 (675)
T KOG0212|consen 276 EFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIA 355 (675)
T ss_pred HHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHH
Confidence 8887777878889999999999999886554 554333333 2332111 0111234589999999999999999999
Q ss_pred HHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 266 AADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 266 A~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
|.+=+..|-...|..+--|..++-..|....-|... +++..+|++...|+..
T Consensus 356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence 999999999999966666999998888888889888 8899999999999944
No 23
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=7.6e-07 Score=111.19 Aligned_cols=226 Identities=12% Similarity=0.127 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHH
Q 002638 60 IAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE 138 (898)
Q Consensus 60 ~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~ 138 (898)
...+||=.+|..|+..+ +--||.. ...+.-|..|+-|-.-||+|++-.++.+.||+++++|-+.|-==||+..|++
T Consensus 940 sTYKELc~LASdl~qPdLVYKFM~L---Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~ 1016 (1702)
T KOG0915|consen 940 STYKELCNLASDLGQPDLVYKFMQL---ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD 1016 (1702)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHH---hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH
Confidence 45789999999886434 4344432 2345679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcC
Q 002638 139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSN 217 (898)
Q Consensus 139 Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d-~~~~yL~~LlPRLlkLLks 217 (898)
+-...=++|...- +.. .+.++.++++-|+..|.+...+|.+++|.||.-+++.-+. .+.+.+++|-..++...++
T Consensus 1017 aM~sIW~~Li~D~-k~~---vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD 1092 (1702)
T KOG0915|consen 1017 AMTSIWNALITDS-KKV---VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD 1092 (1702)
T ss_pred HHHHHHHHhccCh-HHH---HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9887777766543 111 2467888999999999999999999999999999997432 3335677777777777776
Q ss_pred CchhhHHH---HHHHHHHHH-hcc-----ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHH
Q 002638 218 QNFMAKAS---LLPVVGSLS-QVG-----AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDGATS 287 (898)
Q Consensus 218 ~~~kaK~a---lL~aIgSLA-~vG-----a~~~pyld~lLp~L~e~-LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~ 287 (898)
=+.-+|.+ +..+|+.+. .++ +.....++.++|+|.+- ..++-..+|+.++-++..|+...|..+.||++.
T Consensus 1093 IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~ 1172 (1702)
T KOG0915|consen 1093 IKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPK 1172 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhH
Confidence 55566665 444555552 222 34567889999998863 447889999999999999999999999999888
Q ss_pred HHHHH
Q 002638 288 TLTVL 292 (898)
Q Consensus 288 ~I~~L 292 (898)
+|..|
T Consensus 1173 LIp~l 1177 (1702)
T KOG0915|consen 1173 LIPLL 1177 (1702)
T ss_pred HHHHH
Confidence 77654
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.60 E-value=1.3e-06 Score=90.70 Aligned_cols=174 Identities=16% Similarity=0.204 Sum_probs=127.5
Q ss_pred CChhHHHHHHHHHHHHHhcC-CCCCHHHHHH-------HHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQTL-SQESLPMLLN-------CLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISH 124 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L-~pe~Lp~fLs-------~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~ 124 (898)
.|=+.+.-|+..|..++..- +.+..+.|+. .|.....+..+.+-+.|+.+++.++...+..+.||++.++|.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 45568889999999998754 2233444444 444556777888999999999999999999999999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh-HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC---CCC
Q 002638 125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-VKPLFEAMMEQNKGVQSGAAMCMAKMVECAS---DPP 200 (898)
Q Consensus 125 IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l-L~pL~eaL~eqnk~VQegAasALAkiIE~a~---d~~ 200 (898)
|++++.|+...||.+|..+|..|+.++. ..+.+ +..+...+.+.|+.+...++.+|..+++..+ ...
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCS---------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCC---------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 9999999999999999999999999881 12334 6666667788999999999999999999876 111
Q ss_pred c--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638 201 V--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 201 ~--~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~ 235 (898)
. ..++.+++-+.+++.+++..+|.++-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 2468899999999999999999998888888753
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.57 E-value=4.8e-06 Score=108.91 Aligned_cols=254 Identities=17% Similarity=0.128 Sum_probs=173.4
Q ss_pred CCChhHHHHHHHHHHHHHhc-------C-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh---chhhHHH
Q 002638 52 LADRDTHQIAIEDLEKTIQT-------L-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---TSTHVTK 120 (898)
Q Consensus 52 LsDrDT~k~Aa~eLD~Ia~~-------L-~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~---I~PhLpk 120 (898)
..+.|.+..++..|..+... + ....++.++.+|. +.+..+++.++.+|++++.+..+. +.. .-
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~----s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--aG 488 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG----LSSEQQQEYAVALLAILTDEVDESKWAITA--AG 488 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CC
Confidence 35678999988888777642 1 1223555555554 566889999999999999866543 222 35
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhH--HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC
Q 002638 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD 198 (898)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~--~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d 198 (898)
.+|.+++.|..+++.++..|+|+|+.|+.+--+ ....+ ...++||++.|...++.+|.-|+.+|..++.....
T Consensus 489 aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q-----ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 489 GIPPLVQLLETGSQKAKEDSATVLWNLCCHSED-----IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH-----HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 678888899999999999999999999863200 11112 24788999999888999999999999999754311
Q ss_pred CCc-hh------------------H-------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-cc
Q 002638 199 PPV-VA------------------F-------------------QKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AI 239 (898)
Q Consensus 199 ~~~-~y------------------L-------------------~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~ 239 (898)
... ++ | +.-+|.|..+|++++...|..+..+|..++... ..
T Consensus 564 ~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 564 ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence 100 00 0 124678888888888777877777777776422 11
Q ss_pred -CcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch-HHHhh-HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002638 240 -APQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN-LVIDG-ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK 316 (898)
Q Consensus 240 -~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge-~L~Py-~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~ 316 (898)
-.-.....+|+|...|.+.+..+|+.|+.+|+.++....+ ...-+ ...+|+.|-....+....+++.+.+||...-.
T Consensus 644 ~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 1223446788899999999999999999999999974442 22222 23466666666667777677776666655443
No 26
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.55 E-value=4.6e-07 Score=84.38 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638 95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 95 vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL 174 (898)
.|+.++..|..++.+.+..+.+|+++|++.|+..+.|+|+.||-.+|+++..++...-.. .-.++.+++..|+..+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999888322 1245677777777777
Q ss_pred hcCCHhHHHHHHHHHHHH
Q 002638 175 MEQNKGVQSGAAMCMAKM 192 (898)
Q Consensus 175 ~eqnk~VQegAasALAki 192 (898)
.|.++.||.||.. |.++
T Consensus 78 ~D~d~~Vr~~a~~-Ld~l 94 (97)
T PF12755_consen 78 ADPDENVRSAAEL-LDRL 94 (97)
T ss_pred cCCchhHHHHHHH-HHHH
Confidence 8999999998754 4443
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.49 E-value=2.6e-05 Score=94.46 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=183.4
Q ss_pred HHHHHHHHhhhc--CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 77 LPMLLNCLYESS--NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 77 Lp~fLs~L~es~--~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
++.|++.+.+.+ +.+...+|=+++-.++.+...+|+.+.++=..|+-+++..|.-+...||.-++.+||.|+..+-
T Consensus 129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-- 206 (1233)
T KOG1824|consen 129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-- 206 (1233)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC--
Confidence 555666665554 3455668889999999999999999999999999999999999999999999999999999982
Q ss_pred cccCCchhHHhhHHHHHHHHhcCCHh-HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh---cCCchhhHHHHHHHH
Q 002638 155 KEENNGTVVGLFVKPLFEAMMEQNKG-VQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL---SNQNFMAKASLLPVV 230 (898)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL~eqnk~-VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLL---ks~~~kaK~alL~aI 230 (898)
...+..+..-|+..|...... .--.-..||+.+|..++...-.++++++|-+.... +..+-..|+.+|.++
T Consensus 207 -----~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQal 281 (1233)
T KOG1824|consen 207 -----RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQAL 281 (1233)
T ss_pred -----HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHH
Confidence 245667777777777554333 33568899999999998888888999999999888 666788899999999
Q ss_pred HHHHhcc-ccCcccHHHHHHHHHHhhC-------------------C-------------C--CHHHHHHHHHHHHHHHH
Q 002638 231 GSLSQVG-AIAPQSLEPLLQSIHECLG-------------------S-------------T--DWATRKAAADALSALAL 275 (898)
Q Consensus 231 gSLA~vG-a~~~pyld~lLp~L~e~Ls-------------------d-------------d--DW~vRKaA~EaL~sLA~ 275 (898)
+++..-. ....||.+.++.-++++++ + + .|.+|++|+.||.++-.
T Consensus 282 e~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 282 ESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred HHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence 9997544 4567788888887766541 0 1 29999999999999999
Q ss_pred hcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH-HHHHHhhcC
Q 002638 276 HSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL-QLWKKIAGK 320 (898)
Q Consensus 276 avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL-elWK~La~~ 320 (898)
...+.+..+...+=.++-..-.++-+.|+--+.+++ .++++.+.+
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~ 407 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPV 407 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Confidence 988888777766666666555566666775555554 455565554
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=3.6e-06 Score=97.78 Aligned_cols=261 Identities=16% Similarity=0.120 Sum_probs=181.8
Q ss_pred CChhHHHHHHHHHHHHHhcC--------CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQTL--------SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIIS 123 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L--------~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~ 123 (898)
.+.+.+.+|+-.|-.|+..- ....+.++|..|.... +-...+.+.-+|.++|++.. -.....+..++|
T Consensus 164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~---~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD---KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc---chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 45668888888888777531 2334666666666333 23567788889999999874 334567999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc-hhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG-TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV 202 (898)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~-~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~ 202 (898)
.|.+.|.+.|+.|..=+||+|.-|+..--+ ..+ -.-..+++.|.+.|......++..|..++-.|+-+.+.+...
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne----~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNE----KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChH----HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence 999999999999999999999877744311 111 112237788999999999999999999888877665544444
Q ss_pred hHH-HHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002638 203 AFQ-KLCARICKLLS-NQNFMAKASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHS 277 (898)
Q Consensus 203 yL~-~LlPRLlkLLk-s~~~kaK~alL~aIgSLA~vG--a~~~pyld-~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av 277 (898)
.++ .++|.|..+|. ++.-.+|..+.=.|+=|. +| ......++ .++|.|..+|...+..+||.|+=+++.++..-
T Consensus 317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt-AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 317 VINSGALPVLSNLLSSSPKESIKKEACWTISNIT-AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh-cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 444 58899999998 565555554444444443 24 22332333 68999999999999999999999999987766
Q ss_pred chHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638 278 SNLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKV 321 (898)
Q Consensus 278 ge~L~Py~--~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~~ 321 (898)
-..-..|+ ..||+.|-....=++..+-.+++.+|+....++..+
T Consensus 396 ~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 396 TPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred CHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 65555575 446776654443333333567788888888777553
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.47 E-value=1.5e-05 Score=96.43 Aligned_cols=224 Identities=16% Similarity=0.171 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHH-HHHHHHhchhchh
Q 002638 39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLL-ALVCELHSELTST 116 (898)
Q Consensus 39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKe-AIlLL-G~IAEg~gd~I~P 116 (898)
.+++.-++.+|+--. .|..+.|...|-.++- + .++.||++|++...++ +.|++ -+..| .+|.....+.+.|
T Consensus 856 ~e~~~~iieaf~sp~-edvksAAs~ALGsl~v--g--nl~~yLpfil~qi~sq--pk~QyLLLhSlkevi~~~svd~~~~ 928 (1233)
T KOG1824|consen 856 NELKDTIIEAFNSPS-EDVKSAASYALGSLAV--G--NLPKYLPFILEQIESQ--PKRQYLLLHSLKEVIVSASVDGLKP 928 (1233)
T ss_pred hhhHHHHHHHcCCCh-HHHHHHHHHHhhhhhc--C--chHhHHHHHHHHHhcc--hHhHHHHHHHHHHHHHHhccchhhh
Confidence 355556666665443 6688888888877775 2 4788999998887442 22333 22233 3344445577899
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
+.++|+..+.+...-.+-.+|+..++++|.|+-.= + ..+++.|-..+....+.....+..|.-=.+-+-
T Consensus 929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e--p---------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~ 997 (1233)
T KOG1824|consen 929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE--P---------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQ 997 (1233)
T ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC--h---------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCC
Confidence 99999999999999999999999999999987433 2 347778888887666666666666655445444
Q ss_pred CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHh------------------hCC
Q 002638 197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHEC------------------LGS 257 (898)
Q Consensus 197 ~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~------------------Lsd 257 (898)
+..+.+|+.+-+..+++++++|+.++|..+|.+++|++.-. ......++.++|.|.+- ..|
T Consensus 998 p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VD 1077 (1233)
T KOG1824|consen 998 PQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVD 1077 (1233)
T ss_pred CCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCcccccc
Confidence 55666899999999999999999999999999999988544 34455666777765432 235
Q ss_pred CCHHHHHHHHHHHHHHHHhcchH
Q 002638 258 TDWATRKAAADALSALALHSSNL 280 (898)
Q Consensus 258 dDW~vRKaA~EaL~sLA~avge~ 280 (898)
+-..+||+|.||++++...-=+.
T Consensus 1078 dgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1078 DGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhhhhh
Confidence 67899999999999998876543
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.47 E-value=1.4e-05 Score=104.66 Aligned_cols=256 Identities=15% Similarity=0.194 Sum_probs=184.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhh---HHHHHHHHHHh
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTH---VTKIISHIVKR 128 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~Ph---LpkIL~~Ilrr 128 (898)
+|.++++.|+..|-.++..-+.+.++.++..|. ++++..+..++.+||.+....... +... -...++.|+..
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L 617 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL 617 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence 678899999999999987555555766665543 456788888999999997754432 1111 13578899999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC-chhHHH-
Q 002638 129 LKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP-VVAFQK- 206 (898)
Q Consensus 129 LkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~-~~yL~~- 206 (898)
|+.++..++..|+|+|..|+..-.+.. ..-.....++||+..|...+..++..||.||..+..+....- ..++..
T Consensus 618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~---~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G 694 (2102)
T PLN03200 618 LSSSKEETQEKAASVLADIFSSRQDLC---ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED 694 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCChHHH---HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 999999999999999999986331110 001234578999999998899999999999999997553322 233443
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh
Q 002638 207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVID 283 (898)
Q Consensus 207 LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~-~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e~L~P 283 (898)
.+|.|+++|++++..++..++.+|..++..+... .-.-...++.|.++|.+.+...|+.|+-+|..|+...+ +.|..
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~ 774 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD 774 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 7899999999999999999999999998654111 11123558999999999999999999999999999988 55766
Q ss_pred hHHHH------HHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 284 GATST------LTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 284 y~~~~------I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
|+..+ +.+|...-+|.+. ..+||+....++..
T Consensus 775 ~~~~~g~v~~l~~~L~~~~~~~~~-----~~~al~~l~~l~~~ 812 (2102)
T PLN03200 775 SVQCRGTVLALVDLLNSTDLDSSA-----TSEALEALALLART 812 (2102)
T ss_pred HHHHhCcHHHHHHHHhcCCcchhh-----HHHHHHHHHHHHhh
Confidence 65444 3344444443322 23566666666654
No 31
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.46 E-value=1.4e-07 Score=77.72 Aligned_cols=55 Identities=22% Similarity=0.401 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 002638 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSL 147 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~L 147 (898)
|.+|+.|+.+||.+++.+++.+.||++++++.++..|+|+++.||.+|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999975
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.45 E-value=3.2e-05 Score=90.78 Aligned_cols=262 Identities=16% Similarity=0.213 Sum_probs=177.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhH--HHH
Q 002638 45 ILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV--TKI 121 (898)
Q Consensus 45 ll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhL--pkI 121 (898)
+..||+. .+++....+...|+.+...+.+.. ++.+.+.|...+.++++.+|+-++..++.+++.. +....-+ ..+
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccH
Confidence 4455553 478888899999999999887765 8889999999899999999999999999988643 3322222 568
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638 122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP 200 (898)
Q Consensus 122 L~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~-~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~ 200 (898)
++.|+..|.|+|..|..+|..+|..|+.+- .+. ...++ .++..|...+...+..+.--+..++..+....++.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~---~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~- 194 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGL---EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA- 194 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhH---HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH-
Confidence 999999999999999999999999998743 111 01111 12455555555557777766666666665433222
Q ss_pred chhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHH--HHHHHHHHhhCC----C-CHHHH-HHHHHHH
Q 002638 201 VVAFQK--LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLE--PLLQSIHECLGS----T-DWATR-KAAADAL 270 (898)
Q Consensus 201 ~~yL~~--LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld--~lLp~L~e~Lsd----d-DW~vR-KaA~EaL 270 (898)
..+... +++++++.|++++.-+|..+++++..++... ....|+. .+++.|.+.+.+ + --.+. -..+..+
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 234443 8999999999999999999999999997521 1122222 244555555443 3 11112 1223566
Q ss_pred HHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638 271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 271 ~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La 318 (898)
+.|+...+..+....+.++..+..+-...+...+.+ |++.|..|+
T Consensus 274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~---A~dtlg~ig 318 (503)
T PF10508_consen 274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREV---AFDTLGQIG 318 (503)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHH---HHHHHHHHh
Confidence 677777554444444667777776655666766776 677777777
No 33
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.42 E-value=3.3e-05 Score=88.34 Aligned_cols=224 Identities=14% Similarity=0.185 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhchhc
Q 002638 37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQE-SLPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELT 114 (898)
Q Consensus 37 ~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe-~Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~gd~I 114 (898)
.+.++.++++.......+...+..+++.|-.+++.++.+ .+..+|..+.... .......|..++.++.-++.+.--.-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 455677888888777777778888888888888877544 3777777777665 45567778888888877777655444
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE 194 (898)
.|.-.+++..++..|.| +.+...++.+++.|.... +.... ..+...+++|+.
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~-~~~l~---~~~~a~vklLyk---------------------- 317 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDS-DDVLN---KENHANVKLLYK---------------------- 317 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc-HHhcC---ccccchhhhHHh----------------------
Confidence 56666667777777766 556666666666555543 10000 001111111110
Q ss_pred hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002638 195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSA 272 (898)
Q Consensus 195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~s 272 (898)
.-++..++|+|+..++..+...|...|.++..+.. +- ....++++.++|-|++.|.-+|..+|.+++++|..
T Consensus 318 ------QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 318 ------QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred ------HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 13577899999999988776688888889888864 44 66789999999999999999999999999999999
Q ss_pred HHHhcchHHHhhHHHHHHHHHh
Q 002638 273 LALHSSNLVIDGATSTLTVLEA 294 (898)
Q Consensus 273 LA~avge~L~Py~~~~I~~LE~ 294 (898)
+...-++.+.+|+..+|..|..
T Consensus 392 ~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 392 ILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999997753
No 34
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.40 E-value=5e-05 Score=88.28 Aligned_cols=268 Identities=18% Similarity=0.190 Sum_probs=189.0
Q ss_pred HHHHHHHH-HHHcC--CChhHHHHHHHHHHHHHhc-CCCCCHHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhc-hh
Q 002638 40 EMKQKILT-SLSKL--ADRDTHQIAIEDLEKTIQT-LSQESLPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHS-EL 113 (898)
Q Consensus 40 eLK~rll~-~L~KL--sDrDT~k~Aa~eLD~Ia~~-L~pe~Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~g-d~ 113 (898)
|.|++|-. +|+-| .......+|++.|..|+.- |+....|.|+..+..+. ..+....+.+++..+|++|+.-. +.
T Consensus 90 E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~ 169 (858)
T COG5215 90 ESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED 169 (858)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHH
Confidence 44555443 33333 3344677888999999864 77777999998887765 45556789999999999999865 45
Q ss_pred chhhHHHHHHHHHHh-hcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKR-LKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK 191 (898)
Q Consensus 114 I~PhLpkIL~~Ilrr-LkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAk 191 (898)
+...-.-|+-.|+.+ ++. +++.||-|+..++..-...+ +..+.. +....-|+.-..++-..++..+|.+|+.||-|
T Consensus 170 li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv-~~nf~~-E~erNy~mqvvceatq~~d~e~q~aafgCl~k 247 (858)
T COG5215 170 LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV-QGNFCY-EEERNYFMQVVCEATQGNDEELQHAAFGCLNK 247 (858)
T ss_pred HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-HHhhcc-hhhhchhheeeehhccCCcHHHHHHHHHHHHH
Confidence 555555666666655 443 67899999988877643333 221211 12245567777788788899999999999999
Q ss_pred HHHhcCCCCchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHh----cc---ccCc-----------ccHHHHHHHHH
Q 002638 192 MVECASDPPVVAFQK-LCARICKLLSNQNFMAKASLLPVVGSLSQ----VG---AIAP-----------QSLEPLLQSIH 252 (898)
Q Consensus 192 iIE~a~d~~~~yL~~-LlPRLlkLLks~~~kaK~alL~aIgSLA~----vG---a~~~-----------pyld~lLp~L~ 252 (898)
+.---.+.+.+|+.+ |...+...+++++.+++-.+++.-+++.. +. +.++ ..+..++|.|+
T Consensus 248 im~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL 327 (858)
T COG5215 248 IMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELL 327 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHH
Confidence 986544444567776 45566677899999999888888777641 11 1222 22556899998
Q ss_pred HhhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002638 253 ECLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312 (898)
Q Consensus 253 e~Lsd-------dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALe 312 (898)
..|.. +||..-++|.-||--.|...|+++. .+++...|..-....-.-||++.-|+.
T Consensus 328 ~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~---~pVl~FvEqni~~~~w~nreaavmAfG 391 (858)
T COG5215 328 SLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM---RPVLGFVEQNIRSESWANREAAVMAFG 391 (858)
T ss_pred HHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH---HHHHHHHHHhccCchhhhHHHHHHHhh
Confidence 88753 7899999999999999999997654 447788876665666667888766554
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.39 E-value=2.1e-05 Score=92.31 Aligned_cols=241 Identities=15% Similarity=0.216 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCH--HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh
Q 002638 40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESL--PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST 116 (898)
Q Consensus 40 eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~-pe~L--p~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P 116 (898)
++.+..+..|..- +..-.++.+|...+...+ -+.+ +.++.||... +...=..++.+|+.+..... +..
T Consensus 3 ~~~~~~l~~l~~~---~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~--~~~ 73 (503)
T PF10508_consen 3 EWINELLEELSSK---AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALS--PDS 73 (503)
T ss_pred hHHHHHHHHHhcc---cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccC--HHH
Confidence 3445555555444 333444445554443222 1122 3345555532 22222334444444443221 222
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
-++.+.+++.++|.+|++.||.-|++.|++++.+-.... + --.-..+++.++.+|.+.+..|...|+.+|.+++...
T Consensus 74 l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~-~--~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~ 150 (503)
T PF10508_consen 74 LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA-Q--LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP 150 (503)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH-H--HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence 389999999999999999999999999998875431100 0 0012457888999999999999999999999999642
Q ss_pred CCCCchhHHHH-----HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH--HHHHHHHhhCCCCHHHHHHHHHH
Q 002638 197 SDPPVVAFQKL-----CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP--LLQSIHECLGSTDWATRKAAADA 269 (898)
Q Consensus 197 ~d~~~~yL~~L-----lPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~--lLp~L~e~LsddDW~vRKaA~Ea 269 (898)
++++.| ++.|..++.+.+..+|.-+|+++..++........++.. +++.++..|.++|--+|..|+|+
T Consensus 151 -----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 151 -----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred -----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 233333 888999998866667777888888887655333334443 88899999999999999999999
Q ss_pred HHHHHHhcchHHHhh------HHHHHHHHHhhhcCC
Q 002638 270 LSALALHSSNLVIDG------ATSTLTVLEACRFDK 299 (898)
Q Consensus 270 L~sLA~avge~L~Py------~~~~I~~LE~~RfDK 299 (898)
|+.||. .... ..| ++.+++.+.....|.
T Consensus 226 l~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 226 LSELAE-TPHG-LQYLEQQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred HHHHHc-ChhH-HHHHHhCCHHHHHHHHHhccccCC
Confidence 999999 3322 223 244455555555444
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6.5e-05 Score=93.11 Aligned_cols=253 Identities=13% Similarity=0.152 Sum_probs=196.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH
Q 002638 45 ILTSLSKLADRDTHQIAIEDLEKTIQT-----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT 119 (898)
Q Consensus 45 ll~~L~KLsDrDT~k~Aa~eLD~Ia~~-----L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp 119 (898)
+..-+.+-++.-+|+-+..-|+.+... +....+..+...|.+.+++...+.|+..+.+|..|.+.|+.....+++
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 333444445677999999999999885 222236667777888888889999999999999999999977777889
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHH--HHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc-
Q 002638 120 KIISHIVKRLKDSDSGMKEACRDSIGSLS--KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA- 196 (898)
Q Consensus 120 kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA--~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a- 196 (898)
+.++-++=.++|.+-.-|+.+-.+|-.|. ...++.+.+.....+..|+.-|.+.+......+-.....|+..++.+-
T Consensus 738 k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 738 KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 99998888889988777777666665555 333344433335678889999988886555555555477788888664
Q ss_pred CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 197 SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 197 ~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
.....+++++|+..++-.|.+.+.++..+++..|..++..- ....+|++.+||.++..+.+-.-.+|+.+--.|-.|.
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44556899999999999999999998889999988887533 4578999999999999888878899999999999999
Q ss_pred Hhcc-hHHHhhHHHH-HHHHHhhhc
Q 002638 275 LHSS-NLVIDGATST-LTVLEACRF 297 (898)
Q Consensus 275 ~avg-e~L~Py~~~~-I~~LE~~Rf 297 (898)
.-.| +.+.+|++.. .+.|...|-
T Consensus 898 rkfg~~eLe~~~pee~~klL~nIRK 922 (1176)
T KOG1248|consen 898 RKFGAEELESFLPEEDMKLLTNIRK 922 (1176)
T ss_pred HHhCHHHHHhhCHHHHHHHHHHHHH
Confidence 9999 8888887654 345554443
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=98.38 E-value=9.4e-05 Score=90.48 Aligned_cols=216 Identities=17% Similarity=0.179 Sum_probs=137.2
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002638 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG 160 (898)
Q Consensus 81 Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~ 160 (898)
++.|..-..++++.+|--|++.|+.| .+...++.++..|.+.|.|++|.||.+|+-++..+....-+-.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~I------r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv----- 175 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCI------RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF----- 175 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcC------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-----
Confidence 44444444555666666666655332 1234567788999999999999999999999999865441100
Q ss_pred hhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 002638 161 TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA 240 (898)
Q Consensus 161 ~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~ 240 (898)
.-..+++-|.+.|.++++.|+..|+.+|..+++..++. .......+.+|+..|..-+.-.+..+|+++.... ...
T Consensus 176 -~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~ 250 (746)
T PTZ00429 176 -YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSD 250 (746)
T ss_pred -cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC
Confidence 01236677788889999999999999999999865542 2445666777777776545445556666664321 112
Q ss_pred cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638 241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 241 ~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel 313 (898)
..-...++..+..+|.+.+..+--+|+.++..+..... +.+......+...+-.. ..+...+|=++++.+.+
T Consensus 251 ~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~ 323 (746)
T PTZ00429 251 KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHA 323 (746)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHH
Confidence 22345788888888888888998888888888775543 32332222222222222 23444455565555543
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.32 E-value=4.1e-06 Score=78.11 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=73.9
Q ss_pred HHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChh
Q 002638 224 ASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP 302 (898)
Q Consensus 224 ~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKp 302 (898)
.+.|-++.+++ +.+.....|++.+||+++.++.|+||.+|-.|||+|+.|+...++.+.+|+.++..+|-..-.|.++.
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~ 83 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN 83 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 34455566653 45556889999999999999999999999999999999999999888999999999999999999999
Q ss_pred hHHHH
Q 002638 303 VRDSM 307 (898)
Q Consensus 303 VRD~A 307 (898)
||..|
T Consensus 84 Vr~~a 88 (97)
T PF12755_consen 84 VRSAA 88 (97)
T ss_pred HHHHH
Confidence 99865
No 39
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.31 E-value=2.4e-05 Score=95.73 Aligned_cols=199 Identities=16% Similarity=0.164 Sum_probs=168.3
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~ 155 (898)
++.+-..|...+.+.+|..|++|+.-|..+.+--. +....|..-+...+.-+++|....|-..+..+|..|+..+ ...
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l-r~~ 329 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL-RPL 329 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc-chh
Confidence 66666677777889999999999999999998877 5577888888889999999999999999999999999988 322
Q ss_pred ccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638 156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~ 235 (898)
+ ..+...+++.||+.+.+....+-.++-.|+.++++. -.|..+.+-++.++++.+.++|.-+...++....
T Consensus 330 ~---~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 330 F---RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred h---HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 2 355677889999999999999999999999999982 2377899999999999999999988888877764
Q ss_pred -cc-c-cCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch-HHHhhH
Q 002638 236 -VG-A-IAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN-LVIDGA 285 (898)
Q Consensus 236 -vG-a-~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge-~L~Py~ 285 (898)
.+ . .+..-+..++|.+.....|.+-.+|++|.++++.|...+|+ .|.-|+
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33 2 35677888999999999999999999999999999999994 444443
No 40
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.29 E-value=0.0001 Score=87.60 Aligned_cols=168 Identities=11% Similarity=0.124 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V 136 (898)
.+.......-.++..|.=+.+.+||..++.+- ..|..|.-+|++.-.||...|-.+.|||..++.+|-.+|.|-..-|
T Consensus 492 VRnttarafavvasalgip~llpfLkavc~Sk--kSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkV 569 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALGIPALLPFLKAVCGSK--KSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKV 569 (1172)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHhccc--cchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhh
Confidence 45555555566777775445667777777433 3599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh-cCCCCchh----HHHHHHHH
Q 002638 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC-ASDPPVVA----FQKLCARI 211 (898)
Q Consensus 137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~-a~d~~~~y----L~~LlPRL 211 (898)
|-.++.+++.|++.. .+ .+-+.+..+|+||-+.+...--.+- .++-+.+-. ++..+.+| -..+|-.+
T Consensus 570 R~itAlalsalaeaa-~P---ygie~fDsVlkpLwkgir~hrgk~l----aafLkAigyliplmd~eya~yyTrevmlil 641 (1172)
T KOG0213|consen 570 RTITALALSALAEAA-TP---YGIEQFDSVLKPLWKGIRQHRGKEL----AAFLKAIGYLIPLMDAEYASYYTREVMLIL 641 (1172)
T ss_pred hhHHHHHHHHHHHhc-CC---cchHHHHHHHHHHHHHHHHccChHH----HHHHHHHhhccccccHHHHHHhHHHHHHHH
Confidence 999999999999988 22 2336699999999988843322222 222333322 23333333 44678888
Q ss_pred HHHhcCCchhhHHHHHHHHHHHH
Q 002638 212 CKLLSNQNFMAKASLLPVVGSLS 234 (898)
Q Consensus 212 lkLLks~~~kaK~alL~aIgSLA 234 (898)
++-+.+|+...|...|.++..+.
T Consensus 642 ~rEf~sPDeemkkivLKVv~qcc 664 (1172)
T KOG0213|consen 642 IREFGSPDEEMKKIVLKVVKQCC 664 (1172)
T ss_pred HHhhCCChHHHHHHHHHHHHHHh
Confidence 88888888777777777666654
No 41
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00011 Score=92.60 Aligned_cols=238 Identities=15% Similarity=0.145 Sum_probs=174.8
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~ 155 (898)
++-+|.-|+..+.+..|++|+++.++|.-+..|+. +.+..+||+|.-.++|...|-.-.||.|+-.+...|+..+++-+
T Consensus 1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444445555688899999999999999999999 55899999999999999999999999999888777777776531
Q ss_pred ----ccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhh--------
Q 002638 156 ----EENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMA-------- 222 (898)
Q Consensus 156 ----~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~ka-------- 222 (898)
...+.+....+||-|++-= ...-+.|-..+...+-+++..++..+.||+++|+|-|+.++...-.++
T Consensus 1117 d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 1122244555555554321 345677888888999999999999999999999999999998652221
Q ss_pred ---HHHHHHHHHHHHhcc-c------cCc-----ccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002638 223 ---KASLLPVVGSLSQVG-A------IAP-----QSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGAT 286 (898)
Q Consensus 223 ---K~alL~aIgSLA~vG-a------~~~-----pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge~L~Py~~ 286 (898)
...+++....=+.-+ . ... ..++.++|.+.+.+.. -...+|..++..+..|+..+|.-+.||.+
T Consensus 1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg 1276 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG 1276 (1702)
T ss_pred hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh
Confidence 112333333222111 1 112 3345677778887655 34678999999999999999999999999
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638 287 STLTVLEACRFDKIKPVRDSMNEALQLW 314 (898)
Q Consensus 287 ~~I~~LE~~RfDKvKpVRD~A~eALelW 314 (898)
..+.+|-..--|+...||-+-.-|+...
T Consensus 1277 Kll~al~~g~~dRNesv~kafAsAmG~L 1304 (1702)
T KOG0915|consen 1277 KLLRALFPGAKDRNESVRKAFASAMGYL 1304 (1702)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 9999999888899988876554454443
No 42
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00013 Score=83.94 Aligned_cols=259 Identities=17% Similarity=0.218 Sum_probs=191.2
Q ss_pred HcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---hhHHHHHHHHH
Q 002638 50 SKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHIV 126 (898)
Q Consensus 50 ~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---PhLpkIL~~Il 126 (898)
..++|.++++.++..|...+..-.+-.++-+|..+..++.+.+|..|-.-+- .+++.-+..+. +-|..++-.+.
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~A---f~ael~~~~~l~~~~lL~s~~~~la 264 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIA---FFAELKRPKELDKTGLLGSVLLSLA 264 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHH---HHHHHhCcccccccccHHHHHHHHH
Confidence 3457889999999999988876655468888888888888888877765543 45566665543 56888899999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc-CCCCchhH
Q 002638 127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA-SDPPVVAF 204 (898)
Q Consensus 127 rrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a-~d~~~~yL 204 (898)
.+..||+..+|.-|+..||..++.+-+. ...+.+.++..++-.| ++.|+.||--|..||..+.|-. .+....|+
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~k----v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDK----VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHH----HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 9999999999999999999999886332 2356777888888888 4568999999999999999986 55667899
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc---c-cCc------------------c-------------------
Q 002638 205 QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG---A-IAP------------------Q------------------- 242 (898)
Q Consensus 205 ~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG---a-~~~------------------p------------------- 242 (898)
-.+.-|+..++++...++|.+++.+.|.++. .| . .|. |
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~r 420 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVR 420 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHH
Confidence 9999999999999999999988888888753 22 1 111 1
Q ss_pred -----cHH----HHHHHHH---------------H---h-------hCCCCH-HHHHHHHHHHHHHHHhcchHHHhhH--
Q 002638 243 -----SLE----PLLQSIH---------------E---C-------LGSTDW-ATRKAAADALSALALHSSNLVIDGA-- 285 (898)
Q Consensus 243 -----yld----~lLp~L~---------------e---~-------LsddDW-~vRKaA~EaL~sLA~avge~L~Py~-- 285 (898)
|++ ..++... + + +-...| .+|.+|.-.-......+-+..-++.
T Consensus 421 ke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~ 500 (533)
T KOG2032|consen 421 KELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADG 500 (533)
T ss_pred HHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 111 1111100 0 0 112357 6777666666666666666666665
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002638 286 TSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (898)
Q Consensus 286 ~~~I~~LE~~RfDKvKpVRD~A~eALelWK 315 (898)
..+...+...++|.-+.|++.+.+|++...
T Consensus 501 ~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 501 LQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 444778899999999999999999998754
No 43
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.22 E-value=3.2e-05 Score=95.55 Aligned_cols=227 Identities=18% Similarity=0.226 Sum_probs=157.1
Q ss_pred hhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch
Q 002638 34 SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE 112 (898)
Q Consensus 34 ~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd 112 (898)
.+.-++-+.--|..|+.-+.-+++..-|++.|..++..++.|. |..+|+++.--..++...||-.|+..|..+...-.+
T Consensus 416 ~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 416 KEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD 495 (1431)
T ss_pred cccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC
Confidence 3444555667788899999889999999999999999886554 777777777666788899999998887666544322
Q ss_pred h----chhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHH--HhcCCH-hH---
Q 002638 113 L----TSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA--MMEQNK-GV--- 181 (898)
Q Consensus 113 ~----I~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ea--L~eqnk-~V--- 181 (898)
. .-=|-++|+|.|...+.| ....||-|-+..|+.||.-..+ +-++-..+-.+ +.+.|- ..
T Consensus 496 ~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r---------Fle~~q~~~~~g~~n~~nset~~~~ 566 (1431)
T KOG1240|consen 496 IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR---------FLELTQELRQAGMLNDPNSETAPEQ 566 (1431)
T ss_pred CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---------HHHHHHHHHhcccccCccccccccc
Confidence 1 223678899999999999 6779999999999999987722 22222222222 122211 11
Q ss_pred -HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCC
Q 002638 182 -QSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTD 259 (898)
Q Consensus 182 -QegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~LsddD 259 (898)
+.+-..+|-..+| ..+..+|.++...+|.++|..|.-|- -.|. ...=+.+|+.|.-+|.|.|
T Consensus 567 ~~~~~~~~L~~~V~--------------~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~iLshLiTfLNDkD 630 (1431)
T KOG1240|consen 567 NYNTELQALHHTVE--------------QMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVILSHLITFLNDKD 630 (1431)
T ss_pred ccchHHHHHHHHHH--------------HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccchHHHHHHHhcCcc
Confidence 1112222222222 33456667777789999999988773 2341 1123468899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc-----hHHHhhH
Q 002638 260 WATRKAAADALSALALHSS-----NLVIDGA 285 (898)
Q Consensus 260 W~vRKaA~EaL~sLA~avg-----e~L~Py~ 285 (898)
|.+|.+-.|.|..|+..+| +.+.|++
T Consensus 631 w~LR~aFfdsI~gvsi~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHHHHhhccceEEEEeeeeHHHHHHHHH
Confidence 9999999999999999988 3455554
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=98.16 E-value=0.00038 Score=85.30 Aligned_cols=251 Identities=14% Similarity=0.128 Sum_probs=150.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChH
Q 002638 56 DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG 135 (898)
Q Consensus 56 DT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~ 135 (898)
-.|..|+..|-.|. .++.++.++..|.....+.++.|||.|++++..+-..+++.+.. ..+++.+...|.|+++.
T Consensus 120 ~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 120 VVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNPV 194 (746)
T ss_pred HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCcc
Confidence 35666665554443 35567777888888888999999999999999998877766421 12344555668999999
Q ss_pred HHHHHHHHHHHHHHHH--------------hc---c----------------cccCCchhHHhhHHHHHHHHhcCCHhHH
Q 002638 136 MKEACRDSIGSLSKLY--------------LN---G----------------KEENNGTVVGLFVKPLFEAMMEQNKGVQ 182 (898)
Q Consensus 136 VR~Ac~~tLG~LA~~l--------------ik---~----------------~~e~~~~~~~~lL~pL~eaL~eqnk~VQ 182 (898)
|...|..++-.+.... +. + .+++ ......++..+...|...|..|.
T Consensus 195 Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred HHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHH
Confidence 9888877766664321 00 0 0010 11123345555555556788888
Q ss_pred HHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCc-------------------
Q 002638 183 SGAAMCMAKMVECAS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAP------------------- 241 (898)
Q Consensus 183 egAasALAkiIE~a~-d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~------------------- 241 (898)
-+|+.++-.+..... +....++.+|.+-++.++. ...-+|-.+|..|..++... ..|.
T Consensus 274 l~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~ 352 (746)
T PTZ00429 274 MGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLE 352 (746)
T ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHH
Confidence 777777776654321 1111233344444455543 33445656666665554322 2222
Q ss_pred -----------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHH
Q 002638 242 -----------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEA 310 (898)
Q Consensus 242 -----------pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eA 310 (898)
..++.++.-|.+++.+.|-..++.++.+|+.+|...+. ....||+.|.....++..- +.++
T Consensus 353 KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~~~~----v~e~ 424 (746)
T PTZ00429 353 KLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRRPEL----LPQV 424 (746)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCchh----HHHH
Confidence 23344556677788888999999999999999987765 3455666554443344442 3345
Q ss_pred HHHHHHhhcCC
Q 002638 311 LQLWKKIAGKV 321 (898)
Q Consensus 311 LelWK~La~~~ 321 (898)
+...+.|-..|
T Consensus 425 i~vik~Ilrky 435 (746)
T PTZ00429 425 VTAAKDIVRKY 435 (746)
T ss_pred HHHHHHHHHHC
Confidence 66666665443
No 45
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.13 E-value=0.00013 Score=83.47 Aligned_cols=202 Identities=14% Similarity=0.134 Sum_probs=143.4
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHH-HHHHHHHHhchhchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIl-LLG~IAEg~gd~I~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
.......|.+...+.....|++|+. +.+.++++--..=..|..+|+-.++..|.| .+..++.-|...|+-+...=..-
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 4444444444455668889999998 888888875555578999999999999999 67788888888887776654221
Q ss_pred cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638 155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (898)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA 234 (898)
-+ +.....+.-++++-.+..+.|-..|..|+.+++-. ..+...+-.++|.++. .+++.-.++|.++--++
T Consensus 365 l~----DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las--~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 365 LF----DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS--HLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLF 434 (516)
T ss_pred hh----chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh--hCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHH
Confidence 11 11223344445555555565665566665555543 2223445566666663 56665557777777776
Q ss_pred h-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHH
Q 002638 235 Q-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST 288 (898)
Q Consensus 235 ~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~ 288 (898)
. +- +.+...++.++|++++...+..-.+||.|+=||++|...+| +.+.||+..+
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 3 33 56678899999999999999999999999999999999999 9999998665
No 46
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.0021 Score=80.36 Aligned_cols=243 Identities=17% Similarity=0.180 Sum_probs=177.4
Q ss_pred HHHHHHHHHHh---cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hchhchhhHHHHHHHHHHhhcCCCh
Q 002638 60 IAIEDLEKTIQ---TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHVTKIISHIVKRLKDSDS 134 (898)
Q Consensus 60 ~Aa~eLD~Ia~---~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg--~gd~I~PhLpkIL~~IlrrLkDpDs 134 (898)
..+..||.++- ..+.+.+..++.......++..+.+++-+..+|+.++.+ +..+...++..|...+...+++...
T Consensus 632 ~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~ 711 (1176)
T KOG1248|consen 632 KTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS 711 (1176)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch
Confidence 34445555443 334445777665555555666788999999999999998 4445788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH--Hhc----CCCCchhHHHHH
Q 002638 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV--ECA----SDPPVVAFQKLC 208 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI--E~a----~d~~~~yL~~Ll 208 (898)
.+|...+.++-.|...+-.+ +-..++..++-++=.+.+.|...-..|+.||--++ ... .++....++..+
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e----~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAE----HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 99999999999998887211 11223333333333335667777778999988888 332 222244788888
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002638 209 ARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGA 285 (898)
Q Consensus 209 PRLlkLLks~~~kaK~alL~aIgSLA~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~ 285 (898)
+.|...|-+.....++.-|-+++.+.. .+ -...+++..++..+.-+|......+|++|+..+..+....+ ..+.||.
T Consensus 788 ~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 788 SIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 888888777666655554777777753 23 34477888888888899999999999999999999999999 7899999
Q ss_pred HHHHHHHHhhhcCCChhhHHH
Q 002638 286 TSTLTVLEACRFDKIKPVRDS 306 (898)
Q Consensus 286 ~~~I~~LE~~RfDKvKpVRD~ 306 (898)
+.+|..+.....|+--.+|-.
T Consensus 868 ~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 868 EELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHHHHHHHHHhhhHHHHHH
Confidence 999998887777744445544
No 47
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.01 E-value=0.00078 Score=74.81 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=136.5
Q ss_pred CCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhH
Q 002638 90 DPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (898)
Q Consensus 90 s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL 167 (898)
+.+...|++++..|-.+...+. +.+..+...|+..+++.|+=..+.=+..++.+++-|+-.+ .. .+...+++..+.
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl-g~-g~~~~ei~~~~~ 131 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL-GA-GEDSEEIFEELK 131 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc-CC-CccHHHHHHHHH
Confidence 3457899999999888876655 6688889999999999999888766777788888888776 11 233457788888
Q ss_pred HHHHHHHhcCCH--hHHHHHHHHHHHHHHhcCCCCchhH--HHHHHHHH--HHhcCC----------chhhHHHHHHHHH
Q 002638 168 KPLFEAMMEQNK--GVQSGAAMCMAKMVECASDPPVVAF--QKLCARIC--KLLSNQ----------NFMAKASLLPVVG 231 (898)
Q Consensus 168 ~pL~eaL~eqnk--~VQegAasALAkiIE~a~d~~~~yL--~~LlPRLl--kLLks~----------~~kaK~alL~aIg 231 (898)
++|...+.+... .+..+++.||+-++=-.......+. -..|.-++ -+++.. ...+..++|.+-+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 888888866543 3434455566665543222111121 12333111 122221 2345667777777
Q ss_pred HHHh-cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch----HHHhhHHHHHHHHHhhhcC
Q 002638 232 SLSQ-VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN----LVIDGATSTLTVLEACRFD 298 (898)
Q Consensus 232 SLA~-vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge----~L~Py~~~~I~~LE~~RfD 298 (898)
-|+. +. ..+..+++..+|.|.++|.++|-.+|.+|.|+|+.|.....+ ...+..+.+++.|...--|
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~d 284 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATD 284 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHh
Confidence 6653 22 224467788999999999999999999999999988776662 3344566666655543333
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.95 E-value=1.9e-05 Score=71.98 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=85.8
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
.++.++.+|. +.++.+|+.++.+|++++....+....++. .+++.+++.|.|+++.|+..|+++++.|+......
T Consensus 8 ~i~~l~~~l~----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLS----SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHH----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 4666666665 445899999999999999875555444455 88999999999999999999999999998654110
Q ss_pred cccCCchhH-HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638 155 KEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 155 ~~e~~~~~~-~~lL~pL~eaL~eqnk~VQegAasALAkiIE 194 (898)
....+ ..+++.|++.|.+.+..++..|+.+|..+++
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 01112 2378889999988899999999999998875
No 49
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.92 E-value=0.00043 Score=70.52 Aligned_cols=93 Identities=16% Similarity=0.274 Sum_probs=75.8
Q ss_pred ChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHH
Q 002638 92 KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF 171 (898)
Q Consensus 92 k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ 171 (898)
+|.+|..++.++|-++-.|+..+.||+ +.+..+|+|+++.||..|.-++..|...-.- ..-..++..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~----~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-------k~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYL----PNLYKCLRDEDPLVRKTALLVLSHLILEDMI-------KVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-------eehhhhhHHHH
Confidence 467999999999999999998887775 5566899999999999999998887654211 22344556777
Q ss_pred HHHhcCCHhHHHHHHHHHHHHHHh
Q 002638 172 EAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 172 eaL~eqnk~VQegAasALAkiIE~ 195 (898)
.+|.|.|+.|+..|..+|..+...
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999875
No 50
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.91 E-value=3.6e-05 Score=70.22 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=87.7
Q ss_pred hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cCccc
Q 002638 166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IAPQS 243 (898)
Q Consensus 166 lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa-~~~py 243 (898)
+++.|++.|.+.++.+...|+.||..++...+.....++. .++|.|+++|.+++.+++..++.+++.++.... ....+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 7788889998889999999999999999864333334555 689999999999999999999999999875431 11112
Q ss_pred H-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 244 L-EPLLQSIHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 244 l-d~lLp~L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
. ..+++.|.+++.+.+..+|+.|+.+|..|+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 237889999999999999999999999875
No 51
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00021 Score=78.64 Aligned_cols=174 Identities=17% Similarity=0.163 Sum_probs=132.2
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~ 156 (898)
-..-|...+..+.+.+|...=.++..+-.+++.|.+.+-+.|.+++-+|++.++.+.+.|-.++|-|++.|++.+-.
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--- 162 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--- 162 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---
Confidence 44556666666778899999999999999999999999999999999999999999999999999999999999932
Q ss_pred cCCchhHHhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 002638 157 ENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS 232 (898)
Q Consensus 157 e~~~~~~~~lL~pL~eaL----~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgS 232 (898)
.+..-+..|+-.| .+.|.-|-+.|--||-+++..... .+++++|+.++.|.+..++.-.--|...
T Consensus 163 -----~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 163 -----SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred -----HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 2444666666666 345788999999999999986532 2477777878887666655433333332
Q ss_pred H-Hhcc--ccCcccHHHHHHHHHHhhCCCCHHHHH
Q 002638 233 L-SQVG--AIAPQSLEPLLQSIHECLGSTDWATRK 264 (898)
Q Consensus 233 L-A~vG--a~~~pyld~lLp~L~e~LsddDW~vRK 264 (898)
. +..| ....+|+..+++.+.+-+.+.=..+|+
T Consensus 232 ~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~ 266 (334)
T KOG2933|consen 232 CVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELRE 266 (334)
T ss_pred cceeccccchhhHhHHHHHHHHHhhhccccccccc
Confidence 2 3333 455678888888888887775544443
No 52
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0025 Score=78.50 Aligned_cols=182 Identities=11% Similarity=0.172 Sum_probs=130.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhhhcC--------CCChhhHHHHHHHHHHHHHHhchh--chhhHHHH-HHHHHHhhcCC
Q 002638 64 DLEKTIQTLSQESLPMLLNCLYESSN--------DPKPAVKKESVRLLALVCELHSEL--TSTHVTKI-ISHIVKRLKDS 132 (898)
Q Consensus 64 eLD~Ia~~L~pe~Lp~fLs~L~es~~--------s~k~~vRKeAIlLLG~IAEg~gd~--I~PhLpkI-L~~IlrrLkDp 132 (898)
-|-.++..=..+.|+.+|+++.+-.. ..++..+.-|++++|.+++...+. ....+++| +++|...+++|
T Consensus 395 ~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~ 474 (1010)
T KOG1991|consen 395 FLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP 474 (1010)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc
Confidence 34445443356678888888766543 334556666999999999887654 34566665 46899999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCC---CchhHHHHH
Q 002638 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP---PVVAFQKLC 208 (898)
Q Consensus 133 Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~---~~~yL~~Ll 208 (898)
--.+|.-+||++++++..=++. .......+.....+|. ++.-.|+.-|+.||..++.+.... +.+.++.+|
T Consensus 475 ~g~Lrarac~vl~~~~~~df~d-----~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 475 YGYLRARACWVLSQFSSIDFKD-----PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhHHHHHHHHHHHHHHhccCCC-----hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 9999999999999999443332 2457778888888886 777889999999999999986543 457889999
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHH
Q 002638 209 ARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHE 253 (898)
Q Consensus 209 PRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e 253 (898)
..|+++.+.-... .+-.++-.++. .+....||...+++.|.+
T Consensus 550 q~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 550 QELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAE 592 (1010)
T ss_pred HHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence 9999988753222 34445555542 345566777777776654
No 53
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.82 E-value=8.3e-05 Score=82.36 Aligned_cols=216 Identities=14% Similarity=0.189 Sum_probs=148.2
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH---HHhchhchh--hHHHHHHHHHHhhcCCC---hHHHHHHHHHHH
Q 002638 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVC---ELHSELTST--HVTKIISHIVKRLKDSD---SGMKEACRDSIG 145 (898)
Q Consensus 74 pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA---Eg~gd~I~P--hLpkIL~~IlrrLkDpD---s~VR~Ac~~tLG 145 (898)
...+|.|+..|. +.+-.+|+.++-+||+|| ++|-+.+.. .|..++..+. .+. ++||++ -|++.
T Consensus 156 ~~AVPlfiqlL~----s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~----ss~~~ismlRn~-TWtLS 226 (526)
T COG5064 156 AGAVPLFIQLLS----STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL----SSAIHISMLRNA-TWTLS 226 (526)
T ss_pred CCchHHHHHHHc----CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH----hccchHHHHHHh-HHHHH
Confidence 334677777666 445679999999999996 556666533 3555555444 332 466665 48888
Q ss_pred HHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchhhHH
Q 002638 146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKA 224 (898)
Q Consensus 146 ~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~ 224 (898)
.|++-= .| +..-..+...++.|+..+-.-++.|-.-||-|+.-+.+...+-+...|+ .+.+||+++|.|++.++..
T Consensus 227 NlcRGk-nP--~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt 303 (526)
T COG5064 227 NLCRGK-NP--PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT 303 (526)
T ss_pred HhhCCC-CC--CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC
Confidence 877654 22 2233567788999999998889999999999999998875444444566 3789999999999999988
Q ss_pred HHHHHHHHHHhcc-ccCcccH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhc
Q 002638 225 SLLPVVGSLSQVG-AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRF 297 (898)
Q Consensus 225 alL~aIgSLA~vG-a~~~pyl-d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py-----~~~~I~~LE~~Rf 297 (898)
.+|..+|-++... ......+ -.+++.+...|++..-.+||.||=+|+.|...--+.++-. ++.+|+.|....|
T Consensus 304 PalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~ 383 (526)
T COG5064 304 PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEY 383 (526)
T ss_pred HHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHH
Confidence 8888888876322 1111111 1244555566888777999999999998876555544422 4677788876666
Q ss_pred CCCh
Q 002638 298 DKIK 301 (898)
Q Consensus 298 DKvK 301 (898)
---|
T Consensus 384 k~kK 387 (526)
T COG5064 384 KIKK 387 (526)
T ss_pred HHHH
Confidence 4333
No 54
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.78 E-value=0.0023 Score=70.42 Aligned_cols=152 Identities=22% Similarity=0.281 Sum_probs=91.3
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCch
Q 002638 82 NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT 161 (898)
Q Consensus 82 s~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~ 161 (898)
..+.....+.++.+|..+...++.+.. ...++.+...|.|.++.||..+..++|.+-
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------------- 102 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELG------------- 102 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------------
Confidence 333333345578888888877655543 556777888888888888888888666332
Q ss_pred hHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh------------hHHHHHH
Q 002638 162 VVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM------------AKASLLP 228 (898)
Q Consensus 162 ~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k------------aK~alL~ 228 (898)
.+..+++|...|. +.+..|...|+.+|.++-+.. -+..++.++++.... ++.+++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3446777777776 688888888888888776532 133344444443311 1222111
Q ss_pred HHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 229 VVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 229 aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
.++. ..-....+.|.+.+.+.+..+|.+|+.+|+.+...
T Consensus 172 ~l~~---------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 172 ALGE---------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHH---------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 1111 11224445556666666666666666666665554
No 55
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.77 E-value=0.00018 Score=63.42 Aligned_cols=78 Identities=24% Similarity=0.409 Sum_probs=63.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH
Q 002638 89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (898)
Q Consensus 89 ~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~ 168 (898)
.+.++.+|..++.+||.+. -+++++.++..|+|+++.||.++++++|.+. -+..++
T Consensus 10 ~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------------~~~~~~ 65 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG--------------DPEAIP 65 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------------HHHTHH
T ss_pred cCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------------CHHHHH
Confidence 4788999999999999331 2477899999999999999999999999762 244777
Q ss_pred HHHHHHhc-CCHhHHHHHHHHHH
Q 002638 169 PLFEAMME-QNKGVQSGAAMCMA 190 (898)
Q Consensus 169 pL~eaL~e-qnk~VQegAasALA 190 (898)
.|.+.|.+ .+..|+..|+.+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 88888854 57788999999885
No 56
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.76 E-value=0.0017 Score=76.41 Aligned_cols=267 Identities=15% Similarity=0.178 Sum_probs=149.7
Q ss_pred HHHHHHcC--CChhHHHHHHHHHHHHHhcCC---CCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhh
Q 002638 45 ILTSLSKL--ADRDTHQIAIEDLEKTIQTLS---QES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTH 117 (898)
Q Consensus 45 ll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~---pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~Ph 117 (898)
+-++|..| ...+.+..|+...-.++.-|. ... +.-+=..|++++....+.+=-..+.++..|...|. ..+.|-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP 685 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP 685 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence 33445444 346677777766555554332 212 22222233455555445444444444444444444 335555
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHH---HHHHHHH--
Q 002638 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGA---AMCMAKM-- 192 (898)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegA---asALAki-- 192 (898)
+..|+|.|..-|+.....|-.-+...+|.++.....-. +..-|--++=-|++.|...||.+.-.| +.|++++
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi---~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI---GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC---CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 66666666666665555555544444444443331100 012233344444444444444444332 2222222
Q ss_pred ------------------------------HHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCc
Q 002638 193 ------------------------------VECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAP 241 (898)
Q Consensus 193 ------------------------------IE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~ 241 (898)
-|.+. .=.++|-|+.=-..|..-+++..|.++.-++. .|+...
T Consensus 763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC------chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 22211 11356666666667777778888888877764 677777
Q ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 242 QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 242 pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
.|+-.+.|-|.+.|+|.|.--|..|...+..|+...+ ---..-+=-+++.|-.--++..++|..+..|-++.+...-|+
T Consensus 837 dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 837 DYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999887644 111112233455555666777777777777777776665543
No 57
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=0.0019 Score=79.12 Aligned_cols=229 Identities=17% Similarity=0.108 Sum_probs=169.7
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN 153 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik 153 (898)
.+..+++.+....++..+.+|-.-+-.+.. .+... ..+.-+....+|.|...-.|..-.||.+..+.+-.++...
T Consensus 434 ti~~llp~~~~~l~de~~~V~lnli~~ls~-~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~-- 510 (759)
T KOG0211|consen 434 TISELLPLLIGNLKDEDPIVRLNLIDKLSL-LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL-- 510 (759)
T ss_pred CccccChhhhhhcchhhHHHHHhhHHHHHH-HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh--
Confidence 366666766666667777788777754422 23333 3356677788888888888888899999999999999888
Q ss_pred ccccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 002638 154 GKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGS 232 (898)
Q Consensus 154 ~~~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgS 232 (898)
+. .++...+.+|+.. |.+.--.++.||+.+|.++++.-+ ..-+-..++|+++.+..+++|..|-..+.+|..
T Consensus 511 -~~----~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~ 583 (759)
T KOG0211|consen 511 -GV----EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHE 583 (759)
T ss_pred -hh----HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHH
Confidence 21 2233333333322 344456799999999999999765 223577899999999999999999999999999
Q ss_pred HHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638 233 LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 233 LA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
++.+. .-..+.+.++|.+.++..|....+|..|+..|..+...+. +... ..+..+++....|...-||-.|+.|+
T Consensus 584 la~v~-g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 584 LAEVL-GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred HHHHh-ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHhccCcccchhHHHHHHH
Confidence 98654 1234677899999999999999999999999999888777 3333 44555666666688888888888887
Q ss_pred HHHHHhh
Q 002638 312 QLWKKIA 318 (898)
Q Consensus 312 elWK~La 318 (898)
......-
T Consensus 660 ~~i~l~~ 666 (759)
T KOG0211|consen 660 GSIELSR 666 (759)
T ss_pred HHHHHHH
Confidence 7765433
No 58
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.72 E-value=0.0023 Score=70.31 Aligned_cols=182 Identities=20% Similarity=0.318 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhc-CCC
Q 002638 55 RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSD 133 (898)
Q Consensus 55 rDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLk-DpD 133 (898)
-..+..|+..|-.+-. .+.++.+...+ .+.++.+|..++.+||.+-. +.-++.+++.|. |++
T Consensus 57 ~~vr~~aa~~l~~~~~---~~av~~l~~~l----~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~ 119 (335)
T COG1413 57 LLVRLSAAVALGELGS---EEAVPLLRELL----SDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDEN 119 (335)
T ss_pred HHHHHHHHHHHhhhch---HHHHHHHHHHh----cCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCc
Confidence 3455555555333221 22344444444 46678999999997765532 334555666666 899
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHh------------HHHHHHHHHHHHHHhcCCCCc
Q 002638 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKG------------VQSGAAMCMAKMVECASDPPV 201 (898)
Q Consensus 134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~------------VQegAasALAkiIE~a~d~~~ 201 (898)
..||..|.++++.+-..- .+.+|++.+.+.... ++..+..+|..+-+
T Consensus 120 ~~vR~~aa~aL~~~~~~~--------------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~------- 178 (335)
T COG1413 120 EGVRAAAARALGKLGDER--------------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD------- 178 (335)
T ss_pred HhHHHHHHHHHHhcCchh--------------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-------
Confidence 999999999998553322 477888888766532 34444444443332
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hH
Q 002638 202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NL 280 (898)
Q Consensus 202 ~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~ 280 (898)
+..++-+...+.++..-+|.++..+++.+..-. ..+.+.+...+.+++|.+|+.++.+|+.+..... +.
T Consensus 179 ---~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~ 248 (335)
T COG1413 179 ---PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDA 248 (335)
T ss_pred ---hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHH
Confidence 235666777778777777888777777764311 5677788899999999999999999998766555 44
Q ss_pred HHhh
Q 002638 281 VIDG 284 (898)
Q Consensus 281 L~Py 284 (898)
+..+
T Consensus 249 l~~~ 252 (335)
T COG1413 249 LAKA 252 (335)
T ss_pred HHHH
Confidence 4444
No 59
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.67 E-value=0.0049 Score=77.11 Aligned_cols=258 Identities=17% Similarity=0.214 Sum_probs=169.5
Q ss_pred CChhHHHHHHHHHHHHHh---cCCCCCHHHHHHHHhhhc----CC-CChhhHHHHHHHHHHHHHHhchhc----------
Q 002638 53 ADRDTHQIAIEDLEKTIQ---TLSQESLPMLLNCLYESS----ND-PKPAVKKESVRLLALVCELHSELT---------- 114 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~---~L~pe~Lp~fLs~L~es~----~s-~k~~vRKeAIlLLG~IAEg~gd~I---------- 114 (898)
++.+.|..|+..|-++.. .+++..-..|-.+|+..+ .+ ....+|-+.-..|+.+|.....++
T Consensus 474 s~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g 553 (1431)
T KOG1240|consen 474 SEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG 553 (1431)
T ss_pred chHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 345578888877766654 456655445555554432 33 556788776666666665422110
Q ss_pred ---------------hh---hHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 115 ---------------ST---HVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 115 ---------------~P---hLpkIL~-~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
-. .|.+++. .+...|.|+++.||.+-.+.|+.|+.+..+... -..+|.-|+..|.
T Consensus 554 ~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks------ND~iLshLiTfLN 627 (1431)
T KOG1240|consen 554 MLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS------NDVILSHLITFLN 627 (1431)
T ss_pred cccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc------ccchHHHHHHHhc
Confidence 01 2333333 455668999999999999999999999966432 3458888999999
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002638 176 EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL 255 (898)
Q Consensus 176 eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~L 255 (898)
+.++....+=+-.+.-++=..+.. ..=+.|+|-|.+.|.++-..+-..+|.|+..++..|-.-.+++-.++....-+|
T Consensus 628 DkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL 705 (1431)
T KOG1240|consen 628 DKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLL 705 (1431)
T ss_pred CccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhe
Confidence 998888754333333222222221 113357888899999886666667788888888777556788889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc---------hHHHhhHHHHH------HHHHhhhcCCChhhHHHHHHHH-------HH
Q 002638 256 GSTDWATRKAAADALSALALHSS---------NLVIDGATSTL------TVLEACRFDKIKPVRDSMNEAL-------QL 313 (898)
Q Consensus 256 sddDW~vRKaA~EaL~sLA~avg---------e~L~Py~~~~I------~~LE~~RfDKvKpVRD~A~eAL-------el 313 (898)
-.++-=+|.++|..|.+++..++ +.+.||+.+-+ +.|..|..+-+. |.+-...| .|
T Consensus 706 ~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVs--Rsv~~~l~r~~~ens~f 783 (1431)
T KOG1240|consen 706 CHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVS--RSVFNQLLRWSDENSSF 783 (1431)
T ss_pred eCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCc--HHHHHHHHHHhhcchHH
Confidence 99887899999999999998877 25666654432 234566665553 44433333 36
Q ss_pred HHHhhcC
Q 002638 314 WKKIAGK 320 (898)
Q Consensus 314 WK~La~~ 320 (898)
|+.+-..
T Consensus 784 ~k~l~~~ 790 (1431)
T KOG1240|consen 784 WKKLLER 790 (1431)
T ss_pred HHHHHHH
Confidence 6666544
No 60
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.61 E-value=0.0008 Score=69.63 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHH-hchhchhhHHHHHHHH------------HHhhcCCChHHHHHHHHHHHHHHHHHhcc------c
Q 002638 95 VKKESVRLLALVCEL-HSELTSTHVTKIISHI------------VKRLKDSDSGMKEACRDSIGSLSKLYLNG------K 155 (898)
Q Consensus 95 vRKeAIlLLG~IAEg-~gd~I~PhLpkIL~~I------------lrrLkDpDs~VR~Ac~~tLG~LA~~lik~------~ 155 (898)
+|-.|+.+|..+++. -...+-.|++.++|.. .-.++||++.||.+++.++..|-+.. ++ .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS-KPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc-HHHHHHHHh
Confidence 566777777777776 3344666666666644 44588999999999999999987654 21 1
Q ss_pred ccCCc-----------hhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhcCCchh
Q 002638 156 EENNG-----------TVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASD--PPVVAFQKLCARICKLLSNQNFM 221 (898)
Q Consensus 156 ~e~~~-----------~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d--~~~~yL~~LlPRLlkLLks~~~k 221 (898)
..+.. ..+-++=.-|+.+| .|++..+....+-||+.++++.+. ...+++.+++..+.+++.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11111 12333334455555 477888999999999999999854 44578999999999999998888
Q ss_pred hHHHHHHHHHHHHhcc
Q 002638 222 AKASLLPVVGSLSQVG 237 (898)
Q Consensus 222 aK~alL~aIgSLA~vG 237 (898)
++.+++.|++.++.+.
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999997654
No 61
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.52 E-value=0.0027 Score=73.24 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=140.2
Q ss_pred HHHHHHcCC---ChhHHHHHHHHHHHHHhc--CC--CCCHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHHHHhchhchh
Q 002638 45 ILTSLSKLA---DRDTHQIAIEDLEKTIQT--LS--QESLPMLLNCLYESSND-PKPAVKKESVRLLALVCELHSELTST 116 (898)
Q Consensus 45 ll~~L~KLs---DrDT~k~Aa~eLD~Ia~~--L~--pe~Lp~fLs~L~es~~s-~k~~vRKeAIlLLG~IAEg~gd~I~P 116 (898)
+...|.++. --+-++.|+.+|-.+... ++ .+.|.-+|-.+++...+ .+...|+.|+++|+-+++..+..+..
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 444455552 235778899988888862 11 11266777777777755 67888999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638 117 HVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 117 hLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~ 195 (898)
+-+-.+..++..-+|++. .+|.|.-+++..++.+. +. .-+..+.+.|+. +..| .-.++.-++.+++|.
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~---P~----~~I~~i~~~Ilt---~D~~-~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL---PL----QCIVNISPLILT---ADEP-RAVAVIKMLTKLFER 436 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC---ch----hHHHHHhhHHhc---Ccch-HHHHHHHHHHHHHhh
Confidence 998889999999999887 45777777777777777 22 112223322222 2333 333466699999998
Q ss_pred cC-CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcc-ccCcccHHHHHHH
Q 002638 196 AS-DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVG-AIAPQSLEPLLQS 250 (898)
Q Consensus 196 a~-d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vG-a~~~pyld~lLp~ 250 (898)
.. +.+...++.++|.+++..++...-+|..++=|+-++. .+| +.+.||++.+=..
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 64 3445789999999999999998888877777777775 688 7888998876443
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.51 E-value=0.0012 Score=76.04 Aligned_cols=151 Identities=18% Similarity=0.126 Sum_probs=104.1
Q ss_pred HHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002638 119 TKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (898)
Q Consensus 119 pkIL~~IlrrL-kDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~ 197 (898)
+..++.++..| .|+++.|+.+|+.++... + -+..+..|+++|.+.++.|..+++.+|..+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~-----~---------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ-----E---------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc-----C---------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---
Confidence 44577788888 577888887766555311 0 11247888888988888899999888875432
Q ss_pred CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002638 198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (898)
Q Consensus 198 d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av 277 (898)
+...+.|+++|++.+..+|.+++.+++-. +. ...+.|..+|.+.|..+|..|+.+|+.|....
T Consensus 116 -------~~a~~~L~~~L~~~~p~vR~aal~al~~r---~~-------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 116 -------RQAEPWLEPLLAASEPPGRAIGLAALGAH---RH-------DPGPALEAALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred -------hHHHHHHHHHhcCCChHHHHHHHHHHHhh---cc-------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 34678888888888888887766555542 11 12345667778999999999999998876432
Q ss_pred chHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638 278 SNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 278 ge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel 313 (898)
. +..|...+.|.++.||..|+.++-.
T Consensus 179 a----------~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 179 S----------ESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred c----------hHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 1123344778889999988888733
No 63
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.011 Score=72.31 Aligned_cols=221 Identities=18% Similarity=0.133 Sum_probs=162.8
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhH
Q 002638 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (898)
Q Consensus 88 ~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL 167 (898)
..++.++.|-.++.-|.-++|-....-.-+..+|+...+..|+|-|+.|.--|...+..|+..+- ..++
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----------e~il 804 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----------EDIL 804 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----------hhhH
Confidence 34677899999999999999966544555678999999999999999999999999999999981 2356
Q ss_pred HHHHH-HHhcCCH-----hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccc-cC
Q 002638 168 KPLFE-AMMEQNK-----GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGA-IA 240 (898)
Q Consensus 168 ~pL~e-aL~eqnk-----~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa-~~ 240 (898)
+-|.+ ....+++ ....| .|+-++++.-++....|+..|+..+++..++|.-.-|+..+..+|-+-..-+ ..
