Query 002641
Match_columns 897
No_of_seqs 622 out of 4012
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:08:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0263 Transcription initiati 99.8 2.5E-19 5.4E-24 206.3 12.6 137 757-895 469-618 (707)
2 KOG0271 Notchless-like WD40 re 99.8 2E-18 4.4E-23 184.0 11.6 127 766-893 108-244 (480)
3 KOG0271 Notchless-like WD40 re 99.8 3.9E-18 8.4E-23 181.9 12.7 137 756-895 132-287 (480)
4 KOG0272 U4/U6 small nuclear ri 99.7 5.8E-18 1.3E-22 182.9 9.5 136 757-894 237-385 (459)
5 KOG0293 WD40 repeat-containing 99.7 3.4E-17 7.3E-22 176.1 13.4 173 718-892 150-349 (519)
6 KOG0279 G protein beta subunit 99.7 5.2E-17 1.1E-21 167.8 13.6 135 757-893 81-231 (315)
7 KOG0279 G protein beta subunit 99.7 6.7E-17 1.5E-21 167.0 13.2 127 764-893 54-189 (315)
8 KOG0263 Transcription initiati 99.7 5.1E-17 1.1E-21 187.4 11.7 129 757-887 511-651 (707)
9 KOG0319 WD40-repeat-containing 99.7 1.5E-16 3.3E-21 181.7 13.3 127 769-897 459-590 (775)
10 KOG0272 U4/U6 small nuclear ri 99.7 1.1E-16 2.4E-21 173.1 10.4 124 769-894 299-428 (459)
11 KOG0295 WD40 repeat-containing 99.7 7E-16 1.5E-20 164.3 14.5 135 756-892 210-372 (406)
12 KOG0266 WD40 repeat-containing 99.7 6.4E-16 1.4E-20 180.2 15.1 118 769-888 199-321 (456)
13 KOG0285 Pleiotropic regulator 99.7 6.9E-16 1.5E-20 163.6 12.9 138 756-895 168-318 (460)
14 KOG0286 G-protein beta subunit 99.7 9.7E-16 2.1E-20 159.3 13.5 115 779-895 103-228 (343)
15 PTZ00421 coronin; Provisional 99.6 1.7E-15 3.8E-20 177.0 17.2 122 769-892 71-206 (493)
16 KOG0286 G-protein beta subunit 99.6 1.1E-15 2.3E-20 159.0 13.4 129 762-893 134-268 (343)
17 KOG0291 WD40-repeat-containing 99.6 1.1E-15 2.5E-20 174.6 13.7 124 769-892 346-517 (893)
18 KOG0273 Beta-transducin family 99.6 1.3E-15 2.9E-20 166.5 13.1 123 768-892 354-490 (524)
19 KOG0285 Pleiotropic regulator 99.6 6.4E-16 1.4E-20 163.9 10.2 129 764-894 142-275 (460)
20 PF04564 U-box: U-box domain; 99.6 3.9E-16 8.4E-21 135.1 5.9 72 160-232 1-72 (73)
21 KOG0276 Vesicle coat complex C 99.6 8.7E-16 1.9E-20 172.3 10.2 128 758-887 116-259 (794)
22 KOG0316 Conserved WD40 repeat- 99.6 2.6E-15 5.6E-20 151.9 11.6 128 767-896 11-145 (307)
23 KOG0645 WD40 repeat protein [G 99.6 7.2E-15 1.6E-19 151.5 13.7 122 766-887 98-227 (312)
24 KOG0284 Polyadenylation factor 99.6 1.4E-15 3.1E-20 163.8 8.5 123 770-894 177-304 (464)
25 KOG0275 Conserved WD40 repeat- 99.6 6.1E-16 1.3E-20 161.7 5.3 127 766-894 256-388 (508)
26 KOG0266 WD40 repeat-containing 99.6 2.3E-14 5E-19 167.2 16.5 136 758-893 222-373 (456)
27 KOG0284 Polyadenylation factor 99.6 2.5E-15 5.4E-20 162.0 7.5 127 767-895 132-263 (464)
28 KOG0281 Beta-TrCP (transducin 99.6 2E-15 4.4E-20 159.3 6.5 115 767-887 314-430 (499)
29 KOG0315 G-protein beta subunit 99.6 1.7E-14 3.6E-19 147.2 12.7 121 767-887 77-247 (311)
30 KOG0283 WD40 repeat-containing 99.6 6.8E-15 1.5E-19 171.3 11.2 119 767-888 261-443 (712)
31 PTZ00420 coronin; Provisional 99.6 5.3E-14 1.1E-18 165.8 18.4 123 768-893 69-206 (568)
32 KOG0313 Microtubule binding pr 99.6 2.7E-14 5.9E-19 153.0 13.6 126 768-893 188-386 (423)
33 KOG0265 U5 snRNP-specific prot 99.6 1.7E-14 3.8E-19 150.6 11.7 123 768-892 42-171 (338)
34 KOG0281 Beta-TrCP (transducin 99.6 3.5E-15 7.5E-20 157.6 6.6 135 756-895 252-399 (499)
35 KOG0276 Vesicle coat complex C 99.5 2.6E-14 5.7E-19 160.6 11.2 125 769-895 93-226 (794)
36 KOG0319 WD40-repeat-containing 99.5 3.3E-14 7.2E-19 162.8 11.8 129 757-887 481-621 (775)
37 KOG0318 WD40 repeat stress pro 99.5 9.7E-14 2.1E-18 153.8 14.4 121 767-887 184-352 (603)
38 KOG0292 Vesicle coat complex C 99.5 7.1E-14 1.5E-18 161.9 12.2 117 769-887 47-167 (1202)
39 KOG0282 mRNA splicing factor [ 99.5 2.4E-14 5.2E-19 157.5 7.3 126 767-895 208-341 (503)
40 KOG0292 Vesicle coat complex C 99.5 1.1E-13 2.3E-18 160.5 12.4 144 751-894 105-290 (1202)
41 KOG0645 WD40 repeat protein [G 99.5 3.8E-13 8.3E-18 138.9 15.2 124 770-893 58-192 (312)
42 KOG0278 Serine/threonine kinas 99.5 4.1E-14 8.9E-19 144.2 7.5 131 757-887 77-299 (334)
43 KOG0275 Conserved WD40 repeat- 99.5 1.9E-14 4.2E-19 150.6 4.9 126 768-895 208-347 (508)
44 KOG0269 WD40 repeat-containing 99.5 7E-14 1.5E-18 160.8 9.6 113 774-887 135-252 (839)
45 KOG0273 Beta-transducin family 99.5 1.9E-13 4E-18 150.0 12.2 114 774-887 236-391 (524)
46 smart00504 Ubox Modified RING 99.5 4.6E-14 9.9E-19 118.6 5.4 63 163-227 1-63 (63)
47 KOG0315 G-protein beta subunit 99.5 1E-12 2.2E-17 134.3 15.0 134 759-893 144-297 (311)
48 KOG0316 Conserved WD40 repeat- 99.5 3.4E-13 7.4E-18 136.7 11.4 130 757-888 35-176 (307)
49 KOG0647 mRNA export protein (c 99.4 5.2E-13 1.1E-17 139.7 12.2 112 773-887 27-147 (347)
50 KOG0274 Cdc4 and related F-box 99.4 6.8E-13 1.5E-17 155.9 14.7 123 769-895 245-370 (537)
51 KOG0277 Peroxisomal targeting 99.4 5.8E-13 1.3E-17 136.4 11.7 117 769-887 100-223 (311)
52 KOG0302 Ribosome Assembly prot 99.4 4.8E-13 1E-17 143.4 11.3 119 769-887 253-380 (440)
53 KOG4283 Transcription-coupled 99.4 7.7E-13 1.7E-17 137.7 12.1 128 767-894 37-230 (397)
54 KOG0306 WD40-repeat-containing 99.4 3.6E-13 7.9E-18 154.3 10.6 118 767-886 544-665 (888)
55 KOG0295 WD40 repeat-containing 99.4 4.1E-13 9E-18 143.4 10.3 134 759-894 128-275 (406)
56 KOG0274 Cdc4 and related F-box 99.4 7.7E-13 1.7E-17 155.4 13.4 134 756-894 266-411 (537)
57 PTZ00421 coronin; Provisional 99.4 2.3E-12 4.9E-17 151.0 17.0 117 769-887 121-247 (493)
58 KOG0277 Peroxisomal targeting 99.4 8.2E-13 1.8E-17 135.3 11.4 111 775-887 63-180 (311)
59 KOG0301 Phospholipase A2-activ 99.4 4.9E-13 1.1E-17 152.4 10.8 129 757-891 77-214 (745)
60 KOG0301 Phospholipase A2-activ 99.4 1E-12 2.3E-17 149.8 13.2 126 756-885 117-249 (745)
61 KOG4283 Transcription-coupled 99.4 7E-13 1.5E-17 138.0 9.9 106 787-892 160-285 (397)
62 KOG0646 WD40 repeat protein [G 99.4 1.9E-12 4.2E-17 142.2 13.0 134 760-893 102-316 (476)
63 KOG0318 WD40 repeat stress pro 99.4 2.9E-12 6.3E-17 142.2 14.2 129 763-893 131-274 (603)
64 KOG0264 Nucleosome remodeling 99.4 1.7E-12 3.7E-17 142.4 12.1 119 768-887 222-349 (422)
65 KOG0308 Conserved WD40 repeat- 99.4 3.3E-12 7.1E-17 144.8 13.8 137 757-895 91-254 (735)
66 KOG0313 Microtubule binding pr 99.4 2E-12 4.3E-17 138.8 11.4 128 756-885 276-418 (423)
67 KOG0300 WD40 repeat-containing 99.4 1.4E-12 3.1E-17 136.5 9.8 124 767-892 266-395 (481)
68 KOG0294 WD40 repeat-containing 99.4 3.3E-12 7.1E-17 134.5 12.3 110 776-887 44-159 (362)
69 KOG0305 Anaphase promoting com 99.4 2.3E-12 5E-17 146.9 12.0 120 768-887 296-463 (484)
70 KOG0310 Conserved WD40 repeat- 99.4 2.1E-12 4.5E-17 142.6 11.1 114 772-887 67-186 (487)
71 KOG1407 WD40 repeat protein [F 99.4 1.4E-12 3E-17 134.2 9.1 129 767-895 14-230 (313)
72 KOG0291 WD40-repeat-containing 99.4 5.4E-12 1.2E-16 144.9 14.0 117 775-893 309-431 (893)
73 KOG0303 Actin-binding protein 99.4 2.5E-12 5.5E-17 138.5 10.3 116 769-887 77-205 (472)
74 KOG0289 mRNA splicing factor [ 99.4 7.3E-12 1.6E-16 136.4 14.0 118 768-887 298-421 (506)
75 PLN00181 protein SPA1-RELATED; 99.3 8.5E-12 1.8E-16 155.6 16.5 120 770-892 480-614 (793)
76 KOG0296 Angio-associated migra 99.3 1.4E-11 3.1E-16 131.9 15.4 135 757-893 82-229 (399)
77 KOG0265 U5 snRNP-specific prot 99.3 6.5E-12 1.4E-16 131.5 12.2 137 758-897 66-217 (338)
78 KOG0310 Conserved WD40 repeat- 99.3 4.8E-12 1E-16 139.8 11.6 121 767-887 104-270 (487)
79 KOG0640 mRNA cleavage stimulat 99.3 4.8E-12 1E-16 132.6 10.9 129 767-895 106-302 (430)
80 KOG0973 Histone transcription 99.3 6.4E-12 1.4E-16 150.1 12.2 117 768-886 64-202 (942)
81 KOG0267 Microtubule severing p 99.3 1.9E-12 4.1E-17 148.1 7.0 123 769-893 66-193 (825)
82 KOG0282 mRNA splicing factor [ 99.3 3E-12 6.5E-17 141.2 7.9 129 757-887 233-374 (503)
83 PLN00181 protein SPA1-RELATED; 99.3 2.7E-11 5.9E-16 151.1 17.6 109 776-887 536-650 (793)
84 PTZ00420 coronin; Provisional 99.3 3.9E-11 8.4E-16 141.7 17.8 115 769-886 121-249 (568)
85 KOG1332 Vesicle coat complex C 99.3 5.4E-12 1.2E-16 128.8 9.0 120 768-887 6-136 (299)
86 KOG0264 Nucleosome remodeling 99.3 2.4E-11 5.3E-16 133.4 13.5 118 770-887 269-406 (422)
87 KOG0643 Translation initiation 99.3 2.7E-11 5.9E-16 125.1 12.6 135 758-893 29-229 (327)
88 KOG0643 Translation initiation 99.3 3.8E-11 8.3E-16 124.0 13.5 119 769-887 6-179 (327)
89 KOG0772 Uncharacterized conser 99.3 9.3E-12 2E-16 137.8 9.6 118 769-887 163-349 (641)
90 KOG1332 Vesicle coat complex C 99.3 9.2E-12 2E-16 127.1 8.7 125 763-887 46-195 (299)
91 KOG0283 WD40 repeat-containing 99.3 1.7E-11 3.8E-16 143.2 11.9 115 769-888 365-484 (712)
92 cd00200 WD40 WD40 domain, foun 99.3 7.1E-11 1.5E-15 124.2 15.6 123 768-892 4-131 (289)
93 KOG0772 Uncharacterized conser 99.3 9.3E-12 2E-16 137.8 9.0 119 769-887 264-396 (641)
94 KOG0639 Transducin-like enhanc 99.3 8.1E-12 1.8E-16 137.6 8.3 112 774-887 466-583 (705)
95 KOG1445 Tumor-specific antigen 99.3 6.4E-12 1.4E-16 141.3 7.4 112 774-887 629-752 (1012)
96 KOG0267 Microtubule severing p 99.3 6.4E-12 1.4E-16 143.9 7.5 129 757-887 88-228 (825)
97 PF15227 zf-C3HC4_4: zinc fing 99.2 4.1E-12 9E-17 97.4 3.4 39 166-204 1-42 (42)
98 KOG2177 Predicted E3 ubiquitin 99.2 1.9E-11 4.2E-16 134.0 9.9 133 159-327 9-141 (386)
99 KOG0268 Sof1-like rRNA process 99.2 1.4E-11 3E-16 131.7 7.2 130 756-887 84-304 (433)
100 KOG0294 WD40 repeat-containing 99.2 8.8E-11 1.9E-15 123.9 12.9 131 757-887 59-283 (362)
101 KOG0302 Ribosome Assembly prot 99.2 3.9E-11 8.4E-16 128.9 10.0 127 770-896 208-347 (440)
102 KOG0308 Conserved WD40 repeat- 99.2 7.4E-11 1.6E-15 134.0 12.5 115 771-887 169-287 (735)
103 cd00200 WD40 WD40 domain, foun 99.2 3.2E-10 7E-15 119.2 16.7 122 770-893 48-174 (289)
104 KOG0647 mRNA export protein (c 99.2 1.4E-10 3E-15 121.8 13.0 131 757-887 46-283 (347)
105 KOG0640 mRNA cleavage stimulat 99.2 8E-11 1.7E-15 123.6 10.6 119 774-894 217-345 (430)
106 KOG0642 Cell-cycle nuclear pro 99.2 5E-11 1.1E-15 133.8 9.6 126 768-893 289-434 (577)
107 KOG1034 Transcriptional repres 99.2 6.9E-11 1.5E-15 125.2 9.7 101 785-887 105-213 (385)
108 KOG0300 WD40 repeat-containing 99.2 1.6E-10 3.4E-15 121.4 12.1 134 758-893 291-436 (481)
109 KOG0269 WD40 repeat-containing 99.2 3.2E-11 6.8E-16 139.3 7.6 164 722-887 35-209 (839)
110 KOG0305 Anaphase promoting com 99.2 9.7E-11 2.1E-15 133.8 11.4 121 773-894 217-341 (484)
111 KOG0641 WD40 repeat protein [G 99.2 2.9E-10 6.4E-15 114.6 13.3 105 781-887 190-305 (350)
112 KOG0973 Histone transcription 99.1 2E-10 4.3E-15 137.6 12.8 120 776-895 16-170 (942)
113 KOG0293 WD40 repeat-containing 99.1 1.2E-10 2.5E-15 126.3 9.5 112 774-887 396-515 (519)
114 KOG0306 WD40-repeat-containing 99.1 2.1E-10 4.5E-15 132.1 11.9 117 774-892 66-187 (888)
115 KOG0299 U3 snoRNP-associated p 99.1 1.1E-10 2.5E-15 128.2 9.2 116 770-887 199-318 (479)
116 TIGR00599 rad18 DNA repair pro 99.1 4.7E-11 1E-15 133.7 6.3 72 159-232 22-93 (397)
117 KOG1446 Histone H3 (Lys4) meth 99.1 6.9E-10 1.5E-14 117.6 13.9 113 773-887 14-132 (311)
118 KOG1036 Mitotic spindle checkp 99.1 4.4E-10 9.5E-15 118.6 12.3 110 775-887 15-126 (323)
119 KOG0270 WD40 repeat-containing 99.1 2E-10 4.4E-15 125.8 10.0 117 771-887 241-406 (463)
120 KOG0644 Uncharacterized conser 99.1 3.6E-11 7.7E-16 139.3 3.8 112 768-885 185-300 (1113)
121 KOG0270 WD40 repeat-containing 99.1 1.1E-10 2.5E-15 127.8 7.5 101 784-886 191-318 (463)
122 KOG2096 WD40 repeat protein [G 99.1 4.7E-10 1E-14 118.3 11.4 143 745-887 156-310 (420)
123 KOG0646 WD40 repeat protein [G 99.1 7.2E-10 1.6E-14 122.2 12.2 114 774-887 82-208 (476)
124 KOG0278 Serine/threonine kinas 99.1 5.4E-11 1.2E-15 121.7 2.8 125 767-893 53-182 (334)
125 KOG0288 WD40 repeat protein Ti 99.1 3.2E-11 7E-16 130.8 1.2 125 764-890 166-297 (459)
126 KOG1009 Chromatin assembly com 99.1 6.1E-10 1.3E-14 121.0 10.8 118 775-892 16-161 (434)
127 KOG0649 WD40 repeat protein [G 99.1 1.1E-09 2.3E-14 112.1 11.7 104 786-892 73-194 (325)
128 PLN03208 E3 ubiquitin-protein 99.0 1.1E-10 2.3E-15 117.5 3.9 60 159-219 14-88 (193)
129 KOG0296 Angio-associated migra 99.0 3.1E-09 6.7E-14 114.2 15.0 124 768-893 59-187 (399)
130 KOG0290 Conserved WD40 repeat- 99.0 9.8E-10 2.1E-14 114.9 10.8 114 774-887 152-320 (364)
131 KOG1310 WD40 repeat protein [G 99.0 5E-10 1.1E-14 125.0 8.5 123 765-887 42-180 (758)
132 KOG0641 WD40 repeat protein [G 99.0 3.5E-09 7.5E-14 107.0 13.4 142 743-885 187-349 (350)
133 KOG2445 Nuclear pore complex c 99.0 3.5E-09 7.5E-14 111.7 13.5 119 768-886 8-145 (361)
134 KOG1407 WD40 repeat protein [F 99.0 2.7E-09 5.9E-14 110.3 12.3 127 759-887 85-263 (313)
135 KOG1274 WD40 repeat protein [G 99.0 3E-09 6.4E-14 125.4 13.6 118 768-887 133-264 (933)
136 KOG1446 Histone H3 (Lys4) meth 99.0 4.5E-09 9.8E-14 111.4 13.4 126 767-894 94-272 (311)
137 KOG1539 WD repeat protein [Gen 99.0 2.3E-09 5E-14 125.0 12.1 116 776-891 451-613 (910)
138 KOG0642 Cell-cycle nuclear pro 98.9 2.8E-09 6.1E-14 120.0 10.6 120 768-887 339-563 (577)
139 KOG0268 Sof1-like rRNA process 98.9 1.1E-09 2.3E-14 117.5 6.4 105 779-887 235-347 (433)
140 KOG0288 WD40 repeat protein Ti 98.9 6.1E-09 1.3E-13 113.4 12.3 125 757-883 318-459 (459)
141 KOG0289 mRNA splicing factor [ 98.9 6.5E-09 1.4E-13 113.7 12.4 126 767-894 255-387 (506)
142 KOG0299 U3 snoRNP-associated p 98.9 3.3E-09 7.2E-14 116.9 10.0 124 767-892 136-282 (479)
143 COG5222 Uncharacterized conser 98.9 5.7E-10 1.2E-14 115.9 3.7 152 40-230 181-342 (427)
144 KOG1007 WD repeat protein TSSC 98.9 3E-09 6.5E-14 111.1 9.0 102 784-887 183-291 (370)
145 KOG0321 WD40 repeat-containing 98.9 3E-09 6.4E-14 121.0 8.8 106 782-887 109-250 (720)
146 KOG1036 Mitotic spindle checkp 98.9 9.1E-09 2E-13 108.7 11.8 125 767-892 88-270 (323)
147 KOG0287 Postreplication repair 98.9 5.3E-10 1.1E-14 118.2 2.2 72 159-232 19-90 (442)
148 KOG1063 RNA polymerase II elon 98.9 6E-09 1.3E-13 119.5 10.6 120 767-887 519-650 (764)
149 KOG2394 WD40 protein DMR-N9 [G 98.9 5.6E-09 1.2E-13 116.8 10.0 120 763-887 283-454 (636)
150 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.1E-09 2.5E-14 82.8 3.2 38 166-204 1-39 (39)
151 KOG1273 WD40 repeat protein [G 98.9 1.5E-08 3.3E-13 107.0 12.6 116 776-893 26-192 (405)
152 PF14835 zf-RING_6: zf-RING of 98.9 6.5E-10 1.4E-14 90.9 1.6 61 160-224 4-65 (65)
153 KOG1007 WD repeat protein TSSC 98.8 1.5E-08 3.2E-13 106.1 10.9 121 767-887 208-363 (370)
154 KOG0823 Predicted E3 ubiquitin 98.8 1.6E-09 3.5E-14 110.7 3.0 57 161-218 45-103 (230)
155 KOG0639 Transducin-like enhanc 98.8 8.7E-09 1.9E-13 114.2 7.5 111 777-887 513-665 (705)
156 KOG1009 Chromatin assembly com 98.8 1.4E-08 3E-13 110.7 8.7 123 763-887 55-197 (434)
157 KOG4328 WD40 protein [Function 98.8 2.1E-08 4.5E-13 110.6 9.3 114 774-887 188-355 (498)
158 KOG0321 WD40 repeat-containing 98.8 1.7E-08 3.8E-13 114.9 8.5 110 778-887 57-177 (720)
159 COG5432 RAD18 RING-finger-cont 98.7 4.5E-09 9.8E-14 109.1 3.1 71 159-231 21-91 (391)
160 KOG0307 Vesicle coat complex C 98.7 9.8E-09 2.1E-13 123.8 6.2 106 787-893 176-293 (1049)
161 PF00097 zf-C3HC4: Zinc finger 98.7 8.4E-09 1.8E-13 78.8 3.5 39 166-204 1-41 (41)
162 KOG1274 WD40 repeat protein [G 98.7 1.1E-07 2.4E-12 112.5 13.9 119 775-895 56-179 (933)
163 KOG1034 Transcriptional repres 98.7 1.2E-08 2.6E-13 108.4 5.2 114 769-884 131-278 (385)
164 KOG4227 WD40 repeat protein [G 98.7 7.8E-08 1.7E-12 103.8 11.1 119 767-887 50-181 (609)
165 KOG1408 WD40 repeat protein [F 98.7 4.1E-08 8.9E-13 112.6 9.4 94 773-867 459-559 (1080)
166 KOG0974 WD-repeat protein WDR6 98.7 4.8E-08 1.1E-12 116.9 9.9 117 768-887 170-290 (967)
167 KOG2048 WD40 repeat protein [G 98.7 1.6E-07 3.4E-12 108.0 13.2 104 784-887 79-186 (691)
168 KOG0649 WD40 repeat protein [G 98.7 2.3E-07 4.9E-12 95.3 12.3 115 774-893 115-244 (325)
169 PF08662 eIF2A: Eukaryotic tra 98.6 4.4E-07 9.6E-12 94.0 14.7 109 775-889 61-183 (194)
170 KOG2096 WD40 repeat protein [G 98.6 2.3E-07 5E-12 98.4 12.5 126 766-892 79-224 (420)
171 PF13445 zf-RING_UBOX: RING-ty 98.6 1.3E-08 2.8E-13 78.2 2.2 36 166-202 1-43 (43)
172 KOG2445 Nuclear pore complex c 98.6 1.2E-07 2.6E-12 100.3 9.9 100 785-885 184-318 (361)
173 PF13920 zf-C3HC4_3: Zinc fing 98.6 3E-08 6.4E-13 79.4 3.7 47 162-209 1-48 (50)
174 KOG1273 WD40 repeat protein [G 98.6 8.4E-08 1.8E-12 101.5 7.4 75 816-892 26-103 (405)
175 KOG1445 Tumor-specific antigen 98.6 1.2E-07 2.5E-12 107.7 9.0 123 767-892 73-209 (1012)
176 KOG0303 Actin-binding protein 98.6 2.4E-07 5.2E-12 100.7 10.8 129 756-887 99-251 (472)
177 KOG0320 Predicted E3 ubiquitin 98.6 3.3E-08 7.2E-13 96.9 3.8 52 161-213 129-182 (187)
178 KOG2919 Guanine nucleotide-bin 98.6 2E-07 4.4E-12 99.1 9.7 115 771-886 205-328 (406)
179 KOG0974 WD-repeat protein WDR6 98.6 2.8E-07 6.2E-12 110.5 11.8 116 777-895 137-256 (967)
180 KOG1188 WD40 repeat protein [G 98.6 2.1E-07 4.6E-12 99.7 9.5 103 784-887 83-198 (376)
181 KOG0322 G-protein beta subunit 98.5 1.6E-07 3.5E-12 97.5 7.9 111 772-884 204-322 (323)
182 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 8.3E-07 1.8E-11 96.1 13.9 114 777-893 160-288 (300)
183 KOG4328 WD40 protein [Function 98.5 2E-07 4.4E-12 103.0 8.9 107 779-885 285-399 (498)
184 KOG0317 Predicted E3 ubiquitin 98.5 4.7E-08 1E-12 102.8 3.7 53 160-213 236-288 (293)
185 KOG2110 Uncharacterized conser 98.5 1.1E-06 2.3E-11 95.3 13.9 102 784-887 140-250 (391)
186 KOG0771 Prolactin regulatory e 98.5 5.6E-07 1.2E-11 98.9 11.8 117 777-894 148-321 (398)
187 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 8.2E-07 1.8E-11 96.2 13.2 103 786-892 2-111 (300)
188 PHA02929 N1R/p28-like protein; 98.5 6.5E-08 1.4E-12 101.7 4.2 49 160-209 171-227 (238)
189 COG2319 FOG: WD40 repeat [Gene 98.5 1.6E-06 3.4E-11 95.6 15.4 117 768-887 150-273 (466)
190 KOG2048 WD40 repeat protein [G 98.5 6.6E-07 1.4E-11 103.0 12.0 112 774-887 155-277 (691)
191 PF13639 zf-RING_2: Ring finge 98.5 6.1E-08 1.3E-12 75.3 2.0 40 165-205 2-44 (44)
192 KOG4367 Predicted Zn-finger pr 98.5 5.7E-07 1.2E-11 98.1 9.9 34 161-194 2-35 (699)
193 cd00162 RING RING-finger (Real 98.5 1.3E-07 2.8E-12 72.9 3.6 44 165-208 1-45 (45)
194 KOG4378 Nuclear protein COP1 [ 98.4 1.5E-06 3.2E-11 96.8 12.3 129 758-887 98-241 (673)
195 KOG2919 Guanine nucleotide-bin 98.4 1E-06 2.2E-11 93.9 10.5 117 776-895 161-293 (406)
196 TIGR00570 cdk7 CDK-activating 98.4 2.1E-06 4.4E-11 93.0 13.0 66 162-227 2-75 (309)
197 KOG1408 WD40 repeat protein [F 98.4 9.7E-07 2.1E-11 101.7 10.6 108 778-887 601-715 (1080)
198 KOG0280 Uncharacterized conser 98.4 1.5E-06 3.3E-11 91.7 11.2 108 778-886 126-242 (339)
199 KOG0650 WD40 repeat nucleolar 98.4 4.7E-07 1E-11 102.8 7.8 109 774-882 608-732 (733)
200 PF00400 WD40: WD domain, G-be 98.4 8.6E-07 1.9E-11 66.5 6.6 38 846-883 2-39 (39)
201 KOG1272 WD40-repeat-containing 98.4 3.3E-07 7.1E-12 101.5 6.0 109 781-891 217-330 (545)
202 KOG1539 WD repeat protein [Gen 98.4 3E-06 6.6E-11 99.6 13.6 104 784-889 171-279 (910)
203 COG2319 FOG: WD40 repeat [Gene 98.4 3.4E-06 7.4E-11 92.9 13.6 104 782-887 119-231 (466)
204 KOG4378 Nuclear protein COP1 [ 98.4 2E-06 4.4E-11 95.7 11.2 111 774-887 165-282 (673)
205 smart00184 RING Ring finger. E 98.4 3.4E-07 7.4E-12 68.0 3.5 39 166-204 1-39 (39)
206 KOG1063 RNA polymerase II elon 98.3 1.9E-06 4.2E-11 99.4 10.8 118 768-885 567-699 (764)
207 KOG1523 Actin-related protein 98.3 1.7E-06 3.6E-11 92.3 8.8 118 767-884 49-175 (361)
208 KOG1517 Guanine nucleotide bin 98.3 3.7E-06 8.1E-11 100.8 12.6 109 784-893 1220-1341(1387)
209 KOG0311 Predicted E3 ubiquitin 98.3 1.1E-07 2.5E-12 102.1 -0.4 69 159-228 39-109 (381)
210 PLN03200 cellulose synthase-in 98.3 2.2E-05 4.7E-10 103.1 19.7 194 312-516 12-218 (2102)
211 PHA02926 zinc finger-like prot 98.3 4.5E-07 9.8E-12 92.2 3.4 51 159-209 166-230 (242)
212 KOG0644 Uncharacterized conser 98.2 7.7E-07 1.7E-11 104.2 4.8 123 768-892 227-434 (1113)
213 PF14634 zf-RING_5: zinc-RING 98.2 6.5E-07 1.4E-11 69.6 2.9 41 165-206 1-44 (44)
214 KOG2111 Uncharacterized conser 98.2 1.3E-05 2.9E-10 85.5 13.6 102 784-887 147-258 (346)
215 KOG0307 Vesicle coat complex C 98.2 2.2E-06 4.9E-11 104.0 8.8 112 774-887 208-329 (1049)
216 KOG0290 Conserved WD40 repeat- 98.2 5.4E-06 1.2E-10 87.4 10.0 105 786-892 114-234 (364)
217 KOG2164 Predicted E3 ubiquitin 98.2 6.2E-07 1.3E-11 101.2 3.2 51 163-213 186-240 (513)
218 KOG2394 WD40 protein DMR-N9 [G 98.2 3.8E-06 8.2E-11 94.7 9.1 111 775-887 222-364 (636)
219 PF11789 zf-Nse: Zinc-finger o 98.2 5.3E-07 1.2E-11 73.9 1.7 44 161-204 9-54 (57)
220 KOG1517 Guanine nucleotide bin 98.2 7.3E-06 1.6E-10 98.4 11.5 111 777-887 1169-1289(1387)
221 KOG3914 WD repeat protein WDR4 98.2 4.5E-06 9.7E-11 91.6 9.0 103 787-892 124-231 (390)
222 KOG1587 Cytoplasmic dynein int 98.2 4.6E-06 1E-10 98.3 9.7 119 769-887 394-518 (555)
223 KOG0650 WD40 repeat nucleolar 98.2 1.5E-05 3.3E-10 90.9 13.2 132 760-892 387-562 (733)
224 KOG1524 WD40 repeat-containing 98.2 3.2E-06 6.9E-11 95.0 7.4 120 764-887 95-218 (737)
225 KOG1188 WD40 repeat protein [G 98.2 9E-06 1.9E-10 87.5 10.3 137 757-893 90-251 (376)
226 COG5574 PEX10 RING-finger-cont 98.2 9.5E-07 2E-11 92.1 2.6 53 161-213 213-266 (271)
227 KOG1523 Actin-related protein 98.1 1.1E-05 2.4E-10 86.1 10.6 113 774-886 11-131 (361)
228 KOG1240 Protein kinase contain 98.1 2E-05 4.3E-10 96.2 13.0 111 777-887 1053-1227(1431)
229 KOG1538 Uncharacterized conser 98.1 2.4E-05 5.2E-10 89.9 12.6 120 767-887 47-213 (1081)
230 KOG2110 Uncharacterized conser 98.1 3.3E-05 7.1E-10 84.1 12.8 109 784-895 96-215 (391)
231 KOG1310 WD40 repeat protein [G 98.1 6.8E-06 1.5E-10 92.6 7.8 82 804-886 41-126 (758)
232 KOG2660 Locus-specific chromos 98.1 1.7E-06 3.7E-11 92.9 2.8 67 159-227 11-82 (331)
233 KOG2106 Uncharacterized conser 98.0 7.6E-05 1.6E-09 83.8 15.0 125 757-883 386-519 (626)
234 KOG0771 Prolactin regulatory e 98.0 5.9E-06 1.3E-10 91.1 6.0 73 817-892 148-223 (398)
235 KOG0978 E3 ubiquitin ligase in 98.0 1.6E-06 3.5E-11 102.5 1.6 55 159-213 639-693 (698)
236 PF00400 WD40: WD domain, G-be 98.0 1.1E-05 2.4E-10 60.4 5.5 35 805-839 3-39 (39)
237 KOG2106 Uncharacterized conser 98.0 4.8E-05 1E-09 85.4 12.7 116 768-887 363-479 (626)
238 KOG1538 Uncharacterized conser 98.0 2E-05 4.3E-10 90.5 9.9 111 775-886 14-163 (1081)
239 PF08662 eIF2A: Eukaryotic tra 98.0 7.4E-05 1.6E-09 77.4 13.1 91 797-892 39-141 (194)
240 KOG2055 WD40 repeat protein [G 98.0 5E-05 1.1E-09 84.5 12.2 120 774-893 214-383 (514)
241 KOG0322 G-protein beta subunit 98.0 1.9E-05 4E-10 82.5 8.0 110 787-896 167-293 (323)
242 KOG1524 WD40 repeat-containing 97.9 3E-05 6.5E-10 87.4 9.3 99 770-881 183-282 (737)
243 KOG2055 WD40 repeat protein [G 97.9 9.9E-05 2.2E-09 82.2 11.8 109 775-886 305-418 (514)
244 KOG4159 Predicted E3 ubiquitin 97.9 9.9E-06 2.1E-10 91.4 4.0 72 158-230 79-154 (398)
245 PRK01742 tolB translocation pr 97.8 0.0001 2.2E-09 85.9 12.1 110 771-886 201-323 (429)
246 PRK01742 tolB translocation pr 97.8 8E-05 1.7E-09 86.7 11.1 96 794-892 183-287 (429)
247 KOG1409 Uncharacterized conser 97.8 3.7E-05 8.1E-10 82.9 7.3 75 768-842 192-271 (404)
248 KOG1963 WD40 repeat protein [G 97.8 0.0001 2.2E-09 87.9 11.5 127 767-895 155-291 (792)
249 KOG2111 Uncharacterized conser 97.8 0.00025 5.4E-09 76.1 13.2 135 761-897 75-225 (346)
250 PLN03200 cellulose synthase-in 97.8 0.00082 1.8E-08 88.9 20.6 280 314-612 447-767 (2102)
251 KOG3881 Uncharacterized conser 97.8 0.0001 2.2E-09 80.7 10.5 102 785-887 216-322 (412)
252 PF12678 zf-rbx1: RING-H2 zinc 97.8 2.1E-05 4.5E-10 68.2 4.1 39 166-205 22-73 (73)
253 KOG2139 WD40 repeat protein [G 97.8 0.00032 7E-09 76.3 13.8 108 774-885 141-268 (445)
254 PRK05137 tolB translocation pr 97.8 0.00025 5.4E-09 82.7 14.3 118 771-891 199-328 (435)
255 KOG4547 WD40 repeat-containing 97.8 0.00016 3.6E-09 82.9 12.1 111 782-896 67-184 (541)
256 KOG1409 Uncharacterized conser 97.8 6E-05 1.3E-09 81.3 8.0 100 787-887 167-272 (404)
257 KOG1587 Cytoplasmic dynein int 97.8 0.00015 3.3E-09 85.7 11.8 105 781-885 251-428 (555)
258 KOG1334 WD40 repeat protein [G 97.7 5.6E-05 1.2E-09 84.7 7.5 122 766-887 135-265 (559)
259 KOG4547 WD40 repeat-containing 97.7 0.00021 4.5E-09 82.0 11.8 113 770-886 99-221 (541)
260 KOG4642 Chaperone-dependent E3 97.7 2.8E-05 6E-10 80.5 4.2 77 157-234 205-281 (284)
261 KOG1963 WD40 repeat protein [G 97.7 0.00015 3.2E-09 86.4 10.7 117 767-886 199-323 (792)
262 KOG1240 Protein kinase contain 97.7 0.00013 2.8E-09 89.3 9.6 87 800-886 1034-1129(1431)
263 KOG1272 WD40-repeat-containing 97.7 8.1E-05 1.8E-09 83.0 7.1 106 773-883 251-360 (545)
264 KOG0280 Uncharacterized conser 97.6 0.00028 6.2E-09 74.9 10.3 75 768-842 160-242 (339)
265 KOG0297 TNF receptor-associate 97.6 4.4E-05 9.6E-10 87.2 4.4 69 159-228 17-86 (391)
266 KOG2321 WD40 repeat protein [G 97.6 0.00028 6.1E-09 80.5 10.3 113 773-887 175-304 (703)
267 KOG0824 Predicted E3 ubiquitin 97.6 3.5E-05 7.6E-10 81.7 2.5 51 164-214 8-58 (324)
268 PRK04922 tolB translocation pr 97.6 0.00081 1.8E-08 78.4 13.9 113 773-888 203-327 (433)
269 KOG3881 Uncharacterized conser 97.5 0.00042 9.2E-09 76.1 10.5 109 778-887 154-279 (412)
270 COG5152 Uncharacterized conser 97.5 4E-05 8.8E-10 76.1 2.3 59 163-224 196-254 (259)
271 KOG2139 WD40 repeat protein [G 97.5 0.00036 7.7E-09 75.9 9.5 107 784-892 109-233 (445)
272 KOG4190 Uncharacterized conser 97.5 0.00012 2.6E-09 82.6 5.8 119 769-887 731-908 (1034)
273 PRK03629 tolB translocation pr 97.5 0.0015 3.2E-08 76.2 14.8 114 773-889 198-323 (429)
274 PRK02889 tolB translocation pr 97.5 0.0011 2.4E-08 77.1 13.5 113 776-891 242-366 (427)
275 PRK11028 6-phosphogluconolacto 97.4 0.0011 2.5E-08 74.0 12.8 109 776-886 82-206 (330)
276 KOG1813 Predicted E3 ubiquitin 97.4 6.9E-05 1.5E-09 79.4 2.6 48 163-211 241-288 (313)
277 PRK04922 tolB translocation pr 97.4 0.0018 3.9E-08 75.6 14.4 112 778-892 252-375 (433)
278 PRK11028 6-phosphogluconolacto 97.4 0.0018 3.8E-08 72.5 13.8 110 777-886 129-259 (330)
279 TIGR02800 propeller_TolB tol-p 97.4 0.002 4.2E-08 74.4 14.1 113 774-889 190-314 (417)
280 PRK03629 tolB translocation pr 97.3 0.0029 6.3E-08 73.7 15.1 112 778-892 247-370 (429)
281 KOG2695 WD40 repeat protein [G 97.3 0.00049 1.1E-08 74.5 7.7 110 782-892 261-384 (425)
282 PRK05137 tolB translocation pr 97.3 0.0021 4.6E-08 75.0 13.9 95 795-892 182-285 (435)
283 PRK02889 tolB translocation pr 97.3 0.0018 3.9E-08 75.4 13.1 110 773-885 195-314 (427)
284 KOG4714 Nucleoporin [Nuclear s 97.3 0.00019 4E-09 75.1 4.2 73 814-887 180-256 (319)
285 PF11768 DUF3312: Protein of u 97.2 0.00098 2.1E-08 77.2 9.3 73 811-887 257-331 (545)
286 KOG4227 WD40 repeat protein [G 97.2 0.0021 4.6E-08 70.4 10.8 116 772-887 104-227 (609)
287 KOG2879 Predicted E3 ubiquitin 97.2 0.0003 6.5E-09 73.9 4.3 50 160-209 236-287 (298)
288 KOG1064 RAVE (regulator of V-A 97.2 0.00024 5.1E-09 89.9 3.9 87 793-893 2313-2407(2439)
289 KOG4714 Nucleoporin [Nuclear s 97.2 0.00075 1.6E-08 70.7 6.9 107 775-883 182-316 (319)
290 PF02239 Cytochrom_D1: Cytochr 97.2 0.0046 9.9E-08 70.6 13.9 102 788-892 9-116 (369)
291 KOG4497 Uncharacterized conser 97.2 0.0012 2.5E-08 71.2 8.1 107 777-887 12-124 (447)
292 KOG4532 WD40-like repeat conta 97.2 0.0056 1.2E-07 64.6 12.9 112 776-887 161-284 (344)
293 smart00320 WD40 WD40 repeats. 97.2 0.001 2.2E-08 46.9 5.6 38 846-883 3-40 (40)
294 TIGR02800 propeller_TolB tol-p 97.2 0.0058 1.3E-07 70.5 14.7 111 777-890 237-359 (417)
295 PF12861 zf-Apc11: Anaphase-pr 97.1 0.00039 8.5E-09 61.1 3.5 35 176-210 46-83 (85)
296 PRK00178 tolB translocation pr 97.1 0.0061 1.3E-07 70.9 14.7 113 773-888 198-322 (430)
297 KOG0802 E3 ubiquitin ligase [P 97.1 0.00019 4.1E-09 85.9 2.1 48 161-209 289-341 (543)
298 KOG1064 RAVE (regulator of V-A 97.1 0.00076 1.6E-08 85.6 7.2 117 774-892 2252-2374(2439)
299 KOG3914 WD repeat protein WDR4 97.1 0.0017 3.7E-08 71.7 9.2 76 769-844 147-226 (390)
300 KOG2321 WD40 repeat protein [G 97.0 0.0029 6.3E-08 72.6 9.9 99 789-887 149-260 (703)
301 PRK04792 tolB translocation pr 97.0 0.008 1.7E-07 70.5 13.9 112 775-889 219-342 (448)
302 KOG4628 Predicted E3 ubiquitin 97.0 0.00042 9.1E-09 76.5 2.7 47 164-210 230-279 (348)
303 PF05804 KAP: Kinesin-associat 96.9 0.043 9.4E-07 67.0 19.6 268 327-632 262-537 (708)
304 COG5243 HRD1 HRD ubiquitin lig 96.9 0.00062 1.3E-08 73.9 3.4 47 161-208 285-344 (491)
305 KOG0309 Conserved WD40 repeat- 96.9 0.0019 4.1E-08 75.7 7.4 116 778-895 75-200 (1081)
306 KOG2066 Vacuolar assembly/sort 96.9 0.0061 1.3E-07 72.6 11.6 101 782-887 80-189 (846)
307 KOG1002 Nucleotide excision re 96.9 0.00042 9.1E-09 78.0 2.0 53 159-211 532-588 (791)
308 KOG0309 Conserved WD40 repeat- 96.8 0.001 2.2E-08 77.8 4.7 109 778-887 120-234 (1081)
309 PRK01029 tolB translocation pr 96.8 0.015 3.3E-07 67.7 14.1 112 778-892 285-410 (428)
310 KOG4190 Uncharacterized conser 96.8 0.001 2.2E-08 75.3 3.6 81 805-887 727-814 (1034)
311 KOG0826 Predicted E3 ubiquitin 96.7 0.0013 2.9E-08 70.7 4.1 52 159-211 296-348 (357)
312 KOG1275 PAB-dependent poly(A) 96.7 0.0058 1.3E-07 73.5 9.4 106 781-886 183-343 (1118)
313 KOG1354 Serine/threonine prote 96.7 0.0085 1.8E-07 65.2 9.7 113 773-886 25-194 (433)
314 COG5540 RING-finger-containing 96.7 0.001 2.3E-08 70.6 2.8 47 164-210 324-373 (374)
315 PLN02919 haloacid dehalogenase 96.6 0.019 4E-07 74.1 14.0 107 779-888 745-891 (1057)
316 PRK01029 tolB translocation pr 96.6 0.02 4.3E-07 66.8 12.7 114 778-892 235-366 (428)
317 PRK00178 tolB translocation pr 96.5 0.034 7.3E-07 64.7 14.4 112 778-892 247-370 (430)
318 KOG1354 Serine/threonine prote 96.4 0.0056 1.2E-07 66.5 6.5 115 770-886 161-302 (433)
319 KOG2041 WD40 repeat protein [G 96.4 0.012 2.7E-07 68.8 9.3 108 775-883 16-143 (1189)
320 KOG4532 WD40-like repeat conta 96.3 0.027 5.9E-07 59.5 10.7 101 787-887 130-235 (344)
321 KOG4172 Predicted E3 ubiquitin 96.3 0.0011 2.4E-08 52.4 0.4 45 164-208 8-53 (62)
322 COG5170 CDC55 Serine/threonine 96.3 0.0062 1.4E-07 65.2 5.8 121 770-892 169-318 (460)
323 KOG2160 Armadillo/beta-catenin 96.3 0.049 1.1E-06 60.3 12.7 188 414-615 99-288 (342)
324 COG4946 Uncharacterized protei 96.2 0.084 1.8E-06 59.8 14.2 116 770-887 356-479 (668)
325 PRK04792 tolB translocation pr 96.2 0.053 1.1E-06 63.7 13.5 111 778-891 266-388 (448)
326 smart00320 WD40 WD40 repeats. 96.2 0.0085 1.8E-07 41.9 4.3 35 805-839 4-40 (40)
327 KOG1334 WD40 repeat protein [G 96.1 0.0062 1.3E-07 68.8 4.8 109 777-887 340-468 (559)
328 PF05804 KAP: Kinesin-associat 96.0 0.037 8E-07 67.6 11.2 162 433-607 278-439 (708)
329 KOG0804 Cytoplasmic Zn-finger 96.0 0.0022 4.7E-08 71.8 0.6 44 163-209 175-222 (493)
330 PLN02919 haloacid dehalogenase 96.0 0.077 1.7E-06 68.6 14.5 112 779-890 688-838 (1057)
331 KOG2042 Ubiquitin fusion degra 95.9 0.0089 1.9E-07 73.6 5.6 72 159-232 866-938 (943)
332 KOG1645 RING-finger-containing 95.9 0.02 4.4E-07 63.5 7.5 80 805-887 185-268 (463)
333 KOG2695 WD40 repeat protein [G 95.9 0.012 2.7E-07 64.0 5.6 106 789-896 228-344 (425)
334 COG5170 CDC55 Serine/threonine 95.8 0.033 7.3E-07 59.8 8.6 112 774-886 27-202 (460)
335 KOG3039 Uncharacterized conser 95.8 0.0058 1.3E-07 63.2 2.8 52 162-214 220-275 (303)
336 KOG4497 Uncharacterized conser 95.8 0.056 1.2E-06 58.7 10.0 99 773-874 49-152 (447)
337 KOG2444 WD40 repeat protein [G 95.8 0.025 5.4E-07 58.8 7.2 101 785-887 70-179 (238)
338 KOG3621 WD40 repeat-containing 95.7 0.055 1.2E-06 64.0 10.4 113 774-886 34-155 (726)
339 KOG2315 Predicted translation 95.6 0.12 2.6E-06 59.8 12.4 105 777-887 274-392 (566)
340 KOG4640 Anaphase-promoting com 95.6 0.041 8.9E-07 64.4 8.8 76 813-891 20-99 (665)
341 PF11768 DUF3312: Protein of u 95.5 0.063 1.4E-06 62.7 9.9 72 772-843 258-331 (545)
342 cd00020 ARM Armadillo/beta-cat 95.5 0.075 1.6E-06 49.2 8.9 118 386-515 2-119 (120)
343 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.011 2.4E-07 64.2 3.6 54 159-214 109-166 (260)
344 PF14783 BBS2_Mid: Ciliary BBS 95.4 0.42 9E-06 44.7 13.2 96 779-880 8-109 (111)
345 KOG4224 Armadillo repeat prote 95.4 0.64 1.4E-05 51.5 16.5 201 322-538 175-392 (550)
346 KOG4185 Predicted E3 ubiquitin 95.4 0.048 1E-06 60.3 8.3 64 163-227 3-77 (296)
347 PF15492 Nbas_N: Neuroblastoma 95.4 0.37 8.1E-06 51.8 14.4 37 855-891 229-266 (282)
348 PF02239 Cytochrom_D1: Cytochr 95.2 0.44 9.6E-06 54.5 15.8 110 775-887 38-160 (369)
349 KOG1734 Predicted RING-contain 95.2 0.0056 1.2E-07 64.2 0.2 54 161-214 222-286 (328)
350 KOG1039 Predicted E3 ubiquitin 94.9 0.014 3E-07 65.1 2.4 49 161-209 159-221 (344)
351 KOG0827 Predicted E3 ubiquitin 94.8 0.11 2.5E-06 57.3 8.9 50 164-213 5-60 (465)
352 PF10282 Lactonase: Lactonase, 94.6 0.75 1.6E-05 52.0 15.3 118 775-892 193-331 (345)
353 KOG1785 Tyrosine kinase negati 94.5 0.016 3.5E-07 63.7 1.6 48 165-212 371-419 (563)
354 cd00020 ARM Armadillo/beta-cat 94.3 0.17 3.6E-06 46.9 7.8 79 440-518 2-80 (120)
355 KOG1912 WD40 repeat protein [G 94.3 0.18 4E-06 60.2 9.4 100 785-887 26-145 (1062)
356 KOG4640 Anaphase-promoting com 94.2 0.15 3.2E-06 59.9 8.4 89 774-864 21-114 (665)
357 KOG4692 Predicted E3 ubiquitin 94.1 0.028 6E-07 61.0 2.3 48 162-210 421-468 (489)
358 KOG2315 Predicted translation 94.1 0.46 9.9E-06 55.2 12.0 92 796-892 252-352 (566)
359 KOG0825 PHD Zn-finger protein 94.1 0.011 2.4E-07 69.8 -0.9 51 161-212 121-174 (1134)
360 KOG4224 Armadillo repeat prote 94.0 0.29 6.4E-06 54.1 9.8 215 372-612 145-366 (550)
361 PF11793 FANCL_C: FANCL C-term 93.8 0.015 3.4E-07 49.9 -0.3 47 163-209 2-66 (70)
362 KOG0828 Predicted E3 ubiquitin 93.8 0.033 7.2E-07 63.0 2.1 51 160-210 568-635 (636)
363 PRK04043 tolB translocation pr 93.7 1.1 2.5E-05 52.0 14.8 112 775-889 189-313 (419)
364 KOG2079 Vacuolar assembly/sort 93.7 0.2 4.4E-06 62.0 8.6 97 784-884 98-202 (1206)
365 KOG3800 Predicted E3 ubiquitin 93.7 0.043 9.4E-07 58.7 2.6 49 165-213 2-55 (300)
366 KOG1001 Helicase-like transcri 93.7 0.025 5.4E-07 68.9 1.0 49 164-213 455-504 (674)
367 KOG1275 PAB-dependent poly(A) 93.7 0.25 5.4E-06 60.1 9.2 100 784-887 146-256 (1118)
368 COG2706 3-carboxymuconate cycl 93.6 1 2.2E-05 49.9 13.2 111 777-887 92-223 (346)
369 PF14570 zf-RING_4: RING/Ubox 93.6 0.056 1.2E-06 42.6 2.5 43 166-208 1-47 (48)
370 KOG4265 Predicted E3 ubiquitin 93.5 0.044 9.5E-07 60.4 2.5 47 163-210 290-337 (349)
371 KOG1571 Predicted E3 ubiquitin 93.5 0.04 8.8E-07 60.7 2.1 47 159-209 301-347 (355)
372 KOG2041 WD40 repeat protein [G 93.4 0.16 3.4E-06 60.1 6.8 76 812-887 13-103 (1189)
373 KOG3617 WD40 and TPR repeat-co 93.4 0.17 3.6E-06 60.9 7.1 90 794-886 40-132 (1416)
374 PF14447 Prok-RING_4: Prokaryo 93.2 0.052 1.1E-06 43.7 1.9 49 161-212 5-53 (55)
375 COG5113 UFD2 Ubiquitin fusion 92.9 0.19 4E-06 58.8 6.4 73 159-233 850-923 (929)
376 PF10282 Lactonase: Lactonase, 92.9 2.5 5.3E-05 47.8 15.6 111 775-885 145-275 (345)
377 KOG1912 WD40 repeat protein [G 92.8 0.81 1.8E-05 55.0 11.5 97 786-884 80-185 (1062)
378 smart00744 RINGv The RING-vari 92.8 0.12 2.5E-06 41.2 3.3 41 165-205 1-49 (49)
379 KOG0882 Cyclophilin-related pe 92.7 0.52 1.1E-05 53.4 9.3 107 788-894 115-241 (558)
380 COG5194 APC11 Component of SCF 92.6 0.1 2.3E-06 45.0 2.9 44 165-209 33-81 (88)
381 KOG2817 Predicted E3 ubiquitin 92.5 0.082 1.8E-06 59.1 2.8 47 161-207 332-383 (394)
382 KOG1832 HIV-1 Vpr-binding prot 92.5 0.092 2E-06 63.3 3.3 123 764-891 1092-1221(1516)
383 KOG3039 Uncharacterized conser 92.4 0.087 1.9E-06 54.8 2.7 37 159-195 39-75 (303)
384 TIGR03300 assembly_YfgL outer 92.4 1.1 2.4E-05 51.0 11.9 101 785-891 241-345 (377)
385 KOG1645 RING-finger-containing 92.2 0.23 5E-06 55.4 5.7 113 769-885 189-315 (463)
386 PF10508 Proteasom_PSMB: Prote 92.0 9.5 0.00021 45.6 19.6 188 312-513 72-269 (503)
387 TIGR03300 assembly_YfgL outer 91.8 1 2.2E-05 51.3 10.9 96 784-882 278-376 (377)
388 TIGR02658 TTQ_MADH_Hv methylam 91.8 2.3 5.1E-05 48.2 13.4 89 795-887 27-138 (352)
389 TIGR02658 TTQ_MADH_Hv methylam 91.7 3 6.5E-05 47.3 14.0 105 784-892 205-338 (352)
390 KOG4275 Predicted E3 ubiquitin 91.2 0.037 8.1E-07 58.9 -1.6 41 163-208 300-341 (350)
391 KOG0882 Cyclophilin-related pe 91.0 0.24 5.3E-06 55.9 4.3 105 781-886 61-175 (558)
392 KOG3161 Predicted E3 ubiquitin 90.9 0.1 2.2E-06 60.9 1.4 62 159-225 7-77 (861)
393 PF13360 PQQ_2: PQQ-like domai 90.8 2.2 4.8E-05 44.7 11.5 102 784-887 35-142 (238)
394 KOG2114 Vacuolar assembly/sort 90.8 1.4 3E-05 53.8 10.6 106 778-883 28-153 (933)
395 PRK04043 tolB translocation pr 90.7 3.9 8.4E-05 47.7 14.2 112 776-892 235-364 (419)
396 PF14783 BBS2_Mid: Ciliary BBS 90.7 2.2 4.7E-05 40.0 9.7 62 816-883 2-69 (111)
397 COG5219 Uncharacterized conser 90.5 0.1 2.3E-06 63.1 1.1 47 163-209 1469-1523(1525)
398 COG4946 Uncharacterized protei 90.5 4.8 0.00011 46.2 13.8 104 784-891 331-437 (668)
399 COG5175 MOT2 Transcriptional r 90.5 0.16 3.5E-06 55.0 2.3 52 161-213 13-68 (480)
400 KOG1832 HIV-1 Vpr-binding prot 90.3 0.35 7.5E-06 58.6 5.1 81 804-886 1092-1176(1516)
401 KOG0166 Karyopherin (importin) 90.3 7.7 0.00017 45.8 15.8 217 313-542 233-465 (514)
402 PF05290 Baculo_IE-1: Baculovi 90.2 0.25 5.4E-06 47.1 3.0 51 162-212 79-135 (140)
403 PF04826 Arm_2: Armadillo-like 90.1 24 0.00053 38.2 18.7 184 314-514 13-203 (254)
404 PF02891 zf-MIZ: MIZ/SP-RING z 89.8 0.33 7.3E-06 38.8 3.1 45 163-207 2-50 (50)
405 KOG2066 Vacuolar assembly/sort 89.8 1.1 2.4E-05 54.1 8.7 92 784-883 48-144 (846)
406 KOG4362 Transcriptional regula 89.8 0.11 2.5E-06 62.1 0.6 67 160-227 18-86 (684)
407 PF08553 VID27: VID27 cytoplas 89.7 1.8 3.8E-05 53.8 10.6 95 787-884 544-646 (794)
408 COG5064 SRP1 Karyopherin (impo 89.6 2.8 6E-05 46.3 10.7 107 380-498 103-210 (526)
409 PF04762 IKI3: IKI3 family; I 89.3 2.8 6.2E-05 53.6 12.4 113 776-889 78-248 (928)
410 KOG3113 Uncharacterized conser 89.2 0.26 5.7E-06 51.6 2.6 52 160-214 108-163 (293)
411 KOG1493 Anaphase-promoting com 89.0 0.17 3.6E-06 43.4 0.8 45 165-209 33-81 (84)
412 KOG3002 Zn finger protein [Gen 89.0 0.35 7.7E-06 53.3 3.6 63 159-229 44-107 (299)
413 COG2706 3-carboxymuconate cycl 89.0 7.2 0.00016 43.5 13.5 117 774-891 40-181 (346)
414 PF12894 Apc4_WD40: Anaphase-p 88.6 1.2 2.7E-05 35.1 5.4 31 855-885 11-41 (47)
415 PF08450 SGL: SMP-30/Gluconola 87.7 11 0.00024 40.0 14.2 115 775-889 87-217 (246)
416 PF10508 Proteasom_PSMB: Prote 87.4 24 0.00051 42.3 17.9 118 388-518 116-233 (503)
417 KOG2079 Vacuolar assembly/sort 87.2 1.1 2.3E-05 55.9 6.4 79 814-893 90-169 (1206)
418 KOG4739 Uncharacterized protei 86.9 0.25 5.4E-06 52.0 0.8 57 165-227 5-63 (233)
419 KOG0166 Karyopherin (importin) 86.1 4.6 0.0001 47.6 10.6 126 382-518 100-226 (514)
420 PF08450 SGL: SMP-30/Gluconola 85.7 21 0.00046 37.9 14.9 103 780-885 7-123 (246)
421 PF13360 PQQ_2: PQQ-like domai 85.6 13 0.00028 38.8 13.1 99 784-888 121-233 (238)
422 KOG1008 Uncharacterized conser 85.5 0.29 6.2E-06 57.6 0.4 102 786-887 71-186 (783)
423 PF04762 IKI3: IKI3 family; I 85.0 7.2 0.00016 50.0 12.5 111 775-887 211-335 (928)
424 PF07433 DUF1513: Protein of u 84.6 16 0.00036 40.4 13.4 36 854-889 215-251 (305)
425 KOG2314 Translation initiation 84.2 2.1 4.6E-05 49.9 6.5 74 815-893 212-299 (698)
426 KOG2395 Protein involved in va 84.1 4 8.6E-05 47.6 8.6 94 789-885 398-500 (644)
427 KOG2979 Protein involved in DN 83.8 0.92 2E-05 48.1 3.2 45 163-207 176-222 (262)
428 KOG1814 Predicted E3 ubiquitin 83.5 1.1 2.4E-05 50.4 3.9 35 161-195 182-219 (445)
429 PF10313 DUF2415: Uncharacteri 83.5 3.3 7.1E-05 32.0 5.3 32 856-887 1-35 (43)
430 KOG1008 Uncharacterized conser 82.9 0.33 7.2E-06 57.1 -0.5 114 766-883 95-223 (783)
431 KOG1916 Nuclear protein, conta 82.5 0.61 1.3E-05 56.8 1.5 87 795-884 153-264 (1283)
432 PRK02888 nitrous-oxide reducta 82.3 13 0.00029 44.9 12.4 92 794-886 295-405 (635)
433 KOG2314 Translation initiation 82.2 7.8 0.00017 45.4 9.9 105 776-886 213-335 (698)
434 PF00514 Arm: Armadillo/beta-c 82.1 1.4 2.9E-05 33.3 2.8 35 435-469 2-36 (41)
435 PRK13800 putative oxidoreducta 81.9 50 0.0011 42.5 18.4 79 425-514 722-802 (897)
436 KOG0314 Predicted E3 ubiquitin 81.8 0.54 1.2E-05 54.1 0.7 68 159-229 215-286 (448)
437 KOG1812 Predicted E3 ubiquitin 81.6 0.93 2E-05 52.0 2.5 50 163-212 146-206 (384)
438 COG5354 Uncharacterized protei 81.6 6.3 0.00014 45.7 8.9 88 795-887 255-350 (561)
439 COG5109 Uncharacterized conser 80.9 0.98 2.1E-05 48.9 2.1 49 159-207 332-385 (396)
440 COG5220 TFB3 Cdk activating ki 80.7 0.56 1.2E-05 48.8 0.3 49 162-210 9-65 (314)
441 PF01602 Adaptin_N: Adaptin N 79.9 72 0.0016 37.9 18.0 252 360-631 117-390 (526)
442 PF12894 Apc4_WD40: Anaphase-p 79.9 4.8 0.0001 31.8 5.2 30 813-842 11-42 (47)
443 PF13646 HEAT_2: HEAT repeats; 79.8 7.7 0.00017 33.8 7.4 24 447-470 1-25 (88)
444 COG5236 Uncharacterized conser 79.8 1.3 2.7E-05 48.5 2.6 49 160-208 58-107 (493)
445 KOG0298 DEAD box-containing he 79.7 0.53 1.1E-05 59.7 -0.3 47 160-207 1150-1197(1394)
446 KOG2930 SCF ubiquitin ligase, 79.6 1.2 2.6E-05 40.5 2.0 28 180-208 80-107 (114)
447 KOG1941 Acetylcholine receptor 78.9 0.85 1.8E-05 50.7 1.0 46 162-207 364-414 (518)
448 KOG0946 ER-Golgi vesicle-tethe 78.9 24 0.00051 43.4 12.7 101 441-545 118-232 (970)
449 PF07800 DUF1644: Protein of u 78.8 1.6 3.4E-05 43.1 2.7 53 162-214 1-96 (162)
450 KOG1048 Neural adherens juncti 76.9 15 0.00033 45.0 10.6 156 303-470 508-679 (717)
451 KOG4649 PQQ (pyrrolo-quinoline 76.7 42 0.00092 36.2 12.5 99 785-887 23-125 (354)
452 PF15492 Nbas_N: Neuroblastoma 76.6 16 0.00034 39.7 9.6 68 825-892 10-80 (282)
453 PRK11138 outer membrane biogen 76.3 22 0.00047 40.9 11.7 97 784-884 293-393 (394)
454 PF08596 Lgl_C: Lethal giant l 75.9 29 0.00062 40.2 12.3 73 811-885 84-173 (395)
455 PF04841 Vps16_N: Vps16, N-ter 75.5 60 0.0013 37.8 15.0 30 856-885 217-246 (410)
456 PF10367 Vps39_2: Vacuolar sor 75.3 1.1 2.4E-05 41.2 0.6 33 159-191 74-108 (109)
457 PF11715 Nup160: Nucleoporin N 75.2 14 0.00029 44.6 10.0 35 857-891 216-255 (547)
458 KOG1916 Nuclear protein, conta 74.0 3.9 8.5E-05 50.3 4.7 113 774-887 184-325 (1283)
459 PF01602 Adaptin_N: Adaptin N 73.9 1.4E+02 0.0031 35.3 18.3 172 320-518 120-298 (526)
460 PRK02888 nitrous-oxide reducta 72.4 25 0.00054 42.7 10.8 55 831-887 294-353 (635)
461 PRK11138 outer membrane biogen 71.8 36 0.00078 39.1 12.0 97 785-887 256-355 (394)
462 COG5354 Uncharacterized protei 71.7 12 0.00026 43.5 7.7 91 799-894 16-126 (561)
463 COG3813 Uncharacterized protei 71.2 3.6 7.8E-05 35.0 2.5 37 182-222 28-64 (84)
464 PF14569 zf-UDP: Zinc-binding 71.1 4.4 9.5E-05 35.2 3.1 47 163-209 9-62 (80)
465 KOG1920 IkappaB kinase complex 70.8 18 0.00039 46.3 9.4 110 778-887 200-324 (1265)
466 KOG1940 Zn-finger protein [Gen 70.5 2.6 5.7E-05 45.8 2.0 43 163-206 158-204 (276)
467 KOG1920 IkappaB kinase complex 70.4 44 0.00094 43.0 12.6 111 775-885 70-230 (1265)
468 PF07191 zinc-ribbons_6: zinc- 67.6 0.66 1.4E-05 39.6 -2.5 41 163-209 1-41 (70)
469 PF07569 Hira: TUP1-like enhan 67.6 33 0.00071 36.3 9.6 72 815-887 14-97 (219)
470 PF05605 zf-Di19: Drought indu 67.5 2.5 5.4E-05 34.3 0.9 38 162-206 1-39 (54)
471 COG0823 TolB Periplasmic compo 67.3 19 0.00042 42.0 8.5 109 776-887 240-360 (425)
472 KOG2114 Vacuolar assembly/sort 67.2 67 0.0014 40.0 12.8 112 774-887 126-245 (933)
473 PF08569 Mo25: Mo25-like; Int 67.0 97 0.0021 35.0 13.7 128 384-521 69-198 (335)
474 PF12234 Rav1p_C: RAVE protein 66.7 82 0.0018 38.6 13.7 90 791-883 47-154 (631)
475 PRK09687 putative lyase; Provi 66.4 1.9E+02 0.0042 31.7 15.6 176 445-692 90-268 (280)
476 KOG4199 Uncharacterized conser 65.7 56 0.0012 36.6 10.8 274 322-612 115-406 (461)
477 PF08553 VID27: VID27 cytoplas 64.2 42 0.0009 42.2 10.8 105 781-887 489-607 (794)
478 PF04053 Coatomer_WDAD: Coatom 64.1 45 0.00098 39.2 10.7 103 774-886 70-174 (443)
479 KOG3630 Nuclear pore complex, 63.9 16 0.00034 46.5 7.0 99 787-887 116-230 (1405)
480 PHA03096 p28-like protein; Pro 63.9 3.9 8.6E-05 44.9 1.8 44 164-207 179-232 (284)
481 PHA02713 hypothetical protein; 63.7 24 0.00051 42.8 8.6 65 821-887 462-535 (557)
482 PF03178 CPSF_A: CPSF A subuni 62.3 94 0.002 34.5 12.6 92 794-886 106-203 (321)
483 KOG3970 Predicted E3 ubiquitin 61.9 13 0.00028 38.7 4.9 44 165-208 52-104 (299)
484 PF10647 Gmad1: Lipoprotein Lp 61.7 95 0.0021 33.5 12.0 108 775-884 25-143 (253)
485 PF08746 zf-RING-like: RING-li 60.9 8.4 0.00018 29.8 2.6 39 166-204 1-43 (43)
486 PF03854 zf-P11: P-11 zinc fin 60.6 4.1 9E-05 31.9 0.9 37 173-210 10-47 (50)
487 PF08728 CRT10: CRT10; InterP 60.0 28 0.00061 42.9 8.2 101 784-884 113-245 (717)
488 PRK09687 putative lyase; Provi 59.5 2.7E+02 0.0059 30.5 19.8 126 360-514 57-186 (280)
489 PLN02189 cellulose synthase 58.9 6.4 0.00014 49.9 2.6 46 164-209 35-87 (1040)
490 KOG4649 PQQ (pyrrolo-quinoline 58.8 1E+02 0.0022 33.5 10.9 99 784-884 62-164 (354)
491 PF02897 Peptidase_S9_N: Proly 58.6 88 0.0019 36.0 11.9 107 778-886 128-261 (414)
492 KOG2395 Protein involved in va 58.4 48 0.001 39.1 9.1 99 784-884 344-458 (644)
493 PRK13616 lipoprotein LpqB; Pro 58.2 52 0.0011 40.2 10.1 98 776-881 352-472 (591)
494 PRK13800 putative oxidoreducta 58.0 3.1E+02 0.0067 35.4 17.6 55 446-514 715-769 (897)
495 PF12234 Rav1p_C: RAVE protein 57.8 57 0.0012 39.9 10.2 59 825-884 42-103 (631)
496 PF10272 Tmpp129: Putative tra 57.3 7.2 0.00016 44.1 2.5 34 179-212 304-354 (358)
497 PF03224 V-ATPase_H_N: V-ATPas 56.8 1.9E+02 0.0041 32.1 13.8 174 315-497 57-249 (312)
498 PF00930 DPPIV_N: Dipeptidyl p 56.7 24 0.00052 39.9 6.7 89 794-884 22-130 (353)
499 PF04826 Arm_2: Armadillo-like 56.3 1.2E+02 0.0026 32.9 11.6 150 442-609 9-163 (254)
500 KOG3621 WD40 repeat-containing 56.3 16 0.00035 44.1 5.1 69 774-842 77-155 (726)
No 1
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.79 E-value=2.5e-19 Score=206.28 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=126.0
Q ss_pred CCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 757 GLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
+..|.+.++|. +++||...++.+.|+|.|.|+||+|.|++.++|... ..++.+.||.+.|.|+.|+|+
T Consensus 469 cSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~ 548 (707)
T KOG0263|consen 469 CSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSN 548 (707)
T ss_pred ccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCccc
Confidence 45677788884 467999999999999999999999999999999987 899999999999999999997
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
++++||.|.|||+||+.++ ..++.|.||+++|++++|||+|++|+||+.|+.|++||+.+| .+..|+.+
T Consensus 549 Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 549 YVATGSSDRTVRLWDVSTG--NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred ccccCCCCceEEEEEcCCC--cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 9999999999999999999 589999999999999999999999999999999999999998 66555543
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2e-18 Score=184.03 Aligned_cols=127 Identities=21% Similarity=0.280 Sum_probs=116.4
Q ss_pred eecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (897)
Q Consensus 766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~ 841 (897)
-....||...+-+..|+|+|..|+|||-|.++|+||+. ..+.+.+||...|.||+|+|| .|+||+.||+|++||.+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 35678999999999999999999999999999999987 899999999999999999998 99999999999999999
Q ss_pred CCcceeEEEeeccCCCeEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 842 GSILHLIQQIREHTKAVTGLAILQ-----SGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 842 ~~~~~~i~~l~gH~~~V~slafsp-----dg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
++. +....|.||++.|++++|.| ..++|+|+|.||+|+|||+..+ ++..+.
