BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002641
(897 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus
GN=CERBERUS PE=2 SV=2
Length = 1485
Score = 583 bits (1503), Expect = e-165, Method: Compositional matrix adjust.
Identities = 343/766 (44%), Positives = 467/766 (60%), Gaps = 48/766 (6%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PPKDFVCPIT IF DPVTLETGQTYER+AIQEW+ GN++CPITRQ LS++ LPKTNYV
Sbjct: 511 PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYV 570
Query: 220 LKRLIASWQEQNPG-GLDLSH-SEPMSKSIVPS--------------------------- 250
LKRLI SW+EQNP + S+ + P S PS
Sbjct: 571 LKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQ 630
Query: 251 -----------NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA 299
SP SV+SQA ++ + LK I+SLC SE L E E AVL+I R ++
Sbjct: 631 RSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDS 690
Query: 300 SMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV 359
I LSKP +ING VEIL S + VL +I++LSEL D SV TL V+SD
Sbjct: 691 KTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDF 750
Query: 360 ERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE--DFLKMCLKPKSV 417
+ + L K GL EA +LI LRP L +++ SL+ VI+ K E D ++ + PK
Sbjct: 751 DCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDA 810
Query: 418 SVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDG 477
++ +L Q + +E S A++++S+ +++ LE E R + V +LL CMQ +
Sbjct: 811 AIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLER--MEGRRSVVSVLLCCMQAEK 868
Query: 478 KCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS 537
C+N IA++ EL+PV+E F + +D R V FLSELV+LNRRT QILH IKDEG +S
Sbjct: 869 SCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQILHTIKDEGAFS 928
Query: 538 SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQ 597
+MHT LVYLQ A + VA LLLQLDLLAEPRKMSIYREEA++TLI L D+ Q
Sbjct: 929 TMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQ 988
Query: 598 LAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEK 657
+ A ++ L G ++SGKS T A LLK AG + Y L + EQ+G + +T E+EK
Sbjct: 989 MKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEK 1048
Query: 658 AA-DDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
A + W++++A VL +H+ G +F+ALEE L S ++ +C ATWL +ML LPDTG+
Sbjct: 1049 NALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLYTLPDTGV 1108
Query: 717 FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
AR SLL+ I+ +S+ +++++ L+ LAL +F DP + ++ K I + LR L+
Sbjct: 1109 RDVARKSLLEEVINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLK 1168
Query: 777 KYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTI 835
KYS +A +++KV+ N + W+ +E+V +D S NG+VLS+ ++ SGH+DGTI
Sbjct: 1169 KYSVVAVDIMKVILNLKSVDVTELWSCKEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTI 1228
Query: 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
KVW R I +IQ+ EHTKAVT L SG+ LYSGSLDKT RV
Sbjct: 1229 KVWDARKRIPRVIQETHEHTKAVTSLC--SSGDRLYSGSLDKTIRV 1272
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 14 LLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSG------LIIVTPPS 67
L+ M Q +L++LE+ Y E LDEN +++A Y+ + + + S L I PP
Sbjct: 213 LVLTMRPHQLEKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSSSSKKAVPMLPIAEPPM 272
Query: 68 VVLRKIEKV 76
L ++ +
Sbjct: 273 TPLHELSRT 281
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula
GN=LIN PE=2 SV=1
Length = 1488
Score = 578 bits (1491), Expect = e-164, Method: Compositional matrix adjust.