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 66666 3333322 23344 7888999988888889999999999999999977778877777777643211 11
Q ss_pred cccHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcchHHHhhH----HHH-HHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638 241 PQSLEPLLQSIHECL-GSTDWATRKAAADALSALALHSSNLVIDGA----TST-LTVLEACRFDKIKPVRDSMNEALQLW 314 (898)
Q Consensus 241 ~pyld~lLp~L~e~L-sddDW~vRKaA~EaL~sLA~avge~L~Py~----~~~-I~~LE~~RfDKvKpVRD~A~eALelW 314 (898)
...+-.++..+.... .|+...+|++|+..+..+....|+.+.|+. -+. ...+...|.+...-+|=-+..+++..
T Consensus 883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 224555555555553 467789999999999999999997777754 222 23444566666666776777777777
Q ss_pred HHhhcCC
Q 002638 315 KKIAGKV 321 (898)
Q Consensus 315 K~La~~~ 321 (898)
......+
T Consensus 963 ~a~l~n~ 969 (982)
T KOG4653|consen 963 QAALEND 969 (982)
T ss_pred HHHHHhc
Confidence 7666554
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.44 E-value=0.00064 Score=59.92 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=67.5
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638 122 ISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP 200 (898)
Q Consensus 122 L~~IlrrL-kDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~ 200 (898)
++.+++.| +|+++.||..+++++|.+ + .+.+++.|++.+.+.++.|+..|+.+|..+=
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------G-------DPEAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------T-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------C-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 57788888 999999999999999922 1 3467889999999999999999999999773
Q ss_pred chhHHHHHHHHHHHhcCC-chhhHHHHHHHHH
Q 002638 201 VVAFQKLCARICKLLSNQ-NFMAKASLLPVVG 231 (898)
Q Consensus 201 ~~yL~~LlPRLlkLLks~-~~kaK~alL~aIg 231 (898)
-+..++.|.+++.++ ...+|..++.+||
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245778888888775 4556777777664
No 65
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.39 E-value=0.058 Score=59.36 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHH-hhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHH
Q 002638 60 IAIEDLEKTIQTLSQES-LPMLLNCL-YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMK 137 (898)
Q Consensus 60 ~Aa~eLD~Ia~~L~pe~-Lp~fLs~L-~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR 137 (898)
++...|+.+...+.+.. +..++..| .....+.++.+|+.|+.+||..|-...+.-..|++-++..+.+ | +..|+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~ 81 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK 81 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence 34455666665565533 55666554 4677888999999999999999998888888888777776632 3 88999
Q ss_pred HHHHHHHHHHHHHHhcccccCC-----chhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 138 EACRDSIGSLSKLYLNGKEENN-----GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 138 ~Ac~~tLG~LA~~lik~~~e~~-----~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
-+|..+|.-+.-.+-...++.. ......+++.+...|...++.+|..|+.+|+|+.=.-
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999888877622211111 1224568888888887779999999999999998654
No 66
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0024 Score=71.72 Aligned_cols=227 Identities=19% Similarity=0.182 Sum_probs=146.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhc------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhh-
Q 002638 45 ILTSLSKLADRDTHQIAIEDLEKTIQT------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH- 117 (898)
Q Consensus 45 ll~~L~KLsDrDT~k~Aa~eLD~Ia~~------L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~Ph- 117 (898)
++-.|.+.+|.|.+-.+...|-.|+-. |-. .=|.+++.|.+-+.+..+.++=.|.++|++++.-. ++..|.
T Consensus 212 vLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv 289 (550)
T KOG4224|consen 212 VLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIV 289 (550)
T ss_pred hhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHH
Confidence 445677889999988888877666531 211 11334555555556777889999999999998642 222211
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhc
Q 002638 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a 196 (898)
-.-=+|.+++.|++|--..--+.+.+|..++-+=..++. =.-.-||+||...|. ..|..+|-+|...|-.+--..
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l----I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL----IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc----eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 112256677777777654445555556555544332211 011339999999995 558889999999988777644
Q ss_pred CCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccH-H-HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 002638 197 SDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSL-E-PLLQSIHECLGSTDWATRKAAADALSAL 273 (898)
Q Consensus 197 ~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyl-d-~lLp~L~e~LsddDW~vRKaA~EaL~sL 273 (898)
..-...+.. --+|++..++-+....++.-.-.||..++-.. .+..++ + .++|.|+..+.+.+-.+|..|+++|..+
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 333333333 26788888888776666666666776665322 121122 1 3677888889999999999999999998
Q ss_pred HHhcc
Q 002638 274 ALHSS 278 (898)
Q Consensus 274 A~avg 278 (898)
..-+.
T Consensus 445 ss~v~ 449 (550)
T KOG4224|consen 445 SSDVE 449 (550)
T ss_pred hhhhH
Confidence 87665
No 67
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.013 Score=71.73 Aligned_cols=176 Identities=18% Similarity=0.222 Sum_probs=131.1
Q ss_pred CCCCCHHHHHHHHhhhcC----CCC-hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh-hcCCChHHHHHHHHHHH
Q 002638 72 LSQESLPMLLNCLYESSN----DPK-PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSDSGMKEACRDSIG 145 (898)
Q Consensus 72 L~pe~Lp~fLs~L~es~~----s~k-~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr-LkDpDs~VR~Ac~~tLG 145 (898)
|+...+..+..-|.+... +++ |..=++|+..+-.+++-.++.-.+.+++.+..+..- +.-+.+..-.+|.++||
T Consensus 455 lgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~ig 534 (982)
T KOG2022|consen 455 LGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIG 534 (982)
T ss_pred HhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHH
Confidence 344345555555555443 233 556667999999999999988899999988877654 55568889999999999
Q ss_pred HHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh--hH
Q 002638 146 SLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM--AK 223 (898)
Q Consensus 146 ~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k--aK 223 (898)
.++.|+.++. .+++..++.||++|+.....+| |...|.++||.++....+|.+.++--.-.++...+++ .+
T Consensus 535 s~s~~l~e~P-----~~ln~sl~~L~~~Lh~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 535 SLSNWLGEHP-----MYLNPSLPLLFQGLHNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred HHHHHHhcCC-----cccCchHHHHHHHhcCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHH
Confidence 9999995543 5678889999999974444455 5666999999998888899998887777777655433 46
Q ss_pred HHHHHHHHHHHhc-c-ccCcccHHHHHHHHHHh
Q 002638 224 ASLLPVVGSLSQV-G-AIAPQSLEPLLQSIHEC 254 (898)
Q Consensus 224 ~alL~aIgSLA~v-G-a~~~pyld~lLp~L~e~ 254 (898)
..++.+||-+.+. . +..+.|+..++.++++-
T Consensus 608 ~klm~sIGyvls~~~pEe~~kyl~~lin~il~q 640 (982)
T KOG2022|consen 608 LKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQ 640 (982)
T ss_pred HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHH
Confidence 6889999998653 2 45677888888877654
No 68
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.34 E-value=0.0013 Score=80.25 Aligned_cols=157 Identities=16% Similarity=0.156 Sum_probs=128.1
Q ss_pred HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccC
Q 002638 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP-PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIA 240 (898)
Q Consensus 163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~-~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~ 240 (898)
+..++|.|.+......-.+.--=..+|+.++-+.|.+ +.+.++.|+|-|++.|.-++.-+|...+.+|..+.. .+...
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 5556666666664222222222456788888776543 357899999999999999999999999999988864 44677
Q ss_pred cccHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002638 241 PQSLEPLLQSIHECLGSTD---WATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKK 316 (898)
Q Consensus 241 ~pyld~lLp~L~e~LsddD---W~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~ 316 (898)
..|++.++|.++..-.+.| ..+|..|++||++|...+| ..+.||.+.+|.+|.-+.-||-+-||.-|..+=+-|-.
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 8999999999999877755 7899999999999999999 88999999999999999999999999999999999988
Q ss_pred hhc
Q 002638 317 IAG 319 (898)
Q Consensus 317 La~ 319 (898)
+..
T Consensus 1025 l~s 1027 (1030)
T KOG1967|consen 1025 LGS 1027 (1030)
T ss_pred ccc
Confidence 763
No 69
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.02 Score=67.45 Aligned_cols=227 Identities=20% Similarity=0.244 Sum_probs=134.8
Q ss_pred CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---hhHHHH---------------------------
Q 002638 72 LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKI--------------------------- 121 (898)
Q Consensus 72 L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---PhLpkI--------------------------- 121 (898)
+.++.+.+.++.|...+.+.....|-+|++.|..+|-.+++.+. +-++.+
T Consensus 296 v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idr 375 (898)
T COG5240 296 VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDR 375 (898)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHH
Confidence 46667888888888888889999999999999999988776542 223322
Q ss_pred -HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCC
Q 002638 122 -ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDP 199 (898)
Q Consensus 122 -L~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~ 199 (898)
+..|..-+.|-.-...-++.+++..|+-..- ..|..+|.-|...|. +-.-.-...+.-|+..+++..++.
T Consensus 376 Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp--------~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s 447 (898)
T COG5240 376 LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFP--------SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS 447 (898)
T ss_pred HHHHHHHHHHhhccCceEEeHHHHHHHHhhCc--------HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH
Confidence 2222222222222222233333443333331 225556666666652 223334445666666666655443
Q ss_pred CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002638 200 PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN 279 (898)
Q Consensus 200 ~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge 279 (898)
-.-.|..|| ..+.+--| -..++..++-+-.-|.-. +.-..++..+.+.+.-++--+|.+|..||...|....+
T Consensus 448 kEraLe~LC----~fIEDcey--~~I~vrIL~iLG~EgP~a-~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d 520 (898)
T COG5240 448 KERALEVLC----TFIEDCEY--HQITVRILGILGREGPRA-KTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD 520 (898)
T ss_pred HHHHHHHHH----HHHhhcch--hHHHHHHHHHhcccCCCC-CCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc
Confidence 222343443 33332222 224444444443223111 11124555566666667788999999999999998887
Q ss_pred HHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002638 280 LVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (898)
Q Consensus 280 ~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK 315 (898)
.+.| .++..+|..|..|+++.|||-|.-++++..
T Consensus 521 ~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 521 VVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 6553 466778999999999999998766666654
No 70
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.33 E-value=0.087 Score=57.55 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=155.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQE-----SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK 127 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe-----~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilr 127 (898)
.|..+|.-|+..|-.+...++++ ++..++.++.+...+ +..=..++..|-.+++ +.........+|+..|.+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVK-MKNFSPESAVKILRSLFQ 87 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHH
Confidence 56778889999999999888743 377788888877743 3333444777777773 334445567777777777
Q ss_pred hhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhH
Q 002638 128 RLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAF 204 (898)
Q Consensus 128 rLkDp--Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL 204 (898)
...-+ -..+|..+-..+-.|........ ...-..|+..+++++ +|.+|+--.-++.-+..++..-+- .++.
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l----~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~ 161 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENHREAL----QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFA 161 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHhHHHH----HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhH
Confidence 55443 35789999998888887763221 133467888889988 789999888888888888775431 2333
Q ss_pred HHHHHHHHHHh----cC---Cchh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 205 QKLCARICKLL----SN---QNFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 205 ~~LlPRLlkLL----ks---~~~k-aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
+.|..-+.-.+ +. ..++ .+..+-.++..... ..+.|.+..+|.|++.|.++...++.-++++|..-...
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~---s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS---STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc---CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 33322222221 11 1222 22233333333221 23456678999999999999999999999999999999
Q ss_pred cc-hHHHhhHHHHHHHHH
Q 002638 277 SS-NLVIDGATSTLTVLE 293 (898)
Q Consensus 277 vg-e~L~Py~~~~I~~LE 293 (898)
.| +.+.||...+-..|.
T Consensus 239 y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNALK 256 (262)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 99 889999999988775
No 71
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.29 E-value=0.0096 Score=73.16 Aligned_cols=178 Identities=15% Similarity=0.235 Sum_probs=128.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCC
Q 002638 120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDP 199 (898)
Q Consensus 120 kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~ 199 (898)
.+.+.....-+|-.+.||.+++.-+|.++..+.++ .....+++-+.+.+.+....|+++|..++..+.+.....
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~------~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~ 310 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESE------IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD 310 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHH------HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence 44555555567788999999999999999999542 334445555555557777889999999999999876554
Q ss_pred CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 200 PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 200 ~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
. +..+.+++.+++..++++-.++.+....-..+. .+|. ...-....++....+++..|..|.+++.-...++....
T Consensus 311 ~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 311 D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 3 667789999999999998887776555444443 3442 22333566777788999999999888777777666665
Q ss_pred -hHHH-hhHHHHHHHHHhhhcCCChhhHHH
Q 002638 279 -NLVI-DGATSTLTVLEACRFDKIKPVRDS 306 (898)
Q Consensus 279 -e~L~-Py~~~~I~~LE~~RfDKvKpVRD~ 306 (898)
+.+. -....++.+++.+-.|....||.+
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a 417 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNALHVRSA 417 (759)
T ss_pred cccccccchhhhhHHHHHHHhcccchHHHH
Confidence 2111 123555688889999999999975
No 72
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.27 E-value=0.0018 Score=79.12 Aligned_cols=213 Identities=13% Similarity=0.153 Sum_probs=155.4
Q ss_pred CChhHHHHHHHHHHHHHhcC----CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh------c-------h
Q 002638 53 ADRDTHQIAIEDLEKTIQTL----SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL------T-------S 115 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L----~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~------I-------~ 115 (898)
+..|-+.+|.+-|-=+...| .|+..+. -..|.+..++ +.+-..+..+|..+..-+... . .
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~i-a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEI-AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchH-HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 44555666666655444432 2333322 2223333333 333455666666655433211 1 1
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~ 195 (898)
-+...|+|.+++.+.-.+..++.-...++..+..++-++ -....++.++|-|+++|+=.+..||..+-.||..++..
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~---vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ---VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH---hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 257788999999998666777877777777766666332 23355889999999999999999999999999999998
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCch---hhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638 196 ASDPPVVAFQKLCARICKLLSNQNF---MAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (898)
Q Consensus 196 a~d~~~~yL~~LlPRLlkLLks~~~---kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL 270 (898)
.+.+...+++.++|.++.+=.++++ -+|..+|.|++++..+- ....+|-+.++..|..+|.|.-.-+|+.|+++=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 8888889999999999999888764 47889999999998633 567899999999999999999999999999984
Q ss_pred H
Q 002638 271 S 271 (898)
Q Consensus 271 ~ 271 (898)
.
T Consensus 1020 ~ 1020 (1030)
T KOG1967|consen 1020 Q 1020 (1030)
T ss_pred h
Confidence 3
No 73
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.27 E-value=0.033 Score=62.05 Aligned_cols=200 Identities=20% Similarity=0.177 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH-HHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSK-LYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~-~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
+..-+.-.+..|.|.....|.++...|-.+.. ++.. +........++..+...+.-....-|.-|+.+++-++=..
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~---d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLP---DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 44445566777888889999999998766653 3321 1122445667777777774333355666766666665432
Q ss_pred --CCCCchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCcccHH---HHHHHHH--HhhCC----------
Q 002638 197 --SDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVGAIAPQSLE---PLLQSIH--ECLGS---------- 257 (898)
Q Consensus 197 --~d~~~~yL~~LlPRLlkLLks~--~~kaK~alL~aIgSLA~vGa~~~pyld---~lLp~L~--e~Lsd---------- 257 (898)
......++..+.|.|.+++.+. +.++|.+++.|++-+.-++..-..-+. ..|..++ .++..
T Consensus 118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 3444578899999999999875 457788888888887544422223344 3333222 22222
Q ss_pred CCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 258 TDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 258 dDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
++..+..+|+++.+.|+..++ ..+..+....+..|-.+.--.+..||-+|=++|-+.=++...
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 346799999999999999999 457777788888777666666777999999999998777764
No 74
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.22 E-value=0.03 Score=68.83 Aligned_cols=239 Identities=18% Similarity=0.152 Sum_probs=157.6
Q ss_pred HHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---
Q 002638 41 MKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS--- 115 (898)
Q Consensus 41 LK~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~--- 115 (898)
+|+.++.+|..+ +|..++.+|-..|.++-. ++.|-..|.-+.-.. ...-+.|+.|+..|....+.|+-...
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~---~~~f~~aL~~va~~~-~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLEL---TEGFGVALAEVAANK-DASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhcccc---chHHHHHHHHHHhCc-ccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 578899999877 688888888877775543 334555555544322 23466899999999999999884321
Q ss_pred --h------hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH
Q 002638 116 --T------HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM 187 (898)
Q Consensus 116 --P------hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas 187 (898)
| --..|...++..|-|+...+|.++..++..++.+-.- +.|+++++-++++|...|.+.--||..
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P-------d~WpElv~~i~~~l~~~n~n~i~~am~ 150 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP-------DEWPELVPFILKLLSSGNENSIHGAMR 150 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc-------hhhHHHHHHHHHHHhccchhhhhhHHH
Confidence 1 1234555667777799999999999999999998732 449999999999998888888899999
Q ss_pred HHHHHHHhcC-CCCchhHHHH---HHHHHHHhcCCchh--hHHHHHHHHHHH---Hh-cc----ccCcccHHHHHHHHHH
Q 002638 188 CMAKMVECAS-DPPVVAFQKL---CARICKLLSNQNFM--AKASLLPVVGSL---SQ-VG----AIAPQSLEPLLQSIHE 253 (898)
Q Consensus 188 ALAkiIE~a~-d~~~~yL~~L---lPRLlkLLks~~~k--aK~alL~aIgSL---A~-vG----a~~~pyld~lLp~L~e 253 (898)
||+.+..+.. ..+....+.. +-+++++....+.. .+.+.+....++ +. .+ +....++..+|+...+
T Consensus 151 vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 151 VLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997642 1111111222 23444444544433 333322222222 21 22 1223344444444444
Q ss_pred hhCC-------CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002638 254 CLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (898)
Q Consensus 254 ~Lsd-------dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~ 290 (898)
.+.. .+|.+|...+-++..+....+..+.||+.....
T Consensus 231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~ 274 (1005)
T KOG2274|consen 231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFS 274 (1005)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhh
Confidence 3322 689999999999999999999888888765544
No 75
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.012 Score=71.30 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002638 80 LLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159 (898)
Q Consensus 80 fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~ 159 (898)
+..+|..-+++.+-.+ ..++|-+++..|..-+. +-+.|-|.+.|+.+++.||.=|.-+..++.+...
T Consensus 108 ltNslknDL~s~nq~v---VglAL~alg~i~s~Ema---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P------- 174 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYV---VGLALCALGNICSPEMA---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP------- 174 (866)
T ss_pred HHHHHHhhccCCCeee---hHHHHHHhhccCCHHHh---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-------
Confidence 3444444344444433 44444444444544443 4557888888999999999988888877776661
Q ss_pred chhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638 160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 160 ~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~ 195 (898)
+....|+++.-..|.+.+..|-.++.--+..+|+.
T Consensus 175 -~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 175 -DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred -hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 44667778888888887777776554444555544
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.18 E-value=0.11 Score=59.92 Aligned_cols=248 Identities=15% Similarity=0.164 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC----------CCC---hhhHHHHHHHHHHHHHHhchhchhhHHHHH
Q 002638 56 DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN----------DPK---PAVKKESVRLLALVCELHSELTSTHVTKII 122 (898)
Q Consensus 56 DT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~----------s~k---~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL 122 (898)
..-..+..-+..++..++++.=..++..+....- ... +..+.-.++..+.++....+-..|.+..++
T Consensus 112 ~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll 191 (415)
T PF12460_consen 112 RVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELL 191 (415)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHH
Confidence 3445666667777777775543333333322110 111 234455556666777767777777888888
Q ss_pred HHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhc--CC
Q 002638 123 SHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECA--SD 198 (898)
Q Consensus 123 ~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a--~d 198 (898)
..++..... .++.+|.+++..++.|+-.+.+. +.+..++..++..+ ....+.....+...+.-+.-+. +.
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDD------DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 888887555 45899999999999998886322 34677777777777 3334444444444444444432 21
Q ss_pred CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc---------cc-----cCcccHHHHHHHHHHhhCCCCHHHHH
Q 002638 199 PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV---------GA-----IAPQSLEPLLQSIHECLGSTDWATRK 264 (898)
Q Consensus 199 ~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~v---------Ga-----~~~pyld~lLp~L~e~LsddDW~vRK 264 (898)
. +....++.+|+.+|.++... ..+-.+++-+..- ++ .-+-+|..++|.|.+.....+-..|-
T Consensus 266 ~--~~~~~~~~~L~~lL~~~~~g--~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~ 341 (415)
T PF12460_consen 266 H--PLATELLDKLLELLSSPELG--QQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKS 341 (415)
T ss_pred C--chHHHHHHHHHHHhCChhhH--HHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHH
Confidence 1 34567888899999985443 3334444444311 11 12678889999999998887666888
Q ss_pred HHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638 265 AAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 265 aA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel 313 (898)
.-.-+|..|...+| +.+.++++.++..+..+---.+..||.++++.|..
T Consensus 342 ~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 342 NYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 88999999999999 89999999999977655544455578875555544
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0061 Score=68.61 Aligned_cols=253 Identities=13% Similarity=0.083 Sum_probs=165.1
Q ss_pred HHHcCCChhHHHHHHHHHHHHHhcCC-------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH--hchhchhhH
Q 002638 48 SLSKLADRDTHQIAIEDLEKTIQTLS-------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL--HSELTSTHV 118 (898)
Q Consensus 48 ~L~KLsDrDT~k~Aa~eLD~Ia~~L~-------pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg--~gd~I~PhL 118 (898)
-|+|..|--.++.|+..|-.+...-. ...++.+++.+. +.++.+|..|-.++++|+-. +-+.+..-=
T Consensus 174 rLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~----s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 174 RLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK----SGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred hhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc----cCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 36777666699999998887765432 223555555444 56788999999999998743 445577778
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH--hcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh-
Q 002638 119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY--LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC- 195 (898)
Q Consensus 119 pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l--ik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~- 195 (898)
|+++|.++....|+++.|.-.+..+++.|+... ..+.. -.--+|.|++.|.++.-..-.+...|+-.+-=.
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv------~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV------EAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH------hcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 899999999999999999999999999998754 11211 111355666677655444445555666433211
Q ss_pred -cCCCC--chhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcc-ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638 196 -ASDPP--VVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVG-AIA-PQSLEPLLQSIHECLGSTDWATRKAAADA 269 (898)
Q Consensus 196 -a~d~~--~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vG-a~~-~pyld~lLp~L~e~LsddDW~vRKaA~Ea 269 (898)
..-++ ..||.+| ..+|.-. +..+|.++.+.+.-+|+.. ... ...-...+|.|.+.+-|..-.+|..-.-|
T Consensus 324 lNe~lI~dagfl~pL----VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac 399 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPL----VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC 399 (550)
T ss_pred CcccceecccchhHH----HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence 11111 2455554 4455543 4557778888888876422 111 11112457788888888777777766667
Q ss_pred HHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638 270 LSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLW 314 (898)
Q Consensus 270 L~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelW 314 (898)
|..++..--++..-.-..++++|-...++...+||+-+.+||.-+
T Consensus 400 ~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 400 IAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred HHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 777776655433322356788888899999999999877776543
No 78
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.14 E-value=0.014 Score=63.45 Aligned_cols=192 Identities=16% Similarity=0.155 Sum_probs=131.8
Q ss_pred CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002638 72 LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKL 150 (898)
Q Consensus 72 L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~ 150 (898)
++++.|..++.+|. .+.+|..++.+..++++.+..-. ..+.-. --.++.|...|.+|++.||.-+.+++..++..
T Consensus 9 l~~~~l~~Ll~lL~---~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 9 LEAQELQKLLCLLE---STEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred cCHHHHHHHHHHHh---cCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 56667877777776 24579999999999999765322 122211 24578899999999999999999999988776
Q ss_pred HhcccccCCchhHHhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 002638 151 YLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLP 228 (898)
Q Consensus 151 lik~~~e~~~~~~~~lL~pL~eaL~e--qnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~ 228 (898)
.- ....+..++..+.+.+.. -|-.+|.++..+|..+.= .+.....+...+|.|+.+|...+.++|..+|.
T Consensus 85 ~e------n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 85 DE------NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hh------hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHhhHHHHHHHHHcCChHHHHHHHH
Confidence 61 124466677777777633 378999998888888742 22222446677889999999999999999899
Q ss_pred HHHHHHhcc----ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002638 229 VVGSLSQVG----AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS 278 (898)
Q Consensus 229 aIgSLA~vG----a~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg 278 (898)
++.-++.-. ..+.. ..+..+...+.. .+.++...++..+..|-..+.
T Consensus 157 ~L~nLS~np~~~~~Ll~~---q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLSA---QVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHHHhccCHHHHHHHHhc---cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 888876311 22211 223344444444 356667777777777766665
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.10 E-value=0.057 Score=62.50 Aligned_cols=24 Identities=13% Similarity=0.386 Sum_probs=11.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHH
Q 002638 122 ISHIVKRLKDSDSGMKEACRDSIG 145 (898)
Q Consensus 122 L~~IlrrLkDpDs~VR~Ac~~tLG 145 (898)
+..++..|.|+++.||.++..++|
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg 111 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALG 111 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHh
Confidence 334444444444444444444444
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.09 E-value=0.022 Score=72.96 Aligned_cols=150 Identities=16% Similarity=0.295 Sum_probs=115.6
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC
Q 002638 54 DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133 (898)
Q Consensus 54 DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD 133 (898)
|+++.+.++.-|-.... |. ..|..||..|.-....+...+|--|+++|..+++.-+.-+. .+.|...|..++.|+.
T Consensus 793 d~~~a~li~~~la~~r~-f~-~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Dss 868 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARS-FS-QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSS 868 (1692)
T ss_pred cchhHHHHHHHHHhhhH-HH-HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccch
Confidence 44555555544443222 21 24899999999888888999999999999999996554433 4788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 002638 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK 213 (898)
Q Consensus 134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlk 213 (898)
..||+|+++.+|+++-.. .+....|...+.+.+.+..-.|---+.--|..+|+..++. .....+|-|++.
T Consensus 869 asVREAaldLvGrfvl~~--------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlr 938 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSI--------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKMLR 938 (1692)
T ss_pred hHHHHHHHHHHhhhhhcc--------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHH
Confidence 999999999999988776 2557788889999999999999999999999999976654 334555555555
Q ss_pred HhcC
Q 002638 214 LLSN 217 (898)
Q Consensus 214 LLks 217 (898)
-.++
T Consensus 939 Rv~D 942 (1692)
T KOG1020|consen 939 RVND 942 (1692)
T ss_pred Hhcc
Confidence 5544
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.96 E-value=0.0013 Score=54.12 Aligned_cols=53 Identities=30% Similarity=0.137 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002638 260 WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQ 312 (898)
Q Consensus 260 W~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALe 312 (898)
|.+|.+|+.+|+.++...++.+.||...++..|..+..|....||..|..||.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999888775
No 82
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.19 Score=63.21 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=115.0
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC-HhHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN-KGVQSGAAMCMAKM 192 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn-k~VQegAasALAki 192 (898)
+..+++.++-+++..|+|.|..||..++..+|++...+. . .....++...++.+...+ ..+=-|||.+||.+
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAEL 407 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---P----ELADQVIGSVIDLFNPAEDDSAWHGACLALAEL 407 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---H----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHH
Confidence 557899999999999999999999999999999999992 2 456667777777664333 44556999999998
Q ss_pred HHhcCCCCchhHHHHHHHHHHHhcCC--------chhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHH-HhhCCCCHH
Q 002638 193 VECASDPPVVAFQKLCARICKLLSNQ--------NFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIH-ECLGSTDWA 261 (898)
Q Consensus 193 IE~a~d~~~~yL~~LlPRLlkLLks~--------~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~-e~LsddDW~ 261 (898)
--. +-.+...+..++|-+++.|.=. .-++|-++.=++=+++.+- ..+.|++..+.+.|+ ..+-|.+-.
T Consensus 408 A~r-GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevn 486 (1133)
T KOG1943|consen 408 ALR-GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVN 486 (1133)
T ss_pred Hhc-CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhh
Confidence 752 2333346788888888877422 2235555555566666533 345678888888765 568899999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 002638 262 TRKAAADALSALALHSS 278 (898)
Q Consensus 262 vRKaA~EaL~sLA~avg 278 (898)
.|.+|.-+|-......|
T Consensus 487 cRRAAsAAlqE~VGR~~ 503 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQG 503 (1133)
T ss_pred HhHHHHHHHHHHhccCC
Confidence 99999988876655543
No 83
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.099 Score=63.88 Aligned_cols=228 Identities=15% Similarity=0.133 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V 136 (898)
..-.|+-.|-.|. ++|..+-+++-+.+-+++.++.+||-|+++.--+.+.-++.+ +.+++...+.|+|.+..|
T Consensus 123 vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGV 195 (866)
T KOG1062|consen 123 VVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGV 195 (866)
T ss_pred ehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCce
Confidence 3345555555444 677888889999888889999999999999877777665554 344566677788888766
Q ss_pred HHHHHHHHHHHHHH---------------------Hhcc----cccC---CchhHHhhHHHHHHHHhcCCHhHHHHHHHH
Q 002638 137 KEACRDSIGSLSKL---------------------YLNG----KEEN---NGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (898)
Q Consensus 137 R~Ac~~tLG~LA~~---------------------lik~----~~e~---~~~~~~~lL~pL~eaL~eqnk~VQegAasA 188 (898)
--+....+..++.. ++.. +.+. .+.+++.-+-.|+..|+..++..-+..+.-
T Consensus 196 L~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~Di 275 (866)
T KOG1062|consen 196 LIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDI 275 (866)
T ss_pred eeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 55555444444433 1110 0000 001222222234444555666666666666
Q ss_pred HHHHHHhcC---CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC----------------cccHHHHHH
Q 002638 189 MAKMVECAS---DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA----------------PQSLEPLLQ 249 (898)
Q Consensus 189 LAkiIE~a~---d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~----------------~pyld~lLp 249 (898)
|+.++...+ +.--.+|=.-+..++-+.. +...|..++.+||-|..-.... +..+..=-.
T Consensus 276 LaqvatntdsskN~GnAILYE~V~TI~~I~~--~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~ 353 (866)
T KOG1062|consen 276 LAQVATNTDSSKNAGNAILYECVRTIMDIRS--NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRS 353 (866)
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHhccC--CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHH
Confidence 666665431 1111122222222222222 2233445555555553211111 111222223
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhh
Q 002638 250 SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEAC 295 (898)
Q Consensus 250 ~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~ 295 (898)
.+++||.|.|-.+|+.|+|.+..|.-. ..+...+.+.|.+|+.+
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELLEFLESS 397 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhc
Confidence 578999999999999999999977653 55666778888888877
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.019 Score=68.54 Aligned_cols=219 Identities=18% Similarity=0.199 Sum_probs=138.8
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHH-HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc--ccc
Q 002638 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK-IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG--KEE 157 (898)
Q Consensus 81 Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpk-IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~--~~e 157 (898)
..+|.....++++.||.+|+..|=++.+|.. |++ +....++.|+|.+..||.+|...+-.++..+.-+ ...
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccc------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3335545567788899998888877777432 222 3556788899999999999999888888777322 111
Q ss_pred CCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHH--------------------------
Q 002638 158 NNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCAR-------------------------- 210 (898)
Q Consensus 158 ~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPR-------------------------- 210 (898)
.........+..+.+++.+-.-.|..-|+-+|..|..-....+...|+ +++-+
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 223556777778888886654444333555555444433222222333 23331
Q ss_pred ------------------------HHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHH
Q 002638 211 ------------------------ICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAA 266 (898)
Q Consensus 211 ------------------------LlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA 266 (898)
|+.-|.+.-+.+|.+++..+++++. ..+.+....+-.|.+.+.|+.-.+|.-|
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---ssP~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---SSPGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 1111222234466777777777764 4466777888888999999999999999
Q ss_pred HHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638 267 ADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 267 ~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel 313 (898)
+-+|..|+..+- .=..+++.+++.|+ |....||+.+.+.|..
T Consensus 431 i~aL~~Is~~l~-i~eeql~~il~~L~----D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 431 IFALTMISVHLA-IREEQLRQILESLE----DRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHhe-ecHHHHHHHHHHHH----hcCHHHHHHHHHHHHh
Confidence 999999988843 11123444444444 8778788876655543
No 85
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.88 E-value=0.046 Score=63.69 Aligned_cols=215 Identities=15% Similarity=0.168 Sum_probs=121.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHH----HHHHHHhhcCC-ChHHHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKI----ISHIVKRLKDS-DSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkI----L~~IlrrLkDp-Ds~VR~Ac~~tLG~LA~~l 151 (898)
+..+|..|+..+..+....-+..++++-.+.-...+.+.|+...| +..+..-.+.| +|..-+-+-++||.+.+..
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 344444444333222222233344444444444555555554444 44444445555 5899999999999999997
Q ss_pred hcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHH-HhcCCchhhHHHHHHH
Q 002638 152 LNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS-DPPVVAFQKLCARICK-LLSNQNFMAKASLLPV 229 (898)
Q Consensus 152 ik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~-d~~~~yL~~LlPRLlk-LLks~~~kaK~alL~a 229 (898)
.+...+.....-..+++++...|.+.-....--++.=|+-++|..+ ..+.+....|+|.|+. .+=...- -=+++..+
T Consensus 104 ~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g-niPalvrL 182 (435)
T PF03378_consen 104 CEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG-NIPALVRL 182 (435)
T ss_dssp -GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT-THHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC-CcCcHHHH
Confidence 5432211223344455555555554445555667778889999865 3333333344444432 1111111 11477888
Q ss_pred HHHHHhcc-ccC--cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHh
Q 002638 230 VGSLSQVG-AIA--PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEA 294 (898)
Q Consensus 230 IgSLA~vG-a~~--~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~ 294 (898)
+.+++..+ ..+ ..++..++...+.++.+...+ -.+.+.|.+|...++ +.+.||+..++.+|-.
T Consensus 183 L~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 183 LQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLT 249 (435)
T ss_dssp HHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred HHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 88887654 322 478888888888888875322 357899999999999 7899999999987753
No 86
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.85 E-value=0.015 Score=65.20 Aligned_cols=259 Identities=15% Similarity=0.133 Sum_probs=160.3
Q ss_pred CChhHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQT--------LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIIS 123 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~--------L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~ 123 (898)
+..|.+.+|+=.|-.|+.. |....|.++|..|.++..+ -...| -+--.|.++|+|-..- --..+.+.+|
T Consensus 169 ~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~-ismlR-n~TWtLSNlcRGknP~P~w~~isqalp 246 (526)
T COG5064 169 TEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH-ISMLR-NATWTLSNLCRGKNPPPDWSNISQALP 246 (526)
T ss_pred chHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch-HHHHH-HhHHHHHHhhCCCCCCCchHHHHHHHH
Confidence 3456777777777766642 1233477888888743211 12333 4555677888875432 2346788899
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH-hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV 202 (898)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~-~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~ 202 (898)
.+.+.+---|+.|-.-|||+|.-|+.---. ..+.++. -+.+.|+++|...+..+|.-|.-....++-+.+++..-
T Consensus 247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E----~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv 322 (526)
T COG5064 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNE----KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV 322 (526)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhccCcHH----HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh
Confidence 999999888998988999999866533211 1111111 13467999998888899998998888888765544332
Q ss_pred hHH-HHHHHHHHHhcCCchhhH-HHHHHHHHHHHhcc--ccCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002638 203 AFQ-KLCARICKLLSNQNFMAK-ASLLPVVGSLSQVG--AIAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHS 277 (898)
Q Consensus 203 yL~-~LlPRLlkLLks~~~kaK-~alL~aIgSLA~vG--a~~~pyld-~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av 277 (898)
+++ -.++-|-.+|.++.-.+| +++-. |+-+ .+| ......++ .++|+|...|+.-+..+||.||=++......-
T Consensus 323 iI~~G~L~a~~~lLs~~ke~irKEaCWT-iSNI-TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg 400 (526)
T COG5064 323 IINCGALKAFRSLLSSPKENIRKEACWT-ISNI-TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400 (526)
T ss_pred heecccHHHHHHHhcChhhhhhhhhhee-eccc-ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 222 134455566888866554 44432 2222 223 22333333 47889999999999999999999988765432
Q ss_pred c---hHHHhhH--HHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 278 S---NLVIDGA--TSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 278 g---e~L~Py~--~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
- +.+. |+ ..||+.|....--.+-.+-++++.+++-...+...
T Consensus 401 ~~~PD~ir-yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~ 447 (526)
T COG5064 401 LNRPDIIR-YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ 447 (526)
T ss_pred cCCchHHH-HHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH
Confidence 2 4433 53 55677665332222222448877777776665544
No 87
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.81 E-value=0.043 Score=68.11 Aligned_cols=193 Identities=12% Similarity=0.034 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHh
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~ 195 (898)
-+++|-+.+...+-|++-.=|..+.+.+......--.. .......++..++... .+.|..|-.-|+.||..+.-.
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----IVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 47888899999999999999998888777666555211 1122334455555555 577888888899999999999
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002638 196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (898)
Q Consensus 196 a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~ 275 (898)
.+....+|...+.|.|+..|+...-.++.+++.|+.++.. ...+..+++.+.+++.+.+.+.|......|.....
T Consensus 326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN-----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 9888888999999999999999888888888888888754 34577888999999999999999998888888777
Q ss_pred hcch--HHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638 276 HSSN--LVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 276 avge--~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La 318 (898)
-.+. ....-...++..+-..-.|+.++||.++.+++-....+-
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 7773 233346777888888888999999999999987665443
No 88
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.76 E-value=0.0017 Score=48.17 Aligned_cols=31 Identities=13% Similarity=0.453 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
|+|.+++.|+|+++.||.+|+.++|.|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999998763
No 89
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.74 E-value=0.028 Score=57.34 Aligned_cols=115 Identities=15% Similarity=0.186 Sum_probs=93.3
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCC
Q 002638 178 NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS 257 (898)
Q Consensus 178 nk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsd 257 (898)
++.+...+..||.-+|-.-+ ..+++.+|.+...|++++..+|..++-++.-++..+ +...-..++..+..++.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik~k~~l~~~~l~~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED--MIKVKGQLFSRILKLLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--ceeehhhhhHHHHHHHcC
Confidence 45677778888888876443 457788899999999999999999999999997633 333334556667788899
Q ss_pred CCHHHHHHHHHHHHHHHHh-cchHHHhhHHHHHHHHHhhhcC
Q 002638 258 TDWATRKAAADALSALALH-SSNLVIDGATSTLTVLEACRFD 298 (898)
Q Consensus 258 dDW~vRKaA~EaL~sLA~a-vge~L~Py~~~~I~~LE~~RfD 298 (898)
+|..+|..|..+|..++.. .+..|..++.++|-.|..+..+
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~ 116 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEH 116 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccc
Confidence 9999999999999999999 5688999999999999877543
No 90
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.73 E-value=0.017 Score=60.07 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHh
Q 002638 204 FQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSAL---ALH 276 (898)
Q Consensus 204 L~~LlPRLlkLLks~~----~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sL---A~a 276 (898)
++.++|-++.-|.... |-++....+.+-. ..+.-..|.+..++++|...|...|..+..+++++|..| ...
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4567788887776543 3344444444443 223567889999999999999999999999999999999 888
Q ss_pred cchHHHhhHHHHHHHHH---hhh--------cCCChhhHHHHHHHHHHHHHhhcC
Q 002638 277 SSNLVIDGATSTLTVLE---ACR--------FDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 277 vge~L~Py~~~~I~~LE---~~R--------fDKvKpVRD~A~eALelWK~La~~ 320 (898)
+|+.|.||..+++.++. +++ +.+.+.++|.+.++|+..-.-+|.
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 99999999999988776 333 245577899999999998877765
No 91
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.4 Score=58.86 Aligned_cols=220 Identities=16% Similarity=0.184 Sum_probs=138.8
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHH
Q 002638 47 TSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV 126 (898)
Q Consensus 47 ~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Il 126 (898)
.|.+..++. .|+.|+..|-++-. |++++-..++.+|..-+.+..+.|=-.|+++|..+|--+-+.|-+|..++.
T Consensus 150 ~~~~D~s~y-VRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC---- 223 (968)
T KOG1060|consen 150 KAVTDPSPY-VRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLC---- 223 (968)
T ss_pred HHhcCCcHH-HHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHH----
Confidence 344444433 88888888887764 678777788888877777888889999999998888777777777776654
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHhccc-c------c------------------CCchhHHhhHHHHHHHHhcCCHhH
Q 002638 127 KRLKDSDSGMKEACRDSIGSLSKLYLNGK-E------E------------------NNGTVVGLFVKPLFEAMMEQNKGV 181 (898)
Q Consensus 127 rrLkDpDs~VR~Ac~~tLG~LA~~lik~~-~------e------------------~~~~~~~~lL~pL~eaL~eqnk~V 181 (898)
+.|.|-|.==+-....+|.++|++.+-.+ . + ....-+..+|..+=-+|...|+.|
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV 303 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV 303 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence 45555554444456677888888775321 0 0 001224445544444445678887
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHH--------------
Q 002638 182 QSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEP-------------- 246 (898)
Q Consensus 182 QegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~-------------- 246 (898)
-.++|.++--+- +. .-...++.-|+.+|.++ ..+|..+|.+|..++-.. ..|.||++.
T Consensus 304 VmA~aql~y~lA---P~---~~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~l 376 (968)
T KOG1060|consen 304 VMAVAQLFYHLA---PK---NQVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKIL 376 (968)
T ss_pred HHHHHhHHHhhC---CH---HHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHH
Confidence 777776654332 11 12334555556666653 234566777777765322 455555543
Q ss_pred ----------------HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002638 247 ----------------LLQSIHECLGSTDWATRKAAADALSALALHSSN 279 (898)
Q Consensus 247 ----------------lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge 279 (898)
+++-++.+..+.|..+=.+|+++||.-|...+.
T Consensus 377 KleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s 425 (968)
T KOG1060|consen 377 KLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS 425 (968)
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence 333444556677777888888999988888875
No 92
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.45 Score=58.14 Aligned_cols=169 Identities=12% Similarity=0.120 Sum_probs=115.0
Q ss_pred CCHHHHHHHHhhhc-------CC-CChhhHHHHHHHHHHHHHHhchhc---hhhHH-HHHHHHHHhhcCCChHHHHHHHH
Q 002638 75 ESLPMLLNCLYESS-------ND-PKPAVKKESVRLLALVCELHSELT---STHVT-KIISHIVKRLKDSDSGMKEACRD 142 (898)
Q Consensus 75 e~Lp~fLs~L~es~-------~s-~k~~vRKeAIlLLG~IAEg~gd~I---~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~ 142 (898)
+.|.++|+++.+.. .+ .++...+.|+++|+.+.. .-... ...+. -|+++++..++++---++.-+|+
T Consensus 404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence 34777777776554 12 345566679999999988 33332 22333 36789999999999999999999
Q ss_pred HHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHhcCCch
Q 002638 143 SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLLSNQNF 220 (898)
Q Consensus 143 tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a--~d~~~~yL~~LlPRLlkLLks~~~ 220 (898)
.+..+....-+. .+.-.+......+|.++.-.|+.-|+.||.-++-+. .+.....++.+|.+|+.+-+.-..
T Consensus 483 ~is~~eeDfkd~------~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei 556 (970)
T COG5656 483 FISTIEEDFKDN------GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI 556 (970)
T ss_pred HHHHHHHhcccc------hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc
Confidence 999997777333 335667788888888888899999999999999753 333346778888888877664333
Q ss_pred hhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHH
Q 002638 221 MAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHE 253 (898)
Q Consensus 221 kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e 253 (898)
.+ +-.++-+++. ......||...++..|.+
T Consensus 557 D~---LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 557 DP---LSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred hH---HHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 22 2223333321 114566777777776654
No 93
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.13 Score=64.66 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=149.6
Q ss_pred HhHHHHHHHHHHHH-HcCCCh--hHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHHhc
Q 002638 36 LAMVEMKQKILTSL-SKLADR--DTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHS 111 (898)
Q Consensus 36 ~~~~eLK~rll~~L-~KLsDr--DT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~-s~k~~vRKeAIlLLG~IAEg~g 111 (898)
+..++....++..| ..|.|+ ..+-.|++.+-+++..++++...-.+.-+.+... -.....=.-++++|+.+|. .|
T Consensus 333 edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~-rG 411 (1133)
T KOG1943|consen 333 EDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL-RG 411 (1133)
T ss_pred cccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh-cC
Confidence 34455555555544 555544 4778999999999999986554344444443211 1112222367777776665 22
Q ss_pred hhchhhHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-----hcCC
Q 002638 112 ELTSTHVTKIISHIVKRLKDSD--------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-----MEQN 178 (898)
Q Consensus 112 d~I~PhLpkIL~~IlrrLkDpD--------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-----~eqn 178 (898)
=.+..-++.|+|.|++.|.=-+ ..||++||-.+=++++-+ .+ ..+..|+..|+-+| =|..
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray-s~------~~l~p~l~~L~s~LL~~AlFDre 484 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAY-SP------SDLKPVLQSLASALLIVALFDRE 484 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcC-Ch------hhhhHHHHHHHHHHHHHHhcCch
Confidence 2334468999999999885433 689999999999999988 22 11233555455444 3667
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHHhccccCcccHHHHHHHHHHh-
Q 002638 179 KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHEC- 254 (898)
Q Consensus 179 k~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k---aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~- 254 (898)
-++--||+.||...+---++.+ .=+.++.+-+|- .+..++..|.-.+ +.++.|...++..|+..
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p---------~Gi~Lis~~dy~sV~~rsNcy~~l~~~i---a~~~~y~~~~f~~L~t~K 552 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFP---------HGISLISTIDYFSVTNRSNCYLDLCVSI---AEFSGYREPVFNHLLTKK 552 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCC---------CchhhhhhcchhhhhhhhhHHHHHhHHH---HhhhhHHHHHHHHHHhcc
Confidence 7788889888887775422211 112233443332 2223333333322 46777888887776654
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhcchHHH-hhHHHHHHHHH
Q 002638 255 LGSTDWATRKAAADALSALALHSSNLVI-DGATSTLTVLE 293 (898)
Q Consensus 255 LsddDW~vRKaA~EaL~sLA~avge~L~-Py~~~~I~~LE 293 (898)
+.+=|-.+|..|+.+|..|....++.+. -|+.++|....
T Consensus 553 v~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l 592 (1133)
T KOG1943|consen 553 VCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL 592 (1133)
T ss_pred cccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc
Confidence 7777888999999999999999998777 44677776554
No 94
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.44 E-value=0.39 Score=59.29 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhH
Q 002638 39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV 118 (898)
Q Consensus 39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhL 118 (898)
+.|=..|+.... ..|.+..|.-.--|..+++. .|+..-..++.++...+++++..|-.|++.++.+= +...+
T Consensus 54 ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~------~~el~ 125 (757)
T COG5096 54 SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR------VKELL 125 (757)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC------hHHHH
Confidence 344444444444 45677777777778877764 34343345667777778899999999998886552 34567
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002638 119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (898)
Q Consensus 119 pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~-lL~pL~eaL~eqnk~VQegAasALAkiIE~a~ 197 (898)
+.+++.|.+.|.|+.+.||..|.-+|+.|-+.=-+ -.... ++..+-+.+.+.+|.|-..|..+|..+.+.
T Consensus 126 ~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~-------l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e-- 196 (757)
T COG5096 126 GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD-------LYHELGLIDILKELVADSDPIVIANALASLAEIDPE-- 196 (757)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-------hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh--
Confidence 78899999999999999999999988876643210 11222 344445555788999999999999888875
Q ss_pred CCCchhHHHHHHHHH
Q 002638 198 DPPVVAFQKLCARIC 212 (898)
Q Consensus 198 d~~~~yL~~LlPRLl 212 (898)
...+|+..++-.+-
T Consensus 197 -~a~~~~~~~~~~i~ 210 (757)
T COG5096 197 -LAHGYSLEVILRIP 210 (757)
T ss_pred -hhhhHHHHHHHHhh
Confidence 33455554443333
No 95
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.32 Score=60.11 Aligned_cols=223 Identities=12% Similarity=0.137 Sum_probs=152.6
Q ss_pred HHHHHHcCCChh--HHHHHHHHHHHHHhcCCCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH
Q 002638 45 ILTSLSKLADRD--THQIAIEDLEKTIQTLSQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT 119 (898)
Q Consensus 45 ll~~L~KLsDrD--T~k~Aa~eLD~Ia~~L~pe~---Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp 119 (898)
+-..+..+.|.. ++..|+.+|..++++=.+.. -..+|..+.++..+.++++==.||..+..+|+.+++.+.|-|
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL- 807 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDL- 807 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHH-
Confidence 444556665444 78899999999998432211 344577777888899999999999999999999888876544
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHh
Q 002638 120 KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 120 kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL----~eqnk~VQegAasALAkiIE~ 195 (898)
..+....=+-+.+.-|--.+++|+.++... + +.+..+..+|+... .+++-...+.++..|..+|.-
T Consensus 808 --~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~---G-----el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 808 --SEEYLSEKKKLQTDYRLKVGEAILKVAQAL---G-----ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred --HHHHHhcccCCCccceehHHHHHHHHHHHh---c-----cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 444444333343445555678888888887 2 44555666666665 355555678899999999987
Q ss_pred cCCCCchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH-hccccCcc----cHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 002638 196 ASDPPVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLS-QVGAIAPQ----SLEPLLQSIHECL-GSTDWATRKAAAD 268 (898)
Q Consensus 196 a~d~~~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA-~vGa~~~p----yld~lLp~L~e~L-sddDW~vRKaA~E 268 (898)
..-.....+..++..++.+.... .+.+|-+++.+|..+- +.|....| |+-.....+.... .++|-.+|..||.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 65555568888888888888764 6778889999888875 34532222 2223333333332 3466678999999
Q ss_pred HHHHHHHhcc
Q 002638 269 ALSALALHSS 278 (898)
Q Consensus 269 aL~sLA~avg 278 (898)
||-.|-.++.
T Consensus 958 ~leei~a~l~ 967 (982)
T KOG4653|consen 958 CLEEIQAALE 967 (982)
T ss_pred HHHHHHHHHH
Confidence 9888777665
No 96
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.37 E-value=0.0062 Score=45.17 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 247 LLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 247 lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
+||.+++++.|++|.+|.+|+.+|+.|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999864
No 97
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.074 Score=65.41 Aligned_cols=152 Identities=17% Similarity=0.249 Sum_probs=113.6
Q ss_pred HHHHHhcC-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002638 65 LEKTIQTL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDS 143 (898)
Q Consensus 65 LD~Ia~~L-~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~t 143 (898)
+.+++.++ -.+.++.|++.+.-...+.+...||-+-+-|...++.+++... --+.++.+-|+||++.+|..|..+
T Consensus 40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~AlR~ 115 (757)
T COG5096 40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFALRT 115 (757)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHHHH
Confidence 45555554 3456999999998777788899999999999999999995421 237789999999999999999988
Q ss_pred HHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHHhcCCchhh
Q 002638 144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKLLSNQNFMA 222 (898)
Q Consensus 144 LG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~-LlPRLlkLLks~~~ka 222 (898)
++.| + ..+.+..+++|+-+++.+.++.|-..|+.|+.++-+-.++. |.+. ++..+..++.+.+..+
T Consensus 116 ls~l-----~-----~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~V 182 (757)
T COG5096 116 LSLL-----R-----VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIV 182 (757)
T ss_pred HHhc-----C-----hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchH
Confidence 8743 1 23668899999999999999999999999999998743332 1222 4455555666666666
Q ss_pred HHHHHHHHHHH
Q 002638 223 KASLLPVVGSL 233 (898)
Q Consensus 223 K~alL~aIgSL 233 (898)
.+.++.++..+
T Consensus 183 i~nAl~sl~~i 193 (757)
T COG5096 183 IANALASLAEI 193 (757)
T ss_pred HHHHHHHHHHh
Confidence 66555554443
No 98
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.14 Score=62.43 Aligned_cols=217 Identities=20% Similarity=0.311 Sum_probs=150.3
Q ss_pred chhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH
Q 002638 31 SLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL 109 (898)
Q Consensus 31 ~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~-pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg 109 (898)
+..++-+.+++|.++...-. +.++.|+ .+++..+. ..++..+++-+...++..+-..+|-+.+-+.+-|.+
T Consensus 8 ~~~~k~ei~elks~l~s~~~-----~kr~~a~---kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~ 79 (734)
T KOG1061|consen 8 STDKKGEIPELKSQLNSQSK-----EKRKDAV---KKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG 79 (734)
T ss_pred CcchhhhchHHHHHhhhhhh-----hhHHHHH---HHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc
Confidence 34457799999999943333 5566665 55555542 335556666666566667788999999999999999
Q ss_pred hchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002638 110 HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (898)
Q Consensus 110 ~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasAL 189 (898)
+++.-.- -+.++++-..|+++.+|..|..++|.+- ....+..++.||..++.+.++.|+..|+.|.
T Consensus 80 ~P~~a~~----avnt~~kD~~d~np~iR~lAlrtm~~l~----------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~v 145 (734)
T KOG1061|consen 80 KPDLAIL----AVNTFLKDCEDPNPLIRALALRTMGCLR----------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCV 145 (734)
T ss_pred CchHHHh----hhhhhhccCCCCCHHHHHHHhhceeeEe----------ehHHHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence 9876221 2678999999999999999988776431 2355777899999999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc------ccCcccHHHHHHHHHHhhCCCCHHHH
Q 002638 190 AKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG------AIAPQSLEPLLQSIHECLGSTDWATR 263 (898)
Q Consensus 190 AkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG------a~~~pyld~lLp~L~e~LsddDW~vR 263 (898)
+++-...++.. .-..+++.|-.++.+.+..+-+.++.++.-+.... ....+++..+|..|-+| ..|.-
T Consensus 146 akl~~~~~~~~--~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec---~EW~q- 219 (734)
T KOG1061|consen 146 AKLFDIDPDLV--EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC---TEWGQ- 219 (734)
T ss_pred HHhhcCChhhc--cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh---hhhhH-
Confidence 99876433321 11236777777888888888778888887775322 12244444444443333 45664
Q ss_pred HHHHHHHHHHHHhcc
Q 002638 264 KAAADALSALALHSS 278 (898)
Q Consensus 264 KaA~EaL~sLA~avg 278 (898)
+..|..++..++
T Consensus 220 ---i~IL~~l~~y~p 231 (734)
T KOG1061|consen 220 ---IFILDCLAEYVP 231 (734)
T ss_pred ---HHHHHHHHhcCC
Confidence 566666777776
No 99
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.27 E-value=0.11 Score=52.64 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=98.8
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh-chhchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELH-SELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN 153 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~-gd~I~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik 153 (898)
.+.-+...|..-.++.++..|-.++.+++++++-| .+.+..|-..-+..+++.|+.+++ .+..+|+.+++.|...+.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35666666666667888999999999999999999 566778878888888888888875 7799999999999998844
Q ss_pred cc---ccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002638 154 GK---EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214 (898)
Q Consensus 154 ~~---~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkL 214 (898)
-. -+......+.|+.+|+..+.+ ..+...+..+|..++...+....++..++-..+..+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 21 011123455666666665543 566777888888888877766666666554444433
No 100
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.85 Score=55.90 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHH--------HH
Q 002638 73 SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRD--------SI 144 (898)
Q Consensus 73 ~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~--------tL 144 (898)
.||.+.++++.|.+.+.+..++|||-|+++++.|-.. .+.+.|--|.++...+-+=+||. .-|+|-.- ++
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERAL 205 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHH
Confidence 3677999999999999999999999999999988765 45667777888887777666664 12222211 11
Q ss_pred HHHHHHHhc-cccc----------------CCchhHHhhHHHHHHHHh-----------------cCCHhHHHHHHHHHH
Q 002638 145 GSLSKLYLN-GKEE----------------NNGTVVGLFVKPLFEAMM-----------------EQNKGVQSGAAMCMA 190 (898)
Q Consensus 145 G~LA~~lik-~~~e----------------~~~~~~~~lL~pL~eaL~-----------------eqnk~VQegAasALA 190 (898)
.-|...+.+ +.+. .....-..|++.++..|. .+++.+-.+|+.|+-
T Consensus 206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i 285 (948)
T KOG1058|consen 206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYI 285 (948)
T ss_pred HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHH
Confidence 111111100 0000 001112334555555552 246777788888888
Q ss_pred HHHHhcCC----CC------------chhHHHHHHHHHHHhcCCchhhHHHHHHH
Q 002638 191 KMVECASD----PP------------VVAFQKLCARICKLLSNQNFMAKASLLPV 229 (898)
Q Consensus 191 kiIE~a~d----~~------------~~yL~~LlPRLlkLLks~~~kaK~alL~a 229 (898)
.+++...+ ++ ...|..|+--++.+|++++..++.-+|+.
T Consensus 286 ~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 286 DLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred HHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 88776422 11 12366777778888888877666544443
No 101
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.25 Score=60.55 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhhhcC--------CCChhhHHHHH-HHHHHHHHHhchhchhhHHHHHHHHHHhhc
Q 002638 60 IAIEDLEKTIQTLSQESLPMLLNCLYESSN--------DPKPAVKKESV-RLLALVCELHSELTSTHVTKIISHIVKRLK 130 (898)
Q Consensus 60 ~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~--------s~k~~vRKeAI-lLLG~IAEg~gd~I~PhLpkIL~~IlrrLk 130 (898)
||-.-..-+..+++.=..|+++..|....+ +.+...+|.|+ -++|..+- +--.+.++=.-+...++.-|.
T Consensus 416 CaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~-~l~~~~dF~~Wl~~~llpEl~ 494 (978)
T KOG1993|consen 416 CAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAY-ELSNILDFDKWLQEALLPELA 494 (978)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHhhCHHhh
Confidence 444444444454444346777887754432 23455666654 45555444 333344432223333333333
Q ss_pred -C-C-ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhc---CCCCchh
Q 002638 131 -D-S-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECA---SDPPVVA 203 (898)
Q Consensus 131 -D-p-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq-nk~VQegAasALAkiIE~a---~d~~~~y 203 (898)
| + --.+|.-..|.||..++.= ...+.-+.+...++..|.++ +..|-.+++.+|..++|+. ++...+|
T Consensus 495 ~~~~~~RiiRRRVa~ilg~Wvsvq------~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~ 568 (978)
T KOG1993|consen 495 NDHGNSRIIRRRVAWILGQWVSVQ------QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPY 568 (978)
T ss_pred hcccchhHHHHHHHHHHhhhhhee------chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhh
Confidence 1 1 2356777788887766622 12355666777777777776 7888899999999999985 5666788
Q ss_pred HHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH-hccccCcccHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHhcc-
Q 002638 204 FQKLCARICKLLSN-QNFMAKASLLPVVGSLS-QVGAIAPQSLEPLLQSIHECL--GSTDWATRKAAADALSALALHSS- 278 (898)
Q Consensus 204 L~~LlPRLlkLLks-~~~kaK~alL~aIgSLA-~vGa~~~pyld~lLp~L~e~L--sddDW~vRKaA~EaL~sLA~avg- 278 (898)
++.+---++++|+. ..+.+|...|+.++.++ .++....||...+++.|-..- ..+..-+|-+.+-+|-.+..++|
T Consensus 569 lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~ 648 (978)
T KOG1993|consen 569 LENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA 648 (978)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc
Confidence 88887778888875 35778889999999996 466666688888777665542 22456789999999999999999
Q ss_pred --hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 279 --NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 279 --e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
..+-|++=++|++.- --...++|- ..-.++++|..+-.-
T Consensus 649 qS~~~~~fL~pVIel~~--D~~sP~hv~-L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 649 QSFEFYPFLYPVIELST--DPSSPEHVY-LLEDGMELWLTTLMN 689 (978)
T ss_pred CCccchHHHHHHHHHhc--CCCCCceee-hhhhHHHHHHHHHhc
Confidence 446666666665443 111222222 223589999988743
No 102
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.14 E-value=0.07 Score=58.31 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=108.1
Q ss_pred CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 75 ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 75 e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
+.++.+..-|. +.++.|.+|-+|..+||.+. -..+ ++++-+-.+||-..||.+|--+|.++=..-.-.
T Consensus 67 ~Av~~l~~vl~--desq~pmvRhEAaealga~~---~~~~-------~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 67 DAVPVLVEVLL--DESQEPMVRHEAAEALGAIG---DPES-------LEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred hhhHHHHHHhc--ccccchHHHHHHHHHHHhhc---chhh-------HHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 34666666555 34577999999999999886 2223 444444557999999999888887764322100
Q ss_pred cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638 155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (898)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA 234 (898)
. . .... |+ .. .++.+..-.....-|...+= +.-.+ +..|-..++.=.+.....++...+-++.
T Consensus 135 ~---~-~~~~----p~-~S-vdPa~p~~~ssv~~lr~~ll---d~t~~----l~~Ry~amF~LRn~g~EeaI~al~~~l~ 197 (289)
T KOG0567|consen 135 K---I-ANSS----PY-IS-VDPAPPANLSSVHELRAELL---DETKP----LFERYRAMFYLRNIGTEEAINALIDGLA 197 (289)
T ss_pred c---c-cccC----cc-cc-CCCCCccccccHHHHHHHHH---hcchh----HHHHHhhhhHhhccCcHHHHHHHHHhcc
Confidence 0 0 0000 00 01 23333311111222222221 11111 2222222221111111112222222221
Q ss_pred hccccCc---------ccHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002638 235 QVGAIAP---------QSLEPLLQSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV 303 (898)
Q Consensus 235 ~vGa~~~---------pyld~lLp~L~e~Lsd--dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpV 303 (898)
.-.+.|. ---+..+|.|.+.|.+ +...+|-.|+++|+.||. +.|+++|+..-.|..+-|
T Consensus 198 ~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv 267 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVV 267 (289)
T ss_pred cchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHH
Confidence 0001111 0112346777777765 568999999999999986 789999999999999999
Q ss_pred HHHHHHHHHHHH
Q 002638 304 RDSMNEALQLWK 315 (898)
Q Consensus 304 RD~A~eALelWK 315 (898)
|+...-||+...
T Consensus 268 ~esc~valdm~e 279 (289)
T KOG0567|consen 268 RESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHH
Confidence 987777777654
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.07 E-value=0.11 Score=56.54 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc-CCCCCHHH--HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch--h
Q 002638 39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT-LSQESLPM--LLNCLYESSNDPKPAVKKESVRLLALVCELHSE--L 113 (898)
Q Consensus 39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~-L~pe~Lp~--fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd--~ 113 (898)
.+| ++++..|....|...+..|+-.|-..+.. ...+.+.- -++.|...++++++.+|+.|+.+|.+++..... .
T Consensus 12 ~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 445 78888888889999999999888876542 11111111 145555556678899999999999988776553 3
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI 193 (898)
+..|+++|+..++.. .-++.++.++...|+.|+ +.. +....+..+++.|+..|...+..+|.-+.-+|..+-
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLt--v~~----~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLT--VTN----DYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccC--CCc----chhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 677888888877663 247788888888888775 211 112446678888999998888899988888888887
Q ss_pred HhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHH
Q 002638 194 ECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGS 232 (898)
Q Consensus 194 E~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgS 232 (898)
++.. ...+++. +.+..|+.+|+... .+..++.+|--
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~ 199 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSE--SKENLLRVLTF 199 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCC--ccHHHHHHHHH
Confidence 7531 1112222 45677777887542 23344444433
No 104
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.03 E-value=0.083 Score=55.02 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=74.0
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg-~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~ 155 (898)
+..||+.+.+-....+-++|--|...+.-+.+. .++.+.|.||+++.-|.+.|.-.++.|..+|..+|-.|+.-. .
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~-~-- 112 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS-D-- 112 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh-h--
Confidence 778888888888777888888888888888887 668899999999999999999999999999999999994433 1
Q ss_pred ccCCchhHHhhHHHHHHHH
Q 002638 156 EENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL 174 (898)
..++.+..+++.|+-.|
T Consensus 113 --~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 113 --MVGEALVPYYRQLLPVL 129 (183)
T ss_pred --hhhHHHHHHHHHHHHHH
Confidence 01233445555555555
No 105
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.01 E-value=0.95 Score=51.36 Aligned_cols=211 Identities=12% Similarity=0.171 Sum_probs=131.7
Q ss_pred HHhhhcCCCChhhHHHHHHHHHHHHHHhchh--------chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 83 CLYESSNDPKPAVKKESVRLLALVCELHSEL--------TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 83 ~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~--------I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
.|...+...+...||.+..++.++.+...+. +..|.|.|+..++++-.+||..+ ..|.+.+.+++.
T Consensus 80 ~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlRec~k~ 153 (335)
T PF08569_consen 80 LLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLRECIKH 153 (335)
T ss_dssp HHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHHHHTTS
T ss_pred HHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHHHHHhh
Confidence 3344445677889999999999998876433 33345999999999999998422 234444444332
Q ss_pred cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHHhcCCchhhHHHHHHHH
Q 002638 155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA----FQKLCARICKLLSNQNFMAKASLLPVV 230 (898)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~y----L~~LlPRLlkLLks~~~kaK~alL~aI 230 (898)
..=..--.....+-.+|+.+..++=.|..-|+..+..++-.-+....+| .+.....+.++|.+.+|-+|-..|.++
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 0000000011233347777777788888888888887776543333444 556778999999999999999999999
Q ss_pred HHHHh--cc-ccCcccHH--HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--h----HHHhhHHHHHHHHHhhhcCC
Q 002638 231 GSLSQ--VG-AIAPQSLE--PLLQSIHECLGSTDWATRKAAADALSALALHSS--N----LVIDGATSTLTVLEACRFDK 299 (898)
Q Consensus 231 gSLA~--vG-a~~~pyld--~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e----~L~Py~~~~I~~LE~~RfDK 299 (898)
|-+.- .. ..+..|+. ..|-.+...|.|....++-.|...+-.....-- + .+..-.+.+|++|.....|+
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99962 22 22222332 233345578899999999998888776544322 2 23333578899999888887
No 106
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.96 E-value=1.3 Score=55.15 Aligned_cols=214 Identities=17% Similarity=0.141 Sum_probs=142.5
Q ss_pred HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHS-ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 77 Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
+..||....... .+..+++|-.+++++--.+ + .-+.|.+|.|+-.|+.-..+....|-....++|...+..= +
T Consensus 488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d--p 562 (1005)
T KOG2274|consen 488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD--P 562 (1005)
T ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC--h
Confidence 344444333332 4566778888888774443 4 3479999999999999999999999999999888777654 2
Q ss_pred cccCCchhHHhhHHHHHHHH---hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh----hHHHHH
Q 002638 155 KEENNGTVVGLFVKPLFEAM---MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM----AKASLL 227 (898)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL---~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k----aK~alL 227 (898)
.+. ......+.|++-++ ...+|.|-.-+--|+.++++.+... .++-..++|-|+.+|..+.-+ .-..++
T Consensus 563 ef~---as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~~iPslisil~~~~~~~~~~l~~~ai 638 (1005)
T KOG2274|consen 563 EFA---ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQERLIPSLISVLQLNADKAPAGLCAIAI 638 (1005)
T ss_pred hhh---hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHcCcccccCchhhHHHH
Confidence 221 11223333444444 3456666667888888888864321 356778999999999987633 345788
Q ss_pred HHHHHHHhcc--ccCcccHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHHHHhcchHHHhh-------HHHHHHHHHhhhc
Q 002638 228 PVVGSLSQVG--AIAPQSLEPLLQSIHEC-LGSTDWATRKAAADALSALALHSSNLVIDG-------ATSTLTVLEACRF 297 (898)
Q Consensus 228 ~aIgSLA~vG--a~~~pyld~lLp~L~e~-LsddDW~vRKaA~EaL~sLA~avge~L~Py-------~~~~I~~LE~~Rf 297 (898)
+.|..++..+ ......+..+.|++.+| |..+|-.+--.+-|||.++.....+.+..+ +-.+|.++. ..+
T Consensus 639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~s-qLL 717 (1005)
T KOG2274|consen 639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLS-QLL 717 (1005)
T ss_pred HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHH-HHc
Confidence 8888887654 33344556677777777 566888899999999999887765444433 225555555 444
Q ss_pred CCC
Q 002638 298 DKI 300 (898)
Q Consensus 298 DKv 300 (898)
|+.
T Consensus 718 dp~ 720 (1005)
T KOG2274|consen 718 DPE 720 (1005)
T ss_pred CCc
Confidence 443
No 107
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.95 E-value=0.12 Score=65.41 Aligned_cols=171 Identities=17% Similarity=0.206 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHhcc-cccCCchhHHhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 002638 139 ACRDSIGSLSKLYLNG-KEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICK 213 (898)
Q Consensus 139 Ac~~tLG~LA~~lik~-~~e~~~~~~~~lL~pL~eaL~----eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlk 213 (898)
++-+.+.-+...+... -.-+....+..|+|-+.+.+. -++|..|.+|..||.+++= ....|...=+|-|+.
T Consensus 892 tseDd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~----iSa~fces~l~llft 967 (1251)
T KOG0414|consen 892 TSEDDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC----ISAEFCESHLPLLFT 967 (1251)
T ss_pred CcchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Confidence 3344455555555331 111124667788888888883 3589999999999999872 223566677788888
Q ss_pred Hhc-CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHH
Q 002638 214 LLS-NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVL 292 (898)
Q Consensus 214 LLk-s~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~L 292 (898)
++. +|+..+|..++-++|-++- -|+..++..-+.|...|.|++..+||.|.-+|..|-..--=++.-|+.. |
T Consensus 968 imeksp~p~IRsN~VvalgDlav---~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e----M 1040 (1251)
T KOG0414|consen 968 IMEKSPSPRIRSNLVVALGDLAV---RFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE----M 1040 (1251)
T ss_pred HHhcCCCceeeecchheccchhh---hcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH----H
Confidence 887 8999999888777777753 5788888999999999999999999999999998765443333333333 3
Q ss_pred HhhhcCCChhhHHHHHHHHHHHHHhhcCCCC
Q 002638 293 EACRFDKIKPVRDSMNEALQLWKKIAGKVDV 323 (898)
Q Consensus 293 E~~RfDKvKpVRD~A~eALelWK~La~~~d~ 323 (898)
--|--|.+..+|+. |=.|+|+++.+++.