T Consensus 188 tg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 188 TGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred CCC-cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence 986 66789999999999999976 4689999999999999999988 555543
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.9e-18 Score=181.88 Aligned_cols=137 Identities=19% Similarity=0.280 Sum_probs=122.4
Q ss_pred CCCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-
Q 002641 756 QGLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR- 823 (897)
Q Consensus 756 ~~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp- 823 (897)
.+..|.+.++|| ++++|...+-++.++|||++||||+.||+|++||.. +..+.+.||+..|++++|.|
T Consensus 132 tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 132 TGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred ecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence 355778889996 578999999999999999999999999999999965 88999999999999999987
Q ss_pred ----C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 824 ----D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 824 ----d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
. +|+|+|.||+|+|||+..+ .++..+.||+.+|+|+.|--+ .+|+|||.|+|||+|+...| ....|+.+
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~--~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGH 287 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLG--TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGH 287 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCc--eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhccc
Confidence 2 8999999999999999988 689999999999999999533 58999999999999999998 66666543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=5.8e-18 Score=182.87 Aligned_cols=136 Identities=19% Similarity=0.172 Sum_probs=120.2
Q ss_pred CCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 757 GLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
+..|.+..+|+ .++||...+.-+.|.|+|++|+|+|.|.+-++||+. ..+....||...|++++|+||
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS 316 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS 316 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence 34556666664 366788888888899999999999999999999997 555567899999999999998
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
+++|||.|..-||||++++ +++-.+.||.+.|.+|+|+|+|..|+|||.|+++||||++.. ++.+++.
T Consensus 317 L~~tGGlD~~~RvWDlRtg--r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA 385 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTG--RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA 385 (459)
T ss_pred eeeccCccchhheeecccC--cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc
Confidence 9999999999999999999 689999999999999999999999999999999999999987 6555543
No 5
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=3.4e-17 Score=176.14 Aligned_cols=173 Identities=17% Similarity=0.106 Sum_probs=144.1
Q ss_pred hhHHHHHHhhhhhhcccCCCcchhhhhhh-----------ccc-------cccCCCCCCCCCc-eeeeecccccccceeE
Q 002641 718 GAARVSLLKRFISAFKSANDIDDRALSLL-----------ALN-------SFAQDPQGLRDIN-IHMKDIMKGLRELRKY 778 (897)
Q Consensus 718 ~~a~s~Lls~lv~~L~~~~~leervLA~l-----------sl~-------s~~~~~~~~~~~~-~~i~~~l~~~~~~~~~ 778 (897)
...+..++.++..-+.+...++++.|.++ |+| ++..|+.+..... ...|+++..|...+++
T Consensus 150 ~n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~qt~qil~~htdEVWf 229 (519)
T KOG0293|consen 150 NNERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWF 229 (519)
T ss_pred chhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhhcccCcccCCchhhhhHhhCCCcEEE
Confidence 34677888888888888888888877655 222 3444555555544 6788999999999999
Q ss_pred eeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641 779 SPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (897)
Q Consensus 779 ~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l 851 (897)
+.|+++|+++||+|.|.+..+|++. +..+++.||..+|..+.|||| ++++|+.|..+++||+.++. +.+.+
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd--~~~~y 307 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD--LRHLY 307 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch--hhhhc
Confidence 9999999999999999999999974 678999999999999999997 99999999999999999985 33333
Q ss_pred -eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceee
Q 002641 852 -REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIF 892 (897)
Q Consensus 852 -~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l 892 (897)
.+|...+++++|.|||..+++||.|++|..||+.+..+...
T Consensus 308 ~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W 349 (519)
T KOG0293|consen 308 PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW 349 (519)
T ss_pred ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc
Confidence 34568999999999999999999999999999887654433
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.72 E-value=5.2e-17 Score=167.84 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=118.7
Q ss_pred CCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCC--CCcEEEEEEeCC-
Q 002641 757 GLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSE--NGKVLSIACFRD- 824 (897)
Q Consensus 757 ~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH--~~~V~sV~fspd- 824 (897)
+..|.+.++||. +.||..-+-.+.+++|...|+|||.|++|++||+- .+..+...+ .+.|.||.|+|+
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 346777888875 44677888888899999999999999999999987 666666655 789999999995
Q ss_pred ---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 825 ---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 825 ---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
+|+++|.|++||+||+++. +..+.|.||++.|+.+++||||...+||+.||.+.+||++.+ .+..|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~--~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~ 231 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNC--QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE 231 (315)
T ss_pred CCcEEEEccCCceEEEEccCCc--chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence 9999999999999999997 577899999999999999999999999999999999999998 665554
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.71 E-value=6.7e-17 Score=166.98 Aligned_cols=127 Identities=25% Similarity=0.282 Sum_probs=111.5
Q ss_pred eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd 839 (897)
.....++||..++.-+..++||++.+|+|+|+++++||+. +..+.|.||...|.+|+|++| +++|||.|.||++||
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 3345678888999889999999999999999999999987 888899999999999999997 999999999999999
Q ss_pred CCCCcceeEEEeecc--CCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 840 GRGSILHLIQQIREH--TKAVTGLAILQS--GEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 840 ~~~~~~~~i~~l~gH--~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
+.++ +..+...+ ++.|+|+.|+|+ .-+|+++|.|+++|+||+++. ..+.|.
T Consensus 134 t~g~---ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 134 TLGV---CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred eccc---EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence 9987 45555444 889999999998 679999999999999999987 444443
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.70 E-value=5.1e-17 Score=187.39 Aligned_cols=129 Identities=22% Similarity=0.339 Sum_probs=118.6
Q ss_pred CCCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 757 GLRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
+..|.+-.+| .+.-||..-+.++.|.|+..|+++||.|++|++||+. ..++.|.||+++|.+|+|||+
T Consensus 511 as~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred cCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc
Confidence 3566676777 3567888889999999999999999999999999986 889999999999999999997
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+|+||+.||.|++||+.++ ..+..+.+|++.|.++.|+.+|..|++||.|.+|++||+...
T Consensus 591 ~LaSg~ed~~I~iWDl~~~--~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 YLASGDEDGLIKIWDLANG--SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eEeecccCCcEEEEEcCCC--cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999998 578899999999999999999999999999999999998764
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.5e-16 Score=181.69 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=118.2
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~ 844 (897)
...|..-++++.++++.+.|||||.|++.+||++. +...++.||+..|+||.|+|. .++|+|.|+|||+|.+.+.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f- 537 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF- 537 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-
Confidence 34567888999999999999999999999999998 899999999999999999996 9999999999999999998
Q ss_pred ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecccC
Q 002641 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVVD 897 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~d 897 (897)
.|+.+|.||+.+|..+.|-.+|+.|+|++.||-|++||++++ |.+++-.+-|
T Consensus 538 -SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 538 -SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred -eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 699999999999999999999999999999999999999999 8888766543
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=1.1e-16 Score=173.06 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=115.8
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~ 844 (897)
.+||...+..+.+.+||..++|||.|..-+|||++ .++-.+.||..+|.+|+|+|+ .++|||.|+++||||++..
T Consensus 299 QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r- 377 (459)
T KOG0272|consen 299 QEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR- 377 (459)
T ss_pred hcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-
Confidence 57899999999999999999999999999999998 888899999999999999998 9999999999999999988
Q ss_pred ceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 845 LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
..+.++.+|++-|+.|.|+| .|.+|+|+|.|++++||..++. ++++|..
T Consensus 378 -~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 378 -SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred -ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 46899999999999999999 6899999999999999999988 7666654
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=7e-16 Score=164.28 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=121.3
Q ss_pred CCCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--
Q 002641 756 QGLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-- 823 (897)
Q Consensus 756 ~~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-- 823 (897)
.+..|.++.+|+ ...+|...+..+....||..+||+|.|.++++|-+. ++...+.+|..+|-|++|-|
T Consensus 210 S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~ 289 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPES 289 (406)
T ss_pred ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccc
Confidence 456777778885 456788889999999999999999999999999987 67889999999999999975
Q ss_pred ----------C-----EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-
Q 002641 824 ----------D-----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF- 887 (897)
Q Consensus 824 ----------d-----~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~- 887 (897)
+ .+++||.|++||+||+.++ .++.++.||..+|..++|+|.|++|+|+..|+++++||++++
T Consensus 290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred cCcchhhccCCCCCccEEEeecccceEEEEeccCC--eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 1 7899999999999999999 699999999999999999999999999999999999999998
Q ss_pred cceee
Q 002641 888 TYAIF 892 (897)
Q Consensus 888 ~l~~l 892 (897)
+..++
T Consensus 368 cmk~~ 372 (406)
T KOG0295|consen 368 CMKTL 372 (406)
T ss_pred eeecc
Confidence 65544
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.66 E-value=6.4e-16 Score=180.23 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=112.3
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
+.+|...+.-+.+++++.++++|+.|+++++||+. ..++++.||...|++++|+|+ +++||+.|++||+||++++
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 36788999999999999999999999999999994 688999999999999999996 9999999999999999997
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT 888 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~ 888 (897)
.++..+.+|.+.|++++|+++|++|+++|.|++|++||+.++.
T Consensus 279 --~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 279 --ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred --eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 6899999999999999999999999999999999999999995
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.65 E-value=6.9e-16 Score=163.63 Aligned_cols=138 Identities=20% Similarity=0.291 Sum_probs=123.0
Q ss_pred CCCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC-
Q 002641 756 QGLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD- 824 (897)
Q Consensus 756 ~~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd- 824 (897)
.+..|.+..+||+ +.||...+.-+.+++.--|++|++.|+.|+-||+. +.++.+.||-+.|+|++.+|.
T Consensus 168 tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl 247 (460)
T KOG0285|consen 168 TGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL 247 (460)
T ss_pred ecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc
Confidence 4567778888874 56677788888888888899999999999999997 899999999999999999994
Q ss_pred -EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 825 -~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
.|+|||.|.++||||+++. ..+..+.||+..|.+|.+.|..-.++|||.|+|||+||++.| ...++..+
T Consensus 248 dvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 248 DVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred eeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 9999999999999999998 579999999999999999988888999999999999999998 66665543
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.65 E-value=9.7e-16 Score=159.26 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=97.5
Q ss_pred eeecccccEEEEecCCCCeEEEeCC--------cceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEE
Q 002641 779 SPLAFEMVKVLSNGHDSSADFWNHR--------ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 779 ~~~s~d~~~LaSgs~DgtIklWd~~--------~~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
++++|.|+++|.|+.|....||++. .+.+.+.||++.+.|..|-+| +|+|||.|.|+-+||+.++ +.+.
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g--~~~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG--QQTQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc--eEEE
Confidence 4455555556666666555555543 255668899999999999998 9999999999999999999 6899
Q ss_pred EeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 850 QIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 850 ~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
.|.||++.|.+++++| +++.++||+.|++.++||++.+ +.++|..+
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence 9999999999999999 8999999999999999999999 99998754
No 15
>PTZ00421 coronin; Provisional
Probab=99.65 E-value=1.7e-15 Score=176.96 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=109.6
Q ss_pred ccccccceeEeeecc-cccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeE
Q 002641 769 MKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI 835 (897)
Q Consensus 769 l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtI 835 (897)
+.+|...+..+.+++ ++.+|+|||.|++|++||+. ..+..+.+|...|.+++|+|+ +|+||+.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 568888888888888 88999999999999999985 246788999999999999984 89999999999
Q ss_pred EEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 836 rlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
++||+.++ ..+..+.+|.+.|.+++|+|+|+.|++|+.|++|++||++++ .+..+
T Consensus 151 rIWDl~tg--~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 151 NVWDVERG--KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred EEEECCCC--eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 99999987 578889999999999999999999999999999999999988 44444
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=158.96 Aligned_cols=129 Identities=20% Similarity=0.353 Sum_probs=118.3
Q ss_pred ceeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEE
Q 002641 762 NIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIK 836 (897)
Q Consensus 762 ~~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIr 836 (897)
.......+.+|.....++.|-+ ...|++||-|.++-+||++ +.+..|.||.+.|.++.++| + .++||+.|++.+
T Consensus 134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 3566677899999999998887 5578899999999999998 88999999999999999999 4 999999999999
Q ss_pred EEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 837 lWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
+||++.+ .++++|.||...|++|.|.|+|.-|++||.|+++|+||++.. ++..|.
T Consensus 213 lWD~R~~--~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 213 LWDVRSG--QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred eeeccCc--ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 9999998 699999999999999999999999999999999999999997 776665
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.1e-15 Score=174.57 Aligned_cols=124 Identities=21% Similarity=0.281 Sum_probs=110.3
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~ 844 (897)
..||-.......++|||.++|+|+.||+|||||.. -+..+|..|++.|+.+.|+.+ .++|.|.|||||.||++...
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 45778889999999999999999999999999998 599999999999999999975 99999999999999987543
Q ss_pred ------------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 002641 845 ------------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVR 882 (897)
Q Consensus 845 ------------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlW 882 (897)
.+.+..+.||.++|.+++|+|+|..|+|||+|+|||+|
T Consensus 426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 45566778999999999999999999999999999999
Q ss_pred eCCCc--cceee
Q 002641 883 SNDSF--TYAIF 892 (897)
Q Consensus 883 di~~~--~l~~l 892 (897)
|+-.. +..++
T Consensus 506 ~if~s~~~vEtl 517 (893)
T KOG0291|consen 506 DIFSSSGTVETL 517 (893)
T ss_pred EeeccCceeeeE
Confidence 99543 44444
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.63 E-value=1.3e-15 Score=166.53 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=114.0
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC-----------EEEEEecCCe
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-----------KIFSGHSDGT 834 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-----------~L~Sgs~Dgt 834 (897)
...||...+....+.+.|..|+|+|+|+|++||+.+ ...+.+.+|...|+.+.|+|+ .+++++.|++
T Consensus 354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 456789999999999999999999999999999987 788999999999999999982 8999999999
Q ss_pred EEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 835 IrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
|++||+..+ .++++|..|+.+|++|+|+|+|++++||+.||.|.+|+++++ ..+.+
T Consensus 434 V~lwdv~~g--v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 434 VKLWDVESG--VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred EEEEEccCC--ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 999999998 689999999999999999999999999999999999999998 44443
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.63 E-value=6.4e-16 Score=163.91 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=120.2
Q ss_pred eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd 839 (897)
.+..++.||.+.+.++.+.|...+++|||.|++|+|||+. ++.-++.||-..|..|++|+. ++||++.|+.||.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3447889999999999999999999999999999999987 888899999999999999986 999999999999999
Q ss_pred CCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 840 ~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
+... +.++.+.||-..|.|++.+|.-+.|++||.|.++|+||+++. .+.+|..
T Consensus 222 Le~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 222 LEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred chhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 9988 588999999999999999999999999999999999999998 7776654
No 20
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.62 E-value=3.9e-16 Score=135.09 Aligned_cols=72 Identities=44% Similarity=0.831 Sum_probs=62.0
Q ss_pred CCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (897)
Q Consensus 160 l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~ 232 (897)
+|++|.||||+++|.|||+++|||+|||.||.+|+..+...||.|++++....+ .||..|++.|+.|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l-~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL-IPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS-EE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc-eECHHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999999999877899999999999999 599999999999998874
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8.7e-16 Score=172.25 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=115.5
Q ss_pred CCCCceeee---------ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--
Q 002641 758 LRDINIHMK---------DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-- 823 (897)
Q Consensus 758 ~~~~~~~i~---------~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-- 823 (897)
..|.++.+| ++.+||...+-.+.+.| |.+.+||+|.|+|||||.+. .+..+++||...|.||.|.+
T Consensus 116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG 195 (794)
T ss_pred CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence 345556666 47889888887777776 78899999999999999998 78899999999999999986
Q ss_pred C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 824 D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 824 d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
| +|+||+.|.+|||||.++. .|++++.||+..|+.+.|+|.=..++|||.|||+|||+..|-
T Consensus 196 dkpylIsgaDD~tiKvWDyQtk--~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWDYQTK--SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred CcceEEecCCCceEEEeecchH--HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 3 9999999999999999997 699999999999999999999999999999999999998876
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=2.6e-15 Score=151.87 Aligned_cols=128 Identities=21% Similarity=0.286 Sum_probs=117.3
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
.++..++..+....++.+|+|.++++.|++|++|+.. .+++++.||...|..++.+.| .|++|+.|..|.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 4566778899999999999999999999999999976 899999999999999998876 999999999999999999
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc---cceeeeccc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF---TYAIFIQVV 896 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~---~l~~l~~~~ 896 (897)
+ +.++.|+||.+.|+.++|+.+...++|||.|.++|+||.++. .+|.|-+..
T Consensus 91 G--kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 91 G--KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred C--eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 9 689999999999999999999999999999999999999986 666665543
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=7.2e-15 Score=151.54 Aligned_cols=122 Identities=22% Similarity=0.189 Sum_probs=113.8
Q ss_pred eecccccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEE
Q 002641 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVW 838 (897)
Q Consensus 766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlW 838 (897)
-.+++||...+.++.++.+|.+||++|.|++|.||.+. .+..++++|+..|--|.|+| ++|+|+|.|+|||+|
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~ 177 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVY 177 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEE
Confidence 46789999999999999999999999999999999986 79999999999999999999 599999999999999
Q ss_pred eCC-CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 839 TGR-GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 839 d~~-~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+-. .+...+++++.||++.|++++|++.|..++|++.|++++||-..+.
T Consensus 178 ~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 178 RDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred eecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 988 5556889999999999999999999999999999999999985543
No 24
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.60 E-value=1.4e-15 Score=163.85 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=112.4
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
..|...++...+++....++|+|.||+|+|||+. +...++.||.-.|.|++|+|. +++|||.|..||+||.+++
T Consensus 177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-- 254 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-- 254 (464)
T ss_pred HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--
Confidence 3444888999999999999999999999999987 666778999999999999996 9999999999999999999
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
.++.++.+|+..|..+.|+|+|++|+++|.|..++++|+++- .+.+++.
T Consensus 255 ~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~ 304 (464)
T KOG0284|consen 255 SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG 304 (464)
T ss_pred chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc
Confidence 699999999999999999999999999999999999999964 6666653
No 25
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.60 E-value=6.1e-16 Score=161.71 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=116.1
Q ss_pred eecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeecc-CCCCcEEEEEEeCC--EEEEEecCCeEEEEeC
Q 002641 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS-SENGKVLSIACFRD--KIFSGHSDGTIKVWTG 840 (897)
Q Consensus 766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~-gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~ 840 (897)
.+..--+...+.+..|+.|...+|||+.||.|++|.+. ++++.|. .|+..|+|+.|+.| .++|+|.|.++|+.-+
T Consensus 256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL 335 (508)
T ss_pred hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence 34444456788899999999999999999999999986 8888887 89999999999997 9999999999999999
Q ss_pred CCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 841 ~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
+.+ +++..|+||+..|+...|.+||++++|+|.||+|++|+.+++ |+++|+-
T Consensus 336 KSG--K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 336 KSG--KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred ccc--hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 999 689999999999999999999999999999999999999998 8888863
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=167.23 Aligned_cols=136 Identities=21% Similarity=0.297 Sum_probs=119.4
Q ss_pred CCCCceeeee---------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 758 LRDINIHMKD---------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 758 ~~~~~~~i~~---------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
..|.+.++|+ ++.+|...+..+.|+++|+.++||+.|++|+|||++ ++..++.+|.+.|.+++|+++
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence 4556666665 456888999999999999999999999999999998 899999999999999999997
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCC--eEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA--VTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~--V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
.|++++.||+|++||+.++...+...+.++... |+++.|+|+|.++++++.|+++++||+..+ ....+.
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 999999999999999999842256778888776 999999999999999999999999999987 555544
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.57 E-value=2.5e-15 Score=161.98 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=115.2
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCC-CcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSEN-GKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~-~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
-++..|...+....++.++.+++||+.||.||+|+.. +.++.+++|. ..|.+++|+|+ .|+|||.||+|+|||...
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 4677888999999999999999999999999999998 7777788875 89999999995 999999999999999997
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
. +....+.||.-.|.|++|+|....++|||.|..|++||.++| ++.++..+
T Consensus 212 ~--kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H 263 (464)
T KOG0284|consen 212 P--KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH 263 (464)
T ss_pred C--chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc
Confidence 7 356678999999999999999999999999999999999999 88776544
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.57 E-value=2e-15 Score=159.35 Aligned_cols=115 Identities=17% Similarity=0.284 Sum_probs=106.9
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCc
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~ 844 (897)
.++.||...++++.++ .++|+|+|.|.+|++|++. ..++++.||+..|.|+.|...+++|||+|.|||+||+..|
T Consensus 314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G- 390 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG- 390 (499)
T ss_pred HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEecccc-
Confidence 3678899988888776 5699999999999999988 8999999999999999999999999999999999999998
Q ss_pred ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+++.+.||..-|.|+.|. .+.++||+.||+|++||+.++
T Consensus 391 -~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 391 -ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -HHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence 6999999999999999996 678999999999999999876
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=147.19 Aligned_cols=121 Identities=17% Similarity=0.301 Sum_probs=107.4
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
...++|...+..++|..+|++++|||.||++||||++ ......-.|.++|.+|..+|+ .|++|..+|.|++||+...
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 3567888899999999999999999999999999998 333334467799999999997 8999999999999999876
Q ss_pred c-----------------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCC
Q 002641 844 I-----------------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (897)
Q Consensus 844 ~-----------------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D 876 (897)
. +.++..|+.|++.+..+-+|||+++|+++|.|
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 3 56677889999999999999999999999999
Q ss_pred CcEEEEeCCCc
Q 002641 877 KTARVRSNDSF 887 (897)
Q Consensus 877 ~tIrlWdi~~~ 887 (897)
++++||+..+-
T Consensus 237 ktv~iwn~~~~ 247 (311)
T KOG0315|consen 237 KTVKIWNTDDF 247 (311)
T ss_pred ceEEEEecCCc
Confidence 99999998875
No 30
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=6.8e-15 Score=171.30 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=106.0
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCCc------------------------------------------
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE------------------------------------------ 804 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~------------------------------------------ 804 (897)
.+...|.+.++.+.|++||+||||||.|+.|+||.+..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 34448899999999999999999999999999997421
Q ss_pred --------------------ceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEE
Q 002641 805 --------------------LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (897)
Q Consensus 805 --------------------~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slaf 863 (897)
++..|.||.+.|..+.||.+ +|+|.|.|.|||||++... .|+..|. |...|+||+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~--~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK--ECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc--ceeeEEe-cCCeeEEEEe
Confidence 44556689999999999997 9999999999999999976 6889887 9999999999
Q ss_pred cc-CCCEEEEEeCCCcEEEEeCCCcc
Q 002641 864 LQ-SGEMLYSGSLDKTARVRSNDSFT 888 (897)
Q Consensus 864 sp-dg~~L~SgS~D~tIrlWdi~~~~ 888 (897)
+| |.++|+|||.|+.||||++....
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCe
Confidence 99 56999999999999999997653
No 31
>PTZ00420 coronin; Provisional
Probab=99.57 E-value=5.3e-14 Score=165.76 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=104.8
Q ss_pred cccccccceeEeeeccc-ccEEEEecCCCCeEEEeCCc----------ceeeccCCCCcEEEEEEeCC---EEEEEecCC
Q 002641 768 IMKGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD---KIFSGHSDG 833 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d-~~~LaSgs~DgtIklWd~~~----------~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg 833 (897)
.+.+|...+..+.++++ +.+|+|||.|++|+|||+.. .+..+.+|.+.|.+++|+|+ +++|||.||
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 46788888888888885 88999999999999999851 23467899999999999995 578999999
Q ss_pred eEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 834 tIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
+|++||++++. .+..+. |...|++++|+|+|.+|++++.|++|++||++++ .+.++.
T Consensus 149 tIrIWDl~tg~--~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 149 FVNIWDIENEK--RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred eEEEEECCCCc--EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999999884 455554 6678999999999999999999999999999998 555554
No 32
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.56 E-value=2.7e-14 Score=153.01 Aligned_cols=126 Identities=19% Similarity=0.168 Sum_probs=108.2
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC---------------------------cceeeccCCCCcEEEEE
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---------------------------ELVHVDSSENGKVLSIA 820 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---------------------------~~l~~l~gH~~~V~sV~ 820 (897)
...||...+..+....+|.+++|||+|.++++|+.. ..+-++.||+.+|.+|.
T Consensus 188 ~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 188 VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 355999999999999999999999999999999921 16677889999999999
Q ss_pred EeCC-EEEEEecCCeEEEEeCCCCc------------------------------------------ceeEEEeeccCCC
Q 002641 821 CFRD-KIFSGHSDGTIKVWTGRGSI------------------------------------------LHLIQQIREHTKA 857 (897)
Q Consensus 821 fspd-~L~Sgs~DgtIrlWd~~~~~------------------------------------------~~~i~~l~gH~~~ 857 (897)
|++. .++|+|.|+|||+||+.++. ....++|.||++.
T Consensus 268 w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 268 WSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW 347 (423)
T ss_pred EcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence 9975 99999999999999998765 2234678899999
Q ss_pred eEEEEEccCC-CEEEEEeCCCcEEEEeCCCc--cceeee
Q 002641 858 VTGLAILQSG-EMLYSGSLDKTARVRSNDSF--TYAIFI 893 (897)
Q Consensus 858 V~slafspdg-~~L~SgS~D~tIrlWdi~~~--~l~~l~ 893 (897)
|.++.|+|.. ..|+|||.|+++++||+|+. .+-.+.
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999999975 78999999999999999985 444443
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.56 E-value=1.7e-14 Score=150.58 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=110.0
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
.+.||...+....|.|+|..+||||.|..|-+|++. +-..+++||.++|+.+.|++| .++|+|.|.+|+.||+++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 467889999999999999999999999999999964 667778899999999999997 999999999999999999
Q ss_pred CcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
+ +.+..+++|++-|+++.-+.-| ..+.||+.|+|+|+||+++. .+++|
T Consensus 122 G--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 122 G--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred c--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 9 6899999999999999854445 67889999999999999976 55555
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.56 E-value=3.5e-15 Score=157.57 Aligned_cols=135 Identities=21% Similarity=0.310 Sum_probs=111.5
Q ss_pred CCCCCCceeeeecccccccceeEee-------ecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC
Q 002641 756 QGLRDINIHMKDIMKGLRELRKYSP-------LAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR 823 (897)
Q Consensus 756 ~~~~~~~~~i~~~l~~~~~~~~~~~-------~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp 823 (897)
.+..|.++.+||+.+| ...+.+.. .-....+++|+|.|.+|.+||+. .+.+++.||...|..|.|+.
T Consensus 252 sGSSDsTvrvWDv~tg-e~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTG-EPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred ecCCCceEEEEeccCC-chhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence 3567778888887666 32322222 22346688999999999999976 57788889999999999998
Q ss_pred CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 824 d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
.+++|+|.|.|||+|++.+. .+++++.||.-.|.|+.+. |+.++|||.|.|||+||+..| ++..|..+
T Consensus 331 kyIVsASgDRTikvW~~st~--efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGH 399 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTC--EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH 399 (499)
T ss_pred ceEEEecCCceEEEEeccce--eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhch
Confidence 89999999999999999998 6899999999999999885 899999999999999999999 88777654
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.6e-14 Score=160.58 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=112.2
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~ 842 (897)
.+.|.+..+.+..-|..-+++|+|+|-+||+||.. .+.++|.||...|++|+|+|. .++|||.|+|||||.+..
T Consensus 93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs 172 (794)
T KOG0276|consen 93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS 172 (794)
T ss_pred eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence 44566777777777777799999999999999997 789999999999999999993 999999999999999988
Q ss_pred CcceeEEEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSG--EMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg--~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
. .+..++.||.+.|+|+.|-+.| -+|+||+.|.+|+|||..+. |+++|..+
T Consensus 173 ~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH 226 (794)
T KOG0276|consen 173 P--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH 226 (794)
T ss_pred C--CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc
Confidence 7 5789999999999999998866 59999999999999999998 98888754
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=3.3e-14 Score=162.81 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=118.6
Q ss_pred CCCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 757 GLRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
+.+|.+..+| .++.||++.++.+.|++..+.++|+|.|+|||||.+. .++++|.||+..|.-+.|-.+
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 4566666666 4789999999999999999999999999999999998 899999999999999999764
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+|+||+.||-||+|++++. .|+.++.+|++.|++++.+|.+..++||+.||.|.+|.=.|.
T Consensus 561 qliS~~adGliKlWnikt~--eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTN--ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred EEEeccCCCcEEEEeccch--hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999998 699999999999999999999999999999999999965443
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.52 E-value=9.7e-14 Score=153.78 Aligned_cols=121 Identities=19% Similarity=0.320 Sum_probs=109.2
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeecc---CCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS---SENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~---gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd 839 (897)
.....|..+++++.++|||.+++|.|.||+|.+||=. +.+..+. +|++.|++++|+|| +++|+|.|.++|+||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 4566788999999999999999999999999999955 6666666 89999999999998 999999999999999
Q ss_pred CCCCc-----------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCc
Q 002641 840 GRGSI-----------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT 878 (897)
Q Consensus 840 ~~~~~-----------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~t 878 (897)
+.+.+ ...+..+.||.+.|+++..+|+|.+|+|||.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 98765 2344567899999999999999999999999999
Q ss_pred EEEEeCCCc
Q 002641 879 ARVRSNDSF 887 (897)
Q Consensus 879 IrlWdi~~~ 887 (897)
|.-||..+|
T Consensus 344 I~~W~~~~g 352 (603)
T KOG0318|consen 344 INSWDSGSG 352 (603)
T ss_pred EEEEecCCc
Confidence 999999988
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.1e-14 Score=161.94 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=110.4
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~ 844 (897)
...|.+.++-+.|-+..-.++|||+|.+|+||+.+ +++.++.||-+.|..+.|++. .++|+|.|-|||||+..++
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr- 125 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR- 125 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-
Confidence 45678888888999999999999999999999998 899999999999999999997 9999999999999999998
Q ss_pred ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.++..+.||+-.|.|..|+|....++|+|.|.||||||+.+-
T Consensus 126 -~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 126 -KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred -ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 699999999999999999999999999999999999999764
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.50 E-value=2.4e-14 Score=157.48 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=109.3
Q ss_pred ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeC
Q 002641 767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG 840 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~ 840 (897)
..+.||...+.+..+.+ .+++++|||.|+.|+||++- .+++++.||+.+|..++|+.+ .|+|+|.|++||+||+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 55688888888877776 89999999999999999975 899999999999999999986 9999999999999999
Q ss_pred CCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 841 RGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 841 ~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
.+| +++..|. -...++|+.|.|++ +.|++|+.|+.|+.||++++ .++.+.+.
T Consensus 288 ETG--~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 288 ETG--QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred ccc--eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 999 4655554 23356899999998 99999999999999999999 65655443
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.1e-13 Score=160.54 Aligned_cols=144 Identities=18% Similarity=0.236 Sum_probs=125.6
Q ss_pred ccCCCCCCCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC----c--------------
Q 002641 751 FAQDPQGLRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----E-------------- 804 (897)
Q Consensus 751 ~~~~~~~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~-------------- 804 (897)
+.|.-....|.|+++|. +++||...+-+..|-|....++|+|.|.+|||||+. +
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 33444567889999984 688999999898899988999999999999999975 0
Q ss_pred -------------ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCE
Q 002641 805 -------------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (897)
Q Consensus 805 -------------~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~ 869 (897)
+.+++.||+..|.-++|+|. +|+||+.|..||+|.....+.-.+.+.+||.+.|+|+-|+|..+.
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 34567799999999999996 999999999999999986554557889999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 870 LYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 870 L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
++|.|.|++|||||+... .+++|++
T Consensus 265 IlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred eEecCCCccEEEEecccccceeeeec
Confidence 999999999999999988 8888865
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.8e-13 Score=138.91 Aligned_cols=124 Identities=17% Similarity=0.224 Sum_probs=112.5
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC-
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG- 842 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~- 842 (897)
.+|++.++.++++|.|++|++||.|.++.||.-. +++.++.||.+.|-||+|+++ +||+||.|++|-+|.+..
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 4688999999999999999999999999999854 899999999999999999986 999999999999999984
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-Cc---cceeee
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND-SF---TYAIFI 893 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~-~~---~l~~l~ 893 (897)
+++.++..+.+|++.|--+.|+|....|+|+|.|.|||+|+-. .+ +.++|.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~ 192 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD 192 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence 3578899999999999999999999999999999999999876 33 555554
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.49 E-value=4.1e-14 Score=144.23 Aligned_cols=131 Identities=20% Similarity=0.266 Sum_probs=102.3
Q ss_pred CCCCCceeeeecccc-------cccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-C-
Q 002641 757 GLRDINIHMKDIMKG-------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D- 824 (897)
Q Consensus 757 ~~~~~~~~i~~~l~~-------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp-d- 824 (897)
...|.+..+|+.+.| |+.++..+.|+.|.++|++|+.++.+||+|++ -....+.+|.+.|..+.|.. |
T Consensus 77 aaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~ 156 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK 156 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence 345566677766554 56788888888888888888888888888876 34455678888888888865 3
Q ss_pred EEEEEecCCeEEEEeCCCCc------------------------------------------------------------
Q 002641 825 KIFSGHSDGTIKVWTGRGSI------------------------------------------------------------ 844 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~------------------------------------------------------------ 844 (897)
.|+|.+.|++||+||.+++.
T Consensus 157 ~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 157 CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK 236 (334)
T ss_pred eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence 77777888888888888765
Q ss_pred -------------------ceeEEEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 -------------------LHLIQQI-REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 -------------------~~~i~~l-~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
...+..+ +||-++|.||.|+|||...+|||.|||||+|.+..+
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 1222333 789999999999999999999999999999998776
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1.9e-14 Score=150.63 Aligned_cols=126 Identities=26% Similarity=0.328 Sum_probs=108.7
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cc--------eeeccCCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL--------VHVDSSENGKVLSIACFRD--KIFSGHSDGTI 835 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~--------l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI 835 (897)
+.-|.+.-+.+..|+|||.+++|||.||-|.+||+. ++ ...|--|..+|.|+.|+.| +++||+.||.|
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 334445566778899999999999999999999975 22 2233347899999999998 99999999999
Q ss_pred EEEeCCCCcceeEEEee-ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 836 KVWTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 836 rlWd~~~~~~~~i~~l~-gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
|+|.+.++ .|++.|. .|++.|+|+.|+.|+..+.|+|.|.++|+--+++| ++..|+.+
T Consensus 288 KvWri~tG--~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 288 KVWRIETG--QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred EEEEEecc--hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc
Confidence 99999999 6888887 89999999999999999999999999999999999 77777653
No 44
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=7e-14 Score=160.78 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=103.4
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeE
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLI 848 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i 848 (897)
....+.+++.+..+|+|||.||+||+||++ +...++.+....|..|+|+|. .|++++..|.+++||++... ++.
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-r~~ 213 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-RCE 213 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-hHH
Confidence 455667778899999999999999999998 777888888889999999983 99999999999999999875 778
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
..|..|++.|.|+.|+|++.+|+|||.|++|+|||+.++
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 889999999999999999999999999999999999865
No 45
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.48 E-value=1.9e-13 Score=149.96 Aligned_cols=114 Identities=21% Similarity=0.275 Sum_probs=101.1
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc------
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI------ 844 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~------ 844 (897)
.-++...++.+|..||+|+.||.+++|+.. ..+.++.-|+++|+++.|+.+ +|+|++-||++-+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 445667778889999999999999999988 888899999999999999975 99999999999999997664
Q ss_pred ---------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 ---------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ---------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
..++.+|.||.+.|.++.|+|.|..|+|+|.|+|++||++..+
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 3455688899999999999999999999999999999998765
No 46
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.47 E-value=4.6e-14 Score=118.59 Aligned_cols=63 Identities=44% Similarity=0.879 Sum_probs=58.8
Q ss_pred cccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHH
Q 002641 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~ 227 (897)
+|.||||+++|.|||+++|||+||+.||.+|+.. ...||.|+++++...+ .+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l-~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDL-IPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhc-eeCHHHHHHHHhC
Confidence 5889999999999999999999999999999986 5689999999988889 5999999999976
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.46 E-value=1e-12 Score=134.30 Aligned_cols=134 Identities=21% Similarity=0.217 Sum_probs=114.2
Q ss_pred CCCceeeeecccc-c--------ccceeEeeecccccEEEEecCCCCeEEEeCC--------cceeeccCCCCcEEEEEE
Q 002641 759 RDINIHMKDIMKG-L--------RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------ELVHVDSSENGKVLSIAC 821 (897)
Q Consensus 759 ~~~~~~i~~~l~~-~--------~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------~~l~~l~gH~~~V~sV~f 821 (897)
+...+.+||.... + ...+....+.+||.+++.+..-|...+|++- +.+..++.|++.+....+
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLL 223 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEE
Confidence 3344778876443 1 1345566778899999999999999999963 577788999999999999
Q ss_pred eCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 822 FRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 822 spd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
||| +|+++|.|.+++||+..+. ++....+.||..+|+.++||.||++|++||.|+++|+||+..+ ....+.
T Consensus 224 SPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 224 SPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred CCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 998 9999999999999999987 5777889999999999999999999999999999999999998 554443
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=3.4e-13 Score=136.66 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=112.4
Q ss_pred CCCCCceeeeecccc--------cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 757 GLRDINIHMKDIMKG--------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~~~l~~--------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
+..+.+..+|.+++| |...+.-...+.|...++||+.|+.|.+||+. +..+.+.||.+.|..|.|+.+
T Consensus 35 cGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS 114 (307)
T KOG0316|consen 35 CGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS 114 (307)
T ss_pred cCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcce
Confidence 456788899977665 33333333444577889999999999999987 899999999999999999986
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT 888 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~ 888 (897)
.++|||.|.++|+||.+.....+++.+..-+..|.++.+. +..|+.||.||++|.||++.|.
T Consensus 115 Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 115 VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce
Confidence 9999999999999999998888999999999999999886 7789999999999999999883
No 49
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.44 E-value=5.2e-13 Score=139.70 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=96.3
Q ss_pred ccceeEeeecc-cccEEEEecCCCCeEEEeCCc----ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641 773 RELRKYSPLAF-EMVKVLSNGHDSSADFWNHRE----LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 773 ~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~~----~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
.+.+..+.|+| ....++.||+|++||+|++.. .-+....|.++|.+++|+.| .+++|+.|+.+++||+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ- 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence 35566677787 566777999999999999872 23455679999999999987 99999999999999999984
Q ss_pred eeEEEeeccCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCCc
Q 002641 846 HLIQQIREHTKAVTGLAILQSGE--MLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~--~L~SgS~D~tIrlWdi~~~ 887 (897)
+..+..|..+|.++.|-+... .|++||+|+|||+||++..
T Consensus 106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 778889999999999987654 8999999999999999986
No 50
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.44 E-value=6.8e-13 Score=155.87 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=115.2
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcce
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
+.||...++...+...+.+++|||.|+++++||+. .+.+++.||.+.|.++...+..+.+||.|.+||+|++.++ .
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~--~ 322 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG--A 322 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCc--c
Confidence 78899999999998889999999999999999987 9999999999999999999999999999999999999988 6
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
+++.+.||+++|.++..+ +.++++||.|++|++||+.++ ++.++..+
T Consensus 323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH 370 (537)
T ss_pred eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC
Confidence 899999999999999997 889999999999999999998 88877654
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=5.8e-13 Score=136.44 Aligned_cols=117 Identities=16% Similarity=0.240 Sum_probs=99.0
Q ss_pred ccccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCC
Q 002641 769 MKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 769 l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~ 842 (897)
.+.|+..+..+..+. +...++++|+|++||+|+.. +.+.++.||+..|+..+|+| +.++|+|.||+.++||++.
T Consensus 100 ~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~ 179 (311)
T KOG0277|consen 100 FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS 179 (311)
T ss_pred HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC
Confidence 444565555555554 67778889999999999987 89999999999999999998 4999999999999999996
Q ss_pred CcceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.- +.. .+..|...+.|+.|+. +.+.+++|+.|+.||.||++.-
T Consensus 180 ~g-k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 180 PG-KFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred CC-cee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 52 333 3889999999999986 4689999999999999999875
No 52
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.43 E-value=4.8e-13 Score=143.36 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=97.5
Q ss_pred ccccccceeEeeecc-cccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641 769 MKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (897)
Q Consensus 769 l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~ 841 (897)
..+|...+.-..++| +...++|+|-||+|+|||++ +.--..+.|.+.|.-|.|+.+ +|+||+.||+++|||++
T Consensus 253 f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR 332 (440)
T KOG0302|consen 253 FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLR 332 (440)
T ss_pred ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhh
Confidence 445555555455554 67789999999999999997 222233789999999999986 89999999999999999
Q ss_pred CCc-ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 842 GSI-LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 842 ~~~-~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
.-+ .+++..|+-|+.+|+++.|+|. ...|+.+|.|.+|.+||+...
T Consensus 333 ~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 333 QFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred hccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 643 2678899999999999999996 467888889999999998643
No 53
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.43 E-value=7.7e-13 Score=137.73 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=100.2
Q ss_pred ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCCc--------------c---eeeccCCCCcEEEEEEeC-C--E
Q 002641 767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHRE--------------L---VHVDSSENGKVLSIACFR-D--K 825 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~~--------------~---l~~l~gH~~~V~sV~fsp-d--~ 825 (897)
++...|.+.++...+.+ +|++++||+.||.|-+||+.. + ..--.+|+..|.++.|.| | +
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 44555667777777665 688999999999999999751 1 011125788899999998 3 8
Q ss_pred EEEEecCCeEEEEeCCCCc------------------------------------------ceeEEEeeccCCCeEEEEE
Q 002641 826 IFSGHSDGTIKVWTGRGSI------------------------------------------LHLIQQIREHTKAVTGLAI 863 (897)
Q Consensus 826 L~Sgs~DgtIrlWd~~~~~------------------------------------------~~~i~~l~gH~~~V~slaf 863 (897)
+.|+|.|+++||||..+-+ ..+.+++.||++.|.+|.|
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 9999999999999988654 3445678899999999999
Q ss_pred ccCCC-EEEEEeCCCcEEEEeCCCc--cceeeec
Q 002641 864 LQSGE-MLYSGSLDKTARVRSNDSF--TYAIFIQ 894 (897)
Q Consensus 864 spdg~-~L~SgS~D~tIrlWdi~~~--~l~~l~~ 894 (897)
+|..+ .|++||.||+||+||++.. ++.++-+
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 99864 6889999999999999864 7776654
No 54
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.43 E-value=3.6e-13 Score=154.32 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=111.2
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
-.+.||+-.+.+...++|++.++|||.|++|++|-++ .+.+.+-+|+..|++|.|-|+ .++|||.||.||-||...
T Consensus 544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 3578999999999999999999999999999999776 899999999999999999997 899999999999999987
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
- ..++.+.||...|+|++.+|+|.+++|+|.|++||+|....
T Consensus 624 F--e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 624 F--EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred h--hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 6 68999999999999999999999999999999999998654
No 55
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=4.1e-13 Score=143.38 Aligned_cols=134 Identities=22% Similarity=0.232 Sum_probs=121.1
Q ss_pred CCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC--CE
Q 002641 759 RDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR--DK 825 (897)
Q Consensus 759 ~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp--d~ 825 (897)
.+.+.++|| .++||...+.-+.+...|++++++|.|-.+++||.. ++++...||...|.+|.|-| |+
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ 207 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDH 207 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCe
Confidence 455566664 577888888888899999999999999999999997 78888999999999999998 59
Q ss_pred EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
++|+|.|.+|+.|++.++ .++.+|.+|...|.-++.+.||.+++|+|.|.++++|-+.++ ++..|+.
T Consensus 208 ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~ 275 (406)
T KOG0295|consen 208 ILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE 275 (406)
T ss_pred eeecccccceeEEecccc--eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc
Confidence 999999999999999998 699999999999999999999999999999999999999998 7666654
No 56
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.43 E-value=7.7e-13 Score=155.43 Aligned_cols=134 Identities=22% Similarity=0.312 Sum_probs=112.0
Q ss_pred CCCCCCceeeeecccc--------cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCE
Q 002641 756 QGLRDINIHMKDIMKG--------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDK 825 (897)
Q Consensus 756 ~~~~~~~~~i~~~l~~--------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~ 825 (897)
.+..|.+..+|+..+| |...+.+. .....++++||.|.+|++|++. ..++++.+|.++|.+|..+.++
T Consensus 266 sgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~--~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~ 343 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTHSLQGHTSSVRCL--TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPL 343 (537)
T ss_pred EEecCCcEEeEecCCCcEEEEecCCCceEEEE--EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCE
Confidence 3556788889975444 33333322 2245678899999999999998 8999999999999999999889
Q ss_pred EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceeeec
Q 002641 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIFIQ 894 (897)
Q Consensus 826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l~~ 894 (897)
+++|+.||+|++||+.++ +++.++.||+.+|.++.+.+. .+++|||.|++|++||+++. ++.+|..
T Consensus 344 lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 344 LVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred EEEEecCceEEEEEhhhc--eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 999999999999999987 799999999999999988644 89999999999999999988 6666554
No 57
>PTZ00421 coronin; Provisional
Probab=99.42 E-value=2.3e-12 Score=150.96 Aligned_cols=117 Identities=11% Similarity=0.192 Sum_probs=100.3
Q ss_pred ccccccceeEeeecccc-cEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 769 MKGLRELRKYSPLAFEM-VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~-~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
+.+|...+..+.+.+++ .+|+||+.|++|+|||+. +.+..+.+|.+.|.+++|+|+ +|++|+.||+|++||++++
T Consensus 121 L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg 200 (493)
T PTZ00421 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200 (493)
T ss_pred ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence 45677777788888864 799999999999999987 677888999999999999997 9999999999999999988
Q ss_pred cceeEEEeeccCCC-eEEEEEccCCCEEEEEe----CCCcEEEEeCCCc
Q 002641 844 ILHLIQQIREHTKA-VTGLAILQSGEMLYSGS----LDKTARVRSNDSF 887 (897)
Q Consensus 844 ~~~~i~~l~gH~~~-V~slafspdg~~L~SgS----~D~tIrlWdi~~~ 887 (897)
..+..+.+|.+. +..+.|++++..+++++ .|++|++||+++.
T Consensus 201 --~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 201 --TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred --cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 467889999875 45788999988887765 4799999999875
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=8.2e-13 Score=135.33 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=98.2
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeE
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLI 848 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i 848 (897)
...+.|.....+.+++++.||+++|||.. .+++.++.|..+|.++.|++. .++++|.|+|||+|+..-+ ..+
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv 140 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSV 140 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cce
Confidence 34455555567789999999999999976 899999999999999999973 7888899999999999876 579
Q ss_pred EEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 849 QQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 849 ~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
++|.||..-|...+|+|. ++.++|+|.|+++++||++..
T Consensus 141 ~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 141 QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 999999999999999996 799999999999999999874
No 59
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.42 E-value=4.9e-13 Score=152.38 Aligned_cols=129 Identities=27% Similarity=0.365 Sum_probs=111.0
Q ss_pred CCCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC-EEE
Q 002641 757 GLRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIF 827 (897)
Q Consensus 757 ~~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd-~L~ 827 (897)
+..|.+..++ .+++||+..+++.....++. ++|||+|.|+++|-..++...++||+..||+|++.|+ .++
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYV 155 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEE
Confidence 3455555555 36889998888887777777 9999999999999999999999999999999999986 999
Q ss_pred EEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcccee
Q 002641 828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAI 891 (897)
Q Consensus 828 Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~ 891 (897)
|||.|.+||+|.-.+ .+.+|.||++-|..+++-+++ .|+|+|.||.||+||+.++.+..
T Consensus 156 TgsaDKtIklWk~~~----~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~ 214 (745)
T KOG0301|consen 156 TGSADKTIKLWKGGT----LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLE 214 (745)
T ss_pred eccCcceeeeccCCc----hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeee
Confidence 999999999999743 589999999999999998764 58999999999999996665443
No 60
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.42 E-value=1e-12 Score=149.79 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=114.6
Q ss_pred CCCCCCceeee------ecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC-EEEE
Q 002641 756 QGLRDINIHMK------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFS 828 (897)
Q Consensus 756 ~~~~~~~~~i~------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd-~L~S 828 (897)
.+..|.+..+| ..+.+|...++....-++. .++|||.|++||+|.-++.+++|.||++.|..+++-++ .|+|
T Consensus 117 SgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS 195 (745)
T KOG0301|consen 117 SGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS 195 (745)
T ss_pred ecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe
Confidence 46678888888 3588999999888777777 89999999999999999999999999999999999998 9999
Q ss_pred EecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 829 GHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 829 gs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
||+||.||+|++... ++....||+..|++++..+++..++|+|.|+|+|+|+..
T Consensus 196 csNDg~Ir~w~~~ge---~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 196 CSNDGSIRLWDLDGE---VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ecCCceEEEEeccCc---eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999554 789999999999999988888999999999999999976
No 61
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.41 E-value=7e-13 Score=138.01 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=85.4
Q ss_pred EEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc-------------ceeE
Q 002641 787 KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI-------------LHLI 848 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~-------------~~~i 848 (897)
+||+|..|-.|++.|+. ...+++.||.+.|.+|.|+|. .|+|||.||+||+||++... ++.+
T Consensus 160 LiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~ 239 (397)
T KOG4283|consen 160 LIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL 239 (397)
T ss_pred EEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc
Confidence 45556666666666665 578889999999999999995 89999999999999998542 1222
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF 892 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l 892 (897)
.+-..|.+.|..++|..+|.++++.+.|..+++|+..+| .+..|
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEeecccCccccccc
Confidence 334467889999999999999999999999999999988 44444
No 62
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=142.21 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=114.3
Q ss_pred CCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC-----------cceeeccCCCCcEEEEE
Q 002641 760 DINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----------ELVHVDSSENGKVLSIA 820 (897)
Q Consensus 760 ~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----------~~l~~l~gH~~~V~sV~ 820 (897)
....|+|.. +..|-..+.+..|+.||.+|+|||.||.|.+|++. ..++.|.+|+-+|+.+.
T Consensus 102 ~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ 181 (476)
T KOG0646|consen 102 SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQ 181 (476)
T ss_pred cCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEE
Confidence 344788864 45577888999999999999999999999999963 47788889999999998
Q ss_pred EeCC----EEEEEecCCeEEEEeCCCCc----------------------------------------------------
Q 002641 821 CFRD----KIFSGHSDGTIKVWTGRGSI---------------------------------------------------- 844 (897)
Q Consensus 821 fspd----~L~Sgs~DgtIrlWd~~~~~---------------------------------------------------- 844 (897)
..+. +++|.|.|.+||+||+..+.
T Consensus 182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~ 261 (476)
T KOG0646|consen 182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGR 261 (476)
T ss_pred ecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccc
Confidence 8753 99999999999999998876
Q ss_pred ---ceeEEEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 845 ---LHLIQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 845 ---~~~i~~l~gH~~--~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
...+..+.||.+ +|+|++++-||..|+||+.||+++|||+.+. +++++.