Identities = 342/767 (44%), Positives = 470/767 (61%), Gaps = 49/767 (6%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PPKDFVCPIT IF DPVTLETGQTYER+AIQEW+ GN++CPITRQ LS+ LPKTNYV
Sbjct: 513 PPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYV 572
Query: 220 LKRLIASWQEQNPG-GLDLSHSE-PMSKSIVPSN-------------------------- 251
LKRLI SW+EQNP + S+S P S PS
Sbjct: 573 LKRLIVSWKEQNPELAQEFSNSNTPRGSSCSPSAKDITMVSSIQRTTDSPSQKYKDDYIR 632
Query: 252 -------------SPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLE 298
SP SV+SQA ++ I L ITSLC SE L + E AVL+I R W +
Sbjct: 633 QRNNRFTRVSVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEQAVLEIARLWKD 692
Query: 299 ASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESD 358
+ + I LSKP V++G VEIL S++ VL +I++LSEL D+ V TL V+SD
Sbjct: 693 SKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFSDERVGETLNSVDSD 752
Query: 359 VERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDF--LKMCLKPKS 416
+ + L K GL EA +LI LRP L E +++ SL+ VI+ K ED ++ + PK+
Sbjct: 753 FDCLAMLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKSEDIDDFQLAIDPKA 812
Query: 417 VSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQED 476
++ +L Q++ +E S A++++S+ +++ L+ E R + ILL CMQ +
Sbjct: 813 AAIAILEQILIGGDEYNRSVNASSVISANGIPAIVKYLDK--TEGRRPVISILLCCMQAE 870
Query: 477 GKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTY 536
C++SIA++ EL+PV+E F A +D R V FLSELV+LNRRT + Q L IIKDEG +
Sbjct: 871 KSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNQTLQIIKDEGAF 930
Query: 537 SSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAA 596
S+MHT LVYLQ A + VA LLLQLDLLAEPRKMSIYREEA++TLI L D+
Sbjct: 931 STMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNN 990
Query: 597 QLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEE 656
Q+ A ++ L G T+SGKS T A LLK AG + Y L + EQ+G+ + +T E+E
Sbjct: 991 QMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDFMETMEDE 1050
Query: 657 K-AADDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTG 715
K A W++++A VL +H+ G +F+ALEE L S ++ +C ATWL +ML LPDTG
Sbjct: 1051 KNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTG 1110
Query: 716 IFGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLREL 775
+ AR SLL+ ++ +S+ +++++ L+ LAL SF DP + ++ K I + LR+L
Sbjct: 1111 VRDVARKSLLEALMNVLQSSKNLEEKILASLALKSFISDPTVHEVLRVYAKSIYRILRKL 1170
Query: 776 RKYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGT 834
+KYS +A +++K L N + + W+ +E+V +D S NG+VLS+ ++ SGH+DGT
Sbjct: 1171 KKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGT 1230
Query: 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
IKVW R I +IQ+ REH KAVT L S + LYS SLDKT RV
Sbjct: 1231 IKVWDARKRIPRVIQETREHKKAVTSLC--SSVDKLYSSSLDKTIRV 1275
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 14 LLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSG------LIIVTPPS 67
L+ M +Q +L++LE+ Y E LDEN R++A Y+ + + S L I PP
Sbjct: 213 LVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNPDSTSSKKVVPMLPIAEPPM 272
Query: 68 VVLRKIEK 75
L ++ +
Sbjct: 273 TPLHELSR 280
>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN
PE=1 SV=1
Length = 1485
Score = 556 bits (1434), Expect = e-157, Method: Compositional matrix adjust.