T Consensus 1041 A~cl~D~~~~Isdl---Ak~FF~Els~k~n~ 1068 (1251)
T KOG0414|consen 1041 ALCLEDPNAEISDL---AKSFFKELSSKGNT 1068 (1251)
T ss_pred HHHhcCCcHHHHHH---HHHHHHHhhhcccc
Confidence 34555999988887 77899999977544
No 108
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.93 E-value=0.061 Score=60.78 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=88.5
Q ss_pred HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHHh
Q 002638 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ-------NFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~-------~~kaK~alL~aIgSLA~ 235 (898)
...|+.-+.+++.+.+......|..+|. . .+.|+.|+|+|+..+... +...-..++.++.++..
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~sL~---t------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQSLR---T------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhc---c------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 5667777888886666555544443321 1 134677888888777543 12222245555666654
Q ss_pred ccc-cCcccHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002638 236 VGA-IAPQSLEPLLQSIHECL----------GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV 303 (898)
Q Consensus 236 vGa-~~~pyld~lLp~L~e~L----------sddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpV 303 (898)
-.. ...+|+-.+||+++.|+ .++.|.+|.-|+.+|+.|....+........++++.+...-+|..+++
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 222 35899999999999986 236699999999999999999985444445677777777777877754
No 109
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.83 Score=57.32 Aligned_cols=224 Identities=13% Similarity=0.119 Sum_probs=142.8
Q ss_pred HHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-----
Q 002638 42 KQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT----- 114 (898)
Q Consensus 42 K~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I----- 114 (898)
.+.+++||... +|.+.|+.|=+.|.++-. .| .+...|.+|.- ..+..-++|.+|..-|++.+..++..-
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K--~p-gFv~~lLqIi~-~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~ 78 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEK--QP-GFVSSLLQIIM-DDGVPLPVRQAAAIYLKNKITKSWSSHEAPGR 78 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhc--CC-cHHHHHHHHHH-ccCCchhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 35678888766 677899999989988876 34 33333333332 234456789999999999998877543
Q ss_pred -----hhhHHHHHHHHHHhhcCCChHHHHHHHHHH-HHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHH
Q 002638 115 -----STHVTKIISHIVKRLKDSDSGMKEACRDSI-GSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (898)
Q Consensus 115 -----~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tL-G~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasA 188 (898)
..--+.|...|+..+-.....+|-+-..++ +.+...+ .+.|+.+++..-..|..++.+.--||..|
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~--------p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~ 150 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADY--------PEQWPGLLDKIKNLLQSQDANHVYGALLC 150 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC--------cccchhHHHHHHHHhcCcchhhHHHHHHH
Confidence 112344555666665555777887766666 3333333 25699999999999999999999999999
Q ss_pred HHHHHHhcC-------CCCc----hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH----hcc--------ccCcccHH
Q 002638 189 MAKMVECAS-------DPPV----VAFQKLCARICKLLSNQNFMAKASLLPVVGSLS----QVG--------AIAPQSLE 245 (898)
Q Consensus 189 LAkiIE~a~-------d~~~----~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA----~vG--------a~~~pyld 245 (898)
|..++..-+ ..+. .+++.|+.++..+|..++++.-. ++-.|-.+. .-. ..|.+.+.
T Consensus 151 l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~e-l~klIlKifks~~~~~LP~~L~~~~~f~~W~~ 229 (1010)
T KOG1991|consen 151 LYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVE-LQKLILKIFKSLIYYELPLELSAPETFTSWME 229 (1010)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHH-HHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence 999997641 1111 34566666666677777776432 222333322 111 12333333
Q ss_pred HHHHHHHHhh-----C-C-------CCHHHHHHHHHHHHHHHHhcc
Q 002638 246 PLLQSIHECL-----G-S-------TDWATRKAAADALSALALHSS 278 (898)
Q Consensus 246 ~lLp~L~e~L-----s-d-------dDW~vRKaA~EaL~sLA~avg 278 (898)
-++..+..-+ . | .=|..+|=|+-.|..+-...|
T Consensus 230 l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg 275 (1010)
T KOG1991|consen 230 LFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYG 275 (1010)
T ss_pred HHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhC
Confidence 3443332211 1 1 238899999999999998888
No 110
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.27 Score=60.14 Aligned_cols=228 Identities=17% Similarity=0.134 Sum_probs=113.0
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---hhHHHHHHHH---------HHhhcCCChHHHHHHHHH
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHI---------VKRLKDSDSGMKEACRDS 143 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---PhLpkIL~~I---------lrrLkDpDs~VR~Ac~~t 143 (898)
.+.+-.+.|+-...++++..|-+|++.|--+|-.|+..+. .-|+.++.-. ...|+--...--+.-...
T Consensus 279 ~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~q 358 (865)
T KOG1078|consen 279 ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQ 358 (865)
T ss_pred hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHH
Confidence 4555666777667888999999999999999998887642 2333333311 111211111001111111
Q ss_pred HHHHHHHHhcccccC------------CchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 002638 144 IGSLSKLYLNGKEEN------------NGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR 210 (898)
Q Consensus 144 LG~LA~~lik~~~e~------------~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPR 210 (898)
|..++..+.++ +-- -...|..++.-|...|- +-.-.-..+..-|+-.++|..++.-...|..||.-
T Consensus 359 I~~fv~disDe-FKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCef 437 (865)
T KOG1078|consen 359 ISSFVSDISDE-FKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEF 437 (865)
T ss_pred HHHHHHhcccc-ceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 12222222110 000 00113333333333332 11222223344444555554444333344444443
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002638 211 ICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT 290 (898)
Q Consensus 211 LlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~ 290 (898)
+. + +.-...+...++-+ +......+.=...+..+.+.+.-++.-+|.+|..+|..++ +-.+.+ .+++..
T Consensus 438 IE---D---ce~~~i~~rILhlL-G~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg-~~~~~l---~~sI~v 506 (865)
T KOG1078|consen 438 IE---D---CEFTQIAVRILHLL-GKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG-AQDVVL---LPSILV 506 (865)
T ss_pred HH---h---ccchHHHHHHHHHH-hccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh-cCCCCc---cccHHH
Confidence 33 1 11111112222221 1111122222234444555555567889999999999988 222333 256777
Q ss_pred HHHhhhcCCChhhHHHHHHHHHHHH
Q 002638 291 VLEACRFDKIKPVRDSMNEALQLWK 315 (898)
Q Consensus 291 ~LE~~RfDKvKpVRD~A~eALelWK 315 (898)
.|..|.+|++..|||.|.-+|....
T Consensus 507 llkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHhh
Confidence 8889999999999999888877765
No 111
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.88 E-value=0.34 Score=57.67 Aligned_cols=204 Identities=17% Similarity=0.176 Sum_probs=128.2
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I-~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
.+..+-++|..-..+.--.+--++-+++-.+++ +.+ ..++...++.+..-|+-+....|-+|..+|.+|+..+.+
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~---~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~- 336 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSE---ENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ- 336 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHH---hccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-
Confidence 355556666555544334455555555544444 444 346778888888889999999999999999999988832
Q ss_pred cccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002638 155 KEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL 233 (898)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL 233 (898)
...++.+=++.| .+.|+.+-. +|+..++..-. .+-++.|+..+..++.+-+-..|-.++++|.++
T Consensus 337 --------kv~vcN~evEsLIsd~Nr~Ist---yAITtLLKTGt---~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsL 402 (898)
T COG5240 337 --------KVSVCNKEVESLISDENRTIST---YAITTLLKTGT---EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSL 402 (898)
T ss_pred --------eeeecChhHHHHhhcccccchH---HHHHHHHHcCc---hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHH
Confidence 122444545555 677877654 45555554322 233455555555555542222334778888888
Q ss_pred HhccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCC
Q 002638 234 SQVGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKI 300 (898)
Q Consensus 234 A~vGa~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKv 300 (898)
.- .|+.--..++..|.+.|.+ .-...++.++|+|..+....|+-=.--+..+-.++|.|.|.++
T Consensus 403 sl---~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I 467 (898)
T COG5240 403 SL---LFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQI 467 (898)
T ss_pred Hh---hCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHH
Confidence 53 4665566667677666554 4678899999999998888875333334444556666766665
No 112
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.74 E-value=0.093 Score=53.23 Aligned_cols=142 Identities=11% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-----SDSGMKEACRDSIGSLSKL 150 (898)
Q Consensus 77 Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkD-----pDs~VR~Ac~~tLG~LA~~ 150 (898)
+|.+|..|..-+ .+..+..|+|++++||.+. ++-||.-+.+. ..+.+ ......+.... ...
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~---~~~~~~~~~~~~~~~~~~~l~-----~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQ---KSLDSKSSENSNDESTDISLP-----MMG 74 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhccc---ccCCccccccccccchhhHHh-----hcc
Confidence 455555555443 2345999999999999874 46666655222 22221 11112221111 111
Q ss_pred HhcccccCCchhHH-hhHHHHHHHHhcCC-HhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 002638 151 YLNGKEENNGTVVG-LFVKPLFEAMMEQN-KGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLP 228 (898)
Q Consensus 151 lik~~~e~~~~~~~-~lL~pL~eaL~eqn-k~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~ 228 (898)
+ .+ ..+++++ .++..|+..|.++. .....++..|+-.++...+....+||++++|.++..+++-....++.++.
T Consensus 75 ~-~~---~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~ 150 (160)
T PF11865_consen 75 I-SP---SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQ 150 (160)
T ss_pred C-CC---chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHH
Confidence 1 00 1123333 35567777776653 33445788888888877766778999999999999999655577777777
Q ss_pred HHHHHHh
Q 002638 229 VVGSLSQ 235 (898)
Q Consensus 229 aIgSLA~ 235 (898)
-++.++.
T Consensus 151 qL~~lv~ 157 (160)
T PF11865_consen 151 QLADLVS 157 (160)
T ss_pred HHHHHHH
Confidence 7777653
No 113
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.72 E-value=1 Score=55.01 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=122.2
Q ss_pred HHHHHHHHhcC---CC--CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638 62 IEDLEKTIQTL---SQ--ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (898)
Q Consensus 62 a~eLD~Ia~~L---~p--e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V 136 (898)
+.-|.+++..| ++ +.+..++.+|+....+.+-.||.-++.+|..+...-.+---....+++-.+..||.|-.|.|
T Consensus 63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V 142 (892)
T KOG2025|consen 63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV 142 (892)
T ss_pred HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence 34445555544 33 23788899999888888899999999999888873333335567889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHH-------HHHHhcCCCCch----hH
Q 002638 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMA-------KMVECASDPPVV----AF 204 (898)
Q Consensus 137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALA-------kiIE~a~d~~~~----yL 204 (898)
|-.|+.++.+|=..-.++ .. .+...|...+ .++++.|..+|.+|++ .++|.+.+.... ..
T Consensus 143 RiqAv~aLsrlQ~d~~de-------e~-~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY 214 (892)
T KOG2025|consen 143 RIQAVLALSRLQGDPKDE-------EC-PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVY 214 (892)
T ss_pred HHHHHHHHHHHhcCCCCC-------cc-cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHH
Confidence 999999988765422111 12 2444444445 5789999999888764 466655443321 13
Q ss_pred HHHHHHH--------------HHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHH
Q 002638 205 QKLCARI--------------CKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST-DWATRKAAADA 269 (898)
Q Consensus 205 ~~LlPRL--------------lkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsdd-DW~vRKaA~Ea 269 (898)
..++|++ -.-|++..+-+|.++.++|.+= ...+.+.=++-+++.|.-+ ...++..|+++
T Consensus 215 ~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~------Wl~~~dgni~ElL~~ldvsnss~vavk~lea 288 (892)
T KOG2025|consen 215 ERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSG------WLRFSDGNILELLERLDVSNSSEVAVKALEA 288 (892)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH------HhhhccccHHHHHHHhccccchHHHHHHHHH
Confidence 3344443 2222333444555554444331 1112222334445555443 34777788888
Q ss_pred HHH
Q 002638 270 LSA 272 (898)
Q Consensus 270 L~s 272 (898)
|-.
T Consensus 289 lf~ 291 (892)
T KOG2025|consen 289 LFS 291 (892)
T ss_pred HHH
Confidence 776
No 114
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.41 Score=58.97 Aligned_cols=258 Identities=13% Similarity=0.113 Sum_probs=161.8
Q ss_pred CChhHHHH-HHHHHHHHHhcCCCCCHHHHHHHH---hhh---cCCCChhhHHHHHHHHHHHHHH-----hc----hhchh
Q 002638 53 ADRDTHQI-AIEDLEKTIQTLSQESLPMLLNCL---YES---SNDPKPAVKKESVRLLALVCEL-----HS----ELTST 116 (898)
Q Consensus 53 sDrDT~k~-Aa~eLD~Ia~~L~pe~Lp~fLs~L---~es---~~s~k~~vRKeAIlLLG~IAEg-----~g----d~I~P 116 (898)
+|-|||+- |.+-+..+...+.....+.|..++ .+. ..+.+|..+..++.++..+|-- || ..+.+
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 68888775 455555666666543344444443 332 2477899999999999888755 22 12344
Q ss_pred hHHHHHHHHHHhhcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638 117 HVTKIISHIVKRLKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (898)
Q Consensus 117 hLpkIL~~IlrrLkDp----Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki 192 (898)
........|++-|..| .|.++..+.+-+-.+=.++ +.++.-.+++.|+..|......|-.-||.|+.++
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql-------~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEki 525 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL-------GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKL 525 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccC-------ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhc
Confidence 4444455555555553 4777776665444433333 2255667888888888878888888999999998
Q ss_pred HH---hc------CCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCC-----
Q 002638 193 VE---CA------SDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGS----- 257 (898)
Q Consensus 193 IE---~a------~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~Lsd----- 257 (898)
.= .. ...+.+|+-.++..|++.++.|.-.=-+.++.||-.++.+- ....|++..+++.|.+++..
T Consensus 526 l~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNP 605 (960)
T KOG1992|consen 526 LTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNP 605 (960)
T ss_pred cccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCC
Confidence 63 31 22334667777777887777664422236788888887766 45678999999988887543
Q ss_pred CCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 258 TDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 258 dDW~vRKaA~EaL~sLA~avg----e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
.+...=--..|+++.+-...+ ..+..+-..++.+++.--...+. |..=.++++...+--.
T Consensus 606 s~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~---EfiPYvfQlla~lve~ 669 (960)
T KOG1992|consen 606 SNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ---EFIPYVFQLLAVLVEH 669 (960)
T ss_pred CCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 233333344555555444443 44555556666666644444444 7888888888888744
No 115
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.26 Score=59.41 Aligned_cols=187 Identities=18% Similarity=0.209 Sum_probs=126.7
Q ss_pred hhHHHHHHH-HHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638 116 THVTKIISH-IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 116 PhLpkIL~~-IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE 194 (898)
+|-++-+.- ++.-..|.|+.||.+|.+++=+|..-+ + ..........+.|.+.+..|..+|...+--.-.
T Consensus 193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-k--------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn 263 (823)
T KOG2259|consen 193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-K--------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGN 263 (823)
T ss_pred cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-c--------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 344444444 777788999999999999988888733 2 345567778888888888888877655443333
Q ss_pred hcCC------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHH-HHHH-----------------
Q 002638 195 CASD------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQ----------------- 249 (898)
Q Consensus 195 ~a~d------~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld-~lLp----------------- 249 (898)
-.+- ......+...-++|..+.+-...+|..+-.++|.+-++. ....+-++ .+|.
T Consensus 264 ~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 264 RCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred cCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 2211 112346677788888888877777766666666654333 22211111 1222
Q ss_pred ---------------------------------HHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhh
Q 002638 250 ---------------------------------SIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACR 296 (898)
Q Consensus 250 ---------------------------------~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~R 296 (898)
.+...|.|+-..+|++|.+.|+.||...+. |...++.+|-..-
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMf 419 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMF 419 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHh
Confidence 122335566689999999999999999987 6778888888888
Q ss_pred cCCChhhHHHHHHHHHHHH
Q 002638 297 FDKIKPVRDSMNEALQLWK 315 (898)
Q Consensus 297 fDKvKpVRD~A~eALelWK 315 (898)
+|.+..||--++.||....
T Consensus 420 NDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 8999999988777765543
No 116
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.71 E-value=0.23 Score=50.51 Aligned_cols=137 Identities=9% Similarity=0.076 Sum_probs=102.0
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKM 192 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq-nk~VQegAasALAki 192 (898)
....+.+.+..|...|+++++.-|.+.+..++.++.+.--+.+. ......+..|+..|..+ .+.+-+.|+.+|..+
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~---~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILL---SHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 35578999999999999999999999999999988886212121 22445566677777544 567889999999999
Q ss_pred HHhcCC-------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhh
Q 002638 193 VECASD-------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECL 255 (898)
Q Consensus 193 IE~a~d-------~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~L 255 (898)
++.... ...+.++.+++-++++++. ......+++++..+...- ..|.||...+-..+..++
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 998622 2236688888888888886 334567888888887643 678888888877776654
No 117
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.64 E-value=0.093 Score=48.83 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=64.9
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHh
Q 002638 86 ESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL 165 (898)
Q Consensus 86 es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~ 165 (898)
....++.+++|-+++..|..+++... .....+++|+..++..|+|+|+.|--.|..+++.|+.... ..
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----------~~ 77 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----------DE 77 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----------HH
Confidence 33457789999999999999999877 5566789999999999999999999999999999999982 23
Q ss_pred hHHHHHHHHh
Q 002638 166 FVKPLFEAMM 175 (898)
Q Consensus 166 lL~pL~eaL~ 175 (898)
+++.|++.-.
T Consensus 78 vl~~L~~~y~ 87 (92)
T PF10363_consen 78 VLPILLDEYA 87 (92)
T ss_pred HHHHHHHHHh
Confidence 5666666553
No 118
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.89 Score=59.33 Aligned_cols=216 Identities=18% Similarity=0.136 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHH---hh-hcCCCChhhHHHHHHHHHHHHHHhc
Q 002638 38 MVEMKQKILTSLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNCL---YE-SSNDPKPAVKKESVRLLALVCELHS 111 (898)
Q Consensus 38 ~~eLK~rll~~L~KLs--DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L---~e-s~~s~k~~vRKeAIlLLG~IAEg~g 111 (898)
..++..++-.++.||. |.-|.--|+++|-.++.+.+.+.+-.+|++. +. -.-+.+..+|......+..+...+.
T Consensus 36 ~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 36 VLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred HhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999994 6669999999999999877655443434333 32 2467889999999999999999999
Q ss_pred hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-----------------
Q 002638 112 ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM----------------- 174 (898)
Q Consensus 112 d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL----------------- 174 (898)
+.++|||..++|..+-...|.+..|..++-.+.......-- ....|-.+-+.++..+
T Consensus 116 k~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek------~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~ 189 (1312)
T KOG0803|consen 116 KKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEK------DRHVWFKCDPEIFYLVTEILVKETPDSLSDLRT 189 (1312)
T ss_pred HHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhh------hHHHHHHhhHHHHHHHHHHHhccCccccchhhh
Confidence 99999999999999999999998888887776543322110 0011111111111111
Q ss_pred ------hcCCHhHHHHHHHHHHHHHHh-cCCCCch---h-HH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cccc-
Q 002638 175 ------MEQNKGVQSGAAMCMAKMVEC-ASDPPVV---A-FQ--KLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAI- 239 (898)
Q Consensus 175 ------~eqnk~VQegAasALAkiIE~-a~d~~~~---y-L~--~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~- 239 (898)
....++|-..+..||.++... .++.... + +. .--..+-++++++...+|.++++++-++.. +-..
T Consensus 190 ~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~ 269 (1312)
T KOG0803|consen 190 LSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV 269 (1312)
T ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc
Confidence 123456667788888888844 3222211 1 22 234678888899999999999999999875 2222
Q ss_pred CcccHHHHHHHHHHhhCCCC
Q 002638 240 APQSLEPLLQSIHECLGSTD 259 (898)
Q Consensus 240 ~~pyld~lLp~L~e~LsddD 259 (898)
.+.....+.+.+.....+.|
T Consensus 270 ~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 270 MESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred chhhhhHhhHHHHccccccc
Confidence 34444455555555555544
No 119
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.62 E-value=1.6 Score=46.77 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=115.5
Q ss_pred HHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh
Q 002638 49 LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR 128 (898)
Q Consensus 49 L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr 128 (898)
+.+-.+...+...+..|-.++.+=. ...++++..|..-....+...+--+++++-.+... .+...|+|..++-....+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-~~r~f~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-NDRHFPFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHhh
Confidence 5555666666677777777665322 34666666665544444444455666777666653 333447777776664433
Q ss_pred ----hcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002638 129 ----LKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPV 201 (898)
Q Consensus 129 ----LkDpDs--~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~ 201 (898)
..+.+. .+.-++..++..++...- ..+..+++.|...| .+.++.+|.-|..+|+.+|+..--.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p--------~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRP--------DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhCh--------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHH
Confidence 222232 222333344555555441 25888999999999 788999999999999999975322222
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh---cc----ccCcccHHHHHHHHHHhhCCCC
Q 002638 202 VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ---VG----AIAPQSLEPLLQSIHECLGSTD 259 (898)
Q Consensus 202 ~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~---vG----a~~~pyld~lLp~L~e~LsddD 259 (898)
....-|.++| ....++.++..+.++.. -+ +........++..+-++....+
T Consensus 159 s~w~vl~~~l-------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 159 SAWKVLQKKL-------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHhc-------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 3344555555 23334556665555542 11 2345566677777778877766
No 120
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.82 Score=56.28 Aligned_cols=238 Identities=16% Similarity=0.249 Sum_probs=151.2
Q ss_pred HHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHH
Q 002638 43 QKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120 (898)
Q Consensus 43 ~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpk 120 (898)
.++...|-+| +.+.++-+.++.+-.|... .|..|.+++.-++-.. ++...++.-=+..|.+++.-. .+..
T Consensus 321 ~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~-~~~lF~P~lKsFfv~s-sDp~~vk~lKleiLs~La~es------ni~~ 392 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNREVQYVVLQNIATISIK-RPTLFEPHLKSFFVRS-SDPTQVKILKLEILSNLANES------NISE 392 (968)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHhc-chhhhhhhhhceEeec-CCHHHHHHHHHHHHHHHhhhc------cHHH
Confidence 3445555555 7788888888888887753 4544555555444322 222334444555555555422 3455
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP 200 (898)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~ 200 (898)
|+.-+..=++++|-.+-.+++.+||+.+..+. ..-+..|..|+..|...+..|-..|...+.++++.-+...
T Consensus 393 ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 393 ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC--------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence 66666666778888899999999999998883 3356789999999988899999999999999999644332
Q ss_pred chhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcch
Q 002638 201 VVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSN 279 (898)
Q Consensus 201 ~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge 279 (898)
.+++-+|.+++.+- ...+|+..|=+||-.+. ..+--+..++..+..-++++...+|-.++...+.|...-.+
T Consensus 465 ----~~ii~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~ 537 (968)
T KOG1060|consen 465 ----LEILFQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID 537 (968)
T ss_pred ----HHHHHHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh
Confidence 24666667777542 34455554444444432 33444456666677778888888986666666555544443
Q ss_pred HHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638 280 LVIDGATSTLTVLEACRFDKIKPVRDS 306 (898)
Q Consensus 280 ~L~Py~~~~I~~LE~~RfDKvKpVRD~ 306 (898)
. ...=+.-+++--+||-.=-+||-
T Consensus 538 ~---~kll~~Yv~~L~~yD~sYDiRDR 561 (968)
T KOG1060|consen 538 Q---TKLLVQYVFELARYDLSYDIRDR 561 (968)
T ss_pred h---HHHHHHHHHHHhccCCCcchhHH
Confidence 2 22223345667777765556663
No 121
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.56 Score=55.12 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD 133 (898)
+..++-.+.....+++...|..|++.||+.++++++.+..|-++++-.|+++|-|+.
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~ 312 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL 312 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC
Confidence 667777777777788889999999999999999999999999999999999999986
No 122
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=1.9 Score=52.70 Aligned_cols=219 Identities=13% Similarity=0.155 Sum_probs=131.4
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh--chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL--TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~--I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
|..++.++.---..+.. =.-.+..+....+..++. -...+.+++-+|+++..-++-.||--||..|+.++.....
T Consensus 42 flr~vn~il~vkKresi--~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e- 118 (892)
T KOG2025|consen 42 FLRVVNYILLVKKRESI--PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE- 118 (892)
T ss_pred HHHHHHHheeeccCCCc--HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-
Confidence 55556655433222211 122444455555554433 3457889999999999999999999999999988884421
Q ss_pred cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc-CCchhhHHHHHHHHHH-
Q 002638 155 KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQNFMAKASLLPVVGS- 232 (898)
Q Consensus 155 ~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLk-s~~~kaK~alL~aIgS- 232 (898)
-.+..+..+...|...|-+..|.|..-|..||.++-++..+..-+.. .-+..+++ +|+..+|-++|.+|.-
T Consensus 119 ---idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~----n~l~~liqnDpS~EVRRaaLsnI~vd 191 (892)
T KOG2025|consen 119 ---IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVV----NLLKDLIQNDPSDEVRRAALSNISVD 191 (892)
T ss_pred ---cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHH----HHHHHHHhcCCcHHHHHHHHHhhccC
Confidence 12366888888888888888999999999999999876544333333 33344444 4788888887776542
Q ss_pred ------HH----hcc-ccCc--------------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHH
Q 002638 233 ------LS----QVG-AIAP--------------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATS 287 (898)
Q Consensus 233 ------LA----~vG-a~~~--------------pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~ 287 (898)
+. .|. +.-. -.++..+.-|...|.|.+..+|+++.++|.+ +.+.-.-..
T Consensus 192 nsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~------~Wl~~~dgn 265 (892)
T KOG2025|consen 192 NSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS------GWLRFSDGN 265 (892)
T ss_pred cccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH------HHhhhcccc
Confidence 11 010 0000 0111222223344666677777777776642 333333467
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638 288 TLTVLEACRFDKIKPVRDSMNEALQLW 314 (898)
Q Consensus 288 ~I~~LE~~RfDKvKpVRD~A~eALelW 314 (898)
+++.|+..---.-. +++..||+++
T Consensus 266 i~ElL~~ldvsnss---~vavk~leal 289 (892)
T KOG2025|consen 266 ILELLERLDVSNSS---EVAVKALEAL 289 (892)
T ss_pred HHHHHHHhccccch---HHHHHHHHHH
Confidence 77777754444444 3444455543
No 123
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.48 E-value=5.8 Score=45.46 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638 95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 95 vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL 174 (898)
+=.+.+.++..+..-+++.+..+...=++.++..+-+....||..| .+++..+...+.+
T Consensus 150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a-~~l~~~~~~~l~~-------------------- 208 (372)
T PF12231_consen 150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKA-ISLLLEAKKCLGP-------------------- 208 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHhCh--------------------
Confidence 4456777777888888888888888888888888888888888874 3344444433221
Q ss_pred hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHH
Q 002638 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIH 252 (898)
Q Consensus 175 ~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~ 252 (898)
++.+.. .+..+.+..-.. ..|.+.++++|.+++.+ .+++.=..+=.++-.+.+.. -..-.|+...+....
T Consensus 209 ---~~~~s~----~~~~~~~~~~~~-~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e 280 (372)
T PF12231_consen 209 ---NKELSK----SVLEDLQRSLEN-GKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPE 280 (372)
T ss_pred ---hHHHHH----HHHHHhcccccc-ccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHH
Confidence 222211 111111111111 15788899999999998 45542222222222222111 123678999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHh-----hHHHHHHHHHhhhcCCCh-hhHHHHHHHH
Q 002638 253 ECLGSTDWATRKAAADALSALALHSS--NLVID-----GATSTLTVLEACRFDKIK-PVRDSMNEAL 311 (898)
Q Consensus 253 e~LsddDW~vRKaA~EaL~sLA~avg--e~L~P-----y~~~~I~~LE~~RfDKvK-pVRD~A~eAL 311 (898)
.|+.+.|..+|.+|..+--.+..+.. +.-.+ ...+++..++....++.+ .+|+.++..+
T Consensus 281 ~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l 347 (372)
T PF12231_consen 281 KCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSL 347 (372)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHH
Confidence 99999999999999999888777665 22212 224444444555555555 6777654433
No 124
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.44 E-value=0.13 Score=49.25 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhcCCCC----hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPK----PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k----~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
+-.++..+.+.+.+.+ ...|+.++++++.+.+.++..+..++|+|+.++...|..++ +|..|..+-..|...+
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L 85 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhC
Confidence 4455666665554433 34699999999999999999999999999999999998665 9999999999999999
No 125
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.40 E-value=0.15 Score=48.46 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhcCC----CChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSND----PKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 77 Lp~fLs~L~es~~s----~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
+-.++.++-+.+.+ .....|+.++..++.+.+.++..+.+++|+|+.++...|..+ .+|..|+.+-..+...+
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHC
Confidence 44555666555433 456689999999999999999999999999999999999887 79999999999999999
No 126
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=2.8 Score=51.51 Aligned_cols=244 Identities=12% Similarity=0.129 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhc-CC---CCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHh
Q 002638 39 VEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQT-LS---QES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELH 110 (898)
Q Consensus 39 ~eLK~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~-L~---pe~---Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~ 110 (898)
+.|.++|+.-|+.+ ...-.-..-.+++..++.- +. ++. +...+.-|.....+.++..|--++++++-|+..|
T Consensus 251 PRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH 330 (877)
T KOG1059|consen 251 PRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH 330 (877)
T ss_pred chhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence 56777777777777 3333334455667766653 11 223 4444555556667888899999999999999999
Q ss_pred chhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHH
Q 002638 111 SELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMA 190 (898)
Q Consensus 111 gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALA 190 (898)
+..+..|. ..|+++|.|.|..||--+.+.+--++.. +.+.++++-|+..+....... ---.-|.
T Consensus 331 p~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmVsk----------kNl~eIVk~LM~~~~~ae~t~--yrdell~ 394 (877)
T KOG1059|consen 331 PKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMVSK----------KNLMEIVKTLMKHVEKAEGTN--YRDELLT 394 (877)
T ss_pred HHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHhccchh--HHHHHHH
Confidence 99998886 4578899999999999888865444332 336778888888773222100 0001122
Q ss_pred HHHHhc---CCCCchhHHHHHHHHHHHhcCCchh----hHHHHHHHHHHHHhccccCcccHHHHHHHHHH-hhCCCCHHH
Q 002638 191 KMVECA---SDPPVVAFQKLCARICKLLSNQNFM----AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHE-CLGSTDWAT 262 (898)
Q Consensus 191 kiIE~a---~d~~~~yL~~LlPRLlkLLks~~~k----aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e-~LsddDW~v 262 (898)
++|+-+ ......-++-.+--|..+.+=++.+ +-..+++.- +.| ....++.-..|..|+. .+...+-+.
T Consensus 395 ~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~---iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~ 470 (877)
T KOG1059|consen 395 RIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA---IRV-PSIRPFSVSQMSALLDDPLLAGSAQI 470 (877)
T ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh---eec-hhhhHhHHHHHHHHHhchhhccchhh
Confidence 333322 1111100111111112222211111 111111110 111 1222222233333322 233335677
Q ss_pred HHHHHHHHHHHHHhcchHHH--hhHHHHHHHHHhhhcCCChh
Q 002638 263 RKAAADALSALALHSSNLVI--DGATSTLTVLEACRFDKIKP 302 (898)
Q Consensus 263 RKaA~EaL~sLA~avge~L~--Py~~~~I~~LE~~RfDKvKp 302 (898)
+..-|+.|.+.|=.+|++-. ..-..++++|..-++|..++
T Consensus 471 n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~ 512 (877)
T KOG1059|consen 471 NSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPG 512 (877)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCch
Confidence 77789999998888886432 23467788888888776654
No 127
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.36 E-value=0.62 Score=55.66 Aligned_cols=136 Identities=7% Similarity=0.088 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhc-------hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELT-------STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS 148 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I-------~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA 148 (898)
+..++..+........+..|..|++++|.++..+. +.- ..+++++...+-....+.+...+..+..+||.+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 44444444433334467899999999999999544 321 3456666666666666677778888888888654
Q ss_pred HHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC--chhhHHHH
Q 002638 149 KLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ--NFMAKASL 226 (898)
Q Consensus 149 ~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~--~~kaK~al 226 (898)
..- ...++.|++..-......++.+|+.||.++.+..+.. +-+.|++++.+. +..+|.++
T Consensus 475 ~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 HPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-------VQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred Chh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-------HHHHHHHHHcCCCCChHHHHHH
Confidence 433 1223444443112346678899999999988755443 566677777765 55667655
Q ss_pred HHHH
Q 002638 227 LPVV 230 (898)
Q Consensus 227 L~aI 230 (898)
+.++
T Consensus 537 ~~~l 540 (574)
T smart00638 537 VLVL 540 (574)
T ss_pred HHHH
Confidence 4443
No 128
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.31 E-value=0.26 Score=51.30 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH-----------HHHHHH-hcCCHhHHHHHHHHHHHHHHhcC-----
Q 002638 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK-----------PLFEAM-MEQNKGVQSGAAMCMAKMVECAS----- 197 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~-----------pL~eaL-~eqnk~VQegAasALAkiIE~a~----- 197 (898)
.||.++..++..++..+-+..+ -.+|+.|+| .|+..+ .|+++.|..+|+.+|+.++|+..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l---~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSL---FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCcee---HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 3899999999999998622111 134555553 445555 68999999999999999999861
Q ss_pred ----C----CCchh-------HHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcc---ccCcccHHHHHHHHHHhhCCC
Q 002638 198 ----D----PPVVA-------FQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECLGST 258 (898)
Q Consensus 198 ----d----~~~~y-------L~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vG---a~~~pyld~lLp~L~e~Lsdd 258 (898)
. -..++ +-.+=-.|+.+|.+. +...-..++.|+..++.+- ..-..++..++..+..++.+.
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 1 11111 233345556666654 4556668899999988643 233677888888888999999
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 002638 259 DWATRKAAADALSALALHSS 278 (898)
Q Consensus 259 DW~vRKaA~EaL~sLA~avg 278 (898)
|..+|-++.-+++.+....+
T Consensus 158 d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CCcHHHHHHHHHHHHHcCCC
Confidence 99999999999999887654
No 129
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.30 E-value=2 Score=48.18 Aligned_cols=190 Identities=13% Similarity=0.228 Sum_probs=118.5
Q ss_pred HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHHHHHHHhchhc
Q 002638 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLALVCELHSELT 114 (898)
Q Consensus 36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKe-AIlLLG~IAEg~gd~I 114 (898)
..+.-+|+.++..+...-++ +..++.+..++ +++++..++.--.+..|..|.. .+.+++++++..++.+
T Consensus 38 ~~lr~iKkeIL~Li~t~i~~------~~~~~~v~~~~----i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~ 107 (319)
T PF08767_consen 38 RLLRTIKKEILKLIETFISK------AEDPEEVANNF----IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI 107 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------S-HHHHHHHT----HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhc------cCCHHHHHHHH----HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh
Confidence 34555666666666554111 11233333322 6677775543333345667766 7778888999999988
Q ss_pred hhhHHHHHHHHHHh----hcC---CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH
Q 002638 115 STHVTKIISHIVKR----LKD---SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM 187 (898)
Q Consensus 115 ~PhLpkIL~~Ilrr----LkD---pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas 187 (898)
.++++.|+..+... +.+ .-|..|..--.-|..+..+++.--..-..+.+..++..+.-++...++.+.+.++.
T Consensus 108 ~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~ 187 (319)
T PF08767_consen 108 QPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLN 187 (319)
T ss_dssp CCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99998888877665 332 12899999999999999887542111123556777777777778899999999999
Q ss_pred HHHHHHHhcCCCCc--------hhHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHHh
Q 002638 188 CMAKMVECASDPPV--------VAFQKLCARICKLLSNQ----NFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 188 ALAkiIE~a~d~~~--------~yL~~LlPRLlkLLks~----~~kaK~alL~aIgSLA~ 235 (898)
+|..+++....... .|+-.++..++.++-+. .|+....+|..+-.++.
T Consensus 188 ~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 188 ILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999998633111 23445666666666554 23344444444444443
No 130
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=5.2 Score=49.91 Aligned_cols=243 Identities=15% Similarity=0.195 Sum_probs=138.4
Q ss_pred CChhHHHHHHHHHHHHHhc--------CCCCCHHHH----HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQT--------LSQESLPML----LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTK 120 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~--------L~pe~Lp~f----Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpk 120 (898)
..+-.+..|+-.+|++..- +.++.+++| |.-|..+.+-+....-+.-++++-.+.....+.+.||.+.
T Consensus 510 ~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~ 589 (960)
T KOG1992|consen 510 ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPE 589 (960)
T ss_pred cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhH
Confidence 3566888999999988642 234455554 3344433333333333444455555555555556555555
Q ss_pred HHHHHHH----hhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHH
Q 002638 121 IISHIVK----RLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 121 IL~~Ilr----rLkDp-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE 194 (898)
++..+.+ .-+.| +|..-+-.-+++|.+.....+.+.... ..|..-|-|+|+.+. +.-...---++.-|+-++|
T Consensus 590 ~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 590 LLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333 34454 456677777889999888854322111 234444455556553 3222333357777888898
Q ss_pred hcCCCCchhHHHHHHHHHHHhcCCchhhH---HHHHHHHHHHHhcc-ccCc--ccHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002638 195 CASDPPVVAFQKLCARICKLLSNQNFMAK---ASLLPVVGSLSQVG-AIAP--QSLEPLLQSIHECLGSTDWATRKAAAD 268 (898)
Q Consensus 195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK---~alL~aIgSLA~vG-a~~~--pyld~lLp~L~e~LsddDW~vRKaA~E 268 (898)
.....+.+.+-.|+| .+|.-.--+.+ ++++.++.+++..| ..+. ..+..++..+.....+...+ -...+
T Consensus 669 ~~~~~ip~~~~~l~~---~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D--h~GF~ 743 (960)
T KOG1992|consen 669 HSSGTIPDSYSPLFP---PLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND--HHGFY 743 (960)
T ss_pred hcCCCCchhHHHHHH---HhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--hhHHH
Confidence 764422222222222 22222222222 37788888888877 4444 55667777666666653222 23567
Q ss_pred HHHHHHHhcc-hHHHhhHHHHHH-HHHhhhcCCCh
Q 002638 269 ALSALALHSS-NLVIDGATSTLT-VLEACRFDKIK 301 (898)
Q Consensus 269 aL~sLA~avg-e~L~Py~~~~I~-~LE~~RfDKvK 301 (898)
.|..|....+ ..+.||+..+.. +++..+.-|.+
T Consensus 744 LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~ 778 (960)
T KOG1992|consen 744 LLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTE 778 (960)
T ss_pred HHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcH
Confidence 7888888888 678999999976 44566666665
No 131
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.10 E-value=0.25 Score=55.00 Aligned_cols=130 Identities=19% Similarity=0.210 Sum_probs=80.3
Q ss_pred HHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh-hH-----HHHHHHHHHHHh
Q 002638 163 VGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM-AK-----ASLLPVVGSLSQ 235 (898)
Q Consensus 163 ~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k-aK-----~alL~aIgSLA~ 235 (898)
+..++..++.+| .|.+.....+|..||. + .+-|+.|+|.++..++.+..+ .+ ..++..+.|+..
T Consensus 195 Lq~YF~kvisal~dEs~~~~r~aAl~sLr-------~--dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~ 265 (450)
T COG5095 195 LQMYFDKVISALLDESDEQTRDAALESLR-------N--DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhc
Confidence 444555555555 3445555555655542 2 245888999999888765322 11 123344444443
Q ss_pred ccccC-cccHHHHHHHHHHhhC-----C--C---CHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002638 236 VGAIA-PQSLEPLLQSIHECLG-----S--T---DWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK 301 (898)
Q Consensus 236 vGa~~-~pyld~lLp~L~e~Ls-----d--d---DW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvK 301 (898)
---+| .||+.++||+++.||- + + -.++|+-|++.|..+....+......++++.+-+...-+|..|
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k 342 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK 342 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc
Confidence 22344 8999999999998852 2 2 2669999999999999998866555555555544433344333
No 132
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.08 E-value=0.61 Score=60.59 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 002638 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKL 214 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkL 214 (898)
.-++.+++.+-.|+..- .+. ..+..||+-++..|+++...+-.-|.-||..++|.-+... ..+.+-..+..-
T Consensus 792 ~d~~~a~li~~~la~~r---~f~---~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R 863 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYLAHAR---SFS---QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGR 863 (1692)
T ss_pred ccchhHHHHHHHHHhhh---HHH---HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHh
Confidence 44677777655555444 221 3478899999999999999999999999999999643321 122333344444
Q ss_pred hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002638 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294 (898)
Q Consensus 215 Lks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~ 294 (898)
+.+.+..+|.+++++||.++. ..+.++..+-..|.+...|+.-.+||.|+..|--|....+++-. ...=|.++|-
T Consensus 864 ~~DssasVREAaldLvGrfvl---~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlr- 938 (1692)
T KOG1020|consen 864 LNDSSASVREAALDLVGRFVL---SIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLR- 938 (1692)
T ss_pred hccchhHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHH-
Confidence 556788899999999999974 33445555555666888899999999999999999999985322 2333444443
Q ss_pred hhcCCChhhHHHHHHHH-HHHH
Q 002638 295 CRFDKIKPVRDSMNEAL-QLWK 315 (898)
Q Consensus 295 ~RfDKvKpVRD~A~eAL-elWK 315 (898)
.-.|.-..|.+.+.+.+ .+|=
T Consensus 939 Rv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 939 RVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HhccchhHHHHHHHHHHHHHhc
Confidence 33343333556666554 5664
No 133
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.03 E-value=0.51 Score=56.03 Aligned_cols=130 Identities=21% Similarity=0.256 Sum_probs=89.2
Q ss_pred HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh---hH-----HHHHHHHHHHH
Q 002638 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM---AK-----ASLLPVVGSLS 234 (898)
Q Consensus 163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k---aK-----~alL~aIgSLA 234 (898)
...|++-+.+++...++..-..|..+|+. .+-|+.|+|+|+.++...... .+ ..++..+.||.
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 56788888888866666555555555431 145888999999888654111 11 13444455554
Q ss_pred hcccc-CcccHHHHHHHHHHhhC----------CCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCCh
Q 002638 235 QVGAI-APQSLEPLLQSIHECLG----------STDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIK 301 (898)
Q Consensus 235 ~vGa~-~~pyld~lLp~L~e~Ls----------ddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvK 301 (898)
.--.+ +.+|+-.+||+|+.|+- |+.|.+|..|++.+..|....++.......++++.+...-.|..+
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~ 353 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKK 353 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 32234 48999999999998853 356999999999999999999976666667777777666666544
No 134
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=4.1 Score=50.62 Aligned_cols=212 Identities=12% Similarity=0.130 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHcC-CCh-h--HHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhhc-----CCCChhhHHHHHHHHHHHH
Q 002638 39 VEMKQKILTSLSKL-ADR-D--THQIAIEDLEKTIQT--LSQESLPMLLNCLYESS-----NDPKPAVKKESVRLLALVC 107 (898)
Q Consensus 39 ~eLK~rll~~L~KL-sDr-D--T~k~Aa~eLD~Ia~~--L~pe~Lp~fLs~L~es~-----~s~k~~vRKeAIlLLG~IA 107 (898)
.|+|..+..++.+| .|. | ++=.+++.|..++.. +.++.|-+|++-+.... .-..--.|-..+.+|+.+.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 46677777666666 444 2 666788888888875 45666767766554432 1123446788999999999
Q ss_pred HHhchhchhhHHHHHHHHHHhh--cCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC-CHhHH--
Q 002638 108 ELHSELTSTHVTKIISHIVKRL--KDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQ-- 182 (898)
Q Consensus 108 Eg~gd~I~PhLpkIL~~IlrrL--kDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq-nk~VQ-- 182 (898)
+.-++.|.||..+|++++-..= ...++.+|.|...++..|+.-+-... ...++ |+-|+++.-.+. .|..+
T Consensus 601 ~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS----~~~~~-fL~pVIel~~D~~sP~hv~L 675 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS----FEFYP-FLYPVIELSTDPSSPEHVYL 675 (978)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC----ccchH-HHHHHHHHhcCCCCCceeeh
Confidence 9999999999999999876554 44578999999999999999983222 13344 666777766443 34333
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc--cccCcccHHHHHHHHHHhhCC
Q 002638 183 -SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV--GAIAPQSLEPLLQSIHECLGS 257 (898)
Q Consensus 183 -egAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~v--Ga~~~pyld~lLp~L~e~Lsd 257 (898)
+-+..-...++++.+... +-|-.|+|.|..++..-.... ..++..|.|-+-. +.....|...+...+-+.+.+
T Consensus 676 ~EDgmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~d 751 (978)
T KOG1993|consen 676 LEDGMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDD 751 (978)
T ss_pred hhhHHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 446666677777764443 334467777777776432222 2566777776532 233456666666666666655
No 135
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.92 E-value=1.9 Score=48.26 Aligned_cols=191 Identities=18% Similarity=0.187 Sum_probs=107.0
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~ 156 (898)
+..+++++.. +.+-....+.+.+|+..+......+. +.++..+.++|+|..+.||.+-...+|.+.. ....
T Consensus 24 ~~~l~~~~~K---E~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~---~~~~ 94 (339)
T PF12074_consen 24 VQGLSPLLSK---ESNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALW---ESPN 94 (339)
T ss_pred HHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh---hccC
Confidence 4444555542 33455666777777766665533333 6779999999999999999999999998887 1111
Q ss_pred cCCchhHHhhHHHHHHHHh----cCCHhHHH---HHHHHHHHHHHhc-C--------------CCCchhHHHHHHHHHHH
Q 002638 157 ENNGTVVGLFVKPLFEAMM----EQNKGVQS---GAAMCMAKMVECA-S--------------DPPVVAFQKLCARICKL 214 (898)
Q Consensus 157 e~~~~~~~~lL~pL~eaL~----eqnk~VQe---gAasALAkiIE~a-~--------------d~~~~yL~~LlPRLlkL 214 (898)
.........|+++|++.+. .+.+.+|. .+++++..+.... . +.-..+ .+=+|+..-
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~--ll~~kvysk 172 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSF--LLSEKVYSK 172 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcch--hcCHHHHhc
Confidence 1122456667788887773 33445552 2444444311100 0 000011 122343333
Q ss_pred hcC-CchhhHHHHHHHHHHHHh-ccccC-cccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhcchHH
Q 002638 215 LSN-QNFMAKASLLPVVGSLSQ-VGAIA-PQSLEPLLQSIHECLGST--DWATRKAAADALSALALHSSNLV 281 (898)
Q Consensus 215 Lks-~~~kaK~alL~aIgSLA~-vGa~~-~pyld~lLp~L~e~Lsdd--DW~vRKaA~EaL~sLA~avge~L 281 (898)
|.+ .... -++.++-+++. ..... ......+-..++-++.+. .|.+|+.|+++|..+....+..+
T Consensus 173 l~~~~d~~---w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l 241 (339)
T PF12074_consen 173 LASEEDLC---WLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELL 241 (339)
T ss_pred cCCHhHHH---HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHH
Confidence 221 1111 33444444432 11111 111345555666777777 89999999999999998888653
No 136
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=11 Score=47.55 Aligned_cols=267 Identities=14% Similarity=0.139 Sum_probs=155.4
Q ss_pred HHHHHHHHHHcC--C--ChhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc
Q 002638 41 MKQKILTSLSKL--A--DRDTHQIAIEDLEKTIQTLS--QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT 114 (898)
Q Consensus 41 LK~rll~~L~KL--s--DrDT~k~Aa~eLD~Ia~~L~--pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I 114 (898)
+-.++++..... + ..+..+.+.+.+..+..-|. |-.|+++|+.|.+...+ +..-.+++.-|..+|+.|...+
T Consensus 505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L 582 (982)
T KOG2022|consen 505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESL 582 (982)
T ss_pred HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhC
Confidence 345555544333 3 67788888888888887663 43589999999988753 3444567888999999999999
Q ss_pred hhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh---c---CCHh------
Q 002638 115 STHVTKIISHIVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM---E---QNKG------ 180 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDp--Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~---e---qnk~------ 180 (898)
.||...+++++...|.-. .+.+|-....+||-+.+.+ + .+....+.-.++.|++..|. . +++.
T Consensus 583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~--pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~ 659 (982)
T KOG2022|consen 583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-K--PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIA 659 (982)
T ss_pred chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-c--HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 999999999988887553 3577888888999888888 3 23333555666667766662 1 1222
Q ss_pred HHHHHHHHHHHHHHhcC-----C------------CCchhHHHHHHHHHHHhcCCchhhH-HHHHHHHHHHHh-----cc
Q 002638 181 VQSGAAMCMAKMVECAS-----D------------PPVVAFQKLCARICKLLSNQNFMAK-ASLLPVVGSLSQ-----VG 237 (898)
Q Consensus 181 VQegAasALAkiIE~a~-----d------------~~~~yL~~LlPRLlkLLks~~~kaK-~alL~aIgSLA~-----vG 237 (898)
.|..+.++|..-..... + .+..++.+++|-+-+++.- + .+ ...++++..+.. ++
T Consensus 660 ~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~--~-~~~s~vve~~C~i~~~~v~~~~ 736 (982)
T KOG2022|consen 660 FQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSM--W-LGLSDVVEASCIIMVKGVRSLL 736 (982)
T ss_pred HHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHH--H-hcchhHHHHHHHHHHhcccccc
Confidence 33445555554432210 0 1112355666666666651 1 11 123333333322 22
Q ss_pred ccC-cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh----------cchHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638 238 AIA-PQSLEPLLQSIHECLGSTDWATRKAAADALSALALH----------SSNLVIDGATSTLTVLEACRFDKIKPVRDS 306 (898)
Q Consensus 238 a~~-~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a----------vge~L~Py~~~~I~~LE~~RfDKvKpVRD~ 306 (898)
..| .|++..+++.+..++...--. +++...+++.+ ++..|.......+.+++.--|-.+. |.
T Consensus 737 ~sF~~p~l~~l~~Fi~r~~~~~~a~----tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~---Di 809 (982)
T KOG2022|consen 737 TSFPEPMLPSLCPFIVRFLTSCLAV----TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQP---DI 809 (982)
T ss_pred ccchhhhHHHHHHHHHHhccchHHH----HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCc---hH
Confidence 335 667777777777765553211 12222221111 1123334455666677755555554 44
Q ss_pred HHHHH----HHHHHhhcCCC
Q 002638 307 MNEAL----QLWKKIAGKVD 322 (898)
Q Consensus 307 A~eAL----elWK~La~~~d 322 (898)
+.+-+ +.||.+|+.-+
T Consensus 810 ~~~~~~~v~~ilkk~P~~~~ 829 (982)
T KOG2022|consen 810 YLQLIGFVRQILKKIPKFLE 829 (982)
T ss_pred HHHHHHHHHHHHHhCcCccc
Confidence 44444 45666665543
No 137
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=94.77 E-value=0.68 Score=50.27 Aligned_cols=169 Identities=14% Similarity=0.211 Sum_probs=121.0
Q ss_pred hhhHHHHHHHHHHHHHHhc-------hh-chhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhH
Q 002638 93 PAVKKESVRLLALVCELHS-------EL-TSTHVTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVV 163 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~g-------d~-I~PhLpkIL~~IlrrLkDp-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~ 163 (898)
|..=|++-.+|+.+++... .. -..++.+|-.+++..|..- ...+=.++..++..+++.+...........-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 6677899999999997652 12 3567888888777776553 4567778888999999999743221122334
Q ss_pred HhhHHHHHHHHhcCCH------hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch--------hhHHHHHHH
Q 002638 164 GLFVKPLFEAMMEQNK------GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF--------MAKASLLPV 229 (898)
Q Consensus 164 ~~lL~pL~eaL~eqnk------~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~--------kaK~alL~a 229 (898)
...|..+++.+..++. +=-+|--.++.+++-..+....+.|+..+.+|+.+.+.+.. -.+.+++++
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 5567777777754411 12256777788888765443337899999999999988754 367789999
Q ss_pred HHHHHh---ccccCcccHHHHHHHHHHhhCCCCHH
Q 002638 230 VGSLSQ---VGAIAPQSLEPLLQSIHECLGSTDWA 261 (898)
Q Consensus 230 IgSLA~---vGa~~~pyld~lLp~L~e~LsddDW~ 261 (898)
+.+|+. .+....+|+...+..-++.+.+++|.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 999974 23567889999998888999999984
No 138
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.76 E-value=8.2 Score=46.78 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=67.9
Q ss_pred HHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHH
Q 002638 48 SLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV 126 (898)
Q Consensus 48 ~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Il 126 (898)
+|.-. ++..+.+.|++-|-++...+|. .-..-+.++++-..+.+..+|+.||+.|-.+|... ..|+++|.-++.
T Consensus 28 il~~~kg~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~----~~~v~kvaDvL~ 102 (556)
T PF05918_consen 28 ILDGVKGSPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN----PEHVSKVADVLV 102 (556)
T ss_dssp HHHGGGS-HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH----HHHHhHHHHHHH
Confidence 44333 6777999999999999998853 54555666666666888999999999998888753 457889999999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHH
Q 002638 127 KRLKDSDSGMKEACRDSIGSLSKL 150 (898)
Q Consensus 127 rrLkDpDs~VR~Ac~~tLG~LA~~ 150 (898)
+.|.--++..+.++-++|..|...
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhc
Confidence 999988888888888877544433
No 139
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=6.2 Score=44.91 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHc--C------CChhHHHHHHHHHHHHHhcCCC-CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH
Q 002638 37 AMVEMKQKILTSLSK--L------ADRDTHQIAIEDLEKTIQTLSQ-ESLPMLLNCLYESSNDPKPAVKKESVRLLALVC 107 (898)
Q Consensus 37 ~~~eLK~rll~~L~K--L------sDrDT~k~Aa~eLD~Ia~~L~p-e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA 107 (898)
-+|+|.++....=.. + .-|++...-+..|+++.+...+ ...++|++-|+--.-.++..++--++.-+|.+.
T Consensus 31 dlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcil 110 (524)
T KOG4413|consen 31 DLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCIL 110 (524)
T ss_pred ccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHH
Confidence 347777766543222 1 2355666778899999987644 458999999998887888889999999999999
Q ss_pred HHhchh-chhhH----HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002638 108 ELHSEL-TSTHV----TKIISHIVKRLKDSDSGMKEACRDSIGSLSKL 150 (898)
Q Consensus 108 Eg~gd~-I~PhL----pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~ 150 (898)
|-|... +...+ ..|++.|+..+...|-.|-.|+.++|.+++..
T Consensus 111 EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 111 EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 998843 44433 47888999999999999999999999998854
No 140
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=1.6 Score=52.08 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=102.5
Q ss_pred hhHhHHHHHHHHHHHHHcC----CChh-----------HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHH
Q 002638 34 SHLAMVEMKQKILTSLSKL----ADRD-----------THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKK 97 (898)
Q Consensus 34 ~~~~~~eLK~rll~~L~KL----sDrD-----------T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRK 97 (898)
+........+|++.+|-.- +|++ .|--..+.|.-++--++.+. +.....-+.+ ++..|..=+
T Consensus 330 ~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~E 407 (559)
T KOG2081|consen 330 ALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVE 407 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHH
Confidence 3445566777888877332 2222 33334444444444455433 4444444443 466799999
Q ss_pred HHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH--h
Q 002638 98 ESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--M 175 (898)
Q Consensus 98 eAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL--~ 175 (898)
+++..|.+++.-....-.+-+|+|+..|.+. +-...||.+++-.+|.|..|+- .+++++.|+.+.+ +
T Consensus 408 AaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew~~---------~~p~~le~v~~~~~~~ 476 (559)
T KOG2081|consen 408 AALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEWVE---------QHPELLEPVLRYIRQG 476 (559)
T ss_pred HHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHHHH---------hCcHHHHHHHHHHHHH
Confidence 9999998888654443344455555444332 1224599999999999999993 3455666666665 2
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhc
Q 002638 176 EQNKGVQSGAAMCMAKMVECASDPP---VVAFQKLCARICKLLS 216 (898)
Q Consensus 176 eqnk~VQegAasALAkiIE~a~d~~---~~yL~~LlPRLlkLLk 216 (898)
-+.+..+.+|+.|+..+|..+.... .+++..|+--+...+-
T Consensus 477 ~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~ 520 (559)
T KOG2081|consen 477 LQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQI 520 (559)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 2344489999999999998764332 3444444444443333
No 141
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=94.67 E-value=0.13 Score=49.33 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC---CCc---------
Q 002638 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD---PPV--------- 201 (898)
Q Consensus 134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d---~~~--------- 201 (898)
+.||...+.+++.++.+.. + +.|+.+++.+++.+.. ++.........|..+.|+..+ ...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~---P----~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~ 73 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDW---P----QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELK 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHT---T----TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHC---h----hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHH
Confidence 4688888999999988883 1 4599999999999876 577777889999999988632 111
Q ss_pred ----hhHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638 202 ----VAFQKLCARICKLLSNQN----FMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (898)
Q Consensus 202 ----~yL~~LlPRLlkLLks~~----~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL 270 (898)
..++.++.-+.++|.... ......+|.|+++.+.-. ..+.. ..+++.++++|.+++ +|.+|+|||
T Consensus 74 ~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 74 DALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 113444555555555432 455668889999986522 11111 137888888886655 489999987
No 142
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.66 E-value=0.77 Score=57.91 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH
Q 002638 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDP-PVVAFQKLCARIC 212 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~d~-~~~yL~~LlPRLl 212 (898)
.-|..|+.+|+.|+..+ +-+. ..-.-..++-..++.|.+ +.+-...=.|.||.++-|+-... ....=..--.+|+
T Consensus 572 EqrtmaAFVLAviv~nf-~lGQ--~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNF-KLGQ--KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred HHHHHHHHHHHHHHccc-chhH--HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 55666666666666664 2110 001122344445555544 34555566888888888864221 1122223567889
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcc-ccCc----------------ccHHHHHH----HHHHhhCCCCHHHHHHHHHHHH
Q 002638 213 KLLSNQNFMAKASLLPVVGSLSQVG-AIAP----------------QSLEPLLQ----SIHECLGSTDWATRKAAADALS 271 (898)
Q Consensus 213 kLLks~~~kaK~alL~aIgSLA~vG-a~~~----------------pyld~lLp----~L~e~LsddDW~vRKaA~EaL~ 271 (898)
.+|.++...+|++++-++|+++..+ ..|. .-++.+++ .|...+++...-+|+.++.+|.
T Consensus 649 ~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 649 LLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999999999999998643 1111 12333333 5666677778888888888777
Q ss_pred HHHHhcch
Q 002638 272 ALALHSSN 279 (898)
Q Consensus 272 sLA~avge 279 (898)
.++...-.
T Consensus 729 ~~~~g~~~ 736 (1387)
T KOG1517|consen 729 HFVVGYVS 736 (1387)
T ss_pred HHHHhhHH
Confidence 66554443
No 143
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.43 E-value=1.3 Score=52.12 Aligned_cols=271 Identities=16% Similarity=0.139 Sum_probs=163.7
Q ss_pred CcchhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHhhhcCCCChhhHHHHHHHH
Q 002638 29 SSSLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-----LPMLLNCLYESSNDPKPAVKKESVRLL 103 (898)
Q Consensus 29 ~~~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-----Lp~fLs~L~es~~s~k~~vRKeAIlLL 103 (898)
+-+.+..-...++-.-++.+|..=....+-.+.+++|..++++-+=++ +--|..+|...+.+.++.+|-.++.++
T Consensus 95 pf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~ 174 (728)
T KOG4535|consen 95 PFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLL 174 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Confidence 445555566778888888888766666788888999999998654333 334456666667888999999999999
Q ss_pred HHHHHHhchh--c--------------hhhHHHHHHHHHHhhcCCC----------------------------------
Q 002638 104 ALVCELHSEL--T--------------STHVTKIISHIVKRLKDSD---------------------------------- 133 (898)
Q Consensus 104 G~IAEg~gd~--I--------------~PhLpkIL~~IlrrLkDpD---------------------------------- 133 (898)
|+++..|.-. + .||+.. +---+.|.|.+
T Consensus 175 ~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~--~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s 252 (728)
T KOG4535|consen 175 GAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSP--PDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDS 252 (728)
T ss_pred HHHHhcCCCCHHHHHHhcCCCccccccCCCCCC--hHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccc
Confidence 9998876421 0 011100 01112222221
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002638 134 ----------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (898)
Q Consensus 134 ----------------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~ 197 (898)
+.||--|..++..+++++ +. -..++..+...+...+.+..+.+|..++.||.++.....
T Consensus 253 ~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~---~~--~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv 327 (728)
T KOG4535|consen 253 CSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF---SM--TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLI 327 (728)
T ss_pred cchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 568888999999999988 21 123455666677777788999999999999999987752
Q ss_pred --CCCc---hhHHHHHHHHHHHh--------cCCchhhHHHHHHHHHHHHhcc-ccCcccHH-HHHHHHHHhhCCCCHHH
Q 002638 198 --DPPV---VAFQKLCARICKLL--------SNQNFMAKASLLPVVGSLSQVG-AIAPQSLE-PLLQSIHECLGSTDWAT 262 (898)
Q Consensus 198 --d~~~---~yL~~LlPRLlkLL--------ks~~~kaK~alL~aIgSLA~vG-a~~~pyld-~lLp~L~e~LsddDW~v 262 (898)
+.+. .-+..=+-+++.+. ++.++-.+.++-+++.++.... ..++.--. ..+..+..|-.+++.-+
T Consensus 328 ~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv 407 (728)
T KOG4535|consen 328 QQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLV 407 (728)
T ss_pred hhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHH
Confidence 2111 11222223333332 2223333443333333332111 12222122 23445566666666678
Q ss_pred HHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638 263 RKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDS 306 (898)
Q Consensus 263 RKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~ 306 (898)
|.+|..+++.+..+-+ -.-.-|...|-+.+....+||.--+|+-
T Consensus 408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~K 452 (728)
T KOG4535|consen 408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAK 452 (728)
T ss_pred HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHH
Confidence 8888888777666666 4444566777777777777765545543
No 144
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.69 Score=51.76 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=101.3
Q ss_pred HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCccc
Q 002638 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQS 243 (898)
Q Consensus 164 ~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~py 243 (898)
..++..+...|....-.|-.+||+|++.+.+...+.+..-++.++-.|+.=-...+--++..+..++.+++.. ..
T Consensus 128 ~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~--vt--- 202 (334)
T KOG2933|consen 128 HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH--VT--- 202 (334)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--cC---
Confidence 3344444444444444577889999999999765543333333332222211222333567777777777531 11
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638 244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 244 ld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La 318 (898)
-..+++.|+.++.+....+|..+|-|+......+| ....+|....+..+...-.|+...+|+++.-++.-.+.+-
T Consensus 203 p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~ 279 (334)
T KOG2933|consen 203 PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL 279 (334)
T ss_pred hHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence 12678888888999999999999999988777776 6777888899999999999999989988776666655544
No 145
>PF05536 Neurochondrin: Neurochondrin
Probab=94.40 E-value=7.8 Score=46.82 Aligned_cols=194 Identities=12% Similarity=0.096 Sum_probs=129.1
Q ss_pred HHHHHHhhhcCCCC-hhhHHHHHHHHHHHHHHhchh-c--hhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhc
Q 002638 79 MLLNCLYESSNDPK-PAVKKESVRLLALVCELHSEL-T--STHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLN 153 (898)
Q Consensus 79 ~fLs~L~es~~s~k-~~vRKeAIlLLG~IAEg~gd~-I--~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik 153 (898)
.||.-|+.+...+. .......-+++..++..|.+. + .|.+-.-+|.++..+...+. .+-.=|..+|..++ ..
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia---s~ 129 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA---SS 129 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH---cC
Confidence 46666665543322 233444455555666666533 3 57788889999999988776 55555555555555 22
Q ss_pred ccccCCchhH--HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCC-C---CchhHHHHHHHHHHHhcCCchhhHHHHH
Q 002638 154 GKEENNGTVV--GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASD-P---PVVAFQKLCARICKLLSNQNFMAKASLL 227 (898)
Q Consensus 154 ~~~e~~~~~~--~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d-~---~~~yL~~LlPRLlkLLks~~~kaK~alL 227 (898)
+. +...+ ...++.|++.+.. .+..++-|...|..++-.... . ....+..+++++...+...+-..|-.++
T Consensus 130 ~~---G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell 205 (543)
T PF05536_consen 130 PE---GAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELL 205 (543)
T ss_pred cH---hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 21 11211 2367788888865 555667777777777765432 1 1235778999999999988777788889
Q ss_pred HHHHHHHh-cc------ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcch
Q 002638 228 PVVGSLSQ-VG------AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSN 279 (898)
Q Consensus 228 ~aIgSLA~-vG------a~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge 279 (898)
..++.+.. .. ...+.....+...|..+|.+ ....-|..|+...+.|..+.|.
T Consensus 206 ~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 206 EFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 99999853 21 22355677777788888877 4577899999999999999994
No 146
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.39 E-value=1.7 Score=53.29 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=93.6
Q ss_pred chhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki 192 (898)
...|-++|+|.|..-++-+++ .++-...+-+-.|.+.+- .++....+|+-|+.++.+....+|+.+...+..+
T Consensus 343 ~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~------~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv 416 (700)
T KOG2137|consen 343 QNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP------PEEVKEKILPLLYRSLEDSDVQIQELALQILPTV 416 (700)
T ss_pred hhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC------hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence 344566777777777765544 333333444444444441 2356778999999999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638 193 VECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADA 269 (898)
Q Consensus 193 IE~a~d~~~~yL~~LlPRLlkLL-ks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea 269 (898)
.|.++.. -.=+.|+|+|-.+. ++.+..+|..+|.|++.++..-+ ...+-..+.+++.|....|..+--.-..+
T Consensus 417 ~e~iD~~--~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD--~~~v~d~~lpi~~~~~~~dp~iv~~~~~i 490 (700)
T KOG2137|consen 417 AESIDVP--FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD--KAAVLDELLPILKCIKTRDPAIVMGFLRI 490 (700)
T ss_pred HHhccHH--HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9876421 23446888887764 44567788899999999884221 11222445556666666665553333333
No 147
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.28 E-value=5.1 Score=44.25 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhchhchh--hHHHHHHHHH-HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 99 SVRLLALVCELHSELTST--HVTKIISHIV-KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 99 AIlLLG~IAEg~gd~I~P--hLpkIL~~Il-rrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
|+.++..+-+-....+.| .|..|+..|+ +.++.+++.||..+..++|-++-.-. +.-..+++.++..+.
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--------~~a~~~l~l~~~~~~ 74 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--------ELAKEHLPLFLQALQ 74 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHHH
Confidence 444555555555544544 5668886555 89999999999999999997775541 234556777777775
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCc---------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002638 176 EQNKGVQSGAAMCMAKMVECASDPPV---------VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG 237 (898)
Q Consensus 176 eqnk~VQegAasALAkiIE~a~d~~~---------~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG 237 (898)
.....++..|+.|+--++---+.... ..-..++.-+.+.|.+.+..++..+...+.-+.-.|
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 55888998888887666643221111 123467778888888888888888888888876544
No 148
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.16 E-value=1.6 Score=49.14 Aligned_cols=212 Identities=14% Similarity=0.168 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh
Q 002638 39 VEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL 113 (898)
Q Consensus 39 ~eLK~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~ 113 (898)
..+=+|+-+||+-. ... .++-|++.-+.|-+.++++. ++.|++-|+..+......+|...+.++....---+..
T Consensus 53 ~~v~krLaqCL~P~LPsG-VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~ 131 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSG-VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPA 131 (307)
T ss_pred HHHHHHHHHhcCCCCChH-HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHH
Confidence 34567888999765 434 88999999999988887543 7778888887777777889999999998887766778
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI 193 (898)
+.|.++-++..++.+|.|..+.+-+-+...+-.+...+ + -..|...|+.++. .++.+-.+|..-|.+-.
T Consensus 132 L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v---~-------~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 132 LRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV---G-------DKYFWQCLWLCII-TSPSRRLGALNYLLRRL 200 (307)
T ss_pred HHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc---C-------hhHHHHHHHHHHh-cCcchhHHHHHHHHHhC
Confidence 89999999999999999999999999999999998887 2 1246677777775 44555555544443333
Q ss_pred HhcC------------CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-c-----cCcccHHHHHHHHHHhh
Q 002638 194 ECAS------------DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-A-----IAPQSLEPLLQSIHECL 255 (898)
Q Consensus 194 E~a~------------d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a-----~~~pyld~lLp~L~e~L 255 (898)
-... ....+--.-|+.-|+..|.+.+.-++-..|+.+-+-.... . ........++......+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv~a~l~~~ 280 (307)
T PF04118_consen 201 PKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKELLVMAALKVV 280 (307)
T ss_pred CcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHHHHHHHHHHH
Confidence 2111 0001113347788888889888888888899887766443 2 22444555555555544
Q ss_pred CCCCHHH
Q 002638 256 GSTDWAT 262 (898)
Q Consensus 256 sddDW~v 262 (898)
--.|+.+
T Consensus 281 lrrDmSL 287 (307)
T PF04118_consen 281 LRRDMSL 287 (307)
T ss_pred hHhhhhH
Confidence 4444443
No 149
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.10 E-value=5.8 Score=47.77 Aligned_cols=156 Identities=11% Similarity=0.096 Sum_probs=86.2
Q ss_pred CChHHHHHHHHHHHHHHHHHhccc------ccCCchhHHhhHHHHHHHH----hcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002638 132 SDSGMKEACRDSIGSLSKLYLNGK------EENNGTVVGLFVKPLFEAM----MEQNKGVQSGAAMCMAKMVECASDPPV 201 (898)
Q Consensus 132 pDs~VR~Ac~~tLG~LA~~lik~~------~e~~~~~~~~lL~pL~eaL----~eqnk~VQegAasALAkiIE~a~d~~~ 201 (898)
..+.+|.+|.-++|.|+..+.... ..........+++.|...| ...+......+.-||..+- .