T Consensus 262 ~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 262 HEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 123456778998 9999999999999999999999999999987 666654
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.39 E-value=2.9e-12 Score=142.24 Aligned_cols=129 Identities=13% Similarity=0.197 Sum_probs=113.7
Q ss_pred eeeeec------ccccccceeEeeeccc-ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEec
Q 002641 763 IHMKDI------MKGLRELRKYSPLAFE-MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS 831 (897)
Q Consensus 763 ~~i~~~------l~~~~~~~~~~~~s~d-~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~ 831 (897)
.++||. +.||...++.+.+.+. .-+++|||.|++|-+++=. +...++..|...|.||.|+|| +++|.|.
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs 210 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS 210 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC
Confidence 566653 6678888888888764 5689999999999999955 888889999999999999998 9999999
Q ss_pred CCeEEEEeCCCCcceeEEEee---ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 832 DGTIKVWTGRGSILHLIQQIR---EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 832 DgtIrlWd~~~~~~~~i~~l~---gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
||+|.+||-++++ .+..+. +|++.|.+++|+||+..++|+|.|+++||||+.+. ..+++.
T Consensus 211 Dgki~iyDGktge--~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 211 DGKIYIYDGKTGE--KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred CccEEEEcCCCcc--EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 9999999999984 677777 89999999999999999999999999999999998 666654
No 64
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.39 E-value=1.7e-12 Score=142.36 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=101.3
Q ss_pred cccccccceeE-eeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEe
Q 002641 768 IMKGLRELRKY-SPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWT 839 (897)
Q Consensus 768 ~l~~~~~~~~~-~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd 839 (897)
+..+|...+.- .|+..+...++|++.|+.+.|||++ +..+...+|.+.|+|++|+|- .|||||.|++|++||
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 34455544443 3344467789999999999999987 577777899999999999992 999999999999999
Q ss_pred CCCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 840 GRGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 840 ~~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
+++-. .++.++.+|...|.+|.|+|+. ..|+|+|.|+.+.|||+..-
T Consensus 302 lRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 302 LRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred chhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 99875 6799999999999999999985 78999999999999999763
No 65
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=3.3e-12 Score=144.80 Aligned_cols=137 Identities=23% Similarity=0.311 Sum_probs=115.2
Q ss_pred CCCCCceeeeec----------ccccccceeEeee-cccccEEEEecCCCCeEEEeCCc----ce--------eecc-CC
Q 002641 757 GLRDINIHMKDI----------MKGLRELRKYSPL-AFEMVKVLSNGHDSSADFWNHRE----LV--------HVDS-SE 812 (897)
Q Consensus 757 ~~~~~~~~i~~~----------l~~~~~~~~~~~~-s~d~~~LaSgs~DgtIklWd~~~----~l--------~~l~-gH 812 (897)
+..|.++.+|.. +..|.+.+.+... ..+...+||||-|+.|.|||+.. .+ ..+. ||
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 345666666643 4557888888888 77888999999999999999871 11 1222 78
Q ss_pred CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cc
Q 002641 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TY 889 (897)
Q Consensus 813 ~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l 889 (897)
...|++++-++. .|++||..+.+++||.++. .-+..++||+..|..+-.++||+.++|||.||+||+||++.. ++
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccc--cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 899999999997 9999999999999999998 457788999999999999999999999999999999999987 88
Q ss_pred eeeecc
Q 002641 890 AIFIQV 895 (897)
Q Consensus 890 ~~l~~~ 895 (897)
.+|.-+
T Consensus 249 ~T~~vH 254 (735)
T KOG0308|consen 249 ATYIVH 254 (735)
T ss_pred eeEEec
Confidence 877543
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.38 E-value=2e-12 Score=138.84 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=108.0
Q ss_pred CCCCCCceeeeeccccc-------ccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC
Q 002641 756 QGLRDINIHMKDIMKGL-------RELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR 823 (897)
Q Consensus 756 ~~~~~~~~~i~~~l~~~-------~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp 823 (897)
.+..|-++..||...+. .....++...+..++|++||.|..+++||.+ -+..+|.||++.|.+|.|+|
T Consensus 276 S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 34567778888865542 2334455666788899999999999999986 47788999999999999999
Q ss_pred C---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 824 D---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 824 d---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
. +|+|||.||++|+||+++.. .++..+.+|...|.++.|. +|..|+|||.|++|+++.-.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k-~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTK-APLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCC-CcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 5 99999999999999999874 5789999999999999996 57789999999999998643
No 67
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=1.4e-12 Score=136.54 Aligned_cols=124 Identities=18% Similarity=0.313 Sum_probs=109.3
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
..++||+..+....+-..|+.++++|+|.+..+||+. .++..+.||....+.++-+|. ++++.|.|.|.|+||++.
T Consensus 266 ~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence 3467888888888887889999999999999999997 899999999999999999997 889999999999999996
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF 892 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l 892 (897)
. .+.+..|+||+..|+++.|.. +..++|||.|.||++||+++- .+.++
T Consensus 346 a-I~sV~VFQGHtdtVTS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 346 A-IQSVAVFQGHTDTVTSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred h-cceeeeecccccceeEEEEec-CCceeecCCCceEEEeeeccccCcceee
Confidence 5 377899999999999999975 556999999999999999874 44443
No 68
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=3.3e-12 Score=134.46 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=100.6
Q ss_pred eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC----EEEEEecCCeEEEEeCCCCcceeEE
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
.....++.++.++||||.|-+|+|||+. ..+..+..|.+.|+++.|.++ .|+||+.||.|-+|++... .++.
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~ 121 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLK 121 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEee
Confidence 3444556679999999999999999998 677788899999999999975 7999999999999999988 6899
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+++|++.|+.++.+|.|+.-+|.+.|+++|+||+-+|
T Consensus 122 slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 122 SLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred eecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 99999999999999999999999999999999999877
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.3e-12 Score=146.93 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=108.4
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC---CEEEEEe--cCCeEEEEeC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR---DKIFSGH--SDGTIKVWTG 840 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp---d~L~Sgs--~DgtIrlWd~ 840 (897)
++.+|...++-..+++|+.++|||+.|..+.|||.. .....+..|+++|.+++|+| ++||+|+ .|++|++||+
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 477899999999999999999999999999999986 88889999999999999998 3899864 6999999999
Q ss_pred CCCc-----------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcE
Q 002641 841 RGSI-----------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTA 879 (897)
Q Consensus 841 ~~~~-----------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tI 879 (897)
.++. ...+..+.||+..|.+++++|||..+++|+.|.|+
T Consensus 376 ~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 376 NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETL 455 (484)
T ss_pred CCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence 9775 34566788999999999999999999999999999
Q ss_pred EEEeCCCc
Q 002641 880 RVRSNDSF 887 (897)
Q Consensus 880 rlWdi~~~ 887 (897)
++|++-+.
T Consensus 456 rfw~~f~~ 463 (484)
T KOG0305|consen 456 RFWNLFDE 463 (484)
T ss_pred EeccccCC
Confidence 99998763
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=2.1e-12 Score=142.64 Aligned_cols=114 Identities=13% Similarity=0.193 Sum_probs=103.1
Q ss_pred cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce
Q 002641 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
.++.+....|-.||.+++.|+..|.|+|+|++ ..++.+.+|+.+|..+.|+|. ++++|+.|+++++||+.+..
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-- 144 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-- 144 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--
Confidence 45677777888899999999999999999977 588999999999999999994 99999999999999999983
Q ss_pred eEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 847 LIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
....+.||+++|.|.+|+|. +..++|||.||+||+||+++.
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 35589999999999999996 568999999999999999875
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.37 E-value=1.4e-12 Score=134.16 Aligned_cols=129 Identities=18% Similarity=0.241 Sum_probs=111.4
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEe
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWT 839 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd 839 (897)
.-..+|...+..+.+..+|.++++|+.|+++++|++. .......||.+.|-.++|+| |.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3456677788888899999999999999999999987 34445668999999999986 5999999999999999
Q ss_pred CCCCc---------------------------------------------------------------------------
Q 002641 840 GRGSI--------------------------------------------------------------------------- 844 (897)
Q Consensus 840 ~~~~~--------------------------------------------------------------------------- 844 (897)
++.++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 99765
Q ss_pred -----ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 845 -----LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 845 -----~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
+++++.++.|.....|+.|+|+|++|++||.|-.+-+||+..- |.+.|.++
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL 230 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence 5667788899999999999999999999999999999999886 77777653
No 72
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.36 E-value=5.4e-12 Score=144.93 Aligned_cols=117 Identities=22% Similarity=0.321 Sum_probs=104.4
Q ss_pred ceeEeeecccccEEEEecCC-CCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641 775 LRKYSPLAFEMVKVLSNGHD-SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~D-gtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
.+....++..|.|||-|+.. |.+-||+.. ..+-..+||...+.+++++|| +++||+.||.|||||...+ -|+.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~v 386 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFV 386 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEE
Confidence 33445566679999998877 899999987 666677899999999999999 9999999999999999998 6999
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
+|..|+..|+.+.|+..|+.++|.|.|||||.||+..+ ..++|.
T Consensus 387 TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence 99999999999999999999999999999999999887 666664
No 73
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.35 E-value=2.5e-12 Score=138.53 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=100.6
Q ss_pred ccccccceeEee-ecccccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeE
Q 002641 769 MKGLRELRKYSP-LAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI 835 (897)
Q Consensus 769 l~~~~~~~~~~~-~s~d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtI 835 (897)
..||+..+--+. .+.+...|||||.|.+|.||++. ..+..+.||...|.-|+|+|. .|+|+|.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 456665554444 44478899999999999999975 467788899999999999994 99999999999
Q ss_pred EEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 836 KVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 836 rlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+||+.++. .+-++. |..-|+++.|+-||.+|++.+.|+.|||||.++|
T Consensus 157 ~iWnv~tge--ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 157 SIWNVGTGE--ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG 205 (472)
T ss_pred EEEeccCCc--eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC
Confidence 999999994 455566 9999999999999999999999999999999998
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.35 E-value=7.3e-12 Score=136.36 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=101.4
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccC--CCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS--ENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g--H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~ 841 (897)
....|...+......+.|.|++++|.||++.+.|+. ..+..... ..-.+++.+|+|| +|.+|..||.|++||++
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 345577888888888999999999999999999987 33322222 2345899999999 89999999999999999
Q ss_pred CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 842 ~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+ ..+..|.||+++|..++|+.+|.+|++++.|+.|++||+|.-
T Consensus 378 s~--~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 378 SQ--TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred Cc--cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 88 368899999999999999999999999999999999999875
No 75
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.35 E-value=8.5e-12 Score=155.63 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=101.9
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCCc----------ceeeccCCCCcEEEEEEeCC---EEEEEecCCeEE
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE----------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIK 836 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~----------~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIr 836 (897)
.+|...+..+.++++|.++++|+.|++|+|||+.. ....+ .+...|.+++|++. +|++|+.||+|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 34678889999999999999999999999999741 11122 23567999999873 999999999999
Q ss_pred EEeCCCCcceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 837 VWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 837 lWd~~~~~~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
+||+.++ +.+..+.+|.+.|++++|+| ++.+|+|||.|++|++||++++ .+.++
T Consensus 559 lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 559 VWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred EEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 9999987 57888999999999999997 7899999999999999999987 55444
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.34 E-value=1.4e-11 Score=131.85 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=115.9
Q ss_pred CCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 757 GLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
+..|..-++|++ +.+|++.+..+.|+.+|.+||||+.+|.|+||... .....+...-+.+--+.|+|.
T Consensus 82 GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 445555677754 67899999999999999999999999999999987 444444455677888999995
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
+|+.|+.||.+-+|.+.++ ...+.+.||+.++++-.|.|+|+.+++|..||+|++||.++| .+.++.
T Consensus 162 illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 9999999999999999986 467899999999999999999999999999999999999999 555544
No 77
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.34 E-value=6.5e-12 Score=131.53 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=114.6
Q ss_pred CCCCceeeee---------cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC---
Q 002641 758 LRDINIHMKD---------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--- 823 (897)
Q Consensus 758 ~~~~~~~i~~---------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--- 823 (897)
..|..+.+|. ++++|...+--..+..|+..|+|+|.|++++.||+. +..+.+++|.+.|.++.-+.
T Consensus 66 G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~ 145 (338)
T KOG0265|consen 66 GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP 145 (338)
T ss_pred CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCC
Confidence 3555677775 466788777777788899999999999999999987 89999999999999998332
Q ss_pred CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecccC
Q 002641 824 DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVVD 897 (897)
Q Consensus 824 d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~d 897 (897)
.++.||+.|||+||||+++. .+++++. .+..++++.|..++..++||+-|+.|++||++.+ .+-++...+|
T Consensus 146 ~lv~SgsdD~t~kl~D~R~k--~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D 217 (338)
T KOG0265|consen 146 QLVCSGSDDGTLKLWDIRKK--EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD 217 (338)
T ss_pred eEEEecCCCceEEEEeeccc--chhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC
Confidence 39999999999999999976 4566664 3456899999999999999999999999999887 6666666554
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=4.8e-12 Score=139.78 Aligned_cols=121 Identities=19% Similarity=0.299 Sum_probs=97.5
Q ss_pred ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeC
Q 002641 767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTG 840 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~ 840 (897)
..+.+|+..+.++.|++ ++..+++|++|+.+++||+. .....+.+|++.|.|.+|+|. +++|||.||+||+||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 34567788888888877 56678888899999999987 445578899999999999983 8999999999999999
Q ss_pred CCCc----------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEE
Q 002641 841 RGSI----------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTAR 880 (897)
Q Consensus 841 ~~~~----------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIr 880 (897)
+... .+.+..+..|.+.|+|+.+..+++.|+|||.|+.++
T Consensus 184 R~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 184 RSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred ccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceE
Confidence 8652 111222234999999999999999999999999999
Q ss_pred EEeCCCc
Q 002641 881 VRSNDSF 887 (897)
Q Consensus 881 lWdi~~~ 887 (897)
+||+.+-
T Consensus 264 Vfd~t~~ 270 (487)
T KOG0310|consen 264 VFDTTNY 270 (487)
T ss_pred EEEccce
Confidence 9996554
No 79
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.33 E-value=4.8e-12 Score=132.58 Aligned_cols=129 Identities=13% Similarity=0.142 Sum_probs=109.3
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--------------------cceeeccCCCCcEEEEEEeCC--
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------------------~~l~~l~gH~~~V~sV~fspd-- 824 (897)
..+..|+...+.-.|++||.++|+||.|.+|+|.|+. .+++++-.|...|.++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 4567889999999999999999999999999999975 267788889999999999995
Q ss_pred EEEEEecCCeEEEEeCCCCc------------------------------------------ceeE---EEeeccCCCeE
Q 002641 825 KIFSGHSDGTIKVWTGRGSI------------------------------------------LHLI---QQIREHTKAVT 859 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~------------------------------------------~~~i---~~l~gH~~~V~ 859 (897)
+|+||+.|++||++|..... .++. ..-.+|+++|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 99999999999999987532 0000 01136999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 860 GLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 860 slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
+|.+++.|+..++||.||.|++||--++ |+.+|.+.
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A 302 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA 302 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh
Confidence 9999999999999999999999998777 87777653
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.32 E-value=6.4e-12 Score=150.08 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=108.0
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--------------------cceeeccCCCCcEEEEEEeCC--E
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------------------ELVHVDSSENGKVLSIACFRD--K 825 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------------------~~l~~l~gH~~~V~sV~fspd--~ 825 (897)
....|...++++.+++||.+||+||+|+.|.||... +....+.+|.+.|..|+|+|+ +
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 445678899999999999999999999999999853 267788899999999999997 9
Q ss_pred EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
|+|+|.|++|-+||.++. ..+..+++|.+.|-.+.|.|-|++|+|=|.|++|++|++.+
T Consensus 144 lvS~s~DnsViiwn~~tF--~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTF--ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred EEEecccceEEEEccccc--eeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 999999999999999998 68999999999999999999999999999999999999665
No 81
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.9e-12 Score=148.08 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=113.3
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~ 844 (897)
+++|...+..+.+..+-..|+.|+.||+||+||+. +.++++.||...+.+|.|+|- ++++||.|+-+++||++..
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~- 144 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK- 144 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-
Confidence 67888899999999999999999999999999998 888999999999999999994 8899999999999999944
Q ss_pred ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
-|...+++|...|..+.|+|+|+++++|+.|.+++|||...| ....|+
T Consensus 145 -Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 145 -GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred -CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 389999999999999999999999999999999999999888 555665
No 82
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.31 E-value=3e-12 Score=141.16 Aligned_cols=129 Identities=20% Similarity=0.279 Sum_probs=109.6
Q ss_pred CCCCCceeeeec---------ccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCC-CCcEEEEEEeCC--
Q 002641 757 GLRDINIHMKDI---------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSE-NGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~~~---------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH-~~~V~sV~fspd-- 824 (897)
+..|..+++|++ ..||...+.-..++.+|..++|+|.|+++++||+.+-......| ...++||.|+||
T Consensus 233 ~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~ 312 (503)
T KOG0282|consen 233 GGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQ 312 (503)
T ss_pred cCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCC
Confidence 345566777765 44677777777888899999999999999999998333333445 456899999996
Q ss_pred -EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 825 -~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+++|+.|+.|+.||++++ +.++.+..|-+.|..+.|.++|++++|.|.|++++||+.+.+
T Consensus 313 n~fl~G~sd~ki~~wDiRs~--kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 313 NIFLVGGSDKKIRQWDIRSG--KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred cEEEEecCCCcEEEEeccch--HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 9999999999999999999 578899999999999999999999999999999999999887
No 83
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.31 E-value=2.7e-11 Score=151.08 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=94.6
Q ss_pred eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~~~~~i~~ 850 (897)
..+.|.+.++.+|++|+.||+|++||+. +.+..+.+|.+.|++++|+| + +|+|||.||+|++||++++ ..+..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~--~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG--VSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--cEEEE
Confidence 3445555678899999999999999987 67888899999999999996 3 8999999999999999987 46777
Q ss_pred eeccCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCc
Q 002641 851 IREHTKAVTGLAIL-QSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 851 l~gH~~~V~slafs-pdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+..| ..|.++.|+ ++|++|++|+.|++|++||++++
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 7755 679999995 56999999999999999999876
No 84
>PTZ00420 coronin; Provisional
Probab=99.31 E-value=3.9e-11 Score=141.72 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=93.7
Q ss_pred ccccccceeEeeecccccE-EEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 769 MKGLRELRKYSPLAFEMVK-VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~-LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
+.+|...+..+.++|++.. ++||+.|++|+|||+. +....+. |...|.+++|+|+ +|++++.|++|++||++++
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 3457777888888887765 5799999999999997 4444443 6678999999997 8899999999999999998
Q ss_pred cceeEEEeeccCCCeEE-----EEEccCCCEEEEEeCCC----cEEEEeCCC
Q 002641 844 ILHLIQQIREHTKAVTG-----LAILQSGEMLYSGSLDK----TARVRSNDS 886 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~s-----lafspdg~~L~SgS~D~----tIrlWdi~~ 886 (897)
..+..+.+|.+.+.+ ..|++++.+|+|+|.|+ +|+|||+++
T Consensus 200 --~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 200 --EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred --cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 577889999886543 34568899999988775 799999995
No 85
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.4e-12 Score=128.81 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=105.0
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEe-C---CEEEEEecCCeEEEE
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACF-R---DKIFSGHSDGTIKVW 838 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fs-p---d~L~Sgs~DgtIrlW 838 (897)
+-+.|.+.+.-......|++||++|.|++|||+.++ +.+.++.||.++|+.|+|- | ++|+|||.||.|-||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 445666666666677789999999999999999986 5788999999999999995 5 399999999999999
Q ss_pred eCCCCcceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCc
Q 002641 839 TGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 839 d~~~~~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~~ 887 (897)
.-.++.......+..|...|++++|.|. |-.|++||.||+|.|.+.++.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 9998876667888999999999999997 578999999999999988753
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.29 E-value=2.4e-11 Score=133.45 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=102.8
Q ss_pred cccccceeEeeecc-cccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 770 ~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~ 842 (897)
.+|...++++.|++ ++..|||||.|++|.|||++ ..++++.+|...|+.|.|+|+ .|+|+|.|+.+.|||+..
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 45677888888887 56678999999999999987 899999999999999999995 999999999999999974
Q ss_pred Cc------------ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 843 SI------------LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 843 ~~------------~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
-. +.++....||+..|+.+.|+|.- -.++|.+.|+.+.||++...
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 21 34567888999999999999985 67889999999999998743
No 87
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.28 E-value=2.7e-11 Score=125.09 Aligned_cols=135 Identities=17% Similarity=0.311 Sum_probs=112.7
Q ss_pred CCCCceeee--------ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cc----------------------
Q 002641 758 LRDINIHMK--------DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL---------------------- 805 (897)
Q Consensus 758 ~~~~~~~i~--------~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~---------------------- 805 (897)
..|.++.+| ..+.||++.++++....+.+++++||.|.++++||+. +.
T Consensus 29 aKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 29 AKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLI 108 (327)
T ss_pred cCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEE
Confidence 345555666 3578999999999999999999999999999999986 21
Q ss_pred -------------------------------eeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641 806 -------------------------------VHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (897)
Q Consensus 806 -------------------------------l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~ 852 (897)
...+..+.+.++...|.| +.|++|+.||.|..||++++. ..+..-+
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-~~v~s~~ 187 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-ELVDSDE 187 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-eeeechh
Confidence 222223456677888887 399999999999999999985 6778888
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
.|+..|+.+.|++|..++++||.|.+-++||+++- .+.+|.
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999999999999999999999999999987 656554
No 88
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.28 E-value=3.8e-11 Score=124.02 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=105.3
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeC-C-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNH-R-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~-~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~ 844 (897)
+.||.+....+.++.+|.+|.|++.|.++.||-. + +.+-++.||++.|||+..+-+ .++|||.|.++++||+.+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 5678888899999999999999999999999975 4 889999999999999988765 99999999999999999986
Q ss_pred ---------------------------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEE
Q 002641 845 ---------------------------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSG 873 (897)
Q Consensus 845 ---------------------------------------------------~~~i~~l~gH~~~V~slafspdg~~L~Sg 873 (897)
-.++..+..+.+.++..-|.|-++.|++|
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 11233444566788999999999999999
Q ss_pred eCCCcEEEEeCCCc
Q 002641 874 SLDKTARVRSNDSF 887 (897)
Q Consensus 874 S~D~tIrlWdi~~~ 887 (897)
..||.|..||+++|
T Consensus 166 he~G~is~~da~~g 179 (327)
T KOG0643|consen 166 HEDGSISIYDARTG 179 (327)
T ss_pred cCCCcEEEEEcccC
Confidence 99999999999998
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.28 E-value=9.3e-12 Score=137.83 Aligned_cols=118 Identities=17% Similarity=0.275 Sum_probs=93.6
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCCc--------------------------------------------
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE-------------------------------------------- 804 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~-------------------------------------------- 804 (897)
+.+|...+....+.+.|.+++|||.|-+|++||+..
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 456667777778888888888888888888888640
Q ss_pred -----------------ceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEee-----ccCCCeE
Q 002641 805 -----------------LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR-----EHTKAVT 859 (897)
Q Consensus 805 -----------------~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~-----gH~~~V~ 859 (897)
-+..-+||...++|.+|+|+ .|+|||.||++|+||+...+ ...+.|+ |.+-.|+
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCce
Confidence 12223479999999999996 99999999999999999764 3344444 2334789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 860 GLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 860 slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+++|+|||+.|+.|+.||+|.+||.++.
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~ 349 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSR 349 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCc
Confidence 9999999999999999999999997554
No 90
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.2e-12 Score=127.13 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=107.0
Q ss_pred eeeeecccccccceeEeeecc--cccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC----EEEEEecC
Q 002641 763 IHMKDIMKGLRELRKYSPLAF--EMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD----KIFSGHSD 832 (897)
Q Consensus 763 ~~i~~~l~~~~~~~~~~~~s~--d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd----~L~Sgs~D 832 (897)
...-..++||.+.++-..+.. .|..|||+|+||.|.||.-. +..+.+..|.+.|.+|+|.|. .|+.+++|
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 355567889998888777655 89999999999999999975 677788899999999999995 89999999
Q ss_pred CeEEEEeCCCC-cceeEEEeeccCCCeEEEEEccC---C-----------CEEEEEeCCCcEEEEeCCCc
Q 002641 833 GTIKVWTGRGS-ILHLIQQIREHTKAVTGLAILQS---G-----------EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 833 gtIrlWd~~~~-~~~~i~~l~gH~~~V~slafspd---g-----------~~L~SgS~D~tIrlWdi~~~ 887 (897)
|.|.|.+.+.. ..........|.-.|+++.|.|. | +.|+||+.|..|+||+..++
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 99999999865 22334567789999999999986 5 67999999999999999886
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.27 E-value=1.7e-11 Score=143.22 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=94.5
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCC
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~ 843 (897)
+.||..-+--+.++ ..++|+|+|.|+|||||++. +++.+| .|...|+||+|+| | +|+|||-||.||||++...
T Consensus 365 f~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 365 FKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK 442 (712)
T ss_pred hhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence 45554333222222 25689999999999999998 888887 7999999999999 2 9999999999999999987
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT 888 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~ 888 (897)
+ +.....-..-|++++|.|||+..+.|+.+|.+++|++.+..
T Consensus 443 ~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 443 K---VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred e---eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 3 44444445889999999999999999999999999998763
No 92
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.27 E-value=7.1e-11 Score=124.20 Aligned_cols=123 Identities=24% Similarity=0.333 Sum_probs=108.9
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
.+++|...+....+++++.++++++.||.+++|++. +....+.+|...+.++.|+|+ .+++++.||.|++||+.++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 345778888899999999999999999999999987 577788899999999999996 8999999999999999986
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
..+..+.+|...|.++.|+|+++++++++.|+.+++||+.++ ....+
T Consensus 84 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 84 --ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred --cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 467788899999999999999999999998999999999866 44444
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.27 E-value=9.3e-12 Score=137.83 Aligned_cols=119 Identities=24% Similarity=0.296 Sum_probs=95.4
Q ss_pred ccccc-cceeEeeecccccEEEEecCCCCeEEEeCC---cceeecc-----CCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641 769 MKGLR-ELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDS-----SENGKVLSIACFRD--KIFSGHSDGTIKV 837 (897)
Q Consensus 769 l~~~~-~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~-----gH~~~V~sV~fspd--~L~Sgs~DgtIrl 837 (897)
.+||. .+..-+||+.....++|+|+||++|+||+. ..+.+++ +..-.|++.+|+|| .||+|..||+|.+
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI 343 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence 45665 444557777788899999999999999987 3333333 23457899999998 9999999999999
Q ss_pred EeCCCCccee-EEEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 838 WTGRGSILHL-IQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 838 Wd~~~~~~~~-i~~l~gH~~--~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
|+.......+ ...-+.|.. .|+|++||+||++|+|-|.|.++++||++.-
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 9986542222 344567887 8999999999999999999999999999975
No 94
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.26 E-value=8.1e-12 Score=137.61 Aligned_cols=112 Identities=24% Similarity=0.355 Sum_probs=99.6
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCccee
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~ 847 (897)
...+.+.+.+||+.|++|+.-.++.|||+. .....+....-..++++.+|| ..|+|..||.|.|||+++. ..
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq--~~ 543 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TL 543 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc--ee
Confidence 456677788899999999999999999986 333444444567889999998 8999999999999999998 58
Q ss_pred EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 848 i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
++.|+||++.+.|+.+++||..|-+|+.|.+||-||++++
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence 9999999999999999999999999999999999999998
No 95
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.26 E-value=6.4e-12 Score=141.28 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=100.1
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCC
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGR 841 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~ 841 (897)
....+-|-..|..+||.++.||.|++|.+. .....+++|...|+++.|+| |.|++++.|-||++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 344455556688999999999999999974 46677889999999999999 699999999999999999
Q ss_pred CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 842 ~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+. .....|.||++.|..++|||+|+.+++.+.||+|++|+.+++
T Consensus 709 ~~--~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 709 NA--KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hh--hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 98 456789999999999999999999999999999999999887
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=6.4e-12 Score=143.86 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=115.4
Q ss_pred CCCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--
Q 002641 757 GLRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-- 824 (897)
Q Consensus 757 ~~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-- 824 (897)
+..+.++.+||. +.||......+.|.|.+.+.++||.|+-+++||.+ .+.+.+.+|...|.++.|+|+
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence 445556677764 55667666777789999999999999999999998 899999999999999999997
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
++++|+.|.++++||...+ .....|.+|.+.|.++.|+|..-.+++||.|+++++||+++.
T Consensus 168 ~v~~g~ed~tvki~d~~ag--k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAG--KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred eeeccCCcceeeeeccccc--ccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence 9999999999999999988 578899999999999999999999999999999999999964
No 97
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.24 E-value=4.1e-12 Score=97.42 Aligned_cols=39 Identities=33% Similarity=0.745 Sum_probs=31.4
Q ss_pred ccccccCCCCceecCCCcccchHHHHHHHhcCC---CCCCCC
Q 002641 166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGN---SSCPIT 204 (897)
Q Consensus 166 CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~---~~CP~C 204 (897)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998532 469987
No 98
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.9e-11 Score=134.04 Aligned_cols=133 Identities=24% Similarity=0.334 Sum_probs=103.8
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGGLDLS 238 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~~~~~~~ 238 (897)
...+++.||||++.|.+|++++|||+||+.|+..+|. ....||.||. ... .+ .+|..+.++++.++..........
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~-~~n~~l~~~~~~~~~~~~~~~~~~ 84 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NL-RPNVLLANLVERLRQLRLSRPLGS 84 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-cc-CccHHHHHHHHHHHhcCCcccccc
Confidence 5678999999999999999999999999999999998 5668999996 333 66 599999999999987654432111
Q ss_pred CCCCCccCcCCCCCCccccccccccchHHHHHHHHHhhcccccccccccceEeEeccccccccccccccccchHHHHHHH
Q 002641 239 HSEPMSKSIVPSNSPNSVISQATIDGTITELKHAITSLCMSEILNESEMAVLQIERCWLEASMELDIQIMLSKPAVINGF 318 (897)
Q Consensus 239 ~~~~~~~~~~~s~s~~~vc~~h~~~~~l~~L~~~i~~L~~~edL~~ce~~vc~vc~~~~~~~~~h~~h~~l~~~~a~~~~ 318 (897)
. ...|..|. +++ .++|.++ +...|..|.. ...|..|.+.+.+++.+.+
T Consensus 85 ~--------------~~~c~~~~-----~~~-----~~~c~~~----~~~~c~~c~~----~~~h~~h~~~~~~~~~~~~ 132 (386)
T KOG2177|consen 85 K--------------EELCEKHG-----EEL-----KLFCEED----EKLLCVLCRE----SGEHRGHPVLPLEEAAQEY 132 (386)
T ss_pred c--------------chhhhhcC-----Ccc-----eEEeccc----ccccCCCCCC----cccccCCccccHHHHHHHH
Confidence 1 12677777 332 5777777 7788888874 6789999999999999998
Q ss_pred HHHHhccCC
Q 002641 319 VEILFNSVD 327 (897)
Q Consensus 319 ke~L~~sl~ 327 (897)
++.+...+.
T Consensus 133 ~~~~~~~~~ 141 (386)
T KOG2177|consen 133 REKLLAELE 141 (386)
T ss_pred HHHHHHHHH
Confidence 854444433
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.22 E-value=1.4e-11 Score=131.66 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=100.6
Q ss_pred CCCCCCceeeeecc--------cccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccC---------------
Q 002641 756 QGLRDINIHMKDIM--------KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSS--------------- 811 (897)
Q Consensus 756 ~~~~~~~~~i~~~l--------~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~g--------------- 811 (897)
.+..|..+.+|+.. +.|.+++.-+.+.. ..++++|+|++|+.|.+. ..++++.+
T Consensus 84 SGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSV 161 (433)
T ss_pred ccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccccccc
Confidence 45567778899753 34455555444444 778999999999999988 66555543
Q ss_pred ------------------------CCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc--------------------
Q 002641 812 ------------------------ENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI-------------------- 844 (897)
Q Consensus 812 ------------------------H~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~-------------------- 844 (897)
....|.++.|+|. .|++|++|++|-+||++++.
T Consensus 162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea 241 (433)
T KOG0268|consen 162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA 241 (433)
T ss_pred ccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc
Confidence 1124567788883 89999999999999998764
Q ss_pred --------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 --------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 --------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
..++..+++|.++|.+|+|||.|+.|+|||.|++||||.++.+
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 2344566789999999999999999999999999999999876
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=8.8e-11 Score=123.87 Aligned_cols=131 Identities=20% Similarity=0.211 Sum_probs=106.4
Q ss_pred CCCCCceeeee--------cccccccceeEeeeccccc--EEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC
Q 002641 757 GLRDINIHMKD--------IMKGLRELRKYSPLAFEMV--KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD 824 (897)
Q Consensus 757 ~~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~--~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd 824 (897)
+..|.++.++| .+-.|.+.++...|.+... .|+||+.||.|.+|+.+ .++.++++|.+.|+.++.+|.
T Consensus 59 GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 59 GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence 45566666664 3445677777777776544 89999999999999998 899999999999999999995
Q ss_pred --EEEEEecCCeEEEEeCCCCc----------------------------------------------------------
Q 002641 825 --KIFSGHSDGTIKVWTGRGSI---------------------------------------------------------- 844 (897)
Q Consensus 825 --~L~Sgs~DgtIrlWd~~~~~---------------------------------------------------------- 844 (897)
+-+|.|.|+++|+||+-.++
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~ 218 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLD 218 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecC
Confidence 77788889999999877654
Q ss_pred --------------------ceeEEEeeccCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 --------------------LHLIQQIREHTKAVTGLAI--LQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 --------------------~~~i~~l~gH~~~V~slaf--spdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
..+...|.+|.+.|-++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 3455677899999999885 467899999999999999999876
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.21 E-value=3.9e-11 Score=128.92 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred cccccceeEeeecc-cccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeC
Q 002641 770 KGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTG 840 (897)
Q Consensus 770 ~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~ 840 (897)
.+|+..-.-..+++ ....++||..-+.|++|... .-...|.+|+..|-.++|||. .|+|||.||+|||||+
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 34444444444444 45568899888999999865 345567889999999999995 9999999999999999
Q ss_pred CCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc----cceeeeccc
Q 002641 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF----TYAIFIQVV 896 (897)
Q Consensus 841 ~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~----~l~~l~~~~ 896 (897)
+.+..+..-..+.|.+.|+-+.|+..-.+|+||+.||+++|||+++- .+.+|+.+.
T Consensus 288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred cCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 98732333344899999999999988779999999999999999874 455777654
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=7.4e-11 Score=134.02 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=106.2
Q ss_pred ccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcce
Q 002641 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 771 ~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
|++..+...+..+.|..|++|+..+-+++||.+ ..+-.++||+..|.++..++| .++|+|+|||||+||+... +
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--r 246 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--R 246 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--c
Confidence 667777788888889999999999999999987 566677899999999999997 9999999999999999988 6
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
|+.++..|+..|+++..+|+=.++++|+.||.|..=|+++.
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999999999999999999985
No 103
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.21 E-value=3.2e-10 Score=119.22 Aligned_cols=122 Identities=24% Similarity=0.269 Sum_probs=103.7
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
.+|........+.+++.++++++.|+.|++||+. +....+.+|...|.++.|+++ ++++++.||.|++||+.++
T Consensus 48 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 125 (289)
T cd00200 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-- 125 (289)
T ss_pred ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--
Confidence 3444555566677788899999999999999997 578888899999999999995 7777777999999999976
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
.....+.+|...|++++|+|++.++++++.|+.|++||++++ ....+.
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 174 (289)
T cd00200 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174 (289)
T ss_pred EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence 567888899999999999999999999988999999999876 444443
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.20 E-value=1.4e-10 Score=121.81 Aligned_cols=131 Identities=20% Similarity=0.198 Sum_probs=107.5
Q ss_pred CCCCCceeeeeccc----------ccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC-
Q 002641 757 GLRDINIHMKDIMK----------GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD- 824 (897)
Q Consensus 757 ~~~~~~~~i~~~l~----------~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd- 824 (897)
+..|.++++|++.. .|...+-.+.++.||..+++|+.|+.+++||+. .....+..|.++|.++.|-+.
T Consensus 46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~ 125 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGM 125 (347)
T ss_pred cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCC
Confidence 44667778887654 345667777888899999999999999999998 677778899999999999874
Q ss_pred ---EEEEEecCCeEEEEeCCCCc---------------------------------------------------------
Q 002641 825 ---KIFSGHSDGTIKVWTGRGSI--------------------------------------------------------- 844 (897)
Q Consensus 825 ---~L~Sgs~DgtIrlWd~~~~~--------------------------------------------------------- 844 (897)
.|+|||.|+|||.||.+...
T Consensus 126 ~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va 205 (347)
T KOG0647|consen 126 NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA 205 (347)
T ss_pred CcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE
Confidence 78999999999999999655
Q ss_pred ------------------------c--eeEEEeeccCC---------CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 ------------------------L--HLIQQIREHTK---------AVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ------------------------~--~~i~~l~gH~~---------~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
. ..-.+|+.|+. +|++++|+|....|+++|.||++.+||-...
T Consensus 206 ~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 206 CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 0 11235667773 5789999999999999999999999997655
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.19 E-value=8e-11 Score=123.55 Aligned_cols=119 Identities=14% Similarity=0.233 Sum_probs=91.7
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC--c---ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcce
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--E---LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~---~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
..+..+.+-|.|.+++.|..-.++++||+. + .-..-.+|++.|++|.|++. +.++||.||.||+||--.+ +
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~--r 294 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN--R 294 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH--H
Confidence 334445555566666666655666666654 1 11233469999999999986 9999999999999998887 6
Q ss_pred eEEEee-ccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 847 LIQQIR-EHTK-AVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 847 ~i~~l~-gH~~-~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
|+.++. .|.+ .|++..|.-+|++++|.+.|.++++|.+.+| .+.++..
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 888875 4665 6899999999999999999999999999999 7776654
No 106
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=5e-11 Score=133.80 Aligned_cols=126 Identities=22% Similarity=0.271 Sum_probs=105.1
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC----------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTI 835 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI 835 (897)
.+..|....+...+.+..-.|++++.||++++|++. +.+.+|.+|.++|.||++.++ .++|||-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 455556666666677777789999999999999982 688999999999999999986 99999999999
Q ss_pred EEEeCCCCc--------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeee
Q 002641 836 KVWTGRGSI--------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFI 893 (897)
Q Consensus 836 rlWd~~~~~--------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~ 893 (897)
+.|++.... ......+.||++.|+.+++|+....|+++|.|||+|+|+.......+|.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccC
Confidence 999665221 1345678999999999999999999999999999999998877434443
No 107
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.18 E-value=6.9e-11 Score=125.16 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=91.9
Q ss_pred ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEee---ccCC
Q 002641 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIR---EHTK 856 (897)
Q Consensus 785 ~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~---gH~~ 856 (897)
.-++|.||.-|.|+|.|+. +....+.||.+.|..+.|.|+ +++|||.|.+||+|++++. .++..|. ||.+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRD 182 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccC
Confidence 3478888899999999987 888899999999999999985 9999999999999999998 5777664 6999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 857 AVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 857 ~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.|.++.|+++|.+|+|+|.|.++++|++...
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 9999999999999999999999999999843
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=1.6e-10 Score=121.44 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=106.7
Q ss_pred CCCCceeeeec--------ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC-E
Q 002641 758 LRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD-K 825 (897)
Q Consensus 758 ~~~~~~~i~~~--------l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd-~ 825 (897)
..|.+..+||+ +.||....+-+.--|.-++++++|.|.+.++||++ ..+.+|+||+..|+++.|+.| .
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~ 370 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR 370 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc
Confidence 34555566654 55555443333334456789999999999999998 788999999999999999986 9
Q ss_pred EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeee
Q 002641 826 IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFI 893 (897)
Q Consensus 826 L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~ 893 (897)
++|||.|.|||+||+++.. .++.+++ ...+++.++++-.+..|+---.++.||+||+.+..+..++
T Consensus 371 vVSgSDDrTvKvWdLrNMR-splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMR-SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred eeecCCCceEEEeeecccc-Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 9999999999999999875 4566666 4567899999988888888888999999999887665554
No 109
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=3.2e-11 Score=139.28 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=122.8
Q ss_pred HHHHhhhhhhcccCCCcchhhhhhhccccccCCCCCCCCCc--eeeeecccccccceeEeeecccccEEEEecCCCCeEE
Q 002641 722 VSLLKRFISAFKSANDIDDRALSLLALNSFAQDPQGLRDIN--IHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADF 799 (897)
Q Consensus 722 s~Lls~lv~~L~~~~~leervLA~lsl~s~~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIkl 799 (897)
...++.-.+.++..++...-+.|.-++..+...+....+.. .+......-+.....+.|...+.++||+++..|.|.+
T Consensus 35 ~~~~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~v 114 (839)
T KOG0269|consen 35 NCKLKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISV 114 (839)
T ss_pred eeecccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEE
Confidence 33345555666666666666666655554444433332222 2212222222334455666668889999999999999
Q ss_pred EeCC-----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC-CCEE
Q 002641 800 WNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEML 870 (897)
Q Consensus 800 Wd~~-----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd-g~~L 870 (897)
||+. +.+..|..|...|.++.|++ ++|+|||.||+||+||++.. ....++.+....|..|+|+|. +++|
T Consensus 115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t~~~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKSTFRSNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--cccccccccchhhhceeeccCCCceE
Confidence 9987 57778999999999999996 59999999999999999987 467889999999999999996 7899
Q ss_pred EEEeCCCcEEEEeCCCc
Q 002641 871 YSGSLDKTARVRSNDSF 887 (897)
Q Consensus 871 ~SgS~D~tIrlWdi~~~ 887 (897)
+++...|.+++||++..
T Consensus 193 ~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQP 209 (839)
T ss_pred EEecCCceEEEeeccCc
Confidence 99999999999999976
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=9.7e-11 Score=133.81 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=107.1
Q ss_pred ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccC-CCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEE
Q 002641 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS-ENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g-H~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
...+..+.++++|.+|+.|..+|.|.|||.. +.+..+.+ |.+.|.+++|+...+.+|+.||.|..||++..+ ....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-~~~~ 295 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-HVVS 295 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch-hhhh
Confidence 5677888889999999999999999999987 77788888 999999999998899999999999999999875 3344
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
++.+|+..|..++|++||++++||+.|..+.|||..+. .+.+|.+
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~ 341 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE 341 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec
Confidence 69999999999999999999999999999999999654 5444443
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.9e-10 Score=114.62 Aligned_cols=105 Identities=19% Similarity=0.322 Sum_probs=92.2
Q ss_pred ecccccEEEEecCCCCeEEEeCC--cceeeccC--C-----CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641 781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS--E-----NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 781 ~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g--H-----~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
++.++-.++|||.|++|++||++ .++.++.. | .+.|.+|+..|. +|+||..|...-+||++.+ +.++
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~iq 267 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMIQ 267 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--ceee
Confidence 34467789999999999999987 44444432 2 367999999996 9999999999999999998 6899
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.|..|+..|.|+.|+|...++++||.|..|++-|+.+.
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999999999999999999999999999999876
No 112
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.15 E-value=2e-10 Score=137.55 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=104.0
Q ss_pred eeEeeecccccEEEEec--CCCCeEEEeCC--------------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641 776 RKYSPLAFEMVKVLSNG--HDSSADFWNHR--------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKV 837 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs--~DgtIklWd~~--------------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrl 837 (897)
+..+...++|..++||+ .|+.+.+|+.. +.+.+...|.+.|.||.|+|| +||+||.|+.|-+
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 55677889999999999 99999999965 244555679999999999998 9999999999999
Q ss_pred EeCCC----C------------cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 838 WTGRG----S------------ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 838 Wd~~~----~------------~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
|.... . ..+++..+.+|.+.|..++|+|++.+|+|+|.|++|.+||.++. .+.++..+
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 99873 0 04577889999999999999999999999999999999999998 66666543
No 113
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=1.2e-10 Score=126.33 Aligned_cols=112 Identities=20% Similarity=0.213 Sum_probs=96.0
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEE--EEEEeC---CEEEEEecCCeEEEEeCCCCcce
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVL--SIACFR---DKIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~--sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
..+.....+.++++++..=.+..+.+||+. ..++.+.||+..-+ .-+|-. ++++|||.|+.|++|+..++ .
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--k 473 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--K 473 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--c
Confidence 445566678899999999999999999998 78889999965433 335543 29999999999999999998 5
Q ss_pred eEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 847 LIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
++.++.||.+.|+||+|+|. .+.++|||.|||||||-....
T Consensus 474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 89999999999999999996 489999999999999987643
No 114
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.14 E-value=2.1e-10 Score=132.12 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=104.7
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
..+.+...+++.-.+|.|..||.|++|+.. ...-++.||+.+|+++.|+.. .|+|||.|+.|-+||+-.. .-..
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E--~Gl~ 143 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE--EGLF 143 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc--eeeE
Confidence 366777777888899999999999999987 788899999999999999974 9999999999999999876 4577
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
.++||+..|+..-|..+.++++|.|.|+.|++||+.+. |..+.
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th 187 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH 187 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE
Confidence 89999999999999877899999999999999999998 76554
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.13 E-value=1.1e-10 Score=128.21 Aligned_cols=116 Identities=22% Similarity=0.329 Sum_probs=104.4
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcc
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
++|...+..+.+++||+|||+|+.|..|.||++. +.++++.+|.+.|.+++|-. +.++|+|.|++|++|++...
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-- 276 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-- 276 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--
Confidence 3777888889999999999999999999999998 88889999999999999985 49999999999999999876
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
..+.++.||.+.|..+....-++.+-.|+.|+|+++|++...
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee 318 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE 318 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc
Confidence 478899999999999998877777777779999999999554
No 116
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=4.7e-11 Score=133.68 Aligned_cols=72 Identities=22% Similarity=0.522 Sum_probs=65.6
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~ 232 (897)
.+...+.|+||.++|.+||+++|||+||..||..|+.. ...||.|+..+....+ ++|+.|.++|+.|+..++
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~L-r~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKL-RSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccC-ccchHHHHHHHHHHHhhH
Confidence 68889999999999999999999999999999999985 4479999999988788 699999999999987654
No 117
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.9e-10 Score=117.55 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=101.2
Q ss_pred ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--CEEEEEec--CCeEEEEeCCCCcce
Q 002641 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHS--DGTIKVWTGRGSILH 846 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~--DgtIrlWd~~~~~~~ 846 (897)
...+....++.+|..+++++.|.+++|||.. +.++++..++..|..++|-. +.++.++. |.+||.-++.+. +
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--k 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--K 91 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC--c
Confidence 4567788899999999999999999999987 78888888888899999864 35666665 999999999998 6
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.++.|.||++.|++++.+|-++.++|+|.|++||+||++..
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence 99999999999999999999999999999999999999966
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=4.4e-10 Score=118.55 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=94.8
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~ 852 (897)
.+..+.+++.+..|+.+||||++++||+. ..+...-.|.+++.+.+|.++ .+++|+.||.||++|+.++. ...+.
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~---~~~ig 91 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN---EDQIG 91 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCc---ceeec
Confidence 34445566777888888899999999998 544455578999999999987 99999999999999999984 56677
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.|.++|.|+.+++....+++||+|++|++||.++.
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence 89999999999998889999999999999999954
No 119
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=2e-10 Score=125.80 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=95.9
Q ss_pred ccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc
Q 002641 771 GLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 771 ~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~ 844 (897)
+|...+-...+.. ..+.|||||.|+||++||+. ++..++.-|.+.|.++.|+|. .|++||.|++|++.|.+...
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 4444443433333 35679999999999999997 888888889999999999984 99999999999999988321
Q ss_pred ------------------------------------------ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEE
Q 002641 845 ------------------------------------------LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARV 881 (897)
Q Consensus 845 ------------------------------------------~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrl 881 (897)
.+++.+++.|.+.|+++.+++. ...++++|.|+++++
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL 400 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence 4678889999999999999876 478999999999999
Q ss_pred EeCCCc
Q 002641 882 RSNDSF 887 (897)
Q Consensus 882 Wdi~~~ 887 (897)
|++...
T Consensus 401 w~~~~~ 406 (463)
T KOG0270|consen 401 WKFDVD 406 (463)
T ss_pred EeecCC
Confidence 998654
No 120
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.10 E-value=3.6e-11 Score=139.25 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=103.8
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
-+.||...+.+..+...|.+|++|++|..+|||.+. .++....||.+.++.++.+.+ +++++|.|..||+|.+.++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 356788889999999999999999999999999987 899999999999999999875 9999999999999999998
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
.++..+.||+++|++++|+|-. +.+.|||+++||.+
T Consensus 265 --~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 265 --APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred --chHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 5889999999999999999965 78899999999998
No 121
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=1.1e-10 Score=127.76 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=88.1
Q ss_pred cccEEEEecCCCCeEEEeCC-----cceee------------------ccCCCCcEEEEEEeCC---EEEEEecCCeEEE
Q 002641 784 EMVKVLSNGHDSSADFWNHR-----ELVHV------------------DSSENGKVLSIACFRD---KIFSGHSDGTIKV 837 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~-----~~l~~------------------l~gH~~~V~sV~fspd---~L~Sgs~DgtIrl 837 (897)
-|+++|.|..|..|.|||+. .+..+ -.+|+..|.+++|+.. .|||||.|.||++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 47899999999999999975 11111 2269999999999974 9999999999999
Q ss_pred EeCCCCcceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 002641 838 WTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 838 Wd~~~~~~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~ 886 (897)
||+.++ ++..++..|++.|.+++|+|. +..|++||.|+++++.|.|.
T Consensus 271 WD~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 271 WDVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred EEcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 999999 578888899999999999986 68999999999999999983
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=4.7e-10 Score=118.31 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=114.5
Q ss_pred hhccccccCCCCCCCCCceeeee---cccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEE
Q 002641 745 LLALNSFAQDPQGLRDINIHMKD---IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIA 820 (897)
Q Consensus 745 ~lsl~s~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~ 820 (897)
.+++|...+-.++....+..-|| +.+.|+-.+...+.+..+.+|+|+|.|.+|.+|+.+ +.+..+......-+..+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecccccccccee
Confidence 34566666655555555555566 556666666678888899999999999999999998 77777777666677778
Q ss_pred EeCC--EEEEEecCCeEEEEeCC---CCc---ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 821 CFRD--KIFSGHSDGTIKVWTGR---GSI---LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 821 fspd--~L~Sgs~DgtIrlWd~~---~~~---~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.||+ ++++++.-.-|+||.+- .+. ..-+..++||..+|..++|+++.+.++|.|.||++|+||+.-.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 8998 89999999999999874 232 2335678999999999999999999999999999999998643
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7.2e-10 Score=122.24 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=102.6
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC-------C
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR-------G 842 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~-------~ 842 (897)
+.+.....+++|.+++.|...|.+.+|.+. .++.++.+|=..|+|+.|+.| +|+|||.||.|.+|++- +
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence 467778888999999999999999999987 899999999999999999987 99999999999999875 2
Q ss_pred CcceeEEEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSG--EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg--~~L~SgS~D~tIrlWdi~~~ 887 (897)
+...+++.|.+|+-+|+++...+.| .+++|+|.|.++|+||+..|
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 2356789999999999999988764 68999999999999999998
No 124
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.06 E-value=5.4e-11 Score=121.74 Aligned_cols=125 Identities=16% Similarity=0.195 Sum_probs=111.3
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
.+..||+..++...+..+..+.||++.|-+.++||.- ..++.| .|+.-|.+++|+.| .|++|+.+..+||+|++.
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 5778999999999999999999999999999999954 555554 68899999999987 999999999999999998
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
.+ .+...+.||++.|..+-|+...+.|+|++.|++||+||.++| ..+++.
T Consensus 132 p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 132 PK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred CC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 75 567889999999999999988889999999999999999999 666553
No 125
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.06 E-value=3.2e-11 Score=130.84 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=109.5
Q ss_pred eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKV 837 (897)
Q Consensus 764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrl 837 (897)
.....+..|...+..+.+-++...|++|+.|..|++|++. ..+.++.|..++|+++.|.++ .+++.+.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3445566677777788888888899999999999999986 588889999999999999876 8999999999999
Q ss_pred EeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cce
Q 002641 838 WTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYA 890 (897)
Q Consensus 838 Wd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~ 890 (897)
|++... +...++.||++.|+++.|......++||+.|.||++||+..+ +..
T Consensus 246 Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 246 WNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred eeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence 999987 678899999999999999877666999999999999999987 443
No 126
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.06 E-value=6.1e-10 Score=120.98 Aligned_cols=118 Identities=20% Similarity=0.267 Sum_probs=96.8
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC-----------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-----------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR 841 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~ 841 (897)
...+..+....+.++||+.|..|++|-+. ..+..+..|..+|.+|.|+|+ +|+||+.+|.|-+|-..
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 33333333445599999999999999874 256677889999999999997 99999999999999876
Q ss_pred --------C------CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 842 --------G------SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 842 --------~------~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
+ ........+.+|.+.|..++|+|++.++++|+.|.++++||++.| ..+.+
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 2 112345668899999999999999999999999999999999999 44444
No 127
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=112.08 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=76.3
Q ss_pred cEEEEecCCCCeEEEeCCccee---------eccC-C-----CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeE
Q 002641 786 VKVLSNGHDSSADFWNHRELVH---------VDSS-E-----NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (897)
Q Consensus 786 ~~LaSgs~DgtIklWd~~~~l~---------~l~g-H-----~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i 848 (897)
.+|+||+ ||.|+=|...+... .... | -..|.++-..|. -++.++.|+.+.-||+.++ +..
T Consensus 73 ~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G--~i~ 149 (325)
T KOG0649|consen 73 DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG--RIQ 149 (325)
T ss_pred hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC--EEE
Confidence 3566665 49998777641111 0000 2 235677777773 5555568999999999999 578
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
++++||++.|.++.--...-.++||+.||++|+||.+++ +.+++
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence 899999999999998555556899999999999999998 65554
No 128
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.05 E-value=1.1e-10 Score=117.46 Aligned_cols=60 Identities=25% Similarity=0.473 Sum_probs=51.1
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhc---------------CCCCCCCCCcccCCCCCCcccHH
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER---------------GNSSCPITRQKLSSTKLPKTNYV 219 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~---------------~~~~CP~Cr~~~~~~~~~~pN~~ 219 (897)
+..+++.||||++.++|||+++|||.||+.||.+|+.. +...||+||..+....+ .|.+.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L-vPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL-VPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE-EEeec
Confidence 56678999999999999999999999999999999852 23479999999988877 36643
No 129
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.04 E-value=3.1e-09 Score=114.22 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=109.5
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
....|...+..+.+.|+.++++||+.|....||+.. .....+.||+..|+++.|+.| +|+||..+|.|+||+..++
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 456788899999999999999999999999999987 788889999999999999987 9999999999999999988
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
. ....+.+--..+.=+.|+|.+..|+.|+.||.+-+|.+.++ ..+.|.
T Consensus 139 ~--~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 139 G--EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred c--eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 3 45566555666777999999999999999999999999985 655554
No 130
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.04 E-value=9.8e-10 Score=114.86 Aligned_cols=114 Identities=16% Similarity=0.242 Sum_probs=97.2
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCc-
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSI- 844 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~- 844 (897)
.+..|.|...|.++|.++|-|.|..|||+. .+...+-.|..+|+.|+|.. +.|+|+|.||+||++|++.-+
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH 231 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH 231 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence 445566667788999999999999999987 24666778999999999997 399999999999999998543
Q ss_pred ---------------------------------------------ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCc
Q 002641 845 ---------------------------------------------LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKT 878 (897)
Q Consensus 845 ---------------------------------------------~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~t 878 (897)
..++..+++|++.|+.++|.|. +.+|.|+|.|.+
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q 311 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ 311 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence 3345677899999999999997 589999999999
Q ss_pred EEEEeCCCc
Q 002641 879 ARVRSNDSF 887 (897)
Q Consensus 879 IrlWdi~~~ 887 (897)
+-+||+.+-
T Consensus 312 aliWDl~q~ 320 (364)
T KOG0290|consen 312 ALIWDLQQM 320 (364)
T ss_pred EEEEecccc
Confidence 999999753
No 131
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=5e-10 Score=124.97 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=107.1
Q ss_pred eeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cc-eeeccCCCCcEEEEEEeC---C-EEEEEecCCeEEE
Q 002641 765 MKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL-VHVDSSENGKVLSIACFR---D-KIFSGHSDGTIKV 837 (897)
Q Consensus 765 i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~-l~~l~gH~~~V~sV~fsp---d-~L~Sgs~DgtIrl 837 (897)
....+.||.+-+++..++.+|.+|+|||+|-.+.|||.- ++ ...-+||.+.|+|++|-| | +++||..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 456789999999999999999999999999999999975 43 444568999999999998 3 9999999999999
Q ss_pred EeCCCCc--------ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 838 WTGRGSI--------LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 838 Wd~~~~~--------~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
+|+...+ ......+..|+..|..++..|++ +.+.|+|.||+||-+|++..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9998411 24456678899999999999998 89999999999999999873
No 132
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=3.5e-09 Score=107.01 Aligned_cols=142 Identities=18% Similarity=0.133 Sum_probs=114.9
Q ss_pred hhhhccccccCCCCCCCCCceeeeecccc----------c-----ccceeEeeecccccEEEEecCCCCeEEEeCC--cc
Q 002641 743 LSLLALNSFAQDPQGLRDINIHMKDIMKG----------L-----RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--EL 805 (897)
Q Consensus 743 LA~lsl~s~~~~~~~~~~~~~~i~~~l~~----------~-----~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~ 805 (897)
|+..++++.+. ..+.++.+++.|+..-. | ...+..+.+.|.|+.++||-.|.+..+||++ ++
T Consensus 187 lalyswn~~m~-~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 187 LALYSWNGAMF-ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEEEecCcEE-EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 34344443332 26788999999963211 1 1445667778899999999999999999998 89
Q ss_pred eeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc--eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002641 806 VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL--HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (897)
Q Consensus 806 l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~--~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrl 881 (897)
++.+..|...|.||.|+|. ++++||.|..||+-|+..... -++.....|+..+..+.|+|..-.|+|.|.|+|+.+
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 9999999999999999997 999999999999999986521 235566789999999999999999999999999999
Q ss_pred EeCC
Q 002641 882 RSND 885 (897)
Q Consensus 882 Wdi~ 885 (897)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.5e-09 Score=111.68 Aligned_cols=119 Identities=14% Similarity=0.233 Sum_probs=100.7
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC------cceeeccCCCCcEEEEEEeC----CEEEEEecCCeEEE
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFR----DKIFSGHSDGTIKV 837 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------~~l~~l~gH~~~V~sV~fsp----d~L~Sgs~DgtIrl 837 (897)
+..+|++.+..+.+.+.|+++|++|.|++++|||.+ .+....+.|.+.|+.|.|-+ +.+++||.|++++|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 446788999999999999999999999999999964 56677788999999999964 39999999999999
Q ss_pred EeCCCC-------cceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCC
Q 002641 838 WTGRGS-------ILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 838 Wd~~~~-------~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~ 886 (897)
|.-... ......++...++.|+.|.|.|. |-.+++++.||++|||+.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 986311 12335677788899999999996 78999999999999998654
No 134
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.00 E-value=2.7e-09 Score=110.26 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=104.0
Q ss_pred CCCceeeeecccc-------cccceeEeeecccccEEEEecCCCCeEEEeCC----------------------------
Q 002641 759 RDINIHMKDIMKG-------LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---------------------------- 803 (897)
Q Consensus 759 ~~~~~~i~~~l~~-------~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---------------------------- 803 (897)
.+.++++|++..+ .+.......++|+|.+++.|+.|..|...|.+
T Consensus 85 ~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence 4556777776544 12445556667778887777777777666643
Q ss_pred ---------------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC
Q 002641 804 ---------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS 866 (897)
Q Consensus 804 ---------------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd 866 (897)
+.+..++.|.....||.|+|+ +|++||.|..+.+||+..- .|++.|.-|.-+|..+.||.|
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL--ICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh--hhheeeccccCceEEEEeccC
Confidence 256667789999999999997 9999999999999999875 688999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCc
Q 002641 867 GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 867 g~~L~SgS~D~tIrlWdi~~~ 887 (897)
|++|+|||.|..|-|=++.+|
T Consensus 243 g~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cceeeccCccceEEeEecccC
Confidence 999999999999998888888
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=3e-09 Score=125.41 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=71.4
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCC--------CCcEEEEEEeCC--EEEEEecCCeE
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSE--------NGKVLSIACFRD--KIFSGHSDGTI 835 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH--------~~~V~sV~fspd--~L~Sgs~DgtI 835 (897)
.+++|...+..+.+.|.+.+||+.+-||+|++||+. .+..++.+- ...+.-++|+|+ .|+..+.|++|
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence 345555555555555555555555555555555554 343333331 122344455554 55555555555
Q ss_pred EEEeCCCCcceeEEEee--ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 836 KVWTGRGSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 836 rlWd~~~~~~~~i~~l~--gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
++++..++. ....+. .|...+++++|+|.|.||++++.||.|.|||+.+-
T Consensus 213 kvy~r~~we--~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 213 KVYSRKGWE--LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEEccCCce--eheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 555555543 222222 24445999999999999999999999999999964
No 136
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.5e-09 Score=111.44 Aligned_cols=126 Identities=14% Similarity=0.072 Sum_probs=88.3
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
....||...++....+|-+..++|+|.|++|++||++ ++...+ +...-...+|.|. ++|.|...+.|++||++.
