Query 002638
Match_columns 898
No_of_seqs 172 out of 418
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 16:46:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002638.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1356-1360//hhsearch_pdb/002638hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 1.0 1 1 181.9 24.9 272 43-320 6-288 (1230)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 180.9 25.4 268 40-320 10-286 (852)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 175.0 27.2 268 38-313 88-385 (852)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 168.9 28.4 267 43-320 4-296 (861)
5 1qgr_A Protein (importin beta 1.0 1 1 162.8 26.7 263 44-320 2-289 (876)
6 2qk2_A LP04448P; mini spindles 1.0 1 1 160.0 17.6 202 77-288 13-219 (242)
7 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 158.1 19.4 201 84-288 21-234 (249)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 156.0 19.7 252 55-313 100-400 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 151.8 30.5 274 36-318 91-397 (861)
10 1wa5_C Importin alpha RE-expor 1.0 1 1 148.5 20.6 264 43-320 5-322 (960)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=181.89 Aligned_cols=272 Identities=15% Similarity=0.178 Sum_probs=222.9
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHH
Q ss_conf 9999999707--9925899999999999730----899977899999861129999056899999999999982101245
Q 002638 43 QKILTSLSKL--ADRDTHQIAIEDLEKTIQT----LSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTST 116 (898)
Q Consensus 43 ~rll~~L~KL--sDrDT~k~Aa~eLD~ia~~----L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P 116 (898)
+.+.++|.++ .|.+.+++|...|...... +++.....++..|.+...+.++.+|++++.+|+.+++.+++ +
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---H
T ss_conf 6999999755898785999999999999741665787567999999999986699989999999999999975879---8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q ss_conf 699999999974259996789999999999999974166--66870337766999999982-299869999999999999
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGK--EENNGTVVGLFVKPLFEAMM-EQNKGVQSGAAMCMAKMV 193 (898)
Q Consensus 117 ~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~--~e~~~~~~~~lLkPLleaL~-eqnk~VQ~gAA~ALAkII 193 (898)
+++.|++.++..|.|+++.||.+++.+++.++..+.... .......|+.+++.|++++. .++..++.+|+.+|..++
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999866983889999999999999967974444411788999999999998757884679999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Q ss_conf 8149999124899999999971298346499999999999840-1127122899999999964899-9999999999999
Q 002638 194 ECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGST-DWATRKAAADALS 271 (898)
Q Consensus 194 E~a~d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~v-ga~~~pyle~lLp~L~e~Lssd-DW~vRKaA~EaLg 271 (898)
+..+....+|++.+++.|++.|.+++..+|..++.+++.++.. +..+ ++.+|+.|.+.|... ++.+|..++++|+
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 982767788799999999998759968999999999999998568999---99999999998616775568999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999623679953989999998621198723389999999999984047
Q 002638 272 ALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 272 sLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK~I~~~ 320 (898)
.|+...|+.|.||+..++..+...-.|..+.||+.+.++++.|-...+.
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
T ss_conf 9999868989988999999999986689778999999999999997848
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=180.88 Aligned_cols=268 Identities=13% Similarity=0.106 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHC-HH
Q ss_conf 9999999999707--99258999999999997308999778999998611299990568999999999999821012-45
Q 002638 40 EMKQKILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELT-ST 116 (898)
Q Consensus 40 eLK~rll~~L~KL--sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I-~P 116 (898)
+-.+++.++|... +|.++++.|.+.|+++.. .| .+..+|..|.....+.++.+|..|..+|++.+..++..+ ..
T Consensus 10 ~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~--~p-~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 10 QGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ--YP-DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT--SH-HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--CC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 239999999998739498999999999999870--99-889999999856688986799999999999898744779999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 69999999997425999678999999999999997416666870337766999999982299869999999999999814
Q 002638 117 HVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECA 196 (898)
Q Consensus 117 ~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a 196 (898)
....|...+++.|.|+++.||..++.+++.++... . ...|+.+++.|++.+.+.+..++.+|+.||..+++..