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----~--- 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----H--- 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----C---
Confidence 457899999999999999986541 1112233444555555554 3445555566666665542 1
Q ss_pred hhHHHHHHHHHHHhcCC---chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHh
Q 002638 202 VAFQKLCARICKLLSNQ---NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS--TDWATRKAAADALSALALH 276 (898)
Q Consensus 202 ~yL~~LlPRLlkLLks~---~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsd--dDW~vRKaA~EaL~sLA~a 276 (898)
+..++.|.+++... ...+|.+++.++..++ ..+-+.+.+.|..++.+ ++.++|.+|..+|.. .
T Consensus 520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~------~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~ 587 (618)
T PF01347_consen 520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA------KHCPEKVREILLPIFMNTTEDPEVRIAAYLILMR---C 587 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG------GT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T
T ss_pred ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHh------hcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHh---c
Confidence 23566677777665 3334555555554432 22334566666776655 578899998766542 2
Q ss_pred cchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638 277 SSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 277 vge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
- |-...+-.+......|+...|+.++..+|
T Consensus 588 ~-----P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 588 N-----PSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp --------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred C-----CCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 2 23333444555667899998988876655
No 150
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.04 E-value=1.9 Score=47.47 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=95.1
Q ss_pred CchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC---c---hhHHHHHHHHHHHhc--------CCchhhHH
Q 002638 159 NGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP---V---VAFQKLCARICKLLS--------NQNFMAKA 224 (898)
Q Consensus 159 ~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~---~---~yL~~LlPRLlkLLk--------s~~~kaK~ 224 (898)
.+++|+.++|+++..+++..+.+..-+|.||..+++..+... . ++.+-+-+-|.++|- ......=.
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 457899999999999999999999999999999999875443 1 233334444555554 33444445
Q ss_pred HHHHHHHHHHhcc--ccCcccHHHHHHH----HHHhhC-CC---CHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHh
Q 002638 225 SLLPVVGSLSQVG--AIAPQSLEPLLQS----IHECLG-ST---DWATRKAAADALSALALHSSNLVIDGATSTLTVLEA 294 (898)
Q Consensus 225 alL~aIgSLA~vG--a~~~pyld~lLp~----L~e~Ls-dd---DW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~ 294 (898)
.++.|+-+++.+- ....++...+-.. ++.-+. .. ...+|...++.|..+...+|-...-|+.+++.+|.+
T Consensus 193 ~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 193 AAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 7788888886542 2222233333332 333222 12 488999999999999999998777899999988765
No 151
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=3.6 Score=52.86 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=70.6
Q ss_pred CChhHHHHHHHHHHHHHhc---CCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhh
Q 002638 53 ADRDTHQIAIEDLEKTIQT---LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL 129 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~---L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrL 129 (898)
+|.+.++.|.-.|-++.-- +-...++.|+..+. .++.|.+|--++.++|-++=.++..+.|+= +++.++|
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces~l~llftime---ksp~p~IRsN~VvalgDlav~fpnlie~~T----~~Ly~rL 1007 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCESHLPLLFTIME---KSPSPRIRSNLVVALGDLAVRFPNLIEPWT----EHLYRRL 1007 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cCCCceeeecchheccchhhhcccccchhh----HHHHHHh
Confidence 7888999999999998751 11223555444443 377899999999999999999988887764 4578899
Q ss_pred cCCChHHHHHHHHHHHHHHH
Q 002638 130 KDSDSGMKEACRDSIGSLSK 149 (898)
Q Consensus 130 kDpDs~VR~Ac~~tLG~LA~ 149 (898)
+|+++.||..|.-++.-|.-
T Consensus 1008 ~D~~~~vRkta~lvlshLIL 1027 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLIL 1027 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHH
Confidence 99999999999998876653
No 152
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.95 E-value=2.3 Score=54.84 Aligned_cols=177 Identities=13% Similarity=0.099 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHH-HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh
Q 002638 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQ-SGAAMCMAKMVECASDPPVVAFQKLCARICKLL 215 (898)
Q Consensus 137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQ-egAasALAkiIE~a~d~~~~yL~~LlPRLlkLL 215 (898)
|.-|--++-.|+..+...-++.-...|.-++.+|-+....++..+- ...+.+++...+. ...+ +-.+.|+++.++
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s---~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHS---FLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhh---hhhh-hhhhhhHHHHhc
Confidence 6666667777777763211111112233334444333333322211 1233333333322 1222 556889999999
Q ss_pred cCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHH
Q 002638 216 SNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVL 292 (898)
Q Consensus 216 ks~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~L 292 (898)
.+.+.-+|-++..||+.++..+ +.....++.++ -.+.+-+.-.|+..++++..+..... -.+.||..=+|..|
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~----~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pl 901 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFL----PLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPL 901 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhh
Confidence 9999999999999999997644 33332333333 34455555677777777777776666 67888988889999
Q ss_pred HhhhcCCChhhHHHHHHHHHHHHHhhcCC
Q 002638 293 EACRFDKIKPVRDSMNEALQLWKKIAGKV 321 (898)
Q Consensus 293 E~~RfDKvKpVRD~A~eALelWK~La~~~ 321 (898)
..+.-|.++.||+++.+++-...-+.+..
T Consensus 902 lr~msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 902 LRRMSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred hcccccchHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999988888766666553
No 153
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=93.89 E-value=9.8 Score=47.24 Aligned_cols=216 Identities=16% Similarity=0.137 Sum_probs=130.3
Q ss_pred HHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-hchhchhhHHHH
Q 002638 44 KILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-HSELTSTHVTKI 121 (898)
Q Consensus 44 rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg-~gd~I~PhLpkI 121 (898)
|.+.+++.- .|.++.++|++-+.+|-. +|+....+...+.... .+..+|--|+..|.-..+. +++.-.-.+..|
T Consensus 7 qav~a~ndp~vdsa~KqqA~~y~~qiKs--Sp~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 7 QAVNAVNDPRVDSATKQQAIEYLNQIKS--SPNAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred HHHHhhCCCcccHHHHHHHHHHHHhhcC--CccHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 444444444 789999999999999988 6777888888876544 5788999999988777654 444433334444
Q ss_pred HHHHHH----h-hcCC----ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--C--HhHHHHHHHH
Q 002638 122 ISHIVK----R-LKDS----DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--N--KGVQSGAAMC 188 (898)
Q Consensus 122 L~~Ilr----r-LkDp----Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--n--k~VQegAasA 188 (898)
--.|.. . |.+. -+-|++.+..+++.|.-..-- ..|+.|+.-|+..+.-. . -..---.++|
T Consensus 83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-------~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-------DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 333333 2 3333 358999999999988766521 33776666665555211 1 0011112222
Q ss_pred HHHHHHh-------------------cCCCCchhHHHHHHHHHHHh---cCC-chhhHHHHHHHHHHHHh-ccccCcccH
Q 002638 189 MAKMVEC-------------------ASDPPVVAFQKLCARICKLL---SNQ-NFMAKASLLPVVGSLSQ-VGAIAPQSL 244 (898)
Q Consensus 189 LAkiIE~-------------------a~d~~~~yL~~LlPRLlkLL---ks~-~~kaK~alL~aIgSLA~-vGa~~~pyl 244 (898)
+..=+-+ +++.+ +++|+.--..+| ++- ++..-+.+|+|+|+++. +. +....=
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~nd---ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWId-InLIaN 231 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDND---IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWID-INLIAN 231 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhh---HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhh-hhhhhc
Confidence 2211111 12222 333433333333 333 56667789999999964 11 111113
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 245 EPLLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 245 d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
+.+|+-|.+++.. -.+|.+||+|+-+|..-
T Consensus 232 d~f~nLLy~fl~i--eelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 232 DYFLNLLYKFLNI--EELRIAACNCILAIVSK 261 (980)
T ss_pred hhHHHHHHHHHhH--HHHHHHHHHHHHHHHhc
Confidence 5677888888874 67999999999887653
No 154
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=2.7 Score=47.89 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=116.5
Q ss_pred HHHHHHcC-CChhHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh---
Q 002638 45 ILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQ-------ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL--- 113 (898)
Q Consensus 45 ll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~p-------e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~--- 113 (898)
....++.. .|-+.+.-|++.|+-++++++. ..+.+++. ..++.++.+|+.|...+|.++.--+..
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 45555655 5888999999999999998852 12444444 455778999999999999999875533
Q ss_pred ch--hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh-----HHHHHHHHhc--CCHhHHHH
Q 002638 114 TS--THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF-----VKPLFEAMME--QNKGVQSG 184 (898)
Q Consensus 114 I~--PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l-----L~pL~eaL~e--qnk~VQeg 184 (898)
+. -.|.+++..+. .|.+-.+|..+..+|+.|.++- .++ ...| ..-|..+|.. .++..|.-
T Consensus 162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~-~~g-------~~~fl~~~G~~~L~~vl~~~~~~~~lkrK 230 (342)
T KOG2160|consen 162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN-KPG-------QDEFLKLNGYQVLRDVLQSNNTSVKLKRK 230 (342)
T ss_pred HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC-cHH-------HHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence 21 24555555443 4555588899999999988887 322 1222 3567778866 56778888
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHH
Q 002638 185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLS 234 (898)
Q Consensus 185 AasALAkiIE~a~d~~~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA 234 (898)
|+.-++.+++.........-..+.++....+.. .++.++.+++.++.++.
T Consensus 231 ~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 231 ALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 999999999875221112223345555555443 46667777777777765
No 155
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.68 E-value=10 Score=45.50 Aligned_cols=219 Identities=18% Similarity=0.149 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHH
Q 002638 59 QIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKE 138 (898)
Q Consensus 59 k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~ 138 (898)
...+..|-++++.++.++|..++..+.. .. +..|+.-+-+|..+.. .+.+. +|...++..+-.- .
T Consensus 310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT------~~a~~----~i~~~i~~~~~~~-~ 374 (574)
T smart00638 310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGT------PPALK----FIKQWIKNKKITP-L 374 (574)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCC------HHHHH----HHHHHHHcCCCCH-H
Confidence 3345566777777777677777776653 21 4455555555433322 12222 2333333332111 1
Q ss_pred HHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHh-cCCCC-------chhHHH
Q 002638 139 ACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVEC-ASDPP-------VVAFQK 206 (898)
Q Consensus 139 Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e----qnk~VQegAasALAkiIE~-a~d~~-------~~yL~~ 206 (898)
-+...+..+...+..+ -.+++.-|++.+.. +.+.+..+|..+++.++.. +.+.. ..|++.
T Consensus 375 ea~~~~~~~~~~~~~P--------t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~ 446 (574)
T smart00638 375 EAAQLLAVLPHTARYP--------TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKY 446 (574)
T ss_pred HHHHHHHHHHHhhhcC--------CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 2444555666665333 24577777777743 3566778889999988863 32221 234444
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002638 207 LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGAT 286 (898)
Q Consensus 207 LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~ 286 (898)
|...|....+..+...+...|.+||= +| .+.-+..+.|.+. .-......+|.+|+.+|..++...++.+.+.+-
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN---~g--~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~ 520 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGN---AG--HPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLL 520 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhc---cC--ChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 44444444444444434444555443 22 1222223333332 112345789999999999999888876665433
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHH
Q 002638 287 STLTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 287 ~~I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
++ +. ..+...+||=+|.-+|
T Consensus 521 ~i---~~--n~~e~~EvRiaA~~~l 540 (574)
T smart00638 521 PI---YL--NRAEPPEVRMAAVLVL 540 (574)
T ss_pred HH---Hc--CCCCChHHHHHHHHHH
Confidence 33 22 1223444776654443
No 156
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.67 E-value=1.2 Score=50.47 Aligned_cols=77 Identities=10% Similarity=0.236 Sum_probs=58.2
Q ss_pred hchhhHHHHHHHHHHhhc----------CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC--Hh
Q 002638 113 LTSTHVTKIISHIVKRLK----------DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN--KG 180 (898)
Q Consensus 113 ~I~PhLpkIL~~IlrrLk----------DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn--k~ 180 (898)
.+.|||..++|.++.+|- +..-.+|+-++..++.++..+-... ...-+-++.-|..+|.++. ..
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y----~~l~~ri~~tl~k~l~d~~~~~~ 326 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY----NTLQPRITRTLLKALLDPKKPLT 326 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC----CcHHHHHHHHHHHHHcCCCCCcc
Confidence 379999999999998872 2334899999999999999993321 2456667778888886653 34
Q ss_pred HHHHHHHHHHHHH
Q 002638 181 VQSGAAMCMAKMV 193 (898)
Q Consensus 181 VQegAasALAkiI 193 (898)
.+.||..+|.++-
T Consensus 327 ~~YGAi~GL~~lG 339 (343)
T cd08050 327 THYGAIVGLSALG 339 (343)
T ss_pred hhhHHHHHHHHhC
Confidence 5789999998874
No 157
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.82 Score=52.64 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=109.0
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002638 80 LLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159 (898)
Q Consensus 80 fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~ 159 (898)
.|.-|+..+.+.+..+|+.|+.-|..+...|+..+..|+-.+++-+...+.|-+..||++....+-.+...+.. +..
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~---e~~ 135 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACK---EDQ 135 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcch---hhh
Confidence 35666666778899999999999999999999999999999999999999999999999999988877777733 223
Q ss_pred chhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC
Q 002638 160 GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ 218 (898)
Q Consensus 160 ~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~ 218 (898)
+.++..+++=+.-+|..-.+.+|+-++.-|.-+++..++....+.-.+++.+..+++..
T Consensus 136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 46678888888888888899999999999999999876654444434555555555433
No 158
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=1.4 Score=54.05 Aligned_cols=265 Identities=16% Similarity=0.176 Sum_probs=134.3
Q ss_pred HHHHHHHHHHcC---CChhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-c
Q 002638 41 MKQKILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-T 114 (898)
Q Consensus 41 LK~rll~~L~KL---sDrDT~k~Aa~eLD~Ia~~L~pe~--Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I 114 (898)
+...+...|.+. .+.-+++.|+-.+.++-. ++++. =..|+..|.+...+.+|.|=-.|+.+|..|.+.+.+. .
T Consensus 118 i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 118 ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 333444444444 233355666555555543 22222 2344555555555677777777888888887777642 2
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE 194 (898)
....+.++-.++.+|..-+ -..-+..+..++.+..++. .-...++..+...|...|..|+.+|.-.+-..+.
T Consensus 197 ~~l~~~~~~~lL~al~ec~---EW~qi~IL~~l~~y~p~d~-----~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECT---EWGQIFILDCLAEYVPKDS-----REAEDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred ccccHHHHHHHHHHHHHhh---hhhHHHHHHHHHhcCCCCc-----hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 2222233333333332221 2222333444444442221 1123344444444445555555555555544444
Q ss_pred hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-------------------------------ccCccc
Q 002638 195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-------------------------------AIAPQS 243 (898)
Q Consensus 195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-------------------------------a~~~py 243 (898)
...+.-..++.++-|.|+.++..+. -..-.+|.=|+-+.... -.....
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n 347 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN 347 (734)
T ss_pred HHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH
Confidence 4333222344455555555555443 11212222222221110 011234
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcCCCC
Q 002638 244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGKVDV 323 (898)
Q Consensus 244 ld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~~d~ 323 (898)
+..++.-|.++.++-|-+.=+.|+.|||.+|.-..+. ..||..|...-.-|+. -++.+++...+.+...|..
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~---yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVD---YVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhccc---ceeeehhHHHHhhhhcCCC
Confidence 5567777778888888888888999999999988764 6777766544434444 2333466666666666544
No 159
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=2.3 Score=52.46 Aligned_cols=202 Identities=14% Similarity=0.160 Sum_probs=132.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~ 156 (898)
..+++.+|..-..+..-.+=-++.+++-.+....+..+.| -++.+.-.|.-|.+.+|.++..+|-.+|.....
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~--- 315 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ--- 315 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc---
Confidence 4566666665554444455666777776666666666666 567777778889999999999999999988732
Q ss_pred cCCchhHHhhHHH-HHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638 157 ENNGTVVGLFVKP-LFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 157 e~~~~~~~~lL~p-L~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~ 235 (898)
....+.+ |-.++.+.|+.+-.=|...|-|-.- + .-.+.|+-.+.....+-+-.-|-..+++|.++..
T Consensus 316 ------~v~~cN~elE~lItd~NrsIat~AITtLLKTG~---e---~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~ 383 (865)
T KOG1078|consen 316 ------AVTVCNLDLESLITDSNRSIATLAITTLLKTGT---E---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCL 383 (865)
T ss_pred ------cccccchhHHhhhcccccchhHHHHHHHHHhcc---h---hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHh
Confidence 1223322 3333466777665444444333321 1 1244555555555554332233456777777743
Q ss_pred ccccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCC
Q 002638 236 VGAIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKI 300 (898)
Q Consensus 236 vGa~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKv 300 (898)
.|+.--..+|..|.+.|.+ .-..-+++..|++..++...++.=.+-+..+.+++|.|.|..+
T Consensus 384 ---~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i 446 (865)
T KOG1078|consen 384 ---KFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQI 446 (865)
T ss_pred ---hccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHH
Confidence 4555556677788887766 3577899999999999998886666677888888898988855
No 160
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=6.7 Score=44.79 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHHHHHHhchhchh--hHHHHHHH-HHHhhcCC--ChHHHHHHHHHHHHHHHHHhcccccCCchh-HHhh
Q 002638 93 PAVKKESVRLLALVCELHSELTST--HVTKIISH-IVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTV-VGLF 166 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~gd~I~P--hLpkIL~~-IlrrLkDp--Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~-~~~l 166 (898)
...|+....++...-+...+.+.+ ....++.. ....+.++ +..=+..|.+-|--+++.+ +.. ... --..
T Consensus 51 ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~i-DnA----ndl~~~gg 125 (342)
T KOG2160|consen 51 KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDI-DNA----NDLISLGG 125 (342)
T ss_pred ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhh-hhH----HhHhhccC
Confidence 456677777777766655544332 12222222 33444444 4566889999999999988 321 111 1235
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccH
Q 002638 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSL 244 (898)
Q Consensus 167 L~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyl 244 (898)
+.+|+..|...+..+-+.|+..|.+++++-+..-...+. .-+++|+++|.+. ...+|..+|-+|++++. .+++..
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR---n~~~g~ 202 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIR---NNKPGQ 202 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh---cCcHHH
Confidence 677777888889999999999999999986432111221 1456777777654 55677889999999985 222233
Q ss_pred HHHH-----HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc
Q 002638 245 EPLL-----QSIHECLGS--TDWATRKAAADALSALALHSS 278 (898)
Q Consensus 245 d~lL-----p~L~e~Lsd--dDW~vRKaA~EaL~sLA~avg 278 (898)
..++ .+|.++|.+ .+..++.-|+..+..|+....
T Consensus 203 ~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 203 DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 3333 356677777 678888889999999988877
No 161
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.15 E-value=0.97 Score=57.97 Aligned_cols=177 Identities=10% Similarity=0.165 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V 136 (898)
.+..-++.|..+...+....+..++.++......+.|..|--.++.+........+.+...+++++.+++..|.|++-.|
T Consensus 145 Vre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv 224 (1549)
T KOG0392|consen 145 VREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDV 224 (1549)
T ss_pred hHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Confidence 45556677888888887777888888888776677899999999999888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCH-hH-HHHHHHHHHHHHHhc--CCCCch-hH-HHHHHH
Q 002638 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK-GV-QSGAAMCMAKMVECA--SDPPVV-AF-QKLCAR 210 (898)
Q Consensus 137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk-~V-QegAasALAkiIE~a--~d~~~~-yL-~~LlPR 210 (898)
|..++.++...+..+.+-.. ..+..++.-|...|.+=+- .. -+....-|+++|-.. -+.... -+ ..|+|+
T Consensus 225 ~~~aa~~l~~~~s~~v~l~~----~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~ 300 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSIQVKLMV----QKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPR 300 (1549)
T ss_pred HHHHHHHhhhhhHHHHhhhH----hHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchh
Confidence 99999988777776633221 2344444444444422111 00 011112223333211 000000 12 368999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhcc
Q 002638 211 ICKLLSNQNFMAKASLLPVVGSLSQVG 237 (898)
Q Consensus 211 LlkLLks~~~kaK~alL~aIgSLA~vG 237 (898)
+...+.|.-+.++.++++.+-.+..+.
T Consensus 301 ~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 301 LWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998999999999988886554
No 162
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.11 E-value=2.6 Score=46.40 Aligned_cols=158 Identities=14% Similarity=0.188 Sum_probs=105.8
Q ss_pred HHHHHHHHHhc--hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc---ccCCchhHHhhHHHHHHHHh
Q 002638 101 RLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK---EENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 101 lLLG~IAEg~g--d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~---~e~~~~~~~~lL~pL~eaL~ 175 (898)
..|.-++..+. ..+..|++-|+|.|+.-+-|.++.+|-..|.++..|...+.... ... ......|-+.|+.+|.
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~-tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR-TGLFSVFEDALFPCLY 176 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-cChHHHHHHHHHHHhh
Confidence 45555555333 44889999999999999999999999999999999998773211 000 0124445555555554
Q ss_pred --------cCCHhHHHHHHHHHHHHHHhcCC----CCchhHHHHHHH-HHHHhcC----CchhhHHHHHHHHHHHHh-cc
Q 002638 176 --------EQNKGVQSGAAMCMAKMVECASD----PPVVAFQKLCAR-ICKLLSN----QNFMAKASLLPVVGSLSQ-VG 237 (898)
Q Consensus 176 --------eqnk~VQegAasALAkiIE~a~d----~~~~yL~~LlPR-LlkLLks----~~~kaK~alL~aIgSLA~-vG 237 (898)
++...+-..|.-||..++.-... .-...+.+++-. ++.-+.+ ++......++..+..++. .|
T Consensus 177 ~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 177 YLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 45666777888888888764311 111234444433 4444443 246677788888888874 56
Q ss_pred ccCcccHHHHHHHHHHhhCCCC
Q 002638 238 AIAPQSLEPLLQSIHECLGSTD 259 (898)
Q Consensus 238 a~~~pyld~lLp~L~e~LsddD 259 (898)
-....|+..+++.|.+.+.+.+
T Consensus 257 i~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 257 ISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred cHHHHHHHHHHHHHHHHhcCCC
Confidence 5667899999999999988754
No 163
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.06 E-value=4.2 Score=47.80 Aligned_cols=221 Identities=16% Similarity=0.201 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHH-HHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHHHHHHhhcCCC-
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLN-CLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSD- 133 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs-~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~~IlrrLkDpD- 133 (898)
+|-.|+..|-.+...++.+.+..++. .|...+++.-...|-.+.+++..-+..+... ..+..+.+.+.+...|.++.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~~ 182 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPEP 182 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCCC
Confidence 66678888888888886666666666 4677777777888888988888888877644 22224455666666666443
Q ss_pred ----------hHHHHHHHHHHHHHHHHHh-------------cc-c----------------------------c-----
Q 002638 134 ----------SGMKEACRDSIGSLSKLYL-------------NG-K----------------------------E----- 156 (898)
Q Consensus 134 ----------s~VR~Ac~~tLG~LA~~li-------------k~-~----------------------------~----- 156 (898)
..||.-|...+..+..+.. +. . .
T Consensus 183 ~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~ 262 (441)
T PF12054_consen 183 PYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLS 262 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccch
Confidence 3556666666666665554 10 0 0
Q ss_pred -----------------------------------------cCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHH
Q 002638 157 -----------------------------------------ENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 157 -----------------------------------------e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE 194 (898)
....+....+++||++.+ .|.|...|.-||.+|+.+|+
T Consensus 263 a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~ 342 (441)
T PF12054_consen 263 ALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKREENELLQQRSAESLARLIQ 342 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 000013667888888888 67889999999999999998
Q ss_pred hcCCCCchhHHHHHHHHHHHhcC-----CchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638 195 CASDPPVVAFQKLCARICKLLSN-----QNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADA 269 (898)
Q Consensus 195 ~a~d~~~~yL~~LlPRLlkLLks-----~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea 269 (898)
.+-.--..--++|+-.|+.+|-. |.|.......+-|-++..-..... .....-.+--...-.=.|+.|..+
T Consensus 343 ~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~----~~~~~~~~~~~~~a~I~RrGA~~a 418 (441)
T PF12054_consen 343 LCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKAD----HADAASEEREQKEARIQRRGAELA 418 (441)
T ss_pred HHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhccccc----ccccccchhhhhhhHHHhcCHHHH
Confidence 75322223456777777777732 333322233334444432110000 000000001111123468889999
Q ss_pred HHHHHHhcchHH
Q 002638 270 LSALALHSSNLV 281 (898)
Q Consensus 270 L~sLA~avge~L 281 (898)
|..|+...|+.+
T Consensus 419 L~~l~~~FG~~L 430 (441)
T PF12054_consen 419 LEQLAKRFGSSL 430 (441)
T ss_pred HHHHHHHHhHHH
Confidence 999999999443
No 164
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=8.2 Score=51.90 Aligned_cols=235 Identities=17% Similarity=0.189 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCC-hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh-hcCCC
Q 002638 57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPK-PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR-LKDSD 133 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k-~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr-LkDpD 133 (898)
..-.|+..|.+..-.+.+.+ +..-+..|+.-.++.+ |.++.-++.++..+++.++....-|...-++-+... |.+|.
T Consensus 935 ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~ 1014 (2067)
T KOG1822|consen 935 GHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT 1014 (2067)
T ss_pred HHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc
Confidence 44477888888888776544 5554555655544444 589999999999999999987777777777766666 45555
Q ss_pred h--HHHHHHHHHHH------HHHHHHhcccccCC----chhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638 134 S--GMKEACRDSIG------SLSKLYLNGKEENN----GTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPP 200 (898)
Q Consensus 134 s--~VR~Ac~~tLG------~LA~~lik~~~e~~----~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~ 200 (898)
. .|+......+. .+..-+..+-..++ -..+..++-.-...+. ..++-+|++|+.||..+==.++.
T Consensus 1015 ~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr-- 1092 (2067)
T KOG1822|consen 1015 SHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR-- 1092 (2067)
T ss_pred chhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--
Confidence 4 45555555544 77777644311111 1223333222222223 44889999999999988655543
Q ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHH-------------------H-HHHhh-CCC
Q 002638 201 VVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQ-------------------S-IHECL-GST 258 (898)
Q Consensus 201 ~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp-------------------~-L~e~L-sdd 258 (898)
.--++.|++.|+.+|.+.+.-.|.+.+.|+.-++.-. .....|...+.+ . ++..| ...
T Consensus 1093 ~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~ 1172 (2067)
T KOG1822|consen 1093 HVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTET 1172 (2067)
T ss_pred hccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCch
Confidence 1247789999999999998888777788877776322 111111111111 0 11112 234
Q ss_pred CHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH
Q 002638 259 DWATRKAAADALSALALHSS-NLVIDGATSTLTVLE 293 (898)
Q Consensus 259 DW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE 293 (898)
|-.+++--.++|..+....- +.|..++..|.+++.
T Consensus 1173 d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l~k~~l~ 1208 (2067)
T KOG1822|consen 1173 DNKLLKNILETLSRMLNSLADELLSSWLMLLKDLLQ 1208 (2067)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56666777777777554444 667766666666665
No 165
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.77 E-value=0.27 Score=56.31 Aligned_cols=130 Identities=14% Similarity=0.116 Sum_probs=83.7
Q ss_pred CChhHHHHHHH-HHHHHHhcCCCCCHHHHHHHHhhh------cCCCChhhHHHHHHHHHHHHHHhch---------hchh
Q 002638 53 ADRDTHQIAIE-DLEKTIQTLSQESLPMLLNCLYES------SNDPKPAVKKESVRLLALVCELHSE---------LTST 116 (898)
Q Consensus 53 sDrDT~k~Aa~-eLD~Ia~~L~pe~Lp~fLs~L~es------~~s~k~~vRKeAIlLLG~IAEg~gd---------~I~P 116 (898)
+|-+|++.|+. -|..+.........+.++.++... ..+.+|..+..|+.+++.++..... .+.+
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 45566665555 455666555433344444444332 3467899999999999999876521 1223
Q ss_pred hHHHHHHHHHHhhc---CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002638 117 HVTKIISHIVKRLK---DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (898)
Q Consensus 117 hLpkIL~~IlrrLk---DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasAL 189 (898)
...-...+|+.-|+ ...|.+|..|++.+..+-.++. .+.+..+++.|+..|..++..|..-||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~-------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP-------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC-------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33344445555566 4568999999999999988873 256888999999999999999998888875
No 166
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.77 E-value=13 Score=50.64 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=144.3
Q ss_pred HHHHHHh---cCCCCCHHHHHHHHhhhcC-CC--ChhhHHHHHHHHHHHHHHhchhchh----hHHHHHHHHHHhhcCCC
Q 002638 64 DLEKTIQ---TLSQESLPMLLNCLYESSN-DP--KPAVKKESVRLLALVCELHSELTST----HVTKIISHIVKRLKDSD 133 (898)
Q Consensus 64 eLD~Ia~---~L~pe~Lp~fLs~L~es~~-s~--k~~vRKeAIlLLG~IAEg~gd~I~P----hLpkIL~~IlrrLkDpD 133 (898)
.+++|-. .|+.+.|..|+.+|..-.. .. ...-|--++.-|..++....+.+.= .+..|-.++++.-.+++
T Consensus 1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076 1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence 5566654 4677778888888875421 10 1234777888887887777766543 44446666666556667
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 002638 134 SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARIC 212 (898)
Q Consensus 134 s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLl 212 (898)
..|+--|.++|.+|+-.++....-.+-..-..||+|+...|. ..+..+++-...|+..+++....-+..--..++-=|.
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs 1230 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFT 1230 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 789999999999999988653100011223479999998884 5678999999999999998753333222222333333
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcc-ccC----cccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcc--------
Q 002638 213 KLLSNQNFMAKASLLPVVGSLSQVG-AIA----PQSLEPLLQSIHECLGST-DWATRKAAADALSALALHSS-------- 278 (898)
Q Consensus 213 kLLks~~~kaK~alL~aIgSLA~vG-a~~----~pyld~lLp~L~e~Lsdd-DW~vRKaA~EaL~sLA~avg-------- 278 (898)
......+..+-..+++++.-|..-. ..+ ...+..++-+|.++.... +..+=..|++.|-.++..+-
T Consensus 1231 ~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~ 1310 (1780)
T PLN03076 1231 TAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSS 1310 (1780)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccc
Confidence 3333444333334455555443211 111 246667777777776542 22232344444443322220
Q ss_pred ----------------------------hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638 279 ----------------------------NLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 279 ----------------------------e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
+...-+-=.++..|..+..|...+||..|++.|
T Consensus 1311 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtL 1371 (1780)
T PLN03076 1311 RNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVL 1371 (1780)
T ss_pred cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 011112233455555667788888999988776
No 167
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.75 E-value=2.6 Score=51.65 Aligned_cols=172 Identities=12% Similarity=0.111 Sum_probs=113.3
Q ss_pred HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-
Q 002638 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQES-LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL- 113 (898)
Q Consensus 36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~- 113 (898)
..-.++.-.+.-++++....++.-+-++-+|.|++.++++. ...+|+.|+....+.+..+.+.++..+..+++.....
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~ 424 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF 424 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH
Confidence 33455556666667766667788899999999999987655 8889999999888888999999999999999976522
Q ss_pred chhhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (898)
Q Consensus 114 I~PhLpkIL~~Ilr-rLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki 192 (898)
+. ..|+|.|.. .++.....|+..|..+++.++..+ +. ...-..+.|++.++...++.+-.+-....+++
T Consensus 425 vk---~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-D~------~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 425 VK---QAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-DK------AAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HH---HHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-HH------HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 21 223333322 466678899999999999999777 21 12334556777777666666654433333333
Q ss_pred HHhcCCCCchhHHHHHHHHHHHhcC
Q 002638 193 VECASDPPVVAFQKLCARICKLLSN 217 (898)
Q Consensus 193 IE~a~d~~~~yL~~LlPRLlkLLks 217 (898)
.=.......-.-+.+||.++.+...
T Consensus 495 ~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 495 ALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred Hhhcccceeeehhhhhhhhhhhhhc
Confidence 2221211111234566666655443
No 168
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.67 E-value=1.2 Score=49.29 Aligned_cols=217 Identities=13% Similarity=0.094 Sum_probs=116.0
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc---hhhHH----HHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT---STHVT----KIISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I---~PhLp----kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~ 149 (898)
...|+..|... +.+..+.+..+.+++.+....+... ..+-. .....+++.|.-+|..|...++..++.|+.
T Consensus 57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33445444433 4567888888888888888776432 22111 255667778888999999999999999988
Q ss_pred HHhcccccCCchhHHhhHHHHHHHHhc----CCHhHHHHHHHHHHHHHHhc--CCCCchhHHHHHHHHHHHh------c-
Q 002638 150 LYLNGKEENNGTVVGLFVKPLFEAMME----QNKGVQSGAAMCMAKMVECA--SDPPVVAFQKLCARICKLL------S- 216 (898)
Q Consensus 150 ~lik~~~e~~~~~~~~lL~pL~eaL~e----qnk~VQegAasALAkiIE~a--~d~~~~yL~~LlPRLlkLL------k- 216 (898)
+.-... ......+++.++..|.+ .+..+|..|+.||+.++..- +..... ...++.|..+| +
T Consensus 135 ~~~~~~----~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~ 208 (312)
T PF03224_consen 135 QGPKRS----EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSN 208 (312)
T ss_dssp STTT------HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-------
T ss_pred cCCccc----cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCC
Confidence 873221 12124678888888854 34567889999999999642 111111 35666667777 2
Q ss_pred CCchhhHHHHHHHHHHHH---h-ccccCcccHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHhcchHHHhh-----HH
Q 002638 217 NQNFMAKASLLPVVGSLS---Q-VGAIAPQSLEPLLQSIHECLGST-DWATRKAAADALSALALHSSNLVIDG-----AT 286 (898)
Q Consensus 217 s~~~kaK~alL~aIgSLA---~-vGa~~~pyld~lLp~L~e~Lsdd-DW~vRKaA~EaL~sLA~avge~L~Py-----~~ 286 (898)
+.+++..-.++-|+=-+. . ++.....| ++|.|.+.+... --.+=+-++-+|..++....+.+.+- +.
T Consensus 209 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l 285 (312)
T PF03224_consen 209 SSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL 285 (312)
T ss_dssp --HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH
T ss_pred CCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH
Confidence 234555555555554442 1 11222333 788888876652 22333344556666665555433333 34
Q ss_pred HHHHHHHhhhcCCChhhHH
Q 002638 287 STLTVLEACRFDKIKPVRD 305 (898)
Q Consensus 287 ~~I~~LE~~RfDKvKpVRD 305 (898)
.+++.|+..++ .++.+.|
T Consensus 286 ~~l~~L~~rk~-~Dedl~e 303 (312)
T PF03224_consen 286 KTLQNLSERKW-SDEDLTE 303 (312)
T ss_dssp HHHHHHHSS---SSHHHHH
T ss_pred HHHHHHhcCCC-CCHHHHH
Confidence 45566666666 4443444
No 169
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=92.65 E-value=1.3 Score=42.17 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcC----CchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-h
Q 002638 206 KLCARICKLLSN----QNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-N 279 (898)
Q Consensus 206 ~LlPRLlkLLks----~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e 279 (898)
-++.++-..+.+ ..+.-|..+|.+|+.++..+ .....+..++|.+|...+..+ .+|..|++|...+...++ +
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 355666666655 45666778899999998755 666777888888888888876 899999999999999999 8
Q ss_pred HHHhhHHHHHHHHH
Q 002638 280 LVIDGATSTLTVLE 293 (898)
Q Consensus 280 ~L~Py~~~~I~~LE 293 (898)
.+.|+++.++-++.
T Consensus 89 ~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 89 DLGPLLDQIFAILL 102 (107)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999887664
No 170
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=92.64 E-value=5.3 Score=46.10 Aligned_cols=209 Identities=16% Similarity=0.106 Sum_probs=125.8
Q ss_pred CChhhHHHHHHHHHHH--HHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH
Q 002638 91 PKPAVKKESVRLLALV--CELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (898)
Q Consensus 91 ~k~~vRKeAIlLLG~I--AEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~ 168 (898)
.....|.+++.-+.++ ++.+++.+.|-...+...+.+.|+-|++.=.-.+.-.+|.++-.+. + ++.+++......+
T Consensus 72 k~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg-~-~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 72 KSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAG-P-GQEEEEWTKTLGP 149 (427)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhcc-C-cchhhHHHhccch
Confidence 3455688877665544 5667788999989999999999999998777777777787777772 1 2223344444555
Q ss_pred HHHHHHhcCCHhHH--HHHHHHHHHHHHhc-CCCCchhHHHHHHHHHH----HhcCCc-----hhhHHHHHHHHHHHH--
Q 002638 169 PLFEAMMEQNKGVQ--SGAAMCMAKMVECA-SDPPVVAFQKLCARICK----LLSNQN-----FMAKASLLPVVGSLS-- 234 (898)
Q Consensus 169 pL~eaL~eqnk~VQ--egAasALAkiIE~a-~d~~~~yL~~LlPRLlk----LLks~~-----~kaK~alL~aIgSLA-- 234 (898)
.++-.+.+++..++ ..+|.||+..|-.+ .+.+.-+.-.+|-...- +..... .+.-..++.|+.+=+
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~ 229 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLTAWSLL 229 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHHHHHHH
Confidence 55555566666665 56777888777654 33222222223322211 222211 111112222222211
Q ss_pred -hcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc----hHHHhhHHHHHHHHHhhhcCCCh
Q 002638 235 -QVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS----NLVIDGATSTLTVLEACRFDKIK 301 (898)
Q Consensus 235 -~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg----e~L~Py~~~~I~~LE~~RfDKvK 301 (898)
... +..........|.|-.+|..++-..|.++.+++..|..... +.+-|-++.+...|.....|..|
T Consensus 230 Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssK 303 (427)
T KOG2842|consen 230 LTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSK 303 (427)
T ss_pred HHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhh
Confidence 011 11112222355778888999999999999998888776654 66778889988888877766443
No 171
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=92.38 E-value=1.2 Score=52.36 Aligned_cols=205 Identities=15% Similarity=0.177 Sum_probs=130.2
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccccc---CCchhH
Q 002638 88 SNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEE---NNGTVV 163 (898)
Q Consensus 88 ~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e---~~~~~~ 163 (898)
.++.+..+|.+|++++++.+-.++-. ..-+...-..-|+..|.|..-.+|.-+.|++|.+...++...+. ......
T Consensus 400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s 479 (728)
T KOG4535|consen 400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS 479 (728)
T ss_pred cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH
Confidence 35667889999999999887766533 45566677778889999999999999999999999999764211 011223
Q ss_pred HhhHHHHHHHHh---cCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHH-HHHHhcC---C-chhhHHHHHHHHHHHHh
Q 002638 164 GLFVKPLFEAMM---EQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCAR-ICKLLSN---Q-NFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 164 ~~lL~pL~eaL~---eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPR-LlkLLks---~-~~kaK~alL~aIgSLA~ 235 (898)
..++..++.+-. ..+-.|..-|+-+|..+.+-.......-+..++.- +.+++.. + .+++|..+--+||-++.
T Consensus 480 g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 480 GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 333333333321 23556788888888887775432222223333322 2222222 2 57888877778888875
Q ss_pred ccc---cCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHH
Q 002638 236 VGA---IAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS--NLVIDGATSTLTVL 292 (898)
Q Consensus 236 vGa---~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~L 292 (898)
-.+ ...+....+-+.|...+.+ .+..+|..|+-+|...+.-.+ +.|.-.....+.+|
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYALSWNALVTAL 622 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHH
Confidence 332 2245666777777777655 778999999999888777666 43433334444333
No 172
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=4.7 Score=49.49 Aligned_cols=155 Identities=8% Similarity=0.135 Sum_probs=110.3
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-h----hchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-E----LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d----~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
+..+=++|....+-.+..||..|..+|=..-=.-+ + .+-.-+.+=.-.+...|.|+-|.||+.+...+-.+...+
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34455677777788889999999888754422222 2 222334444557788899999999999988777666554
Q ss_pred hcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 002638 152 LNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVV 230 (898)
Q Consensus 152 ik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aI 230 (898)
-.-.+ ..++..+|.-+++.| .+..-.|.-+.+.||..+..+ .+..+.|..++|++-..|.+.+.++|.|.++.|
T Consensus 252 We~iP---~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 252 WEMIP---PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred HHHcC---HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence 32111 245677777788877 355557777788888888763 334578999999999999999999999999988
Q ss_pred HHHHhc
Q 002638 231 GSLSQV 236 (898)
Q Consensus 231 gSLA~v 236 (898)
.-+-.+
T Consensus 327 l~ik~v 332 (1005)
T KOG1949|consen 327 LKIKAV 332 (1005)
T ss_pred HHHHhh
Confidence 877433
No 173
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=92.26 E-value=6.7 Score=46.75 Aligned_cols=201 Identities=18% Similarity=0.200 Sum_probs=115.2
Q ss_pred hhHhHHHHHHHHHHHHHcC--CC---------------hhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhh--h--cCCCC
Q 002638 34 SHLAMVEMKQKILTSLSKL--AD---------------RDTHQIAIEDLEKTIQTLSQESLPMLLNCLYE--S--SNDPK 92 (898)
Q Consensus 34 ~~~~~~eLK~rll~~L~KL--sD---------------rDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~e--s--~~s~k 92 (898)
..+.+.+.|..++..|..- .| .+....|-..|.++...+....+...|-.|+- . ..+..
T Consensus 213 ~~~~L~~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~ 292 (501)
T PF13001_consen 213 SRENLTERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGR 292 (501)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCC
Confidence 4568999999999988554 23 22556677777777766644344433444432 1 11111
Q ss_pred hhhHHH-HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC--ChHHHHHHHHHH---HHHHHHHhcccccCCchhHHhh
Q 002638 93 PAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKDS--DSGMKEACRDSI---GSLSKLYLNGKEENNGTVVGLF 166 (898)
Q Consensus 93 ~~vRKe-AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp--Ds~VR~Ac~~tL---G~LA~~lik~~~e~~~~~~~~l 166 (898)
++++-. -.++|..+++...-. .+.+.++..+..+|... .+.+|..+..-+ .....++
T Consensus 293 ~pa~~~lq~kIL~~L~kS~~Aa--~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~--------------- 355 (501)
T PF13001_consen 293 PPASPRLQEKILSLLSKSVIAA--TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI--------------- 355 (501)
T ss_pred CCCCHHHHHHHHHHHHHhHHHH--hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhc---------------
Confidence 222221 245555555533222 23355666666777666 556666665544 2222222
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh--------cCCchhhHHHHHHHHHHHHhcc-
Q 002638 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL--------SNQNFMAKASLLPVVGSLSQVG- 237 (898)
Q Consensus 167 L~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLL--------ks~~~kaK~alL~aIgSLA~vG- 237 (898)
.......|..+++ ..+.+++ .+.....|..+|.+||.++..-
T Consensus 356 ---------------~~~~l~~l~~~i~--------------~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 356 ---------------SPQILKLLRPVIL--------------SQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred ---------------CHHHHHHHHHHHH--------------hcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 0111112222222 2222333 1235667889999999998533
Q ss_pred ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHH
Q 002638 238 AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLV 281 (898)
Q Consensus 238 a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L 281 (898)
..+..- -.++..|++.|.+++.++|-+.-|||+.|+.+..+.-
T Consensus 407 ~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~ 449 (501)
T PF13001_consen 407 SLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLP 449 (501)
T ss_pred cccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccc
Confidence 333111 3577788888888999999999999999999998543
No 174
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.14 E-value=6.6 Score=47.27 Aligned_cols=215 Identities=20% Similarity=0.127 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHH
Q 002638 62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACR 141 (898)
Q Consensus 62 a~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~ 141 (898)
+..|-.++..++-++|..+...+.... .+...|+.-+-+|..+... |-+.-|+..|.. .+-.-- -+.
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~------~av~~i~~~I~~----~~~~~~-ea~ 415 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTN------PAVKFIKDLIKS----KKLTDD-EAA 415 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SH------HHHHHHHHHHHT----T-S-HH-HHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHc----CCCCHH-HHH
Confidence 677788888776656666666555322 3456666666666543221 122222332322 221111 133
Q ss_pred HHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh----cCCHhHHHHHHHHHHHHHHhc-CC-------------CCchh
Q 002638 142 DSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM----EQNKGVQSGAAMCMAKMVECA-SD-------------PPVVA 203 (898)
Q Consensus 142 ~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~----eqnk~VQegAasALAkiIE~a-~d-------------~~~~y 203 (898)
..+..|......| -.+++.-|++.+. .+++.+..+|+.+++.++-.. .. ....|
T Consensus 416 ~~l~~l~~~~~~P--------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~ 487 (618)
T PF01347_consen 416 QLLASLPFHVRRP--------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKY 487 (618)
T ss_dssp HHHHHHHHT-------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGG
T ss_pred HHHHHHHhhcCCC--------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHH
Confidence 4455555555333 2456666666663 457788899999999988652 22 11234
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHHhcchH
Q 002638 204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST---DWATRKAAADALSALALHSSNL 280 (898)
Q Consensus 204 L~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsdd---DW~vRKaA~EaL~sLA~avge~ 280 (898)
++.|...|.......+...+..+|.+||=+ | . ..+++.|..++.+. ...+|.+|+.+|..++...++.
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~---g--~----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNL---G--H----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHH---T-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhcc---C--C----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Confidence 555555555555555556566666666654 2 1 23555565665554 6889999999999887766665
Q ss_pred HHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638 281 VIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 281 L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
+.+.+-+ ++... ....+||=+|..+|
T Consensus 559 v~~~l~~---I~~n~--~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 559 VREILLP---IFMNT--TEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHHHHH---HHH-T--TS-HHHHHHHHHHH
T ss_pred HHHHHHH---HhcCC--CCChhHHHHHHHHH
Confidence 5544332 22221 12344777654443
No 175
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.12 E-value=23 Score=40.97 Aligned_cols=212 Identities=14% Similarity=0.205 Sum_probs=126.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHH-----HHhhhc--CCCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLN-----CLYESS--NDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIIS 123 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs-----~L~es~--~s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~ 123 (898)
.+++.+..|+.-|.-++. +++.+..++. +|.-++ .+..-..|++|++++-.+.+... +.+. .-|+.
T Consensus 37 ~~~~vraa~yRilRy~i~--d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~---~~vvr 111 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLIS--DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIP---RGVVR 111 (371)
T ss_pred CcHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCC---HHHHH
Confidence 458889999988887776 3333333322 111111 23346689999999999999843 3333 44577
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc--CCCCc
Q 002638 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA--SDPPV 201 (898)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a--~d~~~ 201 (898)
.|+....+++-..|.+|.+++..|+-.-.+- -....-++.|++++.|..-.+.+..+.++-.+++.- +.-..
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~l------v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPEL------VAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHH------HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence 7777778899999999999988887543110 012224577888887754446667777777777653 11111
Q ss_pred h-h-HHHHHHHHHHH----hcCCc-h-hhHHHHHHHHHHHHh--cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638 202 V-A-FQKLCARICKL----LSNQN-F-MAKASLLPVVGSLSQ--VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADA 269 (898)
Q Consensus 202 ~-y-L~~LlPRLlkL----Lks~~-~-kaK~alL~aIgSLA~--vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea 269 (898)
+ + |+.|+--+... .+..+ . +.+ ..-.+|.++.. .| ....+-+ .-+..|.++|.-+...+|+...|.
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildl 263 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDL 263 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 1 44444444433 22111 1 222 22333444432 34 1222333 567788899999999999999999
Q ss_pred HHHHHHhc
Q 002638 270 LSALALHS 277 (898)
Q Consensus 270 L~sLA~av 277 (898)
|..+...-
T Consensus 264 l~dllrik 271 (371)
T PF14664_consen 264 LFDLLRIK 271 (371)
T ss_pred HHHHHCCC
Confidence 99766533
No 176
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.03 E-value=25 Score=39.65 Aligned_cols=142 Identities=15% Similarity=0.190 Sum_probs=95.4
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c---CCCChhhHHHHHHHHHHHHHHhchhc----hhhHHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S---NDPKPAVKKESVRLLALVCELHSELT----STHVTKI 121 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es----~---~s~k~~vRKeAIlLLG~IAEg~gd~I----~PhLpkI 121 (898)
-|.+.-.+...-+.++-..+. +.++.++..+.+. + -..-|..|..-..+|..+.+.|...+ .+.+..+
T Consensus 88 r~~evL~l~~~ii~kl~~~~~-~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~ 166 (319)
T PF08767_consen 88 REPEVLSLMATIINKLGELIQ-PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLV 166 (319)
T ss_dssp S-HHHHHHHHHHHHHHGGGCC-CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH
Confidence 355566666666677666554 4677777777654 2 23458999999999999999998764 4578999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh----HHhhHHHHHHHHhcCC-H---hHHHHHHHHHHHHH
Q 002638 122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV----VGLFVKPLFEAMMEQN-K---GVQSGAAMCMAKMV 193 (898)
Q Consensus 122 L~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~----~~~lL~pL~eaL~eqn-k---~VQegAasALAkiI 193 (898)
+-.|+.+++++...|-..|+.++..|...+.....+..... +-.++.-+|..|.|.. + ..|......|=.++
T Consensus 167 idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~v 246 (319)
T PF08767_consen 167 IDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLV 246 (319)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999966111111122 3344455555555442 2 33433444444444
Q ss_pred Hh
Q 002638 194 EC 195 (898)
Q Consensus 194 E~ 195 (898)
|.
T Consensus 247 e~ 248 (319)
T PF08767_consen 247 ES 248 (319)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 177
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.95 E-value=19 Score=42.48 Aligned_cols=241 Identities=12% Similarity=0.091 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh----c-CCCChhhHHHHHHHHHHHHHH
Q 002638 38 MVEMKQKILTSLSKLA---DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYES----S-NDPKPAVKKESVRLLALVCEL 109 (898)
Q Consensus 38 ~~eLK~rll~~L~KLs---DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es----~-~s~k~~vRKeAIlLLG~IAEg 109 (898)
+..|-+.+...+.+-+ +...-|+.+.-|-.+-+.+.| ....++..|... . +-.||..-....-.+|.+++.
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p-~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP-IAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 3566677777776643 222444444444333333222 233444444322 2 334566666677788888776
Q ss_pred hch----hchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHH
Q 002638 110 HSE----LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSG 184 (898)
Q Consensus 110 ~gd----~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQeg 184 (898)
..+ .+..+-+.++|.+..-|+..-...--=+-..++.|.+... .+...+.+..++++|+.-.. +..-++ -|
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~---~~~~p~~y~~L~~~Ll~p~lWe~~gni-Pa 178 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP---SSPLPDAYKQLFPPLLSPALWERRGNI-PA 178 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHTSGGGGGSTTTH-HH
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCCcHHHHHHHHHHcCcchhccCCCc-Cc
Confidence 443 2445666666666666654322222222334555555552 11223445566666665442 333344 34
Q ss_pred HHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCC-CC
Q 002638 185 AAMCMAKMVECASDPPV--VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGS-TD 259 (898)
Q Consensus 185 AasALAkiIE~a~d~~~--~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG-a~~~pyld~lLp~L~e~Lsd-dD 259 (898)
...-|.++++..+..+. +.+..++-.+-+++.+..... ...+.+.+++. .. ....+|+..++..|+..|.. ..
T Consensus 179 lvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT 256 (435)
T PF03378_consen 179 LVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT 256 (435)
T ss_dssp HHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 45566777776544333 578888888899998875432 34567777764 33 56788999999999988874 45
Q ss_pred HHHHHHHHHHHHHHHHhcc-hHHHhhH
Q 002638 260 WATRKAAADALSALALHSS-NLVIDGA 285 (898)
Q Consensus 260 W~vRKaA~EaL~sLA~avg-e~L~Py~ 285 (898)
....+.-+-.++.++...| +.+...+
T Consensus 257 ~kf~~~fv~F~~~~~~~~g~~~li~~i 283 (435)
T PF03378_consen 257 EKFVKRFVVFLSLFAIKYGPDFLIQTI 283 (435)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5666666666676666666 5555444
No 178
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.91 E-value=22 Score=39.27 Aligned_cols=186 Identities=19% Similarity=0.146 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc----hhHHhhHHHHHHHHhcCC-----HhHHHHHHH
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG----TVVGLFVKPLFEAMMEQN-----KGVQSGAAM 187 (898)
Q Consensus 117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~----~~~~~lL~pL~eaL~eqn-----k~VQegAas 187 (898)
..+-|-+.|+++|.-+. --+.+...+.+|+..--.+-.+..+ -.+-..+|-++..+.+.+ +.+ ...|.
T Consensus 61 ~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~-~~~A~ 137 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQEC-IEIAE 137 (262)
T ss_pred CchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHH-HHHHH
Confidence 34567778888887665 3455666677776654322111111 123445677777776555 223 35778
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHH
Q 002638 188 CMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAA 267 (898)
Q Consensus 188 ALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~ 267 (898)
+|+.+++..+.. =+-+++..+....|+.+..-+.++.+.+. ...|+.|--.++-.|.+.|.+.-.-+|..++
T Consensus 138 ~La~~a~~~~~~-------~La~il~~ya~~~fr~~~dfl~~v~~~l~-~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 138 ALAQVAEAQGLP-------NLARILSSYAKGRFRDKDDFLSQVVSYLR-EAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHhCCCc-------cHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 999999865433 12444555556677777766666555443 1345788888999999999998778899999
Q ss_pred HHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 268 DALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 268 EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
++|..+...+.-. .|+-.++|..+...... +-..+||+..+.+-.+
T Consensus 210 ~iL~~ll~~~d~~-~~~~~dlispllrlL~t------~~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 210 QILKVLLPHVDMR-SPHGADLISPLLRLLQT------DLWMEALEVLDEIVTR 255 (262)
T ss_pred HHHHHHhccccCC-CCcchHHHHHHHHHhCC------ccHHHHHHHHHHHHhh
Confidence 9999999888711 44666666655443333 3555788888877754
No 179
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=91.83 E-value=0.37 Score=46.25 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh----------------chhhHHHHHH
Q 002638 60 IAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL----------------TSTHVTKIIS 123 (898)
Q Consensus 60 ~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~----------------I~PhLpkIL~ 123 (898)
..+..|-.|+..--|+..+.|+..|....++ .+......+.+|..+.+-..+. +..+++.|+.
T Consensus 7 kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~ 85 (148)
T PF08389_consen 7 KLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILE 85 (148)
T ss_dssp HHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555543355667777777665543 4677778888888888776541 3346788888
Q ss_pred HHHHhhcCCC----hHHHHHHHHHHHHHHHHHhcccccCCchhH-HhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002638 124 HIVKRLKDSD----SGMKEACRDSIGSLSKLYLNGKEENNGTVV-GLFVKPLFEAMMEQNKGVQSGAAMCM 189 (898)
Q Consensus 124 ~IlrrLkDpD----s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~-~~lL~pL~eaL~eqnk~VQegAasAL 189 (898)
++.+.|.... ..+..++..+++.+..|+.-. ... ..++..++..| +++..+++|+.||
T Consensus 86 ~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~------~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 86 ILSQILSQSSSEANEELVKAALKCLKSWISWIPIE------LIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH------HHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH------HhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 8888887766 677888888888887766211 111 23778888888 4556699999887
No 180
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.70 E-value=18 Score=45.30 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=84.3
Q ss_pred hhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCC-chhHH--HHHHHHHHHhcCCch--hhHHHHHHHHHHHH
Q 002638 161 TVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPP-VVAFQ--KLCARICKLLSNQNF--MAKASLLPVVGSLS 234 (898)
Q Consensus 161 ~~~~~lL~pL~eaL~eq-nk~VQegAasALAkiIE~a~d~~-~~yL~--~LlPRLlkLLks~~~--kaK~alL~aIgSLA 234 (898)
..+..|+.+|...+... +.....-+.++|+.+-- ++.. ..++. .|+|.|..+|..... .+--.++-++|+++
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI--PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc--CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 45778999999988543 43333334444443332 2222 24565 489999999975422 12223344566655
Q ss_pred hccccCcccH--HHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHhcc-hHHHhhH---HHHHHHHHhhhcCCChhhHHH
Q 002638 235 QVGAIAPQSL--EPLLQSIHECLGS--TDWATRKAAADALSALALHSS-NLVIDGA---TSTLTVLEACRFDKIKPVRDS 306 (898)
Q Consensus 235 ~vGa~~~pyl--d~lLp~L~e~Lsd--dDW~vRKaA~EaL~sLA~avg-e~L~Py~---~~~I~~LE~~RfDKvKpVRD~ 306 (898)
.-. .....+ ..+++.|.+.|.. +|-. .++++++.....+- +.-+.++ .+++.+|-....||.++||.+
T Consensus 564 ~d~-~~A~lL~~sgli~~Li~LL~~kqeDdE---~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~ 639 (708)
T PF05804_consen 564 SDP-ECAPLLAKSGLIPTLIELLNAKQEDDE---IVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKV 639 (708)
T ss_pred CCH-HHHHHHHhCChHHHHHHHHHhhCchHH---HHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHH
Confidence 211 111111 2455556666544 2333 35566555444443 2222232 668899999999999999999
Q ss_pred HHHHHHHHH
Q 002638 307 MNEALQLWK 315 (898)
Q Consensus 307 A~eALelWK 315 (898)
+-.+|+..-
T Consensus 640 ~d~~Ldii~ 648 (708)
T PF05804_consen 640 CDNALDIIA 648 (708)
T ss_pred HHHHHHHHH
Confidence 888887643
No 181
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=91.45 E-value=0.33 Score=58.94 Aligned_cols=217 Identities=13% Similarity=0.171 Sum_probs=138.5
Q ss_pred HHHcCCChhHHHHHHHHHHHHHhcCCCCCH-HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHH
Q 002638 48 SLSKLADRDTHQIAIEDLEKTIQTLSQESL-PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIV 126 (898)
Q Consensus 48 ~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~L-p~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Il 126 (898)
.|+.+.=.+..+-.+.-|=.+...++.+.| ..++++|......++-.+|---+.-+...++...+.+. ..+|+|++.
T Consensus 298 Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~--~d~I~phv~ 375 (690)
T KOG1243|consen 298 LLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL--NDQIFPHVA 375 (690)
T ss_pred HHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh--cchhHHHHH
Confidence 345553333566667777777777765553 23466666666677888888888777777777666543 367889999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHH
Q 002638 127 KRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQK 206 (898)
Q Consensus 127 rrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~ 206 (898)
.++.|.++.+|..+..++..|+..+-... .-.++++-|...-.++....-.--..||.++-....... .=.-
T Consensus 376 ~G~~DTn~~Lre~Tlksm~~La~kL~~~~------Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~--R~~v 447 (690)
T KOG1243|consen 376 LGFLDTNATLREQTLKSMAVLAPKLSKRN------LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV--RKRV 447 (690)
T ss_pred hhcccCCHHHHHHHHHHHHHHHhhhchhh------hcHHHHHHHHhhCccccCcccccceeeecccccccchhh--hccc
Confidence 99999999999999999999999886542 234566666666555555555455556666665431100 0112
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHH---HHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 207 LCARICKLLSNQNFMAKASLLPVVGS---LSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 207 LlPRLlkLLks~~~kaK~alL~aIgS---LA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
|.-.+...|++|-..+|.+.+-++.+ ..... .....++|.|.-...|++..+|..|-.++-.-.....
T Consensus 448 L~~aftralkdpf~paR~a~v~~l~at~~~~~~~----~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 448 LASAFTRALKDPFVPARKAGVLALAATQEYFDQS----EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cchhhhhhhcCCCCCchhhhhHHHhhcccccchh----hhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 45556667788766666543333322 22211 1233677777778888888888888877777666554
No 182
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.18 E-value=21 Score=40.45 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=56.3
Q ss_pred chhhHHHHHHHHHHhh------cCCCh----HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCH--hH
Q 002638 114 TSTHVTKIISHIVKRL------KDSDS----GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK--GV 181 (898)
Q Consensus 114 I~PhLpkIL~~IlrrL------kDpDs----~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk--~V 181 (898)
+-||+.++||.|+.+| .+|+- .+|+.|++.++-....+.... ...-+-+...|+.+..+.++ ..
T Consensus 271 vdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Y----ktLkPRvtrTllKafLD~~k~~sT 346 (450)
T COG5095 271 VDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSY----KTLKPRVTRTLLKAFLDREKTEST 346 (450)
T ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhh----hhhchHHHHHHHHHHHhcccccch
Confidence 6899999999988775 23432 488888888877776662211 12245566667777766544 58
Q ss_pred HHHHHHHHHHHHHh-cCCCCc
Q 002638 182 QSGAAMCMAKMVEC-ASDPPV 201 (898)
Q Consensus 182 QegAasALAkiIE~-a~d~~~ 201 (898)
|-||.-||..+--. .+..+.
T Consensus 347 ~YGalkgls~l~ke~ir~~i~ 367 (450)
T COG5095 347 QYGALKGLSILSKEVIRTVIK 367 (450)
T ss_pred hhhhhhhhhhhchhheeeeec
Confidence 99999999888754 344443
No 183
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.12 E-value=9.1 Score=44.12 Aligned_cols=165 Identities=18% Similarity=0.251 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhc-h-h--chhhHHHHHHHH-HHhhc--C--------------------CC-hHHHHHHHHHHHHHHHH
Q 002638 99 SVRLLALVCELHS-E-L--TSTHVTKIISHI-VKRLK--D--------------------SD-SGMKEACRDSIGSLSKL 150 (898)
Q Consensus 99 AIlLLG~IAEg~g-d-~--I~PhLpkIL~~I-lrrLk--D--------------------pD-s~VR~Ac~~tLG~LA~~ 150 (898)
|+..|..+++... . . ..|||..|+..| ++.|. | .| ...|.||++-+-.|+++
T Consensus 162 al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~ 241 (370)
T PF08506_consen 162 ALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK 241 (370)
T ss_dssp HHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence 5556666655432 2 2 267899888744 33322 1 11 35688999999999998
Q ss_pred HhcccccCCchhHHhhHHHHHHHH---hcCCHhHHHHHHHHHHHHHHhc---CC------CCc---hhHH-HHHHHHHHH
Q 002638 151 YLNGKEENNGTVVGLFVKPLFEAM---MEQNKGVQSGAAMCMAKMVECA---SD------PPV---VAFQ-KLCARICKL 214 (898)
Q Consensus 151 lik~~~e~~~~~~~~lL~pL~eaL---~eqnk~VQegAasALAkiIE~a---~d------~~~---~yL~-~LlPRLlkL 214 (898)
.-+.. ...+..++..++... ...|+....||..-+..+.-.. .. ... .++. .++|-|. -
T Consensus 242 ~~~~v----~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~ 316 (370)
T PF08506_consen 242 FEKQV----TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-P 316 (370)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--
T ss_pred HhHHH----HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-c
Confidence 83321 122333333333322 1346777888877777766443 11 111 2222 3445554 1
Q ss_pred hcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638 215 LSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (898)
Q Consensus 215 Lks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL 270 (898)
-.+.+.-.|+-++..|..+.. ..-...+..++|.|..+|.+++.-++.-|+-|+
T Consensus 317 ~~~~~piLka~aik~~~~Fr~--~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 317 DVNSHPILKADAIKFLYTFRN--QLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-S-HHHHHHHHHHHHHHGG--GS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHh--hCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 123455678888888888754 344668889999999999999999988887764
No 184
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.02 E-value=2.1 Score=47.54 Aligned_cols=184 Identities=14% Similarity=0.130 Sum_probs=102.9
Q ss_pred HHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHH------------HHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002638 42 KQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLP------------MLLNCLYESSNDPKPAVKKESVRLLALVCE 108 (898)
Q Consensus 42 K~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp------------~fLs~L~es~~s~k~~vRKeAIlLLG~IAE 108 (898)
..-++.+|+++ ++.|+.+..+..|+.+...-+ .... +|-+++. .....++.+...+..+|..++.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 34455777788 889999999999999887532 2221 2233332 3456789999999999999988
Q ss_pred Hhchhch----hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh-cccccCCchhHHhhHHHHHHHH-----hcC-
Q 002638 109 LHSELTS----THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL-NGKEENNGTVVGLFVKPLFEAM-----MEQ- 177 (898)
Q Consensus 109 g~gd~I~----PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~li-k~~~e~~~~~~~~lL~pL~eaL-----~eq- 177 (898)
....... ..|+.++..+...++.++..+...|..+++.|.+.=- +..+ .-...+++|+..| ...
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f-----~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF-----WKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH-----HTHHHHHHHHHHHH--------
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH-----HhcCcHHHHHHHHHhhcccCCC
Confidence 7776544 4667777777776666777888999988888863210 0111 0134566677766 222
Q ss_pred -CHhHHHHHHHHHHHHHHh--c-CCCCchhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHh
Q 002638 178 -NKGVQSGAAMCMAKMVEC--A-SDPPVVAFQKLCARICKLLSN-QNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 178 -nk~VQegAasALAkiIE~--a-~d~~~~yL~~LlPRLlkLLks-~~~kaK~alL~aIgSLA~ 235 (898)
+...|..++.|+=-+.=+ . ......+ ++|.|+.+++. ...|+--.++.++.-++.
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 445667788887644321 1 1111112 88888888875 345544455555555543
No 185
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=90.87 E-value=21 Score=44.59 Aligned_cols=219 Identities=16% Similarity=0.134 Sum_probs=144.7
Q ss_pred CCCChhhHHHHHHHHHHHHHHhch-------h-ch--hhHHHHHHHHHHh--hcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638 89 NDPKPAVKKESVRLLALVCELHSE-------L-TS--THVTKIISHIVKR--LKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (898)
Q Consensus 89 ~s~k~~vRKeAIlLLG~IAEg~gd-------~-I~--PhLpkIL~~Ilrr--LkDpDs~VR~Ac~~tLG~LA~~lik~~~ 156 (898)
+...|..=+.|+.++=.++|+... . +. ..|-.+++.+... +..+.+.|.---.+.|.++.....-+
T Consensus 450 ~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e-- 527 (980)
T KOG2021|consen 450 KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE-- 527 (980)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--
Confidence 556788889999999999987432 1 22 4566777777765 67788999999999999999888322
Q ss_pred cCCchhHHhhHHHHHHH--HhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC----chh---------
Q 002638 157 ENNGTVVGLFVKPLFEA--MMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ----NFM--------- 221 (898)
Q Consensus 157 e~~~~~~~~lL~pL~ea--L~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~----~~k--------- 221 (898)
.++++.++...++- |..+|.+|.--|.+-+.+++...+....+|.+.++.++..+|+.+ +++
T Consensus 528 ---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fdd 604 (980)
T KOG2021|consen 528 ---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDD 604 (980)
T ss_pred ---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccc
Confidence 13344443333322 235688999999999999999887777889999999999888322 100
Q ss_pred ------------------h--H-------------------------------H------HHHHHHHHHHh---------
Q 002638 222 ------------------A--K-------------------------------A------SLLPVVGSLSQ--------- 235 (898)
Q Consensus 222 ------------------a--K-------------------------------~------alL~aIgSLA~--------- 235 (898)
+ + . .++-+||+++.
T Consensus 605 qlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~ 684 (980)
T KOG2021|consen 605 QLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTE 684 (980)
T ss_pred cceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 0 0 1 12334555541
Q ss_pred --cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638 236 --VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 236 --vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
+| ..|...++.+++.|..+..- -.+|.++--+++.|-..+|+.+-||++..++.|....-- | -+.+-+
T Consensus 685 ~qvg~~~vf~~~ldvil~~ls~f~k~--E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~--k----Emvdfl 756 (980)
T KOG2021|consen 685 NQVGNMVVFSNILDVILVTLSFFNKF--ENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDL--K----EMVDFL 756 (980)
T ss_pred hcccHHHHHHHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCH--H----HHHHHH
Confidence 01 11233444555555554444 358889999999999999999999999999877643211 2 233445
Q ss_pred HHHHHhhcC
Q 002638 312 QLWKKIAGK 320 (898)
Q Consensus 312 elWK~La~~ 320 (898)
.|..++--+
T Consensus 757 ~flsQLihk 765 (980)
T KOG2021|consen 757 GFLSQLIHK 765 (980)
T ss_pred HHHHHHHHH
Confidence 555555433
No 186
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=10 Score=50.19 Aligned_cols=222 Identities=13% Similarity=0.054 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-----CCChhhHHHHHHHHH---HHHHHhchhchhhHHHHHHHHHHh
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-----DPKPAVKKESVRLLA---LVCELHSELTSTHVTKIISHIVKR 128 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~-----s~k~~vRKeAIlLLG---~IAEg~gd~I~PhLpkIL~~Ilrr 128 (898)
+.+++....-.++..++...|.+++..+.+=-. ......+.-.+..++ .+++.+...+.||..+++--.+-.