Identities = 338/766 (44%), Positives = 456/766 (59%), Gaps = 48/766 (6%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PPKDFVCPIT IF DPVTLETGQTYER+AIQEW+ GN++CPITRQ LS++ LPKTNYV
Sbjct: 511 PPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASILPKTNYV 570
Query: 220 LKRLIASWQEQNPG-GLDLSH-SEPMSKSIVPS--------------------------- 250
LKRLI SW+EQNP + S+ + P S PS
Sbjct: 571 LKRLITSWKEQNPELAQEFSNVNTPRGSSCSPSAKDIPMLSTRQRTTDSPNHKNKDYARQ 630
Query: 251 -----------NSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEA 299
SP SV+SQA ++ + LK I+SLC SE L E E AVL+I R ++
Sbjct: 631 RSNRFMPAAITTSPTSVLSQAAVETIVNSLKPYISSLCTSENLPECEEAVLKIARLLKDS 690
Query: 300 SMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDV 359
I LSKP +ING VEIL S + VL +I++LSEL D SV TL V+SD
Sbjct: 691 KTNPQIHSYLSKPTIINGLVEILSASRNREVLRTSIYILSELIFTDDSVAETLNSVDSDF 750
Query: 360 ERIVALFKKGLLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEE--DFLKMCLKPKSV 417
+ + L K GL EA +LI LRP L +++ SL+ VI+ K E D ++ + PK
Sbjct: 751 DCLATLLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVDVIQNKNEELDDFQLVIDPKDA 810
Query: 418 SVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDG 477
++ +L Q + +E S A++++S+ +++ LE E R + V +LL CMQ +
Sbjct: 811 AIAILEQTLMGGDEYSRSLNASSVISANGIPTLVKYLER--MEGRRSVVSVLLCCMQAEK 868
Query: 478 KCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYS 537
C+N IA++ EL+PV+E F + +D R V FLSELV+LNRRT Q+LH IKDEG +S
Sbjct: 869 SCKNLIANRIELSPVLELFHSGNDSVRGTCVEFLSELVQLNRRTSCNQLLHTIKDEGAFS 928
Query: 538 SMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQ 597
+MHT LVYLQ A + VA LLLQLDLLAEPRKMSIYREEA++TLI L D+ Q
Sbjct: 929 TMHTFLVYLQMAPMEHQLAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNTQ 988
Query: 598 LAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEK 657
+ A ++ L G ++SGKS T A LLK AG + Y L + EQ+G + +T E+EK
Sbjct: 989 MKALDALLFLIGHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEK 1048
Query: 658 AA-DDWERKMALVLVSHDFGLLFEALEEGLNSRFAELYSACFESATWLIYMLNFLPDTGI 716
A + W++++A VL +H+ G +F+ALEE L S ++ +C ATWL ML LPDTG+
Sbjct: 1049 NALNSWQKRIASVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTRMLYTLPDTGV 1108
Query: 717 FGAARVSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDINIHMKDIMKGLRELR 776
AR SLL+ I S+ ++D L L+L F DP + ++ K I + LR+L+
Sbjct: 1109 RDVARKSLLEEVIKVLHSSKSLEDMILVTLSLYPFISDPTVHEVLRVYAKSIYRILRKLK 1168
Query: 777 KYSPLAFEMVKVLSNGHD-SSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTI 835
KYS +A +++K L N + + W+ +E+V +D S NG+VLS+ ++ SG DGT
Sbjct: 1169 KYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGLMDGTS 1228
Query: 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881
KV R I +IQ+ EHTKAVT L SG+ LYS SLDKT RV
Sbjct: 1229 KVCDARKRIPRVIQETHEHTKAVTSLC--SSGDRLYSASLDKTIRV 1272
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 14 LLSKMSGSQASELKELERNYEELLDENCRVFASYFKQVLENSNDSG------LIIVTPPS 67
L+ M Q +L++LE+ Y E LDEN +++A Y+ + + + S L I PP
Sbjct: 213 LVLTMRPHQLEKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSSSSKKAVPMLPIAEPPM 272
Query: 68 VVLRKIEKV 76
L ++ +
Sbjct: 273 TPLHELSRT 281
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P +F CPI+ + DPV + TGQTYER I++WI G+ +CP T+QK+S++ L NY
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
VL+ LI+ W E N G+ EP +S P N P S +A ID +++L
Sbjct: 331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P +F CPI+ + DPV + TGQTYER I++WI G+ +CP T+QK+S++ L NY