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---~----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~ 159 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKG---E----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT---T----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC---C----CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999874998999999999999999864---8----1356899999999870999899999999999999985
Q ss_pred CCC-----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999-----91248999999999712983464999999999998401-127122899999999964899999999999999
Q 002638 197 SDP-----PVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG-AIAPQSLEPLLQSIHECLGSTDWATRKAAADAL 270 (898)
Q Consensus 197 ~d~-----~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg-a~~~pyle~lLp~L~e~LssdDW~vRKaA~EaL 270 (898)
+.. ...+++.++|.|++++++++..+|..++.+++.++... ..+.++++.+++.|+..+.+++..+|+.||++|
T Consensus 160 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 160 AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 78756343133299999999998567978999999999999986463879988999999999871799778999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999623679953989999998621198723389999999999984047
Q 002638 271 SALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 271 gsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK~I~~~ 320 (898)
+.|+...++.+.||+..++.++..+-.|+.+.||. .|+++|..++..
T Consensus 240 ~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~---~a~e~l~~l~~~ 286 (852)
T 4fdd_A 240 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVAL---EACEFWLTLAEQ 286 (852)
T ss_dssp HHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHH---HHHHHHHHHTTS
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHHCC
T ss_conf 99998577989988999999999870699689999---999999998603
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=174.98 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCH--
Q ss_conf 999999999999707992589999999999973089997789999986112999905689999999999998210124--
Q 002638 38 MVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTS-- 115 (898)
Q Consensus 38 ~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~-- 115 (898)
-..+|..++.+|.. .+...++.++..+-.++....+...+-+++.|.....+.++.+|+.++.+|+.+++..++.+.
T Consensus 88 ~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 88 TDFIKSECLNNIGD-SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 99999999998749-98999999999999999864813568999999998709998999999999999999857875634
Q ss_pred ---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf ---56999999999742599967899999999999999741666687033776699999998229986999999999999
Q 002638 116 ---THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKM 192 (898)
Q Consensus 116 ---P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkI 192 (898)
.++..+++.+++.|+|+++.||.+++++++.++....+. ....++.+++.|+..+.+.+..++..|+.||..+
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~----~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA----LMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH----HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 313329999999999856797899999999999998646387----9988999999999871799778999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHHHHHH-----------CC-
Q ss_conf 981499991248999999999712983464999999999998401---127122899999999964-----------89-
Q 002638 193 VECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQVG---AIAPQSLEPLLQSIHECL-----------GS- 257 (898)
Q Consensus 193 IE~a~d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg---a~~~pyle~lLp~L~e~L-----------ss- 257 (898)
++..++...+|++.+++-+.++++++...+|..++.++.+++... ..+.+|+..++|.|+..+ .+
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred HHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 98577989988999999999870699689999999999998603657988788898899999987578676799866984
Q ss_pred ----------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf ----------99999999999999999962367995398999999862119872338999999999
Q 002638 258 ----------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 258 ----------dDW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALel 313 (898)
.+|.+|++|+++|+.++...|+.+. +.++..+...-.|....+|+++..++..