T Consensus 1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455666666666666665556666666553321 111222333333333 335555555789988888766555
Q ss_pred hcCCC------------hHHHHHHHHHHHHHHHHHhcccccC--Cc-----hhHHhhHHHHHHHHhc----C--CHhHHH
Q 002638 129 LKDSD------------SGMKEACRDSIGSLSKLYLNGKEEN--NG-----TVVGLFVKPLFEAMME----Q--NKGVQS 183 (898)
Q Consensus 129 LkDpD------------s~VR~Ac~~tLG~LA~~lik~~~e~--~~-----~~~~~lL~pL~eaL~e----q--nk~VQe 183 (898)
|+--+ ...| -++..|+|+-.+....+.. +. +....+..|+...+.. . ...|-.
T Consensus 1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence 54433 2334 5566777776665431110 01 2234455566655532 1 222333
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHH
Q 002638 184 GAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWAT 262 (898)
Q Consensus 184 gAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e~LsddDW~v 262 (898)
....|++.+--.+++. +.+|..++++-..+...++|-.+|-.+-.++. .|....+.+..++|.|-+.+.|++-++
T Consensus 1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 4444444333222222 77788888888888888888888877777764 566678899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHhh
Q 002638 263 RKAAADALSALALHSSNLVIDG 284 (898)
Q Consensus 263 RKaA~EaL~sLA~avge~L~Py 284 (898)
-..+.+.+-.+=..+|+.|..|
T Consensus 1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHhchhhhhc
Confidence 8888888888888888877665
No 187
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=90.81 E-value=4.3 Score=38.85 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--CHhHHHHHHHHHHHH
Q 002638 116 THVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKM 192 (898)
Q Consensus 116 PhLpkIL~~IlrrLk-DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--nk~VQegAasALAki 192 (898)
.+++.|+|++.++|+ -..+..|-+|.-.++.|+... .. -+.++..|++++... ....+.-+..||..+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L------~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l 72 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PL------SDEVLNALMESILKNWTQETVQRQALICLIVL 72 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CC------cHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 478999999999999 778899999999999999999 22 456777888887322 222246799999999
Q ss_pred HHhc
Q 002638 193 VECA 196 (898)
Q Consensus 193 IE~a 196 (898)
++.-
T Consensus 73 ~q~q 76 (121)
T PF12397_consen 73 CQSQ 76 (121)
T ss_pred HHcc
Confidence 9754
No 188
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.65 E-value=2.6 Score=53.05 Aligned_cols=126 Identities=13% Similarity=0.214 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhcCCCCC-HHHHHHHHhhhc-CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCCh
Q 002638 57 THQIAIEDLEKTIQTLSQES-LPMLLNCLYESS-NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS 134 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~-Lp~fLs~L~es~-~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs 134 (898)
.+..+.-.|.++... .+. .-.+|+.|...+ -+....+|.--+.+++-+|..|--.+--| +|.|-.+|+||++
T Consensus 947 vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLCDPSV 1020 (1529)
T ss_pred HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhcCchH
Confidence 555666666665542 222 222455544333 23456788889999999888765544444 5677889999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~ 195 (898)
.||..+.-.|++|...-+-. .-..++-..+-+|.+.++.+-.-|=-||+.++..
T Consensus 1021 iVRrqt~ilL~rLLq~~~vK-------w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFGIVK-------WNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhhh-------cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 99999988888776654321 0112333344455577888888888899999875
No 189
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=90.59 E-value=43 Score=39.66 Aligned_cols=167 Identities=11% Similarity=0.134 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCC-------------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHH
Q 002638 40 EMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLS-------------QESLPMLLNCLYESSNDPKPAVKKESVRLLALV 106 (898)
Q Consensus 40 eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~-------------pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~I 106 (898)
....-++.+|.+.+..||.+..+.-++.+.+..+ ++.+.+|+..| +.+++.+-..+..+|..+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL----~~~d~~i~~~a~~iLt~l 128 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL----NRQDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH----cCCchhHHHHHHHHHHHH
Confidence 4455567788888889999999999998887532 23345555533 356778888888888777
Q ss_pred HHHhchh-chhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHH-hcccccCCchhHHhhHHHHHHHHhc--CCHhH
Q 002638 107 CELHSEL-TSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLY-LNGKEENNGTVVGLFVKPLFEAMME--QNKGV 181 (898)
Q Consensus 107 AEg~gd~-I~PhLpkIL~~IlrrLkDpD-s~VR~Ac~~tLG~LA~~l-ik~~~e~~~~~~~~lL~pL~eaL~e--qnk~V 181 (898)
+...... -...+++++..+...|+.++ .....+|..++..|.+.= .+..+- -...+++|+..|.. .+...
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~-----~~~~v~~L~~~L~~~~~~~Ql 203 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV-----LADGVPTLVKLLSNATLGFQL 203 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH-----HccCHHHHHHHHhhccccHHH
Confidence 6533333 23467778888888887654 566677777776653211 011110 01256777777742 25567
Q ss_pred HHHHHHHHHHHHHhcCCCCchhH--HHHHHHHHHHhcC
Q 002638 182 QSGAAMCMAKMVECASDPPVVAF--QKLCARICKLLSN 217 (898)
Q Consensus 182 QegAasALAkiIE~a~d~~~~yL--~~LlPRLlkLLks 217 (898)
|--++.|+=-+--+.. ..+.+ ..++|.|+.+++.
T Consensus 204 ~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~ 239 (429)
T cd00256 204 QYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKE 239 (429)
T ss_pred HHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHh
Confidence 7778888654432111 11111 2477777777764
No 190
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.40 E-value=15 Score=44.33 Aligned_cols=183 Identities=11% Similarity=0.154 Sum_probs=103.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCCh-hhHHHHHHHHHH---HHHHhchh---
Q 002638 41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKP-AVKKESVRLLAL---VCELHSEL--- 113 (898)
Q Consensus 41 LK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~-~vRKeAIlLLG~---IAEg~gd~--- 113 (898)
+-++|..++.. +|..-++-|++.|+ . ++ .|..+|+++...+.+... .+-...+.+|-+ ++....++
T Consensus 208 Yy~~It~a~~g-~~~~~r~eAL~sL~---T--Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 208 YYKEITEACTG-SDEPLRQEALQSLE---T--DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHhhc---c--Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34455555544 45556666665554 4 22 455566665555422111 101123333333 33333332
Q ss_pred -chhhHHHHHHHHHHhhcCC----------ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--CHh
Q 002638 114 -TSTHVTKIISHIVKRLKDS----------DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKG 180 (898)
Q Consensus 114 -I~PhLpkIL~~IlrrLkDp----------Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--nk~ 180 (898)
+.|||..+||.|+.++--. .=.+|+-++..++.++..+... ....-+-+..-|..++.++ ...
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~----y~~L~~Rit~tl~k~l~D~~~~~s 356 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTL----YNNLQPRITRTLSKALLDNKKPLS 356 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHhcCCCCCch
Confidence 6899999999888875432 2358999999888888877321 1123445666666666555 456
Q ss_pred HHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHhcCC----------chhhHHHHHHHHHHHH
Q 002638 181 VQSGAAMCMAKMVECA-SDPPVVAFQKLCARICKLLSNQ----------NFMAKASLLPVVGSLS 234 (898)
Q Consensus 181 VQegAasALAkiIE~a-~d~~~~yL~~LlPRLlkLLks~----------~~kaK~alL~aIgSLA 234 (898)
...||.-+|..+.-.. ...+.+-|+...-++...|... .-++..+++.|...++
T Consensus 357 t~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ii 421 (576)
T KOG2549|consen 357 THYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENPII 421 (576)
T ss_pred hhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhHHH
Confidence 7789999999888643 4444455555555555544332 1234446666666653
No 191
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.28 E-value=62 Score=43.09 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=96.3
Q ss_pred HHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHhcCCchhh
Q 002638 144 IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VAFQKLCARICKLLSNQNFMA 222 (898)
Q Consensus 144 LG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~yL~~LlPRLlkLLks~~~ka 222 (898)
+..|+..++.+. +....++|.-||.-|....+..-.+|..--..+++.+.+-+. .+-++|...++..-... .-.
T Consensus 164 ~~~i~~~li~e~----d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~-~~~ 238 (1266)
T KOG1525|consen 164 MLDIAIMLITEE----DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQ-SSL 238 (1266)
T ss_pred HHHHHHHHHHhh----ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccc-cch
Confidence 555555554431 345677888899988777666665555555555555433222 23334444444332210 001
Q ss_pred HHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChh
Q 002638 223 KASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKP 302 (898)
Q Consensus 223 K~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKp 302 (898)
+.-..+.|--+- -..+.-+-.++|.|..-|..++-..|+.|...+|.|...-+..+..-.+++-..+...-.|+..+
T Consensus 239 ~~~~he~i~~L~---~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 239 KIKYHELILELW---RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred hhHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 111222222221 13345566788888888999999999999999999988888555555577888888888899998
Q ss_pred hHHH
Q 002638 303 VRDS 306 (898)
Q Consensus 303 VRD~ 306 (898)
||=.
T Consensus 316 vR~~ 319 (1266)
T KOG1525|consen 316 VRME 319 (1266)
T ss_pred hhhh
Confidence 8854
No 192
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.95 E-value=31 Score=37.08 Aligned_cols=189 Identities=12% Similarity=0.069 Sum_probs=105.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH
Q 002638 89 NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (898)
Q Consensus 89 ~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~ 168 (898)
...++......+.+|..+|. | .- +..+.++..|......+...++..+...+..+-..= . ..+ .+|+
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~-~--~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~---~-----r~f-~~L~ 77 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLAC-H--KN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN---D-----RHF-PFLQ 77 (234)
T ss_pred CCCChHHHHHHHHHHHHHhc-c--Cc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC---c-----hHH-HHHH
Confidence 34456556666666655554 2 22 556667777777777777766544444333333222 1 223 3555
Q ss_pred HHHHHH----------hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhcc
Q 002638 169 PLFEAM----------MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVG 237 (898)
Q Consensus 169 pL~eaL----------~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLL-ks~~~kaK~alL~aIgSLA~vG 237 (898)
+++..+ .+.....+.+.+.++..+|..-++ +-..+++.+..+| ++...-+++.++++|.++-...
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 555541 123556778889999999987655 5567888889999 6777778888999999886422
Q ss_pred -ccCcccHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhhcC
Q 002638 238 -AIAPQSLEPLLQSIHECLGS-TDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACRFD 298 (898)
Q Consensus 238 -a~~~pyld~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~LE~~RfD 298 (898)
-.+.... ..|...|.. ....+=+..|+.+.-+....- +...-+...++..+=.....
T Consensus 154 vvd~~s~w----~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~ 214 (234)
T PF12530_consen 154 VVDFYSAW----KVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSS 214 (234)
T ss_pred hccHHHHH----HHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccc
Confidence 1222222 333333333 233343333333332222221 34445567777766433333
No 193
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.89 E-value=0.39 Score=38.48 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=30.9
Q ss_pred HHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 002638 102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSI 144 (898)
Q Consensus 102 LLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tL 144 (898)
+|+.+++.-+..+. .+.|+..|.++|.|+++.||.||.+.|
T Consensus 2 ~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35555555544443 358899999999999999999998764
No 194
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=89.60 E-value=48 Score=38.73 Aligned_cols=218 Identities=11% Similarity=0.083 Sum_probs=135.0
Q ss_pred CCChhhHHHHHHHHHHHHHHhch-hchhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhH
Q 002638 90 DPKPAVKKESVRLLALVCELHSE-LTSTHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (898)
Q Consensus 90 s~k~~vRKeAIlLLG~IAEg~gd-~I~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL 167 (898)
++.|++-.-+..+|-...+.... ....|+. +.+-.++..|.-+|+.-|+....++.++-...... -.-....+-
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~----r~~Ir~~i~ 176 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL----RSFIRKSIN 176 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT----HHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHH
Confidence 44577767766666666655442 2233444 77888999999999999999999999987776332 011222233
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHhccccCcccH
Q 002638 168 KPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLSNQNFMA-KASLLPVVGSLSQVGAIAPQSL 244 (898)
Q Consensus 168 ~pL~eaL~eq-nk~VQegAasALAkiIE~a~d~~-~~yL~~LlPRLlkLLks~~~ka-K~alL~aIgSLA~vGa~~~pyl 244 (898)
.-|.+.+.+. ....-.-...-|..++.+-..+. .++...+.--|+++.+.+++.. ...+..|+..++. --+...
T Consensus 177 ~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~ 253 (409)
T PF01603_consen 177 NIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLA 253 (409)
T ss_dssp HHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGH
T ss_pred HHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhH
Confidence 3344444333 33333335555666666533333 3466667777778888876553 4567777777763 334556
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 002638 245 EPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI 317 (898)
Q Consensus 245 d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~L 317 (898)
..++..|+..---.+..---.-++-|..|....+ +.|......+.+.+-.|-.-..- .+|.+||.+|..-
T Consensus 254 ~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~---qVAErAl~~w~n~ 324 (409)
T PF01603_consen 254 EPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHF---QVAERALYFWNNE 324 (409)
T ss_dssp HHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSH---HHHHHHHGGGGSH
T ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHCCH
Confidence 6777777777555555555566677777887777 77888888888888777766666 5788899999754
No 195
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.56 E-value=30 Score=43.74 Aligned_cols=222 Identities=16% Similarity=0.134 Sum_probs=124.9
Q ss_pred CChhHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH-HHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQTLS--------QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIIS 123 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~--------pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp-kIL~ 123 (898)
+|.-.+-.|+.+|=+++.-.. -+.|.+.|-.|+.. ..+.-.--.|+++|..+++.++..+.-.+. ..+|
T Consensus 180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIP 257 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIP 257 (1051)
T ss_pred CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhhccchhheeecccchH
Confidence 466566677777766554222 22233334444322 234566778999999999999987543222 3678
Q ss_pred HHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638 124 HIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVV 202 (898)
Q Consensus 124 ~IlrrLkDpD-s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~ 202 (898)
.++.+|.--+ --|-..|..++--|++.=-+.....+ -|-..+..|.-=.-.+|-.|...-+.+|..++...-.
T Consensus 258 vl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG------~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~ 331 (1051)
T KOG0168|consen 258 VLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAG------ALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH 331 (1051)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 8888876654 35666777777666654322111000 1111222222225678888888888999888666667
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH-----HHHHHHHhhCCC----CHHHHHHHHHHHHHH
Q 002638 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP-----LLQSIHECLGST----DWATRKAAADALSAL 273 (898)
Q Consensus 203 yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~-----lLp~L~e~Lsdd----DW~vRKaA~EaL~sL 273 (898)
|+-..+|-|..+|.+.+-|.-....-|+..++..-+..+.-++. ++.-+.+.|.-. .-.+--.++.+|..+
T Consensus 332 ~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m 411 (1051)
T KOG0168|consen 332 FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM 411 (1051)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence 88888999999999877765555555555555311111222222 222233333221 122344556666666
Q ss_pred HHhcchHHH
Q 002638 274 ALHSSNLVI 282 (898)
Q Consensus 274 A~avge~L~ 282 (898)
+...+..|.
T Consensus 412 sS~~pl~~~ 420 (1051)
T KOG0168|consen 412 SSGSPLLFR 420 (1051)
T ss_pred ccCChHHHH
Confidence 666554433
No 196
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=21 Score=40.90 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=105.0
Q ss_pred hhhHHH---HHHHHHHHHHH-hchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchh----HH
Q 002638 93 PAVKKE---SVRLLALVCEL-HSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTV----VG 164 (898)
Q Consensus 93 ~~vRKe---AIlLLG~IAEg-~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~----~~ 164 (898)
-..|+- |+.+|..+-.. ++-.+. |.++|-+.++|..+|..|..-+|..||++.+.+ +. ....++ -.
T Consensus 54 enhrekttlcVscLERLfkakegahla---pnlmpdLQrGLiaddasVKiLackqigcilEdc-Dt--naVseillvvNa 127 (524)
T KOG4413|consen 54 ENHREKTTLCVSCLERLFKAKEGAHLA---PNLMPDLQRGLIADDASVKILACKQIGCILEDC-DT--NAVSEILLVVNA 127 (524)
T ss_pred ccccchhhhHHHHHHHHHhhccchhhc---hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcC-ch--hhHHHHHHHhhh
Confidence 345666 55555544332 222344 556999999999999999999999999999988 21 111111 34
Q ss_pred hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh---cCCC-CchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 002638 165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC---ASDP-PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA 240 (898)
Q Consensus 165 ~lL~pL~eaL~eqnk~VQegAasALAkiIE~---a~d~-~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~ 240 (898)
.+++.++.+++..+-.|-.+|.-.+..+--. +.-. ..+.++.+--+-+.+-- +.-+|.-.|++|--++.+....
T Consensus 128 eilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc--ndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC--NDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHH
Confidence 6789999999888888888887777665432 1100 01223332222111111 1223444566665555443221
Q ss_pred cccHH--HHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc
Q 002638 241 PQSLE--PLLQSIHECLGS-TDWATRKAAADALSALALHSS 278 (898)
Q Consensus 241 ~pyld--~lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg 278 (898)
..|.. .++.-|..-|+. +|.-+|...+|....++....
T Consensus 206 aneckkSGLldlLeaElkGteDtLVianciElvteLaeteH 246 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH 246 (524)
T ss_pred HhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh
Confidence 12221 244444444555 788889999999998887655
No 197
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=4 Score=50.30 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=98.6
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHHHhccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNGK 155 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilr-rLkDpDs~VR~Ac~~tLG~LA~~lik~~ 155 (898)
..+|+.-+. .+.+|..|..++..++..=-|-+.. +++..++. ...|++--||.||+-+||-+.- +
T Consensus 520 Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl~---~-- 585 (929)
T KOG2062|consen 520 ADPLIKELL---RDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLF---R-- 585 (929)
T ss_pred hHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeEe---c--
Confidence 444444443 4668899999888776554444432 11222222 3679999999999998884321 2
Q ss_pred ccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH-
Q 002638 156 EENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL- 233 (898)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL- 233 (898)
-+..++..++.|.+ .|++|..|||+||.-+|-+.+.. + -+.-|-++.+++.--+|..++-+++-|
T Consensus 586 -------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~--e----Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 586 -------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK--E----AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred -------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--H----HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 13456667777755 59999999999999999865432 2 223334444666444555444444433
Q ss_pred HhccccCcccHHHHHHHHHHhhCC--CCHHHHHHH
Q 002638 234 SQVGAIAPQSLEPLLQSIHECLGS--TDWATRKAA 266 (898)
Q Consensus 234 A~vGa~~~pyld~lLp~L~e~Lsd--dDW~vRKaA 266 (898)
++-....-|-+..+...+.+...+ +|-.++..|
T Consensus 653 ~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GA 687 (929)
T KOG2062|consen 653 IQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGA 687 (929)
T ss_pred HhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 444445556677777777776665 444444333
No 198
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.50 E-value=1.9 Score=44.64 Aligned_cols=98 Identities=13% Similarity=0.239 Sum_probs=77.0
Q ss_pred hchhhHHHHHHHHHHhhcCCC------------------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638 113 LTSTHVTKIISHIVKRLKDSD------------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 113 ~I~PhLpkIL~~IlrrLkDpD------------------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL 174 (898)
.+.|||+.|+|.|...+.=.. -.+|.+|-+++-++...+.... .+..|+..+...|
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL 75 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGL 75 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhc
Confidence 578999999999998765432 4789999999999988763321 2667888888888
Q ss_pred hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002638 175 MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN 217 (898)
Q Consensus 175 ~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks 217 (898)
.| ...++.-++.-|.+++...+......|+.|++.|-+.|+.
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 88 8899999999999999988776667788899999988853
No 199
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=89.30 E-value=2.9 Score=40.17 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhc-cccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 204 FQKLCARICKLLSNQN----FMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 204 L~~LlPRLlkLLks~~----~kaK~alL~aIgSLA~v-Ga~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
+=-|+.++-..+.+.+ +.-|..++.+|+-++.+ |.....+..++|.+|...|..+ .+|..|++|...+...+.
T Consensus 9 ~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 9 FLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHHhCC
Confidence 3346777777777654 33466788899998874 3666677788888898888764 599999999999999999
Q ss_pred -hHHHhhHHHHHHHHH
Q 002638 279 -NLVIDGATSTLTVLE 293 (898)
Q Consensus 279 -e~L~Py~~~~I~~LE 293 (898)
+.+.|.+++++-++.
T Consensus 87 ~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 87 EEELGPLLDQIFAAIL 102 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 778888888877654
No 200
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=24 Score=44.57 Aligned_cols=171 Identities=15% Similarity=0.152 Sum_probs=109.9
Q ss_pred CChhHHHHHHHHHHHHHhcCCCC--------CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh--hHHHHH
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQE--------SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST--HVTKII 122 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe--------~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P--hLpkIL 122 (898)
..-|..-.|+.+|--+.+-||+. .+|.|+.-|+. + +.--+=+.++.+|..|.+.|+..+.. .|.-++
T Consensus 224 ~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~-I--eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L 300 (1051)
T KOG0168|consen 224 HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT-I--EYIDVAEQSLQALEKISRRHPKAILQAGALSAVL 300 (1051)
T ss_pred ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-h--hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH
Confidence 56788888998888888877632 36666655542 1 23346788999999999999987542 333333
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC--
Q 002638 123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPP-- 200 (898)
Q Consensus 123 ~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~-- 200 (898)
.|+ .=-...++..|.-+++..+..+..+.+ .++-+.||.|...|..+++.+-+.+|.||.+++|..-..+
T Consensus 301 syl----DFFSi~aQR~AlaiaaN~Cksi~sd~f----~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~k 372 (1051)
T KOG0168|consen 301 SYL----DFFSIHAQRVALAIAANCCKSIRSDEF----HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDK 372 (1051)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHhcCCCccc----hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHH
Confidence 322 112235566666666666666633322 5677888888888888999999999999999999863221
Q ss_pred -ch-hHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHH
Q 002638 201 -VV-AFQKLCARICKLLSNQ----NFMAKASLLPVVGSLS 234 (898)
Q Consensus 201 -~~-yL~~LlPRLlkLLks~----~~kaK~alL~aIgSLA 234 (898)
.. +-+.|+.+...+|.-. +...+..++..+..+.
T Consensus 373 Ldql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~ms 412 (1051)
T KOG0168|consen 373 LDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMS 412 (1051)
T ss_pred HHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHc
Confidence 12 2234667777777533 2233445455554443
No 201
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.27 E-value=31 Score=46.95 Aligned_cols=203 Identities=16% Similarity=0.160 Sum_probs=128.9
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH-HHHHHHHHHHHHHHHhcccccCCc
Q 002638 82 NCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM-KEACRDSIGSLSKLYLNGKEENNG 160 (898)
Q Consensus 82 s~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V-R~Ac~~tLG~LA~~lik~~~e~~~ 160 (898)
.++.......+|..|=.+..+++.++-..++ .|++..+..++++.|++.+..| |---.-++|.|-++. +.-..+
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv---gs~~s~ 953 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV---GSIGSG 953 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc---cCCCCc
Confidence 3334445678899999988888888876665 4677888999999999976544 666677788888877 322234
Q ss_pred hhHHhhHHHHHHHHhcC-CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC-CchhhHH--HHHHHHH-----
Q 002638 161 TVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSN-QNFMAKA--SLLPVVG----- 231 (898)
Q Consensus 161 ~~~~~lL~pL~eaL~eq-nk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks-~~~kaK~--alL~aIg----- 231 (898)
++...-+..|+....|. .|.||.-+..||+-+++........|....+--+.++|-+ +...+.. ..=.|.+
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 55555555666666554 6699999999999999987666556666555555555543 4333221 1111111
Q ss_pred -HHH-hccccCcccH---------HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-----hHHHhhHHHHH
Q 002638 232 -SLS-QVGAIAPQSL---------EPLLQSIHECLGSTDWATRKAAADALSALALHSS-----NLVIDGATSTL 289 (898)
Q Consensus 232 -SLA-~vGa~~~pyl---------d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-----e~L~Py~~~~I 289 (898)
.++ .+|....+.. ..++-...=.++++|.-.-.+|+.||-.+...-+ +.|.+-+..+|
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHh
Confidence 333 2342222222 2222222223677788888999999999988877 44555444433
No 202
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=89.13 E-value=9.8 Score=52.84 Aligned_cols=263 Identities=12% Similarity=0.115 Sum_probs=143.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC---CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhh
Q 002638 41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQTL---SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTH 117 (898)
Q Consensus 41 LK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L---~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~Ph 117 (898)
+.+.+...+.-. |-++..+|...|-.++.-. .++.+..-..++.+-..+..-..|-+|+.+++..+.-.+....|+
T Consensus 94 ~~n~l~~l~~~~-~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~ 172 (2341)
T KOG0891|consen 94 LANYLRYLLPSN-DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPY 172 (2341)
T ss_pred HHHHHHHhhccC-ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHH
Confidence 333333333333 6667777777666666432 122233333444333333334466789999999999999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHH-HH-----HHHHHHH
Q 002638 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQ-SG-----AAMCMAK 191 (898)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQ-eg-----AasALAk 191 (898)
+++++..|...+.|+++.+|..||.++......+.+.+ ....+..+..+...-+.... .+ +...+..
T Consensus 173 ~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~-------~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e 245 (2341)
T KOG0891|consen 173 VNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE-------AKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNE 245 (2341)
T ss_pred HHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc-------chhhhHHHHHHHHhccccccchHHHhhhHHHHHHH
Confidence 99999999999999999999999999998887774322 11122233333322211111 11 1111111
Q ss_pred HHHhcCCCCchhHHHHHHHHH--HHhcCCchhhHHHHHHHHHHHHhcc-ccC-cccHHHHHHHHHHhhCCCCHHHHHHHH
Q 002638 192 MVECASDPPVVAFQKLCARIC--KLLSNQNFMAKASLLPVVGSLSQVG-AIA-PQSLEPLLQSIHECLGSTDWATRKAAA 267 (898)
Q Consensus 192 iIE~a~d~~~~yL~~LlPRLl--kLLks~~~kaK~alL~aIgSLA~vG-a~~-~pyld~lLp~L~e~LsddDW~vRKaA~ 267 (898)
+..... .....++..+-+.. +.+++... ...+..-+.-++... ..| ..|+...|..++.++...+ -.+.
T Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~~~~lk~~~i--~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~~~ 318 (2341)
T KOG0891|consen 246 LLRISD-PFLEKYDSTCVRQAKGKLLKSIVI--RMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK----TRAF 318 (2341)
T ss_pred HHHHHH-HHHHhhHHHHHHHHHHHHhccccH--HHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc----hhHH
Confidence 111111 11111222222222 22232222 212222222232211 111 3677777777777666433 6788
Q ss_pred HHHHHHHHhcchHHHhhHHHHHHHHH-hhhcC-CChhhHHHHHHHHHHHHHhh
Q 002638 268 DALSALALHSSNLVIDGATSTLTVLE-ACRFD-KIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 268 EaL~sLA~avge~L~Py~~~~I~~LE-~~RfD-KvKpVRD~A~eALelWK~La 318 (898)
..|+.||.+++..+.||...+...+. ..+.+ ....-|+.....|..|...+
T Consensus 319 ~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a 371 (2341)
T KOG0891|consen 319 VSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASA 371 (2341)
T ss_pred HHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhc
Confidence 89999999999999999877555443 22211 11113356666777766655
No 203
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.10 E-value=28 Score=42.57 Aligned_cols=143 Identities=10% Similarity=0.143 Sum_probs=92.3
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH
Q 002638 85 YESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG 164 (898)
Q Consensus 85 ~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~ 164 (898)
+...+..-..+||.+-.++... ..+.....+-+++..|+..=+.|. +-+-...-+.++..+.....+ .+.+.+.
T Consensus 17 f~k~Q~s~aGhrk~~a~l~~~~---t~~~f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~dp-eg~~~V~ 90 (885)
T COG5218 17 FNKIQQSSAGHRKSLAELMEML---TAHEFSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPDDP-EGEELVA 90 (885)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH---HHHhhHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCCCh-hhhHHHH
Confidence 3444445677899888887766 223444455566666666655443 333344455666665533222 2346666
Q ss_pred hhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002638 165 LFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL 233 (898)
Q Consensus 165 ~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL 233 (898)
.++.-++..+..++++|.--.|.-|+.+.++.+..+....+.|+.+|.+-+=+.-.-+|-.++-|+.-+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 677777777778999999999999999999988776667777777777665544444555556666655
No 204
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.07 E-value=39 Score=42.06 Aligned_cols=226 Identities=17% Similarity=0.182 Sum_probs=134.6
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCc
Q 002638 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNG 160 (898)
Q Consensus 81 Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~ 160 (898)
++-|+-.. +....+|+.+-++|=.+-+..+|.+.|- .-..-|+..|.|.+=.|--|+...|-.|+.+.-+.. .
T Consensus 151 I~KlLvS~-~~~~~vkqkaALclL~L~r~spDl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y---k- 223 (938)
T KOG1077|consen 151 IPKLLVSG-SSMDYVKQKAALCLLRLFRKSPDLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY---K- 223 (938)
T ss_pred hHHHHhCC-cchHHHHHHHHHHHHHHHhcCccccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH---h-
Confidence 33444333 3346677777777767888888887651 124456667888887776677666666666551110 0
Q ss_pred hhHHhhHHHHHHHHhc-------------CCHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhc----CCchh-
Q 002638 161 TVVGLFVKPLFEAMME-------------QNKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARICKLLS----NQNFM- 221 (898)
Q Consensus 161 ~~~~~lL~pL~eaL~e-------------qnk~VQegAasALAkiIE~a~d~~-~~yL~~LlPRLlkLLk----s~~~k- 221 (898)
.-++..+..|...... ++|=.|.-.+..|... .-..|.. ..-|..++.+++...+ +.+.+
T Consensus 224 ~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~ 302 (938)
T KOG1077|consen 224 TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQH 302 (938)
T ss_pred hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHh
Confidence 0112222222221111 3566666666655544 1111111 1224444444444443 22222
Q ss_pred --hHHH-HHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHHHHhhh
Q 002638 222 --AKAS-LLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLTVLEACR 296 (898)
Q Consensus 222 --aK~a-lL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~LE~~R 296 (898)
++.+ +.++|+-++.. +.-+..+...+..|.++|++....+|=-|+|.+..|+.... +.+.-|.+.+|..|.
T Consensus 303 ~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk--- 378 (938)
T KOG1077|consen 303 SNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK--- 378 (938)
T ss_pred hhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc---
Confidence 4443 44555544322 34566777888899999999999999999999999999876 778877777777664
Q ss_pred cCCChhhHHHHHHHHHHHHHhhcCC
Q 002638 297 FDKIKPVRDSMNEALQLWKKIAGKV 321 (898)
Q Consensus 297 fDKvKpVRD~A~eALelWK~La~~~ 321 (898)
.+++-.||. .|+++.=.+++++
T Consensus 379 terDvSirr---ravDLLY~mcD~~ 400 (938)
T KOG1077|consen 379 TERDVSIRR---RAVDLLYAMCDVS 400 (938)
T ss_pred cccchHHHH---HHHHHHHHHhchh
Confidence 466766665 5888888899773
No 205
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.99 E-value=37 Score=39.60 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=69.8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002638 177 QNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL 255 (898)
Q Consensus 177 qnk~VQegAasALAkiIE~a~d-~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~L 255 (898)
.|..-|..-..=|..+++..+. ....+...|+.++.+++.++|+++=..++.....-.-+ ..+..+-..++|.++..|
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li~~~~~~i~p~i~~~L 345 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLISQNSRVILPIIFPAL 345 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHHHCTHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHHHhChHHHHHHHHHHH
Confidence 4666666666666777765432 23456778999999999999999766555543321100 123455667777777665
Q ss_pred CC---C--CHHHHHHHHHHHHHHHHhcchHHHh
Q 002638 256 GS---T--DWATRKAAADALSALALHSSNLVID 283 (898)
Q Consensus 256 sd---d--DW~vRKaA~EaL~sLA~avge~L~P 283 (898)
.. . +..+|..|+.+|..+...-++.|..
T Consensus 346 ~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 346 YRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp SSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 43 2 3459999999999999988886664
No 206
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=88.94 E-value=1.1e+02 Score=42.21 Aligned_cols=256 Identities=13% Similarity=0.086 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHhcC-CCCC----------HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHH
Q 002638 57 THQIAIEDLEKTIQTL-SQES----------LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHI 125 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L-~pe~----------Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~I 125 (898)
.+-.|+..|.+++..+ .-+. |.+|...+. .+....+|+-.+.++..+...+++.+..=+.-|+..+
T Consensus 1153 va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~---~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076 1153 IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMR---KSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 4445555555766543 2211 444443333 3456789999999999999999999998999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHH----HHhc-C--
Q 002638 126 VKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKM----VECA-S-- 197 (898)
Q Consensus 126 lrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAki----IE~a-~-- 197 (898)
-....|....+=..+-+++..+....+..........+..++..|.+-... .+.++-..|..-|..+ .+.. .
T Consensus 1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 999999988777788888887776654311100012344444444333321 1222222333333322 1110 0
Q ss_pred --------------------CC-----C----chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hccccCcc-----
Q 002638 198 --------------------DP-----P----VVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS-QVGAIAPQ----- 242 (898)
Q Consensus 198 --------------------d~-----~----~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA-~vGa~~~p----- 242 (898)
.. . ..+-=+|+-.|..+..++...+|..+|..+-.+. .-|..|.+
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~ 1389 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWER 1389 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 00 0 0122256677777777777888888777765554 34555543
Q ss_pred cHHHHHHHHHHhhCC------------------------CCHH--HHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhh
Q 002638 243 SLEPLLQSIHECLGS------------------------TDWA--TRKAAADALSALALHSSNLVIDGATSTLTVLEACR 296 (898)
Q Consensus 243 yld~lLp~L~e~Lsd------------------------dDW~--vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~R 296 (898)
.+..+|-+|++.+.. ..|- +=..|+..|..|-...=+.+.+.+++++..|..|-
T Consensus 1390 if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci 1469 (1780)
T PLN03076 1390 VFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFI 1469 (1780)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655421 1252 33333333333333333666677888899999998
Q ss_pred cCCChhhHHHHHHHHHHHHHhh
Q 002638 297 FDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 297 fDKvKpVRD~A~eALelWK~La 318 (898)
....+. .|.-.+...+.+-
T Consensus 1470 ~q~n~~---la~ig~~~l~~li 1488 (1780)
T PLN03076 1470 KRPHQS---LAGIGIAAFVRLM 1488 (1780)
T ss_pred cCchHH---HHHHHHHHHHHHH
Confidence 887773 4444444444444
No 207
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.86 E-value=13 Score=40.77 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=105.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHH
Q 002638 171 FEAMMEQNKGVQSGAAMCMAKMVECASD--PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLL 248 (898)
Q Consensus 171 ~eaL~eqnk~VQegAasALAkiIE~a~d--~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lL 248 (898)
=+.|.+.+..+.+.|..+|+.+++..+. +...-++.|+.-++.-|.+... +..+ +.++.+++............++
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKNFSPESAVKIL 82 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcCCChhhHHHHH
Confidence 3456677888999999999999998753 2234566677777777754333 3444 7888888754444455566777
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH-HHHhhhcCCChhhHHHHHHHHHHHHHhhcCCC
Q 002638 249 QSIHECLGS--TDWATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQLWKKIAGKVD 322 (898)
Q Consensus 249 p~L~e~Lsd--dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~-~LE~~RfDKvKpVRD~A~eALelWK~La~~~d 322 (898)
..+++.... --...|..+.+.|..+.....+.+...-...|. +++.+...|++ .-...++++++.+...++
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP---RnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP---RNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHhcc
Confidence 777765433 346689999999999999887777655555555 56677788999 677789999999987765
No 208
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.42 E-value=11 Score=53.47 Aligned_cols=274 Identities=15% Similarity=0.114 Sum_probs=160.7
Q ss_pred HhHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHhc----CC-CCC------HHHHHHHHhhhcCCCChhhHHHHHHH
Q 002638 36 LAMVEMKQKILTSLSKL--ADRDTHQIAIEDLEKTIQT----LS-QES------LPMLLNCLYESSNDPKPAVKKESVRL 102 (898)
Q Consensus 36 ~~~~eLK~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~----L~-pe~------Lp~fLs~L~es~~s~k~~vRKeAIlL 102 (898)
.-+++-+-.+=.+...+ .+-.....+...|..+-.. |+ ++. +..+++-+..--.++.|+.|..++..
T Consensus 977 ~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~g 1056 (3550)
T KOG0889|consen 977 KKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNG 1056 (3550)
T ss_pred ccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCce
Confidence 33344343333333333 4566888888888777653 22 222 33444444444467889999999999
Q ss_pred HHHHHHHhchh-chhhHHHHHHHHHHhhcCCChHHHH----HHHHHHHHHHHHHhcc-ccc-CCchhHHhhHHHHHHHHh
Q 002638 103 LALVCELHSEL-TSTHVTKIISHIVKRLKDSDSGMKE----ACRDSIGSLSKLYLNG-KEE-NNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 103 LG~IAEg~gd~-I~PhLpkIL~~IlrrLkDpDs~VR~----Ac~~tLG~LA~~lik~-~~e-~~~~~~~~lL~pL~eaL~ 175 (898)
++.+.+.-... +..+...++..+.-.|+|-...+-. .|-+.+-.+.+.+... ..+ ........++.++.--|.
T Consensus 1057 I~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 1136 (3550)
T KOG0889|consen 1057 IKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF 1136 (3550)
T ss_pred eeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 99998887743 6788889999999999997654433 3444444444443321 111 111446778888888888
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCCCCc----hhHHHH-HHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHH-
Q 002638 176 EQNKGVQSGAAMCMAKMVECASDPPV----VAFQKL-CARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQ- 249 (898)
Q Consensus 176 eqnk~VQegAasALAkiIE~a~d~~~----~yL~~L-lPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp- 249 (898)
.+|..|-+.+..+|..+-|....... ++-+.| .|.+.+.|.+..+.+.-..++++.=.+..+..+-.+.+.+.-
T Consensus 1137 npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l 1216 (3550)
T KOG0889|consen 1137 NPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRL 1216 (3550)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHH
Confidence 99999999999999999998743322 222222 344444444444444444555554444444222222222221
Q ss_pred --HHHHhhCCC------------------CHHHHHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhhhcCCChhhHHH
Q 002638 250 --SIHECLGST------------------DWATRKAAADALSALALHSS---NLVIDGATSTLTVLEACRFDKIKPVRDS 306 (898)
Q Consensus 250 --~L~e~Lsdd------------------DW~vRKaA~EaL~sLA~avg---e~L~Py~~~~I~~LE~~RfDKvKpVRD~ 306 (898)
.+...+..+ --.+|-++.++|+.-....+ ....+|...+|.++-...+-+-+..-++
T Consensus 1217 ~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~ 1296 (3550)
T KOG0889|consen 1217 KRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEV 1296 (3550)
T ss_pred HHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHH
Confidence 222222211 12358888888888766666 4577788888877765555555544454
Q ss_pred HHH
Q 002638 307 MNE 309 (898)
Q Consensus 307 A~e 309 (898)
+.+
T Consensus 1297 ~~~ 1299 (3550)
T KOG0889|consen 1297 ALE 1299 (3550)
T ss_pred HHH
Confidence 433
No 209
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=88.37 E-value=3.6 Score=50.43 Aligned_cols=187 Identities=17% Similarity=0.128 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE 194 (898)
.+|-.+|+|+|++.++-+|-.||-.-..-+-.+..++.++ .+-..+++-+...+.+.|+.+.+-..-|++-++.
T Consensus 325 ~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~------~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 325 EEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ------ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH------hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 3477889999999999999999999999888888888543 3345678888888899999988877777766665
Q ss_pred hcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHH-HHHhhCCCCHHHHHHHHHHHHHH
Q 002638 195 CASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQS-IHECLGSTDWATRKAAADALSAL 273 (898)
Q Consensus 195 ~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~-L~e~LsddDW~vRKaA~EaL~sL 273 (898)
....- ..-..|+-.|.++-.+.+..+|.---.|+|-++..- .+..-..++.. ....+.|+-...|+++...|.+.
T Consensus 399 kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l--~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 399 KLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL--AASVRKRVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred hhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccccc--chhhhccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 43221 111234444444334444445543334444432110 00001222222 22357777788899988887655
Q ss_pred HHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 002638 274 ALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 274 A~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALel 313 (898)
-.... ...-..+++..|.-...|..+-||+.|..+++-
T Consensus 475 ~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 475 QEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccccc--hhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 44443 112346777778888889999999985555443
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.02 E-value=12 Score=48.09 Aligned_cols=105 Identities=11% Similarity=0.101 Sum_probs=78.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHhchhc-hhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh
Q 002638 89 NDPKPAVKKESVRLLALVCELHSELT-STHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF 166 (898)
Q Consensus 89 ~s~k~~vRKeAIlLLG~IAEg~gd~I-~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l 166 (898)
+...+.+|-.|...|+.++.++.-.- .-.-..+|...+..|.| +++.+|+=+|-+||+|=+.+-..-.. ..-...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~---G~r~~A 643 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS---GRRDNA 643 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc---cccccH
Confidence 34456889999999999999977442 22234567889999999 58999999999999998877321000 011224
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 167 L~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
...|+..|.|+-+.|..+|.-||..++.+.
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 456777888999999999999999999863
No 211
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.46 E-value=61 Score=37.31 Aligned_cols=254 Identities=14% Similarity=0.139 Sum_probs=148.3
Q ss_pred CChhHHHHHHHHHHHHHhcCC--C------CCHHHHHHHHhhhcCC-------CChhhHHHHHHHHHHHHHHhc--hhc-
Q 002638 53 ADRDTHQIAIEDLEKTIQTLS--Q------ESLPMLLNCLYESSND-------PKPAVKKESVRLLALVCELHS--ELT- 114 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~--p------e~Lp~fLs~L~es~~s-------~k~~vRKeAIlLLG~IAEg~g--d~I- 114 (898)
+||+.+-=|...|..+.+..+ | +.++.|+.++..-... .+...-.+|+++||.+..... ..+
T Consensus 5 ~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~ 84 (372)
T PF12231_consen 5 SDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLS 84 (372)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCC
Confidence 466666666666666555432 1 1256666666544322 356677789999988864221 122
Q ss_pred hhhHHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc--CCHhHHHHHHHHHH
Q 002638 115 STHVTKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMA 190 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpDs--~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e--qnk~VQegAasALA 190 (898)
..+...++-+.+..|.++.. .+...+.++|. .+=+.+.. ........+...+..+.+ +...+..-+..++.
T Consensus 85 ~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~Q~f~~~~--~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPNSPKSICTHYLWCLS---DQKFSPKI--MTSDRVERLLAALHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cCCCCCcc--cchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 33455688888899988763 44444444443 11111110 011122223333333333 57788888999999
Q ss_pred HHHHhcCCCCch----hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH--------h-ccccC------cccHHHHHHHH
Q 002638 191 KMVECASDPPVV----AFQKLCARICKLLSNQNFMAKASLLPVVGSLS--------Q-VGAIA------PQSLEPLLQSI 251 (898)
Q Consensus 191 kiIE~a~d~~~~----yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA--------~-vGa~~------~pyld~lLp~L 251 (898)
++++..+..+.. .++.|++.++...+ ..+.++..+.....+. . +...+ ..|++.+...|
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k--~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L 237 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSAK--DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERL 237 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHH
Confidence 999988766554 35566666653322 3333332222111111 0 00111 14566677777
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHHHHhcchH-H--HhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhc
Q 002638 252 HECLGS-TDWATRKAAADALSALALHSSNL-V--IDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG 319 (898)
Q Consensus 252 ~e~Lsd-dDW~vRKaA~EaL~sLA~avge~-L--~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~ 319 (898)
.+.+.+ ++ =+.|.++-+.+...+|.. + -+|....+.+.+.|=...+..+|- +|+..|+.+-.
T Consensus 238 ~~mi~~~~~---~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~---~A~~aW~~liy 303 (372)
T PF12231_consen 238 KEMIKSKDE---YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI---QAFKAWRRLIY 303 (372)
T ss_pred HHHHhCcCC---cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH---HHHHHHHHHHH
Confidence 777777 33 245677877777777732 2 367899999999999999998886 49999999995
No 212
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=87.35 E-value=13 Score=46.35 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC
Q 002638 99 SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN 178 (898)
Q Consensus 99 AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn 178 (898)
|+.+|.++|+-..-...=+-..|++.+++.|...+..+.-.+...|..|+-+--... .-.-..++++|...+..++
T Consensus 269 ~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~----~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 269 AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD----EMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH----HHHHcCCHHHHHHHhcCCC
Confidence 555666777654432222346678888888887777777777777777764331100 0012237888888888888
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCCchh
Q 002638 179 KGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQNFM 221 (898)
Q Consensus 179 k~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~~~k 221 (898)
..++..+...|-.+..+..- -...+. .++|+|..+|++++++
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~-R~~mV~~GlIPkLv~LL~d~~~~ 387 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPEL-RSQMVSLGLIPKLVELLKDPNFR 387 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHH-HHHHHHCCCcHHHHHHhCCCchH
Confidence 88888888888877754311 111222 3778888888887654
No 213
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.34 E-value=3.6 Score=38.40 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHcCCChh--HHHHHHHHHHHHHhcCC-C-CCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhH
Q 002638 44 KILTSLSKLADRD--THQIAIEDLEKTIQTLS-Q-ESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHV 118 (898)
Q Consensus 44 rll~~L~KLsDrD--T~k~Aa~eLD~Ia~~L~-p-e~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhL 118 (898)
.+-.++..+.|.. .|.-|+..|.+++..-+ + ..++.++..+.....++++.+==.||..|..+|..+++.+.|.|
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L 82 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL 82 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence 3445666676555 89999999999998654 2 24888889888899999999999999999999999987655443
No 214
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.27 E-value=90 Score=39.12 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=107.0
Q ss_pred CCCCCcchhhhHhHHHHHHHHHHHHHcC---CC---hhHHHHHHHHHHHHHhcCCCCC--HHHHHHHHhhhcCCCChhhH
Q 002638 25 NASRSSSLSSHLAMVEMKQKILTSLSKL---AD---RDTHQIAIEDLEKTIQTLSQES--LPMLLNCLYESSNDPKPAVK 96 (898)
Q Consensus 25 ~~~~~~~~s~~~~~~eLK~rll~~L~KL---sD---rDT~k~Aa~eLD~Ia~~L~pe~--Lp~fLs~L~es~~s~k~~vR 96 (898)
++.++.-+++...+++.-++++.-+.+- .+ +......+-+.-.++-.++++. +...+..|.+.+.+.++..|
T Consensus 267 ~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiR 346 (938)
T KOG1077|consen 267 IYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIR 346 (938)
T ss_pred hCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccch
Confidence 3456667778888888888777766633 21 2244455556667777787544 88889999999888888888
Q ss_pred HHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 97 KESVRLLALVCELHSELTSTHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 97 KeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLk-DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
--++-.+-.+|.. +....-+.+=...|+..|+ ++|..||.-+++.+=.++..- ....++.-|++.|.
T Consensus 347 YLaLEsm~~L~ss--~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~----------Nak~IV~elLqYL~ 414 (938)
T KOG1077|consen 347 YLALESMCKLASS--EFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS----------NAKQIVAELLQYLE 414 (938)
T ss_pred hhhHHHHHHHHhc--cchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----------hHHHHHHHHHHHHh
Confidence 7666655555543 3333334444677888899 999999999999776665433 24567777888886
Q ss_pred cCCHhHHHHHHHHHHHHHHh
Q 002638 176 EQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 176 eqnk~VQegAasALAkiIE~ 195 (898)
..+...++-.+.=.|-+-|-
T Consensus 415 tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 415 TADYSIREEIVLKVAILAEK 434 (938)
T ss_pred hcchHHHHHHHHHHHHHHHH
Confidence 66666666555444444453
No 215
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=94 Score=39.23 Aligned_cols=244 Identities=17% Similarity=0.134 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHhcCCC-CC----HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc--hhchhhHHHHHHHHHHhh
Q 002638 57 THQIAIEDLEKTIQTLSQ-ES----LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRL 129 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~p-e~----Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~~IlrrL 129 (898)
.+..|++.+.++-..+.. .. +...+.|+. +-.-+++-+|-++|......-. +.+..|+|.+|..++..-
T Consensus 476 L~Srace~is~~eeDfkd~~ill~aye~t~ncl~----nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 476 LKSRACEFISTIEEDFKDNGILLEAYENTHNCLK----NNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh----cCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc
Confidence 566677777777655532 12 333344444 3446788888888887765432 557889999999999998
Q ss_pred cCCChHHHHHHHHH-HHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC------CHhHHHHHHHHH---HHHHHhcCCC
Q 002638 130 KDSDSGMKEACRDS-IGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ------NKGVQSGAAMCM---AKMVECASDP 199 (898)
Q Consensus 130 kDpDs~VR~Ac~~t-LG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq------nk~VQegAasAL---AkiIE~a~d~ 199 (898)
++-+..+-.-|.+. ++++++.+..=+.+-.+.....||+...+.+.+. ...-|.+|..-| ..++=.....
T Consensus 552 n~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~ 631 (970)
T COG5656 552 NTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENR 631 (970)
T ss_pred ccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccc
Confidence 88887777777765 5566666621122223345566666666666322 123344444333 3333332221
Q ss_pred C--chhHH-HHHHHHHHHhcCCc---------------hhhH--------------------------HHHHHHHHHHHh
Q 002638 200 P--VVAFQ-KLCARICKLLSNQN---------------FMAK--------------------------ASLLPVVGSLSQ 235 (898)
Q Consensus 200 ~--~~yL~-~LlPRLlkLLks~~---------------~kaK--------------------------~alL~aIgSLA~ 235 (898)
+ ..|+. .+.|-+--+|+|.. |..| .....++..++.
T Consensus 632 p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 632 PLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 1 12211 22333333333321 1111 112223333332
Q ss_pred cc----ccCcccHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH--hhhcCCChhhH
Q 002638 236 VG----AIAPQSLEPLLQSIHECLGSTDW--ATRKAAADALSALALHSS-NLVIDGATSTLTVLE--ACRFDKIKPVR 304 (898)
Q Consensus 236 vG----a~~~pyld~lLp~L~e~LsddDW--~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE--~~RfDKvKpVR 304 (898)
-| ...+-|...+...+..++.+++- .-+..+|+.+-.++...+ +.+..|++-.+.+.- -...|..++-+
T Consensus 712 yG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~s 789 (970)
T COG5656 712 YGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPAS 789 (970)
T ss_pred hCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchh
Confidence 22 12245555555556667777654 789999999999999999 588888887777665 34445444333
No 216
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.06 E-value=9.3 Score=46.16 Aligned_cols=114 Identities=13% Similarity=0.217 Sum_probs=79.1
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhh
Q 002638 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLF 166 (898)
Q Consensus 88 ~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~l 166 (898)
.++-+--+|++|+.+||.+|=.-.+. ++-++.-|.+ ..+.||...+.++|..+..- + ...
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~--------lv~tvelLs~shN~hVR~g~AvaLGiacag~---G--------~~~ 621 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDL--------LVGTVELLSESHNFHVRAGVAVALGIACAGT---G--------DKV 621 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcch--------hhHHHHHhhhccchhhhhhhHHHhhhhhcCC---c--------cHH
Confidence 34566789999999999986433332 3344555555 46899999999999766544 2 123
Q ss_pred HHHHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch
Q 002638 167 VKPLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF 220 (898)
Q Consensus 167 L~pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~ 220 (898)
.--+++.| -+.+.-|..+||.|++.|+=...+...+-...+.-+|..++.+.|-
T Consensus 622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 33444555 5778889999999999998666555556666777777777776543
No 217
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.98 E-value=4.8 Score=44.55 Aligned_cols=63 Identities=19% Similarity=0.449 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002638 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS 148 (898)
Q Consensus 74 pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA 148 (898)
|..++.+...|.+. ...+.||-+|..+||.|+. +.-+..|.+-++|+++.||.-|..++-.+-
T Consensus 217 ~~ai~~L~k~L~d~--~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDE--TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhhhHHHHHHHHhh--hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 33465555555543 4569999999999999987 566788888999999999999988876543
No 218
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.69 E-value=5.1 Score=49.23 Aligned_cols=152 Identities=15% Similarity=0.126 Sum_probs=101.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc--cCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc-CCC
Q 002638 123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE--ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA-SDP 199 (898)
Q Consensus 123 ~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~--e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a-~d~ 199 (898)
|.|.++|+-+.+.||.-|+..+-.+-... ++.. ++.+..+..=..-|...|.+.-+.|...|..-+.+++-.- .-.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~-dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIR-DPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 67888899999999998887654443322 2211 1111223333344556667888888877776666666432 112
Q ss_pred CchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 200 PVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 200 ~~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
+...+-+|+-+++--+.+. ...+|.+...+|.-++.. ....+.++.++|.|--.|.|..-.+|-++.|.|..|-..
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 2345667777776666554 345777778888776532 456788999999999999999999999999998876443
No 219
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=84.86 E-value=13 Score=45.41 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=91.8
Q ss_pred chhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 002638 114 TSTHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (898)
Q Consensus 114 I~PhLpkIL~-~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAki 192 (898)
+...+..++. +..++.+|....|-+-..-++|++-+.+..+ -..+..+++-||+-|.+....||.-||-.+-|+
T Consensus 523 ~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkah-----w~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKI 597 (1053)
T COG5101 523 FVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAH-----WSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKI 597 (1053)
T ss_pred HHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHH-----HHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHH
Confidence 3444444444 4567899999999999999999999999433 245677889999999999999999999999999
Q ss_pred HHhcCC--------CCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 002638 193 VECASD--------PPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 193 IE~a~d--------~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~ 235 (898)
++-++. ...+++..++..|-+...+..++-+-..+.+.|-++.
T Consensus 598 vqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIs 648 (1053)
T COG5101 598 VQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVIS 648 (1053)
T ss_pred HHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHh
Confidence 998732 1246888888888888888777767778888888764
No 220
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=77 Score=40.79 Aligned_cols=216 Identities=13% Similarity=0.144 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccC-CchhHHhhHHHHHHHHhcC
Q 002638 99 SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN-NGTVVGLFVKPLFEAMMEQ 177 (898)
Q Consensus 99 AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~-~~~~~~~lL~pL~eaL~eq 177 (898)
.+..+|.+|+.-|+...++|--.+=.++..+.++.+.|++++..++-+++..+--...+. ..+...-++.-|-..|..
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~- 646 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNT- 646 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhcc-
Confidence 455678888888877777776666677788999999999999999999998872110000 001111122222222210
Q ss_pred CHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh----------------------
Q 002638 178 NKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ---------------------- 235 (898)
Q Consensus 178 nk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~---------------------- 235 (898)
-.+-..+---|.-++...+....++++.++.-+++.++.-|-..-...+..+.+++.
T Consensus 647 -~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~ 725 (1014)
T KOG4524|consen 647 -SGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQ 725 (1014)
T ss_pred -CCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 000111222244455555555556666666666666653221111111111111100
Q ss_pred -----------------------------------c-c------c----------------------cCcccHHH---HH
Q 002638 236 -----------------------------------V-G------A----------------------IAPQSLEP---LL 248 (898)
Q Consensus 236 -----------------------------------v-G------a----------------------~~~pyld~---lL 248 (898)
+ | . ..++..+. +|
T Consensus 726 ~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~kIl 805 (1014)
T KOG4524|consen 726 STKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLKIL 805 (1014)
T ss_pred HHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHHHH
Confidence 0 0 0 00012222 22
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHH---HhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhc
Q 002638 249 QSIHECLGSTDWATRKAAADALSALA---LHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAG 319 (898)
Q Consensus 249 p~L~e~LsddDW~vRKaA~EaL~sLA---~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~ 319 (898)
.....+|++++..+|-.|+++|.... ....+.|-|.+...=..+-.|..+|++ =++++|++..-.++.
T Consensus 806 ~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~---L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 806 GRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDP---LIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCch---HHHHHHHHHHHHHHH
Confidence 23344688999999999999998743 333477778887777777778888888 455556666655553
No 221
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.53 E-value=61 Score=40.04 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhcC-----CCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhc-
Q 002638 44 KILTSLSKLADRDTHQIAIEDLEKTIQTL-----SQES---LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT- 114 (898)
Q Consensus 44 rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L-----~pe~---Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I- 114 (898)
.++.++.-..|-|-.+.|+..|..+.... +++. ..+++..+ .++...+...+ ||+++..-.++-
T Consensus 380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll----~dp~~~i~~~~---lgai~NlVmefs~ 452 (678)
T KOG1293|consen 380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL----MDPEIMIMGIT---LGAICNLVMEFSN 452 (678)
T ss_pred HHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh----hCcchhHHHHH---HHHHHHHHhhccc
Confidence 34445556689998888888887776543 1222 44444444 24555555544 555555544442
Q ss_pred --hhhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHH-HHhcCCHhHHHHHHHHHH
Q 002638 115 --STHVT-KIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE-AMMEQNKGVQSGAAMCMA 190 (898)
Q Consensus 115 --~PhLp-kIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~e-aL~eqnk~VQegAasALA 190 (898)
.-+|. -.+-.+..-+.|+++.+|..+.|++..++-.. ++.. ..+....+-..++. ...++++.||++++.-|-
T Consensus 453 ~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~-de~~--k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 453 LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC-DEEE--KFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-hHHH--HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22222 24567888899999999999999999887666 3211 11223333333333 347889999999999988
Q ss_pred HHHHhc
Q 002638 191 KMVECA 196 (898)
Q Consensus 191 kiIE~a 196 (898)
.++-+.
T Consensus 530 Nl~c~~ 535 (678)
T KOG1293|consen 530 NLTCNS 535 (678)
T ss_pred HhhcCc
Confidence 887654
No 222
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=84.40 E-value=7.5 Score=39.54 Aligned_cols=146 Identities=9% Similarity=0.103 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH--H
Q 002638 118 VTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV--E 194 (898)
Q Consensus 118 LpkIL~~IlrrLkDp-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI--E 194 (898)
-|.++..+++-|+-. ...+|..|..++|.|..- +|. ..+-......+.. .+.....+-.... .
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~----------~~k~~~~~~~~~~--~~~~~~~~~~~~l~~~ 73 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPY----------KHKSIQKSLDSKS--SENSNDESTDISLPMM 73 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcH----------HHhcccccCCccc--cccccccchhhHHhhc
Confidence 366777777777765 479999999999976531 110 0000000000000 0111111111111 1
Q ss_pred hcCCCCchh-HHHHHHHHHHHhcCCchh-hHHHHHHHHHHHHh-ccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002638 195 CASDPPVVA-FQKLCARICKLLSNQNFM-AKASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALS 271 (898)
Q Consensus 195 ~a~d~~~~y-L~~LlPRLlkLLks~~~k-aK~alL~aIgSLA~-vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~ 271 (898)
+......+| ....+..|+++|++++.. -..+++.+|-.++. .|....+|++.++|.++..+..-+..+|.....-|+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111122244 445778888899887543 23366777777764 454459999999999999988655588888888887
Q ss_pred HHHHhc
Q 002638 272 ALALHS 277 (898)
Q Consensus 272 sLA~av 277 (898)
.|...+
T Consensus 154 ~lv~iv 159 (160)
T PF11865_consen 154 DLVSIV 159 (160)
T ss_pred HHHHHh
Confidence 776654
No 223
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.29 E-value=22 Score=43.66 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHh--cccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYL--NGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~li--k~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI 193 (898)
.+-.....+.+..++| ..++.|+|.++-.+++-+- +.++ .-..+..||+..|.++.-.|+.++.+||..++
T Consensus 375 ~~~t~~~l~~~~~~kd--~~~~aaa~l~~~s~srsV~aL~tg~-----~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 375 ETTTESHLMCLPPIKD--HDFVAAALLCLKSFSRSVSALRTGL-----KRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred HHHHHHHHcccccccc--HHHHHHHHHHHHHHHHHHHHHHcCC-----ccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 3334444444555544 4588888888776666552 2222 13457788889999999999999999999988
Q ss_pred HhcCCCCchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002638 194 ECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADA 269 (898)
Q Consensus 194 E~a~d~~~~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~Ea 269 (898)
=+-.+.-..++. ..+.++..++.++.+-.|...+-++.-+.- .- ..+.++-+..+..|..+..|+||.+-..+.+.
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL 527 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 543333223443 367888999999988888887888777642 21 34677788888889999999999987777666
Q ss_pred HHHHHH
Q 002638 270 LSALAL 275 (898)
Q Consensus 270 L~sLA~ 275 (898)
|-.+..
T Consensus 528 lRNl~c 533 (678)
T KOG1293|consen 528 LRNLTC 533 (678)
T ss_pred HHHhhc
Confidence 655443
No 224
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=84.12 E-value=1.5 Score=34.09 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002638 121 IISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (898)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~ 149 (898)
.+|.+++.|+++++.|+..|+|+|+.|++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999873
No 225
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.11 E-value=8.2 Score=47.80 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=105.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002638 123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPV 201 (898)
Q Consensus 123 ~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~ 201 (898)
+.|...+.|.||.+|..-.-+++ ..++ +.. -...++.|+.. +.+.|-.|.-+|..||.=+|-..+
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~a--lAy~---GTg-----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---- 587 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLA--LAYV---GTG-----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---- 587 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHH--HHHh---ccC-----chhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence 45667788889999977665544 2222 211 12244444444 578899999999999887775333
Q ss_pred hhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchH
Q 002638 202 VAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNL 280 (898)
Q Consensus 202 ~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~ 280 (898)
..||+.+.+|... ++.+|..+--++|-. .+|.. ....+..|-....|..--+|..||=+++-|..-.-+.
T Consensus 588 ----~~~~s~V~lLses~N~HVRyGaA~ALGIa-CAGtG----~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 588 ----EQLPSTVSLLSESYNPHVRYGAAMALGIA-CAGTG----LKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred ----hhchHHHHHHhhhcChhhhhhHHHHHhhh-hcCCC----cHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 3678888888643 677776555555542 22311 1223333333345666779999999999999988899
Q ss_pred HHhhHHHHHHHHHhhhcCCCh
Q 002638 281 VIDGATSTLTVLEACRFDKIK 301 (898)
Q Consensus 281 L~Py~~~~I~~LE~~RfDKvK 301 (898)
+-|-...+.+-++..-.||.+
T Consensus 659 ~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred cCchHHHHHHHHHHHhhhhhh
Confidence 999999999999988889998
No 226
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=83.92 E-value=1.7 Score=40.58 Aligned_cols=55 Identities=5% Similarity=0.184 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002638 94 AVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (898)
Q Consensus 94 ~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~ 149 (898)
..|-.+++.|+.++..++-.+.+++|+||..+.+...| ...|+.++-.+++.+=+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999998 55788888888876644
No 227
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=83.89 E-value=23 Score=33.56 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhc--------CCChhhHHHHHHHHH
Q 002638 241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRF--------DKIKPVRDSMNEALQ 312 (898)
Q Consensus 241 ~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~Rf--------DKvKpVRD~A~eALe 312 (898)
..+...+|..|...|.+.+|.+--.|+..|-++....|+.|..++.+-.-..+-++| |....||+-+.+.++
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 456778899999999999999999999999999999998887776443322232222 335679999999999
Q ss_pred HHH
Q 002638 313 LWK 315 (898)
Q Consensus 313 lWK 315 (898)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 996
No 228
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=83.61 E-value=8.7 Score=39.87 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHhcCCCC-CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhh----c
Q 002638 56 DTHQIAIEDLEKTIQTLSQE-SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL----K 130 (898)
Q Consensus 56 DT~k~Aa~eLD~Ia~~L~pe-~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrL----k 130 (898)
+.|+.|++.|..+....... .+..|+.++..-+.+ ..-+|--|.+.|..++..++..+.++|..++..+-+.| +
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k 120 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLK 120 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCC
Confidence 58999999999999875433 388889999888877 89999999999999999999988887777777665555 5
Q ss_pred CCC--------hHHHHHHHHHHHHHHHHHhcccccCCch-hHHhhHHH
Q 002638 131 DSD--------SGMKEACRDSIGSLSKLYLNGKEENNGT-VVGLFVKP 169 (898)
Q Consensus 131 DpD--------s~VR~Ac~~tLG~LA~~lik~~~e~~~~-~~~~lL~p 169 (898)
+.. .....++..++..|...+. +. .... .|..|+..
T Consensus 121 ~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~--~~-~~~~~~~~~f~~~ 165 (169)
T PF08623_consen 121 ENAVKQEIEKQQELIRSVLRAVKALNSKIP--GA-ESSPNKWNEFVEW 165 (169)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHH-HSST--S--SSSH-HHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhCc--cc-ccCHHHHHHHHHH
Confidence 543 1223344445555544441 11 1222 56666544
No 229
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=83.56 E-value=27 Score=42.45 Aligned_cols=144 Identities=12% Similarity=0.188 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-CCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638 58 HQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (898)
Q Consensus 58 ~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~-s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V 136 (898)
...-+.+|-..+..|+.+ ...++..|+...- ..++..+++.+..|++++..++. |++.++..+++.+..+....
T Consensus 53 l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~ 127 (563)
T PF05327_consen 53 LIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSI 127 (563)
T ss_dssp HHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHH
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccc
Confidence 444555666666667665 7777888875432 34456677777888888877755 55666777777776655432
Q ss_pred H--------------HHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCC
Q 002638 137 K--------------EACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPP 200 (898)
Q Consensus 137 R--------------~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL--~eqnk~VQegAasALAkiIE~a~d~~ 200 (898)
. +.+-.+|..|.+.+ + .....+.+.|...+ ......++.+=...|-++++.++..-
T Consensus 128 ~~~~~~~~~~~~~~~~~vH~~L~~Il~lv---P-----~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~ 199 (563)
T PF05327_consen 128 AEWPGCPPEKRREIYERVHDALQKILRLV---P-----TSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELR 199 (563)
T ss_dssp HH---------------HHHHHHHHHHH----G-----GGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGH
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHc---C-----CCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHH
Confidence 2 23445555555554 1 11222333333333 23466788888888888888876665
Q ss_pred chhHHHHHHHHHHH
Q 002638 201 VVAFQKLCARICKL 214 (898)
Q Consensus 201 ~~yL~~LlPRLlkL 214 (898)
..+|.-++.||+++
T Consensus 200 ~~Il~lIi~rLi~i 213 (563)
T PF05327_consen 200 SDILSLIIERLIKI 213 (563)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888888876
No 230
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=83.41 E-value=40 Score=42.15 Aligned_cols=265 Identities=12% Similarity=0.107 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh
Q 002638 38 MVEMKQKILTSLSKL-ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST 116 (898)
Q Consensus 38 ~~eLK~rll~~L~KL-sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P 116 (898)
-.++-.++.-||..+ +..+-.+.++.+++-++. .|..++....+.. +.+...=+.|+.+|=++.---..-+.+
T Consensus 387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLId-----aL~~~iq~~i~~~-~~d~K~VENcvCilRNLSYrl~~Evp~ 460 (717)
T KOG1048|consen 387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLID-----ALLFSIQTAIQKS-DLDSKSVENCVCILRNLSYRLEAEVPP 460 (717)
T ss_pred cceeeehhhhhhccccchhHHHHHHHhhccchHH-----HHHHHHHHHHHhc-cccchhHHHHHHHHhhcCchhhhhcCH
Confidence 344555667788777 345555555555554443 1333333222222 233344466777776665433333544
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc----------cc--cc--CCc-hhHHhhHHHHHHHHh-cCCHh
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN----------GK--EE--NNG-TVVGLFVKPLFEAMM-EQNKG 180 (898)
Q Consensus 117 hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik----------~~--~e--~~~-~~~~~lL~pL~eaL~-eqnk~ 180 (898)
-..+.+..+-+...--.+. +.+|.+....-+ +. .. +.+ -..+.++++-+..|. ..|..
T Consensus 461 ~~~~~~~~~~~~~~~~~~~------~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~ 534 (717)
T KOG1048|consen 461 KYRQVLANIARLPGVGPPA------ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDN 534 (717)
T ss_pred hhhhHhhcccccccCCCcc------cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchH
Confidence 4444444333222211121 333333332211 10 00 000 235667777677774 46899
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc--ccCcccHHHHHHH
Q 002638 181 VQSGAAMCMAKMVECASDPPVVAF-------QKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG--AIAPQSLEPLLQS 250 (898)
Q Consensus 181 VQegAasALAkiIE~a~d~~~~yL-------~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG--a~~~pyld~lLp~ 250 (898)
++++++.||..+.-+... ...|+ ++.+|-|+.+|.+++..+..++..+++=++. +- ..+ ....|+-
T Consensus 535 TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li---gk~a~~~ 610 (717)
T KOG1048|consen 535 TLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI---GKYAIPD 610 (717)
T ss_pred HHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh---hcchHHH
Confidence 999999999999876422 22232 2467899999999887766666666666542 11 111 1456777
Q ss_pred HHHhhCC------CCHHHHHHHHHHHHHHHHhcchHHHhh-----HHHHHHHHHhhhcCCChhhHHHHHHHHHHH--HHh
Q 002638 251 IHECLGS------TDWATRKAAADALSALALHSSNLVIDG-----ATSTLTVLEACRFDKIKPVRDSMNEALQLW--KKI 317 (898)
Q Consensus 251 L~e~Lsd------dDW~vRKaA~EaL~sLA~avge~L~Py-----~~~~I~~LE~~RfDKvKpVRD~A~eALelW--K~L 317 (898)
|.++|.+ .+|++=.++|-+|..|...-.+.-..+ ++.++.+... ++..|.++-+....-.+| +++
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s--~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS--QHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888765 358888888888877764444322222 1222322223 777777775544444444 444
Q ss_pred hcC
Q 002638 318 AGK 320 (898)
Q Consensus 318 a~~ 320 (898)
-..