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 4567889999999999988999999999999999987 222222 2222234566665 445554445777777664
Q ss_pred Cc---------------------------------------------ceeEEEeeccCCCe---EEEEEccCCCEEEEEe
Q 002641 843 SI---------------------------------------------LHLIQQIREHTKAV---TGLAILQSGEMLYSGS 874 (897)
Q Consensus 843 ~~---------------------------------------------~~~i~~l~gH~~~V---~slafspdg~~L~SgS 874 (897)
-. +....+|.+|...- -+..|.|||+++++|+
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec
Confidence 31 23455566665432 4678999999999999
Q ss_pred CCCcEEEEeCCCc-cceeeec
Q 002641 875 LDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 875 ~D~tIrlWdi~~~-~l~~l~~ 894 (897)
.||+|.+|++++| ....+..
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999 6655543
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=125.02 Aligned_cols=116 Identities=18% Similarity=0.197 Sum_probs=81.6
Q ss_pred eeEeeecccccEEEEecCCCCeEEEeCC--cceeec---cCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc----
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVD---SSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI---- 844 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l---~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~---- 844 (897)
...+..+..|++.+-|+..|+|-++|+. -....+ ..|+++|..|+...- .++|++.||.+++||.++..
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 3444455566666666666666666665 222333 256666666666542 66666666666666665432
Q ss_pred -----------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-c
Q 002641 845 -----------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-T 888 (897)
Q Consensus 845 -----------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~ 888 (897)
.+.++.|.||++.|++++|||||++|++++.|++||+||+-++ .
T Consensus 531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 1356678899999999999999999999999999999999998 5
Q ss_pred cee
Q 002641 889 YAI 891 (897)
Q Consensus 889 l~~ 891 (897)
+..
T Consensus 611 ID~ 613 (910)
T KOG1539|consen 611 IDG 613 (910)
T ss_pred eee
Confidence 443
No 138
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=2.8e-09 Score=120.03 Aligned_cols=120 Identities=24% Similarity=0.300 Sum_probs=101.8
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC------------cceeeccCCCCcEEEEEEeC--CEEEEEecCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------------ELVHVDSSENGKVLSIACFR--DKIFSGHSDG 833 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------------~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~Dg 833 (897)
..++|...+-++.++.++..+.||+.||+|+.|++. ....++.||++.||.+++|+ +.|++||.||
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence 346778889999999999999999999999999542 46778899999999999997 4999999999
Q ss_pred eEEEEeCCCCc---------------------------------------------------------------------
Q 002641 834 TIKVWTGRGSI--------------------------------------------------------------------- 844 (897)
Q Consensus 834 tIrlWd~~~~~--------------------------------------------------------------------- 844 (897)
|+|+|+.....
T Consensus 419 Tvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 419 TVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred eEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence 99999876433
Q ss_pred ----------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 ----------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ----------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
..++.....|...|+++++.|+|-+|.+|+.|+.+++|.+...
T Consensus 499 ~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 499 PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 2222333467889999999999999999999999999998665
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.93 E-value=1.1e-09 Score=117.49 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=90.3
Q ss_pred eeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeec
Q 002641 779 SPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (897)
Q Consensus 779 ~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~g 853 (897)
+.++|++-.+++|+.|..+..+|++ ..+.++.+|.++|.+|+|||. .|+|||.|.+||||.++.+..+ ..+
T Consensus 235 IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR--diY-- 310 (433)
T KOG0268|consen 235 ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR--DIY-- 310 (433)
T ss_pred eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcch--hhh--
Confidence 3445588889999999999999987 888899999999999999995 9999999999999999977311 111
Q ss_pred cC---CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 854 HT---KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 854 H~---~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
|+ +.|.||.||.|.++++|||.|+.||+|.....
T Consensus 311 htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 311 HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred hHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 44 37999999999999999999999999987654
No 140
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.93 E-value=6.1e-09 Score=113.43 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=101.2
Q ss_pred CCCCCceeeeeccccc-------ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCC----CCcEEEEEEeC
Q 002641 757 GLRDINIHMKDIMKGL-------RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSE----NGKVLSIACFR 823 (897)
Q Consensus 757 ~~~~~~~~i~~~l~~~-------~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH----~~~V~sV~fsp 823 (897)
+..+...+.|++..++ .+.+..+..+.++..+.|++.|.++++.|+. ....++... ...++.+.|||
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred cccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 3456668888754432 2567778888999999999999999999987 555555532 34488999999
Q ss_pred C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCC--CeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 824 D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK--AVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 824 d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~--~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
+ ++++||.||.|+||++.+++ +...+...+. +|++++|+|.|..+++++.++.+++|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgK--lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGK--LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEccCce--EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 7 99999999999999999994 5555555444 599999999999999999999999993
No 141
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.93 E-value=6.5e-09 Score=113.74 Aligned_cols=126 Identities=15% Similarity=0.165 Sum_probs=107.6
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
.+++||...+..+.+.++...++++|.|..|+||... ........|.++|+.+..+|. +|+++|+||+.-+.|+++
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS 334 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence 4678999888888899999999999999999999987 555667789999999999985 999999999999999999
Q ss_pred CcceeEEEeeccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 843 SILHLIQQIREHT--KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 843 ~~~~~i~~l~gH~--~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
+. .+......+ -.+++.+|+|||..|.+|+.|+.+++||++++ ....|..
T Consensus 335 g~--~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 335 GS--QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred Cc--EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 84 443333222 25899999999999999999999999999988 6666654
No 142
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.93 E-value=3.3e-09 Score=116.91 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=105.8
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--c----ceee-------------c-cCCCCcEEEEEEeCC--
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--E----LVHV-------------D-SSENGKVLSIACFRD-- 824 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~----~l~~-------------l-~gH~~~V~sV~fspd-- 824 (897)
..+..|+..+..+.++++..+.++++.|++|.-|++. . .+.. - ++|...+.+++.++|
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4556788889999999999999999999999999974 1 1111 1 278889999999998
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
+|++|+.|..|.||+..+. ..++.|++|.+.|.+++|--....++|+|.|++|++|++..- .+.+|
T Consensus 216 ylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred EEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 9999999999999999998 478889999999999999877789999999999999999764 44333
No 143
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.92 E-value=5.7e-10 Score=115.88 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=99.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCCCCCceeeeccccccccccCcccccc---cc----ccccCCCCCCCCCCCCC-Chhh
Q 002641 40 NCRVFASYFKQVLENSNDSGLIIVTPPSVVLRKIEKVGGLHFDSEIESS---LD----KHLNNSSYSSSDSDAEA-TDEQ 111 (897)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~p~~~~~~~~~~~-~~~q 111 (897)
+|+--+|||++|++|.|.+++. -++..-+|||++|-.-++-++.-. .+ |.|.. ..+.... -..|
T Consensus 181 RCGqkgHwIqnCpTN~Dpnfdg---kRirrttGIPk~FLk~ve~p~e~~~a~imit~EG~yVv-----~qpdvqsWe~Yq 252 (427)
T COG5222 181 RCGQKGHWIQNCPTNQDPNFDG---KRIRRTTGIPKDFLKPVEGPNEPSNAAIMITPEGGYVV-----AQPDVQSWEKYQ 252 (427)
T ss_pred ecCCCCchhhcCCCCCCCCccc---eeeeccCCCCHHhcccccCCCcccccceEEcCCCCeEE-----eccchHHHHHHH
Confidence 5888999999999999999997 378888999999986443332221 11 33331 1100000 0111
Q ss_pred hhhhhcCCChhhHhhhccCCccccCCCCCCcccccccCCCCCCCCCCCCCCcccccccccCCCCceec-CCCcccchHHH
Q 002641 112 KNIRMASLEPRQRQIRKQKQPIFVESSCSPDHLIMADADNPPGIGKHTPPKDFVCPITTHIFDDPVTL-ETGQTYERRAI 190 (897)
Q Consensus 112 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ma~~~~~~~~~~~~~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI 190 (897)
+....--++ |+.+.- ..+.+++ |.||.|..++++|+.+ +|||+||..||
T Consensus 253 ~r~~a~~~~--------------------~Dqv~k--------~~~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci 302 (427)
T COG5222 253 QRTKAVAEI--------------------PDQVYK--------MQPPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECI 302 (427)
T ss_pred HHHHhhhhC--------------------chhhhc--------cCCCCcc--ccCcchhhhhhCcccCccccchHHHHHH
Confidence 111111000 010110 0211343 9999999999999998 99999999999
Q ss_pred HHHHhcCCCCCCCCCcc-cCCCCCCcccHHHHHHHHHHHHh
Q 002641 191 QEWIERGNSSCPITRQK-LSSTKLPKTNYVLKRLIASWQEQ 230 (897)
Q Consensus 191 ~~~~~~~~~~CP~Cr~~-~~~~~~~~pN~~L~~li~~~~~~ 230 (897)
..-+-...+.||.|... +-.+.+ .|+...+.-|+.+...
T Consensus 303 ~~al~dsDf~CpnC~rkdvlld~l-~pD~dk~~EvE~~lkk 342 (427)
T COG5222 303 GTALLDSDFKCPNCSRKDVLLDGL-TPDIDKKLEVEKALKK 342 (427)
T ss_pred hhhhhhccccCCCcccccchhhcc-CccHHHHHHHHHHHHH
Confidence 98776667899999764 445666 6999999999888764
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.92 E-value=3e-09 Score=111.14 Aligned_cols=102 Identities=18% Similarity=0.365 Sum_probs=88.0
Q ss_pred cccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCC
Q 002641 784 EMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~ 857 (897)
+|+.+++. .|+++..||++ +....-..|...|..+.|+|+ +|+||+.||.||+||.+..+ .+++++.+|.-+
T Consensus 183 dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-~pv~el~~HsHW 260 (370)
T KOG1007|consen 183 DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-FPVQELPGHSHW 260 (370)
T ss_pred ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-ccccccCCCceE
Confidence 67777776 58999999998 333344468889999999997 89999999999999999875 679999999999
Q ss_pred eEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 858 VTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 858 V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
|++|.|+|.. ..++|||.|..|.+|...+-
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEecccc
Confidence 9999999975 78889999999999987653
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.90 E-value=3e-09 Score=121.00 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=82.5
Q ss_pred cccccEEEEecCCCCeEEEeCC--ccee--eccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc----------
Q 002641 782 AFEMVKVLSNGHDSSADFWNHR--ELVH--VDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI---------- 844 (897)
Q Consensus 782 s~d~~~LaSgs~DgtIklWd~~--~~l~--~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~---------- 844 (897)
.+....|++++.|.++++||+. ++.. .+.||.+.|-+++|.|+ .|++|+.||.|.|||++-..
T Consensus 109 apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 109 APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence 3355689999999999999997 4444 48899999999999984 99999999999999988332
Q ss_pred ---------------ceeEEEeeccCCCeEE---EEEccCCCEEEEEeC-CCcEEEEeCCCc
Q 002641 845 ---------------LHLIQQIREHTKAVTG---LAILQSGEMLYSGSL-DKTARVRSNDSF 887 (897)
Q Consensus 845 ---------------~~~i~~l~gH~~~V~s---lafspdg~~L~SgS~-D~tIrlWdi~~~ 887 (897)
.+-+...+.|.+.|.+ +-++.|...|+|+|. |++|+|||++..
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 0112223345555555 555688889999987 999999999875
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=9.1e-09 Score=108.73 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=98.4
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCCc--ceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCc
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRE--LVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~--~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~ 844 (897)
+.+..|...+.++.+.+....+++||+|++|++||... ...++ .....|+++..+.+.|+.|..|..|.+||+++-.
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 34556778888888888888999999999999999882 22222 2345899999999999999999999999998643
Q ss_pred -------------c---------------------------------eeEEEeeccCC---------CeEEEEEccCCCE
Q 002641 845 -------------L---------------------------------HLIQQIREHTK---------AVTGLAILQSGEM 869 (897)
Q Consensus 845 -------------~---------------------------------~~i~~l~gH~~---------~V~slafspdg~~ 869 (897)
. ..-..|+.|.. +|++++|+|-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 0 11124566654 7999999999889
Q ss_pred EEEEeCCCcEEEEeCCCc-cceee
Q 002641 870 LYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 870 L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
|+||+.||.|.+||+.+. .+..|
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhc
Confidence 999999999999999886 44433
No 147
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.89 E-value=5.3e-10 Score=118.23 Aligned_cols=72 Identities=18% Similarity=0.353 Sum_probs=65.1
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~ 232 (897)
.+.+-+.|-||.++|+-|++++||||||.-||..++.. .+.||.|+.++....+ +.|+.|.++|+.|.-.+.
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~L-r~n~il~Eiv~S~~~~R~ 90 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDL-RNNRILDEIVKSLNFARN 90 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhh-hhhhHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999985 5589999999999989 899999999999876554
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=6e-09 Score=119.55 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=104.2
Q ss_pred ecccccccceeEeeecccccEEEEecCCC-----CeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEE
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDS-----SADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKV 837 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~Dg-----tIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrl 837 (897)
+-+.||.-.+..+..+++|+.+||++... .|++|+.. ...+.+.+|.-.|+.++|||| +|+|.|.|.++.+
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 35678889999999999999999998654 58899987 566689999999999999998 9999999999999
Q ss_pred EeCCCCccee---EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 838 WTGRGSILHL---IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 838 Wd~~~~~~~~---i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
|...... .. ....+.|+--|+++.|+|++.+|+++|.|++|++|....+
T Consensus 599 ~~~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 599 YEVQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eeeeccc-chhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9987543 11 2236789999999999999999999999999999998765
No 149
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.88 E-value=5.6e-09 Score=116.82 Aligned_cols=120 Identities=17% Similarity=0.117 Sum_probs=101.1
Q ss_pred eeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEE
Q 002641 763 IHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (897)
Q Consensus 763 ~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlW 838 (897)
..-|.+-++ .++-..|++||++||+.|.||.+||+|+. +++...+.--+...||+|||| +|++|+.|--|.||
T Consensus 283 v~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 283 VARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred cceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 445666555 34445567799999999999999999998 677777777899999999998 99999999999999
Q ss_pred eCCCCcceeEEEeeccCCCeEEEEEcc------------------------------------------------CCCEE
Q 002641 839 TGRGSILHLIQQIREHTKAVTGLAILQ------------------------------------------------SGEML 870 (897)
Q Consensus 839 d~~~~~~~~i~~l~gH~~~V~slafsp------------------------------------------------dg~~L 870 (897)
.+... +.+.--+||+.+|+.|+|.| ....|
T Consensus 360 Sf~er--RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRf 437 (636)
T KOG2394|consen 360 SFEER--RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRF 437 (636)
T ss_pred Eeccc--eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEe
Confidence 99987 57888899999999999983 01368
Q ss_pred EEEeCCCcEEEEeCCCc
Q 002641 871 YSGSLDKTARVRSNDSF 887 (897)
Q Consensus 871 ~SgS~D~tIrlWdi~~~ 887 (897)
.|.+.|.++.+||+.-.
T Consensus 438 GSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 438 GSVGQDTQLCLWDLTED 454 (636)
T ss_pred ecccccceEEEEecchh
Confidence 89999999999999765
No 150
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.88 E-value=1.1e-09 Score=82.77 Aligned_cols=38 Identities=32% Similarity=0.835 Sum_probs=33.3
Q ss_pred ccccccCCCCc-eecCCCcccchHHHHHHHhcCCCCCCCC
Q 002641 166 CPITTHIFDDP-VTLETGQTYERRAIQEWIERGNSSCPIT 204 (897)
Q Consensus 166 CpIC~~l~~dP-V~l~CGHtFCr~CI~~~~~~~~~~CP~C 204 (897)
||||.+.+.+| +.++|||+||+.|+.+|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999997 6799987
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.5e-08 Score=107.05 Aligned_cols=116 Identities=15% Similarity=0.198 Sum_probs=93.3
Q ss_pred eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l 851 (897)
..++.|++.|.++|+|..||.|-+||+. ...+++.+|..+|+|++||+| .|+|.|.|..|++||+..+. +++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEE
Confidence 5688899999999999999999999987 788899999999999999997 99999999999999999875 22211
Q ss_pred e-----------c------------------------c----------CC-CeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 852 R-----------E------------------------H----------TK-AVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 852 ~-----------g------------------------H----------~~-~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
+ . | .+ .-.+..|.+.|+++++|...|.+.++|..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 1 0 0 00 11223467779999999999999999998
Q ss_pred Cc-cceeee
Q 002641 886 SF-TYAIFI 893 (897)
Q Consensus 886 ~~-~l~~l~ 893 (897)
+- ++..|+
T Consensus 184 t~e~vas~r 192 (405)
T KOG1273|consen 184 TLECVASFR 192 (405)
T ss_pred hheeeeeee
Confidence 86 555544
No 152
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.87 E-value=6.5e-10 Score=90.94 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=35.6
Q ss_pred CCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHH
Q 002641 160 PPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI 224 (897)
Q Consensus 160 l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li 224 (897)
+++-+.|++|.++|++||.+ .|.|.||..||.+.+. ..||+|+.+....++ +.|+.|.++|
T Consensus 4 le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~-~~NrqLd~~i 65 (65)
T PF14835_consen 4 LEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDI-QINRQLDSMI 65 (65)
T ss_dssp HHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS-----HHHHHHH
T ss_pred HHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHH-HhhhhhhccC
Confidence 34568899999999999975 9999999999987654 359999999988999 7999999886
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.84 E-value=1.5e-08 Score=106.07 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=97.5
Q ss_pred ecccccccceeEeeeccccc-EEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC--C-EEEEEecCCeEEEEe
Q 002641 767 DIMKGLRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR--D-KIFSGHSDGTIKVWT 839 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp--d-~L~Sgs~DgtIrlWd 839 (897)
.+...|...+.-..+.|+.. +|+|++.||.|++||++ ..+..+.+|..+||+|.|+| | +++|||.|..|.+|.
T Consensus 208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 34455566677777777644 68999999999999987 68888999999999999999 3 999999999999997
Q ss_pred CCCCc---------------------------ceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCc
Q 002641 840 GRGSI---------------------------LHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 840 ~~~~~---------------------------~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWdi~~~ 887 (897)
...-. --.+.++..|...|++++||. |.-.|+|-|.||.+.|=.+...
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 64221 112457889999999999986 4567889999999998776554
No 154
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.6e-09 Score=110.73 Aligned_cols=57 Identities=21% Similarity=0.486 Sum_probs=49.3
Q ss_pred CCcccccccccCCCCceecCCCcccchHHHHHHHhcC--CCCCCCCCcccCCCCCCcccH
Q 002641 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG--NSSCPITRQKLSSTKLPKTNY 218 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~~~~~~~pN~ 218 (897)
-..|.|.||++.-+|||++.|||-||..||.+|+... ...||+|+..++.+.++ |=+
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv-PlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV-PLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE-eee
Confidence 3479999999999999999999999999999999843 44699999999888874 544
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.79 E-value=8.7e-09 Score=114.15 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=96.5
Q ss_pred eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc--------
Q 002641 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-------- 844 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~-------- 844 (897)
.....++|.+..+++..||.|.|||+. .+++.|+||++.+.|+..++| .|-||+-|++||-||++++.
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~ 592 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS 592 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh
Confidence 445678899999999999999999997 899999999999999999987 99999999999999999765
Q ss_pred ------------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 ------------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ------------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
......+.-|..-|.++.|.+-|++++|.+.|.-+..|.+--|
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 1111234457778999999999999999999999999988766
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.79 E-value=1.4e-08 Score=110.67 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=109.1
Q ss_pred eeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC------------------cceeeccCCCCcEEEEEEeCC
Q 002641 763 IHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------------------ELVHVDSSENGKVLSIACFRD 824 (897)
Q Consensus 763 ~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------------------~~l~~l~gH~~~V~sV~fspd 824 (897)
+..-..+..|...++++.++++|..+|||+.+|.|.+|-.. .....+.+|...|+.++|+||
T Consensus 55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 44446788899999999999999999999999999999743 245667789999999999997
Q ss_pred --EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 825 --KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 825 --~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+++|+-|+++++||+..+ .....+.+|...|..++|.|-+.++++-|.|...+.+++...
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G--~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAG--QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred CceeeeeeccceEEEEEeccc--eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeee
Confidence 9999999999999999999 578899999999999999999999999999998887776654
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.76 E-value=2.1e-08 Score=110.65 Aligned_cols=114 Identities=23% Similarity=0.281 Sum_probs=91.0
Q ss_pred cceeEeeecccc-cEEEEecCCCCeEEEeCC------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCC
Q 002641 774 ELRKYSPLAFEM-VKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 774 ~~~~~~~~s~d~-~~LaSgs~DgtIklWd~~------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~ 843 (897)
++....+|+... +.+|+|+.-|.|-+||++ .-+..+.+|.++|.++.|+|. ++++.|.||+||+=|+.+.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 333444455444 789999999999999993 567778899999999999994 9999999999999998865
Q ss_pred c-------------------------------------------ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcE
Q 002641 844 I-------------------------------------------LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTA 879 (897)
Q Consensus 844 ~-------------------------------------------~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tI 879 (897)
. ......+.-|.+.|++++++|-. .+|+|||.|+|.
T Consensus 268 i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~ 347 (498)
T KOG4328|consen 268 ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA 347 (498)
T ss_pred hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce
Confidence 3 01112233478899999999974 789999999999
Q ss_pred EEEeCCCc
Q 002641 880 RVRSNDSF 887 (897)
Q Consensus 880 rlWdi~~~ 887 (897)
+|||++.-
T Consensus 348 kIWD~R~l 355 (498)
T KOG4328|consen 348 KIWDLRQL 355 (498)
T ss_pred eeeehhhh
Confidence 99999873
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.75 E-value=1.7e-08 Score=114.88 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=92.5
Q ss_pred EeeecccccEEEEecCCCCeEEEeCCc--------ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCccee
Q 002641 778 YSPLAFEMVKVLSNGHDSSADFWNHRE--------LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL 847 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~DgtIklWd~~~--------~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~ 847 (897)
|..+....+.|+.+..||.|.++|..+ .+..+..|.+.|+.+.|-|. .|++.+.|.|||+||+++..+.-
T Consensus 57 Fs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G 136 (720)
T KOG0321|consen 57 FSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG 136 (720)
T ss_pred ccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec
Confidence 444445577899999999999999861 23456679999999999996 99999999999999999985333
Q ss_pred EEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 848 IQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 848 i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
...+.||+..|.+++|.|+. ..|++|+.||.|.|||++-.
T Consensus 137 ~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 137 GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 34499999999999999974 78999999999999999754
No 159
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.74 E-value=4.5e-09 Score=109.08 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQN 231 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~ 231 (897)
.+..-+.|-||.+.++-|+.++|||+||.-||.+++.. ...||+||.......+ +.+..++.+++.+...+
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrl-r~~s~~~ei~es~~~~r 91 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRL-RGSSGSREINESHARNR 91 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhc-ccchhHHHHHHhhhhcc
Confidence 45667899999999999999999999999999999985 5589999999888888 79999999999987654
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=9.8e-09 Score=123.82 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=79.7
Q ss_pred EEEEecCCCCeEEEeCC--cceeeccCCCC--cEEEEEEeCC---EEEEEecC---CeEEEEeCCCCcceeEEEeeccCC
Q 002641 787 KVLSNGHDSSADFWNHR--ELVHVDSSENG--KVLSIACFRD---KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTK 856 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~--~~l~~l~gH~~--~V~sV~fspd---~L~Sgs~D---gtIrlWd~~~~~~~~i~~l~gH~~ 856 (897)
.|+||+.+|.+.|||++ +.+-.+..|.+ .+..|.|+|+ .+++++.| -.|.+||++... .+++++.+|..
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~ 254 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQR 254 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-Cchhhhccccc
Confidence 36777777777777777 33444444433 4677888886 55555554 468888887553 56788899999
Q ss_pred CeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 857 AVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 857 ~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
.|.++.|++.+ ++++|++.|++|.+||..+| .+..|.
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 99999999976 89999999999999999998 555554
No 161
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.73 E-value=8.4e-09 Score=78.84 Aligned_cols=39 Identities=38% Similarity=0.994 Sum_probs=36.1
Q ss_pred ccccccCCCCce-ecCCCcccchHHHHHHHh-cCCCCCCCC
Q 002641 166 CPITTHIFDDPV-TLETGQTYERRAIQEWIE-RGNSSCPIT 204 (897)
Q Consensus 166 CpIC~~l~~dPV-~l~CGHtFCr~CI~~~~~-~~~~~CP~C 204 (897)
||||.+.+.+|+ +++|||+||+.|+.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 566689987
No 162
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=112.50 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=95.5
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~ 850 (897)
...+.+++.++.++++|+.+++|.+|.+. +.-..+..-+-++.+++|+.+ +++.||.|-.||+-+..+. .....
T Consensus 56 g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--s~~~~ 133 (933)
T KOG1274|consen 56 GELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--SQEKV 133 (933)
T ss_pred CceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc--chhee
Confidence 33455566667788888888888888876 333344445677888888876 9999999999999999876 36788
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeecc
Q 002641 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~ 895 (897)
++||.++|.++.|+|.|++|++.+.||+|++||+.++ +..++..+
T Consensus 134 lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 9999999999999999999999999999999999998 55555443
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.71 E-value=1.2e-08 Score=108.42 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=88.4
Q ss_pred ccccccceeE-eeecccccEEEEecCCCCeEEEeCC--cceeecc---CCCCcEEEEEEeCC--EEEEEecCCeEEEEeC
Q 002641 769 MKGLRELRKY-SPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS---SENGKVLSIACFRD--KIFSGHSDGTIKVWTG 840 (897)
Q Consensus 769 l~~~~~~~~~-~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~---gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~ 840 (897)
+.+|...++- -.++...++++|+|.|.+||+||+. .++.+|- ||.+.|.+|.|+++ +|+|||.|.++++|++
T Consensus 131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l 210 (385)
T KOG1034|consen 131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL 210 (385)
T ss_pred eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEec
Confidence 3344433333 3344467899999999999999998 5555554 69999999999986 9999999999999999
Q ss_pred CCCc--------------------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 841 RGSI--------------------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 841 ~~~~--------------------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi 884 (897)
...+ +....+-.-|+.+|-|+.|. |++++|-|.++.|..|..
T Consensus 211 ~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 211 NVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP 278 (385)
T ss_pred ChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence 8332 00011234589999999998 789999999999999987
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=7.8e-08 Score=103.81 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=98.6
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC--------cceeecc-CCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--------ELVHVDS-SENGKVLSIACFRD--KIFSGHSDGTI 835 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--------~~l~~l~-gH~~~V~sV~fspd--~L~Sgs~DgtI 835 (897)
.-+.+|.+.++.+.|+.++.+|+||+.|..+++|++. +.+.... .|.+.|+|++|+.. .++||+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3455678889999999999999999999999999986 2333322 24689999999864 99999999999
Q ss_pred EEEeCCCCcceeEEEee--ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 836 KVWTGRGSILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 836 rlWd~~~~~~~~i~~l~--gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+.|+.+.+ .+..+. ...+.|+.+..+|..+.|++.+.||.|.+||++..
T Consensus 130 I~HDiEt~q--si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 130 IKHDIETKQ--SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred Eeeecccce--eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 999999873 444443 23459999999999999999999999999999865
No 165
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.70 E-value=4.1e-08 Score=112.60 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=79.8
Q ss_pred ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C----EEEEEecCCeEEEEeCCCCcc
Q 002641 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D----KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d----~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
+..++.+.++|+|++||+|..-|+++||++. ........|...|.|+.|+. + +|+|+|.|..|+|+|+... .
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-y 537 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-Y 537 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-c
Confidence 5667889999999999999999999999997 66667789999999999984 3 8999999999999999865 3
Q ss_pred eeEEEeeccCCCeEEEEEccCC
Q 002641 846 HLIQQIREHTKAVTGLAILQSG 867 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg 867 (897)
.+++++.+|...|+++.|..+|
T Consensus 538 ~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred chhhhhcccccceeEEEEeecC
Confidence 5677788887777777775544
No 166
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.68 E-value=4.8e-08 Score=116.93 Aligned_cols=117 Identities=17% Similarity=0.201 Sum_probs=103.5
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCc
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~ 844 (897)
.+.||.+......++.||++++|.|.|.++|+|+++ ....+.-||++.|+.++|+|+.++|+|.|.|.++|+....
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~- 248 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGT- 248 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecccc-
Confidence 467888888888888999999999999999999997 3444777999999999999999999999999999977664
Q ss_pred ceeEEEeeccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 845 LHLIQQIREHTK-AVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ~~~i~~l~gH~~-~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+.++.+|.. .++.++..++.-..+|++.|+++++||..+.
T Consensus 249 --~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 249 --QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred --eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 3558889876 6899999998899999999999999998764
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.6e-07 Score=108.02 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=93.9
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~ 859 (897)
++.+|.|.+-+|+|.-||+. +....+..-.+.||+++.+|. .++.|+.||.+...++.++....-..|.-.++.|.
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 68899999999999999987 777777788899999999994 89999999999999998886555666777889999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 860 GLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 860 slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+++|+|+|..+++||.||.||+||..++
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCC
Confidence 9999999999999999999999999998
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.3e-07 Score=95.30 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=89.3
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEE-eCC-EEEEEecCCeEEEEeCCCCcceeEE
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIAC-FRD-KIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~f-spd-~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
..++..+..|..+-++.++-|+.+.-||+. +..++++||++.|.+|.- +.+ .++||+.||++|+||.++++ .+.
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k--~v~ 192 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK--HVS 192 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc--eeE
Confidence 556777787766666666689999999998 888999999999999988 444 99999999999999999984 554
Q ss_pred Eee---------ccC-CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 850 QIR---------EHT-KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 850 ~l~---------gH~-~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
.+. .|. ++|-+++.+ ..++++|+ ...+.+|.+++. +.++|+
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred EeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe
Confidence 443 333 357777765 55788776 457899999987 656553
No 169
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.65 E-value=4.4e-07 Score=93.95 Aligned_cols=109 Identities=11% Similarity=0.109 Sum_probs=83.2
Q ss_pred ceeEeeecccccEE--EEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecC---CeEEEEeCCCCcce
Q 002641 775 LRKYSPLAFEMVKV--LSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILH 846 (897)
Q Consensus 775 ~~~~~~~s~d~~~L--aSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~D---gtIrlWd~~~~~~~ 846 (897)
.+....++|+|..+ ++|..++.|.+||++ +.+..+ +...+..|.|+|+ +++.|+.+ |.|.+||+++. .
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~ 136 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--K 136 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--E
Confidence 36667778888875 445577899999998 555554 4567789999997 77777644 67999999976 4
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCccc
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSL------DKTARVRSNDSFTY 889 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~------D~tIrlWdi~~~~l 889 (897)
.+..+. | ..++.++|+|||++|++++. |..++||+..+..+
T Consensus 137 ~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 137 KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 555554 3 34789999999999999974 78899999876533
No 170
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.3e-07 Score=98.40 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=96.0
Q ss_pred eecccccccceeEeeecccccEEEEecCCCCeEEEeCC-------cceeeccCCCCcEEEEEEeCC---EEEEEecCCeE
Q 002641 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-------ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTI 835 (897)
Q Consensus 766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-------~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtI 835 (897)
-.+++||...+....|+.||++|+|.+.|++|++|+++ ++++.-. .-+-.+.|.|.|| .++++.+..++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 35789999999999999999999999999999999987 1222111 1235678999998 88999999999
Q ss_pred EEEeCCCCc---c--ee-----EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceee
Q 002641 836 KVWTGRGSI---L--HL-----IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIF 892 (897)
Q Consensus 836 rlWd~~~~~---~--~~-----i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l 892 (897)
++|...... . .. ..--+-|.-.|-++-..-++.+|.|+|.|.+|.+|++++..++++
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~i 224 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSI 224 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeee
Confidence 999875322 0 10 111233566777788877889999999999999999995555544
No 171
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.64 E-value=1.3e-08 Score=78.19 Aligned_cols=36 Identities=28% Similarity=0.748 Sum_probs=23.1
Q ss_pred ccccccCCCC----ceecCCCcccchHHHHHHHhcC---CCCCC
Q 002641 166 CPITTHIFDD----PVTLETGQTYERRAIQEWIERG---NSSCP 202 (897)
Q Consensus 166 CpIC~~l~~d----PV~l~CGHtFCr~CI~~~~~~~---~~~CP 202 (897)
||||.+ |.+ |++++|||+||+.||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999998853 44677
No 172
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.2e-07 Score=100.28 Aligned_cols=100 Identities=11% Similarity=0.165 Sum_probs=84.8
Q ss_pred ccEEEEecCC-----CCeEEEeCC------cceeeccCCCCcEEEEEEeCC------EEEEEecCCeEEEEeCCCCc---
Q 002641 785 MVKVLSNGHD-----SSADFWNHR------ELVHVDSSENGKVLSIACFRD------KIFSGHSDGTIKVWTGRGSI--- 844 (897)
Q Consensus 785 ~~~LaSgs~D-----gtIklWd~~------~~l~~l~gH~~~V~sV~fspd------~L~Sgs~DgtIrlWd~~~~~--- 844 (897)
..+||.|+.+ +.++||... ..+..+.+|+.+|+.++|.|+ +|++++.|| |+||.++...
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i 262 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI 262 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence 3468888876 578899865 456677799999999999995 899999999 9999998411
Q ss_pred ---------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 845 ---------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 845 ---------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
...+..+.+|++.|+.+.|+-.|..|.|.|.||+||+|...
T Consensus 263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 263 EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 34566788999999999999999999999999999999754
No 173
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.61 E-value=3e-08 Score=79.36 Aligned_cols=47 Identities=28% Similarity=0.490 Sum_probs=40.6
Q ss_pred CcccccccccCCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCcccC
Q 002641 162 KDFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 162 ~el~CpIC~~l~~dPV~l~CGHt-FCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
++..|+||++-..+++.++|||. ||..|+.+|+. ....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 5668999999875
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=8.4e-08 Score=101.55 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=68.4
Q ss_pred EEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 816 VLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 816 V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
..|+.|++ ++|++|..||.|-+||+.+. ..-+.+.+|.-+|+|++||+||+.|+|+|.|..|++||+..| ++..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 78999998 49999999999999999997 467789999999999999999999999999999999999998 55443
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.59 E-value=1.2e-07 Score=107.66 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=99.3
Q ss_pred ecccccccceeEeeecc-cccEEEEecCCCCeEEEeCC----cce---eeccCC-CCcEEEEEEeC--C-EEEEEecCCe
Q 002641 767 DIMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR----ELV---HVDSSE-NGKVLSIACFR--D-KIFSGHSDGT 834 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~----~~l---~~l~gH-~~~V~sV~fsp--d-~L~Sgs~Dgt 834 (897)
.++.+|.+.+.-..|++ +..+||++|.|..|+||.+. +.+ ....|| +-.|-++.|+| | ++++ +..|+
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~ 151 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGS 151 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCce
Confidence 34667778887777776 56789999999999999986 211 222345 55789999998 4 5555 45689
Q ss_pred EEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641 835 IKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF 892 (897)
Q Consensus 835 IrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l 892 (897)
+++||+.++ +.+..+.+|+..|.+..|+.||..+++++.|+.|||||.+.. .+++.
T Consensus 152 v~i~D~stq--k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~t 209 (1012)
T KOG1445|consen 152 VYITDISTQ--KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTT 209 (1012)
T ss_pred EEEEEcccC--ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccc
Confidence 999999998 578899999999999999999999999999999999999875 44443
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.58 E-value=2.4e-07 Score=100.68 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=98.8
Q ss_pred CCCCCCceeeeec---------------cccccccee-EeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEE
Q 002641 756 QGLRDINIHMKDI---------------MKGLRELRK-YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVL 817 (897)
Q Consensus 756 ~~~~~~~~~i~~~---------------l~~~~~~~~-~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~ 817 (897)
.+..|.+..+|++ +.||+..+. +.||....+.|+|+|.|.+|.+||+. ..+-++. |.+-|+
T Consensus 99 SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~ 177 (472)
T KOG0303|consen 99 SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVY 177 (472)
T ss_pred cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEE
Confidence 4556666777754 456654444 45566677889999999999999997 4444454 999999
Q ss_pred EEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCC-eEEEEEccCCCEEEEEe---CCCcEEEEeCCCc
Q 002641 818 SIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA-VTGLAILQSGEMLYSGS---LDKTARVRSNDSF 887 (897)
Q Consensus 818 sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~-V~slafspdg~~L~SgS---~D~tIrlWdi~~~ 887 (897)
++.|+.| +|+|.+.|..|||||.+++ ..+..-.+|.+. -..+-|--+|..+.+|- .++++-+||..+-
T Consensus 178 S~sfn~dGs~l~TtckDKkvRv~dpr~~--~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKDKKVRVIDPRRG--TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred EEEeccCCceeeeecccceeEEEcCCCC--cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence 9999987 9999999999999999999 466666788773 34566878888665552 5789999997653
No 177
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.3e-08 Score=96.85 Aligned_cols=52 Identities=21% Similarity=0.604 Sum_probs=44.1
Q ss_pred CCcccccccccCCCC--ceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641 161 PKDFVCPITTHIFDD--PVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (897)
Q Consensus 161 ~~el~CpIC~~l~~d--PV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~ 213 (897)
..-+.||||++-+.+ ||.+.|||.||+.||...++. ...||+|++.+..+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQF 182 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhh
Confidence 345999999999976 556899999999999999885 4589999998877766
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.58 E-value=2e-07 Score=99.08 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=94.7
Q ss_pred ccccceeEeeecc-cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEEeCCCCc
Q 002641 771 GLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSI 844 (897)
Q Consensus 771 ~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~~~~ 844 (897)
+...+..+..++| +.+.++.|++..++-|+.-. ..+..+-||.+.|+.+.|.++ .|++|+. |-.|-.||++...
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 4455666666666 66799999999998888754 888999999999999999997 9999987 7899999999764
Q ss_pred ceeEEEeeccCC-CeEEEEE--ccCCCEEEEEeCCCcEEEEeCCC
Q 002641 845 LHLIQQIREHTK-AVTGLAI--LQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 845 ~~~i~~l~gH~~-~V~slaf--spdg~~L~SgS~D~tIrlWdi~~ 886 (897)
.++..+..|.+ .-..+-| .|+|++|+||+.||.|++||+++
T Consensus 285 -~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 285 -DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred -chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 66778888876 3334444 58899999999999999999988
No 179
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.57 E-value=2.8e-07 Score=110.51 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=97.3
Q ss_pred eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~ 852 (897)
.....+.+.-++++|+.-+.|.+|+.. ..-..+.||.+.++++.|+-| +++|+|.|.++|+|++.+.+ ....+.-
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~-~~~~~~f 215 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE-VLGCTGF 215 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc-ccCcccc
Confidence 344566678899999999999999986 332358899999999999876 99999999999999999885 3345677
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeeecc
Q 002641 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQV 895 (897)
Q Consensus 853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~~~ 895 (897)
||+..|+.+.|+|+ .++|++.|.|.++|+....+++++.++
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h 256 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEH 256 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhh
Confidence 89999999999988 899999999999998766666666544
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=2.1e-07 Score=99.68 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=80.5
Q ss_pred cccEEEEecCCCCeEEEeCC----cceeeccCCC-CcEEEEEEeC-C-EEEEEe----cCCeEEEEeCCCCcceeEE-Ee
Q 002641 784 EMVKVLSNGHDSSADFWNHR----ELVHVDSSEN-GKVLSIACFR-D-KIFSGH----SDGTIKVWTGRGSILHLIQ-QI 851 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~-~~V~sV~fsp-d-~L~Sgs----~DgtIrlWd~~~~~~~~i~-~l 851 (897)
.++.+.|++.||+|++||++ .....+..|. .+..|++.+- + +++.|. .|..+.+||++..+ +.+. -+
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-q~l~~~~ 161 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-QLLRQLN 161 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-chhhhhh
Confidence 57789999999999999987 3444455565 4566666652 3 666653 57889999999875 4343 45
Q ss_pred eccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 852 REHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 852 ~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
..|...|+++.|+|. .+.|+|||.||-|.++|++..
T Consensus 162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred hhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 679999999999997 589999999999999999764
No 181
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=97.47 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=89.6
Q ss_pred cccceeEeeecccccEEEEecCCCCeEEEeCC------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
|...+....+.+-...=++|+.+..+..|++. +.-..++-.+-.|..+..-|| .++|+|.||.||||+-++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 44445555555444455788888889999986 222223334567888999998 9999999999999999998
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi 884 (897)
.++..++-|...|++++|+|+.+.++++|.|++|-+|++
T Consensus 284 --~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 --NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 588999999999999999999999999999999999985
No 182
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.54 E-value=8.3e-07 Score=96.11 Aligned_cols=114 Identities=9% Similarity=0.088 Sum_probs=82.1
Q ss_pred eEeeecccccEEE-EecCCCCeEEEeCC--cceeeccCCC-----C--cEEEEEEeCC--E-EEEEecCCeEEEEeCCCC
Q 002641 777 KYSPLAFEMVKVL-SNGHDSSADFWNHR--ELVHVDSSEN-----G--KVLSIACFRD--K-IFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 777 ~~~~~s~d~~~La-Sgs~DgtIklWd~~--~~l~~l~gH~-----~--~V~sV~fspd--~-L~Sgs~DgtIrlWd~~~~ 843 (897)
....+++++.+++ ++..|+.|++||+. +.+..+..+. . ....++|+|+ . +++.+.++.|.+||+.++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 3456788888774 55579999999987 4444443221 1 2346889987 4 455566788999999887
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCc-cceeee
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~~-~l~~l~ 893 (897)
+ .+..+ .+...+.+++|+|+|++|++++ .+++|++||++++ .+..++
T Consensus 240 ~--~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 240 E--VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred c--EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 3 34433 3445789999999999998874 6899999999998 556553
No 183
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.54 E-value=2e-07 Score=102.96 Aligned_cols=107 Identities=19% Similarity=0.119 Sum_probs=86.5
Q ss_pred eeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce--eEEE
Q 002641 779 SPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH--LIQQ 850 (897)
Q Consensus 779 ~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~--~i~~ 850 (897)
..++.+...++.|..=|...+||++ .....+.-|...|.+|+++|- +++|||.|+|.+|||++.-..+ ++-.
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence 3445566666777766789999987 446667789899999999983 9999999999999999954322 2344
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
...|+..|.+..|||+|-.|++-+.|..|||||..
T Consensus 365 t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 55699999999999998679999999999999984
No 184
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4.7e-08 Score=102.84 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=47.0
Q ss_pred CCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (897)
Q Consensus 160 l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~ 213 (897)
.+....|.+|++-..+|--++|||.||..||..|... ...||.||..+.+..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 4556999999999999999999999999999999985 3469999999887765
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.53 E-value=1.1e-06 Score=95.28 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=85.6
Q ss_pred cccEEEE-ecC-CCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeE-EEEeCCCCcceeEEEeeccCC
Q 002641 784 EMVKVLS-NGH-DSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTI-KVWTGRGSILHLIQQIREHTK 856 (897)
Q Consensus 784 d~~~LaS-gs~-DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI-rlWd~~~~~~~~i~~l~gH~~ 856 (897)
++.++|- ++. .|.|.|||+. +.+.++..|++.+.+++|+++ +|||+|..||| ||+.+.++ +.+..|+--..
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G--~kl~eFRRG~~ 217 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG--QKLYEFRRGTY 217 (391)
T ss_pred CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--cEeeeeeCCce
Confidence 4446554 444 4899999987 788888999999999999997 99999999985 99999988 46777775444
Q ss_pred --CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 857 --AVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 857 --~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.|.+++|+|++.+|.+.|..+||.+|.+...
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 4689999999999999999999999998764
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=5.6e-07 Score=98.92 Aligned_cols=117 Identities=18% Similarity=0.286 Sum_probs=94.2
Q ss_pred eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc--------
Q 002641 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-------- 844 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~-------- 844 (897)
.+..++.+|..+++|+.||++|+|++. ..+.....|.+.|.++.|+|| .|+|-+.| ..+||++.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678889999999999999999999976 666667789999999999998 89999999 99999999872
Q ss_pred -------------------ceeE---------E-----Eeec-----------cCCCeEEEEEccCCCEEEEEeCCCcEE
Q 002641 845 -------------------LHLI---------Q-----QIRE-----------HTKAVTGLAILQSGEMLYSGSLDKTAR 880 (897)
Q Consensus 845 -------------------~~~i---------~-----~l~g-----------H~~~V~slafspdg~~L~SgS~D~tIr 880 (897)
+.+. . ..++ -.+.|++++++++|++++-|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 0000 0 0011 123789999999999999999999999
Q ss_pred EEeCCCc-cceeeec
Q 002641 881 VRSNDSF-TYAIFIQ 894 (897)
Q Consensus 881 lWdi~~~-~l~~l~~ 894 (897)
|++..+- .++.+++
T Consensus 307 i~~~~~lq~~~~vk~ 321 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKE 321 (398)
T ss_pred EEEeceeeeeEeehh
Confidence 9998875 4444443
No 187
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.52 E-value=8.2e-07 Score=96.15 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=79.9
Q ss_pred cEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--E-EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (897)
Q Consensus 786 ~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~-L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s 860 (897)
..++|++.|+.+++||.. +.+..+.+|.. +.+++|+|+ . +++++.|++|++||..++. .+..+..|.. +..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE--VIGTLPSGPD-PEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc--EEEeccCCCC-ccE
Confidence 568899999999999986 66777776644 678999997 4 4677889999999999873 4555655544 567
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEeCCCc-cceee
Q 002641 861 LAILQSGEMLYSG-SLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 861 lafspdg~~L~Sg-S~D~tIrlWdi~~~-~l~~l 892 (897)
++|+|+|+.++.+ +.|+++++||++++ .+..+
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 8999999877554 56899999999887 44444
No 188
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.52 E-value=6.5e-08 Score=101.69 Aligned_cols=49 Identities=20% Similarity=0.436 Sum_probs=41.2
Q ss_pred CCCcccccccccCCCCc--------eecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 160 PPKDFVCPITTHIFDDP--------VTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 160 l~~el~CpIC~~l~~dP--------V~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
..++..||||++.+.++ ++++|||.||+.||.+|+.. ..+||+||..+.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 44578999999987764 56699999999999999874 568999999875
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.52 E-value=1.6e-06 Score=95.63 Aligned_cols=117 Identities=26% Similarity=0.353 Sum_probs=98.6
Q ss_pred cccccccceeEeeecccccEEEEecC-CCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGH-DSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGR 841 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~-DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~ 841 (897)
...+|...+....+.+++..+++++. |+.+++|+.. ..+..+.+|...|.+++|+|+ .+++++.|++|++||..
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 34556667777888889988999886 9999999987 688888899999999999986 45555999999999988
Q ss_pred CCcceeEE-EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 842 GSILHLIQ-QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 842 ~~~~~~i~-~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+ ..+. .+.+|...+ ...|+|++..+++++.|+++++||++..
T Consensus 230 ~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 230 TG--KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred CC--cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 65 4555 689999886 4489999989999999999999999876
No 190
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=6.6e-07 Score=103.04 Aligned_cols=112 Identities=24% Similarity=0.274 Sum_probs=93.7
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC--ccee-------ecc-CCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCC
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVH-------VDS-SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~-------~l~-gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~ 842 (897)
..+-.+.+.+++..|++|+.||.|++||.. +.++ .+. +..--||+|.|-.+ .|++|.+-|+|++||...
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~ 234 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIF 234 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccC
Confidence 455567778899999999999999999987 2222 111 13345999998765 999999999999999999
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+ .+++.+..|.+.|.+++..+++++++++|.|++|..+...++
T Consensus 235 g--TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 235 G--TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred c--chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 8 588999999999999999999999999999999988877665
No 191
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.48 E-value=6.1e-08 Score=75.33 Aligned_cols=40 Identities=43% Similarity=0.963 Sum_probs=33.9
Q ss_pred cccccccCCC---CceecCCCcccchHHHHHHHhcCCCCCCCCC
Q 002641 165 VCPITTHIFD---DPVTLETGQTYERRAIQEWIERGNSSCPITR 205 (897)
Q Consensus 165 ~CpIC~~l~~---dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr 205 (897)
.|+||++-|. .++.++|||.||..||.+|++. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999994 4566799999999999999987 45999996
No 192
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=98.47 E-value=5.7e-07 Score=98.08 Aligned_cols=34 Identities=12% Similarity=0.479 Sum_probs=31.0
Q ss_pred CCcccccccccCCCCceecCCCcccchHHHHHHH
Q 002641 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWI 194 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~ 194 (897)
++++.||||...|+||++++|||+.|+.|-...+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 5789999999999999999999999999987543
No 193
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.46 E-value=1.3e-07 Score=72.93 Aligned_cols=44 Identities=34% Similarity=0.873 Sum_probs=38.7
Q ss_pred cccccccCCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCccc
Q 002641 165 VCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKL 208 (897)
Q Consensus 165 ~CpIC~~l~~dPV~l~-CGHtFCr~CI~~~~~~~~~~CP~Cr~~~ 208 (897)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999998888875 9999999999999987667899998753
No 194
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.44 E-value=1.5e-06 Score=96.81 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=104.0
Q ss_pred CCCCceeeee--------cccccccceeEeeecccccEEEEecCCCCeEEEeCC-c-ceeeccCC-CCcEEEEEEeCC--
Q 002641 758 LRDINIHMKD--------IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-E-LVHVDSSE-NGKVLSIACFRD-- 824 (897)
Q Consensus 758 ~~~~~~~i~~--------~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~-~l~~l~gH-~~~V~sV~fspd-- 824 (897)
....++.+|+ .+++|+..+.++.+.....+||+++..|-|.|..+. . ...+|... ...|.-+.|+|.
T Consensus 98 G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr 177 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR 177 (673)
T ss_pred CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc
Confidence 3445566775 477888889999999999999999999999999987 3 33334333 345678999985
Q ss_pred -EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 825 -KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 825 -~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
+|.++|.||+|.+||+.... +...-...|..+...++|+|.. .+|+|.+.|+.|.+||++..
T Consensus 178 ~lL~~asd~G~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred eeeEeeccCCeEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 89999999999999999874 3344567799999999999975 68889999999999999875
No 195
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.44 E-value=1e-06 Score=93.86 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=92.2
Q ss_pred eeEeeecccccEEEEecCCCCeEEEeCC-----cceee-----ccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHV-----DSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~-----l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~ 842 (897)
.....|++||.+|..| ....|+++|+. -...+ -.|..+-+.|++|+|- .++.|+...++=|+.-..
T Consensus 161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 3567889999999976 67899999984 11111 2234678999999994 899999998888887777
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCc--cceeeecc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVRSNDSF--TYAIFIQV 895 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~~~--~l~~l~~~ 895 (897)
. .+++.+.||.+.|+-+.|.++|+.|+||+. |-.|-.||++.. .+-.|.++
T Consensus 240 ~--~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh 293 (406)
T KOG2919|consen 240 R--RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH 293 (406)
T ss_pred C--CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence 6 578889999999999999999999999984 778999999874 44444433
No 196
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=2.1e-06 Score=92.97 Aligned_cols=66 Identities=18% Similarity=0.342 Sum_probs=48.4
Q ss_pred CcccccccccC-CCCce---ec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC---CcccHHHHHHHHHH
Q 002641 162 KDFVCPITTHI-FDDPV---TL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL---PKTNYVLKRLIASW 227 (897)
Q Consensus 162 ~el~CpIC~~l-~~dPV---~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~---~~pN~~L~~li~~~ 227 (897)
++..||+|..- +..|- .+ +|||+||..|+..+|..+...||.|+.++....+ +.++..+.+-|+.-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iR 75 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIR 75 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHH
Confidence 45789999983 33443 22 7999999999999988777789999999877662 13666665555533
No 197
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.42 E-value=9.7e-07 Score=101.65 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=96.1
Q ss_pred EeeecccccEEEEecCCCCeEEEeCC--cceeeccC---CCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641 778 YSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSS---ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~g---H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~ 850 (897)
-..+.+..+++++++.|+.|+|||+. +..+.|+| |.+..--|...|. ++++...|.++.++|.-++ .++..
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg--EcvA~ 678 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG--ECVAQ 678 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc--hhhhh
Confidence 34556678899999999999999997 77778876 5677888888886 9999999999999999998 58999
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
..||...|+.+.|.+|-++|+|.+.||.|-||.+...
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999999999999999999999999999999988643
No 198
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.42 E-value=1.5e-06 Score=91.65 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=88.7
Q ss_pred EeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEe---CCEEEEEecCCeEEEEeCCCCcceeEEE
Q 002641 778 YSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACF---RDKIFSGHSDGTIKVWTGRGSILHLIQQ 850 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fs---pd~L~Sgs~DgtIrlWd~~~~~~~~i~~ 850 (897)
...++..+..++++-.+|.+.+-+.+ +.++.+++|.-+.|-..|+ |+.++|||.||.+.-||++... ..+..
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~ 204 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWH 204 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeee
Confidence 34556667789999999999855544 5566899999999999997 5799999999999999999443 33433
Q ss_pred -eeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 002641 851 -IREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 851 -l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~ 886 (897)
-+-|+..|.++.-+|. +.+|++|+.|..|++||.++
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 6779999999988864 78999999999999999985
No 199
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=4.7e-07 Score=102.78 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=93.9
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC-------
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR------- 841 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~------- 841 (897)
..+....+.+.|..|+.|+.|+.+..+|+. +..+++.-|...|.+|+|++. +++|||.||++.|+-..
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 444555666789999999999999999987 688888999999999999996 99999999999988543
Q ss_pred CCcceeEEEeeccCCC----eEEEEEccCCCEEEEEeCCCcEEEE
Q 002641 842 GSILHLIQQIREHTKA----VTGLAILQSGEMLYSGSLDKTARVR 882 (897)
Q Consensus 842 ~~~~~~i~~l~gH~~~----V~slafspdg~~L~SgS~D~tIrlW 882 (897)
+....++..++||... |..+.|+|..-+|+|++.||+||+|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 2224667889999886 8999999999999999999999999
No 200
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.40 E-value=8.6e-07 Score=66.46 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=36.5
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
+++.++.+|.+.|++++|+|+++.|+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47889999999999999999999999999999999998
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.40 E-value=3.3e-07 Score=101.48 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=94.3
Q ss_pred ecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-C-EEEEEecCCeEEEEeCCCCcceeEEEeeccCC
Q 002641 781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-D-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (897)
Q Consensus 781 ~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-d-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~ 856 (897)
|-|.--+|+++|..|.++.-|+. +.+..+....+.+..++-+| + .+-.|+..|+|.+|..... .++..+-.|.+
T Consensus 217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--ePLvKiLcH~g 294 (545)
T KOG1272|consen 217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--EPLVKILCHRG 294 (545)
T ss_pred ccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--chHHHHHhcCC
Confidence 34444578889999999988987 88888888889999999999 4 9999999999999999877 46667778999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641 857 AVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAI 891 (897)
Q Consensus 857 ~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~ 891 (897)
+|+++++.++|+++++.|.|..++|||+++. .+.+
T Consensus 295 ~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 295 PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred CcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 9999999999999999999999999999986 4443
No 202
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.38 E-value=3e-06 Score=99.60 Aligned_cols=104 Identities=16% Similarity=0.248 Sum_probs=93.9
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~ 859 (897)
.-+.|+.|+.+|.+++||++ +.+++++++...|+++.-+| |.++.|..+|+|.+++++.+ +.+.+|+.-.+.|+
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVT 248 (910)
T ss_pred heeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEcccccee
Confidence 56789999999999999998 99999999999999999999 69999999999999999998 57889986679999
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEeCCCccc
Q 002641 860 GLAILQSGE-MLYSGSLDKTARVRSNDSFTY 889 (897)
Q Consensus 860 slafspdg~-~L~SgS~D~tIrlWdi~~~~l 889 (897)
+++|..||+ .+++|+..|.+-+||+....+
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl 279 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKL 279 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCee
Confidence 999999995 667777889999999988733
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.38 E-value=3.4e-06 Score=92.93 Aligned_cols=104 Identities=29% Similarity=0.420 Sum_probs=87.9
Q ss_pred ccccc-EEEEecC-CCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEEeCCCCcceeEEEeec
Q 002641 782 AFEMV-KVLSNGH-DSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRGSILHLIQQIRE 853 (897)
Q Consensus 782 s~d~~-~LaSgs~-DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~~~~~~~i~~l~g 853 (897)
.+++. .++..+. |+.+.+||.. .....+.+|...|..++|+|+ .+++++. |+++++|++... ..+..+.+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAG 196 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeecc
Confidence 44555 5555444 9999999986 677788899999999999997 7888886 999999999985 46888999
Q ss_pred cCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCc
Q 002641 854 HTKAVTGLAILQSGE-MLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 854 H~~~V~slafspdg~-~L~SgS~D~tIrlWdi~~~ 887 (897)
|...|.+++|+|++. .+++++.|++|++||...+
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 999999999999998 6666699999999998866
No 204
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.37 E-value=2e-06 Score=95.75 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=90.2
Q ss_pred cceeEeeeccccc-EEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce
Q 002641 774 ELRKYSPLAFEMV-KVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 774 ~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
..++...+++..+ .|.++|++|.|.+||+. ...+-...|..+...|+|+|. +|+|.|.|..|.+||+....
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-- 242 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-- 242 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--
Confidence 4455666666544 57789999999999997 455556679999999999994 99999999999999999752
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
....+. ...+.++|+|.++|.+|+.|+..|.|..||++..
T Consensus 243 s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 243 STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 222222 3457889999999999999999999999999975
No 205
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.36 E-value=3.4e-07 Score=68.02 Aligned_cols=39 Identities=44% Similarity=1.005 Sum_probs=35.8
Q ss_pred ccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCC
Q 002641 166 CPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPIT 204 (897)
Q Consensus 166 CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~C 204 (897)
|+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998556679987
No 206
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.34 E-value=1.9e-06 Score=99.42 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=96.5
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC---c---ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---E---LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~---~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd 839 (897)
.+.+|.-.+.-..|++||++|+|.|.|+++.+|... . -....+.|+.-|++..|+|+ +|+|+|.|.+|++|.
T Consensus 567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 477889999999999999999999999999999975 1 12236689999999999998 799999999999999
Q ss_pred CCCCcceeEE--EeeccCCCeEEEEEccC-----CCEEEEEeCCCcEEEEeCC
Q 002641 840 GRGSILHLIQ--QIREHTKAVTGLAILQS-----GEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 840 ~~~~~~~~i~--~l~gH~~~V~slafspd-----g~~L~SgS~D~tIrlWdi~ 885 (897)
......+.+. ....+..+|+.++|.|- +..++.|-..|.|.+|...
T Consensus 647 ~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 647 EPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 9876212222 34458899999999873 3367777789999999965
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.32 E-value=1.7e-06 Score=92.32 Aligned_cols=118 Identities=18% Similarity=0.105 Sum_probs=100.4
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd 839 (897)
+++..|...++.+.+++..++|++++.|....||... +..-++..|+..+++|.|+|. .|++||.-..|.||-
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy 128 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCY 128 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEE
Confidence 4667778888889999999999999999999999983 555667789999999999995 999999999999999
Q ss_pred CCCCcc--eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 840 GRGSIL--HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 840 ~~~~~~--~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi 884 (897)
....+- ...+.-+.++..|++++|+|++-.|+.||.|+.+|++..
T Consensus 129 ~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 129 YEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 886541 122344568889999999999999999999999999863
No 208
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=3.7e-06 Score=100.82 Aligned_cols=109 Identities=23% Similarity=0.264 Sum_probs=89.6
Q ss_pred cccEEEEecCCCCeEEEeCC-----cceeeccCCCCc--EEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeec
Q 002641 784 EMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGK--VLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIRE 853 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~--V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~g 853 (897)
.|+.|+.|..||.|++||.+ -.+.+.+.|+.. |..+.+.+. .|+|||.||.|++||++.......-+...