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~---~~l~~~l~~~l~~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL---PHILPLLKELLFHHEWVVKESGILVLGA 385 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGGGH---HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 43222456401116999999999999874618789---9999999998559988999999999999
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=168.87 Aligned_cols=267 Identities=12% Similarity=0.077 Sum_probs=208.5
Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---------
Q ss_conf 9999999707---9925899999999999730899977899999861129999056899999999999982---------
Q 002638 43 QKILTSLSKL---ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELH--------- 110 (898)
Q Consensus 43 ~rll~~L~KL---sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAegh--------- 110 (898)
+++.++|..+ +|.+.++.|.+.|.++..+-.| .+..+|..+... .+.++.+|..|..+|++.+..+
T Consensus 4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~-~~~~~l~~il~~-~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFL-QFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 79999999742693979999999999999851999-999999999837-8998679999999987022575748789999
Q ss_pred --CH--HCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHH
Q ss_conf --10--12456999999999742599967899999999999999741666687033776699999998229-98699999
Q 002638 111 --SE--LTSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGA 185 (898)
Q Consensus 111 --gd--~I~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eq-nk~VQ~gA 185 (898)
+. ........|...++..|.++++.||..++.+++.++.+.... ..|+.+++.|++.+.+. ++.+..+|
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~------~~w~~ll~~L~~~l~~~~~~~~r~~a 155 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH------GAWPELMKIMVDNTGAEQPENVKRAS 155 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG------TCCHHHHHHHHHHTSTTSCHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 767662999999999999999877996379999999999999846764------55499999999987268978999999
Q ss_pred HHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHC-CCCCC--CCHHHHHHHHHHHHCC
Q ss_conf 99999999814999---9124899999999971298--346499999999999840-11271--2289999999996489
Q 002638 186 AMCMAKMVECASDP---PVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQV-GAIAP--QSLEPLLQSIHECLGS 257 (898)
Q Consensus 186 A~ALAkIIE~a~d~---~~~yL~~LlPRLlkLLks~--~fkaK~alLsaIgSLa~v-ga~~~--pyle~lLp~L~e~Lss 257 (898)
+.+|..+++..... ..++++.|++.+...+.++ +..+|.+++.+++.++.. +..+. ...+.+++.|.+.+.+
T Consensus 156 l~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 235 (861)
T 2bpt_A 156 LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA 235 (861)
T ss_dssp HHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999727843567898899999999984157999878999999999999999998706766899999999998659
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999962367995398-9999998621198723389999999999984047
Q 002638 258 TDWATRKAAADALSALALHSSNLVIDGAT-STLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 258 dDW~vRKaA~EaLgsLA~avge~L~Py~~-siI~aLE~~RfDKvKpVRDaA~eALelWK~I~~~ 320 (898)
++|.+|+.++++|+.|+...++.|.+|+. .++..+..+..|....||. .++++|..+...
T Consensus 236 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~---~a~~~l~~l~~~ 296 (861)
T 2bpt_A 236 EDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVAS---MTVEFWSTICEE 296 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHH---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHH
T ss_conf 9889999999999999999889999988999999999987377278999---999999999987
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=162.78 Aligned_cols=263 Identities=10% Similarity=0.067 Sum_probs=206.7
Q ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHH-----------
Q ss_conf 999999707--992589999999999973089997789999986112--99990568999999999999-----------
Q 002638 44 KILTSLSKL--ADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESS--NDPKPAVKKESVRLLALVCE----------- 108 (898)
Q Consensus 44 rll~~L~KL--sDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~--~s~ks~vRKeAIlLLG~iAe----------- 108 (898)
++.++|..+ +|.++++.|.+.|.++..+ ..+.|+..|.... .+.+..+|..|..+|++.+.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~----~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 689999976298989999999999998716----8046999999998578998799999999998760554347678998
Q ss_pred HHCHH-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC--CHHHHHHH
Q ss_conf 82101-2456999999999742599967899999999999999741666687033776699999998229--98699999
Q 002638 109 LHSEL-TSTHVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ--NKGVQSGA 185 (898)
Q Consensus 109 ghgd~-I~P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eq--nk~VQ~gA 185 (898)
.++.. .......|...++..|.++++.+ ..++.+++.++..... ...|+.+++.|+..+.+. ++.++.+|
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~------~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP------VNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG------GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 64406999999999999999867994788-9999999999984676------2256889999999870889879999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH-CCCCCCC--CHHHHHHHHHHHHCCCC
Q ss_conf 99999999814-9999124899999999971298--34649999999999984-0112712--28999999999648999
Q 002638 186 AMCMAKMVECA-SDPPVVAFQKLCARICKLLSNQ--NFMAKASLLPVVGSLSQ-VGAIAPQ--SLEPLLQSIHECLGSTD 259 (898)
Q Consensus 186 A~ALAkIIE~a-~d~~~~yL~~LlPRLlkLLks~--~fkaK~alLsaIgSLa~-vga~~~p--yle~lLp~L~e~LssdD 259 (898)
+.+|..+++.. ++....+++.+++.+...+.++ +..+|..++.+++.++. ++..+.. ....+++.+.+.+.+++
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 230 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 230 (876)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998745876678679999999998616799988999999999999999999988717899999999998717998
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999962367995398-9999998621198723389999999999984047
Q 002638 260 WATRKAAADALSALALHSSNLVIDGAT-STLTVLEACRFDKIKPVRDSMNEALQLWKKIAGK 320 (898)
Q Consensus 260 W~vRKaA~EaLgsLA~avge~L~Py~~-siI~aLE~~RfDKvKpVRDaA~eALelWK~I~~~ 320 (898)
+.+|..++++|+.++...++.+.||+. .++..+..+..|..+.||. .++++|..++..