T Consensus 689 h~~ 691 (717)
T KOG1048|consen 689 HFK 691 (717)
T ss_pred hhh
Confidence 433
No 231
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.32 E-value=47 Score=41.70 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhch
Q 002638 37 AMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTS 115 (898)
Q Consensus 37 ~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~ 115 (898)
++-.--..++.++-|.+|....-+.+..|-.+.. .....|..|.--++..+++++-.+|+-++-+.=-+++.|. +.+.
T Consensus 276 alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~-~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv 354 (948)
T KOG1058|consen 276 ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA-LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV 354 (948)
T ss_pred HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh-hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence 3334456788888999999888888877777763 1222355555455555678888999999887777777776 4466
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 116 PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~ 195 (898)
.+|.+=+..-...=.|..-.-|+.-..+|...+-.+. ++-..+++-|++-|++.|+..-.+..+=+..++|-
T Consensus 355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--------~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--------EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK 426 (948)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 6665544444444333445679999999988887771 44677889999999999988777777777777776
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCchh
Q 002638 196 ASDPPVVAFQKLCARICKLLSNQNFM 221 (898)
Q Consensus 196 a~d~~~~yL~~LlPRLlkLLks~~~k 221 (898)
.+++-..++.+|+.-|-++=....|+
T Consensus 427 ~p~Lr~~ii~~l~~~~~~irS~ki~r 452 (948)
T KOG1058|consen 427 FPNLRASIIEKLLETFPQIRSSKICR 452 (948)
T ss_pred CchHHHHHHHHHHHhhhhhcccccch
Confidence 66665566777766665554544444
No 232
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=83.08 E-value=28 Score=44.57 Aligned_cols=147 Identities=14% Similarity=0.225 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHH
Q 002638 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLF 171 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD-s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ 171 (898)
+.+|..++..|+.+|-.|++... +.||.+++-|.=.+ ..||+-.+-+++-|+.+|+ ....-|.|.+.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--------am~d~YiP~I~ 1012 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--------AMTDRYIPMIA 1012 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--------HHHHHhhHHHH
Confidence 56888999999999998887654 35677777777665 5889999999999999984 23566888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHH
Q 002638 172 EAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQ 249 (898)
Q Consensus 172 eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp 249 (898)
..|-++.+-|.-.++.-|+.+++.. ...+-..|+-|++-.|=+.+.+++.-+==+|+.+.... -.|+.+|-..|-
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhh---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 9999999999999999999999853 22333457777777777778888887777889887665 345555555555
Q ss_pred HHHHh
Q 002638 250 SIHEC 254 (898)
Q Consensus 250 ~L~e~ 254 (898)
.|-++
T Consensus 1090 ~ln~~ 1094 (1529)
T KOG0413|consen 1090 ALNQA 1094 (1529)
T ss_pred HHHHH
Confidence 55554
No 233
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.75 E-value=5.5 Score=47.99 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=107.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHH-HhcCCHhHHHHHHHHHHHHHHhcCCCCch
Q 002638 124 HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEA-MMEQNKGVQSGAAMCMAKMVECASDPPVV 202 (898)
Q Consensus 124 ~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~ea-L~eqnk~VQegAasALAkiIE~a~d~~~~ 202 (898)
+|...|.|.||.+|-.-+.+++ ++... .+ -..+++.|+.. +.+.|..|.-+|..||.-+|=..++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~a-lAy~G--Tg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLA-LAYVG--TG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHH-HHHhc--CC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc----
Confidence 5667788999999988877765 22222 11 11244455544 5788999999999999888743333
Q ss_pred hHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHH
Q 002638 203 AFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLV 281 (898)
Q Consensus 203 yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L 281 (898)
++++.+++|... ++.+|...--++|-. .+|. .....+-.|-....|..--+|.+||=+++-|....-+.+
T Consensus 586 ----~lv~tvelLs~shN~hVR~g~AvaLGia-cag~----G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 ----LLVGTVELLSESHNFHVRAGVAVALGIA-CAGT----GDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred ----hhhHHHHHhhhccchhhhhhhHHHhhhh-hcCC----ccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 667777777654 677887655555543 2221 112233333344466677899999999999999999999
Q ss_pred HhhHHHHHHHHHhhhcCCCh
Q 002638 282 IDGATSTLTVLEACRFDKIK 301 (898)
Q Consensus 282 ~Py~~~~I~~LE~~RfDKvK 301 (898)
-|-..+|++-++..-.||.+
T Consensus 657 np~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred ChhHHHHHHHHHHHHhhhhH
Confidence 99999999999999999887
No 234
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.14 E-value=1.2e+02 Score=36.07 Aligned_cols=213 Identities=12% Similarity=0.140 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCC-ChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC-h
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD-S 134 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~-k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD-s 134 (898)
.|-.|+++|...+..++.+.++.+-.+..+-.... ...+|++++.+|..++++........= ..+.+.+.++. +
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc
Confidence 45567777877777776666666666555554333 355999999999999998876433222 22333333331 2
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccc-cCCchhHHhhHHHHHHHHhcC-------------CH---hHHHHHHHHHHHHHHh-
Q 002638 135 GMKEACRDSIGSLSKLYLN-GKE-ENNGTVVGLFVKPLFEAMMEQ-------------NK---GVQSGAAMCMAKMVEC- 195 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik-~~~-e~~~~~~~~lL~pL~eaL~eq-------------nk---~VQegAasALAkiIE~- 195 (898)
..=+.-.+++..|..+.-+ .++ .+....+...+.+++++.... +. ......+.-|=.++-+
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv 161 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV 161 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 2223344445555444411 011 112233334444444332110 00 0122333333333333
Q ss_pred c----CCCCchhHHHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638 196 A----SDPPVVAFQKLCARICKLLSNQNFM-AKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (898)
Q Consensus 196 a----~d~~~~yL~~LlPRLlkLLks~~~k-aK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL 270 (898)
. .....+.+..|+.+++.+-...... .=.++|..+.+++.-|..=...+..++..|-...... .+.+.+-+++
T Consensus 162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m 239 (464)
T PF11864_consen 162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTM 239 (464)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHH
Confidence 2 2344467888888888884433221 1136788888887666444567777777777664443 5666677788
Q ss_pred HHHHH
Q 002638 271 SALAL 275 (898)
Q Consensus 271 ~sLA~ 275 (898)
..|+.
T Consensus 240 ~nL~~ 244 (464)
T PF11864_consen 240 RNLLK 244 (464)
T ss_pred HHHHc
Confidence 87774
No 235
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.94 E-value=53 Score=34.08 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
+..||..|++..-+.+..+|..|+.+++.+.+. ..+-| .+.+|+|+-...||++.||+.|...+..+.+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ--GLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 456777777766678889999999999888873 33333 345777788888999999999888888777766
No 236
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.87 E-value=9.5 Score=47.01 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=92.8
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002638 177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL 255 (898)
Q Consensus 177 qnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLk-s~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~L 255 (898)
.++..|.+|-.||.++.=-. -.|..+=+|-|+..+. +|.+.+|+.++-.+|-++ -.|-..++..-..|.+.|
T Consensus 908 sd~~lq~aA~l~L~klMClS----~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~---vcfN~~~de~t~yLyrrL 980 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLS----FEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFL---VCFNTTADEHTHYLYRRL 980 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHhhCCCcceeccceeeccccc---eehhhhhHHHHHHHHHHh
Confidence 58999999999999986311 2355556677777776 899998876554444442 135566777888899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 256 GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 256 sddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
.|++..+|+.+.-++..+..+-.=++.-+.+.....|+ |.+..+.|. |=.|+-+++.+
T Consensus 981 ~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~----deda~Isdm---ar~fft~~a~K 1038 (1128)
T COG5098 981 GDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLT----DEDAEISDM---ARHFFTQIAKK 1038 (1128)
T ss_pred cchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhcc----CCcchHHHH---HHHHHHHHHhc
Confidence 99999999999988887766554455555555444444 777766675 55677888866
No 237
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.78 E-value=19 Score=43.85 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc----ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG----AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 203 yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG----a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
-+.+++..++.+-+++...-| .+..+-+++.-- ......++.++-.++..+.+.|..+|+..|+.|..|...++
T Consensus 46 ~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~ 123 (885)
T COG5218 46 EFLRVVNTILACKKNPSIPDR--ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR 123 (885)
T ss_pred HHHHHHHHhhccccCCCcHHH--HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc
Confidence 455677777877777765544 355666665311 12244666777778888999999999999999999999999
Q ss_pred hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 279 e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
+.=......++..|...-||.-+.||--|+.+|-.+++..+-
T Consensus 124 eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 124 EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 654455678888999999999999998888888877765544
No 238
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=79.76 E-value=59 Score=34.11 Aligned_cols=92 Identities=15% Similarity=0.271 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCC--hh--HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHH-HHhchh
Q 002638 39 VEMKQKILTSLSKLAD--RD--THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVC-ELHSEL 113 (898)
Q Consensus 39 ~eLK~rll~~L~KLsD--rD--T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IA-Eg~gd~ 113 (898)
-++|.-++.||+.-+- -+ .-+.....+-.=+-.++.+..+-+..||.... ..++ +.|+..|.-+. ..+++.
T Consensus 2 ~eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 2 REIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEF 77 (174)
T ss_pred cchHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhH
Confidence 4788999999977632 22 11111111111111224445777788887533 2222 45777777776 668899
Q ss_pred chhhHHHHHHHHHHhhcCCCh
Q 002638 114 TSTHVTKIISHIVKRLKDSDS 134 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs 134 (898)
+.|++..+++-+.++|.+|..
T Consensus 78 l~~~~~~L~~~~~~~L~~p~~ 98 (174)
T PF04510_consen 78 LIPFMENLLPEISKVLLPPEE 98 (174)
T ss_pred HHHHHHHHHHHHHHHcCCchh
Confidence 999999999999999999964
No 239
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.93 E-value=31 Score=40.21 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=105.0
Q ss_pred HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc-ccCc
Q 002638 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG-AIAP 241 (898)
Q Consensus 164 ~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG-a~~~ 241 (898)
...++-|+-.|...|..|-.-|..-|-.++-.-+......+..|++++..+.-+.++.+|..++.++-.++. .+ ....
T Consensus 57 ~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 57 GLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 346677777777788888777777777776653333334566789999999999999999999998887653 33 3368
Q ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHH----HHHHHhhhcCCC
Q 002638 242 QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATST----LTVLEACRFDKI 300 (898)
Q Consensus 242 pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~----I~~LE~~RfDKv 300 (898)
+++..+|+.+.-.+++.-..+|.-+.-.|..++...++.|.-+...+ +.++...++++-
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~~~~~~ 199 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKLQFYKE 199 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 89999999999999999999999999999999999998887775444 345555555543
No 240
>PF05536 Neurochondrin: Neurochondrin
Probab=77.24 E-value=1.8e+02 Score=35.43 Aligned_cols=178 Identities=14% Similarity=0.153 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCH-hHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHH
Q 002638 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNK-GVQSGAAMCMAKMVECASDPPVVAFQ-KLCARIC 212 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk-~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLl 212 (898)
.-++.+...+++++. .+.... ...+..-+|.|++.+..... .+..=+..||..++ ..++....++. .-++.|+
T Consensus 72 ~~~~LavsvL~~f~~---~~~~a~-~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR---DPELAS-SPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHHHHcC---Chhhhc-CHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHH
Confidence 445555555555554 432211 24466688999999966655 66667899999999 33333223333 2567777
Q ss_pred HHhcCCchhhHHHHHHHHHHHH-hcc----ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchH--HH---
Q 002638 213 KLLSNQNFMAKASLLPVVGSLS-QVG----AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNL--VI--- 282 (898)
Q Consensus 213 kLLks~~~kaK~alL~aIgSLA-~vG----a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~--L~--- 282 (898)
.++.+..+ .+..++.++..+. ..+ ......+..+++.|...+....-..+..+|+.|+.+....+-. -.
T Consensus 147 ei~~~~~~-~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~ 225 (543)
T PF05536_consen 147 EIIPNQSF-QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPS 225 (543)
T ss_pred HHHHhCcc-hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCCh
Confidence 77776433 3455566555543 333 1234566677777777776666677888999999988877411 11
Q ss_pred -hhHHHHHHHHHhhhcCCC-hhhHHHHHHHHHHHHHhh
Q 002638 283 -DGATSTLTVLEACRFDKI-KPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 283 -Py~~~~I~~LE~~RfDKv-KpVRD~A~eALelWK~La 318 (898)
.....+...+...-.-|. +.-|+.++..+...-.+.
T Consensus 226 ~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 226 PKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred hhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 123444444443333444 336787555555544443
No 241
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.77 E-value=1.6e+02 Score=37.07 Aligned_cols=108 Identities=21% Similarity=0.257 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHh-c---c---ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 206 KLCARICKLLSNQNFMAKASLLPVVGSLSQ-V---G---AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 206 ~LlPRLlkLLks~~~kaK~alL~aIgSLA~-v---G---a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
+=+..+.++|++.+|-.|.+.+++.+-++. . | ...++-+..+|..|.+.|.|..+-+|-.|++.+..|-..-.
T Consensus 299 rq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 299 RQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 335778899999999999998888777642 1 1 12344566677778888999999999999999988766443
Q ss_pred hHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 002638 279 NLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI 317 (898)
Q Consensus 279 e~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~L 317 (898)
++.--...++...-.|.+|+--.||.- |+.+...+
T Consensus 379 -k~~~~r~ev~~lv~r~lqDrss~VRrn---aikl~SkL 413 (1128)
T COG5098 379 -KTVGRRHEVIRLVGRRLQDRSSVVRRN---AIKLCSKL 413 (1128)
T ss_pred -cccchHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHH
Confidence 222345677777788888999999986 44444443
No 242
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=76.76 E-value=3e+02 Score=37.65 Aligned_cols=223 Identities=15% Similarity=0.188 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhH-HHHHHHHHHHHHHhchhchhh
Q 002638 39 VEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVK-KESVRLLALVCELHSELTSTH 117 (898)
Q Consensus 39 ~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vR-KeAIlLLG~IAEg~gd~I~Ph 117 (898)
..++..++..|-.+-|.+-+..++++|..+... +++...++|.+|..-. ..+... +.-..+++.+ ...-...
T Consensus 206 ~~lq~eiI~~LPeIl~ds~h~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~--Ls~~~l~~vr~~vl~~L----~s~~~e~ 278 (1426)
T PF14631_consen 206 VELQKEIISSLPEILDDSQHDEVVEELLELLQE-NPELTVPILDALSNLN--LSPELLEEVREKVLEKL----SSVDLED 278 (1426)
T ss_dssp TTTHHHHHHTHHHHS-GGGHHHHHHHHHHHHHH--STTHHHHHHHHHHS-----HHHHHHHHHHHHHST----TSS-TTH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhc-CCchhhhHHHHHhcCC--CCHHHHHHHHHHHHHHH----hcCChhh
Confidence 357788888888886566788888888888864 4555777788776432 222222 2222333333 2223556
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH-----------------hcc-cccC----CchhHHhhHHHHHHHHh
Q 002638 118 VTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY-----------------LNG-KEEN----NGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 118 LpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l-----------------ik~-~~e~----~~~~~~~lL~pL~eaL~ 175 (898)
||.|+.+|+..+...+. .++|..|=..+ ++. +... ....-..-...++++|.
T Consensus 279 LP~lirFLL~s~t~~da------~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lil~~lk 352 (1426)
T PF14631_consen 279 LPVLIRFLLQSITPSDA------VEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEKLILDVLK 352 (1426)
T ss_dssp HHHHHHHHHHS-SSTTH------HHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCcccH------HHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccHHHHHHHHHH
Confidence 99999999999886663 22222222222 000 0000 00001112234444442
Q ss_pred cCCHhHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcCCchh-h--------HHH--HHHHHHHHHhc-cccCcc
Q 002638 176 EQNKGVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSNQNFM-A--------KAS--LLPVVGSLSQV-GAIAPQ 242 (898)
Q Consensus 176 eqnk~VQegAasALAkiIE~a~d-~~~~yL~~LlPRLlkLLks~~~k-a--------K~a--lL~aIgSLA~v-Ga~~~p 242 (898)
..-..+.-.+.|.-+.|+...+ ..-..++.++--++.-.+..+-+ + |.. --..+...+.. ...+..
T Consensus 353 -s~lr~~k~l~eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~~vL~~ 431 (1426)
T PF14631_consen 353 -SGLRFSKDLSEAWIKAIESLEDASDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHSEVLKD 431 (1426)
T ss_dssp -HHHHH-HHHHHHHHHHHHHGGGSTT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHTT
T ss_pred -HHHHhccHHHHHHHHHHhcCCCccccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhHHHHHH
Confidence 2233445577788888886533 22235665554444433321111 0 100 01122222211 245678
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002638 243 SLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (898)
Q Consensus 243 yld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~ 275 (898)
|+..+|.....+|.+.+..+|..++.+...+=.
T Consensus 432 ~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~ 464 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKEPSVREFGSHLYKYLFK 464 (1426)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 888888888888888887777776655444333
No 243
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=18 Score=39.24 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=76.9
Q ss_pred HHHHHHHHHhc---CC-chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh---cc
Q 002638 206 KLCARICKLLS---NQ-NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH---SS 278 (898)
Q Consensus 206 ~LlPRLlkLLk---s~-~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a---vg 278 (898)
.++|.|+.-|. +| .|-++..+.++|-. .|.-..|.+..++..|...|...|.++-+.++.+|..|... +|
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~---~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG 190 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLA---GGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG 190 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHh---cccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence 34555554443 33 34455555554432 33667889999999999999999999999888887776655 45
Q ss_pred hHHHhhHHHHHHHHHhh-----------hcCCChhhHHHHHHHHHHHHHhh
Q 002638 279 NLVIDGATSTLTVLEAC-----------RFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 279 e~L~Py~~~~I~~LE~~-----------RfDKvKpVRD~A~eALelWK~La 318 (898)
..|.||..+++.++... .+||..-+=|...+.|+.+..-.
T Consensus 191 ~aLVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~G 241 (262)
T KOG3961|consen 191 AALVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSG 241 (262)
T ss_pred hhhhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcC
Confidence 99999999998887532 34555556688888888765444
No 244
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.87 E-value=96 Score=41.43 Aligned_cols=206 Identities=13% Similarity=0.134 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHH
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGM 136 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~V 136 (898)
..+.|-..+.+++.++.+..=..+..++...... ....+.. ....|-+ +......-|--|+|++..-|.-.+-.+
T Consensus 201 a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~-~~~~~~~---~he~i~~-L~~~~p~ll~~vip~l~~eL~se~~~~ 275 (1266)
T KOG1525|consen 201 ADKLASDLIERCADNLEDTIANFLNSCLTEYKSR-QSSLKIK---YHELILE-LWRIAPQLLLAVIPQLEFELLSEQEEV 275 (1266)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHhhcccc-ccchhhH---HHHHHHH-HHHhhHHHHHHHHHHHHHHHhcchHHH
Confidence 4456666677777766553333334555543321 1112211 1112222 222223346677888888888889999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc
Q 002638 137 KEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS 216 (898)
Q Consensus 137 R~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLk 216 (898)
|--+...+|++.......-++.....|..| +..+.+....|-....-+..-++-+.+...... .++-.+.. .
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~f----l~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~--~~~~~l~~--~ 347 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLSETYDDLWSAF----LGRFNDISVEVRMECVESIKQCLLNNPSIAKAS--TILLALRE--R 347 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhcccchHHHHHH----HHHhccCChhhhhhHHHHhHHHHhcCchhhhHH--HHHHHHHh--h
Confidence 999999999998777333222223344444 444556666665544333333333222211100 11111221 2
Q ss_pred CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 217 NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 217 s~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
+.++..+-....+|..+ .+......|...+|..+.+.+-|.-|.+|+.|+..|..|...
T Consensus 348 ~~D~~~rir~~v~i~~~-~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 348 DLDEDVRVRTQVVIVAC-DVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred cCChhhhheeeEEEEEe-ehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22333221111111111 011122344555777888889999999999999999888773
No 245
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.50 E-value=1.5e+02 Score=33.43 Aligned_cols=210 Identities=12% Similarity=0.111 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcC----CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH-----Hhc
Q 002638 41 MKQKILTSLSKL----ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE-----LHS 111 (898)
Q Consensus 41 LK~rll~~L~KL----sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAE-----g~g 111 (898)
+-.++++.|..+ ....+...++..|-.=...++.+.-..++..+...+.+.++.+|+..++++|.+.. ...
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 334444544444 33334444444444444444333345667777777888899999999999999985 333
Q ss_pred hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCch----hHH---------hhHHHHHHHHhcCC
Q 002638 112 ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT----VVG---------LFVKPLFEAMMEQN 178 (898)
Q Consensus 112 d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~----~~~---------~lL~pL~eaL~eqn 178 (898)
..+.+.+|.++.++-+....|-+....-...+.-.+.. +.....+.... .|. .+-+-++..| ..
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~~ 175 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--AS 175 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--CC
Confidence 55677788888888888877765433111111111111 10000000000 000 0111111111 23
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh
Q 002638 179 KGVQSGAAMCMAKMVECASDPPVV-AFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL 255 (898)
Q Consensus 179 k~VQegAasALAkiIE~a~d~~~~-yL~~LlPRLlkLLks~--~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~L 255 (898)
.....-.+.+|..+.-+....... ....+-.-++.++-++ ...+|..++.++..+....... ....++..+.+.|
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~--l~~~li~~l~~~l 253 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL--LSKSLISGLWKWL 253 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHH
Confidence 334444666776666554332221 1244555566777777 8899999999999886422111 3334455555544
No 246
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=75.36 E-value=31 Score=35.85 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHH
Q 002638 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVI 282 (898)
Q Consensus 203 yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~ 282 (898)
..+..+++++++.-+++.+++..++.+|..+..-|-. +=..++|.|.-..+|++..+|+.|.+.+..+..-.+..+.
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv---nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV---NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC---ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566778888888999999999999999999864422 2246899999999999999999999999999888776554
No 247
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.45 E-value=9.2 Score=41.31 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=70.7
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE 156 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~ 156 (898)
+..||+.+.+-+...+-++|-.|..-+--+...-++.+.|.||+++.-|...|..-|-.|--.|..+|.+|+... .+
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~-~~-- 188 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV-GC-- 188 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-cc--
Confidence 778888888888777777777776666666666678999999999999999999999999999999998887765 22
Q ss_pred cCCchhHHhhHHHHHHHH
Q 002638 157 ENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 157 e~~~~~~~~lL~pL~eaL 174 (898)
.+..+..|...|+-.+
T Consensus 189 --vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 189 --VGAALVPFYRQLLPVL 204 (262)
T ss_pred --cchhhhhHHHHhhhhh
Confidence 1233444555554444
No 248
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.91 E-value=19 Score=47.94 Aligned_cols=97 Identities=11% Similarity=0.196 Sum_probs=77.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCC
Q 002638 54 DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSD 133 (898)
Q Consensus 54 DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpD 133 (898)
++..-+-...++-++... +++++.++...+.-..-+.....|-.|+..+..+...-++...++||+++|+|-.-+.|-+
T Consensus 1517 ~~~v~~~li~~i~~~~~a-~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~ 1595 (1621)
T KOG1837|consen 1517 SDIVSKLLIAEIASDSVA-DKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDED 1595 (1621)
T ss_pred hhHHHHHHHHHHHhhccC-ChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhH
Confidence 333455555555555543 3334888888887776677788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002638 134 SGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 134 s~VR~Ac~~tLG~LA~~l 151 (898)
-.|-..|...+-++=..+
T Consensus 1596 ~~Ve~~~q~li~q~e~~l 1613 (1621)
T KOG1837|consen 1596 DEVECLCQKLIRQLEEVL 1613 (1621)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999776665555
No 249
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=73.56 E-value=18 Score=34.29 Aligned_cols=63 Identities=10% Similarity=0.007 Sum_probs=53.5
Q ss_pred hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC
Q 002638 112 ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ 177 (898)
Q Consensus 112 d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq 177 (898)
+.+.||.+.|+.+|...+-+-.+.||.-+...+..|..++-.. -....|..+++..++.|+-.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~---~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE---LCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH---hHhhhHHHHHHHHHHHHCCC
Confidence 5689999999999999999999999999999999999998332 12356888999999999543
No 250
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.49 E-value=2.9e+02 Score=35.97 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc----ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG----AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 203 yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG----a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
++.+++.|-..+|.++.-.+|-.+|+++..-..+- ..+.|-+-..=|.+.+++..+|.-+-..|++||..|....|
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 36689999999999999999999999987754321 45677777888889999999999999999999999999999
Q ss_pred hHHHhh-HHHHHHHHHhhhcC
Q 002638 279 NLVIDG-ATSTLTVLEACRFD 298 (898)
Q Consensus 279 e~L~Py-~~~~I~~LE~~RfD 298 (898)
++++.. ...++.-+++.-.|
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 887643 46655555544334
No 251
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.41 E-value=6.2 Score=38.79 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHH------HHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002638 38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLL------NCLYESSNDPKPAVKKESVRLLALVCE 108 (898)
Q Consensus 38 ~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fL------s~L~es~~s~k~~vRKeAIlLLG~IAE 108 (898)
=+++-++|+.+|.+..|..+..+|+..|-.++..+|. . -.++ ..|-+-+.++++.+|++|++++..+.-
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-G-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-G-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-H-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4788889999998888999999999999999998743 3 2222 233444578999999999999987654
No 252
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=71.92 E-value=1.1e+02 Score=36.65 Aligned_cols=153 Identities=11% Similarity=0.158 Sum_probs=93.8
Q ss_pred HHHHHHHHhhhcCCC--ChhhHHHHHHHH---HHHHHHhchh-chhhHHHHHHHHHHhhcC--------CChHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDP--KPAVKKESVRLL---ALVCELHSEL-TSTHVTKIISHIVKRLKD--------SDSGMKEACRD 142 (898)
Q Consensus 77 Lp~fLs~L~es~~s~--k~~vRKeAIlLL---G~IAEg~gd~-I~PhLpkIL~~IlrrLkD--------pDs~VR~Ac~~ 142 (898)
++..+.++.+...+. ....|..++..+ ..+...++.. +...=+.|...+.+.+.+ .+...|.-+-+
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 445555555555444 667888888888 7777777755 455555566666666731 24688999999
Q ss_pred HHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-h-hHHHHHHH-HH-HHhcCC
Q 002638 143 SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-V-AFQKLCAR-IC-KLLSNQ 218 (898)
Q Consensus 143 tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~-yL~~LlPR-Ll-kLLks~ 218 (898)
+||.|+........ .- -.++..||++|.+..+.+-.+.-.||..+......... . ....+... ++ ....+.
T Consensus 397 ~lG~L~~~~p~l~~----~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~ 471 (501)
T PF13001_consen 397 TLGLLAKRAPSLFS----KD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSE 471 (501)
T ss_pred HHHHHHccCccccc----cc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccch
Confidence 99999999843211 11 34889999999777777777777777777766433222 1 11111111 11 111233
Q ss_pred chhhHHHHHHHHHHHH
Q 002638 219 NFMAKASLLPVVGSLS 234 (898)
Q Consensus 219 ~~kaK~alL~aIgSLA 234 (898)
...+|-+++...+++.
T Consensus 472 ~~~~R~~avk~an~~f 487 (501)
T PF13001_consen 472 VRSCRYAAVKYANACF 487 (501)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 4456667776666654
No 253
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.03 E-value=50 Score=41.68 Aligned_cols=219 Identities=17% Similarity=0.138 Sum_probs=122.4
Q ss_pred HcCCChhHHHHHHHHHHHHHhcCC-------CC---CH-----------HHHHHHHhhhcCCCChhhHHHHHHHHHHHHH
Q 002638 50 SKLADRDTHQIAIEDLEKTIQTLS-------QE---SL-----------PMLLNCLYESSNDPKPAVKKESVRLLALVCE 108 (898)
Q Consensus 50 ~KLsDrDT~k~Aa~eLD~Ia~~L~-------pe---~L-----------p~fLs~L~es~~s~k~~vRKeAIlLLG~IAE 108 (898)
+...|.+..+++++.|--+..+=+ +. ++ .-++.+|.......+-.+|..+|.+|..+..
T Consensus 72 ~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls 151 (970)
T KOG0946|consen 72 RDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLS 151 (970)
T ss_pred hccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHh
Confidence 444677777777776655443210 00 01 1234444555556678999999999999998
Q ss_pred Hhchhc---hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc-C--CH-hH
Q 002638 109 LHSELT---STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-Q--NK-GV 181 (898)
Q Consensus 109 g~gd~I---~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e-q--nk-~V 181 (898)
..+.-+ .-..|.=++.++.-|.|+.-.||+.+.-.|..|+.....- + .--.+..++..||..+.+ . +- -|
T Consensus 152 ~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I--Q-KlVAFENaFerLfsIIeeEGg~dGgIV 228 (970)
T KOG0946|consen 152 CRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI--Q-KLVAFENAFERLFSIIEEEGGLDGGIV 228 (970)
T ss_pred cCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH--H-HHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 877433 3346777889999999999999999988777776655110 0 001244455566666632 2 11 23
Q ss_pred HHHHHHHHHHHHHh-cCCCCchhHH--HHHHHHHHHhcCCchh-----------hHH--HHHHHHHHHHhcc-c-cC-cc
Q 002638 182 QSGAAMCMAKMVEC-ASDPPVVAFQ--KLCARICKLLSNQNFM-----------AKA--SLLPVVGSLSQVG-A-IA-PQ 242 (898)
Q Consensus 182 QegAasALAkiIE~-a~d~~~~yL~--~LlPRLlkLLks~~~k-----------aK~--alL~aIgSLA~vG-a-~~-~p 242 (898)
-+-+..-|-.++-+ ...+ .|+. .-+|||.++|.-+-|. +.+ -+|.+|.+++..| . .. ..
T Consensus 229 veDCL~ll~NLLK~N~SNQ--~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q 306 (970)
T KOG0946|consen 229 VEDCLILLNNLLKNNISNQ--NFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQ 306 (970)
T ss_pred HHHHHHHHHHHHhhCcchh--hHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 33333334444432 1111 2332 2578888888654222 112 4677788877544 1 11 11
Q ss_pred ---cH--HHHHHHHHHhhCCCC--HHHHHHHHHHHHHH
Q 002638 243 ---SL--EPLLQSIHECLGSTD--WATRKAAADALSAL 273 (898)
Q Consensus 243 ---yl--d~lLp~L~e~LsddD--W~vRKaA~EaL~sL 273 (898)
.+ ..+|..|...|.+++ ..++..++-+++.+
T Consensus 307 ~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAev 344 (970)
T KOG0946|consen 307 NQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEV 344 (970)
T ss_pred HHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHH
Confidence 11 135566777777764 44555544444433
No 254
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.67 E-value=15 Score=36.08 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=47.1
Q ss_pred HHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHH--hhHHHHHHHHhcCCHhHHHHHHHHHHHHHH
Q 002638 121 IISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG--LFVKPLFEAMMEQNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 121 IL~~IlrrLk-DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~--~lL~pL~eaL~eqnk~VQegAasALAkiIE 194 (898)
++-.+++.|. ..|+.+-.+||.-||.+++++-. + -.++. .+-..+++.|...|+.|+.-|..|+.+++-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-g----r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-G----RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-G----HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh-H----HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555555552 34788999999999999999922 1 11111 123456777788999999999999999873
No 255
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=69.94 E-value=1.3e+02 Score=32.96 Aligned_cols=131 Identities=12% Similarity=0.113 Sum_probs=82.7
Q ss_pred hhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcC---CCCc-hhHHHHHHHHHHHhcCCc-----hhhHHH-HHHH
Q 002638 161 TVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMVECAS---DPPV-VAFQKLCARICKLLSNQN-----FMAKAS-LLPV 229 (898)
Q Consensus 161 ~~~~~lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~---d~~~-~yL~~LlPRLlkLLks~~-----~kaK~a-lL~a 229 (898)
+.+..+..-++..|.+ .-+.+-+.+.-++.++|+..- +... ......+..++..+.+.. .-.|.+ +--+
T Consensus 92 ~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~ 171 (255)
T PF10350_consen 92 DQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFL 171 (255)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHH
Confidence 3455555666666643 466777888888888888752 2222 234456677777777661 223433 3334
Q ss_pred HHHHHhcc-ccCcccHHHHHHHHHHhhCCCCH--------HHHHHHHHHHHHHHHhcc--hHHHhhHHHHHHH
Q 002638 230 VGSLSQVG-AIAPQSLEPLLQSIHECLGSTDW--------ATRKAAADALSALALHSS--NLVIDGATSTLTV 291 (898)
Q Consensus 230 IgSLA~vG-a~~~pyld~lLp~L~e~LsddDW--------~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~~ 291 (898)
|.++..+. ....+.+...|..|+++...+.- ..+-.|+.+|-.|-.--. +...||+.+.+.+
T Consensus 172 i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~l 244 (255)
T PF10350_consen 172 ILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALIL 244 (255)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 55655443 22237888999999998765322 477888888888766544 7888888887763
No 256
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=69.84 E-value=93 Score=36.88 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHH-HHHHHhcCCHhHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHH
Q 002638 135 GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKP-LFEAMMEQNKGVQSGAAMCMAKMVECASDPP-VVAFQKLCARIC 212 (898)
Q Consensus 135 ~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~p-L~eaL~eqnk~VQegAasALAkiIE~a~d~~-~~yL~~LlPRLl 212 (898)
.-|-+|..+||.++.++.. ..+..++.+ |...|....-.-+..|++-|........... .+..+.+.++|.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~-------~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPE-------SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 4588999999999999933 235666665 7777777777788889999998888753321 122577889999
Q ss_pred HHhcCC---ch--------hhHHHHHHHHHHHHhcc
Q 002638 213 KLLSNQ---NF--------MAKASLLPVVGSLSQVG 237 (898)
Q Consensus 213 kLLks~---~~--------kaK~alL~aIgSLA~vG 237 (898)
.+|.++ .| +++..+..++.++...|
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g 210 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVG 210 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999843 22 24556667777776544
No 257
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=69.75 E-value=8.8 Score=29.80 Aligned_cols=28 Identities=32% Similarity=0.236 Sum_probs=21.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 247 LLQSIHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 247 lLp~L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
.+|.|.++|.+.+..+|+.|+-+|+.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677777777777888888888777765
No 258
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=69.73 E-value=11 Score=35.57 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=51.3
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHHHHHHhhcCC
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIISHIVKRLKDS 132 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~~IlrrLkDp 132 (898)
.++.++.+|...+.+-.+.+|..++..|..+.+.|++. +..+..+|++..+.-|.-.
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 47788888888899999999999999999999999988 7889999999988888766
No 259
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=69.61 E-value=2.6e+02 Score=34.39 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 203 AFQKLCARICKLLS-NQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHE-CLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 203 yL~~LlPRLlkLLk-s~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e-~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
.+..++-.+..+++ +|.-.+|.++++.++++...- ......+-..|-.|+. .|.+.+|-+.-.|+|+++..|....
T Consensus 476 ~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 34455555566663 344448888888888876422 2222222233344444 3788999999999999999987654
No 260
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=69.21 E-value=1.2e+02 Score=30.40 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc-hhchhhHHHH
Q 002638 43 QKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS-ELTSTHVTKI 121 (898)
Q Consensus 43 ~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g-d~I~PhLpkI 121 (898)
+++..+|+|+++. .....+++|..+....+++.+..++..|.+.... .+.....+..+++.+...++ +.....+..+
T Consensus 2 r~v~~~lnklt~~-n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~-~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLTPS-NFESIIDELIKLNWSDDPETLKEIVKLIFEKAVE-EPNFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCSST-THHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SGGGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHH-HHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhc-CchHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 3577889999855 4445555555555543444577777777765422 23444455555555655555 3333333444
Q ss_pred HHHHHH
Q 002638 122 ISHIVK 127 (898)
Q Consensus 122 L~~Ilr 127 (898)
...+..
T Consensus 80 ~~~f~~ 85 (209)
T PF02854_consen 80 QEEFEE 85 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 261
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.68 E-value=2.1e+02 Score=33.34 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=105.8
Q ss_pred HcCCChhHHHHHHHHHHHHHh------cC-CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhc--hhch--hhH
Q 002638 50 SKLADRDTHQIAIEDLEKTIQ------TL-SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHS--ELTS--THV 118 (898)
Q Consensus 50 ~KLsDrDT~k~Aa~eLD~Ia~------~L-~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~g--d~I~--PhL 118 (898)
...-|.+...-+...|..++- .+ ....|..++.||-+...+..-..-|.|+.+|-.+|-.-. ..|. .-+
T Consensus 251 ~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~ 330 (461)
T KOG4199|consen 251 QAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGL 330 (461)
T ss_pred HccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcCh
Confidence 333467766666666655552 11 233489999999875543332234556666665553222 1122 247
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHH-hhHHHHHHHHhc--CCHhHHHHHHHHHHHHHHh
Q 002638 119 TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVG-LFVKPLFEAMME--QNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 119 pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~-~lL~pL~eaL~e--qnk~VQegAasALAkiIE~ 195 (898)
++|+....+.+. +|.|-+.++-+|..|+-.-.++. ...+. -.-...+++|.. +...||--||+.+-.++-.
T Consensus 331 ~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~pdhs----a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 331 DKIITLALRHSD--DPLVIQEVMAIISILCLRSPDHS----AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCcchH----HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 888888888774 45677777767766665442220 00000 012344567732 3567999999999999976
Q ss_pred cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 002638 196 ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL 233 (898)
Q Consensus 196 a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL 233 (898)
.......+|..=+.+|+..-+..|.-++.++-.++.-+
T Consensus 405 s~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 405 SAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 65555667777778888877777776666555555443
No 262
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.18 E-value=62 Score=32.77 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHH----
Q 002638 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS--DSGMKEACRDSIGSL---- 147 (898)
Q Consensus 74 pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp--Ds~VR~Ac~~tLG~L---- 147 (898)
++.+..+|.+|... .....+|..+..++..+-+...+. +-.++-.+|...+.++ ++.++-.+ ++..+
T Consensus 2 ~~~l~~lL~~L~~~--~~~~~~r~~a~v~l~k~l~~~~~~---~~~~~~~~i~~~~~~~~~d~~i~~~~--~l~~lfp~~ 74 (157)
T PF11701_consen 2 SDELDTLLTSLDML--RQPEEVRSHALVILSKLLDAAREE---FKEKISDFIESLLDEGEMDSLIIAFS--ALTALFPGP 74 (157)
T ss_dssp CCCCCHHHHHHHCT--TTSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHCCHHHHHHH--HHHHHCTTT
T ss_pred hHHHHHHHHHhccc--CCCHhHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHccccchhHHHHHH--HHHHHhCCC
Confidence 45678888888742 234678999999998885444443 3444455555555543 33433222 22222
Q ss_pred ---HHHHhcccccCCchhHHhhHHHHHHHHh--cCCHhHHHHHHHHHHHHHHh--cCCCCchhHHHHHHHHHHHhcC
Q 002638 148 ---SKLYLNGKEENNGTVVGLFVKPLFEAMM--EQNKGVQSGAAMCMAKMVEC--ASDPPVVAFQKLCARICKLLSN 217 (898)
Q Consensus 148 ---A~~lik~~~e~~~~~~~~lL~pL~eaL~--eqnk~VQegAasALAkiIE~--a~d~~~~yL~~LlPRLlkLLks 217 (898)
+..++. -..++.-++..+. .++..+|.+++-+|...|=+ .+..+ ...-++.|.+++++
T Consensus 75 ~dv~~~l~~---------~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I---~~~~~~~L~~~~~~ 139 (157)
T PF11701_consen 75 PDVGSELFL---------SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI---SKNYVSWLKELYKN 139 (157)
T ss_dssp HHHHHHHCC---------TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC---HHHCHHHHHHHTTT
T ss_pred HHHHHHHHh---------hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHcc
Confidence 222211 1235555666666 67899999999999988843 23332 34455666777754
No 263
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=67.01 E-value=21 Score=37.37 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc
Q 002638 119 TKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 119 pkIL~~IlrrLkDpDs--~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a 196 (898)
..|.|.++.+|+-... ..-..-+.++..++..++.. +...|.++..-++..- .+.+.----.+.||..-+.
T Consensus 2 ~eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~----~~~~W~eL~d~Ils~~-~~e~~kA~~IF~~L~~~l~-- 74 (174)
T PF04510_consen 2 REIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDL----QEGGWDELSDCILSLS-ENEPVKAFHIFICLPMPLY-- 74 (174)
T ss_pred cchHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhc----CCCCchhHHHHHHHhh-ccchHHHHHHHHhCCchhh--
Confidence 3567777777765543 23344455555555555422 2345888774443322 3333222236677773332
Q ss_pred CCCCchhHHHHHHHHHHHhcCCc-hhhHHHHH---HHHHHHHhc-c-ccCcccHHHHHHHHHHhh
Q 002638 197 SDPPVVAFQKLCARICKLLSNQN-FMAKASLL---PVVGSLSQV-G-AIAPQSLEPLLQSIHECL 255 (898)
Q Consensus 197 ~d~~~~yL~~LlPRLlkLLks~~-~kaK~alL---~aIgSLA~v-G-a~~~pyld~lLp~L~e~L 255 (898)
++.+.++++.|+|.+.+.|.+|. +....=.| .++...++. . ..-..++..+++.+.+.+
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv 139 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSV 139 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 45567899999999999999983 44443233 333333321 1 111345666666555443
No 264
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=66.90 E-value=1.8e+02 Score=41.34 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=118.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhccc-ccCCchhHHhhHHHHHHHHhcC--CHhHHHHHHHHHHHHHHhcC
Q 002638 121 IISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK-EENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKMVECAS 197 (898)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~-~e~~~~~~~~lL~pL~eaL~eq--nk~VQegAasALAkiIE~a~ 197 (898)
++.-+...|++....++..+..-+-.+....+... .+....++..+...+++...+- +..+-.+.+.++...+++..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ 85 (2341)
T KOG0891|consen 6 VLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTE 85 (2341)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhcc
Confidence 44555667777776666555444444444433321 1111233555556666665433 33333334444444455321
Q ss_pred CCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 002638 198 DPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALH 276 (898)
Q Consensus 198 d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~a 276 (898)
.. .-....+-.+|-.++.+.+...=..+..+++-++..+ -....+++-.+-.+++-+.+..---|-+|+-.+..++..
T Consensus 86 ~~-~~~~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~ 164 (2341)
T KOG0891|consen 86 HD-RKNISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADN 164 (2341)
T ss_pred cc-cchhHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhc
Confidence 11 1112223333333334333322223455566665433 334667777777788877666666677888888999999
Q ss_pred cchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 277 SSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 277 vge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
+|..+-|++..+.+.+-....|...-+|..+..||..-......
T Consensus 165 ~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~ 208 (2341)
T KOG0891|consen 165 VPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQ 208 (2341)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhh
Confidence 99999999999999999999998888999999999887665544
No 265
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=66.80 E-value=28 Score=42.38 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002638 516 KGNWLAIQRQLMQLERQQAHLMNMLQDFM 544 (898)
Q Consensus 516 ~~~l~~Ir~QL~qiE~qQs~l~~lLQ~Fm 544 (898)
.+-+.-.|.-|.=+|+-=..-+.-|...|
T Consensus 373 ~~~~kdf~~RL~yl~~~~q~yikkl~~~l 401 (556)
T PF05918_consen 373 AEKLKDFRERLQYLARGTQAYIKKLKQAL 401 (556)
T ss_dssp -TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566667767665444555555555
No 266
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=66.78 E-value=1.9e+02 Score=31.28 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=100.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhchhc---------hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC
Q 002638 89 NDPKPAVKKESVRLLALVCELHSELT---------STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN 159 (898)
Q Consensus 89 ~s~k~~vRKeAIlLLG~IAEg~gd~I---------~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~ 159 (898)
++.++.+-|.+|.+++.+=...-+.+ =..+..|...|+..+.+..+.||-+|..-+-.+.-..........
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~ 82 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSP 82 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS-
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 35577888888888877766544333 225678888999999999999999999988877776644311000
Q ss_pred -----chhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638 160 -----GTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLS 234 (898)
Q Consensus 160 -----~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA 234 (898)
...+.. +.+-.+.+-. -...+.++ -+.|+.+|+.+|.+++. .-..+..+|++++
T Consensus 83 ~~~~~~~d~SL------~~vp~~Hp~l------~~~~Le~E--------a~~lL~~Ll~~l~~~~i-~~~~~~a~insL~ 141 (239)
T PF11935_consen 83 PRRGSPNDFSL------SSVPPNHPLL------NPQQLEAE--------ANGLLDRLLDVLQSPHI-SSPLLTAIINSLS 141 (239)
T ss_dssp --GGGTTS--G------GGS-TT-SSS-------HHHHHHH--------HHHHHHHHHHHHC-TT---HHHHHHHHHHHH
T ss_pred cccccccCCCH------HHcCCCCCcC------CHHHHHHH--------HHHHHHHHHHHHhhccc-chHHHHHHHHHHH
Confidence 000000 0000000000 00011111 12577788888887762 2234455566665
Q ss_pred hccccCcccHHHHHHHHHHhhCCC--------C----HHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002638 235 QVGAIAPQSLEPLLQSIHECLGST--------D----WATRKAAADALSALALHSSNLVIDGATSTLTVLE 293 (898)
Q Consensus 235 ~vGa~~~pyld~lLp~L~e~Lsdd--------D----W~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE 293 (898)
.+...-+.|+..++++|..+-.+. . ..+||..=-.|..+...-. ..||.+++.++|+
T Consensus 142 ~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~--~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 142 NIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPA--SSPFQGRITQALT 210 (239)
T ss_dssp HHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGG--GGGGHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCC--chhhHHHHHHHHH
Confidence 433456788999999999874432 1 2233333333444444333 2388888888887
No 267
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.09 E-value=6.2e+02 Score=37.61 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 002638 136 MKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLC 208 (898)
Q Consensus 136 VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~Ll 208 (898)
.|.+|.++++...... +-....+...-..++-++|..|....+..+++|..||-.++..-.....+.++..+
T Consensus 1249 Lr~~ci~ll~~~~~~~-d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~l 1320 (3550)
T KOG0889|consen 1249 LRVACIKLLAACMKLS-DFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHL 1320 (3550)
T ss_pred chhHHHHHHHHHHhcc-cccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhH
Confidence 3666666666555554 21112233456678888999998899999999999999999865555556666655
No 268
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=65.72 E-value=30 Score=32.32 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhch---hhHHHHHHHHHHhhcCCChHHHH
Q 002638 62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS---THVTKIISHIVKRLKDSDSGMKE 138 (898)
Q Consensus 62 a~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~---PhLpkIL~~IlrrLkDpDs~VR~ 138 (898)
...++..+..||...+..+|.+|.+.+...++..=+-++.-+..+...|+..+. +.+-..+..+.+.+...-..+++
T Consensus 15 ~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~ 94 (110)
T PF04003_consen 15 PSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSK 94 (110)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888877889999998866545566667788999999999998764 45777777788888777777777
Q ss_pred HHHHHHHHHHH
Q 002638 139 ACRDSIGSLSK 149 (898)
Q Consensus 139 Ac~~tLG~LA~ 149 (898)
.|..-+|+|--
T Consensus 95 l~~~n~~~L~~ 105 (110)
T PF04003_consen 95 LLDLNLGRLDY 105 (110)
T ss_pred HHHHhHHHHHH
Confidence 77777766643
No 269
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=65.41 E-value=1.2e+02 Score=36.38 Aligned_cols=178 Identities=13% Similarity=0.069 Sum_probs=95.8
Q ss_pred ChhhHHHHHHHHHHHHHHhchhc-hhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcc-cccCCchhHHhhHH
Q 002638 92 KPAVKKESVRLLALVCELHSELT-STHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNG-KEENNGTVVGLFVK 168 (898)
Q Consensus 92 k~~vRKeAIlLLG~IAEg~gd~I-~PhLpkIL~-~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~-~~e~~~~~~~~lL~ 168 (898)
+|..=++|-++||+++-.-+..+ .-.+.|=.+ .++..-...|-.+|-.+|-++..|+..---+ ... ... --.++.
T Consensus 277 ~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~Vr-kS~-TlaLVE 354 (832)
T KOG3678|consen 277 DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVR-KSG-TLALVE 354 (832)
T ss_pred CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHh-hcc-chhhhh
Confidence 47777889999999876444433 223333333 3333333457888999999888888654101 000 001 123566
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHH--HHHHHHHHHHhccccCcccHH-
Q 002638 169 PLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKA--SLLPVVGSLSQVGAIAPQSLE- 245 (898)
Q Consensus 169 pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~--alL~aIgSLA~vGa~~~pyld- 245 (898)
||+..+. +..-+ .++.+--..--+.=+.||+.+|++....++. +-+-|.-+.+...+.-...|.
T Consensus 355 Plva~~D-P~~FA------------RD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFse 421 (832)
T KOG3678|consen 355 PLVASLD-PGRFA------------RDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSE 421 (832)
T ss_pred hhhhccC-cchhh------------hhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHH
Confidence 7666652 11111 1111111111223456777788865544432 111122222211111112222
Q ss_pred -HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh
Q 002638 246 -PLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG 284 (898)
Q Consensus 246 -~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py 284 (898)
..++.|.+..++.|-..-|.|-++|..|...++..+.|-
T Consensus 422 IGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~q 461 (832)
T KOG3678|consen 422 IGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQ 461 (832)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhcc
Confidence 247788889999998888999999999999888655543
No 270
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=65.15 E-value=1.4e+02 Score=34.18 Aligned_cols=255 Identities=16% Similarity=0.257 Sum_probs=145.0
Q ss_pred HhHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh
Q 002638 36 LAMVEMKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL 113 (898)
Q Consensus 36 ~~~~eLK~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~ 113 (898)
+-..|+.+.+..+|.++ ...+..+-+.+++.+... .+-..|+... +.+| ..+.+..+...+..
T Consensus 10 KtP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~--------~mK~IL~G~~-e~ep-~~e~v~qLa~Ei~~----- 74 (335)
T PF08569_consen 10 KTPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQ--------QMKEILYGDG-EPEP-NPEQVAQLAQEIYR----- 74 (335)
T ss_dssp --HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHH--------HHHHHHHS-S-S-----HHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHH--------HHHHHhcCCC-CCCC-CHHHHHHHHHHHHH-----
Confidence 44557777777788777 234466666666665543 2233344322 2222 22332222222211
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccc----cCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKE----ENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCM 189 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~----e~~~~~~~~lL~pL~eaL~eqnk~VQegAasAL 189 (898)
..++..++..|..=+...|.-++...+.+.++-.+... +....+++.++.-|+..-..++ .|..|=
T Consensus 75 -----~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d-----ial~~g 144 (335)
T PF08569_consen 75 -----SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD-----IALNCG 144 (335)
T ss_dssp -----HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT-----THHHHH
T ss_pred -----hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc-----ccchHH
Confidence 12345566777777778888777777777776533210 0000112444444444443222 344444
Q ss_pred HHHHHhcCCCC-chh-H-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh----c-cccCcccHHHHHHHHHHhhCCCCHH
Q 002638 190 AKMVECASDPP-VVA-F-QKLCARICKLLSNQNFMAKASLLPVVGSLSQ----V-GAIAPQSLEPLLQSIHECLGSTDWA 261 (898)
Q Consensus 190 AkiIE~a~d~~-~~y-L-~~LlPRLlkLLks~~~kaK~alL~aIgSLA~----v-Ga~~~pyld~lLp~L~e~LsddDW~ 261 (898)
..+-|+++... ..+ | +..+-++++....++|.+-.-+...+..+.. + ...+..+++.+......+|.+++.-
T Consensus 145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 145 DMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 44556554432 111 1 1345568888899999876666666555542 1 1345788889999888999999999
Q ss_pred HHHHHHHHHHHHHHhcc--hHHHhhHHH--HHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638 262 TRKAAADALSALALHSS--NLVIDGATS--TLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 262 vRKaA~EaL~sLA~avg--e~L~Py~~~--~I~~LE~~RfDKvKpVRD~A~eALelWK~La 318 (898)
+|+.++..|+.|..-.. ..+.-|+.+ -++.+-...-|+-|.++ .+|...+|.+.
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq---~eAFhvFKvFV 282 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQ---FEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHH---HHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhh---HHHHHHHHHHH
Confidence 99999999999988776 556677644 46666677779988555 47999999888
No 271
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=64.76 E-value=30 Score=32.19 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChH--HHHHHHHHHHHHHHHH
Q 002638 90 DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSG--MKEACRDSIGSLSKLY 151 (898)
Q Consensus 90 s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~--VR~Ac~~tLG~LA~~l 151 (898)
+..|..|..|..+|+.|+.-|+..-..-.++|+.++.+.|.||... .+--|...|..|....
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999876666789999999999999753 3545555555554444
No 272
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=62.10 E-value=1.1e+02 Score=41.54 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=65.5
Q ss_pred HHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhH
Q 002638 102 LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGV 181 (898)
Q Consensus 102 LLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~V 181 (898)
+|.....+|...+.+|++.|+...-..|+.+++.|++..+..+..+.... +. -.-.+++..|+..+.+.+..-
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f-ds------~~qqeVv~~Lvthi~sg~~~e 489 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF-DS------YCQQEVVGALVTHIGSGNSQE 489 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--H------HHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc-cc------hhHHHHHHHHHHHHcCCcHHH
Confidence 55566677878899999999999999999999999999888777666655 11 123668888888886666554
Q ss_pred HHHHHHHHHHHHHhc
Q 002638 182 QSGAAMCMAKMVECA 196 (898)
Q Consensus 182 QegAasALAkiIE~a 196 (898)
-.+|...|..+++..
T Consensus 490 v~~aL~vL~~L~~~~ 504 (1426)
T PF14631_consen 490 VDAALDVLCELAEKN 504 (1426)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcc
Confidence 467788888888754
No 273
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=61.78 E-value=97 Score=30.69 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHH---HHHHHhhhc--CC------ChhhHHHHHHHH
Q 002638 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATST---LTVLEACRF--DK------IKPVRDSMNEAL 311 (898)
Q Consensus 243 yld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~---I~~LE~~Rf--DK------vKpVRD~A~eAL 311 (898)
-+..++-.|...|.+.+.-++.-|+.+|-.+....++.|.-.+..- |+-+.+.+. |. -+.||+.|.|++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 4568888899999999999999999999999999887777776444 444444444 21 145999988777
Q ss_pred HH
Q 002638 312 QL 313 (898)
Q Consensus 312 el 313 (898)
.+
T Consensus 115 ~~ 116 (122)
T cd03572 115 KA 116 (122)
T ss_pred HH
Confidence 76
No 274
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=61.67 E-value=13 Score=27.83 Aligned_cols=28 Identities=43% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 247 LLQSIHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 247 lLp~L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
.++.|.++|.+++..+++.|+.+|..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677778888889999999999998875
No 275
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.52 E-value=2.6e+02 Score=30.98 Aligned_cols=155 Identities=14% Similarity=0.196 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHhcC-----CCC--C----HHHHHHHHhhhcCCCChhh-HHHHHHHHHHHHHHhchhchhhHHHHH
Q 002638 55 RDTHQIAIEDLEKTIQTL-----SQE--S----LPMLLNCLYESSNDPKPAV-KKESVRLLALVCELHSELTSTHVTKII 122 (898)
Q Consensus 55 rDT~k~Aa~eLD~Ia~~L-----~pe--~----Lp~fLs~L~es~~s~k~~v-RKeAIlLLG~IAEg~gd~I~PhLpkIL 122 (898)
..|...+++-|++++... ++. . +-..|+.+.....++++.. -..+...-..+++.|...-.+.|.+|+
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il 155 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARIL 155 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 335555666666665432 222 1 3334556665555555211 233444445555556555567888888
Q ss_pred HHHHH-hhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc
Q 002638 123 SHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV 201 (898)
Q Consensus 123 ~~Ilr-rLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~ 201 (898)
....+ +.++.+.-++++|.- |...++- ++....+--|++.|...-.-+|......|..++...+-. .
T Consensus 156 ~~ya~~~fr~~~dfl~~v~~~----l~~~f~P-------~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~ 223 (262)
T PF14225_consen 156 SSYAKGRFRDKDDFLSQVVSY----LREAFFP-------DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-S 223 (262)
T ss_pred HHHHhcCCCCHHHHHHHHHHH----HHHHhCc-------hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-C
Confidence 75554 488877777665543 4444411 224456666788886667789999999999999875322 3
Q ss_pred hhHHHHHHHHHHHhcCCchh
Q 002638 202 VAFQKLCARICKLLSNQNFM 221 (898)
Q Consensus 202 ~yL~~LlPRLlkLLks~~~k 221 (898)
+....|+--+.++|.++...
T Consensus 224 ~~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 224 PHGADLISPLLRLLQTDLWM 243 (262)
T ss_pred CcchHHHHHHHHHhCCccHH
Confidence 36667888889999887665
No 276
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.04 E-value=31 Score=39.20 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=43.8
Q ss_pred HhhhcCCCChhhHHHHHH-HHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 84 LYESSNDPKPAVKKESVR-LLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 84 L~es~~s~k~~vRKeAIl-LLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
|.+...++.|.+|+.|+. ++|..++ -...+.-|=...+..|.+.++|+++ -.-++.+++.++..-
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 344455778899999985 4455555 3455666777888999999999998 333445555555544
No 277
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=60.70 E-value=1.5e+02 Score=28.69 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=65.9
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHHHHhcchHHHhhHH
Q 002638 210 RICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECL---GSTDWATRKAAADALSALALHSSNLVIDGAT 286 (898)
Q Consensus 210 RLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~L---sddDW~vRKaA~EaL~sLA~avge~L~Py~~ 286 (898)
++-++.++........++.-|.... .-...+..+|..|...| ....|...--|+..|-.|+..-++.|...+.
T Consensus 7 ~v~eAT~~d~~gp~~~~l~eIa~~t----~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~ 82 (125)
T PF01417_consen 7 KVREATSNDPWGPPGKLLAEIAQLT----YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELR 82 (125)
T ss_dssp HHHHHTSSSSSS--HHHHHHHHHHT----TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHH----hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3445556655555666666665542 11256778999999999 6688999999999999999999987777765
Q ss_pred HHH---HHHHhhhc-CC-----ChhhHHHHHHHHHHH
Q 002638 287 STL---TVLEACRF-DK-----IKPVRDSMNEALQLW 314 (898)
Q Consensus 287 ~~I---~~LE~~Rf-DK-----vKpVRD~A~eALelW 314 (898)
.-+ +.|...++ |. -..||+.|.+.+++.
T Consensus 83 ~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 83 DHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHh
Confidence 444 44444444 32 123999988887764
No 278
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=60.46 E-value=44 Score=31.94 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhc
Q 002638 202 VAFQKLCARICKLLS-NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHS 277 (898)
Q Consensus 202 ~yL~~LlPRLlkLLk-s~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~av 277 (898)
.++..|+|-+.+.|+ +.....+.++|-.++.++.........++.+|..+......... .+.+.-||..|...-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 478899999999999 66777888999999988754445566777777777776666544 566777777777555
No 279
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.71 E-value=1.3e+02 Score=36.93 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHHHhcc-cccCCchhHHhh
Q 002638 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD-----SDSGMKEACRDSIGSLSKLYLNG-KEENNGTVVGLF 166 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkD-----pDs~VR~Ac~~tLG~LA~~lik~-~~e~~~~~~~~l 166 (898)
|..--.-+.++-.+|+..++.++.|=.+++..+..++.= ..+.+-+.|-+++--+++.+-+. +.+...=...+|
T Consensus 571 P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnlafL~~ef 650 (748)
T KOG4541|consen 571 PKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNLAFLSREF 650 (748)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccccccHHHHHHHH
Confidence 334445677888899999999999989999998865443 44555555666665555554321 111111234569
Q ss_pred HHHHHHHH--hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhh
Q 002638 167 VKPLFEAM--MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMA 222 (898)
Q Consensus 167 L~pL~eaL--~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~ka 222 (898)
|+.+|+.+ .+.+...-.+||.||..+|-+.+.. .+.++..|+.-=.+|.++-
T Consensus 651 L~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~----y~elvneL~skq~np~~~q 704 (748)
T KOG4541|consen 651 LRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNL----YQELVNELISKQANPNFKQ 704 (748)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHH----HHHHHHHHHhhccChHHHH
Confidence 99999998 3557788889999999999765443 4556665555445555543
No 280
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=58.54 E-value=13 Score=27.91 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002638 121 IISHIVKRLKDSDSGMKEACRDSIGSLS 148 (898)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~tLG~LA 148 (898)
+++.+++.|+.+++.|+..++++|+.|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777788889999999999999886
No 281
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=57.53 E-value=2e+02 Score=29.88 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=69.1
Q ss_pred HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhc-CC-CCchh--------------------HHHHHHHHHHHhcCCch
Q 002638 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA-SD-PPVVA--------------------FQKLCARICKLLSNQNF 220 (898)
Q Consensus 163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a-~d-~~~~y--------------------L~~LlPRLlkLLks~~~ 220 (898)
+..++..|+....|+--.|-..|+.||..++... .. ...++ -....|+++++|.-+.|
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~y 84 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPEY 84 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccHHH
Confidence 3344445555555666677888888888888432 10 00000 22456777777776655
Q ss_pred hhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHhcc---hHHHhhHHHHHHHHHhh
Q 002638 221 MAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLG--STDWATRKAAADALSALALHSS---NLVIDGATSTLTVLEAC 295 (898)
Q Consensus 221 kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Ls--ddDW~vRKaA~EaL~sLA~avg---e~L~Py~~~~I~~LE~~ 295 (898)
. ...+.+.+. .+|.....-+...-..|++++. +.+.......+.+|..++..-. -.+.|.+.-+-..|+..
T Consensus 85 ~-~~ll~Glv~---S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~ 160 (193)
T PF12612_consen 85 R-YSLLSGLVV---SAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSSG 160 (193)
T ss_pred H-HHHHhHHHh---cCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhCc
Confidence 4 222222332 3443333344444455556554 4455555666666666555432 23445555544455554
Q ss_pred hcCC
Q 002638 296 RFDK 299 (898)
Q Consensus 296 RfDK 299 (898)
-|+.
T Consensus 161 ~~~~ 164 (193)
T PF12612_consen 161 VFDS 164 (193)
T ss_pred chhc
Confidence 5554
No 282
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.53 E-value=1.4e+02 Score=40.01 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred hHHHHHHHHhcCCHhHHHHHHHHHHHHHHh-cCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH------Hh---
Q 002638 166 FVKPLFEAMMEQNKGVQSGAAMCMAKMVEC-ASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSL------SQ--- 235 (898)
Q Consensus 166 lL~pL~eaL~eqnk~VQegAasALAkiIE~-a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSL------A~--- 235 (898)
.+..+++.-.+..+.+-.-++.||.-++.+ ....+...+..++.-+...-+...-. +.-+.+||-+ ..
T Consensus 887 ml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~Qktdl--NISltAi~lfWtvsDfl~~km 964 (1610)
T KOG1848|consen 887 MLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDL--NISLTAIGLFWTVSDFLKNKM 964 (1610)
T ss_pred HHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccc--cccHHHHHHHHHHHHHHHhhh
Confidence 334444444455666666688888888865 45555666666666555443321100 1223333332 11
Q ss_pred --ccc-------------------cCcccHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh
Q 002638 236 --VGA-------------------IAPQSLE-PLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG 284 (898)
Q Consensus 236 --vGa-------------------~~~pyld-~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py 284 (898)
.|. ..+..+. .++-.|.++..|+-..+|+.||++|-.|..+.|.+|.+-
T Consensus 965 ~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~ 1035 (1610)
T KOG1848|consen 965 FSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTN 1035 (1610)
T ss_pred hccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChh
Confidence 110 0111111 122345556666667899999999999999999988883
No 283
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=57.13 E-value=1.3e+02 Score=34.30 Aligned_cols=58 Identities=9% Similarity=0.206 Sum_probs=43.8
Q ss_pred chhchhhHHHHHHHHHHhhcCCChHHHHH--HHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 111 SELTSTHVTKIISHIVKRLKDSDSGMKEA--CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 111 gd~I~PhLpkIL~~IlrrLkDpDs~VR~A--c~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
.+.+.|+|..++..=+.+..|+....|.- |-.++..++... | ..++...|.|+++.+-
T Consensus 48 ~~~~~~fl~~li~~Ev~~t~~~~tLFRgNSlaTK~m~~y~k~~---G----~~YL~~tL~pvI~~i~ 107 (313)
T cd05394 48 HQKLVPFVAAVAELDLKDTQEANTIFRGNSLATRCLDEMMKIV---G----KHYLKVTLKPVLDEIC 107 (313)
T ss_pred cCcHHHHHHHHHHHHHHhcCCHhhHhhcCcHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHH
Confidence 34567888888888888899998888864 445677777655 2 3678888999998884
No 284
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=56.63 E-value=33 Score=34.73 Aligned_cols=132 Identities=11% Similarity=0.035 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-cCCHhHHHHHHHHHHHHHHhcCCCCchh--HHHHH
Q 002638 132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMVECASDPPVVA--FQKLC 208 (898)
Q Consensus 132 pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-eqnk~VQegAasALAkiIE~a~d~~~~y--L~~Ll 208 (898)
..+.||..+.-++.++.... + +.+...+...++.+. +....-...|+.+|+.+....++..... -+.++
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~-~-------~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~ 88 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAA-R-------EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFL 88 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred CCHhHHHHHHHHHHHHHHHh-H-------HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence 45679999999888885322 1 334555555555553 2222355567777777766543322221 11345
Q ss_pred HHHHHHhc--CCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhC-CCCHH-HHHHHHHHHH
Q 002638 209 ARICKLLS--NQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLG-STDWA-TRKAAADALS 271 (898)
Q Consensus 209 PRLlkLLk--s~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Ls-ddDW~-vRKaA~EaL~ 271 (898)
+-+..++. ..+.....+++.+|++...-..--....+..++-|.+.++ +++-. +|-.|+=.|.
T Consensus 89 ~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 89 ESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 55566666 5677777889999988642111112234455666667775 44444 6666655554
No 285
>PRK14707 hypothetical protein; Provisional
Probab=56.51 E-value=8.2e+02 Score=35.11 Aligned_cols=143 Identities=19% Similarity=0.223 Sum_probs=85.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch---hch
Q 002638 46 LTSLSKLADRDTHQIAIEDLEKTIQ-------TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE---LTS 115 (898)
Q Consensus 46 l~~L~KLsDrDT~k~Aa~eLD~Ia~-------~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd---~I~ 115 (898)
+..|.|=.+.+..+.|+..|..... .|+..++.++|+.|. ||+.+..|..++..||..... ...
T Consensus 547 lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLS------KWP~~~aC~~Aa~~LA~~l~~~~~lr~ 620 (2710)
T PRK14707 547 LKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALS------KWPDTAVCAEAVNALAERLVDEPDLRK 620 (2710)
T ss_pred HHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhc------cCCCcHHHHHHHHHHHHHhccChhhhh
Confidence 3445555788888888877776532 233334566666654 677788888888888877642 224
Q ss_pred hhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHHHH
Q 002638 116 THVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 116 PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAkiI 193 (898)
.+-++=+..++..|.- |+. ..|..++.+|+.++..... .-..+-..=+..++.+|.- +...+=..|+.+|+..+
T Consensus 621 ~l~~q~lan~lNALSKWP~s---~~C~~Aa~rLA~rl~~~~~-l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rL 696 (2710)
T PRK14707 621 ELDPVDVTNVLNALSKWPGT---EVCAEVARLLAGRLVGDRL-LRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAERL 696 (2710)
T ss_pred hccHHHHHHHHhhhhcCCCc---hHHHHHHHHHHHHhhhchh-hHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Confidence 4456667777777733 333 5788888899888754310 0011223345566667742 33444445777777777
Q ss_pred HhcCC
Q 002638 194 ECASD 198 (898)
Q Consensus 194 E~a~d 198 (898)
...+.
T Consensus 697 a~~~~ 701 (2710)
T PRK14707 697 AADPG 701 (2710)
T ss_pred hcChh
Confidence 65433
No 286
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=56.35 E-value=5.3e+02 Score=32.84 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=36.3
Q ss_pred chhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Q 002638 31 SLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLY 85 (898)
Q Consensus 31 ~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~ 85 (898)
.-+..+.+..|+.+|..+||||+|-....++ ++|+.+-.+.+--.+.-.|..+.
T Consensus 309 ~~~~sE~l~rl~rkv~g~LNKLSdaNi~~I~-~~i~~Ly~~~sr~~v~~sLtk~l 362 (822)
T KOG2141|consen 309 TSSESEQLQRLRRKVNGSLNKLSDANIIKII-AGIAELYMNNSRYDVTSSLTKLL 362 (822)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHHH
Confidence 4456678899999999999999987655554 45666655444333444555443
No 287
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=56.01 E-value=5.8e+02 Score=33.22 Aligned_cols=138 Identities=11% Similarity=0.071 Sum_probs=94.4
Q ss_pred HHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-----chh-hHHHHH
Q 002638 49 LSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-----TST-HVTKII 122 (898)
Q Consensus 49 L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-----I~P-hLpkIL 122 (898)
+....|.+++++|=+.|.+.-. .+.|...|..+.-.. .-.-..|-.|+.-|.+-+..|+.. +.| +=..|.