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 58899999999999999976 478888899887 999999873 79999999999999999842122333333
Q ss_pred cC--C-CeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeee
Q 002641 854 HT--K-AVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFI 893 (897)
Q Consensus 854 H~--~-~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~ 893 (897)
|. + ..+++..+++...++|||. +.|+||++.+..+..++
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc
Confidence 43 3 5899999999999999998 99999999887665554
No 209
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.1e-07 Score=102.13 Aligned_cols=69 Identities=25% Similarity=0.397 Sum_probs=60.7
Q ss_pred CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCC-CCCCcccHHHHHHHHHHH
Q 002641 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSS-TKLPKTNYVLKRLIASWQ 228 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~-~~~~~pN~~L~~li~~~~ 228 (897)
.+..++.||||+++++..+++ .|+|.||+.||-.-+..++..||.||+.+.. ..+ +++.....+|.+.-
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL-r~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL-RIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC-CCCccHHHHHHHHh
Confidence 577899999999999999988 8999999999999888889999999999754 455 78888888887764
No 210
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.29 E-value=2.2e-05 Score=103.08 Aligned_cols=194 Identities=13% Similarity=0.201 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHhcc-CChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCc----hHHHHHHHHhCCChhh
Q 002641 312 PAVINGFVEILFNS-VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGL----LEAVVLIDLLRPSTRT 386 (897)
Q Consensus 312 ~~a~~~~ke~L~~s-l~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~----~ea~~LL~~L~~~~~~ 386 (897)
...+..+.+.|.+. ...+.-+.+...+.++.+.++..+..|....+.+.-++.+|++|. ..|..+|..|...+++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 34566777888763 345557777888888988888889999888999999999998873 3444488888888776
Q ss_pred HHH---HhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCC-cccccccch-hhhccchhHHHHHHhhhcchHHH
Q 002641 387 LIE---MDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDS-EESIVSSIA-NTIVSSKVFESVISSLEAEWAEE 461 (897)
Q Consensus 387 i~~---~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~-d~~~~~~~~-~~~~s~~~~~~l~~~~~~~~~~~ 461 (897)
... -+.+|.|+++|++++.. ...+||-+|+.....+. |+ |. ..++++|++|.|+..++.|+..+
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~e------aKe~AA~AL~sLS~~~~~D~-----~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAE------AQKAAAEAIYAVSSGGLSDH-----VGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHH------HHHHHHHHHHHHHcCcchhh-----hhhhhhhhcCChHHHHHHHhCCchhh
Confidence 654 47788899999988655 56788888888776553 32 33 34568999999999999997655
Q ss_pred HH--HHHHHHhhhccccCc-chhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHh
Q 002641 462 RI--AAVGILLRCMQEDGK-CRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVK 516 (897)
Q Consensus 462 ~~--~~~~il~~c~~~~~~-cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~ 516 (897)
.. ..+...|+++..+.. .+..+.+...+.+++++|.+++...+++|+..|.-+..
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Las 218 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMM 218 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 42 111223333333333 44577899999999999999888889999887776643
No 211
>PHA02926 zinc finger-like protein; Provisional
Probab=98.28 E-value=4.5e-07 Score=92.17 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=41.1
Q ss_pred CCCCcccccccccCCCC---------ceecCCCcccchHHHHHHHhcC-----CCCCCCCCcccC
Q 002641 159 TPPKDFVCPITTHIFDD---------PVTLETGQTYERRAIQEWIERG-----NSSCPITRQKLS 209 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~d---------PV~l~CGHtFCr~CI~~~~~~~-----~~~CP~Cr~~~~ 209 (897)
...++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 35668999999998754 3566999999999999998742 245999999865
No 212
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.25 E-value=7.7e-07 Score=104.18 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=96.8
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCC-Cc
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRG-SI 844 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~-~~ 844 (897)
.+.||..-+.-.+.+.+..+++++|.|..|++|.+. ..+.++.||+|.|++++|+|-. +.+.|||+++||.+- ..
T Consensus 227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~ 304 (1113)
T KOG0644|consen 227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPR 304 (1113)
T ss_pred cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccccccc
Confidence 355666666666666677789999999999999987 7889999999999999999955 788999999999880 00
Q ss_pred --------------------------------------------------------------------------------
Q 002641 845 -------------------------------------------------------------------------------- 844 (897)
Q Consensus 845 -------------------------------------------------------------------------------- 844 (897)
T Consensus 305 ~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 305 IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeeccc
Confidence
Q ss_pred ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 845 LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
+...+.+.||...++-+.|+|-. +...+++.||.+.|||+-.| ..+.+
T Consensus 385 g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 385 GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 12233445788888889999854 66778999999999999888 54443
No 213
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.25 E-value=6.5e-07 Score=69.57 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=34.8
Q ss_pred cccccccCC---CCceecCCCcccchHHHHHHHhcCCCCCCCCCc
Q 002641 165 VCPITTHIF---DDPVTLETGQTYERRAIQEWIERGNSSCPITRQ 206 (897)
Q Consensus 165 ~CpIC~~l~---~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~ 206 (897)
.|+||.+.+ ..|++++|||+||..|+.+.. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999999 357788999999999999977 34568999985
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.25 E-value=1.3e-05 Score=85.53 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=84.0
Q ss_pred cccEEEE-ecCCCCeEEEeCC-cc---eeeccCCCCcEEEEEEeCC--EEEEEecCCe-EEEEeCCCCcceeEEEeecc-
Q 002641 784 EMVKVLS-NGHDSSADFWNHR-EL---VHVDSSENGKVLSIACFRD--KIFSGHSDGT-IKVWTGRGSILHLIQQIREH- 854 (897)
Q Consensus 784 d~~~LaS-gs~DgtIklWd~~-~~---l~~l~gH~~~V~sV~fspd--~L~Sgs~Dgt-IrlWd~~~~~~~~i~~l~gH- 854 (897)
+...||- |-.-|.|+|-|+. .. -..+..|.+.|.||+.+.+ ++||+|..|| |||||..++ ..+++++--
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--~~l~E~RRG~ 224 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--TLLQELRRGV 224 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC--cEeeeeecCC
Confidence 3444554 5556999999987 22 3678899999999999975 9999999998 699999998 467777643
Q ss_pred -CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 855 -TKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 855 -~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
...|.|++|||++.+|+.+|.-||+.|+.++..
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 346999999999999999999999999999874
No 215
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=2.2e-06 Score=103.96 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=97.7
Q ss_pred cceeEeeecccccEEEEecCCC---CeEEEeCC---cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCCc
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDS---SADFWNHR---ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~Dg---tIklWd~~---~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~~ 844 (897)
....+.||..+...++.++.|. .|.+||++ ..++++++|...|.++.|++ | +++|++.|+.|-+|+..++
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg- 286 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG- 286 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-
Confidence 3556778887788888777763 68999987 78889999999999999997 3 9999999999999999998
Q ss_pred ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 845 LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
+.+..+....+++..+.|+|.. ..++.+|.||.|-|+.+.++
T Consensus 287 -Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 287 -EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred -eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 5788888888999999999975 58889999999999999876
No 216
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.22 E-value=5.4e-06 Score=87.35 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=81.4
Q ss_pred cEEEEecCCCCeEEEeCC------cceeecc-----CCCCcEEEEEEe---CCEEEEEecCCeEEEEeCCCCc-ceeEEE
Q 002641 786 VKVLSNGHDSSADFWNHR------ELVHVDS-----SENGKVLSIACF---RDKIFSGHSDGTIKVWTGRGSI-LHLIQQ 850 (897)
Q Consensus 786 ~~LaSgs~DgtIklWd~~------~~l~~l~-----gH~~~V~sV~fs---pd~L~Sgs~DgtIrlWd~~~~~-~~~i~~ 850 (897)
.+|||.| ..+|+|.+. .+...+. .+.+++++..|+ |+++.+.|-|-|..|||+.++. ......
T Consensus 114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 4566654 578999875 1111121 246789999998 4599999999999999999872 234567
Q ss_pred eeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCccceee
Q 002641 851 IREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSFTYAIF 892 (897)
Q Consensus 851 l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~~l~~l 892 (897)
+-.|.+.|..++|..+| +.|+|.|.||++|+||++.-...++
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI 234 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE
Confidence 88999999999999866 7899999999999999998644443
No 217
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=6.2e-07 Score=101.22 Aligned_cols=51 Identities=27% Similarity=0.505 Sum_probs=45.9
Q ss_pred cccccccccCCCCceecCCCcccchHHHHHHHhcC----CCCCCCCCcccCCCCC
Q 002641 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERG----NSSCPITRQKLSSTKL 213 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~----~~~CP~Cr~~~~~~~~ 213 (897)
+..||||++-..-|+.+.|||.||..||.+||..+ ...||+|+..+..+.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 78999999999999999999999999999999853 4579999999887665
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.21 E-value=3.8e-06 Score=94.66 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=86.6
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC------------------------------cceeeccCCCCcEEEEEEeCC
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR------------------------------ELVHVDSSENGKVLSIACFRD 824 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~------------------------------~~l~~l~gH~~~V~sV~fspd 824 (897)
.....|...+...++.+-.+|...++|.. ..+..+.-..+.|...+|+||
T Consensus 222 vT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 222 VTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred eEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC
Confidence 33445555566677777788888888632 011111123457888899998
Q ss_pred --EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 825 --KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 825 --~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+||+.|.||.+||+|..+. .++..++..-+...||+|||||++|++|+.|--|.||.+..+
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred CceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 9999999999999999987 466777777888999999999999999999999999998766
No 219
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.21 E-value=5.3e-07 Score=73.86 Aligned_cols=44 Identities=41% Similarity=0.902 Sum_probs=31.1
Q ss_pred CCcccccccccCCCCceec-CCCcccchHHHHHHHhc-CCCCCCCC
Q 002641 161 PKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPIT 204 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~-~~~~CP~C 204 (897)
.-.+.|||++..|.|||+. .|||+|++.+|.+|+.. +...||+.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 3478999999999999985 99999999999999943 34579983
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=7.3e-06 Score=98.41 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=82.7
Q ss_pred eEeeecccccEEEEecCCCCeEEEeCC--cceeecc-CCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCcc-eeEE
Q 002641 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS-SENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSIL-HLIQ 849 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~-gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~-~~i~ 849 (897)
.+..+.....+|+++|.-..|+|||.. .+.+.+. +....|+++.-+- ++++.|..||.||+||.+.... ..+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 333344444445555558999999987 3333333 3355677775542 4999999999999999996531 3578
Q ss_pred EeeccCCC--eEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 850 QIREHTKA--VTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 850 ~l~gH~~~--V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
..+.|+.. |..+.+.+.| ..|+|||.||.|++||++..
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 89999998 9999999877 45999999999999999985
No 221
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.19 E-value=4.5e-06 Score=91.59 Aligned_cols=103 Identities=21% Similarity=0.157 Sum_probs=83.3
Q ss_pred EEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE-eeccCCCeEEEE
Q 002641 787 KVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ-IREHTKAVTGLA 862 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~-l~gH~~~V~sla 862 (897)
.....++...+.+|... ......-||-+-++.|+|+|| +++++..|+.||+-..... ..+.. +-||+.-|+.++
T Consensus 124 v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTIS 201 (390)
T ss_pred EEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--cchhhhccccHhheeeee
Confidence 34445666788888876 566667799999999999998 9999999999998777654 23444 457999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 863 ILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 863 fspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
.- +++.|+|||.|+++++||+++| ++.+|
T Consensus 202 l~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 202 LT-DNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ec-cCceeeecCCCCcEEEEecccCCccccc
Confidence 95 4667999999999999999999 66554
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.19 E-value=4.6e-06 Score=98.29 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=97.6
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~ 842 (897)
...|...+..+..+|-+..++..+.|.+++||... ..+..+..+...|++++|||. .|+++..||.|.+||+..
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 34456777778888766655444449999999976 677777888888999999985 899999999999999997
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
....++...+-+....+.+.|++.|+.|+.|...|++.+|++...
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 655667777667667788899999999999999999999999754
No 223
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=1.5e-05 Score=90.88 Aligned_cols=132 Identities=13% Similarity=0.138 Sum_probs=95.6
Q ss_pred CCceeeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC----EEEEEe---
Q 002641 760 DINIHMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD----KIFSGH--- 830 (897)
Q Consensus 760 ~~~~~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd----~L~Sgs--- 830 (897)
.......-++.||.+.+..+...+.|.+|+|||.||+|+||.+. .++++++- .+.|.||+|+|. .|+.+-
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 33355567889999999999999999999999999999999986 67766543 568999999984 333321
Q ss_pred -----------------------------cCCeEEEEeCCCCc--ceeEEEeeccCCCeEEEEEccCCCEEEEEeCC---
Q 002641 831 -----------------------------SDGTIKVWTGRGSI--LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD--- 876 (897)
Q Consensus 831 -----------------------------~DgtIrlWd~~~~~--~~~i~~l~gH~~~V~slafspdg~~L~SgS~D--- 876 (897)
-|+.+-.|.-.... -.-++..-.|.+.|..+.|+..|.+|++...|
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 12333445433110 01134555689999999999999999998765
Q ss_pred CcEEEEeCCCc-cceee
Q 002641 877 KTARVRSNDSF-TYAIF 892 (897)
Q Consensus 877 ~tIrlWdi~~~-~l~~l 892 (897)
+.|.|.++..+ ....|
T Consensus 546 ~~VliHQLSK~~sQ~PF 562 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPF 562 (733)
T ss_pred ceEEEEecccccccCch
Confidence 47889998776 33444
No 224
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.17 E-value=3.2e-06 Score=94.96 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=92.6
Q ss_pred eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceee-ccCCCCcEEEEEEeCC---EEEEEecCCeEEEEe
Q 002641 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHV-DSSENGKVLSIACFRD---KIFSGHSDGTIKVWT 839 (897)
Q Consensus 764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~-l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd 839 (897)
+++.....|...+.+-.+++||.-++|++.||.|++|.-..+++. +.-...+|+|++|.|+ .+++.+..-.|| -
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK--p 172 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK--P 172 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe--e
Confidence 344556667777777788999999999999999999997643333 3334678999999996 666655444444 4
Q ss_pred CCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 840 GRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 840 ~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+... ..+-..+.|.+-|.++.|++..+.++||+.|-..++||--+.
T Consensus 173 L~~n--~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~ 218 (737)
T KOG1524|consen 173 LAAN--SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA 218 (737)
T ss_pred cccc--cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc
Confidence 4433 235568999999999999999999999999999999997654
No 225
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=9e-06 Score=87.47 Aligned_cols=137 Identities=14% Similarity=0.181 Sum_probs=96.7
Q ss_pred CCCCCceeeeecccccc---------cceeEeeecc--cccEEEEec----CCCCeEEEeCC---cceee-ccCCCCcEE
Q 002641 757 GLRDINIHMKDIMKGLR---------ELRKYSPLAF--EMVKVLSNG----HDSSADFWNHR---ELVHV-DSSENGKVL 817 (897)
Q Consensus 757 ~~~~~~~~i~~~l~~~~---------~~~~~~~~s~--d~~~LaSgs----~DgtIklWd~~---~~l~~-l~gH~~~V~ 817 (897)
+..+.++++||+....+ ....+.-+.. .++.++.|. .|-.+.+||++ +.+.. ...|...|+
T Consensus 90 ~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT 169 (376)
T KOG1188|consen 90 CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT 169 (376)
T ss_pred eccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence 44566778887643311 1112222222 455666665 35678999998 43443 456999999
Q ss_pred EEEEeC---CEEEEEecCCeEEEEeCCCCc-ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc-ccee
Q 002641 818 SIACFR---DKIFSGHSDGTIKVWTGRGSI-LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF-TYAI 891 (897)
Q Consensus 818 sV~fsp---d~L~Sgs~DgtIrlWd~~~~~-~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~-~l~~ 891 (897)
+|.|+| ++|+|||.||-|.|+|++... -..+.....|...|.++.|..++ +.|.+-+.+.+..+|++..+ +...
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~ 249 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW 249 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence 999998 399999999999999998652 12233344588889999999887 56889999999999999988 5444
Q ss_pred ee
Q 002641 892 FI 893 (897)
Q Consensus 892 l~ 893 (897)
+.
T Consensus 250 ~~ 251 (376)
T KOG1188|consen 250 LE 251 (376)
T ss_pred cc
Confidence 43
No 226
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9.5e-07 Score=92.06 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=44.8
Q ss_pred CCcccccccccCCCCceecCCCcccchHHHHH-HHhcCCCCCCCCCcccCCCCC
Q 002641 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQE-WIERGNSSCPITRQKLSSTKL 213 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~-~~~~~~~~CP~Cr~~~~~~~~ 213 (897)
..++.|+||++.+.+|+.++|||.||..||.. |-.+....||.||+......+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 56899999999999999999999999999999 555444469999988765443
No 227
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.15 E-value=1.1e-05 Score=86.09 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=99.4
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeC-CCCcc
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTG-RGSIL 845 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~-~~~~~ 845 (897)
....+-.++.|+..+|.+-....|.||... +..++++.|...|+.|+|+|. .|++|+.|.--.||.. ..+..
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 445667788899999999999999999865 688999999999999999995 9999999999999999 55555
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
++.-.+..|+.++++|.|+|.++.|+.||..+.|-||=...
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 66677888999999999999999999999999999986654
No 228
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.11 E-value=2e-05 Score=96.18 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=81.2
Q ss_pred eEeeecccccEEEEecCCCCeEEEeCCc---------ceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCc-
Q 002641 777 KYSPLAFEMVKVLSNGHDSSADFWNHRE---------LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI- 844 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~DgtIklWd~~~---------~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~- 844 (897)
.....++++.+++|||.||+||+||..+ ..-++....+.+.++.+.+ +.+|.|+.||.|++.++.-.+
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 3333445679999999999999999862 2222323456777777665 599999999999999887511
Q ss_pred ------------------------------c-eeE--E-------------------EeeccCCCeEEEEEccCCCEEEE
Q 002641 845 ------------------------------L-HLI--Q-------------------QIREHTKAVTGLAILQSGEMLYS 872 (897)
Q Consensus 845 ------------------------------~-~~i--~-------------------~l~gH~~~V~slafspdg~~L~S 872 (897)
. ..+ . .+....+.|++++.+|.++++++
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 0 000 0 01123568999999999999999
Q ss_pred EeCCCcEEEEeCCCc
Q 002641 873 GSLDKTARVRSNDSF 887 (897)
Q Consensus 873 gS~D~tIrlWdi~~~ 887 (897)
|+.-|.+.+||++=+
T Consensus 1213 Gts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFR 1227 (1431)
T ss_pred ecCCceEEEEEeecC
Confidence 999999999999866
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.10 E-value=2.4e-05 Score=89.87 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=89.9
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEe-----------------------
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACF----------------------- 822 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fs----------------------- 822 (897)
+++++|++.+.+++++.||+++|||+.|+.|.+|+-. +-+- --.|++.|.|+.|+
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~ 125 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS 125 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-eeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence 5789999999999999999999999999999999965 1111 11344445544444
Q ss_pred ----------------CC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC-----CEEEEEeCCCcE
Q 002641 823 ----------------RD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG-----EMLYSGSLDKTA 879 (897)
Q Consensus 823 ----------------pd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg-----~~L~SgS~D~tI 879 (897)
.| +++-|..||||.+-+......-.+....|.+.+|++++|+|.. ..++...+..|+
T Consensus 126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 43 5666778999988876655323345556788899999999962 578888888899
Q ss_pred EEEeCCCc
Q 002641 880 RVRSNDSF 887 (897)
Q Consensus 880 rlWdi~~~ 887 (897)
.++.+.+.
T Consensus 206 SFy~LsG~ 213 (1081)
T KOG1538|consen 206 SFYQLSGK 213 (1081)
T ss_pred EEEEecce
Confidence 88887654
No 230
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=3.3e-05 Score=84.05 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=85.5
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccC---CCCcEEEEEEeCC--EEEE-EecC-CeEEEEeCCCCcceeEEEeecc
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSS---ENGKVLSIACFRD--KIFS-GHSD-GTIKVWTGRGSILHLIQQIREH 854 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~g---H~~~V~sV~fspd--~L~S-gs~D-gtIrlWd~~~~~~~~i~~l~gH 854 (897)
+-++++..=.+. |.|||++ ++++++.. |...+.++.++.+ +++- ++.+ |.|.+||+.+- +.+..+..|
T Consensus 96 Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH 172 (391)
T KOG2110|consen 96 NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAH 172 (391)
T ss_pred ccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEec
Confidence 455666664444 9999998 67776654 4455777766664 5544 4444 89999999886 688999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCc-cceeeecc
Q 002641 855 TKAVTGLAILQSGEMLYSGSLDKT-ARVRSNDSF-TYAIFIQV 895 (897)
Q Consensus 855 ~~~V~slafspdg~~L~SgS~D~t-IrlWdi~~~-~l~~l~~~ 895 (897)
.+.+.+++|+++|.+|+++|..|| |||+.+.+| .+..|++-
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG 215 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG 215 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC
Confidence 999999999999999999999885 689999999 77878764
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=6.8e-06 Score=92.63 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=70.5
Q ss_pred cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcE
Q 002641 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTA 879 (897)
Q Consensus 804 ~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tI 879 (897)
.....++||+|.|.|+.|+.| +|+|||.|-.+-|||....+ .....-.||+..|.|++|-|. .+.++||+.|+.|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 355668899999999999986 99999999999999998653 233445799999999999985 5789999999999
Q ss_pred EEEeCCC
Q 002641 880 RVRSNDS 886 (897)
Q Consensus 880 rlWdi~~ 886 (897)
+++|+..
T Consensus 120 ~lfdl~~ 126 (758)
T KOG1310|consen 120 KLFDLDS 126 (758)
T ss_pred EEEeccc
Confidence 9999984
No 232
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.08 E-value=1.7e-06 Score=92.92 Aligned_cols=67 Identities=16% Similarity=0.362 Sum_probs=56.9
Q ss_pred CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCC----CCcccHHHHHHHHHH
Q 002641 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASW 227 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~----~~~pN~~L~~li~~~ 227 (897)
++....+|++|..+|.||.++ .|=||||++||.+++.. ...||.|+..+.... + +++..|+.+|-++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni-~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNI-RSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccC-CcchHHHHHHHHH
Confidence 567788999999999999987 99999999999999997 668999998875443 4 6788888887654
No 233
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.05 E-value=7.6e-05 Score=83.83 Aligned_cols=125 Identities=13% Similarity=0.051 Sum_probs=94.7
Q ss_pred CCCCCceeeeeccc-----ccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEE
Q 002641 757 GLRDINIHMKDIMK-----GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIF 827 (897)
Q Consensus 757 ~~~~~~~~i~~~l~-----~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~ 827 (897)
+.++....+|+-.+ .......+.++.|.| .+|.|...|...+.|.. ..+..... +..+.+|+|+|+ +||
T Consensus 386 ~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 386 CGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLA 463 (626)
T ss_pred ccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEE
Confidence 44666666765110 112445566777778 89999999999999987 33333333 889999999997 999
Q ss_pred EEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 828 SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 828 Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
.||.|+.|.+|.+..+.......-+.|..+|+.+.||+|++++.+-|.|..|-.|.
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 99999999999998553233344444558999999999999999999999999993
No 234
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=5.9e-06 Score=91.07 Aligned_cols=73 Identities=30% Similarity=0.328 Sum_probs=63.9
Q ss_pred EEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 817 LSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 817 ~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
.+|+|+++ .+++|+.||++|+|+.... ..+..+..|.+.|.++.|+|||+.|+|-+.| ..+||++.+| .++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 67888886 9999999999999997665 3566778899999999999999999999999 8999999998 55443
No 235
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.6e-06 Score=102.49 Aligned_cols=55 Identities=15% Similarity=0.349 Sum_probs=49.6
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~ 213 (897)
....-++||.|..-++|.|++.|||.||..|+..........||.|+..|...++
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 3556789999999999999999999999999999888777799999999988776
No 236
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.02 E-value=1.1e-05 Score=60.38 Aligned_cols=35 Identities=40% Similarity=0.523 Sum_probs=33.0
Q ss_pred ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 805 ~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd 839 (897)
++.++.+|.+.|++++|+|+ +++||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57789999999999999997 999999999999997
No 237
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.02 E-value=4.8e-05 Score=85.39 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=94.0
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcce
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
+..+|.+..+-...-++...+++++.|+.+++|+-.++..+.. -..++.|+.|+|. .++.|...|.--|.|..+. .
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~--~ 439 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQ--D 439 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecccc--e
Confidence 3455666666666677888999999999999999335444332 2567889999996 9999999999999999986 3
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+..-.. +..+++++|+|+|.+|+.||.|+.|.+|-+..+
T Consensus 440 lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 440 LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 4554444 889999999999999999999999999998754
No 238
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.02 E-value=2e-05 Score=90.50 Aligned_cols=111 Identities=18% Similarity=0.290 Sum_probs=85.3
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC-cc----
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS-IL---- 845 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~-~~---- 845 (897)
.+.-+.+.|||..++.+. +..+.+||.+ ..+.+++||++.|+||+|+.| .++||+.|..|-+|+-+-. .+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 455577889999887764 4567799997 899999999999999999987 9999999999999987622 10
Q ss_pred -eeEEE--e-------------------------eccC--CCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 846 -HLIQQ--I-------------------------REHT--KAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 846 -~~i~~--l-------------------------~gH~--~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
..++- | .-|+ ..|.+++|..||.+|+-|-.||||.+-+-.+
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 00110 0 0122 2577889999999999999999999887443
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.00 E-value=7.4e-05 Score=77.45 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=65.8
Q ss_pred eEEEeCC---cceeeccC-CCCcEEEEEEeCC--E--EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCC
Q 002641 797 ADFWNHR---ELVHVDSS-ENGKVLSIACFRD--K--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (897)
Q Consensus 797 IklWd~~---~~l~~l~g-H~~~V~sV~fspd--~--L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~ 868 (897)
..+|.++ .....+.- ..+.|.+++|+|+ . +++|..++.|.+||++. ..+..+. +..+..+.|+|+|+
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEeEeec--CCCceEEEECCCCC
Confidence 4455543 34444433 3567999999996 4 44566788999999974 3556664 56788999999999
Q ss_pred EEEEEeCC---CcEEEEeCCCc-cceee
Q 002641 869 MLYSGSLD---KTARVRSNDSF-TYAIF 892 (897)
Q Consensus 869 ~L~SgS~D---~tIrlWdi~~~-~l~~l 892 (897)
+++.|+.+ |.+.+||+++. .+..+
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~ 141 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTF 141 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeecc
Confidence 99999854 56999999976 54444
No 240
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=5e-05 Score=84.53 Aligned_cols=120 Identities=9% Similarity=0.018 Sum_probs=87.4
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcce
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~ 846 (897)
....++.|-|....+++++.|++++||.++ ..++.+.-...+|.+..|.|+ .++++|.-.....||+.+.+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 445566666777788888888888888876 344444444678888888885 7888888888888888765411
Q ss_pred eE-----------E-----------Eeec--------------------cCCCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 847 LI-----------Q-----------QIRE--------------------HTKAVTGLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 847 ~i-----------~-----------~l~g--------------------H~~~V~slafspdg~~L~SgS~D~tIrlWdi 884 (897)
.+ . .+.| -.+.|+.+.|+.||+.|+..+.+|.|.+||+
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEec
Confidence 00 1 1112 1346888999999999999999999999999
Q ss_pred CCc-cceeee
Q 002641 885 DSF-TYAIFI 893 (897)
Q Consensus 885 ~~~-~l~~l~ 893 (897)
+.. ++.+|.
T Consensus 374 ~~~~~~~rf~ 383 (514)
T KOG2055|consen 374 RQNSCLHRFV 383 (514)
T ss_pred CCcceEEEEe
Confidence 988 666654
No 241
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.98 E-value=1.9e-05 Score=82.48 Aligned_cols=110 Identities=21% Similarity=0.308 Sum_probs=86.0
Q ss_pred EEEEecCCCCeEEEeCC------------cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCC--cceeEEE
Q 002641 787 KVLSNGHDSSADFWNHR------------ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS--ILHLIQQ 850 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~------------~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~--~~~~i~~ 850 (897)
.++.|..+|.+-+||+. +.......|..+|.++.|.+ +.=++|+.|..+-.|++... ..+.-..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 46778889999999986 23444557999999999987 47888999999999998743 2222222
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeeccc
Q 002641 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVV 896 (897)
Q Consensus 851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~ 896 (897)
..-.+-.|..+.+-||++.++|+++|+.||||+.++. .+.+|+.+.
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs 293 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS 293 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh
Confidence 3333446888999999999999999999999999998 888877653
No 242
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.93 E-value=3e-05 Score=87.41 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=80.0
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeE
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLI 848 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i 848 (897)
+.|.+++-.+.+++..+.|+||+.|-..++||.. ..+.+-..|..+|++|+|+||.++.-++-++.|+
T Consensus 183 kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~----------- 251 (737)
T KOG1524|consen 183 RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF----------- 251 (737)
T ss_pred eccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeee-----------
Confidence 3455677778888889999999999999999976 8888888999999999999995554444455552
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrl 881 (897)
-+...+.|..++||+||..++.|...|.+.+
T Consensus 252 --~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 --SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred --cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 1235678999999999999999999887764
No 243
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=9.9e-05 Score=82.25 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=88.7
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~ 850 (897)
......+++++.+|+..|..|.|.|.... +.+.+++ -.+.|..++|+.| .|+.++.+|.|.+||++.. .+++.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--~~~~r 381 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN--SCLHR 381 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc--ceEEE
Confidence 44555678899999999999999998866 5555543 3688999999987 8888888999999999998 57888
Q ss_pred eeccCC-CeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 851 IREHTK-AVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 851 l~gH~~-~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
|....+ .-++++.+++|.+|++||..|.|.|||..+
T Consensus 382 f~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 382 FVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 775433 236778889999999999999999999654
No 244
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=9.9e-06 Score=91.42 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=58.9
Q ss_pred CCCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCC----CCcccHHHHHHHHHHHHh
Q 002641 158 HTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK----LPKTNYVLKRLIASWQEQ 230 (897)
Q Consensus 158 ~~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~----~~~pN~~L~~li~~~~~~ 230 (897)
..+..+|.|-||...+.+||+++|||+||..||.+.+. ....||.||..+.... ...+|+.+..+|.+|+..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999777 4568999999876422 112377777888888764
No 245
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.0001 Score=85.89 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=78.7
Q ss_pred ccccceeEeeecccccEEEEecCC---CCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEE-ecCCeEEEE--
Q 002641 771 GLRELRKYSPLAFEMVKVLSNGHD---SSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSG-HSDGTIKVW-- 838 (897)
Q Consensus 771 ~~~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sg-s~DgtIrlW-- 838 (897)
.+...+....++|||++|+..+.+ ..|.+||+. +.+..+.+| ..+++|+|| .|+.+ +.||.+.||
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEE
Confidence 344556677789999999987754 369999986 233334444 346899997 56655 568877666
Q ss_pred eCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q 002641 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDS 886 (897)
Q Consensus 839 d~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~ 886 (897)
|+.++. ...+..|...+.+..|+|||+.|+.++ .++..+||++..
T Consensus 278 d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 278 GANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred ECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 555553 455667777888999999999877665 578889998754
No 246
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=8e-05 Score=86.70 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=71.0
Q ss_pred CCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecC---CeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC
Q 002641 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG 867 (897)
Q Consensus 794 DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~D---gtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg 867 (897)
+..|.+||.+ .....+..|...+.++.|+|| .|+.++.+ ..|++||+.++....+..+.+|.. .++|+|||
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~---~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG---APAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC---ceeECCCC
Confidence 5789999987 445667888889999999998 67776654 479999999875444555666543 67999999
Q ss_pred CEEEEEe-CCCcEEEE--eCCCccceee
Q 002641 868 EMLYSGS-LDKTARVR--SNDSFTYAIF 892 (897)
Q Consensus 868 ~~L~SgS-~D~tIrlW--di~~~~l~~l 892 (897)
+.|+.++ .||.+.|| |+.++....+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 9888765 68877666 6666644333
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.82 E-value=3.7e-05 Score=82.87 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=65.8
Q ss_pred cccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
...+|...+.+.++.+....+.||+.|..+.+||+. .....+.+|.+.|..+.+-+- .++|++.||.|-+||.+.
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 456777888888888888899999999999999987 667778899999999988764 999999999999999874
No 248
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.0001 Score=87.87 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=91.4
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEeCCcceeecc------CCCCcEEEEEEeCC--EEEEEecCCeEEEE
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDS------SENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~------gH~~~V~sV~fspd--~L~Sgs~DgtIrlW 838 (897)
+++..++. ...+...+.|.+... -.+..+.+|+..+..+... .|.-.++++++||+ ++++|..||.|.+|
T Consensus 155 d~~~~~~~-~~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 155 DFLKEHQE-PKSIVDNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred hhhhhhcC-CccEEEcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEE
Confidence 34444333 333444444443332 3466777888762112222 36667899999996 99999999999999
Q ss_pred eCCC--CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceeeecc
Q 002641 839 TGRG--SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIFIQV 895 (897)
Q Consensus 839 d~~~--~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l~~~ 895 (897)
.-.. +.....+.++-|...|.+++|+++|.+|+|||..|-+-+|.+.++..+-|+++
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL 291 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL 291 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc
Confidence 7654 32244677899999999999999999999999999999999999976666654
No 249
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.81 E-value=0.00025 Score=76.06 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=92.6
Q ss_pred CceeeeecccccccceeEeeecc------cccEEEEecCCCCeEEEeCC---cceeeccCCC--CcEEEEEEeCC--EEE
Q 002641 761 INIHMKDIMKGLRELRKYSPLAF------EMVKVLSNGHDSSADFWNHR---ELVHVDSSEN--GKVLSIACFRD--KIF 827 (897)
Q Consensus 761 ~~~~i~~~l~~~~~~~~~~~~s~------d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~--~~V~sV~fspd--~L~ 827 (897)
+...+||-++. +....+...++ ...+|+.. .+..|.||.+. +.++.+..-. ....+++-+-+ .|+
T Consensus 75 NkviIWDD~k~-~~i~el~f~~~I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 75 NKVIIWDDLKE-RCIIELSFNSEIKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ceEEEEecccC-cEEEEEEeccceeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 33788886555 33333322222 34445544 57899999987 4555554432 23444433333 444
Q ss_pred -EEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCc-EEEEeCCCc-cceeeecccC
Q 002641 828 -SGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKT-ARVRSNDSF-TYAIFIQVVD 897 (897)
Q Consensus 828 -Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~t-IrlWdi~~~-~l~~l~~~~d 897 (897)
-|-.-|.|+|-|+..........+..|...|.|++.+.+|..++|+|..|| |||||..+| .++.|++-+|
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD 225 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc
Confidence 455569999999987642235778899999999999999999999999986 789999999 8888887654
No 250
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.81 E-value=0.00082 Score=88.87 Aligned_cols=280 Identities=14% Similarity=0.146 Sum_probs=180.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcC----chHHHHHHHHhCCChhhHH-
Q 002641 314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLI- 388 (897)
Q Consensus 314 a~~~~ke~L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~----~~ea~~LL~~L~~~~~~i~- 388 (897)
++..+.+.|.+. +.++.+.+...+..+-..++..+..|.+. +.+..++.+|+++ .++|+..|..|.-...|+.
T Consensus 447 gIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 447 GVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 456666666654 34556677777766666666666666654 5799999999876 6788889999998666533
Q ss_pred ---HHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhh--------------cCCcccccccchh------------
Q 002641 389 ---EMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMI--------------GDSEESIVSSIAN------------ 439 (897)
Q Consensus 389 ---~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l--------------~~~d~~~~~~~~~------------ 439 (897)
..+.+|.|+++|++++.+ .-+.|+-+|...+- .+-| .....++-
T Consensus 525 iV~~aGAIppLV~LL~sgd~~------~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd-~~~~~~aL~vLgnIlsl~~~ 597 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPK------GQEIAAKTLTKLVRTADAATISQLTALLLGDL-PESKVHVLDVLGHVLSVASL 597 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHH------HHHHHHHHHHHHHhccchhHHHHHHHHhcCCC-hhHHHHHHHHHHHHHhhcch
Confidence 347899999999988654 12444444443321 1111 00001100
Q ss_pred ------hhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHH
Q 002641 440 ------TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE 513 (897)
Q Consensus 440 ------~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~e 513 (897)
-....||++.|++.+++|+.+.+..|+.+|...-.-..+-+..+.+...+.|++.+|..+++..+.++-..|.-
T Consensus 598 ~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 598 EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 01246899999999999999999999999976555555656779999999999999999988888888777777
Q ss_pred HHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHHHHhhhhhcCcccc-cccHHHHHHHHHHHhhcCC
Q 002641 514 LVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKM-SIYREEAIDTLISCLRNSD 592 (897)
Q Consensus 514 l~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~lllqld~l~~~~~~-s~~reea~~~~~~~l~~~~ 592 (897)
|....+.... ...+ +.|.+. .|...|.....+-.-.++.-| --++.++... .+-.+.++..|++-|+ +.
T Consensus 678 L~~~~~~~q~---~~~v-~~GaV~---pL~~LL~~~d~~v~e~Al~AL--anLl~~~e~~~ei~~~~~I~~Lv~lLr-~G 747 (2102)
T PLN03200 678 LSRSIKENRK---VSYA-AEDAIK---PLIKLAKSSSIEVAEQAVCAL--ANLLSDPEVAAEALAEDIILPLTRVLR-EG 747 (2102)
T ss_pred HHhCCCHHHH---HHHH-HcCCHH---HHHHHHhCCChHHHHHHHHHH--HHHHcCchHHHHHHhcCcHHHHHHHHH-hC
Confidence 7765543322 1223 344432 244444433222211111111 1233334322 2335778888888887 44
Q ss_pred chHHHHHHHHHHHhcccccc
Q 002641 593 YPAAQLAAAKTIVSLQGRFT 612 (897)
Q Consensus 593 ~~~~q~~~~~~l~~l~g~~s 612 (897)
.+++++.|+.||..|.-+|+
T Consensus 748 ~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred ChHHHHHHHHHHHHHHhCCC
Confidence 57889999999988776665
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0001 Score=80.74 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=91.4
Q ss_pred ccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641 785 MVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (897)
Q Consensus 785 ~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~ 859 (897)
...+|++..-+.+++||+. +++..+.--..+++++...|+ ++++|-.-|.+..+|++++. ...+.++|-++.|+
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k-l~g~~~kg~tGsir 294 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK-LLGCGLKGITGSIR 294 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce-eeccccCCccCCcc
Confidence 5679999999999999987 677777777889999999885 99999999999999999984 33455999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 860 GLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 860 slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
++..+|.+.+++|+|.|+.+||+|+.+.
T Consensus 295 sih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eEEEcCCCceEEeeccceeEEEeecccc
Confidence 9999999999999999999999999984
No 252
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.80 E-value=2.1e-05 Score=68.18 Aligned_cols=39 Identities=26% Similarity=0.762 Sum_probs=32.0
Q ss_pred ccccccCCCCc------------e-ecCCCcccchHHHHHHHhcCCCCCCCCC
Q 002641 166 CPITTHIFDDP------------V-TLETGQTYERRAIQEWIERGNSSCPITR 205 (897)
Q Consensus 166 CpIC~~l~~dP------------V-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr 205 (897)
|+||++-|.+| + ..+|||.|...||.+|+... .+||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-NTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-SB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-CcCCCCC
Confidence 99999999544 2 34899999999999999854 4999997
No 253
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.00032 Score=76.25 Aligned_cols=108 Identities=12% Similarity=0.163 Sum_probs=76.3
Q ss_pred cceeEeeeccc-ccEEEEecCCCCeEEEeCC------cc--------eee--ccCCCCcEEEEEEeCC--EEEEEec-CC
Q 002641 774 ELRKYSPLAFE-MVKVLSNGHDSSADFWNHR------EL--------VHV--DSSENGKVLSIACFRD--KIFSGHS-DG 833 (897)
Q Consensus 774 ~~~~~~~~s~d-~~~LaSgs~DgtIklWd~~------~~--------l~~--l~gH~~~V~sV~fspd--~L~Sgs~-Dg 833 (897)
..+.+..+-|. +.-++.|.. +-|.+|... .. ... ..|| ..|+++.|++| .++++|. |.
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 44555555554 455666654 567789865 11 111 1233 68999999998 7777775 58
Q ss_pred eEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 834 TIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 834 tIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
.|.+||..++...++. .--.+.++-+.|||||.+|+.++.|+..++|+..
T Consensus 219 si~iWdpdtg~~~pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred eEEEEcCCCCCccccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 8999999998533332 2234578899999999999999999999999643
No 254
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.00025 Score=82.70 Aligned_cols=118 Identities=10% Similarity=-0.022 Sum_probs=86.2
Q ss_pred ccccceeEeeecccccEEEEecC---CCCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCCe--EEEEeCC
Q 002641 771 GLRELRKYSPLAFEMVKVLSNGH---DSSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGT--IKVWTGR 841 (897)
Q Consensus 771 ~~~~~~~~~~~s~d~~~LaSgs~---DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dgt--IrlWd~~ 841 (897)
.+...+....+++||++|+..+. +..|.+||+. .....+..+.+.+.+..|+|| ++++.+.||. |.+||+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 33456667778899999888764 4689999987 444556667778889999997 4567777766 6677888
Q ss_pred CCcceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCcccee
Q 002641 842 GSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTYAI 891 (897)
Q Consensus 842 ~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l~~ 891 (897)
++. ...+..|........|+|||+.|+..+. ++ .|.+||+.++..+.
T Consensus 279 ~~~---~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 279 SGT---TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CCc---eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 774 4556667667788999999998887763 33 67888887774433
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00016 Score=82.88 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=97.2
Q ss_pred cccccEEEEecCCCCeEEEeCC--cceeecc--CCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccC
Q 002641 782 AFEMVKVLSNGHDSSADFWNHR--ELVHVDS--SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT 855 (897)
Q Consensus 782 s~d~~~LaSgs~DgtIklWd~~--~~l~~l~--gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~ 855 (897)
+.+...++-|...|.|.++++. +....+. +|.+.|.++.++.+ .|.|++.|+.+-+|+.+.. +.++.+++.+
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~~ 144 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWKEQK 144 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeeccCC
Confidence 3356678889999999999986 5555555 58999999999986 9999999999999999987 5889999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeeccc
Q 002641 856 KAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQVV 896 (897)
Q Consensus 856 ~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~~~ 896 (897)
..+.++..+|||..+++|| ++|++||+.++ .+.+|..+.
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~ 184 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHG 184 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCC
Confidence 9999999999999999998 69999999999 788888764
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.77 E-value=6e-05 Score=81.30 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=85.7
Q ss_pred EEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641 787 KVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s 860 (897)
+...|...|.|.+-.+. .++.++.+|.+.+.+++|.|. .++||+.|..|-+||+-... -....+.||.+.|..
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-GTAYELQGHNDKVQA 245 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-ceeeeeccchhhhhh
Confidence 55566667777665543 789999999999999999985 99999999999999998664 346788999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 861 LAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 861 lafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+...+.-+.++|++.||.|-+||++..
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEeccce
Confidence 998888899999999999999999754
No 257
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.76 E-value=0.00015 Score=85.73 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=79.9
Q ss_pred ecccccEEEEecCCCCeEEEeCCcc----ee----eccCCCCcEEEEEEeCC----EEEEEecCCeEEEEeCCCCc----
Q 002641 781 LAFEMVKVLSNGHDSSADFWNHREL----VH----VDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSI---- 844 (897)
Q Consensus 781 ~s~d~~~LaSgs~DgtIklWd~~~~----l~----~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlWd~~~~~---- 844 (897)
...+...++.|.++|.|-+||+... .. ....|..+|+.+.|-.+ -|+|+|.||.|..|+++.-.
T Consensus 251 ~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e 330 (555)
T KOG1587|consen 251 CPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVE 330 (555)
T ss_pred ccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchh
Confidence 3447889999999999999998721 11 22358899999999754 69999999999999877422
Q ss_pred -----------------------------------------------------c----eeEEEeeccCCCeEEEEEccCC
Q 002641 845 -----------------------------------------------------L----HLIQQIREHTKAVTGLAILQSG 867 (897)
Q Consensus 845 -----------------------------------------------------~----~~i~~l~gH~~~V~slafspdg 867 (897)
. +....+..|.+.|+++.++|-+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 331 GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY 410 (555)
T ss_pred hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc
Confidence 1 1123455678899999999988
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 002641 868 EMLYSGSLDKTARVRSND 885 (897)
Q Consensus 868 ~~L~SgS~D~tIrlWdi~ 885 (897)
..++..+.|.++|+|.-.
T Consensus 411 ~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 411 PKNFLSVGDWTVRIWSED 428 (555)
T ss_pred cceeeeeccceeEecccc
Confidence 666666669999999876
No 258
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=5.6e-05 Score=84.68 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=101.7
Q ss_pred eecccccccceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC----EEEEEecCCeEEEE
Q 002641 766 KDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVW 838 (897)
Q Consensus 766 ~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlW 838 (897)
..-+.+|.+.++.+.|...|..++|||.|..|.+||+. ..+.-..||...|+.-.|-|. .+++++.||.||+=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 34567788899999999999999999999999999986 455555689999999999883 89999999999998
Q ss_pred eCCCCc-ceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCc
Q 002641 839 TGRGSI-LHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 839 d~~~~~-~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+.... ..-...+..|.+.|.-++.-|+. ..|.|+|.|+.+.-.|++.+
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence 876432 11133456799999999999975 78999999999999999887
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00021 Score=82.05 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=95.9
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
.+|...++..-.+.+...|.|++.|+.+..|+.. +.+..+++.+..+.+++++|| +++++| +.|++||+.+.
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k-- 174 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK-- 174 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc--
Confidence 4566677777777778889999999999999987 788888899999999999999 888776 68999999998
Q ss_pred eeEEEeeccCCCeEEEEEccC-----CCEEEEE-eCCCcEEEEeCCC
Q 002641 846 HLIQQIREHTKAVTGLAILQS-----GEMLYSG-SLDKTARVRSNDS 886 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspd-----g~~L~Sg-S~D~tIrlWdi~~ 886 (897)
+.+.+|.||.+.|++++|-.+ |.++.++ ..+.-|.+|-+..
T Consensus 175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 589999999999999999776 6666655 5677788998765
No 260
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.8e-05 Score=80.54 Aligned_cols=77 Identities=31% Similarity=0.460 Sum_probs=71.6
Q ss_pred CCCCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCCCC
Q 002641 157 KHTPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPGG 234 (897)
Q Consensus 157 ~~~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~~~ 234 (897)
+.++|+.+.|.|..++|++||+++.|-||.|.-|.+++..-+..-|++|.++....++ ||..|+..|..|...+.+.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~i-pN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLI-PNLALKEVIAAFLKENEWA 281 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhc-cchHHHHHHHHHHHhcccc
Confidence 3489999999999999999999999999999999999997777899999999999996 9999999999999988764
No 261
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.00015 Score=86.43 Aligned_cols=117 Identities=13% Similarity=0.121 Sum_probs=95.5
Q ss_pred ecccccccceeEeeecccccEEEEecCCCCeEEEe-CC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEE
Q 002641 767 DIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWN-HR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVW 838 (897)
Q Consensus 767 ~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd-~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlW 838 (897)
++-..|.....+..+++.+.++|+|..||.|.+|. +. ...+.+.=|...|.+++|+++ +|+|||..|..-+|
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 33444555578899999999999999999999996 33 233445558899999999997 99999999999999
Q ss_pred eCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 839 TGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 839 d~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
...++. .+-+.--.+.|..+.||||++.......|.+|.+-...+
T Consensus 279 q~~T~~---kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 279 QLETGK---KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred eecCCC---cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 999984 233444567899999999999999999999999887644
No 262
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.67 E-value=0.00013 Score=89.34 Aligned_cols=87 Identities=25% Similarity=0.339 Sum_probs=73.4
Q ss_pred EeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc-----ceeEEEeeccCCCeEEEEEccCCCEE
Q 002641 800 WNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQSGEML 870 (897)
Q Consensus 800 Wd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~-----~~~i~~l~gH~~~V~slafspdg~~L 870 (897)
|+.+ ..+..+..|...|..++.+++ +|+|||.|||||+||.+.-. .+...++..-++.|.++.+.+.|+.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 7776 788888899999999998864 99999999999999998432 23445555567789999999999999
Q ss_pred EEEeCCCcEEEEeCCC
Q 002641 871 YSGSLDKTARVRSNDS 886 (897)
Q Consensus 871 ~SgS~D~tIrlWdi~~ 886 (897)
+.|+.||.|++.++.-
T Consensus 1114 Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred EEEcCCCeEEEEEccc
Confidence 9999999999999876
No 263
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.67 E-value=8.1e-05 Score=82.98 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=81.3
Q ss_pred ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeE
Q 002641 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLI 848 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i 848 (897)
.+...+...+|....+-.|...|+|.+|... +.+..+..|.++|.+|++.++ +.+|.|.|..++|||+++-. .+
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql 328 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QL 328 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc--cc
Confidence 3445556666777788899999999999987 777788899999999999996 99999999999999999863 23
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
.++.. .-....++||..| ++..|....+.+|.
T Consensus 329 ~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 329 HTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 33332 2345678888555 44455556789994
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00028 Score=74.90 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=61.0
Q ss_pred cccccccceeEeeecc-cccEEEEecCCCCeEEEeCC---cceee-ccCCCCcEEEEEEeCC---EEEEEecCCeEEEEe
Q 002641 768 IMKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR---ELVHV-DSSENGKVLSIACFRD---KIFSGHSDGTIKVWT 839 (897)
Q Consensus 768 ~l~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~---~~l~~-l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd 839 (897)
..+.|.-..+...++. +.+.+.+||.|+.+.-||++ +.+.. -+-|+..|.|+.-+|. .++||+.|..|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 5666776666666654 56789999999999999988 33333 4568999999999874 999999999999999
Q ss_pred CCC
Q 002641 840 GRG 842 (897)
Q Consensus 840 ~~~ 842 (897)
.++
T Consensus 240 tRn 242 (339)
T KOG0280|consen 240 TRN 242 (339)
T ss_pred hhc
Confidence 994
No 265
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.62 E-value=4.4e-05 Score=87.25 Aligned_cols=69 Identities=22% Similarity=0.477 Sum_probs=56.3
Q ss_pred CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHH
Q 002641 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQ 228 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~ 228 (897)
.+.+++.||+|..++.||+.+ .|||.||+.|+..|... ...||.|+..+.....+.....+++.+.++.
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 577889999999999999995 99999999999999986 6789999988776665323455666666554
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.00028 Score=80.54 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=85.5
Q ss_pred ccceeEeeecccccEEEEecCCCCeEEEeCC--cce------eeccCCCC-----cEEEEEEeCC--EEEEEecCCeEEE
Q 002641 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELV------HVDSSENG-----KVLSIACFRD--KIFSGHSDGTIKV 837 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l------~~l~gH~~-----~V~sV~fspd--~L~Sgs~DgtIrl 837 (897)
...++++.+++.-.+|+.|+.||.|..||.+ ... .....|.+ .|+++.|+.| .++.|..+|.|.+
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI 254 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence 3677888888888899999999999999986 211 22223433 4999999986 8999999999999
Q ss_pred EeCCCCcceeEEEeeccCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCc
Q 002641 838 WTGRGSILHLIQQIREHTKAVTGLAILQS--GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 838 Wd~~~~~~~~i~~l~gH~~~V~slafspd--g~~L~SgS~D~tIrlWdi~~~ 887 (897)
||+++.. ..+..-++..-+|..+.|.+. ++.++|.. ...++|||-.+|
T Consensus 255 yDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~G 304 (703)
T KOG2321|consen 255 YDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTG 304 (703)
T ss_pred EEcccCC-ceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccC
Confidence 9999885 333333444557899999776 35555543 468999999888
No 267
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=3.5e-05 Score=81.74 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=43.9
Q ss_pred ccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641 164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (897)
Q Consensus 164 l~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~ 214 (897)
-.|+||..-+.-||.++|+|-||.-||......+..+||+||.+++..-+.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 359999999999999999999999999985544566899999999876653
No 268
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.55 E-value=0.00081 Score=78.42 Aligned_cols=113 Identities=13% Similarity=-0.025 Sum_probs=79.4
Q ss_pred ccceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCC--eEEEEeCCCC
Q 002641 773 RELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDG--TIKVWTGRGS 843 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg--tIrlWd~~~~ 843 (897)
...+....+++||++|+..+.+ ..|.+||+. .....+..+.+...++.|+|| ++++.+.+| .|.+||+.++
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 3445556778899999887754 368999986 333344455556668899997 445666665 5999999887
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CCc--EEEEeCCCcc
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKT--ARVRSNDSFT 888 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~t--IrlWdi~~~~ 888 (897)
. ...+..|.......+|+|||+.|+.++. ++. |.++|+.++.
T Consensus 283 ~---~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 283 Q---LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred C---eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4 4456666666678999999998887774 454 6666776663
No 269
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00042 Score=76.08 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=91.1
Q ss_pred EeeecccccEEEEecCC--CCeEEEeCCcceeeccCCC-----------CcEEEEEEeCC----EEEEEecCCeEEEEeC
Q 002641 778 YSPLAFEMVKVLSNGHD--SSADFWNHRELVHVDSSEN-----------GKVLSIACFRD----KIFSGHSDGTIKVWTG 840 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~D--gtIklWd~~~~l~~l~gH~-----------~~V~sV~fspd----~L~Sgs~DgtIrlWd~ 840 (897)
+-.+..+...+++||.. ..+++||+.+..+++.+.+ -+++++.|-++ .|++|..-+.+|+||.
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt 233 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDT 233 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecC
Confidence 33344456678889999 8999999986667776632 24557777653 9999999999999999
Q ss_pred CCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 841 RGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 841 ~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+.+. +++..|.--..+++++...|+|+.+++|-.-+.+..+|++++
T Consensus 234 ~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 234 RHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred cccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 9876 788888888889999999999999999999999999999998
No 270
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.54 E-value=4e-05 Score=76.13 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=45.2
Q ss_pred cccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHH
Q 002641 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLI 224 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li 224 (897)
.|.|-||..-++.||++.|||.||..|..+-... ...|-+|++......- ....+..++
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~G~f~--V~~d~~kmL 254 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATYGRFW--VVSDLQKML 254 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhcccee--HHhhHHHHH
Confidence 4999999999999999999999999998875553 4589999987654432 333444443
No 271
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.00036 Score=75.93 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=77.8
Q ss_pred cccEEEEecCCCCeEEEeCC-cceeeccCC-CCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCc--ce--------e-
Q 002641 784 EMVKVLSNGHDSSADFWNHR-ELVHVDSSE-NGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSI--LH--------L- 847 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~-~~l~~l~gH-~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~--~~--------~- 847 (897)
....++++..|-+|++||-. +....++.- ...|+|++|-|. .|+.|.. +-|.+|...... .+ .
T Consensus 109 H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~ 187 (445)
T KOG2139|consen 109 HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHL 187 (445)
T ss_pred hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccch
Confidence 44567889999999999976 444455543 678999999995 5666555 457899876321 01 1
Q ss_pred -EEEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCccceee
Q 002641 848 -IQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVRSNDSFTYAIF 892 (897)
Q Consensus 848 -i~~l~gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~~~~l~~l 892 (897)
+....|| ..|++++|.+||..++++|. |..|+|||..+|....+
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence 2223455 68999999999999999995 67999999999844443
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00012 Score=82.58 Aligned_cols=119 Identities=12% Similarity=0.139 Sum_probs=84.7
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC---------cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEe
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---------ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWT 839 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---------~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd 839 (897)
..||+..++...--.+.+-++|+|.|++|++|.++ -+..+++.|+.+|.++.|-.+.=...|.||.|.+||
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD 810 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD 810 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence 44555444444333456678999999999999975 267788899999999988877433445678888888
Q ss_pred CCCCc---------------------------------------------ceeEEEe-----eccCCCeEEEEEccCCCE
Q 002641 840 GRGSI---------------------------------------------LHLIQQI-----REHTKAVTGLAILQSGEM 869 (897)
Q Consensus 840 ~~~~~---------------------------------------------~~~i~~l-----~gH~~~V~slafspdg~~ 869 (897)
.--+. ......+ .+.+..+.++++.+.|++
T Consensus 811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~ 890 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK 890 (1034)
T ss_pred ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch
Confidence 54332 0111111 234456788999999999
Q ss_pred EEEEeCCCcEEEEeCCCc
Q 002641 870 LYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 870 L~SgS~D~tIrlWdi~~~ 887 (897)
++.|-..|+|-+.|.++|
T Consensus 891 lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 891 LAAALSNGCIAILDARNG 908 (1034)
T ss_pred hhHHhcCCcEEEEecCCC
Confidence 999999999999999998
No 273
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.48 E-value=0.0015 Score=76.24 Aligned_cols=114 Identities=13% Similarity=-0.056 Sum_probs=75.6
Q ss_pred ccceeEeeecccccEEEEecC---CCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEE-EEecCC--eEEEEeCCCC
Q 002641 773 RELRKYSPLAFEMVKVLSNGH---DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIF-SGHSDG--TIKVWTGRGS 843 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~---DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~-Sgs~Dg--tIrlWd~~~~ 843 (897)
........++|||++|+..+. +..+.+||+. .....+....+.+..+.|+|| .|+ +.+.+| .|.+||+.++
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 345667788899999886543 3568899986 222333333344557899998 444 445555 5889999887
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeCC-CcEEEE--eCCCccc
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-KTARVR--SNDSFTY 889 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D-~tIrlW--di~~~~l 889 (897)
. ...+..+...+....|+|||+.|+..+.+ +..++| |+.++..
T Consensus 278 ~---~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 278 Q---IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred C---EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 4 33444455567889999999988877754 455555 6666633
No 274
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.0011 Score=77.11 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=76.4
Q ss_pred eeEeeecccccEEE-EecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC--EEEEEe-cCCeEEEEeCC--CCcce
Q 002641 776 RKYSPLAFEMVKVL-SNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGR--GSILH 846 (897)
Q Consensus 776 ~~~~~~s~d~~~La-Sgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd--~L~Sgs-~DgtIrlWd~~--~~~~~ 846 (897)
.....+++||+.|+ +.+.|+...||.++ .....+..|.+.+.+..|+|| .++..+ .+|...+|.+. ++.
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-- 319 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-- 319 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--
Confidence 34566788998876 57788888888654 445666667666778899997 555444 45777777654 442
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCcccee
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVRSNDSFTYAI 891 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D~---tIrlWdi~~~~l~~ 891 (897)
...+..+.......+|+|||++|+..+.++ .|.+||+.++....
T Consensus 320 -~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 320 -AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred -eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 222222233445688999999998777554 69999998874333
No 275
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.44 E-value=0.0011 Score=73.99 Aligned_cols=109 Identities=8% Similarity=0.022 Sum_probs=75.7
Q ss_pred eeEeeecccccEEEEecC-CCCeEEEeCC--c----ceeeccCCCCcEEEEEEeCC--EE-EEEecCCeEEEEeCCCCcc
Q 002641 776 RKYSPLAFEMVKVLSNGH-DSSADFWNHR--E----LVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~-DgtIklWd~~--~----~l~~l~gH~~~V~sV~fspd--~L-~Sgs~DgtIrlWd~~~~~~ 845 (897)
...+.++++++++++++. ++.|.+|++. . .+..+. +.....+++|+|+ ++ ++...+++|.+||+.+..
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g- 159 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG- 159 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC-
Confidence 356677889998887765 7899999985 1 222222 3345678899997 44 566677999999997631
Q ss_pred eeE----EEee-ccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCC
Q 002641 846 HLI----QQIR-EHTKAVTGLAILQSGEMLYSGSL-DKTARVRSNDS 886 (897)
Q Consensus 846 ~~i----~~l~-gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~~ 886 (897)
.+. .... ........++|+|+|++++++.. +++|.+||+..
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 111 0111 11234678999999999988875 89999999973
No 276
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6.9e-05 Score=79.41 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=41.2
Q ss_pred cccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCC
Q 002641 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~ 211 (897)
-|.|-||...|.+||++.|||+||..|-...+.. ...|++|.+.....
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHGS 288 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccccc
Confidence 3789999999999999999999999998877664 35899999886543
No 277
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.42 E-value=0.0018 Score=75.55 Aligned_cols=112 Identities=8% Similarity=-0.007 Sum_probs=75.1
Q ss_pred EeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEe-cCCe--EEEEeCCCCcceeE
Q 002641 778 YSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGH-SDGT--IKVWTGRGSILHLI 848 (897)
Q Consensus 778 ~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs-~Dgt--IrlWd~~~~~~~~i 848 (897)
...+++||++++ +.+.++ .|.+||+. .....+..|.+....++|+|| .++.++ .+|. |.++|+.++. .
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~ 328 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---A 328 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---e
Confidence 456788998775 455555 58888987 445566677666778999997 565555 4555 5566666663 2
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCccceee
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVRSNDSFTYAIF 892 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~---tIrlWdi~~~~l~~l 892 (897)
..+..+.......+|+|||++|+..+.++ .|.+||+.++....+
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL 375 (433)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence 22222334455789999999988765433 699999988744443
No 278
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.41 E-value=0.0018 Score=72.48 Aligned_cols=110 Identities=10% Similarity=0.151 Sum_probs=74.1
Q ss_pred eEeeecccccEEE-EecCCCCeEEEeCCc--cee-----eccC-CCCcEEEEEEeCC--EEEEEec-CCeEEEEeCCC--
Q 002641 777 KYSPLAFEMVKVL-SNGHDSSADFWNHRE--LVH-----VDSS-ENGKVLSIACFRD--KIFSGHS-DGTIKVWTGRG-- 842 (897)
Q Consensus 777 ~~~~~s~d~~~La-Sgs~DgtIklWd~~~--~l~-----~l~g-H~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~~-- 842 (897)
....+++++++++ +...+++|.+||+.. .+. .... .......+.|+|| +++++.. +++|.+||+..