T Consensus 231 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~---~al~~l~~l~~~ 289 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVAL---QGIEFWSNVCDE 289 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHH
T ss_conf 89999999999999998699999887789999999996387349999---999999999887
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=160.04 Aligned_cols=202 Identities=20% Similarity=0.215 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 78999998611299990568999999999999821012456999999999742-59996789999999999999974166
Q 002638 77 LPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSELTSTHVTKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLNGK 155 (898)
Q Consensus 77 Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd~I~P~LpkILs~IikrL-kDpDs~VR~Aa~dtIG~LA~~lik~~ 155 (898)
+..+.+.+.+...+.+|..|++++..|..++++|++.....+.+++..+.++| +|+++.||.+++.+++.|+..+ .+.
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-~~~ 91 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL-AKR 91 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-GGG
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 0017989996626387899999999999987128888877799999999998456898999999999999999998-661
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66870337766999999982299869999999999999814999912489999999997129834649999999999984
Q 002638 156 EENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPVVAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQ 235 (898)
Q Consensus 156 ~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~ 235 (898)
+ ..++..++++|++.+.++++.|+.+|+.||..+++... ++.++|.+...|++.+.++|..++..|+.++.
T Consensus 92 ~---~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 92 F---SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp G---HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 7---98999999999999768988999999999999997289------99999999998848983999999999999998
Q ss_pred -CC--CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
Q ss_conf -01--12712289999999996489999999999999999999623-6799539899
Q 002638 236 -VG--AIAPQSLEPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST 288 (898)
Q Consensus 236 -vg--a~~~pyle~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avg-e~L~Py~~si 288 (898)
.+ ..+.+|+..++|.|..+|.+.+|.+|++|+++|+.|+..+| +.|.+|++.+
T Consensus 163 ~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 163 RTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 718877668999999999998846998589999999999999984999999999852
No 7
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=158.15 Aligned_cols=201 Identities=11% Similarity=0.089 Sum_probs=175.2
Q ss_pred HHHHCCCCCHHHHHHHHHHHHH-HHHHHCHHC--HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 8611299990568999999999-999821012--456999999999742-599967899999999999999741-66668
Q 002638 84 LYESSNDPKPAVKKESVRLLAL-VCELHSELT--STHVTKIISHIVKRL-KDSDSGMKEACRDSIGSLSKLYLN-GKEEN 158 (898)
Q Consensus 84 L~es~~s~ks~vRKeAIlLLG~-iAeghgd~I--~P~LpkILs~IikrL-kDpDs~VR~Aa~dtIG~LA~~lik-~~~e~ 158 (898)
+.+...+.+|..|++++..|.. ++++|++.. ...+..++..+.+.| +|++..||.+++.+++.|+..+ + +.+
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l-~~~~f-- 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL-KTPGF-- 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-CTTTS--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CCCCC--
T ss_conf 787851687999999999999999745986566742399999999998335898999999999999999762-65454--
Q ss_pred CC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 70-33776699999998229986999999999999981499991-24899999999971298346499999999999840
Q 002638 159 NG-TVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVECASDPPV-VAFQKLCARICKLLSNQNFMAKASLLPVVGSLSQV 236 (898)
Q Consensus 159 ~~-~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~a~d~~~-~yL~~LlPRLlkLLks~~fkaK~alLsaIgSLa~v 236 (898)
. .+...++++|++.+.+..+.|+.++..||.++++.+..... +|++.++++|+..|++++.++|..++.+|++++..