Sbjct: 272 TIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL-TPNY 330
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVIS---QATIDGTITEL 269
VL+ LI+ W E N G+ EP +S P N P S +A ID +++L
Sbjct: 331 VLRSLISQWCETN--GM-----EPPKRSTQP-NKPTPACSSSERANIDALLSKL 376
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P DF CPI+ + DPV + +GQTYER I++WIE G+S+CP T+Q L+ST L NYVL
Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTL-TPNYVL 315
Query: 221 KRLIASWQEQN 231
+ LIA W E N
Sbjct: 316 RSLIAQWCEAN 326
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 142 DHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSC 201
D ++ + D K T P DF+CP++ + DPV + TGQTYER IQ WI+ GN +C
Sbjct: 223 DKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTC 282
Query: 202 PITRQKLSSTKLPKTNYVLKRLIASW-QEQN---PGG 234
P T+QKL + L NYVL+ LI+ W E N P G
Sbjct: 283 PKTQQKLENFTLTP-NYVLRSLISRWCAEHNIEQPAG 318
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 23/219 (10%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P+DF+CPI+ + DP + TGQTYER IQ WI+ GN SCP T+QKL + L NY
Sbjct: 242 TIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTL-TPNY 300
Query: 219 VLKRLIASWQEQN----PGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAIT 274
VL+ LI+ W ++ PGG + + NS S + G ++ ++ +
Sbjct: 301 VLRSLISQWCTKHNIEQPGGY------------MNGRTKNSDGSFRDLSGDMSAIRALVC 348
Query: 275 SLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEAT 334
L S+ + + AV +I + D +I++++ I V++L + D E
Sbjct: 349 KLS-SQSIEDRRTAVSEIRSL---SKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENA 404
Query: 335 IFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEA 373
+ + L + + L + V IV + + G +EA
Sbjct: 405 VTCILNLSIYEHN--KELIMLAGAVTSIVLVLRAGSMEA 441
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 33/219 (15%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P +F CPI+ + DPV + +GQTYER IQ+W++ G+ +CP T+Q LS T L N+VL
Sbjct: 229 PDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSL-TPNFVL 287
Query: 221 KRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSE 280
K LI+ W E N G++L P N NS +A ++ HA M+
Sbjct: 288 KSLISQWCEAN--GIEL-----------PKNKQNSRDKKA---AKSSDYDHAGLVSLMNR 331
Query: 281 IL----NESEMAVLQIERCWLEASMELDIQIMLSKPAVINGFVEILFNSVDPRVLEATIF 336
+ +E A +I L A ++ +I +++ I V +L +S DPR E +
Sbjct: 332 LRSGNQDEQRAAAGEIR---LLAKRNVNNRICIAEAGAIPLLVNLLSSS-DPRTQEHAVT 387
Query: 337 LLSELG--SRDKSVIHTLTRVESD-VERIVALFKKGLLE 372
L L +K+ I V+S + +IV + K G +E
Sbjct: 388 ALLNLSIHENNKASI-----VDSHAIPKIVEVLKTGSME 421
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 23/208 (11%)
Query: 142 DHLIMADADNPPGIG-----KH-TP--PKDFVCPITTHIFDDPVTLETGQTYERRAIQEW 193
D + M +D P G +H +P P+ F CPI+ + DPV + TGQTYER +IQ+W
Sbjct: 222 DFVTMESSDPDPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKW 281
Query: 194 IERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSP 253
++ G+ +CP +++ L L NYVLK LIA W E N G++L ++ ++ S
Sbjct: 282 LDAGHKTCPKSQETLLHAGL-TPNYVLKSLIALWCESN--GIELPQNQGSCRTTKIGGSS 338
Query: 254 NSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPA 313
+S + + + +L + T E + A R L A +D ++ +++
Sbjct: 339 SSDCDRTFVLSLLEKLANGTT---------EQQRAAAGELR--LLAKRNVDNRVCIAEAG 387
Query: 314 VINGFVEILFNSVDPRVLEATIFLLSEL 341
I VE+L +S DPR E ++ L L
Sbjct: 388 AIPLLVELL-SSPDPRTQEHSVTALLNL 414
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 12/104 (11%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP++ CPI+ + DPV + +GQTYER I++W G++SCP T+Q+L L NY