T Consensus 129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~ 208 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH 208 (330)
T ss_pred cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 3445678888774 555679999999862 111 1111 1234578999998 6666655 89999999973
Q ss_pred CcceeEEEeecc------CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC
Q 002641 843 SILHLIQQIREH------TKAVTGLAILQSGEMLYSGS-LDKTARVRSNDS 886 (897)
Q Consensus 843 ~~~~~i~~l~gH------~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~ 886 (897)
+....++.+..+ ......+.|+|+|++++++. .+++|.+|++..
T Consensus 209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 333444444322 12344688999999999885 478999999864
No 279
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.38 E-value=0.002 Score=74.38 Aligned_cols=113 Identities=14% Similarity=-0.050 Sum_probs=78.6
Q ss_pred cceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCC--eEEEEeCCCCc
Q 002641 774 ELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDG--TIKVWTGRGSI 844 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg--tIrlWd~~~~~ 844 (897)
..+....++++|++++.++.+ ..|.+||+. .....+..+.+.+.++.|+|| ++++.+.++ .|.+||+.++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 344555688999998877654 479999987 334445556677788999997 445555554 58889988763
Q ss_pred ceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCccc
Q 002641 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTY 889 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l 889 (897)
...+..|...+....|+|||+.|+..+. ++ .|.+||+.++..
T Consensus 270 ---~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 270 ---LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred ---EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3445555555667899999998877664 33 577788877643
No 280
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.0029 Score=73.74 Aligned_cols=112 Identities=9% Similarity=0.045 Sum_probs=75.9
Q ss_pred EeeecccccEEEEe-cCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEE--eCCCCcceeE
Q 002641 778 YSPLAFEMVKVLSN-GHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVW--TGRGSILHLI 848 (897)
Q Consensus 778 ~~~~s~d~~~LaSg-s~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlW--d~~~~~~~~i 848 (897)
...++|||++|+.. +.++ .|.+||+. .....+..+...+....|+|| .|+..+. +|..++| |+.++. .
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~ 323 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---P 323 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---e
Confidence 45678899988754 4455 48888987 444555556667889999997 5655554 4555666 555553 3
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCccceee
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVRSNDSFTYAIF 892 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D---~tIrlWdi~~~~l~~l 892 (897)
..+..+...+.+..|+|||++|+..+.+ ..|.+||+.++....+
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe
Confidence 3444445556788999999998876643 3588899988854444
No 281
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.00049 Score=74.52 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=82.3
Q ss_pred cccccEEEEecCCCCeEEEeCC-c------ceeeccCCCCcEEEEEE---eCCEEEEEecCCeEEEEeCCCCc-ceeEEE
Q 002641 782 AFEMVKVLSNGHDSSADFWNHR-E------LVHVDSSENGKVLSIAC---FRDKIFSGHSDGTIKVWTGRGSI-LHLIQQ 850 (897)
Q Consensus 782 s~d~~~LaSgs~DgtIklWd~~-~------~l~~l~gH~~~V~sV~f---spd~L~Sgs~DgtIrlWd~~~~~-~~~i~~ 850 (897)
...+..+..|...|.|-..|++ + ..+. --|.+.|+|+.. +...|.+.+.+|+|++||.+.-+ ..-+.+
T Consensus 261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~q 339 (425)
T KOG2695|consen 261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQ 339 (425)
T ss_pred cccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceee
Confidence 3357789999999999999987 2 1111 247888888864 33488889999999999999642 123899
Q ss_pred eeccCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 851 IREHTKAVTGLAI--LQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 851 l~gH~~~V~slaf--spdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
+.||.+.-..+-+ .+....+++++.|.-.|||.++.| .+.++
T Consensus 340 YeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 340 YEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred eecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 9999775544443 345578899999999999999998 55443
No 282
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.34 E-value=0.0021 Score=75.00 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=70.8
Q ss_pred CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec---CCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCC
Q 002641 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE 868 (897)
Q Consensus 795 gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~---DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~ 868 (897)
..|.+||.+ ...+.+..|...+.+..|+|| .|+..+. +..|.+||+.++. ...+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---EEEeecCCCcccCcEECCCCC
Confidence 467788877 555677788899999999998 6666553 4789999999874 344555666778899999998
Q ss_pred EEE-EEeCCCc--EEEEeCCCccceee
Q 002641 869 MLY-SGSLDKT--ARVRSNDSFTYAIF 892 (897)
Q Consensus 869 ~L~-SgS~D~t--IrlWdi~~~~l~~l 892 (897)
.|+ +.+.|+. |.+||+.++....+
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~L 285 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRL 285 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEc
Confidence 765 6666665 66778888744444
No 283
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.34 E-value=0.0018 Score=75.43 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=76.3
Q ss_pred ccceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EE-EEEecCCeEEEEeCC--CC
Q 002641 773 RELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KI-FSGHSDGTIKVWTGR--GS 843 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L-~Sgs~DgtIrlWd~~--~~ 843 (897)
...+....++|||++|+..+.+ ..|.+||+. .....+....+.+.+..|+|| .| ++.+.||..++|.+. ++
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS 274 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3445566788999998877654 358999987 333344444566678999997 44 567888887777654 43
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DKTARVRSND 885 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~tIrlWdi~ 885 (897)
....+..|...+....|+|||+.|+..+. ++...+|.+.
T Consensus 275 ---~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 275 ---GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred ---CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 24556666666778899999998887664 5677777653
No 284
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.32 E-value=0.00019 Score=75.09 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=64.2
Q ss_pred CcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 814 GKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 814 ~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
..|.+++-+|. +++.|+.||.+-+||.+... .+...++.|++.++-+.|+|. +..|+++|.||.+..||..+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCc
Confidence 34999999984 88899999999999999873 566778999999999999995 799999999999999998754
No 285
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.25 E-value=0.00098 Score=77.18 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 811 SENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 811 gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
...+.|.|.+++|+ .++.|..||+|.+||...+ +..+..+.-.++.++|+|+|..++.|+.-|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46789999999996 9999999999999999887 3334444556789999999999999999999999999765
No 286
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.0021 Score=70.35 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=90.9
Q ss_pred cccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCC--CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc-
Q 002641 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSE--NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI- 844 (897)
Q Consensus 772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH--~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~- 844 (897)
|+..+.+..|.....++.||+.+++|.+.|+. +.+.++... .+.|+.+..+|. .|++.+.||.|.+||.+...
T Consensus 104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 44566677788888999999999999999987 556555432 468999999993 99999999999999999653
Q ss_pred ceeEEEeeccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 845 LHLIQQIREHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
.-....+....+..+++.|+|- ..+|++.+..+-+.+||++..
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 1112223345567889999996 478889998899999999865
No 287
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0003 Score=73.88 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=41.4
Q ss_pred CCCcccccccccCCCCceec-CCCcccchHHHHHHHhc-CCCCCCCCCcccC
Q 002641 160 PPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIER-GNSSCPITRQKLS 209 (897)
Q Consensus 160 l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~-~~~~CP~Cr~~~~ 209 (897)
-..+..||+|++.-.-|.++ +|||.||..||..-... ..++||.|+....
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 44577899999999999988 69999999999885542 3578999998754
No 288
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.20 E-value=0.00024 Score=89.87 Aligned_cols=87 Identities=18% Similarity=0.345 Sum_probs=70.8
Q ss_pred CCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEcc
Q 002641 793 HDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ 865 (897)
Q Consensus 793 ~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafsp 865 (897)
.++.+.+||.- -+++ +.|.+.+++++|-|. .|+|||.+|.|++||++.. +.++.++. +.
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr--ql~h~~~~---------~~- 2378 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR--QLRHTFQA---------LD- 2378 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH--HHHHHhhh---------hh-
Confidence 56899999964 3444 789999999999997 9999999999999999987 34444443 44
Q ss_pred CCCEEEEEeCCCcEEEEeCCCc-cceeee
Q 002641 866 SGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 866 dg~~L~SgS~D~tIrlWdi~~~-~l~~l~ 893 (897)
.-.+|++|+..|.|+||++..- .+.+|+
T Consensus 2379 ~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2379 TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hhheeeccCcccceEEEEccccchhhcCc
Confidence 5678999999999999999875 655554
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.19 E-value=0.00075 Score=70.68 Aligned_cols=107 Identities=12% Similarity=0.291 Sum_probs=75.8
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCccee-
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL- 847 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~- 847 (897)
......|+...+.++.|+.||.+-+||.+ -....+..|+.+++-|-|+|. .|++++.||.+--||..+.-+.+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~ 261 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSIS 261 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEec
Confidence 33444555567789999999999999998 566778899999999999973 99999999999999988431000
Q ss_pred --------------E-------EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 848 --------------I-------QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 848 --------------i-------~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
+ ..+..-...|+++.+ -|..|++|+.-+-|.+.+
T Consensus 262 ~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 262 NQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CccccccccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 0 001111223444333 377888888777777664
No 290
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.18 E-value=0.0046 Score=70.60 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=75.4
Q ss_pred EEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEE
Q 002641 788 VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (897)
Q Consensus 788 LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slaf 863 (897)
+++-..+++|.+.|.. +.+..+......-..+.|+|| +++..+.||.|.+||+.+. +.+.+++.-. ...++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~ 85 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAV 85 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEE
Confidence 4567778999999986 677777765444455788996 7888899999999999998 4677776543 4678999
Q ss_pred ccCCCEEEEEe-CCCcEEEEeCCCc-cceee
Q 002641 864 LQSGEMLYSGS-LDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 864 spdg~~L~SgS-~D~tIrlWdi~~~-~l~~l 892 (897)
++||++++.+. .++++.++|.++. .++++
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeec
Confidence 99999999886 6899999999887 44443
No 291
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.17 E-value=0.0012 Score=71.20 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=82.3
Q ss_pred eEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l 851 (897)
.+..++++|+++||.+.- .+-|-|.. +..+.+. .-..|..+.|..| +|...+.|+.|.+|++... .-...+
T Consensus 12 ~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckI 87 (447)
T KOG4497|consen 12 PFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKI 87 (447)
T ss_pred CceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEe
Confidence 377899999999999866 55567765 3333322 2356777888887 6666788999999999887 356677
Q ss_pred eccCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCc
Q 002641 852 REHTKAVTGLAILQSGE-MLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 852 ~gH~~~V~slafspdg~-~L~SgS~D~tIrlWdi~~~ 887 (897)
..-...+.++.|||||+ .|.+...|-.|.+|.+.+.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 77788899999999995 5556668999999999875
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.17 E-value=0.0056 Score=64.58 Aligned_cols=112 Identities=10% Similarity=0.065 Sum_probs=83.8
Q ss_pred eeEeeecccccEEEEecCCCCeEEEeCC----cceee-ccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc---
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHV-DSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL--- 845 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~-l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~--- 845 (897)
.+...+++|+++.++.+....|-.|.++ ..+.+ ...-...=++..|+.+ .+|+++.||++.|||++....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 5667788999999999999999999886 23332 2233455678899874 999999999999999996420
Q ss_pred eeEEEeeccCCCeEEEEEccCC--CEEEEEeCCCcEEEEeCCCc
Q 002641 846 HLIQQIREHTKAVTGLAILQSG--EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg--~~L~SgS~D~tIrlWdi~~~ 887 (897)
....+-..|+++|..+.|+|-| ..|+-.-.=+.+.+.|++++
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 1112223489999999999876 45555555678999999998
No 293
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.17 E-value=0.001 Score=46.92 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.7
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
.++..+.+|...|+++.|+++++.+++|+.|+++++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677888999999999999999999999999999997
No 294
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.16 E-value=0.0058 Score=70.47 Aligned_cols=111 Identities=11% Similarity=0.006 Sum_probs=77.5
Q ss_pred eEeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec-CC--eEEEEeCCCCccee
Q 002641 777 KYSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS-DG--TIKVWTGRGSILHL 847 (897)
Q Consensus 777 ~~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-Dg--tIrlWd~~~~~~~~ 847 (897)
....++++|+.|+ +.+.++ .|.+||+. .....+..|.+......|+|| .|+.++. ++ .|.+||+.++.
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--- 313 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--- 313 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence 3456788888765 455554 57888886 445556666666667889997 5555443 34 57777887763
Q ss_pred EEEeeccCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCccce
Q 002641 848 IQQIREHTKAVTGLAILQSGEMLYSGSLDK---TARVRSNDSFTYA 890 (897)
Q Consensus 848 i~~l~gH~~~V~slafspdg~~L~SgS~D~---tIrlWdi~~~~l~ 890 (897)
...+..+...+....|+|+|++++.++.++ .|.+||+.++..+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 344555666778899999999999988776 7889999887433
No 295
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.14 E-value=0.00039 Score=61.13 Aligned_cols=35 Identities=20% Similarity=0.590 Sum_probs=29.2
Q ss_pred ceec-CCCcccchHHHHHHHhcC--CCCCCCCCcccCC
Q 002641 176 PVTL-ETGQTYERRAIQEWIERG--NSSCPITRQKLSS 210 (897)
Q Consensus 176 PV~l-~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~~ 210 (897)
|++. .|||.|-..||.+|++.. +..||.||++...
T Consensus 46 plv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 46 PLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred ceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 6555 899999999999999953 5689999998653
No 296
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.13 E-value=0.0061 Score=70.91 Aligned_cols=113 Identities=16% Similarity=0.001 Sum_probs=76.3
Q ss_pred ccceeEeeecccccEEEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EE-EEEecCC--eEEEEeCCCC
Q 002641 773 RELRKYSPLAFEMVKVLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KI-FSGHSDG--TIKVWTGRGS 843 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L-~Sgs~Dg--tIrlWd~~~~ 843 (897)
........+++||++|+..+.+ ..|.+||+. .....+....+.+....|+|| .| ++.+.+| .|.+||+.++
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3444556788999998776644 357888886 333334444455667899997 44 4555555 5888899887
Q ss_pred cceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCcc
Q 002641 844 ILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFT 888 (897)
Q Consensus 844 ~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~ 888 (897)
. ...+..+...+....|+|||+.|+..+. ++ .|.+||+.++.
T Consensus 278 ~---~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 278 Q---LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred C---eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 4 3445556666778899999988776653 33 57777887774
No 297
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00019 Score=85.86 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=42.1
Q ss_pred CCcccccccccCCCC-----ceecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 161 PKDFVCPITTHIFDD-----PVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 161 ~~el~CpIC~~l~~d-----PV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
..+-.|+||.+.|.. |-.++|||.|+..|+..|++. ..+||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 347789999999999 788999999999999999997 558999999543
No 298
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.12 E-value=0.00076 Score=85.55 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=93.7
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCCEEEEEe---cCCeEEEEeCCCC-cceeE
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRDKIFSGH---SDGTIKVWTGRGS-ILHLI 848 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd~L~Sgs---~DgtIrlWd~~~~-~~~~i 848 (897)
..+.-..++..|+.+..+..||.+.+|... +.....+.|+.....+.|-...+++.+ .++.+.+||.... ...++
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee
Confidence 334445566688899999999999999998 777778889988888888777666654 4688999998743 22344
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
. +.|-+.++++++.|....|+|||.+|.|++||++.. .+.+|
T Consensus 2332 ~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2332 H--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred e--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 4 889999999999999999999999999999999987 44443
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.12 E-value=0.0017 Score=71.74 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=64.6
Q ss_pred ccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeecc-CCCCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCc
Q 002641 769 MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDS-SENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~-gH~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~ 844 (897)
.-||-....-+.+++|+.+|+++..|..||+-.+. -.+..|. ||+..|..++.-++ .|+|||.|+++++||+.+++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 34666777778889999999999999999987766 4444444 79999999999998 78999999999999999985
No 300
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.0029 Score=72.57 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=75.3
Q ss_pred EEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc----ceeEEEeeccCC----
Q 002641 789 LSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI----LHLIQQIREHTK---- 856 (897)
Q Consensus 789 aSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~----~~~i~~l~gH~~---- 856 (897)
..++....|.=.++. ..+..|....+.+++|..++- +|+.|+.||+|-.||.++.. +........|.+
T Consensus 149 y~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~ 228 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA 228 (703)
T ss_pred EEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccccc
Confidence 333334445555665 788888888899999999984 88888889999999999753 111112222333
Q ss_pred -CeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 857 -AVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 857 -~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.|++++|+-+|-.++.|+.+|.+.|||+++.
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 4999999988999999999999999999986
No 301
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.99 E-value=0.008 Score=70.50 Aligned_cols=112 Identities=13% Similarity=-0.083 Sum_probs=72.8
Q ss_pred ceeEeeecccccEEEEecCC-C--CeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCCe--EEEEeCCCCcc
Q 002641 775 LRKYSPLAFEMVKVLSNGHD-S--SADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDGT--IKVWTGRGSIL 845 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~D-g--tIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dgt--IrlWd~~~~~~ 845 (897)
......++|||++|+..+.+ + .|.+||+. .....+....+......|+|| ++++.+.+|. |.+||+.++.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~- 297 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA- 297 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-
Confidence 44456778999988876543 3 47777875 222223322334457899997 4455666775 7777887764
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCccc
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTY 889 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l 889 (897)
...+..|...+...+|+|||+.|+..+. ++ .|.++|+.++..
T Consensus 298 --~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 298 --LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred --eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 4455556666778999999988776653 44 466667777743
No 302
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00042 Score=76.53 Aligned_cols=47 Identities=15% Similarity=0.527 Sum_probs=40.3
Q ss_pred ccccccccCCCCc--e-ecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641 164 FVCPITTHIFDDP--V-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (897)
Q Consensus 164 l~CpIC~~l~~dP--V-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~ 210 (897)
..|.||++-|.+- + ++||+|.|-..||..|+.+....||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 6999999999853 3 469999999999999999876779999987643
No 303
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.93 E-value=0.043 Score=67.03 Aligned_cols=268 Identities=18% Similarity=0.234 Sum_probs=162.6
Q ss_pred ChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCchH----HHHHHHHhCCChhhHH---HHhhHHHHHHH
Q 002641 327 DPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPSTRTLI---EMDMMESLMTV 399 (897)
Q Consensus 327 ~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~~e----a~~LL~~L~~~~~~i~---~~~~~~~Ll~~ 399 (897)
..|+++.+..+|..+ +.+..+...+.+ .+-+.-++.+|+++..+ +..+|..|+-...|.. +.+.+|.|+..
T Consensus 262 QeqLlrv~~~lLlNL-Aed~~ve~kM~~-~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNL-AEDPRVELKMVN-KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHHH-hcChHHHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 345688888888777 444455555554 45566788888887333 3448889997766654 55678889999
Q ss_pred HHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcc
Q 002641 400 IKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKC 479 (897)
Q Consensus 400 l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~c 479 (897)
+.++.+++.. .|+-+|.-+ +| +..++.+||+.|.+|.|+..++.++..+- +. =+|-.+..|..|
T Consensus 340 l~s~~~~l~~-------~aLrlL~NL--Sf----d~~~R~~mV~~GlIPkLv~LL~d~~~~~v--al-~iLy~LS~dd~~ 403 (708)
T PF05804_consen 340 LPSENEDLVN-------VALRLLFNL--SF----DPELRSQMVSLGLIPKLVELLKDPNFREV--AL-KILYNLSMDDEA 403 (708)
T ss_pred hcCCCHHHHH-------HHHHHHHHh--Cc----CHHHHHHHHHCCCcHHHHHHhCCCchHHH--HH-HHHHHhccCHhh
Confidence 9887665322 223333222 33 34589999999999999999997765432 32 346667778899
Q ss_pred hhhHhhhcchhhHHHHHhhc-CcchhHHHHHHHHHHHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHH
Q 002641 480 RNSIADKAELAPVMESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVA 558 (897)
Q Consensus 480 r~~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a 558 (897)
|+.++....+..++++|-.+ +.....+.++++.-|..-.|-+ +.+-++|++ +.|+....+.. -|+..
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna------qlm~~g~gL---~~L~~ra~~~~---D~lLl 471 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA------QLMCEGNGL---QSLMKRALKTR---DPLLL 471 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH------HHHHhcCcH---HHHHHHHHhcc---cHHHH
Confidence 99999999999999976664 4444566677777777766643 334444443 23333332211 22222
Q ss_pred HHHHhhhhhcCcccccccHHHHHHHHHHHhhcCCchHHHHHHHHHHHhcccccccCCchhhHHHhHhhcCCCcc
Q 002641 559 GLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGKS 632 (897)
Q Consensus 559 ~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~~s~sg~~~~~~~llk~ag~~~~ 632 (897)
.++==+-.=..|.|. --.+.|.-|+..+.+.+.......+--+|.||.- ++ +.-+-+++..+|-+-
T Consensus 472 KlIRNiS~h~~~~k~--~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~----~~--ld~~~ll~~~~llp~ 537 (708)
T PF05804_consen 472 KLIRNISQHDGPLKE--LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI----PD--LDWAQLLQEYNLLPW 537 (708)
T ss_pred HHHHHHHhcCchHHH--HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc----CC--cCHHHHHHhCCHHHH
Confidence 211111000112221 2356788888888877766666666666666542 22 233445666565554
No 304
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00062 Score=73.92 Aligned_cols=47 Identities=28% Similarity=0.616 Sum_probs=39.8
Q ss_pred CCcccccccccCCCC-------------ceecCCCcccchHHHHHHHhcCCCCCCCCCccc
Q 002641 161 PKDFVCPITTHIFDD-------------PVTLETGQTYERRAIQEWIERGNSSCPITRQKL 208 (897)
Q Consensus 161 ~~el~CpIC~~l~~d-------------PV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~ 208 (897)
.++-.|.||++-|.. |-.++|||.+--.|+..|+++. .+||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCcc
Confidence 457789999998543 3678999999999999999964 4999999985
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.91 E-value=0.0019 Score=75.71 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=89.3
Q ss_pred EeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCCCcEEEEEEeC---CEEEEEecCCeEEEEeCCCCcceeEE
Q 002641 778 YSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSENGKVLSIACFR---DKIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fsp---d~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
...|+....++++.+.-++| +|++. ..-..+.||...|+.+.|+| |.+++|+-|..+..||++... .++.
T Consensus 75 ws~h~a~~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~y 152 (1081)
T KOG0309|consen 75 WSPHPAKPYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFY 152 (1081)
T ss_pred cccCCCCceeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-ccee
Confidence 34455567788888776666 69975 45566789999999999986 599999999999999999875 5667
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceeeecc
Q 002641 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIFIQV 895 (897)
Q Consensus 850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l~~~ 895 (897)
.+..-..+-+.|+|+--.-.+...+..+-|++||.+.| .+..++..
T Consensus 153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGH 200 (1081)
T ss_pred eeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccc
Confidence 77666666788999864434445566788999999987 66666553
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0061 Score=72.63 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=74.3
Q ss_pred cccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC-------EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641 782 AFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD-------KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (897)
Q Consensus 782 s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd-------~L~Sgs~DgtIrlWd~~~~~~~~i~~l~ 852 (897)
..+|.+++|+|.||+|.|-.+. +...++ .-..++.+|+++|| ++++||.-| +-++.-+--.-+.-..+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 4479999999999999988765 222222 23567899999996 799999999 655543311001112466
Q ss_pred ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 853 EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 853 gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.-.++|.++.|. |++++=++.+| |+|+|+.++
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~ 189 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTR 189 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEecccc
Confidence 667899999997 88999999888 799999887
No 307
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.90 E-value=0.00042 Score=78.04 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=45.5
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhc----CCCCCCCCCcccCCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER----GNSSCPITRQKLSST 211 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~----~~~~CP~Cr~~~~~~ 211 (897)
+-..+..|-+|.+.-.||+...|.|+|||.||.+|... .+.+||.|...++.+
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 44567889999999999999999999999999998863 356899999887655
No 308
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.85 E-value=0.001 Score=77.83 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=86.4
Q ss_pred EeeecccccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-C-EEEEEecCCeEEEEeCCCCcceeEEEee
Q 002641 778 YSPLAFEMVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D-KIFSGHSDGTIKVWTGRGSILHLIQQIR 852 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp-d-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~ 852 (897)
..++......+++++.|..+..||++ ..+..+..-......|+|+- + .+...+..+-|++||.+.+. .++..++
T Consensus 120 ~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-~pl~s~K 198 (1081)
T KOG0309|consen 120 INFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-TPLCSLK 198 (1081)
T ss_pred cccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC-cceEEec
Confidence 33444466789999999999999997 56666666667778899984 3 44444667789999999885 7789999
Q ss_pred ccCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCc
Q 002641 853 EHTKAVTGLAILQS-GEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 853 gH~~~V~slafspd-g~~L~SgS~D~tIrlWdi~~~ 887 (897)
+|...|+.++|..- ...+.+.+.|+||++||....
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 99999999999754 356889999999999998654
No 309
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.81 E-value=0.015 Score=67.72 Aligned_cols=112 Identities=9% Similarity=-0.063 Sum_probs=74.6
Q ss_pred EeeecccccEEEEec-CCCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEec-C--CeEEEEeCCCCcce
Q 002641 778 YSPLAFEMVKVLSNG-HDSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGHS-D--GTIKVWTGRGSILH 846 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs-~DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-D--gtIrlWd~~~~~~~ 846 (897)
...+++||++|+..+ .+|...+|.+. .....+..+.+.+....|+|| .|+..+. + ..|.+||+.++.
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-- 362 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-- 362 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC--
Confidence 346789999877665 46766777542 224445556667788999997 5554443 3 468999999885
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCccceee
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSL---DKTARVRSNDSFTYAIF 892 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~---D~tIrlWdi~~~~l~~l 892 (897)
...+......+....|+|||+.|+..+. +..|.+||+.++....+
T Consensus 363 -~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 363 -DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred -eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 2334333345678999999988775432 35788899988744333
No 310
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.001 Score=75.33 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=65.7
Q ss_pred ceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCc-----ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCC
Q 002641 805 LVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSI-----LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK 877 (897)
Q Consensus 805 ~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~-----~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~ 877 (897)
.+..+.||+..|..+.--. +-++|+|.|+|||+|.++..- ..|..++..|+++|.++.|..+-++++|+ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4566889999888885433 489999999999999998431 24677889999999999999888877755 89
Q ss_pred cEEEEeCCCc
Q 002641 878 TARVRSNDSF 887 (897)
Q Consensus 878 tIrlWdi~~~ 887 (897)
-|.+||.--|
T Consensus 805 giHlWDPFig 814 (1034)
T KOG4190|consen 805 GIHLWDPFIG 814 (1034)
T ss_pred cceeeccccc
Confidence 9999997554
No 311
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0013 Score=70.72 Aligned_cols=52 Identities=25% Similarity=0.487 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSST 211 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~ 211 (897)
..++.-.||+|..--.+|.++ -.|..||..||..|... ...||+++.+....
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v~ 348 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASVD 348 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchHH
Confidence 467788999999999999877 66999999999999984 55899998776543
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.69 E-value=0.0058 Score=73.52 Aligned_cols=106 Identities=10% Similarity=0.225 Sum_probs=84.4
Q ss_pred ecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEec---------CCeEEEEeCCCCc-----
Q 002641 781 LAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHS---------DGTIKVWTGRGSI----- 844 (897)
Q Consensus 781 ~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~---------DgtIrlWd~~~~~----- 844 (897)
+-.+++.+..|...|+|.+-|.+ +.++++..|++.|..+....+.|+|||. |..|+|||++.-.
T Consensus 183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred EEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 34467889999999999999998 8999999999999999999999999874 7789999998643
Q ss_pred ---------------------------cee------------EEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 845 ---------------------------LHL------------IQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 845 ---------------------------~~~------------i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
.+. +..+..-+..+..+.++++|+.++-|-.+|.|.+|--+
T Consensus 263 ~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 263 QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 000 01111123358889999999999999999999999744
Q ss_pred C
Q 002641 886 S 886 (897)
Q Consensus 886 ~ 886 (897)
.
T Consensus 343 ~ 343 (1118)
T KOG1275|consen 343 P 343 (1118)
T ss_pred C
Confidence 3
No 313
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.68 E-value=0.0085 Score=65.17 Aligned_cols=113 Identities=13% Similarity=0.166 Sum_probs=84.6
Q ss_pred ccceeEeeecccccEEEEecCCCCeEEEeCC---c----ceeeccCCCC------------cEEEEEEeCC----EEEEE
Q 002641 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR---E----LVHVDSSENG------------KVLSIACFRD----KIFSG 829 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~----~l~~l~gH~~------------~V~sV~fspd----~L~Sg 829 (897)
.+....+.+...|.+|++|..+|.|-++.-. + ....++.|.. .|..+.|.++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3666777888899999999999999988643 2 4455666643 5678888763 77777
Q ss_pred ecCCeEEEEeCCCCc---------------------------------ceeEEEe-eccCCCeEEEEEccCCCEEEEEeC
Q 002641 830 HSDGTIKVWTGRGSI---------------------------------LHLIQQI-REHTKAVTGLAILQSGEMLYSGSL 875 (897)
Q Consensus 830 s~DgtIrlWd~~~~~---------------------------------~~~i~~l-~gH~~~V~slafspdg~~L~SgS~ 875 (897)
.+|.+||+|.+.... ..+.+.+ .+|+-.|+++.++.|++.++|+.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999987432 0111121 35888999999999999888875
Q ss_pred CCcEEEEeCCC
Q 002641 876 DKTARVRSNDS 886 (897)
Q Consensus 876 D~tIrlWdi~~ 886 (897)
|=.|.+|++.-
T Consensus 184 dLRINLWnlei 194 (433)
T KOG1354|consen 184 DLRINLWNLEI 194 (433)
T ss_pred ceeeeeccccc
Confidence 77899998864
No 314
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.001 Score=70.58 Aligned_cols=47 Identities=19% Similarity=0.509 Sum_probs=39.2
Q ss_pred ccccccccCCC--Cce-ecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641 164 FVCPITTHIFD--DPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (897)
Q Consensus 164 l~CpIC~~l~~--dPV-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~ 210 (897)
.-|.||+.-|. |-+ ++||.|.|-..|+.+|+......||+||.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 56999999875 333 569999999999999998666789999988753
No 315
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.60 E-value=0.019 Score=74.12 Aligned_cols=107 Identities=12% Similarity=0.132 Sum_probs=76.2
Q ss_pred eeeccccc-EEEEecCCCCeEEEeCC-cceeeccC--------------C--------CCcEEEEEEeCC--EEEEEecC
Q 002641 779 SPLAFEMV-KVLSNGHDSSADFWNHR-ELVHVDSS--------------E--------NGKVLSIACFRD--KIFSGHSD 832 (897)
Q Consensus 779 ~~~s~d~~-~LaSgs~DgtIklWd~~-~~l~~l~g--------------H--------~~~V~sV~fspd--~L~Sgs~D 832 (897)
+.+++++. .+++.+.++.|++||+. .....+.+ + -.....++|+++ ++++-+.+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 45667776 55667778999999986 11111110 1 112457888886 78888889
Q ss_pred CeEEEEeCCCCcceeEEEeecc--------------CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641 833 GTIKVWTGRGSILHLIQQIREH--------------TKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT 888 (897)
Q Consensus 833 gtIrlWd~~~~~~~~i~~l~gH--------------~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~ 888 (897)
++|++||..++. +.++.+. -.....++++++|+.+++-+.+++|++||+.++.
T Consensus 825 ~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 825 HKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 999999998873 2333322 2357789999999999999999999999999873
No 316
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.55 E-value=0.02 Score=66.76 Aligned_cols=114 Identities=8% Similarity=-0.050 Sum_probs=70.7
Q ss_pred EeeecccccEEEEecC-----CCCeEEEeCC-----cceeeccCCCCcEEEEEEeCC--EEEEEe-cCCeEEEEeCC--C
Q 002641 778 YSPLAFEMVKVLSNGH-----DSSADFWNHR-----ELVHVDSSENGKVLSIACFRD--KIFSGH-SDGTIKVWTGR--G 842 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~-----DgtIklWd~~-----~~l~~l~gH~~~V~sV~fspd--~L~Sgs-~DgtIrlWd~~--~ 842 (897)
.-.++|||++|+..+. |..+.+|++. .......++.+......|+|| .|+..+ .+|..++|.+. .
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 4567899988876542 3334456653 122222233345567899998 455444 57776676543 2
Q ss_pred CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCC---CcEEEEeCCCccceee
Q 002641 843 SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD---KTARVRSNDSFTYAIF 892 (897)
Q Consensus 843 ~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D---~tIrlWdi~~~~l~~l 892 (897)
.. .....+..+...+....|+|||+.|+..+.+ ..|.+||+.++....+
T Consensus 315 ~g-~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L 366 (428)
T PRK01029 315 EG-QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL 366 (428)
T ss_pred cc-cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc
Confidence 11 1234455556677889999999988876543 4789999988844433
No 317
>PRK00178 tolB translocation protein TolB; Provisional
Probab=96.52 E-value=0.034 Score=64.71 Aligned_cols=112 Identities=8% Similarity=-0.015 Sum_probs=72.4
Q ss_pred EeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEE-EEecCC--eEEEEeCCCCcceeE
Q 002641 778 YSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIF-SGHSDG--TIKVWTGRGSILHLI 848 (897)
Q Consensus 778 ~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~-Sgs~Dg--tIrlWd~~~~~~~~i 848 (897)
...+++||++|+ +.+.++ .|.+||+. .....+..+.+......|+|| .++ +...+| .|.+||+.++....+
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 456788998876 455555 57777876 445556667666778899997 444 433344 577778777642222
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCC-C--cEEEEeCCCccceee
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLD-K--TARVRSNDSFTYAIF 892 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D-~--tIrlWdi~~~~l~~l 892 (897)
++.+ ......+|+|||+.++..+.+ + .|.+||+.++....+
T Consensus 327 -t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 327 -TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL 370 (430)
T ss_pred -ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc
Confidence 2222 334467899999998877643 3 578899988744433
No 318
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.43 E-value=0.0056 Score=66.49 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=82.3
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC---c--ceeeccCCC-----CcEEEEEEeCC---EEEEEecCCeEE
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---E--LVHVDSSEN-----GKVLSIACFRD---KIFSGHSDGTIK 836 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~--~l~~l~gH~-----~~V~sV~fspd---~L~Sgs~DgtIr 836 (897)
..|.-..+.+.+..|+..++|+ .|-.|-+|++. + -+-.++.|+ ..|++-.|+|. .++-.|+.|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 4456666777788888888886 68899999986 2 222334443 46888899994 777788899999
Q ss_pred EEeCCCCc--------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 837 VWTGRGSI--------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 837 lWd~~~~~--------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
+.|++..- +....-|.+-...|+.+.|+++|++++|-+. -||++||+.-
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 99999431 0001112233457899999999999998754 4899999943
No 319
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.012 Score=68.83 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=81.0
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC-----------------cceeeccCCCCcEEEEEEeCC--EEEEEecCCeE
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR-----------------ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTI 835 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----------------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtI 835 (897)
...+..+..+..+||.||.||.++|..++ .+-+++.||++.|.-+.|+.+ .|.|...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 34556677788899999999999998764 145678899999999999975 88888899999
Q ss_pred EEEeCCCCcceeEEEeec-cCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 836 KVWTGRGSILHLIQQIRE-HTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 836 rlWd~~~~~~~~i~~l~g-H~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
-||=+-.+. -+-..... .++-|.+++|..||..+...=.||.|.+=.
T Consensus 96 iVWmlykgs-W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 96 IVWMLYKGS-WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred EEEeeeccc-HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 999998774 11111222 344578999999998877666666655433
No 320
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.34 E-value=0.027 Score=59.54 Aligned_cols=101 Identities=7% Similarity=-0.159 Sum_probs=77.7
Q ss_pred EEEEecCCCCeEEEeCCcceeeccCCCCc--EEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE-EeeccCCCeEEE
Q 002641 787 KVLSNGHDSSADFWNHRELVHVDSSENGK--VLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ-QIREHTKAVTGL 861 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~~~l~~l~gH~~~--V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~-~l~gH~~~V~sl 861 (897)
.+.-++.|.++++.++..-...+..|... +.++++++| +.++.+....|-.|.+.......+. .....++.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 36677899999999987333334556544 888999987 8888888899999999865423334 344455566789
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 862 AILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 862 afspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.|+.....++.++.||++.|||++.-
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEeccc
Confidence 99999999999999999999999874
No 321
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0011 Score=52.44 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=39.2
Q ss_pred ccccccccCCCCceecCCCc-ccchHHHHHHHhcCCCCCCCCCccc
Q 002641 164 FVCPITTHIFDDPVTLETGQ-TYERRAIQEWIERGNSSCPITRQKL 208 (897)
Q Consensus 164 l~CpIC~~l~~dPV~l~CGH-tFCr~CI~~~~~~~~~~CP~Cr~~~ 208 (897)
-.|.||.+--.|.|+..||| -.|..|-.+.|......||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 56999999988988899999 5799999998886677899999875
No 322
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.29 E-value=0.0062 Score=65.22 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=85.2
Q ss_pred cccccceeEeeecccccEEEEecCCCCeEEEeCC-----cceeeccCCC-----CcEEEEEEeCC---EEEEEecCCeEE
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVHVDSSEN-----GKVLSIACFRD---KIFSGHSDGTIK 836 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~~l~gH~-----~~V~sV~fspd---~L~Sgs~DgtIr 836 (897)
..|.-..+...+..|...++|+ .|-.|-+|++. -.+-.++.|+ ..|++..|+|. .+.-.++.|+|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3455556667777777777776 67899999986 1233345564 35888899994 666678889999
Q ss_pred EEeCCCCc--------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc--cceee
Q 002641 837 VWTGRGSI--------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF--TYAIF 892 (897)
Q Consensus 837 lWd~~~~~--------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~--~l~~l 892 (897)
+-|++... ..-..-|.+-...|+.+.|+++|+++++-+. -|+++||++.. ++.+.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence 99999432 0011123344567889999999999998875 48999999875 55554
No 323
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.049 Score=60.33 Aligned_cols=188 Identities=20% Similarity=0.198 Sum_probs=130.9
Q ss_pred chhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHH
Q 002641 414 PKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVM 493 (897)
Q Consensus 414 p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~ 493 (897)
-+-.|+--|+-++-.+| ||..+++.||+.-++..+++.+.+-|..||.+|-.|.|....+-..+-....+..++
T Consensus 99 ~ke~ald~Le~lve~iD------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDID------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred HHHHHHHHHHHHHHhhh------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34567777777777777 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CcchhHHHHHHHHHHHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHH-HHhhhhhcCcc
Q 002641 494 ESFMAA-SDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGL-LLQLDLLAEPR 571 (897)
Q Consensus 494 ~ll~~~-~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~l-llqld~l~~~~ 571 (897)
..|-.. ...+|-.|+..++.|++-+.-. ..+|+ .-++ -..|...+|+-..+.+.-+-++ |++.=+..++.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g-~~~fl----~~~G---~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPG-QDEFL----KLNG---YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHH-HHHHH----hcCC---HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 998874 5556788899999998876421 22222 1111 2344455555334444433333 33333334455
Q ss_pred cccccHHHHHHHHHHHhhcCCchHHHHHHHHHHHhcccccccCC
Q 002641 572 KMSIYREEAIDTLISCLRNSDYPAAQLAAAKTIVSLQGRFTTSG 615 (897)
Q Consensus 572 ~~s~~reea~~~~~~~l~~~~~~~~q~~~~~~l~~l~g~~s~sg 615 (897)
.-.+...+-....+..+.......+++.+-.+++.+--.++..+
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 54566666666666666666555666666666665444444433
No 324
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.21 E-value=0.084 Score=59.76 Aligned_cols=116 Identities=9% Similarity=0.064 Sum_probs=93.1
Q ss_pred cccccceeEeeecccccEEEEecCCC-CeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641 770 KGLRELRKYSPLAFEMVKVLSNGHDS-SADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 770 ~~~~~~~~~~~~s~d~~~LaSgs~Dg-tIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
-++...+....+..++.-++.|..|| .+-|+|.+ ..++.+.+.-+.|.+|..++| .++.+-....+-+.|+.+++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 34556688888888888899999998 89999998 566777888899999999998 455555557888899999852
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCc
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDK----TARVRSNDSF 887 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~----tIrlWdi~~~ 887 (897)
+. .-+...+-|+.+.|+|++++|+-+-.+| .|+++|+.++
T Consensus 436 ~~--idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 436 RL--IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred eE--ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 22 2334456799999999999999887776 7899999987
No 325
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.18 E-value=0.053 Score=63.66 Aligned_cols=111 Identities=9% Similarity=0.014 Sum_probs=69.3
Q ss_pred EeeecccccEEEE-ecCCCC--eEEEeCC-cceeeccCCCCcEEEEEEeCC--E-EEEEecCCe--EEEEeCCCCcceeE
Q 002641 778 YSPLAFEMVKVLS-NGHDSS--ADFWNHR-ELVHVDSSENGKVLSIACFRD--K-IFSGHSDGT--IKVWTGRGSILHLI 848 (897)
Q Consensus 778 ~~~~s~d~~~LaS-gs~Dgt--IklWd~~-~~l~~l~gH~~~V~sV~fspd--~-L~Sgs~Dgt--IrlWd~~~~~~~~i 848 (897)
...+++||+.|+. .+.++. |.+||+. .....+..+........|+|| . +++...+|. |.++|+.+++...+
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 4567889997764 566675 6666765 445556666667788899997 4 444444454 55667766642221
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeC-CCc--EEEEeCCCcccee
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSL-DKT--ARVRSNDSFTYAI 891 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~-D~t--IrlWdi~~~~l~~ 891 (897)
++.++ .....+|+|||++|+..+. ++. |.++|+.++..+.
T Consensus 346 -t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 346 -TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred -ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 23333 3445789999998877654 443 4556777774433
No 326
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.16 E-value=0.0085 Score=41.94 Aligned_cols=35 Identities=37% Similarity=0.555 Sum_probs=30.4
Q ss_pred ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe
Q 002641 805 LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 805 ~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd 839 (897)
....+..|...|.++.|+++ .+++|+.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566788999999999986 999999999999996
No 327
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.0062 Score=68.82 Aligned_cols=109 Identities=16% Similarity=0.232 Sum_probs=83.9
Q ss_pred eEeeecccccEEEEecCCCCeEEEeCC--------------c-ceeeccCCCC--cEEEEEEeC-C--EEEEEecCCeEE
Q 002641 777 KYSPLAFEMVKVLSNGHDSSADFWNHR--------------E-LVHVDSSENG--KVLSIACFR-D--KIFSGHSDGTIK 836 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~DgtIklWd~~--------------~-~l~~l~gH~~--~V~sV~fsp-d--~L~Sgs~DgtIr 836 (897)
....++.++.-+.++-.|--|.+++-. . ...+++||.+ .|-.|.|.. . +++|||.=|.|-
T Consensus 340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence 344455556666666667777777532 1 2234889953 488999884 3 999999989999
Q ss_pred EEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 837 VWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 837 lWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+|+-+++ +.++.+.|-+.-|+|+.=+|---.|+|.|.|..||||-..+.
T Consensus 420 iW~K~t~--eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 420 IWDKKTG--EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred EEecchh--HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 9999998 577888887778999998888889999999999999988554
No 328
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.00 E-value=0.037 Score=67.63 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=125.3
Q ss_pred ccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHH
Q 002641 433 IVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLS 512 (897)
Q Consensus 433 ~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~ 512 (897)
.|..+..+++..|.|+.|+++|+.++.+-.+.++++| +-+...+.+++.|++..-+++++.+|.+.+......++.+|+
T Consensus 278 ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL-kkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 278 EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFL-KKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLF 356 (708)
T ss_pred cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3445788999999999999999999988777766555 455666778999999999999999999988888888999999
Q ss_pred HHHhhchhhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHHHHhhhhhcCcccccccHHHHHHHHHHHhhcCC
Q 002641 513 ELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSD 592 (897)
Q Consensus 513 el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~ 592 (897)
-|+.-+.-. ..+-+.|.+..+--|| . .+..+.++-.+|.||-.-++.+.+-.|. +++..+++.|-...
T Consensus 357 NLSfd~~~R------~~mV~~GlIPkLv~LL---~--d~~~~~val~iLy~LS~dd~~r~~f~~T-dcIp~L~~~Ll~~~ 424 (708)
T PF05804_consen 357 NLSFDPELR------SQMVSLGLIPKLVELL---K--DPNFREVALKILYNLSMDDEARSMFAYT-DCIPQLMQMLLENS 424 (708)
T ss_pred HhCcCHHHH------HHHHHCCCcHHHHHHh---C--CCchHHHHHHHHHHhccCHhhHHHHhhc-chHHHHHHHHHhCC
Confidence 998865322 4667777777555554 2 3556677888999999987777777766 59999999887766
Q ss_pred chHHHHHHHHHHHhc
Q 002641 593 YPAAQLAAAKTIVSL 607 (897)
Q Consensus 593 ~~~~q~~~~~~l~~l 607 (897)
.++++......+.||
T Consensus 425 ~~~v~~eliaL~iNL 439 (708)
T PF05804_consen 425 EEEVQLELIALLINL 439 (708)
T ss_pred CccccHHHHHHHHHH
Confidence 666665544444444
No 329
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.99 E-value=0.0022 Score=71.78 Aligned_cols=44 Identities=25% Similarity=0.542 Sum_probs=37.4
Q ss_pred cccccccccCCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 163 DFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 163 el~CpIC~~l~~dPV----~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
--+||||++-|.+-| ++.|.|+|-..|+..||. .+||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 348999999998877 469999999999999986 48999987654
No 330
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.96 E-value=0.077 Score=68.58 Aligned_cols=112 Identities=9% Similarity=0.044 Sum_probs=75.9
Q ss_pred eeecc-cccEEEEecCCCCeEEEeCC-cceeeccCC---------------CCcEEEEEEeCC---EEEEEecCCeEEEE
Q 002641 779 SPLAF-EMVKVLSNGHDSSADFWNHR-ELVHVDSSE---------------NGKVLSIACFRD---KIFSGHSDGTIKVW 838 (897)
Q Consensus 779 ~~~s~-d~~~LaSgs~DgtIklWd~~-~~l~~l~gH---------------~~~V~sV~fspd---~L~Sgs~DgtIrlW 838 (897)
+.+++ ++..+++.+.++.|++||.. ..+.++.+. -...+.++|+|+ ++++-+.++.|++|
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 45555 56677888888999999976 333333221 123557899986 56666778999999
Q ss_pred eCCCCcceeEE-----------Eeec--------cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccce
Q 002641 839 TGRGSILHLIQ-----------QIRE--------HTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYA 890 (897)
Q Consensus 839 d~~~~~~~~i~-----------~l~g--------H~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~ 890 (897)
|+.++....+. .+.. .-.....++|+++|+.+++-+.+++|++||..++.+.
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 99876311111 0100 1113468999999999999999999999999887443
No 331
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0089 Score=73.55 Aligned_cols=72 Identities=25% Similarity=0.497 Sum_probs=66.1
Q ss_pred CCCCcccccccccCCCCceecC-CCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLE-TGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNP 232 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~-CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~ 232 (897)
+.|++|.-||...+|.|||++| .|++-||+-|.+++-. ..+-|.||.+++.+.+ .||-.|++-|+.|..++.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v-~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMV-SPNEELKAKIRCWIKEKR 938 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhc-CCCHHHHHHHHHHHHHhh
Confidence 6999999999999999999997 9999999999998875 4578999999999999 699999999999987654
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.02 Score=63.53 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=68.8
Q ss_pred ceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCC-CEEEEEeCCCcEE
Q 002641 805 LVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSG-EMLYSGSLDKTAR 880 (897)
Q Consensus 805 ~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg-~~L~SgS~D~tIr 880 (897)
....+.+|...|..++|+|. ++..++.+.+|+|.|+++. ..+..+..| ..+++++|+-|. ++|+.|-..|.|.
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 34456778889999999994 7999999999999999998 467778877 889999999875 7888888999999
Q ss_pred EEeCCCc
Q 002641 881 VRSNDSF 887 (897)
Q Consensus 881 lWdi~~~ 887 (897)
++|++..
T Consensus 262 vyD~R~~ 268 (463)
T KOG1645|consen 262 VYDMRQP 268 (463)
T ss_pred EEEccCC
Confidence 9999874
No 333
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.87 E-value=0.012 Score=64.02 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=81.5
Q ss_pred EEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCC---cceeEEEeeccCCCeEEEE
Q 002641 789 LSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS---ILHLIQQIREHTKAVTGLA 862 (897)
Q Consensus 789 aSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~---~~~~i~~l~gH~~~V~sla 862 (897)
++.+.+-.|-+-|+. .....|. .++.|+++.|.. ++++.|...|.|-..|++.. +..+.+.+- |..+|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 667777778888876 3334443 678899999986 39999999999999999864 234444444 899999998
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCc-c---ceeeeccc
Q 002641 863 ILQ-SGEMLYSGSLDKTARVRSNDSF-T---YAIFIQVV 896 (897)
Q Consensus 863 fsp-dg~~L~SgS~D~tIrlWdi~~~-~---l~~l~~~~ 896 (897)
... ++.+|.+.+.+|+|++||.+-- + ++.+..+|
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 776 6889999999999999999875 4 56665554
No 334
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.84 E-value=0.033 Score=59.82 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=82.1
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-------cceeeccCCCC------------cEEEEEEeCC----EEEEEe
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-------ELVHVDSSENG------------KVLSIACFRD----KIFSGH 830 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-------~~l~~l~gH~~------------~V~sV~fspd----~L~Sgs 830 (897)
.....+.+...|.|+++|...|.|-++.-. +....|++|.. .|..+.|..+ .++-..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 556667778889999999999999998743 34555777753 4678888753 677778
Q ss_pred cCCeEEEEeCCCCc----------------------------------------ceeEEEe-eccCCCeEEEEEccCCCE
Q 002641 831 SDGTIKVWTGRGSI----------------------------------------LHLIQQI-REHTKAVTGLAILQSGEM 869 (897)
Q Consensus 831 ~DgtIrlWd~~~~~----------------------------------------~~~i~~l-~gH~~~V~slafspdg~~ 869 (897)
.|.+||+|.+.... ..+.+.. ..|.-.+.++.|..|.+.
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 99999999987542 0001111 357778899999999888
Q ss_pred EEEEeCCCcEEEEeCCC
Q 002641 870 LYSGSLDKTARVRSNDS 886 (897)
Q Consensus 870 L~SgS~D~tIrlWdi~~ 886 (897)
++|+. |-.|.+|++.-
T Consensus 187 ~lSaD-dLrINLWnl~i 202 (460)
T COG5170 187 LLSAD-DLRINLWNLEI 202 (460)
T ss_pred eeecc-ceeeeeccccc
Confidence 87764 77899998764
No 335
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.0058 Score=63.24 Aligned_cols=52 Identities=17% Similarity=0.484 Sum_probs=45.4
Q ss_pred CcccccccccCCCCce----ecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641 162 KDFVCPITTHIFDDPV----TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (897)
Q Consensus 162 ~el~CpIC~~l~~dPV----~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~ 214 (897)
..|.||+|.+.+.+.+ .-+|||.||..|.++++.. ...||+|..++..++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDII 275 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceE
Confidence 6799999999999865 3399999999999998874 56899999999988885
No 336
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.77 E-value=0.056 Score=58.65 Aligned_cols=99 Identities=16% Similarity=0.090 Sum_probs=71.6
Q ss_pred ccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCccee
Q 002641 773 RELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHL 847 (897)
Q Consensus 773 ~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~ 847 (897)
..++...|-......+...+.|+.|.+|++. +--..+......+.++.|||| +|.+...|-.|.||.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--- 125 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--- 125 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce---
Confidence 3455555555455566777889999999987 333344556778999999997 78888889999999999873
Q ss_pred EEEeeccCCCeEEEEEccCCCEEEEEe
Q 002641 848 IQQIREHTKAVTGLAILQSGEMLYSGS 874 (897)
Q Consensus 848 i~~l~gH~~~V~slafspdg~~L~SgS 874 (897)
..-+.--+..+..++|+|||++.+-.+
T Consensus 126 ~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 126 GYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred eEEecccccCceeEEECCCCceeeeee
Confidence 222222223467889999999877766
No 337
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=0.025 Score=58.85 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=73.2
Q ss_pred ccEEEEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeC-C--EEEEEecCCeEEEEeCCCCcceeEEEeeccC-CC
Q 002641 785 MVKVLSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFR-D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KA 857 (897)
Q Consensus 785 ~~~LaSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~-~~ 857 (897)
+..++.|+.||.|.+|+.. .....+.+-...|-+..-.. + +..+|+.||.||.|++... +.+.....|+ ..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--KVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--ceeeeeccccCCC
Confidence 5678899999999999976 22222222233333332222 3 8889999999999999987 4566666777 67
Q ss_pred eEEEEEccCCCEEEEE--eCCCcEEEEeCCCc
Q 002641 858 VTGLAILQSGEMLYSG--SLDKTARVRSNDSF 887 (897)
Q Consensus 858 V~slafspdg~~L~Sg--S~D~tIrlWdi~~~ 887 (897)
+.....+..++.+.++ |.|..++.||+..-
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 7777777778888888 88999999988653
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.68 E-value=0.055 Score=64.01 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=83.5
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-cc--eeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCccee-
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-EL--VHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHL- 847 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~--l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~- 847 (897)
..+.+..++..+.+++.|+.-|.+.+++-. .. .....+-.+.+.....|++ +.+.|+..|.|-++.+..+....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 455667777789999999999999999955 22 2223334455555667775 88888889999999887643111
Q ss_pred --EEEe-eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 848 --IQQI-REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 848 --i~~l-~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
+..+ +.|...|++++|+++|..+++|..-|+|.+-.+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1122 23677899999999999999999999998877666
No 339
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.12 Score=59.76 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=73.7
Q ss_pred eEeeecccccEE--EEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecC---CeEEEEeCCCCcceeE
Q 002641 777 KYSPLAFEMVKV--LSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD---GTIKVWTGRGSILHLI 848 (897)
Q Consensus 777 ~~~~~s~d~~~L--aSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~D---gtIrlWd~~~~~~~~i 848 (897)
....++++++-+ +-|-.-.++.|+|.+ .++..+- .++=.++-|+|. +++-+|.+ |.|-+||+.+. +++
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i 349 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLI 349 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch--hhc
Confidence 333344455433 334455788899988 6665553 455567889985 55555543 89999999986 577
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCc
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSL------DKTARVRSNDSF 887 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~------D~tIrlWdi~~~ 887 (897)
..+..-.. +.+.|+|||++|+++++ |..++||+..+.
T Consensus 350 ~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 AKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 77765444 55799999999999975 578999998775
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.041 Score=64.35 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=64.5
Q ss_pred CCcEEEEEEeC--CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE-EEEEccCCCEEEEEeCCCcEEEEeCCCc-c
Q 002641 813 NGKVLSIACFR--DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT-GLAILQSGEMLYSGSLDKTARVRSNDSF-T 888 (897)
Q Consensus 813 ~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~-slafspdg~~L~SgS~D~tIrlWdi~~~-~ 888 (897)
.-.+..+.|+| |++|.+-.+|.|-+..+.- +-+.++.-|...|+ +++|.|||+.|+.|=.||+|++-|+.+| .
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 34577889999 4999999999998888873 35788887888777 9999999999999999999999999988 5
Q ss_pred cee
Q 002641 889 YAI 891 (897)
Q Consensus 889 l~~ 891 (897)
+..
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 443
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.50 E-value=0.063 Score=62.68 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=59.7
Q ss_pred cccceeEeeecccccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCC
Q 002641 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~ 843 (897)
+...+.+...+++..+++.|+.||+|.+||....+..+.-+.-.++.++|+|+ .++.|+.-|.+.+||+.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34567888889999999999999999999988444444455566889999997 9999999999999998743
No 342
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.49 E-value=0.075 Score=49.23 Aligned_cols=118 Identities=12% Similarity=0.153 Sum_probs=89.2
Q ss_pred hHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHH
Q 002641 386 TLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAA 465 (897)
Q Consensus 386 ~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~ 465 (897)
++.+.+.++.|+..|..++.. -+..|+..|.-+-..+ ..+...++..|+++.++..+..++.+-+..+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~-------~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a 69 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDEN-------VQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKSEDEEVVKAA 69 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHH-------HHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhCCCHHHHHHH
Confidence 466788899999999876533 2345666666665543 3477788889999999999999988888877
Q ss_pred HHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHH
Q 002641 466 VGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 515 (897)
Q Consensus 466 ~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~ 515 (897)
+..|-.-.+.....+..+.+..-+..++++|...+...+..++.+|..|.
T Consensus 70 ~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 66655444444466777888889999999999888888888888887653
No 343
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.48 E-value=0.011 Score=64.20 Aligned_cols=54 Identities=22% Similarity=0.555 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCCc---eec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641 159 TPPKDFVCPITTHIFDDP---VTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dP---V~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~ 214 (897)
.-...|.|||++..|..- |.+ +|||.|+..|+.+.- ....||+|++++...++|
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 356689999999999542 233 999999999999873 244799999999887764
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.44 E-value=0.42 Score=44.75 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=66.3
Q ss_pred eeecccc-cEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeC-CEEEEEecCCeEEEEeCCCCcceeEEEeeccCC
Q 002641 779 SPLAFEM-VKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK 856 (897)
Q Consensus 779 ~~~s~d~-~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fsp-d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~ 856 (897)
..+..+| +.|+.||.|..||+|+-...+..+.. .+.|.+++-.. ..|+-+-..|||-+|+-... +...+....
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----lWRiKSK~~ 82 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----LWRIKSKNQ 82 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce----eeeeccCCC
Confidence 3334443 47999999999999998877666654 45566666655 59999999999999986543 334443333
Q ss_pred CeEEEEEc-cC--C-CEEEEEeCCCcEE
Q 002641 857 AVTGLAIL-QS--G-EMLYSGSLDKTAR 880 (897)
Q Consensus 857 ~V~slafs-pd--g-~~L~SgS~D~tIr 880 (897)
++++++. .+ | ..|++|-.+|.|-
T Consensus 83 -~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 83 -VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5666554 33 3 4799998888764
No 345
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.64 Score=51.52 Aligned_cols=201 Identities=19% Similarity=0.197 Sum_probs=131.1
Q ss_pred HhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCchH----HHHHHHHhCCChhh---HHHHh--h
Q 002641 322 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLE----AVVLIDLLRPSTRT---LIEMD--M 392 (897)
Q Consensus 322 L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~~e----a~~LL~~L~~~~~~---i~~~~--~ 392 (897)
|.++.+..|.+-+...|+.+-...+. ++.+. ..+.+.-+|.++|++..+ +...|-.+.-.... +.+-+ +
T Consensus 175 LakskdirvqrnatgaLlnmThs~En-Rr~LV-~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHSREN-RRVLV-HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhhhhh-hhhhh-ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 67788888888888888888655443 33333 235578899999998333 33455555544433 33444 7
Q ss_pred HHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhh
Q 002641 393 MESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (897)
Q Consensus 393 ~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c 472 (897)
+|+|+.+...++++ .|. -|++||=. .++| .+--..++..|++|.+++.+.+.. .--+.+--.-+++
T Consensus 253 v~~Lv~Lmd~~s~k-vkc-----qA~lALrn---lasd----t~Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrn 318 (550)
T KOG4224|consen 253 VPALVDLMDDGSDK-VKC-----QAGLALRN---LASD----TEYQREIVEAGSLPLLVELLQSPM-GPLILASVACIRN 318 (550)
T ss_pred HHHHHHHHhCCChH-HHH-----HHHHHHhh---hccc----chhhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhh
Confidence 89999999988776 332 24555431 1222 235567899999999999996432 2222221122355
Q ss_pred ccccCcchhhHhhhcchhhHHHHHhhc-CcchhHHHHHHHHHHHhhc-------hhhhhHHHHHHhhccCccch
Q 002641 473 MQEDGKCRNSIADKAELAPVMESFMAA-SDGERFEIVCFLSELVKLN-------RRTFNEQILHIIKDEGTYSS 538 (897)
Q Consensus 473 ~~~~~~cr~~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~l~el~~~~-------r~~~~~~~l~~i~~~g~~~~ 538 (897)
+....---..|+|..=+.|++++|+-+ ++..++.|+..|-.|--.. |.+++++.|.++--.|+++.