T Consensus 98 -~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 98 -SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp -CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf -1878999999999987379779999999999999997301235776999999999987699839999999999999987
Q ss_pred -C---CCCCCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
Q ss_conf -1---1271228-9999999996489999999999999999999623-6799539899
Q 002638 237 -G---AIAPQSL-EPLLQSIHECLGSTDWATRKAAADALSALALHSS-NLVIDGATST 288 (898)
Q Consensus 237 -g---a~~~pyl-e~lLp~L~e~LssdDW~vRKaA~EaLgsLA~avg-e~L~Py~~si 288 (898)
+ ..+.+|+ +.++|.|..++.+.+..+|.+|+++|+.|+.++| +.|.||++.+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 6785066889879999999999866998999999999999999981978789999987
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=156.05 Aligned_cols=252 Identities=13% Similarity=0.136 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHH
Q ss_conf 258999999999997308999---------77899999861129-99905689999999999998210124569999999
Q 002638 55 RDTHQIAIEDLEKTIQTLSQE---------SLPMLLNCLYESSN-DPKPAVKKESVRLLALVCELHSELTSTHVTKIISH 124 (898)
Q Consensus 55 rDT~k~Aa~eLD~ia~~L~pd---------~Lp~lLs~L~es~~-s~ks~vRKeAIlLLG~iAeghgd~I~P~LpkILs~ 124 (898)
...+..|...|..++..++++ ..+.+++.|..... +.++.+|..++.+|+.+++.+++.+.||++.+++.
T Consensus 100 ~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~ 179 (1230)
T 1u6g_C 100 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTC 179 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999996797444441178899999999999875788467999999999999998276778879999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99742599967899999999999999741666687033776699999998229-98699999999999998149999124
Q 002638 125 IVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQ-NKGVQSGAAMCMAKMVECASDPPVVA 203 (898)
Q Consensus 125 IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eq-nk~VQ~gAA~ALAkIIE~a~d~~~~y 203 (898)
++..|.|+++.||.+++.+++.++...-+ ..++.+++.|+..|... +..+..+++.||..+++..+....+|
T Consensus 180 l~~~L~~~~~~vR~~a~~al~~l~~~~~~-------~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 252 (1230)
T 1u6g_C 180 LLPQLTSPRLAVRKRTIIALGHLVMSCGN-------IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY 252 (1230)
T ss_dssp HGGGGGCSSHHHHHHHHHHHHHHTTTC-----------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987599689999999999999985689-------99999999999986167755689999999999999868989988
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHCC-------------------------
Q ss_conf 899999999971298346499999999999840-112712289999999996489-------------------------
Q 002638 204 FQKLCARICKLLSNQNFMAKASLLPVVGSLSQV-GAIAPQSLEPLLQSIHECLGS------------------------- 257 (898)
Q Consensus 204 L~~LlPRLlkLLks~~fkaK~alLsaIgSLa~v-ga~~~pyle~lLp~L~e~Lss------------------------- 257 (898)
++.++|-++..+++++..+|..++.+++.++.. +..+.+|++.+++.++..+..