T Consensus 12 ~aqs~~p~s~k~AE~~Lrqwe~---q~gF~~kL~~I~~~~-~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR 87 (947)
T COG5657 12 LAQSPDPPSVKCAEERLRQWEK---QHGFALKLLSINLSA-FNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIR 87 (947)
T ss_pred hhcCCCCchHhhHHHHHHhhhc---cccHHHHHHHHHhcc-ccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHH
Confidence 3455789999999999998776 334655555554322 234668999999999999988843 222 111344
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcC
Q 002638 123 SHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECAS 197 (898)
Q Consensus 123 ~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~ 197 (898)
-.++..+--.+-...-+-+.+++.+|..-. .+.|+.+++-|+..|.+.+-.+-.+...++..++...+
T Consensus 88 ~~l~~lii~s~n~l~iq~a~avs~IA~~Df-------PdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 88 DELFSLIISSSNQLQIQNALAVSRIARLDF-------PDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHhccC-------cccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh
Confidence 455555444444444456667777776652 24599999999999988777788888888888887754
No 288
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=55.52 E-value=1.1e+02 Score=32.54 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=47.5
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc
Q 002638 177 QNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG 237 (898)
Q Consensus 177 qnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG 237 (898)
+...+-.-....++++.+..+..-.+++.+++..+.++-.+++|..|..+=.|||+.+. +|
T Consensus 12 ~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 12 RYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 44455555677777777777665667899999999999999999999988889999864 45
No 289
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=55.21 E-value=3.7e+02 Score=30.65 Aligned_cols=135 Identities=12% Similarity=0.011 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHH-h-cCCCCchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHh-cc-ccCcccHHHHHHHHHHhhCC
Q 002638 183 SGAAMCMAKMVE-C-ASDPPVVAFQKLCARICKLLSNQ-NFMAKASLLPVVGSLSQ-VG-AIAPQSLEPLLQSIHECLGS 257 (898)
Q Consensus 183 egAasALAkiIE-~-a~d~~~~yL~~LlPRLlkLLks~-~~kaK~alL~aIgSLA~-vG-a~~~pyld~lLp~L~e~Lsd 257 (898)
+++..=|.++++ . ......|.=-.++-||.++|+-. .-.+..-+|++...++. .| ..+...+....|.|+.++..
T Consensus 29 is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~ 108 (307)
T PF04118_consen 29 ISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSY 108 (307)
T ss_pred HHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHH
Confidence 445555666666 2 22222344446889999999853 22344456888777764 56 55677788888999999988
Q ss_pred CCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHh
Q 002638 258 TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKI 317 (898)
Q Consensus 258 dDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~L 317 (898)
-.-++|-.-++.+-....-+|..+.|.+..+|-.+....-|...++-+-+..-++.++..
T Consensus 109 asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 109 ASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred HHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 888999999999988877888899999988888887666666666666655556555544
No 290
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=55.11 E-value=85 Score=30.81 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhH-H-HHHHHHHhhhcC---CChhhHHHHHHHHHHHHH
Q 002638 242 QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGA-T-STLTVLEACRFD---KIKPVRDSMNEALQLWKK 316 (898)
Q Consensus 242 pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~-~-~~I~~LE~~RfD---KvKpVRD~A~eALelWK~ 316 (898)
......+..|...|.+.+..+...|+..|-.+....|..|...+ . ..+.-|...-.. ....||+-+++.++-|..
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34557778888889999999999999999999999997665443 2 233333333322 356799999999999997
Q ss_pred hh
Q 002638 317 IA 318 (898)
Q Consensus 317 La 318 (898)
--
T Consensus 113 ~f 114 (133)
T cd03561 113 SF 114 (133)
T ss_pred Hh
Confidence 54
No 291
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=55.08 E-value=1.1e+02 Score=31.96 Aligned_cols=136 Identities=10% Similarity=0.057 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHH
Q 002638 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS--GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPL 170 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs--~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL 170 (898)
-.+|..|..+|..+. .+...-.|++|.. +.+.+.+..+.. ..-....++.-+++.-+ .- ..+...++.-|
T Consensus 21 DrvR~~A~~~l~~ll-~~~~~~~~~ip~~-~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL-~~-----~~y~~~ll~Gl 92 (193)
T PF12612_consen 21 DRVREVAGKCLQRLL-HSQDPTIPHIPHR-EELQDIFPSESEASLNWSSSSEYFPRLVKLL-DL-----PEYRYSLLSGL 92 (193)
T ss_pred HHHHHHHHHHHHHHh-cCCCccccCCCcH-HHHHHHcccccccccccCCHHHHHHHHHHHh-cc-----HHHHHHHHhHH
Confidence 457888888887777 3332222333311 222222222211 11233444555555333 21 12333344444
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHHhcc
Q 002638 171 FEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQN--FMAKASLLPVVGSLSQVG 237 (898)
Q Consensus 171 ~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~--~kaK~alL~aIgSLA~vG 237 (898)
+-..+.-+..+...|..||..++.+. ......+..++..|+.+|++.. -++-..++..+.-+...|
T Consensus 93 v~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~ 160 (193)
T PF12612_consen 93 VVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSSG 160 (193)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhCc
Confidence 44446778888889999999999754 2223457778888888887542 222235666666666544
No 292
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=54.91 E-value=1e+02 Score=31.07 Aligned_cols=94 Identities=21% Similarity=0.302 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhcCCC-----CCHHHHHHH--------HhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHH
Q 002638 56 DTHQIAIEDLEKTIQTLSQ-----ESLPMLLNC--------LYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKII 122 (898)
Q Consensus 56 DT~k~Aa~eLD~Ia~~L~p-----e~Lp~fLs~--------L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL 122 (898)
.++..|++-|+.+.+.-++ +..+.++.. |.....+..+.+=..+++++.++...+...+...++-++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666788888877775432 111133333 333333444666677999999999999999999999999
Q ss_pred HHHHHhhcCCCh---HHHHHHHHHHHHHHH
Q 002638 123 SHIVKRLKDSDS---GMKEACRDSIGSLSK 149 (898)
Q Consensus 123 ~~IlrrLkDpDs---~VR~Ac~~tLG~LA~ 149 (898)
+.|+.++-+++. .-|..+.+++..+++
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 999997666443 567778877777664
No 293
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.58 E-value=67 Score=31.74 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh------HHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638 241 PQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG------ATSTLTVLEACRFDKIKPVRDSMNEALQLW 314 (898)
Q Consensus 241 ~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py------~~~~I~~LE~~RfDKvKpVRD~A~eALelW 314 (898)
.......+..|...|.+.+..+-..|+..|-.+....|+.|... +..+.+++.....+...+||+-+++.++-|
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 34456778888899999999999999999999999999777655 344444444333333334999999999999
Q ss_pred HHhh
Q 002638 315 KKIA 318 (898)
Q Consensus 315 K~La 318 (898)
..--
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8654
No 294
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.87 E-value=4.5e+02 Score=33.85 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc--CCHhHHHHHHHHHHHHHH
Q 002638 118 VTKIISHIVKRLKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKGVQSGAAMCMAKMVE 194 (898)
Q Consensus 118 LpkIL~~IlrrLkDpD-s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e--qnk~VQegAasALAkiIE 194 (898)
-..-++.++.|+.... ..=|..|+.+|-.+++.| +. .+...-++||+..|.. .++..-..|.-.|.-++-
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY-R~------~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY-RE------EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH-HH------HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 3445566666665554 455899999999999999 33 4466789999999942 477766666666666653
Q ss_pred hcC------CCC--ch---h-------HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cc---ccCcccHHHHHHHHH
Q 002638 195 CAS------DPP--VV---A-------FQKLCARICKLLSNQNFMAKASLLPVVGSLSQ-VG---AIAPQSLEPLLQSIH 252 (898)
Q Consensus 195 ~a~------d~~--~~---y-------L~~LlPRLlkLLks~~~kaK~alL~aIgSLA~-vG---a~~~pyld~lLp~L~ 252 (898)
..+ +.- .. . -+..+..++..+...+|.+|-.++.+|.++.. -+ ....-..+.-+..|.
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 321 111 00 0 12456777888888899999999999999863 23 111112223344455
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhh---HHHHHHHHH-hhhcCC
Q 002638 253 ECLGSTDWATRKAAADALSALALHSS--NLVIDG---ATSTLTVLE-ACRFDK 299 (898)
Q Consensus 253 e~LsddDW~vRKaA~EaL~sLA~avg--e~L~Py---~~~~I~~LE-~~RfDK 299 (898)
+.|.|.--.+|-.|+=.|..+...-+ +++.-| +.++..+++ .--.|-
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 77777777788888888888877776 555544 566666665 233454
No 295
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=52.46 E-value=3.9e+02 Score=30.22 Aligned_cols=233 Identities=15% Similarity=0.141 Sum_probs=125.0
Q ss_pred HHHHcCC-ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh----chh-----
Q 002638 47 TSLSKLA-DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL----TST----- 116 (898)
Q Consensus 47 ~~L~KLs-DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~----I~P----- 116 (898)
..|.+++ +.+.+..+..-.+.|.+ ..+..|+...++.+......|+++|..++...+.. +..
T Consensus 31 ~~l~~ls~~~~~~~~g~~l~~~iL~--------~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~ 102 (330)
T PF11707_consen 31 LLLKKLSSDLSFQSYGLELIRSILQ--------NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFS 102 (330)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHH--------HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCc
Confidence 3445554 34344455544444443 44777877777778888889999999999944422 222
Q ss_pred --hHHHHHHHHHHhhcCCC------hHHHHHHHHHHHHHHHHHhcccccCCchh--HHhhHHHHHHHHhcCCHhHHHHHH
Q 002638 117 --HVTKIISHIVKRLKDSD------SGMKEACRDSIGSLSKLYLNGKEENNGTV--VGLFVKPLFEAMMEQNKGVQSGAA 186 (898)
Q Consensus 117 --hLpkIL~~IlrrLkDpD------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~--~~~lL~pL~eaL~eqnk~VQegAa 186 (898)
-|++++..=.+...+.. +.||.+...-+-.+.... .+. -..+. -..++..++..|......+..-..
T Consensus 103 ~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~-~~~--~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL 179 (330)
T PF11707_consen 103 LKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSG-DPE--LKRDLLSQKKLMSALFKGLRKDPPETVILIL 179 (330)
T ss_pred hhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccC-CHH--HHHHHHHcCchHHHHHhcccCCCHHHHHHHH
Confidence 23333322221122211 288888777665555544 110 00000 112367777777655555554455
Q ss_pred HHHH-HHHHhc--CCCC-chhHH-HHHHHHHHHhcCCch----hhHHHHHHHHHHHH---hccccCc-------------
Q 002638 187 MCMA-KMVECA--SDPP-VVAFQ-KLCARICKLLSNQNF----MAKASLLPVVGSLS---QVGAIAP------------- 241 (898)
Q Consensus 187 sALA-kiIE~a--~d~~-~~yL~-~LlPRLlkLLks~~~----kaK~alL~aIgSLA---~vGa~~~------------- 241 (898)
.+|. .|+++. +... ..+++ ..+.+|..+...... .+...+.+.+..+. ..|-.++
T Consensus 180 ~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~ 259 (330)
T PF11707_consen 180 ETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGV 259 (330)
T ss_pred HHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccc
Confidence 5554 344432 1110 12344 467778887776655 45555555555543 1221111
Q ss_pred ---------ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHH
Q 002638 242 ---------QSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLE 293 (898)
Q Consensus 242 ---------pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE 293 (898)
+.-..++-.++..|...+-. .-.+.+..|..+.||.+.||+..+-..++
T Consensus 260 ~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~---~q~~Lvl~Il~~~PeLva~Y~~~~~~~~~ 317 (330)
T PF11707_consen 260 PVTINNKSFKINNKLLLNLLKKLKPWEDD---RQQELVLKILKACPELVAPYFNNLPYSLE 317 (330)
T ss_pred cccccCCCCCcccHHHHHHHHHCCCCccH---HHHHHHHHHHHHChHHHHHHHHhhhhhCC
Confidence 22234455555566542211 23678999999999999999887755544
No 296
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.02 E-value=5.4e+02 Score=31.69 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=103.4
Q ss_pred hhhHHHHHHHHHHhhcCCC------------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc--CCHh
Q 002638 115 STHVTKIISHIVKRLKDSD------------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME--QNKG 180 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpD------------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e--qnk~ 180 (898)
.||..+++..+.++++=|. ...|-...+.+.-.+.-+ + -.+.++.++..+.+ +...
T Consensus 335 rpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~ii---g-------s~e~lk~~~~~l~e~~~~We 404 (559)
T KOG2081|consen 335 RPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFII---G-------SDECLKQMYIRLKENNASWE 404 (559)
T ss_pred HHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHh---C-------cHHHHHHHHHHHccCCCchH
Confidence 6888888888888877554 356777777777766666 2 13455566666644 4567
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhH--HHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCC
Q 002638 181 VQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAK--ASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGST 258 (898)
Q Consensus 181 VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK--~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsdd 258 (898)
.-+||.-+|..+..+.... =+.++|.+++++-+...+++ ...+-.||.+...=+.-+..++.++..+...+...
T Consensus 405 ~~EAaLF~l~~~~~~~~~~----e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~ 480 (559)
T KOG2081|consen 405 EVEAALFILRAVAKNVSPE----ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLK 480 (559)
T ss_pred HHHHHHHHHHHHhccCCcc----ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhc
Confidence 7789999999999876322 23588888888887665544 34555566654321234556666677777776664
Q ss_pred CHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH
Q 002638 259 DWATRKAAADALSALALHSSNLVIDGATSTLT 290 (898)
Q Consensus 259 DW~vRKaA~EaL~sLA~avge~L~Py~~~~I~ 290 (898)
. .--+|+-++..|....-....++++++..
T Consensus 481 ~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~ 510 (559)
T KOG2081|consen 481 R--LASAAALAFHRICSACRVQMTCLIPSLLE 510 (559)
T ss_pred c--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4 44566667777777766555555444433
No 297
>PRK09169 hypothetical protein; Validated
Probab=51.59 E-value=4.8e+02 Score=37.17 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=108.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHH-------HHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH---Hhchh
Q 002638 44 KILTSLSKLADRDTHQIAIEDLEK-------TIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCE---LHSEL 113 (898)
Q Consensus 44 rll~~L~KLsDrDT~k~Aa~eLD~-------Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAE---g~gd~ 113 (898)
.++..|.|..+....+.|+..|-. ....+++..+.+.|..|.--. ....-|+++..+.+.+++ ....+
T Consensus 671 N~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp--~~~acr~A~~~LA~rL~~~~~l~~a~ 748 (2316)
T PRK09169 671 NALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWP--EEEACRAAAEALAGRLAADADLRQAM 748 (2316)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhcc--CccHHHHHHHHHHHHHhcChHHHhhc
Confidence 345677888888777777766632 234566656777777776322 223456666666666665 22233
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI 193 (898)
-...|...+..+-+-..+ .+|..++-.|+..+...+ .-|..| +..--.-.+++|++++
T Consensus 749 ~aQ~lAnsLNaLsKwp~~------~~c~~a~~~La~~lg~~~-----~p~~~f-----------~~~~laq~aNa~aR~~ 806 (2316)
T PRK09169 749 NPQGLANSLNALSKWPQE------PACQQAALLLAERLGSAG-----LPFRTF-----------TMAGLAQLANAMARLI 806 (2316)
T ss_pred CHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccCC-----Cchhhc-----------CHHHHHHHHHHHHHHH
Confidence 344566666666555432 245555555666652211 113322 1222234788899998
Q ss_pred HhcCCCC-chh---HHHHHHHHHHHhcCCchhhHHHHHHHHHHHH----hcc--ccCcccHHHHHHHHHHhhCCCCHHHH
Q 002638 194 ECASDPP-VVA---FQKLCARICKLLSNQNFMAKASLLPVVGSLS----QVG--AIAPQSLEPLLQSIHECLGSTDWATR 263 (898)
Q Consensus 194 E~a~d~~-~~y---L~~LlPRLlkLLks~~~kaK~alL~aIgSLA----~vG--a~~~pyld~lLp~L~e~LsddDW~vR 263 (898)
..+.+.. ... ...-+..|...|+.-.-....+=..-|+.|+ .++ ..+.+....-|..|.....+. .+|
T Consensus 807 ~~~~~~~~~~~~~~~~~~L~~LA~hL~~~~~~~~~a~~~~i~~ifKalas~~l~d~lr~La~~gL~Rl~~L~~~t--~~r 884 (2316)
T PRK09169 807 LKLEDQDDEEDLALARARLRELAAHLDLRPERLEQADARDIAVLFKALASARLKDGLRLLARPGLNRLATLHRAT--GFR 884 (2316)
T ss_pred hhccccccchhhHHHHHHHHHHHHHhccCchhhhhccchhHHHHHHHHHhccchhhhhhhhHHHHHHHHHHhhcc--CCC
Confidence 6543221 122 2333444444444221111111111233333 222 122222223333333332221 224
Q ss_pred HHHHHHHHHHHHhc-----chHHHhhHHHHHHHHH
Q 002638 264 KAAADALSALALHS-----SNLVIDGATSTLTVLE 293 (898)
Q Consensus 264 KaA~EaL~sLA~av-----ge~L~Py~~~~I~~LE 293 (898)
-.-+|+|++|+..+ ...|.+|..+.+++|+
T Consensus 885 ~~~LEt~g~L~~gLLPlaRspeL~~~r~~aLr~l~ 919 (2316)
T PRK09169 885 EDNLETLGNLCAGLLPLARSPELKAHRADALRLLE 919 (2316)
T ss_pred CCcHhHHHHHHhhhcccccChhhHHhHHHHHHHHh
Confidence 44466676665433 2446777777777766
No 298
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=51.50 E-value=1.5e+02 Score=29.88 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=53.6
Q ss_pred HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc---ccC
Q 002638 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG---AIA 240 (898)
Q Consensus 164 ~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG---a~~ 240 (898)
.++-.-++..|...+..||..|..||-..=. +++.+.-..|..+++...|+- -+.++.... .+-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~-------~~l~pY~d~L~~Lldd~~frd------eL~~f~~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD-------PYLTPYKDNLENLLDDKTFRD------ELTTFNLSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHhHHHHHHHHcCcchHHH------HHHhhcccCCcCCCC
Confidence 4455556677788999999999999877433 366667788888899877762 333433211 234
Q ss_pred cccHHHHHHHHHHhh
Q 002638 241 PQSLEPLLQSIHECL 255 (898)
Q Consensus 241 ~pyld~lLp~L~e~L 255 (898)
..+-+.+||.++.+|
T Consensus 83 ~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 83 EEHRPELMPVVLRIL 97 (141)
T ss_pred HHHHhHHHHHHHHHH
Confidence 677778888777664
No 299
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=51.21 E-value=1.2e+02 Score=30.00 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHH---HHHHHHh--hcC
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKI---ISHIVKR--LKD 131 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkI---L~~Ilrr--LkD 131 (898)
|--..++||-++... ++..+.-++.+|...+++..+.|+--|+++|..+|+.......-.+.+= |..+..- --|
T Consensus 17 ~pgy~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 17 TPGYLYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred CchHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 445667777777764 4456888899999888888899999999999999987664433322222 2222211 122
Q ss_pred C------ChHHHHHHHHHHHHHH
Q 002638 132 S------DSGMKEACRDSIGSLS 148 (898)
Q Consensus 132 p------Ds~VR~Ac~~tLG~LA 148 (898)
| ...||.+|-+++..|.
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHh
Confidence 2 2488888888877664
No 300
>PRK14707 hypothetical protein; Provisional
Probab=51.08 E-value=8.3e+02 Score=35.06 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=85.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH---hchh
Q 002638 44 KILTSLSKLADRDTHQIAIEDLEKTIQ-------TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL---HSEL 113 (898)
Q Consensus 44 rll~~L~KLsDrDT~k~Aa~eLD~Ia~-------~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg---~gd~ 113 (898)
.++..|.|..+....+.|+..|..-+. .|++..+.+.|+.|. ||+....|..+...+++. +.+.
T Consensus 713 N~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a~~aQevANaLNALS------KWPd~~~C~~AA~aLA~rLa~~~~L 786 (2710)
T PRK14707 713 NALNALSKWPRTPVCAAVASALAARVVAEPRLRKAFDAQQVATALNALS------KWPDNQACAAAANTLAERQLREPDV 786 (2710)
T ss_pred HHHhhhhcCCCcHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHhh------cCCCchHHHHHHHHHHHHHhhCcch
Confidence 456677777888888888776654443 344544677777776 566666666666666655 3333
Q ss_pred chhhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc-CCHhHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKD-SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME-QNKGVQSGAAMCMAK 191 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e-qnk~VQegAasALAk 191 (898)
....-++=++..+..|.- |+ ...|..+...|+..+..+. ..-..+-.+=+-..+.+|.- ++..+=..|+.+|+.
T Consensus 787 r~aL~pQ~vAn~LNALSKWPe---~~~Cr~AA~~LA~rLa~dp-~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~ 862 (2710)
T PRK14707 787 RDVLKPREMTNALNALSKWPD---TPACAAAASALAARVADDP-RLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAE 862 (2710)
T ss_pred hhhcCHHHHHHHHHHhhcCCC---chHHHHHHHHHHHHHhcCh-hHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 333446667788888743 33 4566666777777774431 00112223344455566632 344455567888887
Q ss_pred HHHhcC
Q 002638 192 MVECAS 197 (898)
Q Consensus 192 iIE~a~ 197 (898)
-+...+
T Consensus 863 RLa~e~ 868 (2710)
T PRK14707 863 RLADEP 868 (2710)
T ss_pred HHhcCh
Confidence 776543
No 301
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=51.04 E-value=2.2e+02 Score=36.04 Aligned_cols=238 Identities=14% Similarity=0.152 Sum_probs=123.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh-chhhHHHHHH---------
Q 002638 54 DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-TSTHVTKIIS--------- 123 (898)
Q Consensus 54 DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-I~PhLpkIL~--------- 123 (898)
|..+.....=.|.+++. .+..+|.||+-|.+...+.-. - ....|..++.++... =.|-+..|+.
T Consensus 475 ~~~~k~~~~y~l~~liK--~~~~~p~yl~~Il~k~~sdfi---~-~~~il~~~~k~F~~~~~~~rihei~~~i~q~kIkl 548 (993)
T COG5234 475 DVKVKQLSAYSLRQLIK--YPKELPIYLPPILDKLSSDFI---F-GYTILASIIKGFLFPFDINRIHEILSHIQQTKIKL 548 (993)
T ss_pred chhhhhhccccHHHHhc--CcccCchhhhHHhhhCchhhh---c-chhhHHHHHHHhcCccCCccHHHHHHHHHHhheee
Confidence 55677777777888877 676788888888876643211 1 111244555554311 2333444443
Q ss_pred ----HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCC-----------c----hhHHhhHHHHHHHHhc--CCHhHH
Q 002638 124 ----HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENN-----------G----TVVGLFVKPLFEAMME--QNKGVQ 182 (898)
Q Consensus 124 ----~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~-----------~----~~~~~lL~pL~eaL~e--qnk~VQ 182 (898)
-+.+-+.|..+..|--+...++.+.... + .++. - +.+++.+..++....+ ..+.+|
T Consensus 549 ~i~~~~~r~f~d~~~~f~~F~~~~~~vi~g~~-D--~~~e~~idiVs~~~~~ll~~~~~p~~~~~~~~~~v~~~~~~~ar 625 (993)
T COG5234 549 GILKGIQRIFADDIRVFRAFFSEAFSVIIGAI-D--LQEETIIDIVSDAYSVLLKFDDMPETLEVLLDYIVKCSTSKEAR 625 (993)
T ss_pred cCChHHHHHhcccchHHHHHHHHHHHHHhhhh-h--hhHhhHHHHhcchHHhhhhccccHHHHHHHHHHHHhccchhHHH
Confidence 3344477877777877777777776554 1 1100 0 1122222222222211 122233
Q ss_pred HHHHHHHHHHHHhcCCCC--chhHHHHHHHHHH---HhcCCchhhHHHHHHH-HHHHH--hcc--ccCcccHHHHHHHHH
Q 002638 183 SGAAMCMAKMVECASDPP--VVAFQKLCARICK---LLSNQNFMAKASLLPV-VGSLS--QVG--AIAPQSLEPLLQSIH 252 (898)
Q Consensus 183 egAasALAkiIE~a~d~~--~~yL~~LlPRLlk---LLks~~~kaK~alL~a-IgSLA--~vG--a~~~pyld~lLp~L~ 252 (898)
. ...+.|..+..+ .+|-.++|--+++ .|...++.+ .++. ..-++ ... .....|.+.++.+|-
T Consensus 626 i-----v~si~~~t~sli~~~~~qek~c~l~~~~yp~L~~~~~s~---~I~~~~h~~V~~t~~~S~sie~fr~~iln~l~ 697 (993)
T COG5234 626 I-----VYSILQNTPSLIISFRYQEKICKLLLDIYPQLHSIDYSA---PIANALHNIVPFTYEKSESIEEFRKEILNVLS 697 (993)
T ss_pred H-----HHHHhccCchhhhcCccHHHHHHHHHHhhhhhccccccc---chhhhhhcchhhhccccccHHHHHHHHHHHHh
Confidence 1 122223322222 1344444444333 233333321 1111 11011 111 334667778888888
Q ss_pred HhhCCCC----HHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 002638 253 ECLGSTD----WATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWK 315 (898)
Q Consensus 253 e~LsddD----W~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK 315 (898)
+++.+.. .-+|+.|+.++.+...---....+ ++-...+||++..|..+.+|++-..
T Consensus 698 nY~~d~rGDVgs~iR~~a~klm~SfL~kD~~~~~~-------y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 698 NYLTDTRGDVGSWIRKPAMKLMSSFLVKDSSGKKL-------YIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred hhccccccchhHHHHHHHHHHHHHHhhccccCCch-------hHHHHhhcccHHHHhhhhhhhhhee
Confidence 8877742 348999999998855433333333 5667788999999999888777644
No 302
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.85 E-value=6.3e+02 Score=34.84 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=83.2
Q ss_pred chhhH-HHHHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHH
Q 002638 114 TSTHV-TKIISHIVKRLKDSDS-GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAK 191 (898)
Q Consensus 114 I~PhL-pkIL~~IlrrLkDpDs-~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAk 191 (898)
+.+|+ +.|+..+.....|+.. .||.++..-+..+.-.-+ +.........+-+.++.+|.+....|-+-|+-||+.
T Consensus 1519 ~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~---Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsg 1595 (1710)
T KOG1851|consen 1519 IGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNI---FVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSG 1595 (1710)
T ss_pred cchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh---hcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 44443 3444444444455544 899997766555544331 111123455677777888877778899999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHhcCC-chhhHH-HHHHHHHHHHhccccCcccHHHHHHHHHHhhCC---CCHHHHHHH
Q 002638 192 MVECASDPPVVAFQKLCARICKLLSNQ-NFMAKA-SLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGS---TDWATRKAA 266 (898)
Q Consensus 192 iIE~a~d~~~~yL~~LlPRLlkLLks~-~~kaK~-alL~aIgSLA~vGa~~~pyld~lLp~L~e~Lsd---dDW~vRKaA 266 (898)
++.+..-.... ...-++...+... ...++. ++.-.+|+++- .||..++..+|..+..|.. +.-.++.++
T Consensus 1596 l~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~Vl---afPy~vP~wip~~L~~Ls~fa~e~~~i~~tv 1669 (1710)
T KOG1851|consen 1596 LLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVL---AFPYVVPLWIPKPLMNLSSFARESAAIKQTV 1669 (1710)
T ss_pred HHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHH---hccccchhhhHHHHHHHHhhcCCchHHHHHH
Confidence 99987544332 1111222222211 122232 23334555543 3455555566654443322 235566666
Q ss_pred HHHHHHHHHhcch
Q 002638 267 ADALSALALHSSN 279 (898)
Q Consensus 267 ~EaL~sLA~avge 279 (898)
-+++..--....+
T Consensus 1670 kktvseFrrth~D 1682 (1710)
T KOG1851|consen 1670 KKTVSEFRRTHAD 1682 (1710)
T ss_pred HHHHHHHHHHhhh
Confidence 6666544333333
No 303
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=50.05 E-value=1.1e+02 Score=28.22 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=52.9
Q ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHH
Q 002638 245 EPLLQSIHECL-GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 245 d~lLp~L~e~L-sddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
..++.++...+ ...+-.+|...++|+..|....|+.+..--..++.++.....|..+.+-..|.+.+
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 35666666664 44688999999999999999999999988999999999888888885544444333
No 304
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.65 E-value=8e+02 Score=32.67 Aligned_cols=190 Identities=14% Similarity=0.090 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhcC----CCCC---HHHHHHHHhhhcCCCCh--hhHHHHHHHHHH-HHHHhch
Q 002638 43 QKILTSLSKLADRDTHQIAIEDLEKTIQTL----SQES---LPMLLNCLYESSNDPKP--AVKKESVRLLAL-VCELHSE 112 (898)
Q Consensus 43 ~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L----~pe~---Lp~fLs~L~es~~s~k~--~vRKeAIlLLG~-IAEg~gd 112 (898)
.++..+|.......++..|++-||.+++.. +.+. +-.|.--+......... ...+..+..|.. +++....
T Consensus 47 ~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~ 126 (1041)
T KOG2020|consen 47 LQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKR 126 (1041)
T ss_pred HHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555556667888888888888642 2222 44444433332322221 123333333322 2444444
Q ss_pred hchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHH----HH---------hcCCH
Q 002638 113 LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFE----AM---------MEQNK 179 (898)
Q Consensus 113 ~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~e----aL---------~eqnk 179 (898)
.-..++|..++-+...++ ....++.-+...+-.|++.++..........-..+++.+++ .+ ..+..
T Consensus 127 eWp~~wp~~i~dl~~~s~-~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~ 205 (1041)
T KOG2020|consen 127 EWPAIWPTFIPDLAQSSK-TSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE 205 (1041)
T ss_pred HHHhhcchhhhhHHHHhh-cCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH
Confidence 445566666666666666 45567888888888888888663211111112222222222 21 12233
Q ss_pred hHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 002638 180 GVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV 236 (898)
Q Consensus 180 ~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~v 236 (898)
+-.+....|+.+++..+-.-+--.+-+..-++..++.+- .+..++.|+..++..
T Consensus 206 -~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~ln~~~--~r~~al~CL~ei~s~ 259 (1041)
T KOG2020|consen 206 -LLSATLETLLRFLEWIPLGYIFETNILELLLNKFLNAPE--LRNNALSCLTELLSR 259 (1041)
T ss_pred -HHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhccchHH--HHHHHHHHHHHHHhc
Confidence 666777778888775532111001123333344444333 456888999888754
No 305
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=48.34 E-value=3.4e+02 Score=31.61 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=89.9
Q ss_pred hhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh----HHHHHHHHHHHhcC--CchhhHHHHHHHHHHHH
Q 002638 161 TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA----FQKLCARICKLLSN--QNFMAKASLLPVVGSLS 234 (898)
Q Consensus 161 ~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~y----L~~LlPRLlkLLks--~~~kaK~alL~aIgSLA 234 (898)
..|..++.-+...+...++.|-++|.-++--++.+.... ..+ ++.+ ++.-|.. .+..=|.++|..|..+.
T Consensus 21 ~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~---ii~SL~~~~~~~~ER~QALkliR~~l 96 (371)
T PF14664_consen 21 LVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIF---IIRSLDRDNKNDVEREQALKLIRAFL 96 (371)
T ss_pred hhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchh---hHhhhcccCCChHHHHHHHHHHHHHH
Confidence 446667777776565555888888888887777643111 011 1211 1222222 22334678999999998
Q ss_pred hccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHh--hHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 002638 235 QVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVID--GATSTLTVLEACRFDKIKPVRDSMNEALQ 312 (898)
Q Consensus 235 ~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~P--y~~~~I~~LE~~RfDKvKpVRD~A~eALe 312 (898)
.+.......=..++.+|..+..+.+-..|..++++|..|+..-|+.+.- -+.-+++++....++ +-+.+..++-
T Consensus 97 ~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~----~~~~l~~~lL 172 (371)
T PF14664_consen 97 EIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFS----ISESLLDTLL 172 (371)
T ss_pred HhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHh----HHHHHHHHHH
Confidence 7631111122467788888888888899999999999999999876541 133334433322222 4456555555
Q ss_pred HHHHhh
Q 002638 313 LWKKIA 318 (898)
Q Consensus 313 lWK~La 318 (898)
.|-.-+
T Consensus 173 ~lLd~p 178 (371)
T PF14664_consen 173 YLLDSP 178 (371)
T ss_pred HHhCCc
Confidence 554333
No 306
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=48.26 E-value=5e+02 Score=30.22 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 002638 133 DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARIC 212 (898)
Q Consensus 133 Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLl 212 (898)
...+..+...+++.|..+--. ++ ...-.+++..|...|.. + .......||.-.|-++++.+..+|+.++-+|-
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~~--~~--k~~qd~iV~~l~~GL~s--~-~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs 282 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHSH--FS--KQEQDEIVRALESGLGS--K-TAKPCIHALTICCYEMPDSMKKLLPSILLKLS 282 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cC--HhHHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 357888888999999988732 11 12245677777777754 2 22335666777777777777778888888888
Q ss_pred HHhcCCchhhHHHHHHHHHHHHh
Q 002638 213 KLLSNQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 213 kLLks~~~kaK~alL~aIgSLA~ 235 (898)
++..+++.-+ ..|+.+.+++.
T Consensus 283 ~i~tt~~~Ai--~ILEFLs~L~~ 303 (356)
T PF03542_consen 283 KISTTPNMAI--HILEFLSSLSR 303 (356)
T ss_pred hhccchhhHH--HHHHHHHHHhh
Confidence 7777554332 57888888765
No 307
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=47.51 E-value=31 Score=32.09 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhh
Q 002638 256 GSTDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPV 303 (898)
Q Consensus 256 sddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpV 303 (898)
.++.|.+|.-|++.|+.|....++.......++++.|...-+|..++.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~ 63 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPL 63 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCH
Confidence 356899999999999999999985444445688888888888877653
No 308
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=47.25 E-value=4.8e+02 Score=32.04 Aligned_cols=166 Identities=19% Similarity=0.202 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcc--cccCCchhHHhhHHHHHHHHhc
Q 002638 99 SVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNG--KEENNGTVVGLFVKPLFEAMME 176 (898)
Q Consensus 99 AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~--~~e~~~~~~~~lL~pL~eaL~e 176 (898)
.-.+||.+++..-..+.. +.+..+-+..++.. ..+.-..-.|.- .+++ +- .+.+.-+...+|+..|.....+
T Consensus 67 ~AellG~lS~~rF~sVsd---RF~~eL~~~~~~~~-~~~~~~~~li~G-Mr~l-rlk~~p~e~~e~s~~Fm~~l~~~f~~ 140 (552)
T PF14222_consen 67 FAELLGVLSEIRFVSVSD---RFIAELEKLRKDSN-DAESKIELLIMG-MRYL-RLKMYPEEAFEESAEFMQSLAKFFLE 140 (552)
T ss_pred HHHHHHHHHhhhChHHHH---HHHHHHHHhcccCC-chHHHHHHHHhh-ccee-eecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 667888888876665553 33444444443321 122111111111 1111 21 1110112234566666555533
Q ss_pred --CCHhHHHHHHHHHHHHHHhc----CCCC-----chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcc--ccCccc
Q 002638 177 --QNKGVQSGAAMCMAKMVECA----SDPP-----VVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQS 243 (898)
Q Consensus 177 --qnk~VQegAasALAkiIE~a----~d~~-----~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vG--a~~~py 243 (898)
+++.++-|-|..|..++-=. .... .+.+..|.|++.+++..+.+ -..++.++.++-.++ +.|..+
T Consensus 141 ~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~kh--w~~afPL~t~lLCvS~~e~F~~~ 218 (552)
T PF14222_consen 141 AHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKH--WNVAFPLVTTLLCVSPKEFFLSN 218 (552)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcch--hhhHHHHHHHHHhcCcHHHHHHH
Confidence 46679989888888887532 1111 24578899999999986443 345677777776666 556655
Q ss_pred HH-HHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 244 LE-PLLQSIHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 244 ld-~lLp~L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
.- .++..+...|++. ..|..++++|..|.
T Consensus 219 W~~~~i~~~~~klKdk--~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 219 WLPSLIESLISKLKDK--ETRPVALECLSRLL 248 (552)
T ss_pred HHHHHHHHHHhhcCCh--hhhHHHHHHHHHHH
Confidence 55 5676667777775 88999999998754
No 309
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=47.13 E-value=6.9e+02 Score=31.48 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHH
Q 002638 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVI 282 (898)
Q Consensus 203 yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~ 282 (898)
+.+.|-..+.+.+.+.+...=..+|.++..++++...-+.-...-+..-.......--.++...+++|..++...++.+.
T Consensus 438 ~~~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 438 ISPNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred hhHHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 56677777777777666553335555555554333111111000011111111111234666777888888888777776
Q ss_pred hhHH--HHHHHHHhhhcCCChhhHHHHHHHHHHHHHhhcC
Q 002638 283 DGAT--STLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 283 Py~~--~~I~~LE~~RfDKvKpVRD~A~eALelWK~La~~ 320 (898)
..+. .++..+-.|-|.....++++ |.++.|.+-++
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qa---A~~llk~~~d~ 554 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQA---AQDLLKQAFDV 554 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHH---HHHHHHHHhcC
Confidence 6654 77888889999999978887 67777777654
No 310
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=45.87 E-value=4.6e+02 Score=29.08 Aligned_cols=67 Identities=15% Similarity=0.240 Sum_probs=39.2
Q ss_pred HhchhchhhHHHHHHHHH--------HhhcCCC--hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCC
Q 002638 109 LHSELTSTHVTKIISHIV--------KRLKDSD--SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQN 178 (898)
Q Consensus 109 g~gd~I~PhLpkIL~~Il--------rrLkDpD--s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqn 178 (898)
.+||.+...|+.|+..+. +-+.|++ ..||.+|..+++.++..-... -+.+..+++.+|....+.+
T Consensus 92 l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~-----Re~vi~~f~~ll~~~l~~~ 166 (249)
T PF06685_consen 92 LFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS-----REEVIQYFRELLNYFLERN 166 (249)
T ss_pred HHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHhccC
Confidence 355666666666666543 3355554 577888888887777665221 2345556666666644444
Q ss_pred Hh
Q 002638 179 KG 180 (898)
Q Consensus 179 k~ 180 (898)
+.
T Consensus 167 ~~ 168 (249)
T PF06685_consen 167 PS 168 (249)
T ss_pred ch
Confidence 33
No 311
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.41 E-value=5.9e+02 Score=30.24 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=94.3
Q ss_pred HhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh
Q 002638 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQ--TLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL 113 (898)
Q Consensus 36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~--~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~ 113 (898)
..+-.+-++++.+-.+..+.+-.+..+.-||.++. .+|.+.|+.++..|+...... ...+.+-.++.+++..|...
T Consensus 172 ~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~ 249 (464)
T PF11864_consen 172 DEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH 249 (464)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH
Confidence 44455566666666667767777889999999997 577778999999998765433 56667888888888776532
Q ss_pred chhhHHHHHHHHHHhhcCCC------hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSD------SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM 187 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpD------s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas 187 (898)
.++.++..-|.+++ ..+-.-|...++.+.-...+.+.....-....+++.|..+|...+..|-.....
T Consensus 250 ------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~ 323 (464)
T PF11864_consen 250 ------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILL 323 (464)
T ss_pred ------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHH
Confidence 22333333343222 233234455555554444222111111112238899999998777777777778
Q ss_pred HHHHHHH
Q 002638 188 CMAKMVE 194 (898)
Q Consensus 188 ALAkiIE 194 (898)
++..+++
T Consensus 324 ~i~~ll~ 330 (464)
T PF11864_consen 324 LINRLLD 330 (464)
T ss_pred HHHHHHh
Confidence 8888883
No 312
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=45.11 E-value=3.9e+02 Score=36.93 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=116.9
Q ss_pred hhhHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHH-HHH
Q 002638 115 STHVTKIISHIVKRLKDSD---SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAM-CMA 190 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpD---s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAas-ALA 190 (898)
.|-+..|..+|..-|+... ...-.||...++.|+.+-.. ...|. +-.++.+.++..---.+.|. -+.
T Consensus 1392 ~~lls~v~~~ItPylk~~sa~nap~~~a~~~LLasLSgy~y~------rkaWr---Ke~~eLF~D~~fFqmd~s~l~~W~ 1462 (1749)
T KOG3613|consen 1392 VPLLSIVNYNITPYLKNHSARNAPLFRAGLQLLASLSGYQYT------RKAWR---KEFLELFLDNSFFQMDLSCLRHWS 1462 (1749)
T ss_pred hhHHHHHHHhhhHHhccccccccchHHHHHHHHHHHhcCchh------HHHHH---HHHHHHhcCcchheeeHHHHHHHH
Confidence 3444444555555554432 22344555555555544321 12233 22344444444433345555 568
Q ss_pred HHHHhcCCCCchhHHHHHHHH-------HHHhcCC--chhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhC-CC
Q 002638 191 KMVECASDPPVVAFQKLCARI-------CKLLSNQ--NFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLG-ST 258 (898)
Q Consensus 191 kiIE~a~d~~~~yL~~LlPRL-------lkLLks~--~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~Ls-dd 258 (898)
.|++..-..+...++.||-|+ +.++.+. -+..|+.+|-=|.-++-.+ +.+..|+..+...|.+.|. +.
T Consensus 1463 ~Iid~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~ 1542 (1749)
T KOG3613|consen 1463 SIIDHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQ 1542 (1749)
T ss_pred HHHHHHHhCCchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCC
Confidence 899875444445788888883 3334332 3556777776666654333 6788899999999999888 78
Q ss_pred CHHHHHHHHHHHHHHHHhcc-hHHHhh----HHHHHHHHHhhhcCCC-----------hh--hHHHHHHHHHHHHHhhcC
Q 002638 259 DWATRKAAADALSALALHSS-NLVIDG----ATSTLTVLEACRFDKI-----------KP--VRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 259 DW~vRKaA~EaL~sLA~avg-e~L~Py----~~~~I~~LE~~RfDKv-----------Kp--VRD~A~eALelWK~La~~ 320 (898)
+..+|+++.=++-.|+.... +.|.++ ....+.+++..-+|-+ -+ -+-.-++||.+..-+.-.
T Consensus 1543 ~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv~vf~q~eq~l~~~~~~~~s~~~~~qtw~~l~L~ACKlLDll~~L 1622 (1749)
T KOG3613|consen 1543 SPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELVQVFLQLEQDLQVGEANGQSTAYSSQTWLMLYLEACKLLDLLLLL 1622 (1749)
T ss_pred CchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHHHHHHHHHhhhccccccccccccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998877776 777766 3444555554444422 11 123366777777666533
No 313
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=44.90 E-value=5.4e+02 Score=29.63 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHH--HHHHHHHHHhcccccCCchhHHhhHHHHHHH
Q 002638 96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRD--SIGSLSKLYLNGKEENNGTVVGLFVKPLFEA 173 (898)
Q Consensus 96 RKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~--tLG~LA~~lik~~~e~~~~~~~~lL~pL~ea 173 (898)
+.+....|-.+-.+++ .+.+.|..++..=+.+..|+...+|.-+.+ ++..+.... + ..++..+|.|++..
T Consensus 38 ~~~~a~~LV~~f~~~~-~~~~ll~~li~~Ev~~~~~~~tlfR~NSlaTK~m~~y~k~~---G----~~YL~~~L~p~I~~ 109 (333)
T cd05135 38 RQDVAMKLVKIFLGQG-LAVPFLDYLNTREVQRTTDPNTLFRSNSLASKSMEQFMKVV---G----MPHLHEPLLPEISK 109 (333)
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhCCCHhHHhhcCcHHHHHHHHHHHHH---h----HHHHHHHHHHHHHH
Confidence 3444444444444444 556777777777777788888888876655 466666553 2 36788888888887
Q ss_pred H
Q 002638 174 M 174 (898)
Q Consensus 174 L 174 (898)
+
T Consensus 110 I 110 (333)
T cd05135 110 P 110 (333)
T ss_pred H
Confidence 7
No 314
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=44.83 E-value=2.3e+02 Score=28.86 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcC-------CCChhhHHH-HHHHHHHHHHHhchhchhhHHHHHHHHHHh
Q 002638 57 THQIAIEDLEKTIQTLSQESLPMLLNCLYESSN-------DPKPAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKR 128 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~-------s~k~~vRKe-AIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr 128 (898)
....+.+.+-.++-.|+...+-|++..|.+=.. ......|.. -.+++..+++.....+.||..+++..++..
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888887789888888876532 222333333 445556666666667899999999998888
Q ss_pred hcCCC
Q 002638 129 LKDSD 133 (898)
Q Consensus 129 LkDpD 133 (898)
|+.-.
T Consensus 117 L~~~~ 121 (153)
T PF08146_consen 117 LKQFN 121 (153)
T ss_pred HHHhh
Confidence 86653
No 315
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=44.50 E-value=1.8e+02 Score=25.00 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch
Q 002638 62 IEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE 112 (898)
Q Consensus 62 a~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd 112 (898)
-+.|..+...= | .+..+|-.|... .+.+..+|..|+..|.+.+..++.
T Consensus 2 E~~L~~~~~~~-p-~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~ 49 (77)
T PF03810_consen 2 EQQLKQFQKQN-P-GFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWS 49 (77)
T ss_dssp HHHHHHHHHSC-T-CHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHH-h-hHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCc
Confidence 35567776621 4 444444444422 456799999999999999999977
No 316
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=44.40 E-value=6.6e+02 Score=30.46 Aligned_cols=185 Identities=16% Similarity=0.150 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHhc------CCCCCHHHHHHHHhhhcCCCC-hhhHHHHHHHHHHHHHH----
Q 002638 41 MKQKILTSLSKLADRDTHQIAIEDLEKTIQT------LSQESLPMLLNCLYESSNDPK-PAVKKESVRLLALVCEL---- 109 (898)
Q Consensus 41 LK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~------L~pe~Lp~fLs~L~es~~s~k-~~vRKeAIlLLG~IAEg---- 109 (898)
|--+++++|.+.-..|.+.+.++-|...+++ |-. .+++.++++-....+ -..+..++-+|..+|+.
T Consensus 224 l~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~---~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vll 300 (604)
T KOG4500|consen 224 LVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQ---NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLL 300 (604)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhh---cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhh
Confidence 3445666777776677777777777777753 111 224444444333322 23455688888888875
Q ss_pred -hchhchhhH---HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh-----cCCHh
Q 002638 110 -HSELTSTHV---TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM-----EQNKG 180 (898)
Q Consensus 110 -~gd~I~PhL---pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~-----eqnk~ 180 (898)
.|+..-.|| |+++.+++.-+...|+...-+.+-+||.+++.=..+. .-.-..++.-|+++|. +.|..
T Consensus 301 ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci----~~v~~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 301 LTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICI----QLVQKDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred hcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHH----HHHHHHHHHHHHHHHHHhcCCCccch
Confidence 222221222 4578888889999999999999999999987532210 0112457788888883 34888
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-hhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 002638 181 VQSGAAMCMAKMVECASDPPV-VAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLS 234 (898)
Q Consensus 181 VQegAasALAkiIE~a~d~~~-~yL~-~LlPRLlkLLks~~~kaK~alL~aIgSLA 234 (898)
+|-++++||-.+.= |..-. .+++ -+..-+++.|+.-...+.--+|..+.-+.
T Consensus 377 ~qhA~lsALRnl~I--Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 377 RQHACLSALRNLMI--PVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred hHHHHHHHHHhccc--cCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999877652 11110 1222 13444455555433333334555555544
No 317
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=43.98 E-value=3.2e+02 Score=31.26 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred hhchhhHHHHHHHHHHhhcCCChHHHHH--HHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 112 ELTSTHVTKIISHIVKRLKDSDSGMKEA--CRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 112 d~I~PhLpkIL~~IlrrLkDpDs~VR~A--c~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
..+.|+|..++..=+.+..|+....|.- |-.++..++... | ..++...|.|+++.+-
T Consensus 49 ~~~~~~l~~l~~~Ev~~~~~~~tLFRgNSlaTK~m~~y~k~~---G----~~YL~~tL~pvI~~i~ 107 (310)
T cd05134 49 GKIVPFISAIASAEVNRTQDPNTIFRGNSLTSKCIDETMKLA---G----MHYLQVTLKPIIDEIC 107 (310)
T ss_pred CcHHHHHHHHHHHHHHhCCCcchhhhcCcHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHH
Confidence 3457888888888888899998888864 444577766666 2 3678889999999884
No 318
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=43.37 E-value=33 Score=32.15 Aligned_cols=57 Identities=28% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhcchHHHhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHhh
Q 002638 261 ATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 261 ~vRKaA~EaL~sLA~avge~L~Py~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~La 318 (898)
..|-+++-.|+++..+.+-.+-|+++.+|..|-.+..| ..+|+..+..+|.-|+.--
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 35678888999999999988889999999998877776 7779999998887666543
No 319
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.33 E-value=99 Score=31.18 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hh-HHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHh
Q 002638 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VA-FQKLCARICKLLSN-QNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~y-L~~LlPRLlkLLks-~~~kaK~alL~aIgSLA~ 235 (898)
-...++.|-..|...|++||.-|..-|..++++++.... ++ -...+..|.+++.. .+..+|.-++.+|..-+.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 455777777888888999999999999999999876432 22 12456667777777 577788888888888763
No 320
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.50 E-value=1.3e+02 Score=40.30 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=71.5
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhcc--ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHH
Q 002638 211 ICKLLSNQNFMAKASLLPVVGSLSQVG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATST 288 (898)
Q Consensus 211 LlkLLks~~~kaK~alL~aIgSLA~vG--a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~ 288 (898)
+++-|.-.+...|.-+|..++.++.-. ......+........++..|.+..+|-+.-+.+..+...++..++||+..+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 333333446666766777788776321 111111222222234567889999999999999999999999999999999
Q ss_pred HHHHHhhhcCCChhhHHHHHHHH
Q 002638 289 LTVLEACRFDKIKPVRDSMNEAL 311 (898)
Q Consensus 289 I~~LE~~RfDKvKpVRD~A~eAL 311 (898)
|......++|-.-+|-.+|..++
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf 148 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASF 148 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHH
Confidence 99999999998887766654444
No 321
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.30 E-value=9.8e+02 Score=31.86 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhchhchhhHHHHHH-HHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638 96 KKESVRLLALVCELHSELTSTHVTKIIS-HIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 96 RKeAIlLLG~IAEg~gd~I~PhLpkIL~-~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL 174 (898)
|=+.++.....-..+.+-+..++..|.- ..+-|.+|-++.||..|...||..+..+..- + .-..||+=+==.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~-F-----l~dsYLKYiGWtL 335 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEI-F-----LSDSYLKYIGWTL 335 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHH-H-----hcchHHHHhccee
Confidence 4556666655555566666677777665 4567899999999999999999887777211 0 0112333333344
Q ss_pred hcCCHhHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhccccCcccH-HHHHHH
Q 002638 175 MEQNKGVQSGAAMCMAKMVECASDPP--VVAFQKLCARICKLL-SNQNFMAKASLLPVVGSLSQVGAIAPQSL-EPLLQS 250 (898)
Q Consensus 175 ~eqnk~VQegAasALAkiIE~a~d~~--~~yL~~LlPRLlkLL-ks~~~kaK~alL~aIgSLA~vGa~~~pyl-d~lLp~ 250 (898)
.+.+-.|--....+|.++.|...+.. ..++.+-=.|++.+. ..-+.-++...|....... ...++ +.-+-.
T Consensus 336 sDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~-----~~g~L~d~di~~ 410 (1048)
T KOG2011|consen 336 SDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS-----SSGLLSDKDILI 410 (1048)
T ss_pred ecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh-----cccccChhHHHH
Confidence 68899999999999999999732221 234555566667666 2223334443222222211 11111 123334
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 251 IHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 251 L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
+..++-+.+..++++|.+.|..-.
T Consensus 411 Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 411 VYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHhccCcchHHHHHHHHHHHh
Confidence 556777888889999988887643
No 322
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=42.03 E-value=1.6e+02 Score=37.59 Aligned_cols=167 Identities=15% Similarity=0.193 Sum_probs=104.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHh----hcCCChHHHHHHHHHHHHHHHHHh
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKR----LKDSDSGMKEACRDSIGSLSKLYL 152 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~Ilrr----LkDpDs~VR~Ac~~tLG~LA~~li 152 (898)
+--++.-|+...++..+..|+-+-+++=++. -...|+||=.++..| |......-=.++.+++-.|..+|-
T Consensus 15 yKkLV~~iFPr~~e~gpn~s~m~kL~~YAas------np~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~ 88 (819)
T KOG1877|consen 15 YKKLVDNIFPRSPEDGPNKSKMEKLTFYAAS------NPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACK 88 (819)
T ss_pred HHHHHHHhCCCCCCCCcccccHHHHHHHHhh------ChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHh
Confidence 3344555555556666767776665552221 123455655555555 444445555678888888888883
Q ss_pred cccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-h-hHHHHHHHHHHHhcCC---c--hhhHHH
Q 002638 153 NGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-V-AFQKLCARICKLLSNQ---N--FMAKAS 225 (898)
Q Consensus 153 k~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~-yL~~LlPRLlkLLks~---~--~kaK~a 225 (898)
.. ..-+...||.-+..+|...+.+.|+.+|.|+.+|+....+.+. . -+++.+++++++-... + -.++.+
T Consensus 89 eq----~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~a 164 (819)
T KOG1877|consen 89 EQ----INLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAA 164 (819)
T ss_pred hh----hHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHh
Confidence 22 2344566777777778777999999999999999976555432 1 2678999999988763 1 224556
Q ss_pred HHHHHHHHHh--cc-----ccC-cccHHHHHHHHHH
Q 002638 226 LLPVVGSLSQ--VG-----AIA-PQSLEPLLQSIHE 253 (898)
Q Consensus 226 lL~aIgSLA~--vG-----a~~-~pyld~lLp~L~e 253 (898)
=+.++.+++. +. .+. ..+++.++|.+.-
T Consensus 165 gl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~ 200 (819)
T KOG1877|consen 165 GLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLF 200 (819)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHH
Confidence 6666666652 11 111 3357778887653
No 323
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.37 E-value=32 Score=27.62 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002638 245 EPLLQSIHECLGSTDWATRKAAADAL 270 (898)
Q Consensus 245 d~lLp~L~e~LsddDW~vRKaA~EaL 270 (898)
+.++..+..+|.|++..+|++|.++|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 37778888999999999999999874
No 324
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.18 E-value=23 Score=36.49 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=43.1
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 88 ~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
..+.+.-+|+.++.++-..+. ..+++.++..+...+.|++..||.+.+|+|..++...
T Consensus 129 ~~s~~~w~rR~~~v~~~~~~~------~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVMLLRYIR------KEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHCSSHHHHHHHHHCTTTHGG------GCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HhCCcHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 456777788887766522222 2778899999999999999999999999988776554
No 325
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.62 E-value=5.5e+02 Score=28.48 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHhhhcC-------CCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcC
Q 002638 60 IAIEDLEKTIQTLSQE-SLPMLLNCLYESSN-------DPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKD 131 (898)
Q Consensus 60 ~Aa~eLD~Ia~~L~pe-~Lp~fLs~L~es~~-------s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkD 131 (898)
.--+.|+..+. .++ .+|.++..|.+... ++.+..--.|+.+|+..-+ .+-++.|++.++-
T Consensus 17 ~P~~al~~A~~--~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re----------~~A~~~li~l~~~ 84 (249)
T PF06685_consen 17 FPREALEAAIE--QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFRE----------ERALPPLIRLFSQ 84 (249)
T ss_pred CcHHHHHHHHH--CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhh----------hhhHHHHHHHHcC
Confidence 33455565555 333 36666666665432 2223223345555544422 1224445666655
Q ss_pred CChHHHHHHHH----HHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--CHhHHHHHHHHHHHHHHhcCC---CCch
Q 002638 132 SDSGMKEACRD----SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKMVECASD---PPVV 202 (898)
Q Consensus 132 pDs~VR~Ac~~----tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--nk~VQegAasALAkiIE~a~d---~~~~ 202 (898)
++--+-....+ .++++...+.+. =+.+|.+.+.+. +.-|..+|+.||..+...-+. ....
T Consensus 85 ~~~~~~~l~GD~~tE~l~~ilasv~~G-----------~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 85 DDDFLEDLFGDFITEDLPRILASVGDG-----------DIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred CcchHHHHHcchhHhHHHHHHHHHhCC-----------CHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 55444444444 333333333111 234556666443 677999999999999986432 3334
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhC
Q 002638 203 AFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLG 256 (898)
Q Consensus 203 yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~Ls 256 (898)
|+..++...+ =+++.+ +.++++. ..+--|...++|.+.+...
T Consensus 154 ~f~~ll~~~l--~~~~~~--------~~~~Lv~--~~~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 154 YFRELLNYFL--ERNPSF--------LWGSLVA--DICDLYPEELLPEIRKAFE 195 (249)
T ss_pred HHHHHHHHHh--ccCchH--------HHHHHHH--HHHhcCHHHhHHHHHHHHH
Confidence 5555443322 122233 3444432 2333466677777766543
No 326
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=40.54 E-value=4.8e+02 Score=27.76 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
-..-++.+.+++.+.+.++....|++..++..+-+.-.+++...|..+-.++|...+.+
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~am 72 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAM 72 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHC
Confidence 44567889999999999999899999999999999888888899999999999999988
No 327
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=40.28 E-value=86 Score=31.87 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=46.2
Q ss_pred cCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 88 SNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 88 ~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
..+.+.-.|+.++.++...... ..++..++..+-..+.|.+..||.+.+|+|..++...
T Consensus 114 ~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~ 172 (197)
T cd06561 114 AKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKD 172 (197)
T ss_pred HhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 3566677788776666443332 4568888999999999999999999999999888875
No 328
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.97 E-value=1.3e+02 Score=34.56 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHH
Q 002638 167 VKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEP 246 (898)
Q Consensus 167 L~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~ 246 (898)
+.-|++.|...+|.|+.+|..-|-.+.-.-......|-..+++-+.++++.... ++.++-.+++- ++....-...+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnl-sq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNL-SQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHH-HhhHHHHHHHHHH
Confidence 446777888999999999887777776542222334555688888888887654 45443333333 2211111223344
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 247 LLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 247 lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
++..|+..+.++.|.+=+..|-.|..++.--+
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~ 114 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD 114 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccCch
Confidence 77788889999999998888888888776544
No 329
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=38.84 E-value=3e+02 Score=27.73 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhH--HHHHHHHHhhhcC-CChhhHHHHHHHHHHHHH
Q 002638 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGA--TSTLTVLEACRFD-KIKPVRDSMNEALQLWKK 316 (898)
Q Consensus 243 yld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~--~~~I~~LE~~RfD-KvKpVRD~A~eALelWK~ 316 (898)
.....+..|...|.+.+..+-..|+..|-+++...|..|...+ ..+++.|...-.+ ....|++-+++.++.|..
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4457777788888888888888899999999999997776443 3334444333333 667799999999999974
No 330
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=37.89 E-value=5.7e+02 Score=27.85 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=14.1
Q ss_pred cCcccHHHHHHHHHHhhCC
Q 002638 239 IAPQSLEPLLQSIHECLGS 257 (898)
Q Consensus 239 ~~~pyld~lLp~L~e~Lsd 257 (898)
...|||+|++..+..++.+
T Consensus 178 ~hsphFDWVvahigs~FP~ 196 (213)
T PF14837_consen 178 QHSPHFDWVVAHIGSCFPG 196 (213)
T ss_pred ccCCchhhhHHHHHhhCcH
Confidence 4568888888887777655
No 331
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=37.83 E-value=2.4e+02 Score=28.30 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhh------HHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 002638 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDG------ATSTLTVLEACRFDKIKPVRDSMNEALQLWKK 316 (898)
Q Consensus 243 yld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py------~~~~I~~LE~~RfDKvKpVRD~A~eALelWK~ 316 (898)
.....+..|...|.+.+..+-..|+..|-.+....|..|... ++.+++.+.. .....||+-+++.++.|..
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHH
Confidence 355777788888888888888889999999999999766644 3444444433 4556799999999999985
Q ss_pred h
Q 002638 317 I 317 (898)
Q Consensus 317 L 317 (898)
-
T Consensus 115 ~ 115 (142)
T cd03569 115 A 115 (142)
T ss_pred H
Confidence 3
No 332
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=37.78 E-value=4.1e+02 Score=33.38 Aligned_cols=96 Identities=10% Similarity=0.124 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHHHHHHHH
Q 002638 115 STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAasALAkiI 193 (898)
.||=..++..|-..|..+. -|-.+...++.|++.= ..--..-.-..+++-|+.+| .|.+..+-..|..||..++
T Consensus 65 ~P~~K~~~~~l~~~~~~~~--~Rl~~L~Ll~~~v~~q---p~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 65 EPHDKHLFDKLNDYFVKPS--YRLQALTLLGHFVRSQ---PPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred CccHHHHHHHHHHHHcCch--hHHHHHHHHHHHHhcC---CchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 4555556666666676554 5666666666555432 10000000123666777777 5789999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHHHh
Q 002638 194 ECASDPPVVAFQKLCARICKLL 215 (898)
Q Consensus 194 E~a~d~~~~yL~~LlPRLlkLL 215 (898)
=-++....+||+.|+.-+..++
T Consensus 140 P~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 140 PHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccccchhhHHHHHHHHHHHHHH
Confidence 8777777788888888888777
No 333
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=37.65 E-value=2.2e+02 Score=34.12 Aligned_cols=137 Identities=10% Similarity=0.088 Sum_probs=79.0
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHHHHHH---hchhc-hhhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHHHHhcc
Q 002638 80 LLNCLYESSNDPKPAVKKESVRLLALVCEL---HSELT-STHVTKIISHIVK-RLKDSDSGMKEACRDSIGSLSKLYLNG 154 (898)
Q Consensus 80 fLs~L~es~~s~k~~vRKeAIlLLG~IAEg---~gd~I-~PhLpkIL~~Ilr-rLkDpDs~VR~Ac~~tLG~LA~~lik~ 154 (898)
||..+.+-+.+.+...--.+.+++|+.|+. |...+ ..++.+++..+-+ .--|-+-.+.+||+.++..|+-=....
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 555555555666777778899999999986 33444 4578999998888 566777888999999988776333211
Q ss_pred cccCCchhHHh-hHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchh--HHHHHHHHHHHhcCCchh
Q 002638 155 KEENNGTVVGL-FVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVA--FQKLCARICKLLSNQNFM 221 (898)
Q Consensus 155 ~~e~~~~~~~~-lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~y--L~~LlPRLlkLLks~~~k 221 (898)
..+.+. +...++-.+.-..|.||---...|..+++..+..-.+. -++++.||..--++++|-
T Consensus 396 -----a~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 396 -----AHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred -----hhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 011111 22223333333455555555555555555432211111 124555555555555543
No 334
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=37.50 E-value=4.3e+02 Score=26.39 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=40.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHH
Q 002638 44 KILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIIS 123 (898)
Q Consensus 44 rll~~L~KLsDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~ 123 (898)
++...|+|++. +.....+.+|..+... .++....++..|.+..... +..-.....+++.+....+ .+-..++.
T Consensus 3 ~v~~~lnkLs~-~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~----~f~~~ll~ 75 (200)
T smart00543 3 KVKGLINKLSP-SNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNP----DFGSLLLE 75 (200)
T ss_pred HHHHHHhhCCH-HHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 56778899984 4555556666666542 2334666677776554322 2223333334444443333 33344444
Q ss_pred HHHHhhc
Q 002638 124 HIVKRLK 130 (898)
Q Consensus 124 ~IlrrLk 130 (898)
.+...+.
T Consensus 76 ~~~~~f~ 82 (200)
T smart00543 76 RLQEEFE 82 (200)
T ss_pred HHHHHHH
Confidence 4444443
No 335
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=36.92 E-value=8.2e+02 Score=33.97 Aligned_cols=50 Identities=24% Similarity=0.207 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccccCcccHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc
Q 002638 226 LLPVVGSLSQVGAIAPQSLE-----PLLQSIHECLGSTDWATRKAAADALSALALHSS 278 (898)
Q Consensus 226 lL~aIgSLA~vGa~~~pyld-----~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg 278 (898)
+|.-+.+++.+ ..+|-. .+|+.|++.|++....+=-.+|-+|-.|..--+
T Consensus 508 ILRNVSS~IAt---~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p 562 (2195)
T KOG2122|consen 508 ILRNVSSLIAT---CEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSP 562 (2195)
T ss_pred HHHHHHhHhhc---cchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCH
Confidence 44556666543 333422 467778888888777776677777777766555
No 336
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=36.82 E-value=3e+02 Score=28.59 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcC--CHhHHHHHHHHHHHHHHhcCCCCchhHHH-HHHHHHHH
Q 002638 138 EACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGAAMCMAKMVECASDPPVVAFQK-LCARICKL 214 (898)
Q Consensus 138 ~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eq--nk~VQegAasALAkiIE~a~d~~~~yL~~-LlPRLlkL 214 (898)
++-+.++.++..-+ +++.-.=+..-+.|++-+...+..+ +..++..|..=|..++.+.+..-...-++ =+++|+..
T Consensus 32 ~~La~~L~af~eLM-eHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELM-EHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHH-hcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHH
Confidence 34444555555544 3321001122345666666666433 67788888888888887653311111111 36788888
Q ss_pred hcCCchhhHHHHHHHHHHHH
Q 002638 215 LSNQNFMAKASLLPVVGSLS 234 (898)
Q Consensus 215 Lks~~~kaK~alL~aIgSLA 234 (898)
|...+..++..++.+|+++.
T Consensus 111 Lq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 88888888888888888885
No 337
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=36.72 E-value=1.4e+02 Score=29.88 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=53.4
Q ss_pred HHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hhH-HHHHHHHHHHhc-CCchhhHHHHHHHHHHHHh
Q 002638 163 VGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VAF-QKLCARICKLLS-NQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 163 ~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~yL-~~LlPRLlkLLk-s~~~kaK~alL~aIgSLA~ 235 (898)
-...++.|-..|...|+++|.-|..-|..++.+++.... ++- ..++..|.+++. ..+.++|.-++.+|.+-+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 345677777777788999999999999999999865332 232 246666777776 4567788888888887763
No 338
>PF14961 BROMI: Broad-minded protein
Probab=36.50 E-value=5.2e+02 Score=34.68 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=48.5
Q ss_pred HHHHHhhhcCCCCh-hhHHHHHHHHHHHHHHhchhc--hhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 002638 80 LLNCLYESSNDPKP-AVKKESVRLLALVCELHSELT--STHVTKIISHIVKRLKDSDSGMKEACRDSIGSLS 148 (898)
Q Consensus 80 fLs~L~es~~s~k~-~vRKeAIlLLG~IAEg~gd~I--~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA 148 (898)
-+.+|.+.++..+| .+|.+|+..| +......+ .++++-+...+...|.|||+.+.+.+....+.+.
T Consensus 162 ~lq~i~d~ld~~~P~evR~eAlq~L---c~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~f 230 (1296)
T PF14961_consen 162 QLQLIADKLDPGQPKEVRLEALQIL---CSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMF 230 (1296)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHH---hcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 35777777654444 4888887765 55555443 6799999999999999999999998887655443
No 339
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.13 E-value=2.5e+02 Score=37.94 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=82.5
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchh------hHHHHHHHHHHh-h---cCC-C----hHHHHHHHHH
Q 002638 79 MLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST------HVTKIISHIVKR-L---KDS-D----SGMKEACRDS 143 (898)
Q Consensus 79 ~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P------hLpkIL~~Ilrr-L---kDp-D----s~VR~Ac~~t 143 (898)
.++.+|.+.-.+..+.||..|+..|=.+...|+..+.+ .+..|+|.+-.. . .+- . -.--+.||-+
T Consensus 997 ~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lt 1076 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLT 1076 (1610)
T ss_pred HHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhh
Confidence 45778887778888999999999999999999988776 344444444310 0 000 0 1224678888
Q ss_pred HHHHHHHHhcc-----cccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHh
Q 002638 144 IGSLSKLYLNG-----KEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 144 LG~LA~~lik~-----~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~ 195 (898)
|+-++..+-.. ...+-.+.|..+|.-|-.++.+.++++-.+|+.|+..++-.
T Consensus 1077 isgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1077 ISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 88888776331 12222366888887777777888999999999999998865
No 340
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.58 E-value=59 Score=31.13 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhhccccchhhhHhHhhhhhHHHHHHH
Q 002638 520 LAIQRQLMQLERQQAHL-----MNMLQDFMGGSHDSMVTLENRVRGLERVVEDM 568 (898)
Q Consensus 520 ~~Ir~QL~qiE~qQs~l-----~~lLQ~Fmg~s~~~m~~Le~RV~gLE~~~dei 568 (898)
....+.|.+||.+-.|| +.-||.-|+.----|..|+.++.|+++.++=+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33499999999999998 88899999998888999999999888877643
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=35.45 E-value=62 Score=23.95 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhc-CCc
Q 002638 809 EVLHAIGQFLLEQNLFDICLSWIQQLVELVLEN-GPH 844 (898)
Q Consensus 809 e~l~~i~~~l~~~~~~d~~~~w~qq~~~l~~~~-g~~ 844 (898)
..++.++.++..+.=|+-++.|.++++++-..- |+|
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~ 39 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD 39 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence 467889999999999999999999999987665 554
No 342
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=35.23 E-value=1e+03 Score=30.16 Aligned_cols=201 Identities=10% Similarity=0.076 Sum_probs=108.1
Q ss_pred hhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc----CCCCC---HHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 002638 32 LSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT----LSQES---LPMLLNCLYESSNDPKPAVKKESVRLLA 104 (898)
Q Consensus 32 ~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~----L~pe~---Lp~fLs~L~es~~s~k~~vRKeAIlLLG 104 (898)
+.+.++.++-=+++-++|++..-.++.=+|+.-||+++.. ||.+. +.+|+-.+..... ++-.+|+.--..|-
T Consensus 38 LtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkllp~~~r~GiRnyvv~~vI~~s-~dd~v~~~qk~~ln 116 (1053)
T COG5101 38 LTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLVIEKS-QDDKVRDKQKYVLN 116 (1053)
T ss_pred HHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Confidence 4455566666678888999998888999999999999975 34332 7777666654332 22333433222221
Q ss_pred ----HHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccC------------CchhHHhhHH
Q 002638 105 ----LVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEEN------------NGTVVGLFVK 168 (898)
Q Consensus 105 ----~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~------------~~~~~~~lL~ 168 (898)
++++...+.-.-.+|..+|-++..-+ ..-.|-.--..++..|++.+++=..+. -..-+++++.