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSV 392 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhH
Confidence 555566667899999999999999985 5558999999999988755 34455555666655555443
No 346
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.048 Score=60.33 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=50.5
Q ss_pred cccccccccCCC------CceecCCCcccchHHHHHHHhcCCCCCCCCCccc--CC---CCCCcccHHHHHHHHHH
Q 002641 163 DFVCPITTHIFD------DPVTLETGQTYERRAIQEWIERGNSSCPITRQKL--SS---TKLPKTNYVLKRLIASW 227 (897)
Q Consensus 163 el~CpIC~~l~~------dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~--~~---~~~~~pN~~L~~li~~~ 227 (897)
.+.|-||.+.|. -|-.+.|||++|..|+...+......||.||.+. .. ..+ ..|+.+-.+++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l-~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSL-QKNFALLQAIEHM 77 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhh-hhhHHHHHHHHHH
Confidence 356888888876 3777899999999999988876666899999984 22 235 5788888888876
No 347
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.37 E-value=0.37 Score=51.83 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=31.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641 855 TKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAI 891 (897)
Q Consensus 855 ~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~ 891 (897)
...|..+..||||..|++...+|.|.+|++-+- .++.
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 457899999999999999999999999999775 4433
No 348
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.24 E-value=0.44 Score=54.48 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=73.2
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--E-EEEEecCCeEEEEeCCCCcceeEE
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--K-IFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~-L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
......+++||+++...+.||.|.+||+. +.+..+.... ....+++++| + ++++..++++.++|.++. +.+.
T Consensus 38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--e~v~ 114 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--EPVK 114 (369)
T ss_dssp EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEE
T ss_pred ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc--ccee
Confidence 34556688999999999999999999987 6776665543 4678999997 4 445567899999999987 4555
Q ss_pred Eeec-------cCCCeEEEEEccCCCEEEEEeCC-CcEEEEeCCCc
Q 002641 850 QIRE-------HTKAVTGLAILQSGEMLYSGSLD-KTARVRSNDSF 887 (897)
Q Consensus 850 ~l~g-------H~~~V~slafspdg~~L~SgS~D-~tIrlWdi~~~ 887 (897)
.+.. ....|..+..+|.+..++..-.| +.|-+-|....
T Consensus 115 ~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 115 TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 5543 23467888888988866666655 66655576554
No 349
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0056 Score=64.20 Aligned_cols=54 Identities=22% Similarity=0.498 Sum_probs=43.6
Q ss_pred CCcccccccccCCCCce----------ecCCCcccchHHHHHHHhcC-CCCCCCCCcccCCCCCC
Q 002641 161 PKDFVCPITTHIFDDPV----------TLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKLP 214 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV----------~l~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~~~~~~~~ 214 (897)
.++-.|.||++-+.+-+ .+.|+|+|-..||..|.--| ..+||.|++.+.....+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 35678999999887666 67999999999999997644 45899999888766553
No 350
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.014 Score=65.08 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=40.8
Q ss_pred CCcccccccccCCCCce-----e---cCCCcccchHHHHHHHhcC------CCCCCCCCcccC
Q 002641 161 PKDFVCPITTHIFDDPV-----T---LETGQTYERRAIQEWIERG------NSSCPITRQKLS 209 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV-----~---l~CGHtFCr~CI~~~~~~~------~~~CP~Cr~~~~ 209 (897)
-.+..|-||++...+++ . .+|-|+||..||..|-... .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 55889999999999988 3 4799999999999998532 357999998754
No 351
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.11 Score=57.31 Aligned_cols=50 Identities=20% Similarity=0.464 Sum_probs=36.7
Q ss_pred ccccccccCCCCce---ec-CCCcccchHHHHHHHhcCC--CCCCCCCcccCCCCC
Q 002641 164 FVCPITTHIFDDPV---TL-ETGQTYERRAIQEWIERGN--SSCPITRQKLSSTKL 213 (897)
Q Consensus 164 l~CpIC~~l~~dPV---~l-~CGHtFCr~CI~~~~~~~~--~~CP~Cr~~~~~~~~ 213 (897)
..|.||.+.+-.-- -+ .|||+|--.|+++|++... ..||+|+-.+..+.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~ 60 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHV 60 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceee
Confidence 46999966553211 13 5999999999999999653 479999966655555
No 352
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.56 E-value=0.75 Score=51.98 Aligned_cols=118 Identities=15% Similarity=0.094 Sum_probs=78.7
Q ss_pred ceeEeeecccccEE-EEecCCCCeEEEeCC------cc---eeeccC-C--CCcEEEEEEeCC---EEEEEecCCeEEEE
Q 002641 775 LRKYSPLAFEMVKV-LSNGHDSSADFWNHR------EL---VHVDSS-E--NGKVLSIACFRD---KIFSGHSDGTIKVW 838 (897)
Q Consensus 775 ~~~~~~~s~d~~~L-aSgs~DgtIklWd~~------~~---l~~l~g-H--~~~V~sV~fspd---~L~Sgs~DgtIrlW 838 (897)
..+-..+.++++++ +..-.+++|.++++. +. +.++.. . ......+.++|| +++|.-.+++|-+|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 34456677787766 455667889988865 11 112211 1 236889999998 55556667899999
Q ss_pred eCC--CCcceeEEEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeC--CCccceee
Q 002641 839 TGR--GSILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSN--DSFTYAIF 892 (897)
Q Consensus 839 d~~--~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi--~~~~l~~l 892 (897)
++. ++.+..+..+.........++|+|+|++|+.+. .+++|.+|++ .+|.+...
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 994 455566666665566689999999999999887 5679999976 46655443
No 353
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.54 E-value=0.016 Score=63.71 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=40.0
Q ss_pred cccccccCCCCceecCCCcccchHHHHHHHhcC-CCCCCCCCcccCCCC
Q 002641 165 VCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTK 212 (897)
Q Consensus 165 ~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~~~~~~ 212 (897)
.|.||-+-=+|=-+-+|||-.|-.|+..|.... ..+||.||-.+....
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 699999988886666999999999999998643 668999998876544
No 354
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.32 E-value=0.17 Score=46.88 Aligned_cols=79 Identities=9% Similarity=0.074 Sum_probs=66.5
Q ss_pred hhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhc
Q 002641 440 TIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN 518 (897)
Q Consensus 440 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~ 518 (897)
.++..|+++.|++.+..++.+.|..++..|-.-......++..+.+..-+..++++|...+...+..++..|..|...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3578899999999999999888888777765444444788888899899999999999888889999999999998765
No 355
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.26 E-value=0.18 Score=60.19 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=79.8
Q ss_pred ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC-----C---------EEEEEecCCeEEEEeCCCCcceeE
Q 002641 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR-----D---------KIFSGHSDGTIKVWTGRGSILHLI 848 (897)
Q Consensus 785 ~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp-----d---------~L~Sgs~DgtIrlWd~~~~~~~~i 848 (897)
+..||-|+. ..|.+-|.. +.+..+.-|...|+.|.|.| | +|+++.-.|.|-+||...+ ..+
T Consensus 26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~ 102 (1062)
T KOG1912|consen 26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVI 102 (1062)
T ss_pred cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhh
Confidence 446666654 466777866 88999999999999999986 1 5777777899999999987 456
Q ss_pred EEeeccCCCeEEEEEccC---C-CEEEEEeCCCcEEEEeCCCc
Q 002641 849 QQIREHTKAVTGLAILQS---G-EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 849 ~~l~gH~~~V~slafspd---g-~~L~SgS~D~tIrlWdi~~~ 887 (897)
..+..|.++|..+.|-+. . ..|+.-..-.++-+||..+|
T Consensus 103 ~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 103 NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence 778889999999999763 4 45666667789999999988
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.15 Score=59.90 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=69.4
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEE-EEEEeCC--EEEEEecCCeEEEEeCCCCcceeEE
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVL-SIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~-sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
.......++|....||.+..+|.+-+..+. +.+.++..|+.+|+ +++|.|| .|+.|-.||+|++.|+.++. .+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~--~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG--RLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC--cee
Confidence 445566677888899999999999888887 77778877877777 9999998 99999999999999999873 333
Q ss_pred E-eeccCCCeEEEEEc
Q 002641 850 Q-IREHTKAVTGLAIL 864 (897)
Q Consensus 850 ~-l~gH~~~V~slafs 864 (897)
. ...-...|+++-|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 3 22234567777775
No 357
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.028 Score=61.04 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=41.2
Q ss_pred CcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (897)
Q Consensus 162 ~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~ 210 (897)
++-.||||.---...|..||||.-|+.||.+++-. .+.|=.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceeee
Confidence 57889999998888999999999999999998874 5579999877543
No 358
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.12 E-value=0.46 Score=55.18 Aligned_cols=92 Identities=10% Similarity=0.098 Sum_probs=65.7
Q ss_pred CeEEEeCCcceeecc-CCCCcEEEEEEeCC--E--EEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEE
Q 002641 796 SADFWNHRELVHVDS-SENGKVLSIACFRD--K--IFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870 (897)
Q Consensus 796 tIklWd~~~~l~~l~-gH~~~V~sV~fspd--~--L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L 870 (897)
++.+.++..--..+. ...++|+++.|+|+ . ++-|-.-.++.++|++.. ++..|. .++=+++-|+|.|++|
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~--egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP--EGPRNTAFFNPHGNII 326 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC--CCCccceEECCCCCEE
Confidence 466666651111222 34799999999996 3 344556689999999875 455554 5566788899999999
Q ss_pred EEEeCC---CcEEEEeCCCc-cceee
Q 002641 871 YSGSLD---KTARVRSNDSF-TYAIF 892 (897)
Q Consensus 871 ~SgS~D---~tIrlWdi~~~-~l~~l 892 (897)
+-+|.+ |.|-|||+.+. ++..+
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEeecCCCCCceEEEeccchhhcccc
Confidence 999865 79999999886 55443
No 359
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.06 E-value=0.011 Score=69.81 Aligned_cols=51 Identities=18% Similarity=0.442 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCcee---cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCC
Q 002641 161 PKDFVCPITTHIFDDPVT---LETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV~---l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~ 212 (897)
...-.||+|+.-+.|-.+ ..|+|-||..||..|-+- ..+||+||..|....
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhheee
Confidence 456689999999988765 389999999999998773 458999999876443
No 360
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=0.29 Score=54.06 Aligned_cols=215 Identities=16% Similarity=0.172 Sum_probs=136.8
Q ss_pred HHHHHHHHhCCChhhHHHHhhHHHHHHH--HHh-hcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHH
Q 002641 372 EAVVLIDLLRPSTRTLIEMDMMESLMTV--IKK-KEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFE 448 (897)
Q Consensus 372 ea~~LL~~L~~~~~~i~~~~~~~~Ll~~--l~~-~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~ 448 (897)
-|.--|..|...+.+...++-.++|--+ |.+ ++.+ +++. ..+.++.- .+.-+|+..+|..|++|
T Consensus 145 naVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdir-vqrn---------atgaLlnm---Ths~EnRr~LV~aG~lp 211 (550)
T KOG4224|consen 145 NAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIR-VQRN---------ATGALLNM---THSRENRRVLVHAGGLP 211 (550)
T ss_pred eehhhhhhhhccccchhhhhhccchhhhHhhcccchhh-HHHH---------HHHHHHHh---hhhhhhhhhhhccCCch
Confidence 3455778888888888888777773222 333 3333 2211 22222210 11227999999999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhc--chhhHHHHHhhcCcchhHHHHHHHHHHHhhchhhhhHHH
Q 002641 449 SVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKA--ELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFNEQI 526 (897)
Q Consensus 449 ~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~~~~~~ 526 (897)
.|++.+++||...|--+..- +.+|+.|..-|.-++|.. -+..+++|+...++++++-|-..|--|.. -++.
T Consensus 212 vLVsll~s~d~dvqyyctta-isnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas------dt~Y 284 (550)
T KOG4224|consen 212 VLVSLLKSGDLDVQYYCTTA-ISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS------DTEY 284 (550)
T ss_pred hhhhhhccCChhHHHHHHHH-hhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc------cchh
Confidence 99999999999999886543 468999999999999998 67899999999999999887555544322 2345
Q ss_pred HHHhhccCccchhhHHHHHHHhcCcCCcchH-HHHHHhhhhhcCccccc-ccHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 002641 527 LHIIKDEGTYSSMHTLLVYLQTANHDQCPVV-AGLLLQLDLLAEPRKMS-IYREEAIDTLISCLRNSDYPAAQLAAAKTI 604 (897)
Q Consensus 527 l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~-a~lllqld~l~~~~~~s-~~reea~~~~~~~l~~~~~~~~q~~~~~~l 604 (897)
-.+|.+.|++.. ++.|-+.|. -|++ |...--..+=+-|..-+ |--.-.+.-|+.-|++.+....|-.+-.+|
T Consensus 285 q~eiv~ag~lP~----lv~Llqs~~--~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 285 QREIVEAGSLPL----LVELLQSPM--GPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred hhHHHhcCCchH----HHHHHhCcc--hhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 567777776543 222223332 1222 22211112222222211 111112444788889999988999999999
Q ss_pred Hhcccccc
Q 002641 605 VSLQGRFT 612 (897)
Q Consensus 605 ~~l~g~~s 612 (897)
-+|.|.+-
T Consensus 359 rnLAasse 366 (550)
T KOG4224|consen 359 RNLAASSE 366 (550)
T ss_pred HHHhhhhh
Confidence 99998553
No 361
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.80 E-value=0.015 Score=49.88 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=23.5
Q ss_pred cccccccccCCC-C---ceec----CCCcccchHHHHHHHhc--C--------CCCCCCCCcccC
Q 002641 163 DFVCPITTHIFD-D---PVTL----ETGQTYERRAIQEWIER--G--------NSSCPITRQKLS 209 (897)
Q Consensus 163 el~CpIC~~l~~-d---PV~l----~CGHtFCr~CI~~~~~~--~--------~~~CP~Cr~~~~ 209 (897)
+..|+||...+. + |+.. .|++.|=..|+.+|+.. + ...||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999999865 2 4443 69999999999999973 1 125999998875
No 362
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.033 Score=63.00 Aligned_cols=51 Identities=18% Similarity=0.401 Sum_probs=39.0
Q ss_pred CCCcccccccccCCC-----------------CceecCCCcccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641 160 PPKDFVCPITTHIFD-----------------DPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSS 210 (897)
Q Consensus 160 l~~el~CpIC~~l~~-----------------dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~ 210 (897)
....--|+||+.-.. +=+.+||-|.|-+.|+.+|.+.-.-.||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 455667999987542 123459999999999999998544579999998753
No 363
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.71 E-value=1.1 Score=52.05 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=70.1
Q ss_pred ceeEeeecccccE-EEEecCC---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecC--CeEEEEeCCCCc
Q 002641 775 LRKYSPLAFEMVK-VLSNGHD---SSADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSD--GTIKVWTGRGSI 844 (897)
Q Consensus 775 ~~~~~~~s~d~~~-LaSgs~D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~D--gtIrlWd~~~~~ 844 (897)
....-.+++||+. ++..+.+ ..|.++|+. .....+....+.+....|+|| ++++.+.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 4556778899985 5544444 456777775 333344445566677889998 44555444 457777877764
Q ss_pred ceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC--cEEEEeCCCccc
Q 002641 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK--TARVRSNDSFTY 889 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~--tIrlWdi~~~~l 889 (897)
...+..+........|+|||+.|+-.+. .+ .|.+.|+.+|..
T Consensus 269 ---~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 269 ---LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred ---EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3334434333445679999987776663 33 677778887743
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=0.2 Score=61.99 Aligned_cols=97 Identities=19% Similarity=0.292 Sum_probs=70.4
Q ss_pred cccEEEEecCCCCeEEEeCCccee-eccC--CCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCe
Q 002641 784 EMVKVLSNGHDSSADFWNHRELVH-VDSS--ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~~~l~-~l~g--H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V 858 (897)
-+.+++.|+..|.+-..|+..-+. -.++ -.++|++++|+.| .++.|..+|.|.+||...+ +.++.+..|+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCcc
Confidence 356788888888888777763222 1222 3689999999987 8899999999999999987 4677777777766
Q ss_pred EEEE---EccCCCEEEEEeCCCcEEEEeC
Q 002641 859 TGLA---ILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 859 ~sla---fspdg~~L~SgS~D~tIrlWdi 884 (897)
+++- +..++..++++...|. +|..
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6544 3345566888877775 6754
No 365
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.043 Score=58.67 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=38.3
Q ss_pred ccccccc-CCCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641 165 VCPITTH-IFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (897)
Q Consensus 165 ~CpIC~~-l~~dPV~----l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~ 213 (897)
.||+|.. .+..|-+ -+|||+.|.+|....+..|...||.|...+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 4888863 4445532 28999999999999999888899999988765443
No 366
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.66 E-value=0.025 Score=68.88 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=40.8
Q ss_pred ccccccccCCCCceecCCCcccchHHHHHHHhcC-CCCCCCCCcccCCCCC
Q 002641 164 FVCPITTHIFDDPVTLETGQTYERRAIQEWIERG-NSSCPITRQKLSSTKL 213 (897)
Q Consensus 164 l~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~~~~~~~ 213 (897)
+.|+||.+ ..+++++.|||.||+.|+...+... ...||.|+..+....+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 89999999 8889999999999999999988743 3369999877654443
No 367
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.66 E-value=0.25 Score=60.12 Aligned_cols=100 Identities=11% Similarity=0.186 Sum_probs=76.6
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEE
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGL 861 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~sl 861 (897)
++..++.|+.-..+...|+. +..+...-..+.|.=+..+...+++|..-|+|-+-|.++. +.+++|..|++.|+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeee
Confidence 35567777777777778877 3333333334457777777779999999999999999987 6899999999999865
Q ss_pred EEccCCCEEEEEeCC---------CcEEEEeCCCc
Q 002641 862 AILQSGEMLYSGSLD---------KTARVRSNDSF 887 (897)
Q Consensus 862 afspdg~~L~SgS~D---------~tIrlWdi~~~ 887 (897)
.. .|+.|+|+|.. .-|+|||++.-
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhh
Confidence 54 59999999854 45789999864
No 368
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.62 E-value=1 Score=49.89 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=79.5
Q ss_pred eEeeecccccEEEEecCC-CCeEEEeCC-----cceeeccCCCCc----------EEEEEEeCC--EEEEEecC-CeEEE
Q 002641 777 KYSPLAFEMVKVLSNGHD-SSADFWNHR-----ELVHVDSSENGK----------VLSIACFRD--KIFSGHSD-GTIKV 837 (897)
Q Consensus 777 ~~~~~s~d~~~LaSgs~D-gtIklWd~~-----~~l~~l~gH~~~----------V~sV~fspd--~L~Sgs~D-gtIrl 837 (897)
+.+.++.+|.+++++++. |.|.++-+. ........|.+. +.+..|.|+ +++++... -.|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 778888999999988876 788888875 122122335554 889999997 66666543 36789
Q ss_pred EeCCCCcceeEEEee-ccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCc
Q 002641 838 WTGRGSILHLIQQIR-EHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSF 887 (897)
Q Consensus 838 Wd~~~~~~~~i~~l~-gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~~ 887 (897)
|++..+.+....... .-...-.-+.|+|+|++.+..+ .+++|-+|...+.
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 999877533332222 2333567899999999988887 6999999999873
No 369
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.60 E-value=0.056 Score=42.57 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=21.9
Q ss_pred ccccccCCCC--ceec--CCCcccchHHHHHHHhcCCCCCCCCCccc
Q 002641 166 CPITTHIFDD--PVTL--ETGQTYERRAIQEWIERGNSSCPITRQKL 208 (897)
Q Consensus 166 CpIC~~l~~d--PV~l--~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~ 208 (897)
||+|.+-+.. --.. +||+-.|+.|..+..+..+..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7888887721 1112 79999999999988876677999999874
No 370
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.044 Score=60.42 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=38.4
Q ss_pred cccccccccCCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCcccCC
Q 002641 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKLSS 210 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l~CGHt-FCr~CI~~~~~~~~~~CP~Cr~~~~~ 210 (897)
--.|-||+.--+|-+++||.|. .|..|-.... -....||+||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchHh
Confidence 4579999999999999999994 6999987643 334579999998753
No 371
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.04 Score=60.72 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=38.1
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
+.+....|-||.+-..+.+-++|||..| |+.-.. ....||+||+.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 5677788999999999999999999988 765432 3556999998764
No 372
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.43 E-value=0.16 Score=60.08 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCc-------------ceeEEEeeccCCCeEEEEEccCCCEEEEEeCC
Q 002641 812 ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI-------------LHLIQQIREHTKAVTGLAILQSGEMLYSGSLD 876 (897)
Q Consensus 812 H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~-------------~~~i~~l~gH~~~V~slafspdg~~L~SgS~D 876 (897)
.+....|+.|+.+ +++.||.||.+||-.+.+.. +..-+++.||+..|.-+.|+.+...|-|...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3566789999985 99999999999999887542 22236789999999999999999999999999
Q ss_pred CcEEEEeCCCc
Q 002641 877 KTARVRSNDSF 887 (897)
Q Consensus 877 ~tIrlWdi~~~ 887 (897)
|-|.+|-+-.|
T Consensus 93 GlIiVWmlykg 103 (1189)
T KOG2041|consen 93 GLIIVWMLYKG 103 (1189)
T ss_pred ceEEEEeeecc
Confidence 99999987655
No 373
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.43 E-value=0.17 Score=60.88 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=67.9
Q ss_pred CCCeEEEe-CCcceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEE
Q 002641 794 DSSADFWN-HRELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEML 870 (897)
Q Consensus 794 DgtIklWd-~~~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L 870 (897)
.|+|.|+- .+++-+. ....-.+++++|+|. .|++|=.-|.+.+|...+.+ .-.....|..+|.-+.|||+|..+
T Consensus 40 ~GSVtIfadtGEPqr~-Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--~htv~~th~a~i~~l~wS~~G~~l 116 (1416)
T KOG3617|consen 40 GGSVTIFADTGEPQRD-VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--THTVVETHPAPIQGLDWSHDGTVL 116 (1416)
T ss_pred CceEEEEecCCCCCcc-cccceehhhhccChHHHHHhhccccceeEEEecCCce--eeeeccCCCCCceeEEecCCCCeE
Confidence 46777763 3331111 111223567999997 88888888999999998763 444566799999999999999999
Q ss_pred EEEeCCCcEEEEeCCC
Q 002641 871 YSGSLDKTARVRSNDS 886 (897)
Q Consensus 871 ~SgS~D~tIrlWdi~~ 886 (897)
+|+..=|.+.+|....
T Consensus 117 ~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 117 MTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEcCCCceeEEEEeee
Confidence 9999999999998763
No 374
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.24 E-value=0.052 Score=43.74 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCcccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCC
Q 002641 161 PKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLSSTK 212 (897)
Q Consensus 161 ~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~ 212 (897)
..+..|-.|...-...++++|||..|+.|..-+ ....||.|++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 345667788888888999999999999996432 2346999999987654
No 375
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.19 Score=58.82 Aligned_cols=73 Identities=23% Similarity=0.396 Sum_probs=65.5
Q ss_pred CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHHhCCC
Q 002641 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQEQNPG 233 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~~~~~ 233 (897)
++|++|.-|....+|+|||.+ ..|-+..|+-|..++-. ..+.|.-|.+++.+.+ .||-.|++-|..|....+.
T Consensus 850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddV-tpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDV-TPNAELREKINRFYKCKGQ 923 (929)
T ss_pred CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhc-CCCHHHHHHHHHHHhcccc
Confidence 799999999999999999998 68899999999998875 4489999999999999 6999999999999876543
No 376
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.93 E-value=2.5 Score=47.83 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=72.6
Q ss_pred ceeEeeecccccEEEEecC-CCCeEEEeCC--c--c--eeecc-CCCCcEEEEEEeCC---EEEEEecCCeEEEEeCC--
Q 002641 775 LRKYSPLAFEMVKVLSNGH-DSSADFWNHR--E--L--VHVDS-SENGKVLSIACFRD---KIFSGHSDGTIKVWTGR-- 841 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~-DgtIklWd~~--~--~--l~~l~-gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~-- 841 (897)
......+.|++++++.... ...|.+|+++ . + ...+. .....-..+.|+|| ..+.+-.+++|.++++.
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 3445677889888776543 3578888876 2 2 12222 23456789999998 55666778999999998
Q ss_pred CCcceeEEEeecc------CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 002641 842 GSILHLIQQIREH------TKAVTGLAILQSGEMLYSGS-LDKTARVRSND 885 (897)
Q Consensus 842 ~~~~~~i~~l~gH------~~~V~slafspdg~~L~SgS-~D~tIrlWdi~ 885 (897)
++.+..++..... ......++++|||++|+.+. .+.+|-+|++.
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 4433344443321 12578999999999888776 56789999993
No 377
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.83 E-value=0.81 Score=54.99 Aligned_cols=97 Identities=8% Similarity=0.052 Sum_probs=71.4
Q ss_pred cEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeC------CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCC
Q 002641 786 VKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR------DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKA 857 (897)
Q Consensus 786 ~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fsp------d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~ 857 (897)
-.||++...|.|.+||+. ..+.-+..|..+|..++|-+ |.|+.-+...++-+|+..+|. .+.....-...
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEI 157 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcc
Confidence 368889899999999987 55556777899999999975 377777788899999999984 45555544556
Q ss_pred eEEEEEccC-CCEEEEEeCCCcEEEEeC
Q 002641 858 VTGLAILQS-GEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 858 V~slafspd-g~~L~SgS~D~tIrlWdi 884 (897)
..|+.+.|- .+++..-+..|.+-+.+.
T Consensus 158 Ls~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 158 LSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeeeeeCCCCcceEEEEccCceEEEEec
Confidence 678888883 455555555566655554
No 378
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=92.82 E-value=0.12 Score=41.24 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=32.4
Q ss_pred ccccccc--CCCCceecCCC-----cccchHHHHHHHhcC-CCCCCCCC
Q 002641 165 VCPITTH--IFDDPVTLETG-----QTYERRAIQEWIERG-NSSCPITR 205 (897)
Q Consensus 165 ~CpIC~~--l~~dPV~l~CG-----HtFCr~CI~~~~~~~-~~~CP~Cr 205 (897)
.|.||++ --.+|.+.||. |.+=+.|+.+|+... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889987 44577778885 778899999999854 55799995
No 379
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.52 Score=53.39 Aligned_cols=107 Identities=12% Similarity=0.037 Sum_probs=80.0
Q ss_pred EEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeC--CEEEEEecCCeEEEEeCCCC-c---cee---------E
Q 002641 788 VLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR--DKIFSGHSDGTIKVWTGRGS-I---LHL---------I 848 (897)
Q Consensus 788 LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fsp--d~L~Sgs~DgtIrlWd~~~~-~---~~~---------i 848 (897)
-++.-.++.|.++|-. +....-.-|..+|.++.+++ |...|....|.|.-|..... + ... +
T Consensus 115 AVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 115 AVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred EeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 3445567999999964 55555566999999999998 58888888899999998841 0 001 1
Q ss_pred EEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceeeec
Q 002641 849 QQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 849 ~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l~~ 894 (897)
..+.-.+...+++.|+|+|..+.+-+.|.+||+++.++| ..+.+.+
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 112223446789999999999999999999999999999 5565544
No 380
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.65 E-value=0.1 Score=44.96 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=32.5
Q ss_pred cccccccCCC----Cceec-CCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 165 VCPITTHIFD----DPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 165 ~CpIC~~l~~----dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
.||-|..-|. =||.. -|.|.|-..||.+|+.. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 4555555332 14444 79999999999999996 458999999864
No 381
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.082 Score=59.06 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=38.4
Q ss_pred CCcccccccccCCC---CceecCCCcccchHHHHHHHhcCC--CCCCCCCcc
Q 002641 161 PKDFVCPITTHIFD---DPVTLETGQTYERRAIQEWIERGN--SSCPITRQK 207 (897)
Q Consensus 161 ~~el~CpIC~~l~~---dPV~l~CGHtFCr~CI~~~~~~~~--~~CP~Cr~~ 207 (897)
..-|.|||-.+--. -|+.+.|||.-|+..+.+..+.|. +.||.|-..
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 44579999777665 489999999999999999888776 789999544
No 382
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.49 E-value=0.092 Score=63.30 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=89.7
Q ss_pred eeeecccccccceeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecC-CeEEE
Q 002641 764 HMKDIMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSD-GTIKV 837 (897)
Q Consensus 764 ~i~~~l~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~D-gtIrl 837 (897)
+-|.+...+....++..|+.+...|+.|+..|.|+++++. .......+|+++|+-|.=+.| +|.+.+.. .-.-+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 3466666677888899999999999999999999999987 667777899999999977765 44444444 36789
Q ss_pred EeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641 838 WTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAI 891 (897)
Q Consensus 838 Wd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~ 891 (897)
|+.... +...+.|.+- .++.|+-....-+.|.......+||+.|+ .+++
T Consensus 1172 W~~~s~-~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1172 WDASST-GGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred hccccc-cCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 999863 2456666543 57788755433333443456789999998 5555
No 383
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.087 Score=54.84 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=33.3
Q ss_pred CCCCcccccccccCCCCceecCCCcccchHHHHHHHh
Q 002641 159 TPPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE 195 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~ 195 (897)
.+.+.-.|.+|++-++|||+++-||.|||.||.+++-
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 5666677899999999999999999999999999874
No 384
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.36 E-value=1.1 Score=51.03 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=66.5
Q ss_pred ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCC-CeEEE
Q 002641 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTK-AVTGL 861 (897)
Q Consensus 785 ~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~-~V~sl 861 (897)
+..+..++.++.+..||.. +.+..... ..........+.++.++.||.+..+|..+++ .+........ .+.+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~--~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGS--ELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCc--EEEccccccCCccccC
Confidence 4567778889999999986 33333221 1122333455688888999999999999884 4443322111 22222
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641 862 AILQSGEMLYSGSLDKTARVRSNDSF-TYAI 891 (897)
Q Consensus 862 afspdg~~L~SgS~D~tIrlWdi~~~-~l~~ 891 (897)
.. .|..++.++.||.+.+||..+| .+..
T Consensus 317 ~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 317 AV--VGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 22 3778999999999999999988 4433
No 385
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.23 Score=55.43 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=77.2
Q ss_pred ccccccceeEeeeccccc-EEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCC
Q 002641 769 MKGLRELRKYSPLAFEMV-KVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 769 l~~~~~~~~~~~~s~d~~-~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~ 842 (897)
+-++.....-..+++... .+..++.+.+|+|.|+. .++..+..| ..+|+.+|..| .++.|-..|.|.+||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 334445555666777555 78899999999999997 566666677 88999999975 899999999999999996
Q ss_pred CcceeEEEeec--cCCCeEEEE------EccCCCEEEEEeCCCcEEEEeCC
Q 002641 843 SILHLIQQIRE--HTKAVTGLA------ILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 843 ~~~~~i~~l~g--H~~~V~sla------fspdg~~L~SgS~D~tIrlWdi~ 885 (897)
.+ ..+..+.+ ...+|..++ .++.|..++..+.+ ...|++.
T Consensus 268 ~~-~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~ 315 (463)
T KOG1645|consen 268 PE-GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV 315 (463)
T ss_pred CC-chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence 64 22333333 223444433 23445666665554 3466654
No 386
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.03 E-value=9.5 Score=45.60 Aligned_cols=188 Identities=11% Similarity=0.207 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhcc---CChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcC----chHHHHHHHHhCCCh
Q 002641 312 PAVINGFVEILFNS---VDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPST 384 (897)
Q Consensus 312 ~~a~~~~ke~L~~s---l~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~----~~ea~~LL~~L~~~~ 384 (897)
..+...++..|... -++.|.+.+...+..+....+...+.+. ...-...++..+... ...|..+|..|...+
T Consensus 72 ~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~-~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~ 150 (503)
T PF10508_consen 72 DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV-DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP 150 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc-CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence 34456666666663 3556677766666666555554444444 334466677777665 566666888888777
Q ss_pred hhHHHH---hhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHH
Q 002641 385 RTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE 461 (897)
Q Consensus 385 ~~i~~~---~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~ 461 (897)
..+..+ +.+..|..++.+.++- .. --.+.++-.+...+ ...+..++..|.++.+++.++++|+=-
T Consensus 151 ~~~~~l~~~~~~~~L~~l~~~~~~~-vR------~Rv~el~v~i~~~S-----~~~~~~~~~sgll~~ll~eL~~dDiLv 218 (503)
T PF10508_consen 151 EGLEQLFDSNLLSKLKSLMSQSSDI-VR------CRVYELLVEIASHS-----PEAAEAVVNSGLLDLLLKELDSDDILV 218 (503)
T ss_pred hhHHHHhCcchHHHHHHHHhccCHH-HH------HHHHHHHHHHHhcC-----HHHHHHHHhccHHHHHHHHhcCccHHH
Confidence 766543 3356677777663331 11 11333444443333 346677778899999999999999999
Q ss_pred HHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHH
Q 002641 462 RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSE 513 (897)
Q Consensus 462 ~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~e 513 (897)
+.+++++|.- +.....+..||.+..-+..+..++.......|...+.+...
T Consensus 219 qlnalell~~-La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 219 QLNALELLSE-LAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred HHHHHHHHHH-HHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 9999988863 33388889999999999999999887544445555444433
No 387
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.84 E-value=1 Score=51.27 Aligned_cols=96 Identities=8% Similarity=0.133 Sum_probs=64.5
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCC-CCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSE-NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH-~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s 860 (897)
++..+..++.||.+..+|.. +.+.....- ...+.+.....+.++.++.||.+.+||..++ +.+..+..+...+.+
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG--~~~~~~~~~~~~~~~ 355 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG--SFVARLKTDGSGIAS 355 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC--CEEEEEEcCCCcccc
Confidence 46677778889999999986 333333211 1223333445568999999999999999988 466777766654433
Q ss_pred EEEccCCCEEEEEeCCCcEEEE
Q 002641 861 LAILQSGEMLYSGSLDKTARVR 882 (897)
Q Consensus 861 lafspdg~~L~SgS~D~tIrlW 882 (897)
--... ++.|+.++.||.|..|
T Consensus 356 sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 356 PPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEE-CCEEEEEeCCceEEEe
Confidence 22223 3468899999988765
No 388
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.81 E-value=2.3 Score=48.16 Aligned_cols=89 Identities=7% Similarity=-0.058 Sum_probs=63.4
Q ss_pred CCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEE-EEe---------cCCeEEEEeCCCCcceeEEEeec----c--
Q 002641 795 SSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIF-SGH---------SDGTIKVWTGRGSILHLIQQIRE----H-- 854 (897)
Q Consensus 795 gtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~-Sgs---------~DgtIrlWd~~~~~~~~i~~l~g----H-- 854 (897)
++|.+.|.. +.+.++..-..+-. + ++|| .++ +.+ .+..|.+||..+.+ .+..+.- +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhh
Confidence 889999986 66666654433322 4 8887 444 444 58999999999984 5555542 1
Q ss_pred -CCCeEEEEEccCCCEEEEEe-C-CCcEEEEeCCCc
Q 002641 855 -TKAVTGLAILQSGEMLYSGS-L-DKTARVRSNDSF 887 (897)
Q Consensus 855 -~~~V~slafspdg~~L~SgS-~-D~tIrlWdi~~~ 887 (897)
......++++|||++++... . +..+-+.|+.++
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 22345789999999888665 3 789999999988
No 389
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.66 E-value=3 Score=47.30 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=71.0
Q ss_pred cccEEEEecCCCCeEEEeCC-------cceeeccC-------CCCcEEEEEEeCC--EEEEEe----------cCCeEEE
Q 002641 784 EMVKVLSNGHDSSADFWNHR-------ELVHVDSS-------ENGKVLSIACFRD--KIFSGH----------SDGTIKV 837 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~-------~~l~~l~g-------H~~~V~sV~fspd--~L~Sgs----------~DgtIrl 837 (897)
+|+++..... |+|.+-|+. .....+.. ..+...-++++|+ +++... ..+.|-+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 6776665555 999999953 22222221 2334445899986 444421 1257999
Q ss_pred EeCCCCcceeEEEeeccCCCeEEEEEccCCC-EEEEEe-CCCcEEEEeCCCc-cceee
Q 002641 838 WTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGS-LDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 838 Wd~~~~~~~~i~~l~gH~~~V~slafspdg~-~L~SgS-~D~tIrlWdi~~~-~l~~l 892 (897)
+|..++ +.+..+.. ...++.++|+|||+ +|+... .+++|.+.|+.++ .+.++
T Consensus 284 iD~~t~--kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 284 VDAKTG--KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCC--eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999988 35555542 34789999999999 888776 6889999999998 55554
No 390
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.037 Score=58.86 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=34.2
Q ss_pred cccccccccCCCCceecCCCcc-cchHHHHHHHhcCCCCCCCCCccc
Q 002641 163 DFVCPITTHIFDDPVTLETGQT-YERRAIQEWIERGNSSCPITRQKL 208 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l~CGHt-FCr~CI~~~~~~~~~~CP~Cr~~~ 208 (897)
+..|.||++.-.|=|.++|||. -|..|-.+. ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHH
Confidence 7899999999999999999994 588885432 2799999875
No 391
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=0.24 Score=55.94 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred ecccccEEEEecC-CCCeEEEeCC--cceeeccCC--CCcEEEEEEeCC----EEEEE-ecCCeEEEEeCCCCcceeEEE
Q 002641 781 LAFEMVKVLSNGH-DSSADFWNHR--ELVHVDSSE--NGKVLSIACFRD----KIFSG-HSDGTIKVWTGRGSILHLIQQ 850 (897)
Q Consensus 781 ~s~d~~~LaSgs~-DgtIklWd~~--~~l~~l~gH--~~~V~sV~fspd----~L~Sg-s~DgtIrlWd~~~~~~~~i~~ 850 (897)
.+.++..+.|++. |+.+|++|+. ..+..++-- .+.+..+ .++. .++.+ -.+|.|.++|-.....+....
T Consensus 61 ~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f 139 (558)
T KOG0882|consen 61 VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF 139 (558)
T ss_pred ccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCcccee
Confidence 3457777888777 8888888876 554433322 2222222 2332 34333 345888888887653233333
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
-+-|..+|.++.++|.+..++|....|.|.-|....
T Consensus 140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred cccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 344999999999999999999999999999999874
No 392
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.1 Score=60.88 Aligned_cols=62 Identities=29% Similarity=0.483 Sum_probs=41.6
Q ss_pred CCCCcccccccccCC----CCceecCCCcccchHHHHHHHhcCCCCCCCCCcc-----cCCCCCCcccHHHHHHHH
Q 002641 159 TPPKDFVCPITTHIF----DDPVTLETGQTYERRAIQEWIERGNSSCPITRQK-----LSSTKLPKTNYVLKRLIA 225 (897)
Q Consensus 159 ~l~~el~CpIC~~l~----~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~-----~~~~~~~~pN~~L~~li~ 225 (897)
...+-+.|+||+..| ..||.+.|||+-|+.|++...+ ..|| |... ...+..+ .|+++-+.+.
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~De~~~~~~~~e~p-~n~alL~~~~ 77 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRDEDSSLMQLKEEP-RNYALLRREH 77 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCccccchhcChhhcc-hhHHHHHhhc
Confidence 345568899997777 4799999999999999987544 3677 3321 1233342 5666655443
No 393
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.82 E-value=2.2 Score=44.67 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=67.0
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEe-eccC---CC
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI-REHT---KA 857 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l-~gH~---~~ 857 (897)
++.+++.++.++.+..||.. +.+..+..............+.++.++.|+.+..+|..+++ .+... .... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcc--eeeeecccccccccc
Confidence 56677777899999999974 44444443211111134455678888899999999999984 45552 2221 11
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 858 VTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 858 V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
........++..++.+..++.|..+|+++|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 222233334888999999999999999998
No 394
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=1.4 Score=53.76 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=78.2
Q ss_pred EeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCc-EEEEEEeCC--EEEEEecCC-----eEEEEeCCCC---c-
Q 002641 778 YSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGK-VLSIACFRD--KIFSGHSDG-----TIKVWTGRGS---I- 844 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~-V~sV~fspd--~L~Sgs~Dg-----tIrlWd~~~~---~- 844 (897)
..-+++.+..++-|+.||.|.+.+-. +.++-++.+... |..+-.-.+ .|+|.+.|+ .+++||+... .
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 44456678899999999999988877 666889988776 555544333 888888775 4899999743 1
Q ss_pred ceeEE--Eeec-----cCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 845 LHLIQ--QIRE-----HTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 845 ~~~i~--~l~g-----H~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
+.++. ...+ ...++++++++.+-..+|.|-.||.|..+.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 34442 1222 244688999999989999999999998763
No 395
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.72 E-value=3.9 Score=47.68 Aligned_cols=112 Identities=10% Similarity=0.027 Sum_probs=65.5
Q ss_pred eeEeeecccccEEE-EecCCC--CeEEEeCC-cceeeccCCCCcEEEEEEeCC---EEEEEecCC--eEEEEeCCCCcce
Q 002641 776 RKYSPLAFEMVKVL-SNGHDS--SADFWNHR-ELVHVDSSENGKVLSIACFRD---KIFSGHSDG--TIKVWTGRGSILH 846 (897)
Q Consensus 776 ~~~~~~s~d~~~La-Sgs~Dg--tIklWd~~-~~l~~l~gH~~~V~sV~fspd---~L~Sgs~Dg--tIrlWd~~~~~~~ 846 (897)
.....+++||+.++ +.+.++ .|.++|+. .....+..+.+......|+|| +.++....| .|.++|+.++..+
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 34456788998665 344444 56666765 444555555544445689997 344433344 5777788776421
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCC---------CcEEEEeCCCccceee
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLD---------KTARVRSNDSFTYAIF 892 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D---------~tIrlWdi~~~~l~~l 892 (897)
.+ ++.+. . ...|+|||+.|+-.+.. ..|.+.|+.++..+.+
T Consensus 315 rl-t~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L 364 (419)
T PRK04043 315 QV-VFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL 364 (419)
T ss_pred eC-ccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence 11 12222 1 24899999988776643 2567778877744443
No 396
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=90.71 E-value=2.2 Score=40.03 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=44.5
Q ss_pred EEEEEEeC------CEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 816 VLSIACFR------DKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 816 V~sV~fsp------d~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
|+++++.. +.|+.||.|..||+|+-.. .+..+..+ ..|+++.-... ..|+-|..+|||-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence 66777653 2899999999999999654 46666644 55777776654 5677777777776544
No 397
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.52 E-value=0.1 Score=63.13 Aligned_cols=47 Identities=23% Similarity=0.641 Sum_probs=36.7
Q ss_pred cccccccccCCC--C---cee--cCCCcccchHHHHHHHhc-CCCCCCCCCcccC
Q 002641 163 DFVCPITTHIFD--D---PVT--LETGQTYERRAIQEWIER-GNSSCPITRQKLS 209 (897)
Q Consensus 163 el~CpIC~~l~~--d---PV~--l~CGHtFCr~CI~~~~~~-~~~~CP~Cr~~~~ 209 (897)
.-.|+||..++. | |-. ..|.|-|--.|+.+|++. ++.+||.||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 446999999886 2 332 268899999999999995 4668999997664
No 398
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.49 E-value=4.8 Score=46.16 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=78.7
Q ss_pred cccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCC--EEEEEecCC-eEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRD--KIFSGHSDG-TIKVWTGRGSILHLIQQIREHTKAVTG 860 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd--~L~Sgs~Dg-tIrlWd~~~~~~~~i~~l~gH~~~V~s 860 (897)
+|.+++..|.. .+-+.+...--..-.+|.+.|.-..+..+ -++-|-.|| .+-++|..+++ +..+.+.-+.|.+
T Consensus 331 ~Gd~ia~VSRG-kaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRG-KAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecC-cEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---EEEeeCCccceEE
Confidence 67787777654 33344433112222478888888888754 788899999 89999999984 5677778889999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCcccee
Q 002641 861 LAILQSGEMLYSGSLDKTARVRSNDSFTYAI 891 (897)
Q Consensus 861 lafspdg~~L~SgS~D~tIrlWdi~~~~l~~ 891 (897)
++.+|+|+.++.+-....+.+.|+.+|..+.
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~ 437 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL 437 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE
Confidence 9999999999999888889999999985443
No 399
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.45 E-value=0.16 Score=54.98 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=37.7
Q ss_pred CCcccccccccCCC--Ccee--cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCC
Q 002641 161 PKDFVCPITTHIFD--DPVT--LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKL 213 (897)
Q Consensus 161 ~~el~CpIC~~l~~--dPV~--l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~ 213 (897)
++++ ||+|.+-|. |--- -+||...|+.|.....+.-+..||.||.......+
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 3444 999998774 2211 37999999999876555446689999998876654
No 400
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.34 E-value=0.35 Score=58.63 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=67.9
Q ss_pred cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeC-CC-cE
Q 002641 804 ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSL-DK-TA 879 (897)
Q Consensus 804 ~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~-D~-tI 879 (897)
+..++|..|+...+|++|+.+ .|+.|+..|.|+++++.+| .......+|..+|+-+.=+-||..+++.|. .. -.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchH
Confidence 567788899999999999985 9999999999999999998 356778899999999998889976665553 33 45
Q ss_pred EEEeCCC
Q 002641 880 RVRSNDS 886 (897)
Q Consensus 880 rlWdi~~ 886 (897)
-+|++.+
T Consensus 1170 aLW~~~s 1176 (1516)
T KOG1832|consen 1170 ALWDASS 1176 (1516)
T ss_pred HHhcccc
Confidence 6899876
No 401
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=7.7 Score=45.80 Aligned_cols=217 Identities=15% Similarity=0.224 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhc---cCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCchHHH----HHHHHh-CC--
Q 002641 313 AVINGFVEILFN---SVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAV----VLIDLL-RP-- 382 (897)
Q Consensus 313 ~a~~~~ke~L~~---sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~~ea~----~LL~~L-~~-- 382 (897)
+.+......|.. +.+.+|+..+.-.+..+-....+.++.+-+. +....++.+|.......+ ..+-.+ ..
T Consensus 233 ~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~-gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA-GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-cchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 344444444444 6678888888888877755544444443322 334555555544311111 011111 11
Q ss_pred -ChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHH
Q 002641 383 -STRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE 461 (897)
Q Consensus 383 -~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~ 461 (897)
-.+.++..+.+|.|...|.+..+. +=+..|.-.|..|-.|- ..++-+++..|.+|.|++.+++++-.-
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~------~ikkEAcW~iSNItAG~-----~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKE------SIKKEACWTISNITAGN-----QEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcch------hHHHHHHHHHHHhhcCC-----HHHHHHHHHcccHHHHHHHHhccchHH
Confidence 123345567777777777643222 12345666677776443 468889999999999999999999888
Q ss_pred HHHHHHHHhhhccccCcch--hhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhchhhhh---HHHHHHhhccCcc
Q 002641 462 RIAAVGILLRCMQEDGKCR--NSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTFN---EQILHIIKDEGTY 536 (897)
Q Consensus 462 ~~~~~~il~~c~~~~~~cr--~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~~~---~~~l~~i~~~g~~ 536 (897)
|..|+=.+ ++....|+-+ .|+.+..-+.||.++|.....+.-..++.-|.-+++....-.. ..+=..|++.|++
T Consensus 381 rKEAawaI-sN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl 459 (514)
T KOG0166|consen 381 RKEAAWAI-SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL 459 (514)
T ss_pred HHHHHHHH-HhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh
Confidence 88765444 3555555544 7999999999999999665555556678888888877643332 4455677788887
Q ss_pred chhhHH
Q 002641 537 SSMHTL 542 (897)
Q Consensus 537 ~~m~~l 542 (897)
.-|..|
T Consensus 460 dkiE~L 465 (514)
T KOG0166|consen 460 DKIENL 465 (514)
T ss_pred hHHHHh
Confidence 766544
No 402
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.22 E-value=0.25 Score=47.09 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=43.0
Q ss_pred CcccccccccCCCCceec----CCCcccchHHHHHHHhcC--CCCCCCCCcccCCCC
Q 002641 162 KDFVCPITTHIFDDPVTL----ETGQTYERRAIQEWIERG--NSSCPITRQKLSSTK 212 (897)
Q Consensus 162 ~el~CpIC~~l~~dPV~l----~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~~~~ 212 (897)
.-+.|.||.+...|+.-+ .||-+-|..|-...|+.. .+.||+|+..+....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 467899999999998876 699999999999988743 457999999886554
No 403
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=90.14 E-value=24 Score=38.22 Aligned_cols=184 Identities=11% Similarity=0.191 Sum_probs=119.8
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcC----chHHHHHHHHhCCChhhHHH
Q 002641 314 VINGFVEILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIE 389 (897)
Q Consensus 314 a~~~~ke~L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~----~~ea~~LL~~L~~~~~~i~~ 389 (897)
-.+.+...|..+-++-+.+.+...+... .......+.|.+. +.+.-|..++... ..+|-..|..|+...+|...
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 3466667777777776666666666554 3334445555543 3467777888665 44566689999999988887
Q ss_pred HhhHHHHHHHHHh-hcchh-hhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHH
Q 002641 390 MDMMESLMTVIKK-KEEDF-LKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (897)
Q Consensus 390 ~~~~~~Ll~~l~~-~~~~~-~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~ 467 (897)
+.. ++-++++. .+.++ +. =+-|++-+|-.+=...|+ ..++ .+.++.++..+..|+..-|+.+..
T Consensus 91 Ik~--~i~~Vc~~~~s~~lns~----~Q~agLrlL~nLtv~~~~-------~~~l-~~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 91 IKM--YIPQVCEETVSSPLNSE----VQLAGLRLLTNLTVTNDY-------HHML-ANYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred HHH--HHHHHHHHHhcCCCCCH----HHHHHHHHHHccCCCcch-------hhhH-HhhHHHHHHHHHcCChHHHHHHHH
Confidence 764 44444443 11111 01 124677777666433321 2333 347999999999999999988766
Q ss_pred HHhhhccccCcchhhHhhhcchhhHHHHHhhcCcch-hHHHHHHHHHH
Q 002641 468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGE-RFEIVCFLSEL 514 (897)
Q Consensus 468 il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~l~el 514 (897)
++.++..+..-...+..+-.++.|+.||.+...++ -..+|.||--|
T Consensus 157 -~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 157 -VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred -HHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 56789999998777777788999999999864444 55566665544
No 404
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=89.83 E-value=0.33 Score=38.79 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=22.6
Q ss_pred cccccccccCCCCceec-CCCcccc--hHHHHHHH-hcCCCCCCCCCcc
Q 002641 163 DFVCPITTHIFDDPVTL-ETGQTYE--RRAIQEWI-ERGNSSCPITRQK 207 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l-~CGHtFC--r~CI~~~~-~~~~~~CP~Cr~~ 207 (897)
.+.|||+...+.-||.. .|.|.-| ..-..... ..+...||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999986 9999754 32222222 2344579999864
No 405
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=1.1 Score=54.14 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=67.0
Q ss_pred cccEEEEecCCCCeEEEeCCcceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEE
Q 002641 784 EMVKVLSNGHDSSADFWNHRELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAI 863 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slaf 863 (897)
.++.++-|..+|.|.+.+......+...|... .-...+++|||.||+|-|-.+.+.+ ..+++. -..++.++++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~--~~~~~d-f~rpiksial 120 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD--EITQYD-FKRPIKSIAL 120 (846)
T ss_pred hcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCCc--cceeEe-cCCcceeEEe
Confidence 47789999999999999987322555555443 2223499999999999999988774 233333 3456889999
Q ss_pred ccC-----CCEEEEEeCCCcEEEEe
Q 002641 864 LQS-----GEMLYSGSLDKTARVRS 883 (897)
Q Consensus 864 spd-----g~~L~SgS~D~tIrlWd 883 (897)
+|+ .+.+++||.-| +.++.
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEeh
Confidence 998 47899999887 66654
No 406
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=89.81 E-value=0.11 Score=62.12 Aligned_cols=67 Identities=16% Similarity=0.361 Sum_probs=51.9
Q ss_pred CCCcccccccccCCCCceecCCCcccchHHHHHHHhc--CCCCCCCCCcccCCCCCCcccHHHHHHHHHH
Q 002641 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER--GNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227 (897)
Q Consensus 160 l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~--~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~ 227 (897)
...++.||||.....+|+.+.|-|.||+.|+...+.. +...||+|+..+..... +--..-.++++++
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~-~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL-RESPRFSQLSKES 86 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc-cccchHHHHHHHh
Confidence 4568899999999999999999999999999875543 34579999987776666 3444455555543
No 407
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.71 E-value=1.8 Score=53.84 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=70.1
Q ss_pred EEEEecCCCCeEEEeCC--c-ceeeccCC----CCcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCe
Q 002641 787 KVLSNGHDSSADFWNHR--E-LVHVDSSE----NGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAV 858 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~--~-~l~~l~gH----~~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V 858 (897)
....|=.+..+..||.+ . .+..-++| +....|++-+.+ +|+.||.+|-||+||--+. +.-..|.|-..+|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~--~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK--RAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccch--hhhhcCCCCCCCe
Confidence 45666678888899987 1 11111232 345677777776 9999999999999995432 4566788888999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 859 TGLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 859 ~slafspdg~~L~SgS~D~tIrlWdi 884 (897)
..|..+.||++++..+ +..+.+++.
T Consensus 622 ~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEee-cceEEEEEE
Confidence 9999999999887666 556777775
No 408
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=89.58 E-value=2.8 Score=46.31 Aligned_cols=107 Identities=17% Similarity=0.314 Sum_probs=77.9
Q ss_pred hCCChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchH
Q 002641 380 LRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWA 459 (897)
Q Consensus 380 L~~~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~ 459 (897)
=.|.=+.++.-+++|-+++.+.+-.-++.++ .||-+|-...-+..+ --+-+|-.|++|.++.+|-+++.
T Consensus 103 ~~PPIq~VIdaGvVpRfvefm~~~q~~mlqf-----EAaWalTNiaSGtt~------QTkvVvd~~AVPlfiqlL~s~~~ 171 (526)
T COG5064 103 TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQF-----EAAWALTNIASGTTQ------QTKVVVDAGAVPLFIQLLSSTED 171 (526)
T ss_pred cCCCchhHHhccccHHHHHHHHhcchhHHHH-----HHHHHHhhhccCccc------ceEEEEeCCchHHHHHHHcCchH
Confidence 3566788999999999999997643332222 456555443333332 12345778999999999999988
Q ss_pred HHHHHHHHHHhhhccccC-cchhhHhhhcchhhHHHHHhh
Q 002641 460 EERIAAVGILLRCMQEDG-KCRNSIADKAELAPVMESFMA 498 (897)
Q Consensus 460 ~~~~~~~~il~~c~~~~~-~cr~~~~~~~~~~~~~~ll~~ 498 (897)
+.|-.++ --|.+++-|. .||.|+.+...++|++++|.+
T Consensus 172 ~V~eQav-WALGNiAGDS~~~RD~vL~~galeplL~ll~s 210 (526)
T COG5064 172 DVREQAV-WALGNIAGDSEGCRDYVLQCGALEPLLGLLLS 210 (526)
T ss_pred HHHHHHH-HHhccccCCchhHHHHHHhcCchHHHHHHHHh
Confidence 8887753 3467777665 599999999999999999985
No 409
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=89.27 E-value=2.8 Score=53.59 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=70.8
Q ss_pred eeEeeecccccEEEEecCCCCeEEE----eCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCC----CCc
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFW----NHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGR----GSI 844 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklW----d~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~----~~~ 844 (897)
+....|-.+...++.+..+|-|.+. |.. ..+.....-.+.|.+.+|||| +++....+|++-+-+-. ...
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~ 157 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEV 157 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEe
Confidence 3344455567777788888999888 555 334433334789999999998 66666667776554321 100
Q ss_pred -----------------ceeEEEeec------------------------cCCCeEEEEEccCCCEEEEEeC----C--C
Q 002641 845 -----------------LHLIQQIRE------------------------HTKAVTGLAILQSGEMLYSGSL----D--K 877 (897)
Q Consensus 845 -----------------~~~i~~l~g------------------------H~~~V~slafspdg~~L~SgS~----D--~ 877 (897)
++--..|+| +...-..++|-.||.+++..+. + +
T Consensus 158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R 237 (928)
T PF04762_consen 158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR 237 (928)
T ss_pred ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence 011112222 1123357889999999998885 2 5
Q ss_pred cEEEEeCCCccc
Q 002641 878 TARVRSNDSFTY 889 (897)
Q Consensus 878 tIrlWdi~~~~l 889 (897)
.+|||+-. |.+
T Consensus 238 ~iRVy~Re-G~L 248 (928)
T PF04762_consen 238 VIRVYSRE-GEL 248 (928)
T ss_pred EEEEECCC-ceE
Confidence 89999944 643
No 410
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.21 E-value=0.26 Score=51.62 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=43.0
Q ss_pred CCCcccccccccCCCCcee----cCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCC
Q 002641 160 PPKDFVCPITTHIFDDPVT----LETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLP 214 (897)
Q Consensus 160 l~~el~CpIC~~l~~dPV~----l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~ 214 (897)
-...|.|||.+-.|..-.. -+|||.|....+.+.-. ..|++|+..+...+.+
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVI 163 (293)
T ss_pred ccceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeE
Confidence 3568999999999988654 49999999999988753 4899999999877754
No 411
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.99 E-value=0.17 Score=43.37 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=32.1
Q ss_pred cccccccCCCC-ceec-CCCcccchHHHHHHHhcC--CCCCCCCCcccC
Q 002641 165 VCPITTHIFDD-PVTL-ETGQTYERRAIQEWIERG--NSSCPITRQKLS 209 (897)
Q Consensus 165 ~CpIC~~l~~d-PV~l-~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~~~ 209 (897)
.||-|.--=.| |.++ -|-|.|-..||.+|+... ...||.||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 44444433333 5555 899999999999999843 347999999764
No 412
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.96 E-value=0.35 Score=53.26 Aligned_cols=63 Identities=11% Similarity=0.251 Sum_probs=49.4
Q ss_pred CCCCcccccccccCCCCceec-CCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHHHH
Q 002641 159 TPPKDFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASWQE 229 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~~~ 229 (897)
...+-+.||||.+.+.-|+.= .=||.-|..|-.+. ...||.|+.++. .+ .++++..+++....
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g--~~--R~~amEkV~e~~~v 107 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIG--NI--RCRAMEKVAEAVLV 107 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCccccccc--cH--HHHHHHHHHHhcee
Confidence 455678899999999999754 66999999997542 347999999887 33 68888888877654
No 413
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=88.95 E-value=7.2 Score=43.46 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=77.4
Q ss_pred cceeEeeecccccEEEEecCC---CCeEEEeCC------cceeeccCCCCcEEEEEEeCC--EEEEEec-CCeEEEEeCC
Q 002641 774 ELRKYSPLAFEMVKVLSNGHD---SSADFWNHR------ELVHVDSSENGKVLSIACFRD--KIFSGHS-DGTIKVWTGR 841 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~D---gtIklWd~~------~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-DgtIrlWd~~ 841 (897)
....++.++++.+.|.++..+ |.|--|.++ ..+.....-..+-+.|+++++ +++++.. -|.|.++-++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 445667777888777666544 666666554 122222222334488999986 6666654 5899999997
Q ss_pred C-CcceeEEEeeccCCC----------eEEEEEccCCCEEEEEe--CCCcEEEEeCCCcccee
Q 002641 842 G-SILHLIQQIREHTKA----------VTGLAILQSGEMLYSGS--LDKTARVRSNDSFTYAI 891 (897)
Q Consensus 842 ~-~~~~~i~~l~gH~~~----------V~slafspdg~~L~SgS--~D~tIrlWdi~~~~l~~ 891 (897)
. +.+........|.+. +.+..|.|+|+++++.. .| .|.+|++..|.+..
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~ 181 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTP 181 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCcccc
Confidence 5 443333334446665 89999999999999886 45 58899999875443
No 414
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.57 E-value=1.2 Score=35.09 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 855 TKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 855 ~~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
...|.+++|+|....|+.|+.||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3469999999999999999999999999983
No 415
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.71 E-value=11 Score=40.00 Aligned_cols=115 Identities=14% Similarity=-0.025 Sum_probs=71.9
Q ss_pred ceeEeeecccccEEEEecCC--------CCeEEEeCCcceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCC
Q 002641 775 LRKYSPLAFEMVKVLSNGHD--------SSADFWNHRELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGS 843 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~D--------gtIklWd~~~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~ 843 (897)
..+-..+.++|+..++.+.. |.+..++...........-.....++|+|| ++++-+..+.|..+++...