Sbjct: 275 PPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSL-TPNYC 333
Query: 220 LKRLIASWQEQN--------PGGLDLSHSEPMSKSIVPSNSPNS 255
+K LIASW EQN P LDL++ ++ S SPNS
Sbjct: 334 VKGLIASWCEQNGITVPTGPPESLDLNY---WRLAMSDSESPNS 374
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP++F CPI+ + DPV + +GQTYER I++W+E G+ +CP T++ L+S + NYV
Sbjct: 256 PPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIM-TPNYV 314
Query: 220 LKRLIASWQEQN 231
L+ LIA W E N
Sbjct: 315 LRSLIAQWCESN 326
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P +F+CPIT I DPV + TGQTYE+ +IQ+W + G+ +CP TRQ+L L N+ L
Sbjct: 291 PHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLA-PNFAL 349
Query: 221 KRLIASWQEQN 231
K LI W E+N
Sbjct: 350 KNLIMQWCEKN 360
>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45
PE=1 SV=1
Length = 768
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 9/88 (10%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP++ CPI+ + DPV + +GQTYER I++W G+++CP T Q+LS L NY
Sbjct: 279 PPEELRCPISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTHQQLSHLCL-TPNYC 337
Query: 220 LKRLIASWQEQN--------PGGLDLSH 239
+K LI+SW EQN P LDL++
Sbjct: 338 VKALISSWCEQNGVQVPDGPPESLDLNY 365
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 8/108 (7%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYV 219
P F CPI+ + DPVT+ TGQTY+R +I WI GN++CP+TR LS T +P N+
Sbjct: 15 PYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLIP--NHT 72
Query: 220 LKRLIASWQEQN-PGGLDLSHSEPMSKSIVPSNSPNSVISQAT-IDGT 265
L+RLI W N G++ P K S S++SQA+ I GT
Sbjct: 73 LRRLIQEWCVANRSNGVE---RIPTPKQPADPISVRSLLSQASAITGT 117
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T PKDFVCPI+ + DPV + TGQTY+R +I WIE G+ +CP T Q L +++ N
Sbjct: 304 TVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVP-NR 362
Query: 219 VLKRLIASW 227
LK LI W
Sbjct: 363 ALKNLIVQW 371
>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7
PE=2 SV=1
Length = 782
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP++ CPI+ + DPV + +GQTYER I++W G+++CP T+Q+L L N V
Sbjct: 272 PPEELRCPISLQLMCDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQQLPHISLTPNNCV 331
Query: 220 LKRLIASWQEQNPGGLDLSHSEPMSKSI 247
K LIASW EQN G + P S+ +
Sbjct: 332 -KGLIASWCEQN--GTQIPSGPPESQDL 356
>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2
PE=2 SV=1
Length = 707
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P DF C ++ + DPV + +GQT+ER IQ+WI+ G CP TRQ LS T L N+++
Sbjct: 241 PSDFRCSLSLELMTDPVIVASGQTFERVFIQKWIDMGLMVCPKTRQALSHTTL-TPNFIV 299
Query: 221 KRLIASWQEQN----PGGLDLSH-SEP---MSKSIVPSNSPN 254
+ +ASW E N P L+L H SEP + +S+ S+S N
Sbjct: 300 RAFLASWCETNNVYPPDPLELIHSSEPFPLLVESVRASSSEN 341
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P DF CPI+ I DPV L++G T++R +IQ+WI+ GN +CPIT+ LS T N+ L
Sbjct: 6 PNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHAL 65
Query: 221 KRLI-----ASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTITE 268
+ LI S +E + HS S++++ ++++SQ++ + + E
Sbjct: 66 RSLILNFAHVSLKESSRPRTQQEHSHSQSQALI-----STLVSQSSSNASKLE 113
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4
PE=1 SV=3
Length = 826
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKR 222
DF CP++ + DPV + +GQTYE+ I+ WI+ G CP TRQ L+ T L NY +K
Sbjct: 233 DFFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDLGLKVCPKTRQTLTHTTL-IPNYTVKA 291
Query: 223 LIASWQEQN 231
LIA+W E N
Sbjct: 292 LIANWCETN 300
>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16