T Consensus 117 kldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~ 195 (1053)
T COG5101 117 KLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFG 195 (1053)
T ss_pred HhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22333322222234444444444332 122232233334555555444310000 0011555555
Q ss_pred HHHHHH-hcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcc
Q 002638 169 PLFEAM-MEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLS-NQNFMAKASLLPVVGSLSQVG 237 (898)
Q Consensus 169 pL~eaL-~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLk-s~~~kaK~alL~aIgSLA~vG 237 (898)
-....| -.+++..-+|-...|..+|+-++..-. |.-.++.-+..-+. .|++ |.+.|.|+.-++..|
T Consensus 196 lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s~pd~--r~~tl~CLtEi~~L~ 263 (1053)
T COG5101 196 LCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNSMPDT--RVATLSCLTEIVDLG 263 (1053)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhccCCch--hHHHHHHHHHHHhhc
Confidence 555555 345778888888888899987643211 22334444444443 3444 568899988887655
No 343
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=34.69 E-value=1e+03 Score=29.93 Aligned_cols=69 Identities=10% Similarity=-0.053 Sum_probs=45.4
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 002638 81 LNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 81 Ls~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~l 151 (898)
.+++.....+-++..|-.|++.|+.-+...++.+..-+ .+.+.=..|.|....||.....++--|+.+.
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~ 345 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRI 345 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcC
Confidence 34444445677788888888888877666655543222 3445556788888888888777666665555
No 344
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=33.66 E-value=59 Score=32.78 Aligned_cols=55 Identities=25% Similarity=0.231 Sum_probs=35.2
Q ss_pred chhhHHHHHHHHHHHHh--cc-ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 219 NFMAKASLLPVVGSLSQ--VG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 219 ~~kaK~alL~aIgSLA~--vG-a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
.......++.|+.++.. .| ..+. .-..++..|..+|.+.+..+|+.|+|.|+.|.
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~-~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVL-SHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHH-CSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHH-cCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 33444567777777753 44 2111 12234667778888999999999999999875
No 345
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=33.36 E-value=1.1e+02 Score=31.41 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=74.9
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHH-HHHHHHHHHHHhchhchhhHHHHHHHHHHhhcC
Q 002638 53 ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKE-SVRLLALVCELHSELTSTHVTKIISHIVKRLKD 131 (898)
Q Consensus 53 sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKe-AIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkD 131 (898)
.-++.+-.|+.-|+.....++++.+ .++..+.+.. .+|.+--. |..+++.+...+ +.+.+.+.+=+.+
T Consensus 63 ~~~E~~~la~~il~~~~~~~~~~~~-~~~~~~~~~~--~~W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s 131 (213)
T PF08713_consen 63 GYREERYLALLILDKRRKKLTEEDL-ELLEKWLPDI--DNWATCDSLCSKLLGPLLKKH--------PEALELLEKWAKS 131 (213)
T ss_dssp SCHHHHHHHHHHHHHCGGG--HHHH-HHHHHCCCCC--CCHHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhHHHhhhhhHHHH-HHHHHHhccC--CcchhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhC
Confidence 5566666676666655543333212 2222222222 34544333 355555554433 5567788888999
Q ss_pred CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHH
Q 002638 132 SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQ 205 (898)
Q Consensus 132 pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~ 205 (898)
.++-+|.+++.++. .++.+ ..+..++..+-..+.+....||.|..-+|..+....++...+||.
T Consensus 132 ~~~w~rR~~~v~~~---~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~ 195 (213)
T PF08713_consen 132 DNEWVRRAAIVMLL---RYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQ 195 (213)
T ss_dssp SSHHHHHHHHHCTT---THGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred CcHHHHHHHHHHHH---HHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999876543 33311 224555555555567889999999999998877543333333333
No 346
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=33.32 E-value=9.1e+02 Score=28.88 Aligned_cols=218 Identities=15% Similarity=0.119 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhhhc---------CCCChhhHHHHHHHHHHHHHHh-chhc-hhhHHHH
Q 002638 56 DTHQIAIEDLEKTIQTLSQES---LPMLLNCLYESS---------NDPKPAVKKESVRLLALVCELH-SELT-STHVTKI 121 (898)
Q Consensus 56 DT~k~Aa~eLD~Ia~~L~pe~---Lp~fLs~L~es~---------~s~k~~vRKeAIlLLG~IAEg~-gd~I-~PhLpkI 121 (898)
..|++|...|-.+.+. +. +...|..|+... .--+-.+|+-++.-|..=.--. ++.+ .|.=..|
T Consensus 76 ~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~i 152 (460)
T KOG2213|consen 76 GIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHI 152 (460)
T ss_pred hhHHHHHhccchhccC---chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHH
Confidence 3677777777777652 22 333344443321 0113445554444332211111 1111 2223345
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc------CCHhHHHHHHHHHHHHHHh
Q 002638 122 ISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME------QNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 122 L~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e------qnk~VQegAasALAkiIE~ 195 (898)
+.-|.+.|.|-+-.==.++.+.|+.+...-.+.+ .+.+..+. ..++.+.+ .+..+-.-=.+||...+=.
T Consensus 153 v~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~----~a~lqeLa-~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPf 227 (460)
T KOG2213|consen 153 VDEIKKALEDVTGEEFTLFMDILASLKSLQTKAG----EARLQELA-EEQEGLADLDAFNVSDADYVDRFISCLLMAVPF 227 (460)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCC----HHHHHHHH-HHHhhhhccCcccCCChHHHHHHHHHHHHhhhh
Confidence 6666666777666555566666666555443221 12222222 11222211 1333444444444444432
Q ss_pred -cCCCC-chhHHHHHHHHHHH-hcCCchhhHHHHHHHHHHHHhcc-ccCcccHHHHHHHHHHhhCC------CCHHHHHH
Q 002638 196 -ASDPP-VVAFQKLCARICKL-LSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGS------TDWATRKA 265 (898)
Q Consensus 196 -a~d~~-~~yL~~LlPRLlkL-Lks~~~kaK~alL~aIgSLA~vG-a~~~pyld~lLp~L~e~Lsd------dDW~vRKa 265 (898)
++..+ ..|+..++.+++.. +.-..-. --|+++-++|.+. -.-.......+|.+++.|.. .-...-..
T Consensus 228 FargapSskf~~y~n~~~ip~~fdkl~e~---rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fs 304 (460)
T KOG2213|consen 228 FARGAPSSKFVEYLNKHIIPHHFDKLTEE---RKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFS 304 (460)
T ss_pred hhcCCchhHHHHHHHhhhcccccccchHH---HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHH
Confidence 23333 24677777777665 2111122 2367777777544 22345566677776666533 23444556
Q ss_pred HHHHHHHHHHhcchHHHhh
Q 002638 266 AADALSALALHSSNLVIDG 284 (898)
Q Consensus 266 A~EaL~sLA~avge~L~Py 284 (898)
-+|||-++..++|.+...+
T Consensus 305 yvEClly~~h~Lg~k~pn~ 323 (460)
T KOG2213|consen 305 YVECLLYALHHLGHKKPNF 323 (460)
T ss_pred HHHHHHHHHHHHhhcCcch
Confidence 6788888888777433333
No 347
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=32.89 E-value=1.1e+02 Score=33.54 Aligned_cols=57 Identities=23% Similarity=0.200 Sum_probs=42.1
Q ss_pred cccccHHHHHHHHHHHHH-------HHHHHHHHHHHhhccccchhhhHhHhhhhhHHHHHHHHH
Q 002638 514 NNKGNWLAIQRQLMQLER-------QQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMAR 570 (898)
Q Consensus 514 ~~~~~l~~Ir~QL~qiE~-------qQs~l~~lLQ~Fmg~s~~~m~~Le~RV~gLE~~~deis~ 570 (898)
|..++.+.-=++|.|||| |=.-++||||---+=+-+...-|+.=+.-|+.++|+.++
T Consensus 41 N~~Qnilta~rsleqVnnQIqqlQnQaq~yqNmlqNta~l~~~iw~Ql~~~l~kl~~l~d~aqg 104 (252)
T COG5314 41 NYAQNILTAVRSLEQVNNQIQQLQNQAQQYQNMLQNTAALPFYIWGQLSQVLNKLQNLQDQAQG 104 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhH
Confidence 555555555555555555 455567888888888888889999999999999999764
No 348
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.75 E-value=1e+03 Score=32.97 Aligned_cols=175 Identities=16% Similarity=0.007 Sum_probs=93.2
Q ss_pred HHHHHHHhhcCCChHHHHHHHH------------HHHHHHHHHhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHHHH
Q 002638 121 IISHIVKRLKDSDSGMKEACRD------------SIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGAAM 187 (898)
Q Consensus 121 IL~~IlrrLkDpDs~VR~Ac~~------------tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegAas 187 (898)
.-.+|...++|+...-|....- ...++...++++.+ ...-.++++.++.| ....+..|--||-
T Consensus 1184 ~~k~i~~~F~~skf~~~l~~~~sie~~D~~~Pa~~F~rifK~l~r~yg----d~~~~~l~s~Le~l~~sk~~~~Q~laAE 1259 (1710)
T KOG1851|consen 1184 SEKIIRDAFSDSKFLSRLINFLSIEKEDIFNPADTFCRIFKGLFRNYG----DVKLPALKSHLELLMASKKENEQLLAAE 1259 (1710)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhccccccChHHHHHHHHHHHHHhCC----chhhhhhhHHHHHHHhcccchHHHHHHH
Confidence 3345555555555444443332 23344444444321 33444888888888 5667889999999
Q ss_pred HHHHHHHhcCCCCc----hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCcccHHHHHHHHHHhhCCCCHHHH
Q 002638 188 CMAKMVECASDPPV----VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVGAIAPQSLEPLLQSIHECLGSTDWATR 263 (898)
Q Consensus 188 ALAkiIE~a~d~~~----~yL~~LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~~pyld~lLp~L~e~LsddDW~vR 263 (898)
.|+.++-+...-.= ..-+-|+|+|-+.+.+-.. -++...|+.+. +...+-+....+.-|+++|-..+-..=
T Consensus 1260 ilaG~i~g~k~~~f~e~~~~W~~L~p~L~~~~~~it~----ea~~~W~~~i~-ti~~pts~~r~~~~lie~l~~p~~~a~ 1334 (1710)
T KOG1851|consen 1260 ILAGLIHGSKHWDFEELDKLWNLLNPCLRQFFLNITV----EADKAWGAAIA-TICIPTSDPRMLWQLIELLIPPTGTAT 1334 (1710)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhhhh----hhhhhHHHHHH-HHhcccchHHHHHHHHHHhcCCCCchh
Confidence 99999987633221 2344455666555554322 23333443321 011123444566667777666442221
Q ss_pred HHHHHHHHHHHHhcch---HHHhhHHHHHHHHHhhhcCCChhhHH
Q 002638 264 KAAADALSALALHSSN---LVIDGATSTLTVLEACRFDKIKPVRD 305 (898)
Q Consensus 264 KaA~EaL~sLA~avge---~L~Py~~~~I~~LE~~RfDKvKpVRD 305 (898)
- |++....+-.+.-+ .+......++++++.+-.-+..-||+
T Consensus 1335 ~-~~er~~~l~~al~e~~~~vsel~~~~~kl~e~~~n~~~~n~~~ 1378 (1710)
T KOG1851|consen 1335 L-AAERQLLLQKALIEFEYRVSELFYSLVKLLEKSLNQTLINVRI 1378 (1710)
T ss_pred H-HHHHHHHHHHhhhhhhccHHHHHHHHHHHHhhhccccccCcch
Confidence 1 22222222222222 23334678889999887777766665
No 349
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=32.62 E-value=3.9e+02 Score=27.09 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh--
Q 002638 38 MVEMKQKILTSLSKLA--DRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL-- 113 (898)
Q Consensus 38 ~~eLK~rll~~L~KLs--DrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~-- 113 (898)
.||-+.+..+.|..|. -...++.|.=.|+- ..+ -.-+.+||.+.+...+-..|---+.++..+++.+...
T Consensus 3 pFE~r~~F~~~L~~L~aS~qSi~kaa~fAlk~--~~~----~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~ 76 (139)
T PF12243_consen 3 PFEVRMQFTQLLRRLNASQQSIQKAAQFALKN--RDM----EEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK 76 (139)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHc--ccc----HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc
Confidence 4899999999999994 22344444445553 222 2344666666665555667777888888898887633
Q ss_pred -chhhHHHHH
Q 002638 114 -TSTHVTKII 122 (898)
Q Consensus 114 -I~PhLpkIL 122 (898)
-.+|...|.
T Consensus 77 ~~~~Yv~~l~ 86 (139)
T PF12243_consen 77 YNYPYVSMLQ 86 (139)
T ss_pred ccchhHHHHH
Confidence 355544443
No 350
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=32.32 E-value=9.4e+02 Score=28.77 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=104.1
Q ss_pred ChhhHHHHHHHHHHHHHHhchhchhhH------HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHh
Q 002638 92 KPAVKKESVRLLALVCELHSELTSTHV------TKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGL 165 (898)
Q Consensus 92 k~~vRKeAIlLLG~IAEg~gd~I~PhL------pkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~ 165 (898)
+..+.+..+.++.-+....+....-++ +......++.|...|..|...++..++.|+.+-..... ......
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~---~~~l~~ 143 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKME---GSDLDY 143 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccc---hhHHHH
Confidence 455566666666555555433222111 12233344466678889999999999999876532111 122333
Q ss_pred hHHHHHHHHhc-CCHhHHHHHHHHHHHHHHhcCCCCchhH-HHHHHHHHHHhcCC--chhhHHHHHHHHHHHH--hcccc
Q 002638 166 FVKPLFEAMME-QNKGVQSGAAMCMAKMVECASDPPVVAF-QKLCARICKLLSNQ--NFMAKASLLPVVGSLS--QVGAI 239 (898)
Q Consensus 166 lL~pL~eaL~e-qnk~VQegAasALAkiIE~a~d~~~~yL-~~LlPRLlkLLks~--~~kaK~alL~aIgSLA--~vGa~ 239 (898)
++..|...|.. .+...|..|..||+.++..-..- .-+. ..-++.|..+|+.. .++..-.++=||=-+. .-+..
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH
Confidence 55556666643 24556666779999988642110 0011 12455566666542 3444333333333322 11111
Q ss_pred CcccHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHhc-----chHHHh-----hHHHHHHHHHhhhcCCChhhHH
Q 002638 240 APQSLEPLLQSIHECLGST--DWATRKAAADALSALALHS-----SNLVID-----GATSTLTVLEACRFDKIKPVRD 305 (898)
Q Consensus 240 ~~pyld~lLp~L~e~Lsdd--DW~vRKaA~EaL~sLA~av-----ge~L~P-----y~~~~I~~LE~~RfDKvKpVRD 305 (898)
...+ ..++|.|.+.+... ..-+| .++-+|..+...- ...+.+ -+..+++.|+...+...+ +.+
T Consensus 223 ~~~~-~~~i~~l~~i~k~s~KEKvvR-v~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~Ded-L~e 297 (429)
T cd00256 223 VLKR-LSLIQDLSDILKESTKEKVIR-IVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDED-LTD 297 (429)
T ss_pred hhcc-ccHHHHHHHHHHhhhhHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHH-HHH
Confidence 1111 35788888877663 23344 3344555555532 111222 234566777777774333 444
No 351
>COG5543 Uncharacterized conserved protein [Function unknown]
Probab=31.84 E-value=7.1e+02 Score=32.72 Aligned_cols=176 Identities=14% Similarity=0.171 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHHHHHhc--hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHH
Q 002638 93 PAVKKESVRLLALVCELHS--ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPL 170 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~g--d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL 170 (898)
|..=|+|-.+|..+...++ ..-..+...++-..+..+++.- |-..+.--|-.+++++..+-.+...+.+.+.+
T Consensus 653 wR~~KE~ssll~~~l~k~~~T~~~l~~~g~L~~v~L~~IrH~G-----af~~V~p~l~~~c~~C~~ef~e~~~~~L~k~~ 727 (1400)
T COG5543 653 WRNMKECSSLLCGMLLKYPLTRGNLALSGRLVQVLLSHIRHLG-----AFLQVSPYLNMVCKRCNMEFEEDELLELVKVS 727 (1400)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHhccc-----hHHHHhHHHHHHHHHhcccCcccchHHHHHHH
Confidence 5555666666666655533 2234456666666666665433 11112222222333221111111122233333
Q ss_pred HHHHhcCCHhHH---HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCchh-------hHHHHHHHHHHHHhcc---
Q 002638 171 FEAMMEQNKGVQ---SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFM-------AKASLLPVVGSLSQVG--- 237 (898)
Q Consensus 171 ~eaL~eqnk~VQ---egAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~k-------aK~alL~aIgSLA~vG--- 237 (898)
+... +..+.+- .|.=.-+++++-...+.-.+.|++.+-+|+.+.+.|..+ .+..++.+|.+|+.-+
T Consensus 728 ~~~~-ek~~~ItRRSGGiPll~tsIL~A~~~K~~~Lle~t~~~Ll~~a~~p~~~~~~eFDLpqVha~N~l~~If~e~~Ls 806 (1400)
T COG5543 728 FNRI-EKCKAITRRSGGIPLLFTSILRAEVTKYPSLLERTLKRLLELAETPESSHQDEFDLPQVHALNILSRIFEEGCLS 806 (1400)
T ss_pred HHHH-HHhhHHHhcCCCcchhHHHHHHhcccccchHHHHHHHHHHHHHhCCCCcccccccchhhHHHHHHHHHHhccccc
Confidence 3222 2222111 122333444554433434467889999999999888555 5678999999997544
Q ss_pred ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 002638 238 AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALA 274 (898)
Q Consensus 238 a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA 274 (898)
...+.|++..+.--+.+..++=|++|--.+..+.++.
T Consensus 807 s~~~~~ieea~~La~~~f~~~lWaiRNcsImLFT~Lv 843 (1400)
T COG5543 807 SKLPLQIEEAFGLAFKCFRSNLWAIRNCSIMLFTNLV 843 (1400)
T ss_pred cccHHHHHHHHHHHHhccccceeeecccchHHHHHHH
Confidence 3457888888888889999999999998888877654
No 352
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=31.17 E-value=1.2e+02 Score=29.30 Aligned_cols=61 Identities=18% Similarity=0.496 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh
Q 002638 41 MKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL 113 (898)
Q Consensus 41 LK~rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~ 113 (898)
+|..++.+|..+ ..+..+ ..+..++ .|+.+|+|-. .++.+|..|+-|+.++-++++++.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Q--------d~vr~~~--Gi~liL~~c~--iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQ--------DLVRELG--GIPLILSCCN--IDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHH--------HHHHHcC--ChHHHHHhcC--CCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 566777777777 222222 2223233 4888898854 56778999999999999999998865
No 353
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.15 E-value=1e+02 Score=31.00 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcc-hHHHhhHHHHHHHHH
Q 002638 246 PLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATSTLTVLE 293 (898)
Q Consensus 246 ~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avg-e~L~Py~~~~I~~LE 293 (898)
.+-..+.++|.+.|..+.+.|++||.. .. +.+.||.+.+-+.+.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~----~k~~~l~pY~d~L~~Lld 61 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLT----WKDPYLTPYKDNLENLLD 61 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHcC
Confidence 344456688999999999999999975 33 688999888777776
No 354
>PHA01351 putative minor structural protein
Probab=31.05 E-value=7.7e+02 Score=31.40 Aligned_cols=33 Identities=0% Similarity=-0.035 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcC
Q 002638 185 AAMCMAKMVECASDPPVVAFQKLCARICKLLSN 217 (898)
Q Consensus 185 AasALAkiIE~a~d~~~~yL~~LlPRLlkLLks 217 (898)
+..+|+.+..+.......++..++.-++..|.+
T Consensus 120 ~~~s~~~~~~~i~n~~~q~~~~~isd~~~~~~~ 152 (1070)
T PHA01351 120 FINSAYSFFQNVANDFAQIISGVISDFLNFFGA 152 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555554444444555566666666654
No 355
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=30.45 E-value=1.4e+03 Score=30.08 Aligned_cols=260 Identities=13% Similarity=0.074 Sum_probs=133.5
Q ss_pred chhhhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhhcCC-CChhhHHHHHHHHHHHH
Q 002638 31 SLSSHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT--LSQESLPMLLNCLYESSND-PKPAVKKESVRLLALVC 107 (898)
Q Consensus 31 ~~s~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~--L~pe~Lp~fLs~L~es~~s-~k~~vRKeAIlLLG~IA 107 (898)
+.++-.++..+..=.-.|.++.---.|+......++..--. -..-.+.++.-.+.....+ .+-..|..-+.+++.+.
T Consensus 483 ~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii 562 (947)
T COG5657 483 SESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRII 562 (947)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Confidence 56777777666655555555552111333333333332211 1111255555555554443 34668888999999999
Q ss_pred HHhchhchhhHHHHHHHHHHh----hcCCC-hHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHH
Q 002638 108 ELHSELTSTHVTKIISHIVKR----LKDSD-SGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQ 182 (898)
Q Consensus 108 Eg~gd~I~PhLpkIL~~Ilrr----LkDpD-s~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQ 182 (898)
..-++.+.|..+.|++.+.+- -++|. +.+-+...+.|+.++..... .+...++-+..+|.-..+.+-
T Consensus 563 ~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~~~~~--------~~~~~ip~l~~~l~p~~~~l~ 634 (947)
T COG5657 563 IIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVFLKSG--------MCEITIPTLVLALVPEFPVLL 634 (947)
T ss_pred HhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHhhhc--------ccccchHHHHHhhCccchhhh
Confidence 999999999777777765544 45553 56788888999999988832 255666777777743323322
Q ss_pred -HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCC-----chhhHHHHHHH---HHHHH-hccccCcc-cHHHHHHHH
Q 002638 183 -SGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQ-----NFMAKASLLPV---VGSLS-QVGAIAPQ-SLEPLLQSI 251 (898)
Q Consensus 183 -egAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~-----~~kaK~alL~a---IgSLA-~vGa~~~p-yld~lLp~L 251 (898)
+.|..-...+.......+.++-+..+|-+.+++..+ --+.|..++.. +-+.. .-+.+|.. .+...+--+
T Consensus 635 ~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~~~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~ 714 (947)
T COG5657 635 SEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPSLATELLPTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGIL 714 (947)
T ss_pred hhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhcccCchHHHHHHHHHHHHHHHHHhhhhcccccccccchhhhHHHH
Confidence 233222222222221222222223345555555432 11222222222 22211 11234433 333444445
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHhcc--hHHHhhHHHHHH-HHHhhhcCCCh
Q 002638 252 HECLGSTDWATRKAAADALSALALHSS--NLVIDGATSTLT-VLEACRFDKIK 301 (898)
Q Consensus 252 ~e~LsddDW~vRKaA~EaL~sLA~avg--e~L~Py~~~~I~-~LE~~RfDKvK 301 (898)
+..+..+-|+. .|=.+..+...+. ....||+..+.- .++....++.+
T Consensus 715 ~~ll~~e~~~~---~~f~~~~~v~~l~~~~i~~~~v~~i~~lll~rl~ns~~~ 764 (947)
T COG5657 715 QYLLGSEPHDA---LCFLNLTVVETLYLENIYEPYVNLIFVLLLSRLKNSKTE 764 (947)
T ss_pred HHHHhcchHHH---HHHhhHHHHHHhHHHHHHhhcHHHHHHHHHHHhhcccch
Confidence 55566666663 3444444444444 345677775544 33455555555
No 356
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=30.27 E-value=2e+02 Score=28.90 Aligned_cols=72 Identities=13% Similarity=0.076 Sum_probs=50.7
Q ss_pred HhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCc-hhH-HHHHHHHHHHhc------CCchhhHHHHHHHHHHHHh
Q 002638 164 GLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VAF-QKLCARICKLLS------NQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 164 ~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~-~yL-~~LlPRLlkLLk------s~~~kaK~alL~aIgSLA~ 235 (898)
...++.|...|...|+++|.-|...|..++++++..+. ++- ...+..|++++. ..+..+|.-+|.+|..-+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45667777778888999999999999999999866442 221 124445566664 2466788888888887753
No 357
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=30.11 E-value=1.6e+02 Score=37.15 Aligned_cols=135 Identities=12% Similarity=0.047 Sum_probs=87.8
Q ss_pred CHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchh---chh---hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 002638 76 SLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSEL---TST---HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSK 149 (898)
Q Consensus 76 ~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~---I~P---hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~ 149 (898)
.+.+|+.+|.. +.+..+=+++.=+|-+++-+-+.. +.- --++.+++|+..|.-.++.|-.+++-+|..|+.
T Consensus 519 vVr~Yl~Ll~~---s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 519 VVRPYLLLLAL---SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR 595 (717)
T ss_pred HHHHHHHHHHH---hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence 46677777773 345666777777787777665422 222 236778999999999998887788888888888
Q ss_pred HHhcccccCCchhHHhhHHHHHHHHhc-CC-----HhHHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHHhcCC
Q 002638 150 LYLNGKEENNGTVVGLFVKPLFEAMME-QN-----KGVQSGAAMCMAKMVECASDPPVVAFQ-KLCARICKLLSNQ 218 (898)
Q Consensus 150 ~lik~~~e~~~~~~~~lL~pL~eaL~e-qn-----k~VQegAasALAkiIE~a~d~~~~yL~-~LlPRLlkLLks~ 218 (898)
..-... .+-...++-|++.|-+ .+ ...-.++|..|..|+......-..+++ .-+++|+-+.++.
T Consensus 596 d~rnk~-----ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~ 666 (717)
T KOG1048|consen 596 DIRNKE-----LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQ 666 (717)
T ss_pred Cchhhh-----hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhccc
Confidence 773221 2234577888888832 22 566678999999999432111112333 3567777777764
No 358
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=29.94 E-value=1.1e+02 Score=26.14 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHHHHHHHHHhcCCcc
Q 002638 806 VANEVLHAIGQFLLEQNLFDICLSWIQQLVELVLENGPHV 845 (898)
Q Consensus 806 ~~~e~l~~i~~~l~~~~~~d~~~~w~qq~~~l~~~~g~~~ 845 (898)
..-.+++.|+..+.++.=|+-++.+.++.+++....|++-
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 42 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH 42 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4557889999999999999999999999999977788754
No 359
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=29.83 E-value=3.5e+02 Score=28.28 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=51.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCCh----HH-HH
Q 002638 64 DLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS----GM-KE 138 (898)
Q Consensus 64 eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs----~V-R~ 138 (898)
+.-.++..-++-.....|..|..... ++.+|+.|+..|..+. .+.+.-||++++..+-----+..+ .+ |.
T Consensus 58 e~~~lL~~W~~i~~~~aLeLL~~~f~--d~~VR~yAV~~L~~~s---d~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ra 132 (171)
T cd00872 58 QMYQLLKRWPKLKPEQALELLDCNFP--DEHVREFAVRCLEKLS---DDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRA 132 (171)
T ss_pred HHHHHHHCCCCCCHHHHHHHCCCcCC--CHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHcccccCCHHHHHHHHHH
Confidence 33344444333345556777765554 4899999999886533 255788888887766544322222 33 44
Q ss_pred HHHHHHHHHHHHHhcc
Q 002638 139 ACRDSIGSLSKLYLNG 154 (898)
Q Consensus 139 Ac~~tLG~LA~~lik~ 154 (898)
.+...||...-|+++.
T Consensus 133 l~n~~igh~lfW~L~~ 148 (171)
T cd00872 133 LRNQRIGHFFFWHLRS 148 (171)
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4445677777777653
No 360
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=29.81 E-value=56 Score=23.63 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCC
Q 002638 93 PAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDS 132 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDp 132 (898)
|.+|.+++.+||.+. + +.-++.+++.|+|+
T Consensus 1 ~~vR~~aa~aLg~~~--~--------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLG--D--------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcC--C--------HhHHHHHHHHhcCC
Confidence 568999999999872 2 33345556666553
No 361
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=29.74 E-value=5.1e+02 Score=26.05 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=63.8
Q ss_pred HHHHHcC-CChh-HHHHHHHHHHHHHh------cCCCCCHHHHHHHHhhhc--------CCCCh---h-----hHH-HHH
Q 002638 46 LTSLSKL-ADRD-THQIAIEDLEKTIQ------TLSQESLPMLLNCLYESS--------NDPKP---A-----VKK-ESV 100 (898)
Q Consensus 46 l~~L~KL-sDrD-T~k~Aa~eLD~Ia~------~L~pe~Lp~fLs~L~es~--------~s~k~---~-----vRK-eAI 100 (898)
..++..| +|.- .|+-|+++|..+.. .++...+..++.+|+... ...+. . .|- .|.
T Consensus 7 ~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 7 NSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 3455555 2222 56789999999984 344445555555555442 11111 1 122 266
Q ss_pred HHHHHHHHHhchhc-hhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHH
Q 002638 101 RLLALVCELHSELT-STHVTKIISHIVKRLKDSD-SGMKEACRDSIGSLS 148 (898)
Q Consensus 101 lLLG~IAEg~gd~I-~PhLpkIL~~IlrrLkDpD-s~VR~Ac~~tLG~LA 148 (898)
.+|-.+++.+...+ .-++..|+.+|...|.+|+ ..+.-.+.+.+-.|.
T Consensus 87 ~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~ 136 (155)
T PF11640_consen 87 SALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILK 136 (155)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 66767777666654 4578899999999999998 566666666666663
No 362
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=29.71 E-value=4.5e+02 Score=26.49 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHh------hHHHHHHHHHhhhc---CCChhhHHHHHHHHHHH
Q 002638 244 LEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVID------GATSTLTVLEACRF---DKIKPVRDSMNEALQLW 314 (898)
Q Consensus 244 ld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~P------y~~~~I~~LE~~Rf---DKvKpVRD~A~eALelW 314 (898)
....+..|...|.+.+..+--.|+..|-++....|..|.. |+..+++.+. -++ .....||+-+++.++.|
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~-~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVS-PKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhc-cccCCCCCCHHHHHHHHHHHHHH
Confidence 3456666777788888888888888999999999977653 3456666653 222 24577999999999999
Q ss_pred HH
Q 002638 315 KK 316 (898)
Q Consensus 315 K~ 316 (898)
..
T Consensus 115 ~~ 116 (139)
T cd03567 115 TL 116 (139)
T ss_pred HH
Confidence 85
No 363
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.60 E-value=4.8e+02 Score=24.55 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhh---------cCCChHHHHHHHHHH
Q 002638 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL---------KDSDSGMKEACRDSI 144 (898)
Q Consensus 74 pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrL---------kDpDs~VR~Ac~~tL 144 (898)
++....++..|...+.+.+|.+.--++.+|..++.-|++.+..++..-. ++...+ .|.+..||.-+...+
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 4456778888888888889999999999999999999977554443221 222222 245678888877766
Q ss_pred HHH
Q 002638 145 GSL 147 (898)
Q Consensus 145 G~L 147 (898)
..+
T Consensus 111 ~~w 113 (115)
T cd00197 111 QLW 113 (115)
T ss_pred HHH
Confidence 554
No 364
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=29.54 E-value=2.5e+02 Score=25.84 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHH
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDS 143 (898)
Q Consensus 77 Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~t 143 (898)
|.||...+. ...+..+|+-.+.++..+.+.+++.+..=++.|+..+-....|.+..+-..|-.+
T Consensus 19 L~Pf~~i~~---~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 19 LKPFEYIMS---NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHh---ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 445444432 3467889999999999999999999999999999999999998776555444443
No 365
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=29.41 E-value=1.2e+03 Score=28.86 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHHHhhcCCCh--------HHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHH
Q 002638 115 STHVTKIISHIVKRLKDSDS--------GMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAA 186 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLkDpDs--------~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAa 186 (898)
.....+|...+...|+-.|+ .+|.+..+..+.|...+.+--+. .+-.-|+.-|-+...+.+ -+-
T Consensus 30 ~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~---sVsdRF~~eL~~~~~~~~-----~~~ 101 (552)
T PF14222_consen 30 EELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFV---SVSDRFIAELEKLRKDSN-----DAE 101 (552)
T ss_pred HHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhCh---HHHHHHHHHHHHhcccCC-----chH
Confidence 33456777777787776665 34656666555555555322121 122233333333222112 233
Q ss_pred HHHHHHHHhcCCCCc-----hhHH---HHHHHHHHHhcCCc--hhhHHHHHHHHHHH----Hhcc--ccCcc----cHHH
Q 002638 187 MCMAKMVECASDPPV-----VAFQ---KLCARICKLLSNQN--FMAKASLLPVVGSL----SQVG--AIAPQ----SLEP 246 (898)
Q Consensus 187 sALAkiIE~a~d~~~-----~yL~---~LlPRLlkLLks~~--~kaK~alL~aIgSL----A~vG--a~~~p----yld~ 246 (898)
.-+..+|.+++..-. +-++ ..|..+.+++...| ..+|-|.-+++..| |... +...| .++.
T Consensus 102 ~~~~~li~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~ 181 (552)
T PF14222_consen 102 SKIELLIMGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET 181 (552)
T ss_pred HHHHHHHhhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH
Confidence 445667777744221 2222 35566667766554 22666655555554 2222 22233 3444
Q ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHHHHhcc-hHHHhhHH-HHHHHHHhhhcCCChhhHHHHHHHHH--HHHHh
Q 002638 247 LLQSIHECLGS-TDWATRKAAADALSALALHSS-NLVIDGAT-STLTVLEACRFDKIKPVRDSMNEALQ--LWKKI 317 (898)
Q Consensus 247 lLp~L~e~Lsd-dDW~vRKaA~EaL~sLA~avg-e~L~Py~~-~~I~~LE~~RfDKvKpVRD~A~eALe--lWK~L 317 (898)
+.+.+.+.+.. ..|.. +.-.+..+....+ +.|...-- +||+.+...-.|| ..|-++++++- +|--+
T Consensus 182 i~~~~~~~~~K~khw~~---afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL 252 (552)
T PF14222_consen 182 IYPRAAKMMSKPKHWNV---AFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYL 252 (552)
T ss_pred HHHHHHHHHhCcchhhh---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHH
Confidence 44555555443 56776 4555555555556 88887777 6888777666565 78888777775 56666
No 366
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=29.37 E-value=7.2e+02 Score=26.47 Aligned_cols=58 Identities=9% Similarity=0.069 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhhcC--------CChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 117 HVTKIISHIVKRLKD--------SDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 117 hLpkIL~~IlrrLkD--------pDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
.++.+++.+...... ....+=..+|..+..+..+--.. ..+.-..+..++..|+..|.
T Consensus 27 ~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~-l~~r~hll~~~l~~LL~~l~ 92 (223)
T PF10441_consen 27 NIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFK-LSGRFHLLLSVLQRLLRCLF 92 (223)
T ss_pred hHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHH-HcCCChHHHHHHHHHHHHHH
Confidence 356666655555432 23466677777777776654221 11112335556667777775
No 367
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=29.21 E-value=1.9e+02 Score=36.40 Aligned_cols=94 Identities=17% Similarity=0.307 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHH-------------hchhchhhHHHHHHHHHHhhcCCChHHHHH
Q 002638 73 SQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCEL-------------HSELTSTHVTKIISHIVKRLKDSDSGMKEA 139 (898)
Q Consensus 73 ~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg-------------~gd~I~PhLpkIL~~IlrrLkDpDs~VR~A 139 (898)
+...+.++|..|+..-+-+ +.=-.++-+|+.++.. |.+.+.|+|..+-..=+.+..|+....|.-
T Consensus 282 ps~~Y~pL~~LLl~s~d~~--p~taS~v~ileEl~~~kqdva~~LVrLfl~~~r~~pfl~~L~~~ei~rtqD~NTlFRgN 359 (800)
T KOG2059|consen 282 PSQYYKPLMDLLLESVDVQ--PITASAVAILEELCREKQDVARPLVRLFLHSDRIVPFLSALAVNEIKRTQDPNTIFRGN 359 (800)
T ss_pred cHhhhhhHHHHHHhccccc--ccchhHHHHHHHHhhhhhhHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCCceeeecc
Confidence 3444666677666543211 1112344455555442 445677888888888899999999888754
Q ss_pred H--HHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 140 C--RDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 140 c--~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
. ...+-.+.... + ..++...|+|+++-+-
T Consensus 360 SLasK~mde~mkl~---G----m~YLh~tLkPvi~kI~ 390 (800)
T KOG2059|consen 360 SLASKMMDEFMKLA---G----MHYLHVTLKPVIDKIF 390 (800)
T ss_pred chHHHHHHHHHHHh---c----hHHHHHHhHHHHHHHH
Confidence 3 33333333333 2 3678889999999883
No 368
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=28.37 E-value=1e+03 Score=29.74 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCCh-HHHHHHHHHHH
Q 002638 74 QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDS-GMKEACRDSIG 145 (898)
Q Consensus 74 pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs-~VR~Ac~~tLG 145 (898)
|+.+.++|+.|...+.+.+|..|...-.+.-.|. +.-...|.+-+|+++-.|+|++. .+|-..|.-|+
T Consensus 194 P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~----Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia 262 (851)
T KOG3723|consen 194 PQPINPHLPELLALLSQLEPEQYHLLRLLHVLIK----QKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIA 262 (851)
T ss_pred CCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4444444444444444444444433222222222 12233455566666666666652 34443333333
No 369
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=28.12 E-value=1.9e+02 Score=36.14 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHH-HHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHhccc
Q 002638 78 PMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVT-KIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGK 155 (898)
Q Consensus 78 p~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLp-kIL~~IlrrL-kDpDs~VR~Ac~~tLG~LA~~lik~~ 155 (898)
-.||..|-+.+. ++..|-.++.+||.++..++-.+-.-+. .++..|+++| .|.+..|-.++..+|..|.-++.
T Consensus 69 K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip--- 143 (668)
T PF04388_consen 69 KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP--- 143 (668)
T ss_pred HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc---
Confidence 355666666663 5789999999999999987754322221 4456677774 57788888888888888877772
Q ss_pred ccCCchhHHhhHHHHHHHH
Q 002638 156 EENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 156 ~e~~~~~~~~lL~pL~eaL 174 (898)
.....+|+-||+..
T Consensus 144 -----~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 144 -----SSLGPHLPDLFNIF 157 (668)
T ss_pred -----chhhHHHHHHHHHH
Confidence 22455666666554
No 370
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.89 E-value=1.3e+02 Score=32.49 Aligned_cols=31 Identities=6% Similarity=-0.061 Sum_probs=17.3
Q ss_pred cccCcc-CCCCCCCCccCCCCccccCCCCCCC
Q 002638 604 YSGTKY-NGRTPFGERFAQSDGVAASTRGRGP 634 (898)
Q Consensus 604 ~~~sKf-~r~~~~~~~~~~~~~~~~~~~~~~~ 634 (898)
||++-| |+.+++-.|+...+.-.-.-.+|+|
T Consensus 84 FLs~~f~~gt~~e~app~~a~~p~~~aap~S~ 115 (233)
T COG3416 84 FLSNAFKWGTPQEPAPPANAPPPKEPAAPPSW 115 (233)
T ss_pred hhhhhcccCCCCCCCCCcCCCCCCCCCCCCCc
Confidence 899988 7766664444443333333345555
No 371
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.80 E-value=5.4e+02 Score=25.34 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhH--HHHHHHHHhhhcCCC-hh-hHHHHHHHHHHHHH
Q 002638 243 SLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGA--TSTLTVLEACRFDKI-KP-VRDSMNEALQLWKK 316 (898)
Q Consensus 243 yld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~--~~~I~~LE~~RfDKv-Kp-VRD~A~eALelWK~ 316 (898)
.....+..|...|.+.+..+-..|+..|-.+....|..|..++ ..+++.|...-.++. .+ ||+-+++.++.|..
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4456677788888888888888899999999999997765443 334454443322322 23 99999999999987
No 372
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=27.61 E-value=4.1e+02 Score=26.98 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHHhcC---CchhhH-HHHHHHHHHHHh-ccccCcccHHHHHHHHHH
Q 002638 180 GVQSGAAMCMAKMVECASD-PPVVAFQKLCARICKLLSN---QNFMAK-ASLLPVVGSLSQ-VGAIAPQSLEPLLQSIHE 253 (898)
Q Consensus 180 ~VQegAasALAkiIE~a~d-~~~~yL~~LlPRLlkLLks---~~~kaK-~alL~aIgSLA~-vGa~~~pyld~lLp~L~e 253 (898)
.+...+..|+-+++--..+ ...|.+-+|+..-..-+.. .....| -..+..+.+++. ...++.||+..++....+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777766433 4456666666666543322 122233 367777888764 336789999999998777
Q ss_pred hhCCC------C----HHHHHHHHHHHHHHHHh
Q 002638 254 CLGST------D----WATRKAAADALSALALH 276 (898)
Q Consensus 254 ~Lsdd------D----W~vRKaA~EaL~sLA~a 276 (898)
.|... + |.++..++.+|......
T Consensus 116 ~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~ 148 (153)
T PF08146_consen 116 LLKQFNSSKTESKSKSWELWRLVLSTLQKCFLH 148 (153)
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence 76542 3 88999988888776544
No 373
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=27.34 E-value=87 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHHHHH
Q 002638 809 EVLHAIGQFLLEQNLFDICLSWIQQLVELV 838 (898)
Q Consensus 809 e~l~~i~~~l~~~~~~d~~~~w~qq~~~l~ 838 (898)
+++..++..+.+.+-|+.++-++++.+++-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 578889999999999999999999998874
No 374
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=27.17 E-value=1.3e+02 Score=27.27 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHhchhchhhHH--HHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHH
Q 002638 95 VKKESVRLLALVCELHSELTSTHVT--KIISHIVKRLKD-SDSGMKEACRDSIGSLSKLY 151 (898)
Q Consensus 95 vRKeAIlLLG~IAEg~gd~I~PhLp--kIL~~IlrrLkD-pDs~VR~Ac~~tLG~LA~~l 151 (898)
..|+|+-++|.++..-.. .++|+ .+++.|++-... |-..||-+|-.++|-++.--
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 468999999999875332 22232 578888888664 55799999999999888654
No 375
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=26.47 E-value=1.7e+02 Score=32.53 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHH
Q 002638 95 VKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAM 174 (898)
Q Consensus 95 vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL 174 (898)
.-.+.+++++.+=+ ....+--.+..-++++|+-+... .+.-|+||+|+....=-+. .+.-+-+..+...++.|
T Consensus 97 ~~~emvRl~asLEr----L~~~~K~elg~wll~rL~~~~~~--~~~wWAlGRlgaR~p~yGs-~h~Vvp~~~~~~wl~~l 169 (249)
T PF12531_consen 97 SYDEMVRLAASLER----LPVEDKIELGEWLLKRLQKPSES--AQHWWALGRLGARVPFYGS-AHNVVPPEVAEQWLDAL 169 (249)
T ss_pred CHHHHHHHHHhhcc----CCHHHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHhcCcccCC-cccccCHHHHHHHHHHH
Confidence 34556666655422 22445566778888899877743 4455999999988732221 12233456677777777
Q ss_pred hcCCHhHHHHHHHHHHHHHHhc----CCCCchhHHHHHHHHH
Q 002638 175 MEQNKGVQSGAAMCMAKMVECA----SDPPVVAFQKLCARIC 212 (898)
Q Consensus 175 ~eqnk~VQegAasALAkiIE~a----~d~~~~yL~~LlPRLl 212 (898)
.+.+..-...|+-|+..++.-. .|+...+-.+++.+|.
T Consensus 170 l~~dwk~~~~a~fA~~q~aR~TgDR~rDl~~~~R~~v~~~L~ 211 (249)
T PF12531_consen 170 LALDWKKPPPAAFAAVQMARMTGDRARDLPDALRQKVIEKLK 211 (249)
T ss_pred HhcCCCCCchHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence 6655443334555555555544 3333334444444444
No 376
>KOG1810 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.45 E-value=6.2e+02 Score=34.22 Aligned_cols=182 Identities=16% Similarity=0.203 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHHHHHhc-hh-c-hhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHH
Q 002638 93 PAVKKESVRLLALVCELHS-EL-T-STHVTKIISHIVKRLKDS-DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVK 168 (898)
Q Consensus 93 ~~vRKeAIlLLG~IAEg~g-d~-I-~PhLpkIL~~IlrrLkDp-Ds~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~ 168 (898)
|..-|+...+||.|.+.+. +. + .-.|++|=.+....|-.- ...--+.+..+...|++ ++........+.-..-|.
T Consensus 659 Wra~Kevs~ll~~Ii~k~~~~~~lt~~qLe~IG~lfl~~LaeikHrGAfe~~~~gf~~lC~-f~~s~~~~~~~lp~~wLe 737 (1417)
T KOG1810|consen 659 WRAVKEVSSLLETIIGKPQQDALLTPAQLEYIGSLFLLQLAEIKHRGAFESARPGFTALCS-FLQSNESRFPELPELWLE 737 (1417)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHhccchhhccccHHHHHH-HHHhcccccccCcHHHHH
Confidence 8888999999999998862 22 2 234555444444433110 00111222334666665 323211001122233444
Q ss_pred HHHHHHhcCCHhHH---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhcCCchh-------hHHHHHHHHHHHHhcc
Q 002638 169 PLFEAMMEQNKGVQ---SGAAMCMAKMVECASDP-PVVAFQKLCARICKLLSNQNFM-------AKASLLPVVGSLSQVG 237 (898)
Q Consensus 169 pL~eaL~eqnk~VQ---egAasALAkiIE~a~d~-~~~yL~~LlPRLlkLLks~~~k-------aK~alL~aIgSLA~vG 237 (898)
.+++.+.++...+- +|.=..+.++++...+. +.+.+++-+-+|+++.+.+... .+.+++.++.++...-
T Consensus 738 e~l~~i~~kt~~itRRSaGlP~ll~al~~te~~~~~k~ll~r~~~~Ll~ia~~p~~~~~~~~~~p~VHA~NvmkaIf~~~ 817 (1417)
T KOG1810|consen 738 ELLEKILAKTSGITRRSAGLPFLLTALVETELKLGMKELLPRCFCKLLKIAECPLPGEWGEGDEPRVHAMNVMKAIFTSS 817 (1417)
T ss_pred HHHHHHHhhcccchhccCCCCHHHHHHHHhhhcccchhhhHHHHHHHHHHhcCCCccccCCCcchhhhhHHHHHHHHccc
Confidence 55555533322221 23334555666654333 3456777778888888877544 3557888888886422
Q ss_pred ---ccCcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 002638 238 ---AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALAL 275 (898)
Q Consensus 238 ---a~~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~ 275 (898)
.....|+...|..-.+.+..+-|+.|-.|.-.+.++-.
T Consensus 818 ~LS~~~sef~s~Al~lAi~~fs~~~W~~RN~atlLfaALi~ 858 (1417)
T KOG1810|consen 818 ILSNERSEFQSRALRLAIEGFSHDMWAERNSATLLFAALIN 858 (1417)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCchHHhhhhhHHHHHHHHHH
Confidence 23467788888888888888889999999887776543
No 377
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=25.59 E-value=1.2e+03 Score=27.61 Aligned_cols=152 Identities=19% Similarity=0.273 Sum_probs=80.1
Q ss_pred ChhhHHHHHHHHHHHHHHhc----hhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhH
Q 002638 92 KPAVKKESVRLLALVCELHS----ELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFV 167 (898)
Q Consensus 92 k~~vRKeAIlLLG~IAEg~g----d~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL 167 (898)
+...|+-.+. .+++.+- ....||+..++.+|...++.-. +... +.+ ...+..++
T Consensus 201 ~~~l~~~il~---~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~---~~~~----~~~------------~~~~~~~l 258 (373)
T PF14911_consen 201 NEELRKFILQ---VIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQ---RQNE----NQI------------LTLLRLVL 258 (373)
T ss_pred hhHHHHHHHH---HHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcC---cccc----hhH------------HHHHHHhh
Confidence 3444554444 3344333 2367889999988887776521 0000 000 12356688
Q ss_pred HHHHHHHh--cCCHhHHHHHHHHHHHHHHhcCC----CCchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhccccC
Q 002638 168 KPLFEAMM--EQNKGVQSGAAMCMAKMVECASD----PPVVAFQK-LCARICKLLSNQNFMAKASLLPVVGSLSQVGAIA 240 (898)
Q Consensus 168 ~pL~eaL~--eqnk~VQegAasALAkiIE~a~d----~~~~yL~~-LlPRLlkLLks~~~kaK~alL~aIgSLA~vGa~~ 240 (898)
+++++++. +..+.+..-|...+..+++.... .+.+-+.. +..-+-+.+..-. ...+..+.++|. .-
T Consensus 259 p~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t----~~~f~~l~~vA~---l~ 331 (373)
T PF14911_consen 259 PSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYT----YQYFQFLEKVAE---LD 331 (373)
T ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHH---hC
Confidence 88888883 22344555677777777776531 11111111 1111111111111 123445556553 44
Q ss_pred cccHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHH
Q 002638 241 PQSLEPLLQSIHECLGS--------TDWATRKAAADALSA 272 (898)
Q Consensus 241 ~pyld~lLp~L~e~Lsd--------dDW~vRKaA~EaL~s 272 (898)
+..+..++|.+.+.+.+ .|-.+|++--+.+..
T Consensus 332 p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~~ 371 (373)
T PF14911_consen 332 PQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLSH 371 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 56677888888777655 577888766655543
No 378
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=25.53 E-value=1.8e+02 Score=26.86 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHhhhhhHHHHHHHHH
Q 002638 518 NWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDMAR 570 (898)
Q Consensus 518 ~l~~Ir~QL~qiE~qQs~l~~lLQ~Fmg~s~~~m~~Le~RV~gLE~~~deis~ 570 (898)
|+..|=+||+++|++....|+-=+.-...-++.+..|.+.+..|--++..+..
T Consensus 5 D~~~lv~~l~~~e~~~~~~l~~~~~~~~~k~sa~~~l~s~l~~l~~~~~~L~~ 57 (99)
T PF02465_consen 5 DTESLVDQLMQAERAPIDRLQQKKTSLEWKQSAYGSLNSKLSTLQSALSDLNS 57 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 67889999999999999888888888999999999999999999988888855
No 379
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=25.02 E-value=1.7e+02 Score=29.57 Aligned_cols=85 Identities=20% Similarity=0.342 Sum_probs=57.1
Q ss_pred HHHHHHHcC--CChhHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhch-h------c
Q 002638 44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE-L------T 114 (898)
Q Consensus 44 rll~~L~KL--sDrDT~k~Aa~eLD~Ia~~L~pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd-~------I 114 (898)
+++.+++++ .+.+....+-..|+.++..|+.+++..+|.++.+=. .++..=..|-.+|..|...++- . +
T Consensus 28 ~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WN--TNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~ 105 (141)
T PF08625_consen 28 RLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWN--TNSRTSHVAQRVLNAILKSHPPEELLKIPGL 105 (141)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhh--cccccHHHHHHHHHHHHHhCCHHHHHccccH
Confidence 444455444 233444448899999999999989999999998654 3344556788888888877662 2 3
Q ss_pred hhhHHHHHHHHHHhhc
Q 002638 115 STHVTKIISHIVKRLK 130 (898)
Q Consensus 115 ~PhLpkIL~~IlrrLk 130 (898)
...++-++|+.-|.++
T Consensus 106 ~~~le~lipYteRH~~ 121 (141)
T PF08625_consen 106 KEILEALIPYTERHFQ 121 (141)
T ss_pred HHHHHHHhhhHHHHHH
Confidence 3456666666655553
No 380
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=24.18 E-value=5.1e+02 Score=35.94 Aligned_cols=132 Identities=12% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHH---HHHHhcC---CCCCHHHHHHHHhhhc---------CCCChhhHHHHHHHH
Q 002638 39 VEMKQKILTSLSKLADRDTHQIAIEDL---EKTIQTL---SQESLPMLLNCLYESS---------NDPKPAVKKESVRLL 103 (898)
Q Consensus 39 ~eLK~rll~~L~KLsDrDT~k~Aa~eL---D~Ia~~L---~pe~Lp~fLs~L~es~---------~s~k~~vRKeAIlLL 103 (898)
.-||+.++.++...+ --++....+ ..|+.++ +...|.-+|.-|.-.. .+++-.+|-..++=+
T Consensus 1435 kaWrKe~~eLF~D~~---fFqmd~s~l~~W~~Iid~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRi 1511 (1749)
T KOG3613|consen 1435 KAWRKEFLELFLDNS---FFQMDLSCLRHWSSIIDHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRI 1511 (1749)
T ss_pred HHHHHHHHHHhcCcc---hheeeHHHHHHHHHHHHHHHhCCchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhh
Confidence 348888888776542 333333333 4444443 3334666666542111 133455666666666
Q ss_pred HHHHHHhc-hhchhhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhc
Q 002638 104 ALVCELHS-ELTSTHVTKIISHIVKRLK-DSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMME 176 (898)
Q Consensus 104 G~IAEg~g-d~I~PhLpkIL~~IlrrLk-DpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~e 176 (898)
..+.=+.+ |.-.+|+|.|+..|..-|+ +++|.||.++-=.+..|.=.+ ..++-...||.++--|...+..
T Consensus 1512 af~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~---Sp~hL~~LWPImv~ELv~vf~q 1583 (1749)
T KOG3613|consen 1512 AFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRI---SPDHLTSLWPIMVYELVQVFLQ 1583 (1749)
T ss_pred HhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhc---CHhhcccchHHHHHHHHHHHHH
Confidence 66655444 5578899999999999999 999999999988888888777 3334457799888877777743
No 381
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.15 E-value=1.7e+03 Score=29.15 Aligned_cols=206 Identities=14% Similarity=0.091 Sum_probs=105.2
Q ss_pred HhhhcCCCChhhHHHHHHHHHHHHHHhchhchh--hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCch
Q 002638 84 LYESSNDPKPAVKKESVRLLALVCELHSELTST--HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGT 161 (898)
Q Consensus 84 L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~P--hLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~ 161 (898)
|-+....-+-..|-..++.++ -++..+-+ ....++..|..-..-.||.-|..+..++|+++..+-+ +
T Consensus 68 LaDaF~~Gn~llRf~V~rv~~----q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE--f----- 136 (970)
T KOG1988|consen 68 LADAFPVGNNLLRFAVLRVDQ----QSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE--F----- 136 (970)
T ss_pred HHHHhccCcHHHHHHHHHHHh----hccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc--c-----
Confidence 334444445566666666665 22323222 2334444555555668999999999999999998822 1
Q ss_pred hHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHHhcccc
Q 002638 162 VVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNF--MAKASLLPVVGSLSQVGAI 239 (898)
Q Consensus 162 ~~~~lL~pL~eaL~eqnk~VQegAasALAkiIE~a~d~~~~yL~~LlPRLlkLLks~~~--kaK~alL~aIgSLA~vGa~ 239 (898)
...=-.+...|..+..---++|+.|.+++++-..+. --.||-++-.++..+.. ..|-.++.++.-+..-...
T Consensus 137 --n~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~F----A~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~ 210 (970)
T KOG1988|consen 137 --NQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDF----ACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG 210 (970)
T ss_pred --cchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhh----HHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh
Confidence 111123455665555555578888888888765443 22467777777776533 3444444444444211112
Q ss_pred CcccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHHHH-HHHhhhcCCChhhHHHHHHHHHH
Q 002638 240 APQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATSTLT-VLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 240 ~~pyld~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~I~-~LE~~RfDKvKpVRD~A~eALel 313 (898)
....+..+|..+...-+.+. - -+-+.++..+|...-.. +...+. .++...+|+-++||-.+++-+.+
T Consensus 211 A~ra~~l~m~lv~~tps~d~-~--v~fL~stT~Lasrs~~a----i~eq~d~l~q~~ked~~kivr~~vl~kl~~ 278 (970)
T KOG1988|consen 211 ASRAFGLCMSLVSGTPSIDR-V--VAFLYSTTNLASRSLVA----ISEQSDVLLQFLKEDERKIVRLKVLRKLDF 278 (970)
T ss_pred hHHHHHHHHHHhcCCCcccc-e--eeehhhhHHHHHHHHHH----hHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Confidence 22233344433333222211 0 01111222222211111 111222 33466778889888876555555
No 382
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.72 E-value=7.6e+02 Score=24.82 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHHHhc-cccCc------ccH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcchHHHhhHHHH
Q 002638 220 FMAKASLLPVVGSLSQV-GAIAP------QSL----EPLLQSIHECLGSTDWATRKAAADALSALALHSSNLVIDGATST 288 (898)
Q Consensus 220 ~kaK~alL~aIgSLA~v-Ga~~~------pyl----d~lLp~L~e~LsddDW~vRKaA~EaL~sLA~avge~L~Py~~~~ 288 (898)
...|...|++|.++... |..+. .++ +.+.+.|...+.+++..+=..++.++..|....+..+....+-+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888653 33332 222 34556677777666788888899999999988887776665555
Q ss_pred HHHHHhhhcC-CC--hhhHHHHHHHHHHHHHhh
Q 002638 289 LTVLEACRFD-KI--KPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 289 I~~LE~~RfD-Kv--KpVRD~A~eALelWK~La 318 (898)
+..+-..-.+ +. -..|.. +|+....++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~---~Le~l~~l~ 145 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKEL---ALEILRELC 145 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHH---HHHHHHHHH
Confidence 5544332222 11 235566 555555555
No 383
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.72 E-value=6.2e+02 Score=25.37 Aligned_cols=74 Identities=7% Similarity=0.088 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHhcchHHHh------hHHH-HHHHHHhhhcCCChhhHHHHHHHHHHH
Q 002638 243 SLEPLLQSIHECLG-STDWATRKAAADALSALALHSSNLVID------GATS-TLTVLEACRFDKIKPVRDSMNEALQLW 314 (898)
Q Consensus 243 yld~lLp~L~e~Ls-ddDW~vRKaA~EaL~sLA~avge~L~P------y~~~-~I~~LE~~RfDKvKpVRD~A~eALelW 314 (898)
.....|..|...|. +.+..+-.-|+..|-++....|..|.. |++. +++.+. -+.+....|++-+++.++-|
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~-~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLIN-PKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHc-ccCCCcHHHHHHHHHHHHHH
Confidence 34466777777776 457777777899999999999977764 4454 444443 23334457999999999999
Q ss_pred HHh
Q 002638 315 KKI 317 (898)
Q Consensus 315 K~L 317 (898)
..-
T Consensus 114 ~~~ 116 (141)
T cd03565 114 ADA 116 (141)
T ss_pred HHH
Confidence 853
No 384
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.47 E-value=1e+03 Score=31.67 Aligned_cols=115 Identities=14% Similarity=0.242 Sum_probs=76.3
Q ss_pred CHHHHHHHHhhhc-----CCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 002638 76 SLPMLLNCLYESS-----NDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKL 150 (898)
Q Consensus 76 ~Lp~fLs~L~es~-----~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~ 150 (898)
.+..+|..|+... .+-.+..|-.|+..||.-+..+++.... .--+-+|=..|.|....||..|..+|-.|...
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 3666777777652 5778999999999999999999987422 11245678999999999999999999888877
Q ss_pred HhcccccCCchhHHhhHHHHHHHH-hcCCHhHHHHH-HHHHHHHHH
Q 002638 151 YLNGKEENNGTVVGLFVKPLFEAM-MEQNKGVQSGA-AMCMAKMVE 194 (898)
Q Consensus 151 lik~~~e~~~~~~~~lL~pL~eaL-~eqnk~VQegA-asALAkiIE 194 (898)
= .-.+..+....-|=.-+++.. -+-+..|.+.+ ..|+.+...
T Consensus 357 ~--~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~ 400 (1048)
T KOG2011|consen 357 D--EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS 400 (1048)
T ss_pred c--ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Confidence 2 111111122333444455544 34567777543 344444433
No 385
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=23.03 E-value=1.5e+02 Score=27.64 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=50.3
Q ss_pred chHHHHHHhhcccc-----cccccChHHHHHHHHHHHHHhh--hchhhhhHHHHHHHHHHHHHhcCCccccccHHHHHHH
Q 002638 784 DDFLLVKLMDRSGP-----VVDQLSNEVANEVLHAIGQFLL--EQNLFDICLSWIQQLVELVLENGPHVLGIPMELKKEL 856 (898)
Q Consensus 784 d~~~lv~lm~~tgp-----v~~~ls~~~~~e~l~~i~~~l~--~~~~~d~~~~w~qq~~~l~~~~g~~~~~~~~~~k~~~ 856 (898)
|+.+|.+-+.++-| ++..|+..-+..+|.+|+..+. +..=...++.|++.++ ..||+-..+.+.+.+ ..
T Consensus 2 d~~ll~~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll---~~H~~~l~~~~~~~~-~~ 77 (110)
T PF04003_consen 2 DEELLLEVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALL---KTHGSYLSSSSPELR-PV 77 (110)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHH---HHHHHHHHhcCHHHH-HH
Confidence 44555555555544 5678999999999999999886 4457888999999865 455555555433333 23
Q ss_pred HHHHHhh
Q 002638 857 LLNLHEA 863 (898)
Q Consensus 857 l~~l~ea 863 (898)
|..|+..
T Consensus 78 L~~L~~~ 84 (110)
T PF04003_consen 78 LRSLQKI 84 (110)
T ss_pred HHHHHHH
Confidence 3444433
No 386
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.77 E-value=1.1e+03 Score=26.56 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=99.3
Q ss_pred chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHhcCCHhHHHHHHHHHHHHH
Q 002638 114 TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 114 I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~eqnk~VQegAasALAkiI 193 (898)
....+..++..++..+..... ++.... .+++.+ +...++-|...|......++.++..=|..++
T Consensus 21 ~~~~~~~~L~~~l~~ls~~~~-~~~~g~----~l~~~i-----------L~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv 84 (330)
T PF11707_consen 21 LLSLVSSVLALLLKKLSSDLS-FQSYGL----ELIRSI-----------LQNHLKLLYRSLSSSKPSLTNPALRLLTAIV 84 (330)
T ss_pred hHHHHHHHHHHHHHHhccchh-HHHHHH----HHHHHH-----------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH
Confidence 444566677777777766554 332222 234444 2334677777887667777777777777777
Q ss_pred Hh-cCCC---CchhHHHHHHHHHHHhcCCc-------------hhhHHHHHHHHHHHHhcc-c-cCcccH--HHHHHHHH
Q 002638 194 EC-ASDP---PVVAFQKLCARICKLLSNQN-------------FMAKASLLPVVGSLSQVG-A-IAPQSL--EPLLQSIH 252 (898)
Q Consensus 194 E~-a~d~---~~~yL~~LlPRLlkLLks~~-------------~kaK~alL~aIgSLA~vG-a-~~~pyl--d~lLp~L~ 252 (898)
.. .+.. +..+++.=.+.|.+++.... ..+|...+..+-++...+ . .....+ ..++..++
T Consensus 85 ~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~ 164 (330)
T PF11707_consen 85 SFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALF 164 (330)
T ss_pred ccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHH
Confidence 62 2111 11223333444444443221 156778888888887544 1 111111 12377788
Q ss_pred HhhCCCCHHHHHHHHHHHHH-HHHhcc----hHHHhhHHHHHHHHHhhhcCC-----ChhhHHHHHHHHHHHHHhhcC
Q 002638 253 ECLGSTDWATRKAAADALSA-LALHSS----NLVIDGATSTLTVLEACRFDK-----IKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 253 e~LsddDW~vRKaA~EaL~s-LA~avg----e~L~Py~~~~I~~LE~~RfDK-----vKpVRD~A~eALelWK~La~~ 320 (898)
..|..|+..+=...+++|-. |..-.. .+..-|=+.++.-|-. -|+. ...|++. +-+|...++..
T Consensus 165 k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~-Ly~~~~~~~~~~~~~~---vh~fL~~lcT~ 238 (330)
T PF11707_consen 165 KGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS-LYSRDGEDEKSSVADL---VHEFLLALCTD 238 (330)
T ss_pred hcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH-HhcccCCcccchHHHH---HHHHHHHHhcC
Confidence 88888877765555555553 222111 1222222444443332 2222 2345565 78888888854
No 387
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=21.87 E-value=1.5e+03 Score=30.62 Aligned_cols=57 Identities=12% Similarity=0.274 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhchh--chhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhc
Q 002638 97 KESVRLLALVCELHSEL--TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLN 153 (898)
Q Consensus 97 KeAIlLLG~IAEg~gd~--I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik 153 (898)
+.+-..|.++++.+.+. ..-...+|+.-++-.+.|++..||..+...|..|-.....
T Consensus 518 ~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~~~ 576 (1120)
T PF14228_consen 518 RVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEERFFS 576 (1120)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 34556677888888644 2235679999999999999999999999999999877754
No 388
>PF08095 Toxin_25: Hefutoxin family; InterPro: IPR012630 This family consists of the hefutoxins that are found in the venom of the scorpion Heterometrus fulvipes (Indian black scorpion). These toxins, kappa-hefutoxin1 and kappa-hefutoxin2, exhibit no homology to any known toxins. The hefutoxins are potassium channel toxins [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP9_A.
Probab=21.29 E-value=41 Score=23.69 Aligned_cols=17 Identities=47% Similarity=0.642 Sum_probs=12.1
Q ss_pred CCCcchhhhhhccchhHH
Q 002638 699 EGPSARSVWQASKDEATL 716 (898)
Q Consensus 699 ~g~~ars~w~ask~~a~~ 716 (898)
-|+ -||-|+|-.||.|-
T Consensus 2 ~~c-yrscwk~g~deetc 18 (22)
T PF08095_consen 2 FGC-YRSCWKAGHDEETC 18 (22)
T ss_dssp --T-TTHHHHHHS-TTHH
T ss_pred cch-HHHHHHccCcHHHH
Confidence 355 69999999999874
No 389
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=21.11 E-value=1.5e+03 Score=27.23 Aligned_cols=64 Identities=14% Similarity=0.347 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCC---CCCHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhc
Q 002638 57 THQIAIEDLEKTIQTLS---QESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRLK 130 (898)
Q Consensus 57 T~k~Aa~eLD~Ia~~L~---pe~Lp~fLs~L~es~~s~k~~vRKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLk 130 (898)
..+.|.+-+-++-..++ .+.|+..|.+. .+.+..+|+.||+-|-..|.+ ..+++|.+.+.+.|.
T Consensus 40 ~k~lasq~ip~~fk~fp~la~~a~da~~d~~----ed~d~~ir~qaik~lp~fc~~------d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPSLADEAIDAQLDLC----EDDDVGIRRQAIKGLPLFCKG------DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHhhCchhhhHHHHhhhccc----cccchhhHHHHHhccchhccC------chhhhhHHHHHHHHH
Confidence 45556665555555543 12244444443 367789999999999888776 556677777777775
No 390
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.73 E-value=2.8e+02 Score=26.18 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=36.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHhHhhhhhHHHHHHH
Q 002638 515 NKGNWLAIQRQLMQLERQQAHLMNMLQDFMGGSHDSMVTLENRVRGLERVVEDM 568 (898)
Q Consensus 515 ~~~~l~~Ir~QL~qiE~qQs~l~~lLQ~Fmg~s~~~m~~Le~RV~gLE~~~dei 568 (898)
......-|++.+.+++.+...|--.||. +.-+|..|..||-+|+++
T Consensus 40 ~~~~~~~l~~~~~~l~~k~~~l~~~l~~--------Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 40 MKDIAAGLEKNLEDLNQKYEELQPYLQQ--------IDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888777774 788999999999987654
No 391
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=20.38 E-value=1.4e+03 Score=26.67 Aligned_cols=130 Identities=14% Similarity=0.199 Sum_probs=85.4
Q ss_pred hhHhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc--C--CCCCHHHHHHHHhhhcCC---------C-----Chhh
Q 002638 34 SHLAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQT--L--SQESLPMLLNCLYESSND---------P-----KPAV 95 (898)
Q Consensus 34 ~~~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~Ia~~--L--~pe~Lp~fLs~L~es~~s---------~-----k~~v 95 (898)
....+-++-+-+++||.+=.|=+.....+..|-...++ | +.+ +..+...|.+...+ . +...
T Consensus 135 ~~l~is~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~ 213 (356)
T PF03542_consen 135 GYLPISEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADL 213 (356)
T ss_pred eeeeHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHH
Confidence 34556677778888888888888999999888777764 2 343 66665555543211 1 1223
Q ss_pred HHHHHHHHHHHHHHhchhchhhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHhcccccCCchhHHhhHHHHHHHHh
Q 002638 96 KKESVRLLALVCELHSELTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMM 175 (898)
Q Consensus 96 RKeAIlLLG~IAEg~gd~I~PhLpkIL~~IlrrLkDpDs~VR~Ac~~tLG~LA~~lik~~~e~~~~~~~~lL~pL~eaL~ 175 (898)
....+..|..++..|...-...-..|+..+..+|... .-..|..++..-+..+ . ..+..+|+.++.-|.
T Consensus 214 ~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~Em---P-----~s~~k~L~~iL~kLs 282 (356)
T PF03542_consen 214 QVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEM---P-----DSMKKLLPSILLKLS 282 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHh---H-----HHHHHHHHHHHHHHH
Confidence 3346777777777776666667789999999999773 3345666666555555 1 335667777777774
Done!