T Consensus 253 l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~ 332 (1230)
T 1u6g_C 253 LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 332 (1230)
T ss_dssp CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99999999998668977899999999999999784877776899999999982789988876441101122334465301
Q ss_pred ------------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf ------------99999999999999999962367995398999999862119872338999999999
Q 002638 258 ------------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQL 313 (898)
Q Consensus 258 ------------dDW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALel 313 (898)
..|.+|++|+++|..++...++.|.+|...++..+..+-.|....||..+..++..
T Consensus 333 ~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 333 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 10013666455567799999999999999746667999999998999987179865799999999999
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=151.81 Aligned_cols=274 Identities=16% Similarity=0.174 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 769999999999997079925899999999999730899-97789999986112999-9056899999999999982101
Q 002638 36 LAMVEMKQKILTSLSKLADRDTHQIAIEDLEKTIQTLSQ-ESLPMLLNCLYESSNDP-KPAVKKESVRLLALVCELHSEL 113 (898)
Q Consensus 36 ~~~~eLK~rll~~L~KLsDrDT~k~Aa~eLD~ia~~L~p-d~Lp~lLs~L~es~~s~-ks~vRKeAIlLLG~iAeghgd~ 113 (898)
.....+|..++..|.. .+...++.++..|..++....| ...+.+++.|.+...+. ++.+|..++.+|+.+++.....
T Consensus 91 ~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~ 169 (861)
T 2bpt_A 91 EAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ 169 (861)
T ss_dssp HHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9999999999998779-963799999999999998467645549999999998726897899999999999999727843
Q ss_pred ---CHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf ---2456999999999742599--96789999999999999974166668703377669999999822998699999999
Q 002638 114 ---TSTHVTKIISHIVKRLKDS--DSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMC 188 (898)
Q Consensus 114 ---I~P~LpkILs~IikrLkDp--Ds~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~A 188 (898)
+.++++.|++.+...|.|+ ++.||.+++.+++.+..++-.. .. ....+..+++.|.+.+.+.+..++..|+.|
T Consensus 170 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~-~~-~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 170 SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-ME-REGERNYLMQVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-HT-SHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 5678988999999999841579998789999999999999999987-06-766899999999998659988999999999
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC------------------CCCCCCHHHHHH
Q ss_conf 99999814999912489-99999999712983464999999999998401------------------127122899999
Q 002638 189 MAKMVECASDPPVVAFQ-KLCARICKLLSNQNFMAKASLLPVVGSLSQVG------------------AIAPQSLEPLLQ 249 (898)
Q Consensus 189 LAkIIE~a~d~~~~yL~-~LlPRLlkLLks~~fkaK~alLsaIgSLa~vg------------------a~~~pyle~lLp 249 (898)
|..+++..++...+++. .+++-+...+.+.+..++..++.++..++... ....+++..++|
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 327 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVP 327 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998899999889999999999873772789999999999999878864333210357732569999999988999
Q ss_pred HHHHHHCC-------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99996489-------9999999999999999996236799539899999986211987233899999999999840
Q 002638 250 SIHECLGS-------TDWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRFDKIKPVRDSMNEALQLWKKIA 318 (898)
Q Consensus 250 ~L~e~Lss-------dDW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE~~RfDKvKpVRDaA~eALelWK~I~ 318 (898)
.|+..+.. ++|.+|++++++|..++...++.+ ...++..+...-.|....+|+++.. .+..+.
T Consensus 328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~---~l~~i~ 397 (861)
T 2bpt_A 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI---LEPVLEFVEQNITADNWRNREAAVM---AFGSIM 397 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG---HHHHHHHHHHHTTCSSHHHHHHHHH---HHHHTS
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHCCCCCHHHHHHHHH---HHHHHH
T ss_conf 999998706653012468689999999999998740868---9999999998757997269999999---999998
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=148.47 Aligned_cols=264 Identities=8% Similarity=0.045 Sum_probs=184.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCH------HC-H
Q ss_conf 9999999707992589999999999973089997789999986112999905689999999999998210------12-4
Q 002638 43 QKILTSLSKLADRDTHQIAIEDLEKTIQTLSQESLPMLLNCLYESSNDPKPAVKKESVRLLALVCELHSE------LT-S 115 (898)
Q Consensus 43 ~rll~~L~KLsDrDT~k~Aa~eLD~ia~~L~pd~Lp~lLs~L~es~~s~ks~vRKeAIlLLG~iAeghgd------~I-~ 115 (898)
+++.++|...-+.|....|.+.|.++-. .| .+..+|..+... .+.+..+|..|...|++.+..++. .+ .