PE=2 SV=1
Length = 674
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 126 IRKQKQPIFVESSCSPD---HLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTLETG 182
+R K ++ S+ +PD H ++DA+ P DF CPIT + DPV + TG
Sbjct: 246 VRYSKCVLYGPSTPAPDFRRHQSLSDANIP---------ADFRCPITLELMRDPVVVATG 296
Query: 183 QTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227
QTY+R +I WI+ G+++CP T Q L T L N LK LI W
Sbjct: 297 QTYDRESIDLWIQSGHNTCPKTGQVLKHTSL-VPNRALKNLIVLW 340
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P+ F C ++ + DPV + +G T+ER IQ+W + GN SCPI+++KL L K N
Sbjct: 218 TLPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTL-KPNV 276
Query: 219 VLKRLIASWQEQNPGGLDLSHSEPMSKSIVPSNSPNSVISQATIDGTI 266
LK I+ W +N GLD+ +P K + SNS + +S A+ ++
Sbjct: 277 ELKSQISEWCAKN--GLDV--QDPARKHVKASNSIDFSVSIASFGSSL 320
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 156 GKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPK 215
G PP F CP++T + DPV + +GQT++R +I++W++ G + CP TRQ L+ +L
Sbjct: 235 GISIPPY-FRCPLSTELMLDPVIVASGQTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIP 293
Query: 216 TNYVLKRLIASWQEQN 231
NY +K +IASW E N
Sbjct: 294 -NYTVKAMIASWLEAN 308
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 9/109 (8%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSS-TKLPKTNY 218
P F CPI+ + DPVT+ TGQTY+R +I+ W+ G N++CP+TR LS T +P N+
Sbjct: 15 PYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIP--NH 72
Query: 219 VLKRLIASWQEQN-PGGLDLSHSEPMSKSIVPSNSPNSVISQAT-IDGT 265
L+RLI W N G++ P K S +++SQA+ I GT
Sbjct: 73 TLRRLIQEWCVANRSNGVE---RIPTPKQPADPTSVRALLSQASAITGT 118
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
PK+F CPI+ + DPV TGQTY+R +I +WIE G+S+CP + Q L+ +L N L
Sbjct: 298 PKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRL-VPNRAL 356
Query: 221 KRLIASW 227
+ LI+ W
Sbjct: 357 RSLISQW 363
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana
GN=PUB42 PE=2 SV=1
Length = 1033
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 6/76 (7%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER-GNS---SCPITRQKLSSTKLPK 215
P + F+CP+T I +DPVT ETG T ER+A+ EW + GNS +CP+T QKL +T+L
Sbjct: 246 PYQAFICPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNSDEINCPVTGQKL-TTEL-S 303
Query: 216 TNYVLKRLIASWQEQN 231
N VLK +I W+ +N
Sbjct: 304 ANVVLKTIIQEWKVRN 319
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P++F CP++ + DPV L +GQTY++ IQ+W+ GN +CP T+Q L T L N ++
Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALT-PNLLI 133
Query: 221 KRLIASWQEQN 231
+ +I+ W ++N
Sbjct: 134 REMISKWCKKN 144
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 118 SLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPV 177
SL R+R K+ I +SCS + I T P F CPI+ + DPV
Sbjct: 4 SLRVRRRGGSVSKKEIIPVTSCSEEVEI-------------TIPSQFQCPISYELMKDPV 50
Query: 178 TLETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYVLKRLIASWQEQNPGG 234
+ +G TY+R I++W E G +CP+T L+S ++P N+ ++R+I W + GG
Sbjct: 51 IIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQIP--NHTIRRMIQGWCGSSLGG 106
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLPKTNYV 219
P F+CPI+ I DPV + TG TY+R +I++W+ G +SCP+T+Q ++ T L N+
Sbjct: 8 PSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDL-TPNHT 66
Query: 220 LKRLIASW 227
L+RLI SW
Sbjct: 67 LRRLIQSW 74
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKR 222
D CPI+ I DPV LE+G TY+R +I +W GN +CP T + L ST L N+ +K+
Sbjct: 281 DLRCPISLEIMSDPVVLESGHTYDRSSITKWFASGNITCPKTGKTLVSTVLVD-NFSVKQ 339
