Query 002640
Match_columns 897
No_of_seqs 140 out of 145
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 17:45:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002640.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1356-1360//hhsearch_pdb/002640hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj7_A Hypothetical protein (R 1.0 1 1 86.4 5.1 55 22-76 37-95 (104)
2 2dhy_A CUE domain-containing p 1.0 1 1 45.0 6.0 48 16-63 10-58 (67)
3 1wgl_A TOLL-interacting protei 1.0 1 1 44.4 5.2 45 19-63 4-49 (59)
4 1vg5_A RSGI RUH-014, rhomboid 1.0 1 1 43.1 5.6 45 18-63 23-67 (73)
5 1otr_A Protein CUE2; protein-p 1.0 1 1 42.0 4.0 41 23-63 3-44 (49)
6 2cp9_A EF-TS, EF-TSMT, elongat 1.0 1 1 41.7 4.9 43 17-62 5-47 (64)
7 1ify_A HHR23A, UV excision rep 1.0 1 1 40.8 4.0 41 22-63 6-46 (49)
8 2knz_A Ubiquilin-4; cytoplasm, 1.0 1 1 40.5 4.2 41 22-63 9-50 (53)
9 1wr1_B Ubiquitin-like protein 1.0 1 1 39.6 4.0 41 22-63 15-56 (58)
10 2dah_A Ubiquilin-3; UBA domain 1.0 1 1 38.3 4.3 41 22-63 7-48 (54)
No 1
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=86.44 Aligned_cols=55 Identities=29% Similarity=0.386 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC----CCCCCCCCCCCC
Q ss_conf 5149988853301488757899997513999778998762599----744001110001
Q 002640 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRDKR 76 (897)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~~----~f~EVkkKr~kk 76 (897)
.+++++|+.|+|+++++++++..||.+||+|+++||++|+++. .|++|+|||.+.
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~~~~kKk~~~ 95 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVS 95 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCCSS
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 12789999999862989999999999949989999999982898678245522444456
No 2
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=44.98 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 85457951499888533014-8875789999751399977899876259
Q 002640 16 GISSIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 16 ~~~~ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~~ 63 (897)
.+..--..+++.|..||||| +...+.|-.+|+.|++|++.||+.||+.
T Consensus 10 ~~~~~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 10 ARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 3330378789999999998788999999999999499789999999826
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=1.00 E-value=1 Score=44.39 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 57951499888533014-8875789999751399977899876259
Q 002640 19 SIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 19 ~ip~~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~~ 63 (897)
..|.-+++.|..|+|+| +..++-|-.+|+.|++|++.||+.||+.
T Consensus 4 ~~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 4 GSSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp CSSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 8888789999999998799999999999999499789999999817
No 4
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=43.09 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 4579514998885330148875789999751399977899876259
Q 002640 18 SSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 18 ~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~ 63 (897)
......++++|++|+|| +++++++..||+.|++|++.|++.|+++
T Consensus 23 ~~~~~~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 23 QGRVAASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CCCSCCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 66784249999999983-9999999999999389999999999977
No 5
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=1.00 E-value=1 Score=41.96 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHCC-CCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 1499888533014-8875789999751399977899876259
Q 002640 23 GSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 23 ~~rk~V~~ikEi~-~~seedi~~aL~ecn~D~n~Av~rLl~~ 63 (897)
+.+++|+.|.||| ..+.++|-.+|..|+||.++||+-||+.
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 258899999987899989999999999299899999999835
No 6
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=1.00 E-value=1 Score=41.67 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 5457951499888533014887578999975139997789987625
Q 002640 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (897)
Q Consensus 17 ~~~ip~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~ 62 (897)
...|+ .+.|+.|+|.++....||-.||.|||||+++||..|-+
T Consensus 5 ~~~it---~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 5 SSGSS---KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp SSCCC---CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCC---HHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 56579---99999999996988999999999949999999999999
No 7
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=40.85 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 514998885330148875789999751399977899876259
Q 002640 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 22 ~~~rk~V~~ikEi~~~seedi~~aL~ecn~D~n~Av~rLl~~ 63 (897)
...+++|++|.|| +++++++..||+.|++|++.|++.|+++
T Consensus 6 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHC-CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 5479999999992-9999999999999399999999999867
No 8
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=40.50 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 5149988853301488-75789999751399977899876259
Q 002640 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~Av~rLl~~ 63 (897)
..++++|++|+|| +. .++.+..||+.|++|++.||+.|++.
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 4799999999981-89989999999999199999999999976
No 9
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=39.56 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 5149988853301488-75789999751399977899876259
Q 002640 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 22 ~~~rk~V~~ikEi~~~-seedi~~aL~ecn~D~n~Av~rLl~~ 63 (897)
..++++|++|+|| +. .++.+..||+.|++|++.||+.|+.+
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 7899999999981-89969999999999099999999999828
No 10
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=1.00 E-value=1 Score=38.30 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHCCCCCHHH-HHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 51499888533014887578-9999751399977899876259
Q 002640 22 AGSRKIVQSLKEIVNCPESE-IYAMLKECNMDPNEAVNRLLSQ 63 (897)
Q Consensus 22 ~~~rk~V~~ikEi~~~seed-i~~aL~ecn~D~n~Av~rLl~~ 63 (897)
..++++|++|++| +.++++ +..||+.|++|++.||++|+..
T Consensus 7 ~~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 7 GHFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CSSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 6679999999985-99958999999999199999999999847
Done!