T Consensus 5 ~~l~~~L~~~~spd~~~rAe~~L~~~~~--~p-~~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~ 80 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKTSERNLRQLET--QD-GFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 (960)
T ss_dssp HHHHHHHHHTTSGGGHHHHHHHHHHHHT--ST-THHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHC--CC-CHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 9999999976599878999999998555--99-889999999865-7988889999999999999854887656788998
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 56999999999742599967899999999999999741666687033776699999998229986999999999999981
Q 002638 116 THVTKIISHIVKRLKDSDSGMKEACRDSIGSLSKLYLNGKEENNGTVVGLFVKPLFEAMMEQNKGVQSGAAMCMAKMVEC 195 (898)
Q Consensus 116 P~LpkILs~IikrLkDpDs~VR~Aa~dtIG~LA~~lik~~~e~~~~~~~~lLkPLleaL~eqnk~VQ~gAA~ALAkIIE~ 195 (898)
.....|...++..|.++.+.||...+.+|+.++.+-. . ..||.+++-|++.+..++...+.++..+|..+++.
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~---p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~ 153 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF---P----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKR 153 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS---T----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC---C----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999980879999999999999998617---1----30157999999984789889999999999999999
Q ss_pred CCCCCC---------HHHHHHHHHHHHHH-------CCCC---HHHH------HHHHHHHHHHHHCC--CCCCCCHHHHH
Q ss_conf 499991---------24899999999971-------2983---4649------99999999998401--12712289999
Q 002638 196 ASDPPV---------VAFQKLCARICKLL-------SNQN---FMAK------ASLLPVVGSLSQVG--AIAPQSLEPLL 248 (898)
Q Consensus 196 a~d~~~---------~yL~~LlPRLlkLL-------ks~~---fkaK------~alLsaIgSLa~vg--a~~~pyle~lL 248 (898)
.+.... ..+..+.|+++.++ ..+. ...+ ..++.++.++.... ..+...+...+
T Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~ 233 (960)
T 1wa5_C 154 WRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGM 233 (960)
T ss_dssp GTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 88761484778999999999899999999999999873579879999999999999999999862565599999899999
Q ss_pred HHHHHHHCC-----------C----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHH
Q ss_conf 999996489-----------9----999999999999999996236799539899999986211-----98723389999
Q 002638 249 QSIHECLGS-----------T----DWATRKAAADALSALALHSSNLVIDGATSTLTVLEACRF-----DKIKPVRDSMN 308 (898)
Q Consensus 249 p~L~e~Lss-----------d----DW~vRKaA~EaLgsLA~avge~L~Py~~siI~aLE~~Rf-----DKvKpVRDaA~ 308 (898)
+.+..++.. . .|.+||.+|++|..++...++.|.||+..++..+-..-. ...+ +++.
T Consensus 234 ~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~ 310 (960)
T 1wa5_C 234 GIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD---ILVS 310 (960)
T ss_dssp HHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH---HHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHH
T ss_conf 9999997689985557855331327999999999999999999899999999999999999998437776728---9999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999984047
Q 002638 309 EALQLWKKIAGK 320 (898)
Q Consensus 309 eALelWK~I~~~ 320 (898)
.+++||+.+...
T Consensus 311 ~al~fl~~~~~~ 322 (960)
T 1wa5_C 311 KSLSFLTAVTRI 322 (960)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999686
Done!