Query: 223 LIASWQEQN 231
+I S+ +QN
Sbjct: 340 VIQSYSKQN 348
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLPKTNYV 219
P F+CPI+ I DPV + TG TY+R +I++W+ G +SCP+T+Q ++ L N+
Sbjct: 13 PPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADL-TPNHT 71
Query: 220 LKRLIASWQEQN 231
L+RLI SW N
Sbjct: 72 LRRLIQSWCTLN 83
>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31
PE=2 SV=1
Length = 444
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P F+CPI+ DPVTL TGQTYER I +W G+ +CP T Q+L L N L
Sbjct: 61 PSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWD-DLVTPNKTL 119
Query: 221 KRLIASWQEQN 231
+LI +W Q
Sbjct: 120 HQLIYTWFSQK 130
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43
PE=2 SV=1
Length = 811
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIE--RGNS---SCPITRQKLSSTKLPKTNY 218
F+CP+T + +PVTLE GQT+ER AI++W + R N SCPIT ++LS T L +
Sbjct: 29 FICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKELSITDLSPS-I 87
Query: 219 VLKRLIASWQEQN 231
L+ I W+ +N
Sbjct: 88 ALRNTIEEWRARN 100
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44
PE=1 SV=1
Length = 801
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNS-----SCPITRQKLSSTKLPKTNY 218
F+CP+T + DPVTLE G+T+ER AI++W + SCP+T Q+L+ST + +
Sbjct: 27 FICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTSQELTSTDV-SASI 85
Query: 219 VLKRLIASWQEQN 231
L+ I W+ +N
Sbjct: 86 ALRNTIEEWRSRN 98
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKL-SSTKLPKTNYV 219
P F+CPI+ DPVTL TGQTYER I +W G+ +CP T Q+L T P N
Sbjct: 65 PSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVTP--NKT 122
Query: 220 LKRLIASWQEQN 231
L LI +W Q
Sbjct: 123 LHHLIYTWFSQK 134
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTN 217
T P +F CPI+ + DPV + TG TY+R +I+ WI GN +CP+T L++ ++P N
Sbjct: 30 TIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIP--N 87
Query: 218 YVLKRLIASW 227
+ ++++I W
Sbjct: 88 HTIRKMIQGW 97
>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29
PE=1 SV=1
Length = 415
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P F CPI+ + PV+L TG TY+R +IQ W++ GN++CP T Q L TK N
Sbjct: 11 TVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQ-LLKTKDFVPNL 69
Query: 219 VLKRLIASWQE 229
L+RLI W +
Sbjct: 70 TLQRLINIWSD 80
>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28
PE=1 SV=1
Length = 409
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNY 218
T P F CPI+ + PV+L TG TY+R +IQ W++ GN++CP T Q L + + N
Sbjct: 10 TVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEFVP-NL 68
Query: 219 VLKRLIASWQE 229
L RLI W +
Sbjct: 69 TLHRLIDHWSD 79
>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18
PE=2 SV=1
Length = 697
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213
+D +CPI+ I DPV +ETG TY+R +I +W GN +CPIT + L+ST+L
Sbjct: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFGSGNITCPITGKILTSTEL 341
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P F+CPI+ I DPVT +G TY+R+ I +W+E+ SCP+T+Q L N++L
Sbjct: 11 PNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKV-PSCPVTKQPLPLDSDLTPNHML 69
Query: 221 KRLIASWQEQN 231
+RLI W +N
Sbjct: 70 RRLIQHWCVEN 80
>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27
PE=2 SV=1
Length = 420
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK-LPKTN 217
T P F CPI+ + PV+L TG TY+R +IQ W++ GN++CP T Q L + +P N
Sbjct: 9 TVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIP--N 66
Query: 218 YVLKRLIASWQE 229
L+RLI W +
Sbjct: 67 RTLQRLIEIWSD 78
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP+ F+CPIT I +DP G TYE AI W ERG+ + P+ ++L T L N
Sbjct: 353 PPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMINKRLPHTSLV-PNLA 411
Query: 220 LKRLIASW 227
L+ I W
Sbjct: 412 LRSAIQEW 419
>sp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana
GN=PUB46 PE=3 SV=1
Length = 458
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
PK+F+C ++ I +PV + +GQTYE+R I EW+ + +CP T+Q LS +L N+++
Sbjct: 73 PKEFICTLSNTIMIEPVIIASGQTYEKRYITEWL-KHERTCPKTKQVLSH-RLWIPNHLI 130
Query: 221 KRLIASW 227
LI W
Sbjct: 131 SDLITQW 137
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP F+CPI+ + +P G TYE +++EW++ G+ + P+T KL+ L N+
Sbjct: 497 PPSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHNNLV-PNHA 555
Query: 220 LKRLIASWQEQN 231
L+ I W ++N
Sbjct: 556 LRSAIQEWLQRN 567
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P +F+CPIT I DPV G +YER AI+ WI N + P+T L +T L N L
Sbjct: 418 PDEFLCPITREIMKDPVIAADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLL-TPNRTL 476
Query: 221 KRLIASW 227
K I W
Sbjct: 477 KMAIFRW 483
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 804 ELVHVDSSENGKVLSIACFRDK--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861
+L H + ++ VLS A D + SG D T+ V+ +L + + +H + VT
Sbjct: 230 QLAHTLTGQSAPVLSCAYSPDGQMLVSGSVDKTVTVYQADEGVL--LYTLHQHDRYVTAC 287
Query: 862 AILQSGEMLYSGSLDKTARV 881
A + ++ +GS+DK+ +
Sbjct: 288 AFSPTAPLIATGSMDKSVNI 307
>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32
PE=2 SV=1
Length = 805
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP ++CPI + DP+ G TYE AI+EW+ G+ + P+T K+ L N+
Sbjct: 735 PPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNL-IPNHA 793
Query: 220 LKRLIASWQEQ 230
L I WQ Q
Sbjct: 794 LHLAIQDWQNQ 804
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P + CPI I ++P G TYER+AI W+E+ N S P+TRQKL KL N+ L
Sbjct: 726 PSHYFCPILREIMEEPEIAADGFTYERKAILAWLEKHNIS-PVTRQKLDHFKL-TPNHTL 783
Query: 221 KRLIASWQEQ 230
+ I W+ +
Sbjct: 784 RSAIRDWKSR 793
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVL 220
P+ F+CPI+ + DP G TYE AI W++ G+ + P+T KL TKL N L
Sbjct: 326 PQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPMTNTKLHHTKLV-PNLAL 384
Query: 221 KRLIASW 227
+ I W
Sbjct: 385 RSAIQEW 391
>sp|Q9SGT1|PUB57_ARATH U-box domain-containing protein 57 OS=Arabidopsis thaliana GN=PUB57
PE=2 SV=2
Length = 391
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 155 IGKHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209
+ + PP F+CPIT + +P G TYE AIQ+WI G+ + P+T KLS
Sbjct: 318 VDEQQPPPSFICPITQDVMKNPHMAADGFTYELEAIQKWINTGHRTSPMTNLKLS 372
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYV 219
PP F CP+ + +P G TY+RRAI+EW+E +S P+T L + L N+
Sbjct: 749 PPSHFFCPLLKDVMKEPCIAADGYTYDRRAIEEWMENHRTS-PVTNSPLQNVNL-LPNHT 806
Query: 220 LKRLIASWQEQN 231
L I W+ +N
Sbjct: 807 LYAAIVEWRNRN 818
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,294,224
Number of Sequences: 539616
Number of extensions: 12346481
Number of successful extensions: 44310
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 43614
Number of HSP's gapped (non-prelim): 843
length of query: 897
length of database: 191,569,459
effective HSP length: 127
effective length of query: 770
effective length of database: 123,038,227
effective search space: 94739434790
effective search space used: 94739434790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)