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence 34445667788877765544 345555555223333333456789999997 4557778899999998643
Q ss_pred c--ceeEEEe---eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCccc
Q 002641 844 I--LHLIQQI---REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFTY 889 (897)
Q Consensus 844 ~--~~~i~~l---~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l 889 (897)
. ......+ .+-.+..-.+++..+|++.++....+.|.++|..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~ 217 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLL 217 (246)
T ss_dssp TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEE
T ss_pred ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEE
Confidence 2 1112223 22233477899999999888888889999999874333
No 416
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.38 E-value=24 Score=42.27 Aligned_cols=118 Identities=8% Similarity=0.162 Sum_probs=90.7
Q ss_pred HHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHH
Q 002641 388 IEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVG 467 (897)
Q Consensus 388 ~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~ 467 (897)
...++++.++..|..++.. =..+|.-+|..+.... .+...++..+.+..|...+...+...|..+-+
T Consensus 116 ~~~~l~~~i~~~L~~~d~~-------Va~~A~~~L~~l~~~~------~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~e 182 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLS-------VAKAAIKALKKLASHP------EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYE 182 (503)
T ss_pred cCccHHHHHHHHHcCCcHH-------HHHHHHHHHHHHhCCc------hhHHHHhCcchHHHHHHHHhccCHHHHHHHHH
Confidence 3356777788888665544 1234555666665322 35667888888999999998878888999989
Q ss_pred HHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhc
Q 002641 468 ILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN 518 (897)
Q Consensus 468 il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~ 518 (897)
++..-.........++.+..-+..++..|.+.+-=.+.+|++.|.+|...+
T Consensus 183 l~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 988888888888999999888888888888866667999999999998844
No 417
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.18 E-value=1.1 Score=55.92 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=58.3
Q ss_pred CcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc-cceee
Q 002641 814 GKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIF 892 (897)
Q Consensus 814 ~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~-~l~~l 892 (897)
..|.+++.-...++.|++.|.|-..|..+.- .+...-..-.++|++++|+.+|..+..|-.+|.|.+||+..+ .++.+
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL-~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNL-GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhccc-chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 3455555545578888888999888887652 222222224568999999999999999999999999999997 55555
Q ss_pred e
Q 002641 893 I 893 (897)
Q Consensus 893 ~ 893 (897)
.
T Consensus 169 ~ 169 (1206)
T KOG2079|consen 169 T 169 (1206)
T ss_pred e
Confidence 4
No 418
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.87 E-value=0.25 Score=51.98 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=35.7
Q ss_pred cccccccCC-CCce-ecCCCcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHHHHHHH
Q 002641 165 VCPITTHIF-DDPV-TLETGQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKRLIASW 227 (897)
Q Consensus 165 ~CpIC~~l~-~dPV-~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~li~~~ 227 (897)
.|--|+.-- .+|- ++.|+|.||..|..... ...||.|++++....+ .+| |..-|..+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l-~~s--lp~~ik~~ 63 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQL-NRS--LPTDIKSY 63 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeec-ccc--cchhHHHH
Confidence 466554332 2343 45999999999976432 2289999999766655 333 44444443
No 419
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.10 E-value=4.6 Score=47.56 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=87.9
Q ss_pred CChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHH
Q 002641 382 PSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEE 461 (897)
Q Consensus 382 ~~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~ 461 (897)
|.-.+++.-+.+|-|++.|+..+.+- ..-.||-+|-..--+.+ ++-..++..|++|.++..+.+.+..-
T Consensus 100 ppi~~vi~~G~v~~lV~~l~~~~~~~-----lq~eAAWaLTnIAsgts------e~T~~vv~agavp~fi~Ll~s~~~~v 168 (514)
T KOG0166|consen 100 PPIDEVIQSGVVPRLVEFLSRDDNPT-----LQFEAAWALTNIASGTS------EQTKVVVDAGAVPIFIQLLSSPSADV 168 (514)
T ss_pred CCHHHHHHcCcHHHHHHHHccCCChh-----HHHHHHHHHHHHhcCch------hhccccccCCchHHHHHHhcCCcHHH
Confidence 33455666689999999998654321 13356666655444443 47778899999999999999998888
Q ss_pred HHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCc-chhHHHHHHHHHHHhhc
Q 002641 462 RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASD-GERFEIVCFLSELVKLN 518 (897)
Q Consensus 462 ~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~l~el~~~~ 518 (897)
+-.|+--|-+=..-...||+++.+...+.|++.++..... .-..++.-.|+-|.+..
T Consensus 169 ~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 169 REQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred HHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 8887555544444445899999999999999999876443 34444555555554443
No 420
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.66 E-value=21 Score=37.88 Aligned_cols=103 Identities=11% Similarity=-0.014 Sum_probs=64.9
Q ss_pred eecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEe-CC-EEEEEecCCeEEEEeCCCCcceeEEEee--c-
Q 002641 780 PLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACF-RD-KIFSGHSDGTIKVWTGRGSILHLIQQIR--E- 853 (897)
Q Consensus 780 ~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fs-pd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~--g- 853 (897)
|...++.++++.-..+.|..|+.. .....+.... ...+++. ++ .++.+..++. .++|..+++...+.... .
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCS
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCc
Confidence 334467788888788999999987 3333222222 6677777 55 6777666555 45598887544444442 1
Q ss_pred cCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCC
Q 002641 854 HTKAVTGLAILQSGEMLYSGSLD--------KTARVRSND 885 (897)
Q Consensus 854 H~~~V~slafspdg~~L~SgS~D--------~tIrlWdi~ 885 (897)
.....+.+++.|+|+..++.+.. +.+..++..
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 33467899999999988777654 345556655
No 421
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=85.64 E-value=13 Score=38.85 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=64.9
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCCCCc-----------EEEEEEeCCEEEEEecCC-eEEEEeCCCCcceeEE
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSENGK-----------VLSIACFRDKIFSGHSDG-TIKVWTGRGSILHLIQ 849 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~-----------V~sV~fspd~L~Sgs~Dg-tIrlWd~~~~~~~~i~ 849 (897)
++..++.+..++.+..+|.. +.+.....+... ...+.+..+.++.++.++ .+.+ |+.+++ .+.
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~--~~w 197 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE--KLW 197 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE--EEE
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC--EEE
Confidence 47778888889999999976 554444443321 133344445777777777 4667 999984 233
Q ss_pred EeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCcc
Q 002641 850 QIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSFT 888 (897)
Q Consensus 850 ~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~~ 888 (897)
... -..+..+ ..+++..++.++.|+.+..||+++|.
T Consensus 198 ~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 198 SKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred Eec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 222 2223321 34678888888899999999999983
No 422
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.49 E-value=0.29 Score=57.62 Aligned_cols=102 Identities=11% Similarity=0.170 Sum_probs=77.0
Q ss_pred cEEEEecCCCCeEEEeCC----cceeeccCCCCcEEEEEEeC-C--EEEEEe----cCCeEEEEeCCCC--cceeEEEee
Q 002641 786 VKVLSNGHDSSADFWNHR----ELVHVDSSENGKVLSIACFR-D--KIFSGH----SDGTIKVWTGRGS--ILHLIQQIR 852 (897)
Q Consensus 786 ~~LaSgs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fsp-d--~L~Sgs----~DgtIrlWd~~~~--~~~~i~~l~ 852 (897)
-.++.|..+|.|-+-.++ ....+..+|....++++|++ | .|+.|- .|..+++||+.+. .+..-..|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 467889999999998876 33555667889999999998 3 787774 3678999999876 211122233
Q ss_pred c-cCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 853 E-HTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 853 g-H~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+ ....+.+++|..+.+.+.+|...+.+.++|++..
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred cccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 3 3445668899888899999999999999999843
No 423
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=84.96 E-value=7.2 Score=50.01 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=75.1
Q ss_pred ceeEeeecccccEEEEecC---C---CCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEec---CCeEEEEeCCC
Q 002641 775 LRKYSPLAFEMVKVLSNGH---D---SSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHS---DGTIKVWTGRG 842 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~---D---gtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~---DgtIrlWd~~~ 842 (897)
....+.+-.||.++|.++. + ..+|||+-. .+..+-..-.+--.+++|.|. +|++... ...|-+|.-++
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 4445556679999988875 2 478999976 443333333455568899985 7777654 35666776554
Q ss_pred CcceeEEEee--ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 843 SILHLIQQIR--EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 843 ~~~~~i~~l~--gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
-. .--..++ .....|..++|++|++.|+..-.|. |.+|-..+.
T Consensus 291 Lr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 291 LR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred cE-eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 32 1112222 3456799999999999999987666 999988775
No 424
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.62 E-value=16 Score=40.42 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=29.3
Q ss_pred cCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCccc
Q 002641 854 HTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSFTY 889 (897)
Q Consensus 854 H~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~~~l 889 (897)
-.++|-+|+++++|..++..| ..+.+-+||..+|.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 346889999999998776666 577999999999843
No 425
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=84.18 E-value=2.1 Score=49.86 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=54.5
Q ss_pred cEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCC-----------CcEEE
Q 002641 815 KVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLD-----------KTARV 881 (897)
Q Consensus 815 ~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D-----------~tIrl 881 (897)
.-+.|.|||- +|+|-+.-| |.+|--.+- ..++.|. |. .|..+.|||..++|+|=|.. ..++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccH--HHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 3567899995 787766655 678977654 2344443 54 48889999999999987742 57899
Q ss_pred EeCCCc-cceeee
Q 002641 882 RSNDSF-TYAIFI 893 (897)
Q Consensus 882 Wdi~~~-~l~~l~ 893 (897)
||+++| ....|.
T Consensus 287 WDI~tG~lkrsF~ 299 (698)
T KOG2314|consen 287 WDIATGLLKRSFP 299 (698)
T ss_pred EEccccchhccee
Confidence 999999 666664
No 426
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.12 E-value=4 Score=47.60 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=68.5
Q ss_pred EEecCCCCeEEEeCC----cceeeccCCC----CcEEEEEEeCC-EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641 789 LSNGHDSSADFWNHR----ELVHVDSSEN----GKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (897)
Q Consensus 789 aSgs~DgtIklWd~~----~~l~~l~gH~----~~V~sV~fspd-~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~ 859 (897)
+.|=.|..|.-||.+ ..+...++|. ....|.+-..+ +++.||.+|-||+||--.. +.-..|.|-..+|.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~--~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR--RAKTALPGLGDAIK 475 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhh--hhhhcccccCCcee
Confidence 345567888889987 2455556663 34555555555 9999999999999998443 45667889999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 860 GLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 860 slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
.|..+.+|++|+..+ +..+.+-++.
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEEe
Confidence 999999999877655 5566665553
No 427
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=83.81 E-value=0.92 Score=48.14 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=37.0
Q ss_pred cccccccccCCCCceec-CCCcccchHHHHHHHhcC-CCCCCCCCcc
Q 002641 163 DFVCPITTHIFDDPVTL-ETGQTYERRAIQEWIERG-NSSCPITRQK 207 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l-~CGHtFCr~CI~~~~~~~-~~~CP~Cr~~ 207 (897)
+++|||....+..||+- .|||.|.|.-|..++... ...||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 68999999999999975 999999999999988742 3469974433
No 428
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=1.1 Score=50.39 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=28.2
Q ss_pred CCcccccccccCCCCc---eecCCCcccchHHHHHHHh
Q 002641 161 PKDFVCPITTHIFDDP---VTLETGQTYERRAIQEWIE 195 (897)
Q Consensus 161 ~~el~CpIC~~l~~dP---V~l~CGHtFCr~CI~~~~~ 195 (897)
..-|.|.||.+-..=- +-++|+|.||+.|...|+.
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 3457899999877543 3469999999999999886
No 429
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.53 E-value=3.3 Score=32.04 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=27.0
Q ss_pred CCeEEEEEccC-C--CEEEEEeCCCcEEEEeCCCc
Q 002641 856 KAVTGLAILQS-G--EMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 856 ~~V~slafspd-g--~~L~SgS~D~tIrlWdi~~~ 887 (897)
++|.+++|+|+ + ..|+-+-.-+.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999985 4 58888888899999999965
No 430
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.93 E-value=0.33 Score=57.13 Aligned_cols=114 Identities=20% Similarity=0.253 Sum_probs=75.9
Q ss_pred eecccccccceeEeee-cccccEEEEec----CCCCeEEEeCCcc------eeeccC-CCCcEEEEEEeCC--EEEEEec
Q 002641 766 KDIMKGLRELRKYSPL-AFEMVKVLSNG----HDSSADFWNHREL------VHVDSS-ENGKVLSIACFRD--KIFSGHS 831 (897)
Q Consensus 766 ~~~l~~~~~~~~~~~~-s~d~~~LaSgs----~DgtIklWd~~~~------l~~l~g-H~~~V~sV~fspd--~L~Sgs~ 831 (897)
|.+..++...-+..++ +-|..+||.|- .|..++|||+... -..|.+ -...+.+++|-.+ ++.+|..
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 3344444433333333 33666777664 3568999998621 111222 2344568888876 8899999
Q ss_pred CCeEEEEeCCCCcceeEEEeeccCCCeEEEEEcc-CCCEEEEEeCCCcEEEEe
Q 002641 832 DGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQ-SGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 832 DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafsp-dg~~L~SgS~D~tIrlWd 883 (897)
...++++|++.. +...-.-.++.|..+.++| .++++++-+ ||.|-+||
T Consensus 175 sr~~~ifdlRqs---~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 175 SRSVHIFDLRQS---LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cchhhhhhhhhh---hhhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence 999999999964 2333334577788888889 788888777 99999999
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.49 E-value=0.61 Score=56.83 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCeEEEeCC----c-----ceeeccCCCCcEEEEEEeC---C--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641 795 SSADFWNHR----E-----LVHVDSSENGKVLSIACFR---D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (897)
Q Consensus 795 gtIklWd~~----~-----~l~~l~gH~~~V~sV~fsp---d--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s 860 (897)
|..-|||++ + .++..+.....+.-|.|.| + ++.-|-.|++|++....... ...|++|..+++.
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL---RSLFRSHSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH---HHHHHhcCCCccc
Confidence 455678865 1 2333334455667777876 3 66667778999988877652 3457778887776
Q ss_pred EE-----------EccCCCEEEEEeCCCcEEEEeC
Q 002641 861 LA-----------ILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 861 la-----------fspdg~~L~SgS~D~tIrlWdi 884 (897)
++ .||||+.|+.++.||.+++|.+
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 65 4678888888888888888765
No 432
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.34 E-value=13 Score=44.93 Aligned_cols=92 Identities=13% Similarity=-0.035 Sum_probs=62.1
Q ss_pred CCCeEEEeCCc----c--eeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcc----------eeEEEeecc
Q 002641 794 DSSADFWNHRE----L--VHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSIL----------HLIQQIREH 854 (897)
Q Consensus 794 DgtIklWd~~~----~--l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~----------~~i~~l~gH 854 (897)
+++|.+.|... . +..+-.-....+.+.++|| .+++|..+++|.|.|+.+.+. ..+.+..-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 34577777553 1 1111123456788999998 677788899999999987530 11222222
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 855 TKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 855 ~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
...-...+|.++|+...|-..|..|-.||+.+
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22334568999999888889999999999876
No 433
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=82.15 E-value=7.8 Score=45.39 Aligned_cols=105 Identities=7% Similarity=0.038 Sum_probs=71.8
Q ss_pred eeEeeecccccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC--EEEEEec-----------CCeEEEEeC
Q 002641 776 RKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHS-----------DGTIKVWTG 840 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd--~L~Sgs~-----------DgtIrlWd~ 840 (897)
-++..++|-|.||+|--.- -|.+|-=. ..++.| .| ..|..+.|||. +|+|=|. ...+.|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhc-cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 3567788999999987554 46688754 222222 23 45889999996 8888542 257899999
Q ss_pred CCCcceeEEEeec--cCCCeE-EEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 841 RGSILHLIQQIRE--HTKAVT-GLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 841 ~~~~~~~i~~l~g--H~~~V~-slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
.+|. ..+.|.. ....++ -+.||.|+++++.-..| +|.|++..+
T Consensus 290 ~tG~--lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps 335 (698)
T KOG2314|consen 290 ATGL--LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS 335 (698)
T ss_pred cccc--hhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCc
Confidence 9994 4555554 222333 46899999999887765 577887654
No 434
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=82.06 E-value=1.4 Score=33.35 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=31.1
Q ss_pred ccchhhhccchhHHHHHHhhhcchHHHHHHHHHHH
Q 002641 435 SSIANTIVSSKVFESVISSLEAEWAEERIAAVGIL 469 (897)
Q Consensus 435 ~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il 469 (897)
+.|+..++..|+++.|+.++++++.+-+..++.-|
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al 36 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWAL 36 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999876554
No 435
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.93 E-value=50 Score=42.53 Aligned_cols=79 Identities=23% Similarity=0.172 Sum_probs=45.2
Q ss_pred hhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhh--cchhhHHHHHhhcCcc
Q 002641 425 MIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADK--AELAPVMESFMAASDG 502 (897)
Q Consensus 425 ~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~--~~~~~~~~ll~~~~~~ 502 (897)
.|..-|......-+.++.+.+..+.|+..++..+.+.|..++.-|- .+.+. ..+..++.++...+..
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~-----------~~~~~~~~~~~~L~~ll~D~d~~ 790 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLA-----------TLGAGGAPAGDAVRALTGDPDPL 790 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHH-----------HhccccchhHHHHHHHhcCCCHH
Confidence 3333333333334445555555667777788888888887766553 11111 1145566666666666
Q ss_pred hhHHHHHHHHHH
Q 002641 503 ERFEIVCFLSEL 514 (897)
Q Consensus 503 ~~~~~~~~l~el 514 (897)
.|..++..|-.+
T Consensus 791 VR~aA~~aLg~~ 802 (897)
T PRK13800 791 VRAAALAALAEL 802 (897)
T ss_pred HHHHHHHHHHhc
Confidence 677777766554
No 436
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.85 E-value=0.54 Score=54.06 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCCCccccccc-ccCCCCceec--CCCcccchHHHHHHHhcCCCCCCCCCcccC-CCCCCcccHHHHHHHHHHHH
Q 002641 159 TPPKDFVCPIT-THIFDDPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLS-STKLPKTNYVLKRLIASWQE 229 (897)
Q Consensus 159 ~l~~el~CpIC-~~l~~dPV~l--~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~-~~~~~~pN~~L~~li~~~~~ 229 (897)
.+++.+.|++| .+.|.+-+++ .|+.+||..||.+.+-. ..||.|.+.-. ...+ .++..++..+.....
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~-~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDL-LPPKTLRDTINRILA 286 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhccccccc-CCchhhHHHHHHHHh
Confidence 68889999999 9999999988 89999999999886653 34666654422 2233 466666666655444
No 437
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.57 E-value=0.93 Score=52.01 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=34.3
Q ss_pred cccccccccCCCCc-e---ecCCCcccchHHHHHHHhc-----CCCCCCC--CCcccCCCC
Q 002641 163 DFVCPITTHIFDDP-V---TLETGQTYERRAIQEWIER-----GNSSCPI--TRQKLSSTK 212 (897)
Q Consensus 163 el~CpIC~~l~~dP-V---~l~CGHtFCr~CI~~~~~~-----~~~~CP~--Cr~~~~~~~ 212 (897)
...|.||..-..++ - +..|||-||..|..+++.. ....||. |...++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 57899999333222 2 4579999999999999872 2346774 666665544
No 438
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=81.56 E-value=6.3 Score=45.68 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=64.9
Q ss_pred CCeEEEeCC-cceeeccCCCCcEEEEEEeCC----EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCE
Q 002641 795 SSADFWNHR-ELVHVDSSENGKVLSIACFRD----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEM 869 (897)
Q Consensus 795 gtIklWd~~-~~l~~l~gH~~~V~sV~fspd----~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~ 869 (897)
..+.|+++. ..+.+..+-.++|..++|+|+ -+++|-.+-++-++|+++. ....+. .+.=..+-|+|.+++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~P--e~~rNT~~fsp~~r~ 329 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFP--EQKRNTIFFSPHERY 329 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEecC--CcccccccccCcccE
Confidence 456677776 444444466899999999985 5666778999999999986 333333 333355779999999
Q ss_pred EEEEeCC---CcEEEEeCCCc
Q 002641 870 LYSGSLD---KTARVRSNDSF 887 (897)
Q Consensus 870 L~SgS~D---~tIrlWdi~~~ 887 (897)
++.++.| |.|-+||..+.
T Consensus 330 il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 330 ILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred EEEecCCccccceEEeccCCc
Confidence 9998877 58889998776
No 439
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.86 E-value=0.98 Score=48.91 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=37.9
Q ss_pred CCCCcccccccccCCC---CceecCCCcccchHHHHHHHhcC--CCCCCCCCcc
Q 002641 159 TPPKDFVCPITTHIFD---DPVTLETGQTYERRAIQEWIERG--NSSCPITRQK 207 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~---dPV~l~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~ 207 (897)
....-|+||+-.+.-. -||++.|||.--...+.+.-+.| .+.||.|...
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 4556789999777665 48999999999999998866554 4579999543
No 440
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.69 E-value=0.56 Score=48.75 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=37.6
Q ss_pred Cccccccccc-CCCCcee--c---CCCcccchHHHHHHHhcCCCCCC--CCCcccCC
Q 002641 162 KDFVCPITTH-IFDDPVT--L---ETGQTYERRAIQEWIERGNSSCP--ITRQKLSS 210 (897)
Q Consensus 162 ~el~CpIC~~-l~~dPV~--l---~CGHtFCr~CI~~~~~~~~~~CP--~Cr~~~~~ 210 (897)
.+-.||||.. .+-.|=+ + .|-|..|-+|+.+.+..|...|| .|++.+..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 4568999974 4445532 1 49999999999999999988999 78776543
No 441
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=79.92 E-value=72 Score=37.88 Aligned_cols=252 Identities=16% Similarity=0.159 Sum_probs=129.7
Q ss_pred HHHHHHHhcC----chHHHHHHHHhCCChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccc
Q 002641 360 ERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVS 435 (897)
Q Consensus 360 ~~i~~llk~~----~~ea~~LL~~L~~~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~ 435 (897)
..+..++... ...|...+..+-..+++....++++.|...|...+ + .-..||+.++..+ ...|
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~-~------~V~~~a~~~l~~i-~~~~----- 183 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD-P------SVVSAALSLLSEI-KCND----- 183 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS-H------HHHHHHHHHHHHH-HCTH-----
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc-c------hhHHHHHHHHHHH-ccCc-----
Confidence 3444555554 44555555555545555555447888888884332 2 1234677777666 1111
Q ss_pred cchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHH
Q 002641 436 SIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELV 515 (897)
Q Consensus 436 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~ 515 (897)
.... -.-...++.|..++...+...++.++.+|......+..-..- ..-+.++..+|...+.+...+|+.++..+.
T Consensus 184 ~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 184 DSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 0000 122334455555556677777777777776554443333311 345566666777777777777777777665
Q ss_pred hhch-hhhhHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHHHHhhhhhc-CcccccccHHHHHHHHH--------
Q 002641 516 KLNR-RTFNEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLA-EPRKMSIYREEAIDTLI-------- 585 (897)
Q Consensus 516 ~~~r-~~~~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~lllqld~l~-~~~~~s~~reea~~~~~-------- 585 (897)
.-.. ...+...|..+=.....+.-.+-+..+.+-.....+.+......+..|. ++.. ++ |..|++.+.
T Consensus 260 ~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~-~I-r~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 260 PSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDP-SI-RKKALDLLYKLANESNV 337 (526)
T ss_dssp SSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSH-HH-HHHHHHHHHHH--HHHH
T ss_pred cchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCCh-hH-HHHHHHHHhhcccccch
Confidence 5443 2233444444434444444444444444444444444444444444443 2221 11 444444333
Q ss_pred --------HHhhcCCchHHHHHHHHHHHhcccccccCCchhhHHHhHhhcCCCc
Q 002641 586 --------SCLRNSDYPAAQLAAAKTIVSLQGRFTTSGKSLTRAMLLKRAGVGK 631 (897)
Q Consensus 586 --------~~l~~~~~~~~q~~~~~~l~~l~g~~s~sg~~~~~~~llk~ag~~~ 631 (897)
..+........+..+.+++..+.-+|...-+. ...++++......
T Consensus 338 ~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-~v~~l~~ll~~~~ 390 (526)
T PF01602_consen 338 KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-YVDTLLKLLEISG 390 (526)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-HHHHHHHHHHCTG
T ss_pred hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-HHHHHHHhhhhcc
Confidence 34433334457788888888888888333222 3345555555544
No 442
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=79.85 E-value=4.8 Score=31.78 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=26.4
Q ss_pred CCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 813 NGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 813 ~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
...|.+++|+|. ++|.|..||.|.++.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 457999999995 999999999999999843
No 443
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=79.81 E-value=7.7 Score=33.85 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=15.3
Q ss_pred HHHHHHhh-hcchHHHHHHHHHHHh
Q 002641 447 FESVISSL-EAEWAEERIAAVGILL 470 (897)
Q Consensus 447 ~~~l~~~~-~~~~~~~~~~~~~il~ 470 (897)
|+.|++.+ ++++...|..++..|-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~ 25 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG 25 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45677777 6666777776655554
No 444
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.81 E-value=1.3 Score=48.53 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=39.5
Q ss_pred CCCcccccccccCCCCceecCCCcccchHHHHHHHh-cCCCCCCCCCccc
Q 002641 160 PPKDFVCPITTHIFDDPVTLETGQTYERRAIQEWIE-RGNSSCPITRQKL 208 (897)
Q Consensus 160 l~~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~-~~~~~CP~Cr~~~ 208 (897)
=+++-.|-||-.-..--..+||||..|..|-.+.-. ...+.||.||..-
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 456789999999988888899999999999876433 2356899999764
No 445
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.69 E-value=0.53 Score=59.66 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=39.6
Q ss_pred CCCcccccccccCCC-CceecCCCcccchHHHHHHHhcCCCCCCCCCcc
Q 002641 160 PPKDFVCPITTHIFD-DPVTLETGQTYERRAIQEWIERGNSSCPITRQK 207 (897)
Q Consensus 160 l~~el~CpIC~~l~~-dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~ 207 (897)
+-..+.|+||+++++ .--+..|||.||..|+..|+.. ...||.|+..
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSI 1197 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhh
Confidence 344569999999999 6778899999999999999985 4589999844
No 446
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=79.61 E-value=1.2 Score=40.52 Aligned_cols=28 Identities=14% Similarity=0.598 Sum_probs=24.3
Q ss_pred CCCcccchHHHHHHHhcCCCCCCCCCccc
Q 002641 180 ETGQTYERRAIQEWIERGNSSCPITRQKL 208 (897)
Q Consensus 180 ~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~ 208 (897)
.|.|.|-..||.+|++. +..||.|.+.-
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcce
Confidence 69999999999999996 45899998763
No 447
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.92 E-value=0.85 Score=50.65 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=36.1
Q ss_pred CcccccccccCCCC-ce---ecCCCcccchHHHHHHHhc-CCCCCCCCCcc
Q 002641 162 KDFVCPITTHIFDD-PV---TLETGQTYERRAIQEWIER-GNSSCPITRQK 207 (897)
Q Consensus 162 ~el~CpIC~~l~~d-PV---~l~CGHtFCr~CI~~~~~~-~~~~CP~Cr~~ 207 (897)
-++.|-.|++.+-- |- -+||.|.|--.|+++++.+ +..+||.||+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 36889999998732 22 2599999999999998875 45689999843
No 448
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.87 E-value=24 Score=43.40 Aligned_cols=101 Identities=24% Similarity=0.275 Sum_probs=76.5
Q ss_pred hccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhh------hcchhhHHHHHhhcCcchhHHHHHHHHHH
Q 002641 441 IVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIAD------KAELAPVMESFMAASDGERFEIVCFLSEL 514 (897)
Q Consensus 441 ~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~------~~~~~~~~~ll~~~~~~~~~~~~~~l~el 514 (897)
+.+.+-|..|+..++..|...|..++.++.-=| +||.--++ -..++.++++|+..-.-.|-+++.+|.||
T Consensus 118 ik~qd~I~lll~~~e~~DF~VR~~aIqLlsall----s~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL 193 (970)
T KOG0946|consen 118 IKNQDNITLLLQSLEEFDFHVRLYAIQLLSALL----SCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSEL 193 (970)
T ss_pred HcCchhHHHHHHHHHhhchhhhhHHHHHHHHHH----hcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHH
Confidence 456778899999999999999999998876443 35543333 45678899999998888999999999999
Q ss_pred Hhhchh--------hhhHHHHHHhhccCccchhhHHHHH
Q 002641 515 VKLNRR--------TFNEQILHIIKDEGTYSSMHTLLVY 545 (897)
Q Consensus 515 ~~~~r~--------~~~~~~l~~i~~~g~~~~m~~l~~~ 545 (897)
++.+-. -.-+.++.+|+++|+....-+...|
T Consensus 194 ~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDC 232 (970)
T KOG0946|consen 194 VKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDC 232 (970)
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 998832 1123568899999976664444444
No 449
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=78.75 E-value=1.6 Score=43.12 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=37.1
Q ss_pred CcccccccccCCCCceecCCC-c-ccc-----------hHHHHHHHhcC------------------------------C
Q 002641 162 KDFVCPITTHIFDDPVTLETG-Q-TYE-----------RRAIQEWIERG------------------------------N 198 (897)
Q Consensus 162 ~el~CpIC~~l~~dPV~l~CG-H-tFC-----------r~CI~~~~~~~------------------------------~ 198 (897)
++.+||||++.-.+.|.+-|. | .=| ..|+.+|.+.. .
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 467899999999999998543 2 222 26888876410 1
Q ss_pred CCCCCCCcccCCCCCC
Q 002641 199 SSCPITRQKLSSTKLP 214 (897)
Q Consensus 199 ~~CP~Cr~~~~~~~~~ 214 (897)
..||.||..+..-.++
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 2599999888776653
No 450
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=76.86 E-value=15 Score=44.98 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=114.9
Q ss_pred cccccccchHHHHHHHHHHHhccCChHHHHHHHHHHHHhhhcc----HHHHHHhhhccchHHHHHHHHhcC----chHHH
Q 002641 303 LDIQIMLSKPAVINGFVEILFNSVDPRVLEATIFLLSELGSRD----KSVIHTLTRVESDVERIVALFKKG----LLEAV 374 (897)
Q Consensus 303 h~~h~~l~~~~a~~~~ke~L~~sl~~~vlk~a~~~l~el~s~~----e~~~~~i~~~~~~~~~i~~llk~~----~~ea~ 374 (897)
.++-.++-.+.++..|...|..+++..+++++.-.|+.+-.-. ...+..+..++..+.-|++++..+ +..++
T Consensus 508 pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a 587 (717)
T KOG1048|consen 508 PKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAA 587 (717)
T ss_pred CCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHH
Confidence 4455667788899999999999999999999888887765432 335667777888899999999887 67777
Q ss_pred HHHHHhCCChhhHHHHh--hHHHHHHHHHhhc------chhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchh
Q 002641 375 VLIDLLRPSTRTLIEMD--MMESLMTVIKKKE------EDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKV 446 (897)
Q Consensus 375 ~LL~~L~~~~~~i~~~~--~~~~Ll~~l~~~~------~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~ 446 (897)
.+|-.|+....|..-|+ .++.|++.|.... ++. + .|..+-|+-++ ..|..||+.+...++
T Consensus 588 ~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt--v-----~~vc~tl~niv-----~~~~~nAkdl~~~~g 655 (717)
T KOG1048|consen 588 GALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDT--V-----RAVCHTLNNIV-----RKNVLNAKDLLEIKG 655 (717)
T ss_pred HHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHH--H-----HHHHHhHHHHH-----HHhHHHHHHHHhccC
Confidence 79999998887776666 6777999887732 221 1 23444555555 345689999999999
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHh
Q 002641 447 FESVISSLEAEWAEERIAAVGILL 470 (897)
Q Consensus 447 ~~~l~~~~~~~~~~~~~~~~~il~ 470 (897)
+++|+.-.++-....-..+|+.++
T Consensus 656 ~~kL~~I~~s~~S~k~~kaAs~vL 679 (717)
T KOG1048|consen 656 IPKLRLISKSQHSPKEFKAASSVL 679 (717)
T ss_pred hHHHHHHhcccCCHHHHHHHHHHH
Confidence 999998887755544455555544
No 451
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.72 E-value=42 Score=36.20 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=64.0
Q ss_pred ccEEEEecCCCCeEEEeCC--cce-eeccCCCCcEEEEE-EeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEE
Q 002641 785 MVKVLSNGHDSSADFWNHR--ELV-HVDSSENGKVLSIA-CFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTG 860 (897)
Q Consensus 785 ~~~LaSgs~DgtIklWd~~--~~l-~~l~gH~~~V~sV~-fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~s 860 (897)
..+++.||..+.++--|.. ++. ++.. ...+-+-+ .-.|+++-|...|.+.+-+.+++. .+..|..-..-=..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs--~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGS--QIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEEECCEEEEEEccCcEEEEEecchh--heeeeeehhhhccc
Confidence 4566777777777766654 111 1111 22222221 245789999999999999999984 45555432221122
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 861 LAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 861 lafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
....+++..++.||.|++...-|.++.
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEeccccc
Confidence 345678999999999999999998875
No 452
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=76.59 E-value=16 Score=39.73 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=43.1
Q ss_pred EEEEEecCCeEEEEeCCCCcceeEEEeeccCC---CeEEEEEccCCCEEEEEeCCCcEEEEeCCCccceee
Q 002641 825 KIFSGHSDGTIKVWTGRGSILHLIQQIREHTK---AVTGLAILQSGEMLYSGSLDKTARVRSNDSFTYAIF 892 (897)
Q Consensus 825 ~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~---~V~slafspdg~~L~SgS~D~tIrlWdi~~~~l~~l 892 (897)
.++..=.|..|-+-..+.+-..++.....+++ .=..++||||+..|+.+...|+|+++|+-+..+-.+
T Consensus 10 k~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 10 KLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred cEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 34444455566665555432122233333333 235799999999999999999999999987644333
No 453
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=76.32 E-value=22 Score=40.86 Aligned_cols=97 Identities=9% Similarity=0.096 Sum_probs=60.3
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCC-CCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE-
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSE-NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT- 859 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH-~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~- 859 (897)
++..+..++.|+.+..+|.. +.+-....- .....+.....+.++.++.||.+...|..+++ .+...+-+...+.
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~--~~~~~~~~~~~~~s 370 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR--FVAQQKVDSSGFLS 370 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC--EEEEEEcCCCccee
Confidence 45667777788888888875 222211111 11223333445688999999999999999984 5555543333332
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 860 GLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 860 slafspdg~~L~SgS~D~tIrlWdi 884 (897)
+-.+ .+..|+.++.||++..++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 2222 2557889999999887763
No 454
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=75.93 E-value=29 Score=40.21 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=51.3
Q ss_pred CCCCcEEEEEEeC-CEEEEEecCCeEEEEeCCCCcceeEEE--eec------cCCCeEEEEEcc-----CC---CEEEEE
Q 002641 811 SENGKVLSIACFR-DKIFSGHSDGTIKVWTGRGSILHLIQQ--IRE------HTKAVTGLAILQ-----SG---EMLYSG 873 (897)
Q Consensus 811 gH~~~V~sV~fsp-d~L~Sgs~DgtIrlWd~~~~~~~~i~~--l~g------H~~~V~slafsp-----dg---~~L~Sg 873 (897)
...+.|++++.|. .+++.|+.||++-|.|+++.. .+.. +.. ....|+++.|.. |+ -.++.|
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3578999999975 399999999999999999873 3333 333 234688888873 23 368888
Q ss_pred eCCCcEEEEeCC
Q 002641 874 SLDKTARVRSND 885 (897)
Q Consensus 874 S~D~tIrlWdi~ 885 (897)
...|.+.+|.+-
T Consensus 162 Tn~G~v~~fkIl 173 (395)
T PF08596_consen 162 TNSGNVLTFKIL 173 (395)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCCEEEEEEe
Confidence 889999999875
No 455
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=75.47 E-value=60 Score=37.76 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 002641 856 KAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 856 ~~V~slafspdg~~L~SgS~D~tIrlWdi~ 885 (897)
+++..+++||+|++++.-..+|++.+.+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 578999999999999999999998887643
No 456
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=75.27 E-value=1.1 Score=41.24 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCCCcccccccccCCCCceec--CCCcccchHHHH
Q 002641 159 TPPKDFVCPITTHIFDDPVTL--ETGQTYERRAIQ 191 (897)
Q Consensus 159 ~l~~el~CpIC~~l~~dPV~l--~CGHtFCr~CI~ 191 (897)
.+.++-.|++|+.-+.+++.. ||||.|...|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 567778899999999987753 999999999975
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=75.18 E-value=14 Score=44.65 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=26.5
Q ss_pred CeEEEEEcc----CCCEEEEEeCCCcEEEEeCCCc-ccee
Q 002641 857 AVTGLAILQ----SGEMLYSGSLDKTARVRSNDSF-TYAI 891 (897)
Q Consensus 857 ~V~slafsp----dg~~L~SgS~D~tIrlWdi~~~-~l~~ 891 (897)
.+.++++++ +..++++-+.|+++|+||+.++ ++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 456677766 6789999999999999999999 5433
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.96 E-value=3.9 Score=50.28 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=75.0
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-cceeeccCCCCcEEEEEEe-----------CC--EEEEEecCCeEEEEe
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACF-----------RD--KIFSGHSDGTIKVWT 839 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~l~~l~gH~~~V~sV~fs-----------pd--~L~Sgs~DgtIrlWd 839 (897)
..+..+.+..+..++.-+-.+++|++.+.+ -....+.+|..++..++|. || .++..+.||.++.|.
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 445555566677888889999999988876 3336677898888777664 45 677777777777777
Q ss_pred CC-CC--cceeEEEeeccCCC--eEEEEEccC-------C--CEEEEEe-CCCcEEEEeCCCc
Q 002641 840 GR-GS--ILHLIQQIREHTKA--VTGLAILQS-------G--EMLYSGS-LDKTARVRSNDSF 887 (897)
Q Consensus 840 ~~-~~--~~~~i~~l~gH~~~--V~slafspd-------g--~~L~SgS-~D~tIrlWdi~~~ 887 (897)
+. ++ ..+|++..+.|.+. |..+ |+-+ | .++++++ ..+-+++|....-
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 65 22 24667778888853 3333 3211 1 2455555 4568999987664
No 459
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=73.93 E-value=1.4e+02 Score=35.29 Aligned_cols=172 Identities=13% Similarity=0.249 Sum_probs=97.4
Q ss_pred HHHhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcC----chHHHHHHHHhCCChhhHHHHhhHHH
Q 002641 320 EILFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMES 395 (897)
Q Consensus 320 e~L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~----~~ea~~LL~~L~~~~~~i~~~~~~~~ 395 (897)
..+..+-.+-|.+.|..-+.++...+.+.... . -.+.+..+++.. ..-|..+|+.++..++... .+++.
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~----~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~ 192 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVED----E-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPK 192 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG----G-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHH----H-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHH
Confidence 33344666778888888888776655432211 0 245566666443 3344457788822222212 67777
Q ss_pred HHHHHHh---hcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhh
Q 002641 396 LMTVIKK---KEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRC 472 (897)
Q Consensus 396 Ll~~l~~---~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c 472 (897)
+...|++ ...+|.+.. .+-++..+..... ..... ...+..+...+.+.+......++..+...
T Consensus 193 ~~~~L~~~l~~~~~~~q~~------il~~l~~~~~~~~-----~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 193 LIRILCQLLSDPDPWLQIK------ILRLLRRYAPMEP-----EDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp HHHHHHHHHTCCSHHHHHH------HHHHHTTSTSSSH-----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccchHHHHH------HHHHHHhcccCCh-----hhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777764 234543211 2222222221111 11100 45667777777777777777777766643
Q ss_pred ccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhc
Q 002641 473 MQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLN 518 (897)
Q Consensus 473 ~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~ 518 (897)
..... .-...+.+++.+|.+.+...|..++..|..+...+
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred hcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 33222 34455777888888777778888988888887765
No 460
>PRK02888 nitrous-oxide reductase; Validated
Probab=72.36 E-value=25 Score=42.70 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=41.2
Q ss_pred cCCeEEEEeCCC----CcceeEEEeeccCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCc
Q 002641 831 SDGTIKVWTGRG----SILHLIQQIREHTKAVTGLAILQSGEMLYSGS-LDKTARVRSNDSF 887 (897)
Q Consensus 831 ~DgtIrlWd~~~----~~~~~i~~l~gH~~~V~slafspdg~~L~SgS-~D~tIrlWdi~~~ 887 (897)
.+++|.+.|..+ +. ..+. .-.-.+..+.++++|||++++.++ .+.++.|.|+.+.
T Consensus 294 ~gn~V~VID~~t~~~~~~-~v~~-yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGS-ALTR-YVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred CCCEEEEEECCccccCCc-ceEE-EEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 367899999988 31 2333 333556788999999998877665 6899999999874
No 461
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=71.78 E-value=36 Score=39.05 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=59.7
Q ss_pred ccEEEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccC-CCeEEE
Q 002641 785 MVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHT-KAVTGL 861 (897)
Q Consensus 785 ~~~LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~-~~V~sl 861 (897)
+..+..++.++.+.-+|.. +.+.... .+....+....+.++.++.||.+..+|..+++ .+.....-. ....+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKRE--YGSVNDFAVDGGRIYLVDQNDRVYALDTRGGV--ELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeec--CCCccCcEEECCEEEEEcCCCeEEEEECCCCc--EEEcccccCCCcccCC
Confidence 4455566678888877765 2222211 11222344455688888999999999999884 333221111 112222
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 862 AILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 862 afspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.+ .+..++.++.||.+...|..+|
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCC
Confidence 22 2567888999999999999988
No 462
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=71.65 E-value=12 Score=43.47 Aligned_cols=91 Identities=23% Similarity=0.280 Sum_probs=63.1
Q ss_pred EEeCC-cceeeccC-CCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEe
Q 002641 799 FWNHR-ELVHVDSS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGS 874 (897)
Q Consensus 799 lWd~~-~~l~~l~g-H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS 874 (897)
+|+.. ....+..+ .+-++..+.|||. +|++ ..-.-|.+|+..... . +..+. | ..|..+.|+|.|++|.+=+
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~-~~~~~V~~~~g~~~~-~-l~~~~-~-~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFS-EHAAGVECWGGPSKA-K-LVRFR-H-PDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheeh-hhccceEEccccchh-h-eeeee-c-CCceecccCcccceeeeec
Confidence 56655 33334334 5678999999996 5554 444568899987763 3 33333 3 4589999999999999877
Q ss_pred CCCc---------------EEEEeCCCc-cceeeec
Q 002641 875 LDKT---------------ARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 875 ~D~t---------------IrlWdi~~~-~l~~l~~ 894 (897)
.... +.+||+.+| .+..|..
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~ 126 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNG 126 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccc
Confidence 6544 899999999 6655543
No 463
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.16 E-value=3.6 Score=34.98 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=29.3
Q ss_pred CcccchHHHHHHHhcCCCCCCCCCcccCCCCCCcccHHHHH
Q 002641 182 GQTYERRAIQEWIERGNSSCPITRQKLSSTKLPKTNYVLKR 222 (897)
Q Consensus 182 GHtFCr~CI~~~~~~~~~~CP~Cr~~~~~~~~~~pN~~L~~ 222 (897)
-||||..|.+.-+. ..||.|+-.+..+++ +|--.|.+
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv~RP~-RPaa~L~r 64 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELVARPI-RPAAKLAR 64 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhhcCcC-ChHHHHhh
Confidence 46999999987664 389999999988888 77765543
No 464
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=71.11 E-value=4.4 Score=35.20 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=21.4
Q ss_pred cccccccccCCC-----Cceec--CCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 163 DFVCPITTHIFD-----DPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 163 el~CpIC~~l~~-----dPV~l--~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
.-.|.||++-.- +|.+. .|+--.||.|.+-=.+.++..||.|+....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 346999988653 44444 799999999997656667889999997654
No 465
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.78 E-value=18 Score=46.31 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=69.4
Q ss_pred EeeecccccEEEEec----CC-CCeEEEeCCc-ceeeccCCCCcEEEEEEeCC--EEEEE---ecCCeEEEEeCCCCc-c
Q 002641 778 YSPLAFEMVKVLSNG----HD-SSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSG---HSDGTIKVWTGRGSI-L 845 (897)
Q Consensus 778 ~~~~s~d~~~LaSgs----~D-gtIklWd~~~-~l~~l~gH~~~V~sV~fspd--~L~Sg---s~DgtIrlWd~~~~~-~ 845 (897)
.+.+-.||.++|..+ .+ ++|+|||-.. +-.+-....+-=.+++|-|. .+++- .+|+.|.++.-++-. .
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 344556888887732 34 8999999772 22222223344568899884 55553 456688888866432 0
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEE---EeCCCcEEEEeCCCc
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYS---GSLDKTARVRSNDSF 887 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~S---gS~D~tIrlWdi~~~ 887 (897)
...-.+......|..++|+.++..|+. ......|++|-+.+.
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 111123333445899999999998887 444455999988765
No 466
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=70.48 E-value=2.6 Score=45.77 Aligned_cols=43 Identities=33% Similarity=0.634 Sum_probs=35.4
Q ss_pred cccccccccCCC----CceecCCCcccchHHHHHHHhcCCCCCCCCCc
Q 002641 163 DFVCPITTHIFD----DPVTLETGQTYERRAIQEWIERGNSSCPITRQ 206 (897)
Q Consensus 163 el~CpIC~~l~~----dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~ 206 (897)
++.||||.+.+. +|..++|||+-=..|.......+ .+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 455999998775 56678999998888888877766 89999977
No 467
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.38 E-value=44 Score=43.03 Aligned_cols=111 Identities=10% Similarity=-0.053 Sum_probs=69.3
Q ss_pred ceeEeeecccccEEEEecCCCCeEEEeCCcceeeccC-CCCcEEEEEEeCC--EEEEEecCCeEEEEeC----CCCc---
Q 002641 775 LRKYSPLAFEMVKVLSNGHDSSADFWNHRELVHVDSS-ENGKVLSIACFRD--KIFSGHSDGTIKVWTG----RGSI--- 844 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs~DgtIklWd~~~~l~~l~g-H~~~V~sV~fspd--~L~Sgs~DgtIrlWd~----~~~~--- 844 (897)
.+....|-.++..++.+..+|.|.+-|.....-...| -.+.|.+.+|||| .++-...++++-+-+- -...
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~ 149 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD 149 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc
Confidence 3344445556777888888999999887733333334 4788999999998 6666666666654332 1110
Q ss_pred --------------ceeEEEeeccCC---------------------CeEEEEEccCCCEEEEE----eCC-CcEEEEeC
Q 002641 845 --------------LHLIQQIREHTK---------------------AVTGLAILQSGEMLYSG----SLD-KTARVRSN 884 (897)
Q Consensus 845 --------------~~~i~~l~gH~~---------------------~V~slafspdg~~L~Sg----S~D-~tIrlWdi 884 (897)
++-...|+|..+ .=+++.|--||++++.. ..| ++|+|||-
T Consensus 150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr 229 (1265)
T KOG1920|consen 150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR 229 (1265)
T ss_pred cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence 111223442211 12358999999988873 234 89999997
Q ss_pred C
Q 002641 885 D 885 (897)
Q Consensus 885 ~ 885 (897)
.
T Consensus 230 E 230 (1265)
T KOG1920|consen 230 E 230 (1265)
T ss_pred c
Confidence 6
No 468
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=67.61 E-value=0.66 Score=39.57 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=23.1
Q ss_pred cccccccccCCCCceecCCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 163 DFVCPITTHIFDDPVTLETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 163 el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
++.||.|..-| ...-||.+|..|-..+.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECcccccccee--cccCCCcccHHH
Confidence 46899999854 333489999999776543 347999998874
No 469
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.56 E-value=33 Score=36.31 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=40.2
Q ss_pred cEEEEEEeCCEEEEEecCCeEEEEeCCCCccee----EEE-ee-------ccCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 002641 815 KVLSIACFRDKIFSGHSDGTIKVWTGRGSILHL----IQQ-IR-------EHTKAVTGLAILQSGEMLYSGSLDKTARVR 882 (897)
Q Consensus 815 ~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~----i~~-l~-------gH~~~V~slafspdg~~L~SgS~D~tIrlW 882 (897)
.+..+..+.++++.-..+|.+++||+.+.+... +.. +. .....|..+.+..+|.-+++-+ +|....|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 334444445566666677777777777653000 000 11 3445677777777777666655 4566666
Q ss_pred eCCCc
Q 002641 883 SNDSF 887 (897)
Q Consensus 883 di~~~ 887 (897)
|..=+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 65433
No 470
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=67.49 E-value=2.5 Score=34.26 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=24.8
Q ss_pred CcccccccccCCCCceecCCCcccchHHHHHHHhc-CCCCCCCCCc
Q 002641 162 KDFVCPITTHIFDDPVTLETGQTYERRAIQEWIER-GNSSCPITRQ 206 (897)
Q Consensus 162 ~el~CpIC~~l~~dPV~l~CGHtFCr~CI~~~~~~-~~~~CP~Cr~ 206 (897)
+.|.||.|.+.+.. ..++..|....... ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 46899999994432 24555566655443 3457999975
No 471
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=67.30 E-value=19 Score=41.99 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=64.7
Q ss_pred eeEeeecccccEE-EEecCCCCeEEEeCC---cceeeccCCCCcEEEEEEeCC---EEEEEecCCeEEEEeCC--CCcce
Q 002641 776 RKYSPLAFEMVKV-LSNGHDSSADFWNHR---ELVHVDSSENGKVLSIACFRD---KIFSGHSDGTIKVWTGR--GSILH 846 (897)
Q Consensus 776 ~~~~~~s~d~~~L-aSgs~DgtIklWd~~---~~l~~l~gH~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~--~~~~~ 846 (897)
...-.+++||++| ++...||...||-++ +....+..-.+.-..=.|+|| +.++.+..|.-.||-.. +..
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-- 317 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-- 317 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--
Confidence 3344567888876 455667877766544 333334333333336678887 66666667776666554 432
Q ss_pred eEEEeeccCCCeEEEEEccCCCEEEEEeCC-Cc--EEEEeCCCc
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLD-KT--ARVRSNDSF 887 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~D-~t--IrlWdi~~~ 887 (897)
...+..+.+.-..-.|+|||++|+..+.+ |. |-+.|+.++
T Consensus 318 -~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 318 -VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred -eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 23333333333377899999998888743 43 555665554
No 472
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.15 E-value=67 Score=39.99 Aligned_cols=112 Identities=5% Similarity=0.019 Sum_probs=79.1
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC----cceeeccCC--CCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcc
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR----ELVHVDSSE--NGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~----~~l~~l~gH--~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~ 845 (897)
....+..++.+.+.+|.|-.||.|..+.=+ +..+..-.| +++|+.+.|.-+ .++....-..|.+|.+.+..
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~- 204 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT- 204 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-
Confidence 445666777788899999999999988532 333333344 678999999865 32344455679999998543
Q ss_pred eeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 846 HLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 846 ~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
.....+..|+..+.|..|++....|++++. .-+.+||....
T Consensus 205 p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 205 PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence 446668888889999999876664666553 45888887654
No 473
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=67.02 E-value=97 Score=35.05 Aligned_cols=128 Identities=9% Similarity=0.142 Sum_probs=86.8
Q ss_pred hhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhh-cc-chhHHHHHHhhhcchHHH
Q 002641 384 TRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTI-VS-SKVFESVISSLEAEWAEE 461 (897)
Q Consensus 384 ~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~-~s-~~~~~~l~~~~~~~~~~~ 461 (897)
.+++.+-+++..|+..|..-+-. ++|+++..+=..+-...+...-+ ...-+ -. +..+..|+..-+ +.+-
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fE------srKdv~~if~~llr~~~~~~~~p-~v~yl~~~~peil~~L~~gy~--~~di 139 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFE------SRKDVAQIFSNLLRRQIGSRSPP-TVDYLERHRPEILDILLRGYE--NPDI 139 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HH------HHHHHHHHHHHHHT--BTTB--H-HHHHHHT--THHHHHHHHGGG--STTT
T ss_pred HHHHHHhCHHHHHHHHhhhCCCc------ccccHHHHHHHHHhhccCCCCCc-hHHHHHhCCHHHHHHHHHHhc--Cccc
Confidence 35666777778877777664333 55666665555554444431101 11122 12 556778888776 4455
Q ss_pred HHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhchhh
Q 002641 462 RIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRT 521 (897)
Q Consensus 462 ~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~ 521 (897)
-..+..+|-.|++.+.-|| +|........+++.+...+...-..|+.-|.||+--++..
T Consensus 140 al~~g~mlRec~k~e~l~~-~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~ 198 (335)
T PF08569_consen 140 ALNCGDMLRECIKHESLAK-IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKL 198 (335)
T ss_dssp HHHHHHHHHHHTTSHHHHH-HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHH
T ss_pred cchHHHHHHHHHhhHHHHH-HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHH
Confidence 5677788999999999999 5555778888999988889999999999999999988755
No 474
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=66.66 E-value=82 Score=38.61 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=58.5
Q ss_pred ecCCCCeEEEeCC----cceeeccCCCCcEEEEEEe--CC--EEEEEecCCeEEEEeCC-----C--CcceeEEE--eec
Q 002641 791 NGHDSSADFWNHR----ELVHVDSSENGKVLSIACF--RD--KIFSGHSDGTIKVWTGR-----G--SILHLIQQ--IRE 853 (897)
Q Consensus 791 gs~DgtIklWd~~----~~l~~l~gH~~~V~sV~fs--pd--~L~Sgs~DgtIrlWd~~-----~--~~~~~i~~--l~g 853 (897)
.+...++.|||.+ +....+ ...+.|..+.|. || .+++.|.++.|.++.-. . .....+.. +..
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 3344678999987 222333 457889999997 44 77888888888888542 1 11122222 344
Q ss_pred cC-CCeEEEEEccCCCEEEEEeCCCcEEEEe
Q 002641 854 HT-KAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 854 H~-~~V~slafspdg~~L~SgS~D~tIrlWd 883 (897)
|+ .+|.+..|.++|..++.+| ..+.|+|
T Consensus 126 ~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 126 HTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred CCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 55 4789999999997665443 4677765
No 475
>PRK09687 putative lyase; Provisional
Probab=66.35 E-value=1.9e+02 Score=31.73 Aligned_cols=176 Identities=15% Similarity=0.109 Sum_probs=91.8
Q ss_pred hhHHHHHHh-hhcchHHHHHHHHHHHhh-hccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhchhhh
Q 002641 445 KVFESVISS-LEAEWAEERIAAVGILLR-CMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRRTF 522 (897)
Q Consensus 445 ~~~~~l~~~-~~~~~~~~~~~~~~il~~-c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~~~ 522 (897)
.+++.|... ++..+.+.|..++..|=. |-.. ...+...++.+...+...+...|..++..|-. ++....
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~------~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~---~~~~~a 160 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKN------PLYSPKIVEQSQITAFDKSTNVRFAVAFALSV---INDEAA 160 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc------cccchHHHHHHHHHhhCCCHHHHHHHHHHHhc---cCCHHH
Confidence 466777776 566778888887777632 1111 00111123344445555566777777766643 222222
Q ss_pred hHHHHHHhhccCccchhhHHHHHHHhcCcCCcchHHHHHHhhhhhcCcccccccHHHHHHHHHHHhhcCCchHHHHHHHH
Q 002641 523 NEQILHIIKDEGTYSSMHTLLVYLQTANHDQCPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAAQLAAAK 602 (897)
Q Consensus 523 ~~~~l~~i~~~g~~~~m~~l~~~l~~~~~~~~~~~a~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~~~~~q~~~~~ 602 (897)
+.-++..++++.. ..-| -++--|-++ ..--+++++.|+.+|. .....|+..++.
T Consensus 161 i~~L~~~L~d~~~-~VR~---------------~A~~aLg~~---------~~~~~~~~~~L~~~L~-D~~~~VR~~A~~ 214 (280)
T PRK09687 161 IPLLINLLKDPNG-DVRN---------------WAAFALNSN---------KYDNPDIREAFVAMLQ-DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHhcCCCH-HHHH---------------HHHHHHhcC---------CCCCHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 3333344444322 1111 122222111 1113678888888885 446678888887
Q ss_pred HHHhcccccccCCchhhHHHhHhhcCCCccccccccccccccccCCCCCchHHHHhHHHHHHHHHHHHHhcccchhHHHH
Q 002641 603 TIVSLQGRFTTSGKSLTRAMLLKRAGVGKSYKNLTRTEQIGNICGEDDDTSEEEKAADDWERKMALVLVSHDFGLLFEAL 682 (897)
Q Consensus 603 ~l~~l~g~~s~sg~~~~~~~llk~ag~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~w~~k~a~~Li~~~~~~~L~al 682 (897)
+|..+ |.+-.-.+|++..+-.. |...++..|-..|....+.+|
T Consensus 215 aLg~~-------~~~~av~~Li~~L~~~~------------------------------~~~~a~~ALg~ig~~~a~p~L 257 (280)
T PRK09687 215 GLALR-------KDKRVLSVLIKELKKGT------------------------------VGDLIIEAAGELGDKTLLPVL 257 (280)
T ss_pred HHHcc-------CChhHHHHHHHHHcCCc------------------------------hHHHHHHHHHhcCCHhHHHHH
Confidence 77543 44556666666544221 223455666666766666666
Q ss_pred hhhhc-cchhh
Q 002641 683 EEGLN-SRFAE 692 (897)
Q Consensus 683 s~~l~-s~~~~ 692 (897)
..-+. ..++.
T Consensus 258 ~~l~~~~~d~~ 268 (280)
T PRK09687 258 DTLLYKFDDNE 268 (280)
T ss_pred HHHHhhCCChh
Confidence 65554 43333
No 476
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.69 E-value=56 Score=36.59 Aligned_cols=274 Identities=16% Similarity=0.207 Sum_probs=142.0
Q ss_pred HhccCChHHHHHHHHHHHHhhhccHHHHHHhhhccchHHHHHHHHhcCchHHHHHHHHh----------CCChhhHHHHh
Q 002641 322 LFNSVDPRVLEATIFLLSELGSRDKSVIHTLTRVESDVERIVALFKKGLLEAVVLIDLL----------RPSTRTLIEMD 391 (897)
Q Consensus 322 L~~sl~~~vlk~a~~~l~el~s~~e~~~~~i~~~~~~~~~i~~llk~~~~ea~~LL~~L----------~~~~~~i~~~~ 391 (897)
+.++-+.-+++.+...+..+......-.+ . ....-++++|...+.++.+++.-+ +-.-++++...
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpdl~d----a-~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPDLFD----A-EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcchhc----c-ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34444444577776666665443332111 0 112334455554444444433222 12346677788
Q ss_pred hHHHHHHHHHhhc-chhhhhccCchhhHHHHHHhhhcCCcccccc----cchhhhccchhHHHHHHhhhcchHHHHHHHH
Q 002641 392 MMESLMTVIKKKE-EDFLKMCLKPKSVSVLLLGQMIGDSEESIVS----SIANTIVSSKVFESVISSLEAEWAEERIAAV 466 (897)
Q Consensus 392 ~~~~Ll~~l~~~~-~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~----~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~ 466 (897)
.++.++++|..+. ++... ++..-|--+++.-|....- .||.+++.+|++..|++.+.+|---.-..-.
T Consensus 190 il~Li~~~l~~~gk~~~VR-------el~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l 262 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVR-------ELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSL 262 (461)
T ss_pred HHHHHHHHHcccCccHHHH-------HHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHH
Confidence 8888887776643 33110 1122233333333322221 6899999999999999999877432222212
Q ss_pred HHHhhhccccCcchhhHhhhcchhhHHHHHhh-cCcchhHHHHHHHHHHHhhchhhhhHHHHHHhhccCccchhhHHHHH
Q 002641 467 GILLRCMQEDGKCRNSIADKAELAPVMESFMA-ASDGERFEIVCFLSELVKLNRRTFNEQILHIIKDEGTYSSMHTLLVY 545 (897)
Q Consensus 467 ~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~l~el~~~~r~~~~~~~l~~i~~~g~~~~m~~l~~~ 545 (897)
..-+.=++....==..|++...+..+++++-+ +.+..|..+=..++-|..+- +...+-..|-+.|+....-+++..
T Consensus 263 ~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA---G~DsvKs~IV~~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 263 STTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA---GSDSVKSTIVEKGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh---CCCchHHHHHHhcChHHHHHHHHH
Confidence 22233333333323578999999999999988 56666755444444443332 122223445555555555555554
Q ss_pred HHhcCcCCcchHHHHHHhhhhhcCcccccccHH-HHHHHHHHHhhcCCch-HHHHHHHHHHHhcccccc
Q 002641 546 LQTANHDQCPVVAGLLLQLDLLAEPRKMSIYRE-EAIDTLISCLRNSDYP-AAQLAAAKTIVSLQGRFT 612 (897)
Q Consensus 546 l~~~~~~~~~~~a~lllqld~l~~~~~~s~~re-ea~~~~~~~l~~~~~~-~~q~~~~~~l~~l~g~~s 612 (897)
-+..|..=+-+.|.+ -.=-|-.|...-++-| -+-+..+++++..-.- -+|.+++-.+=|+..|-.
T Consensus 340 h~~~p~Vi~~~~a~i--~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAII--SILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred cCCChHHHHHHHHHH--HHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 444432211111111 1112344554433333 3556777788766533 488888887777666543
No 477
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=64.22 E-value=42 Score=42.16 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=69.1
Q ss_pred ecccccEEEEe-cCCCCeEEEeCC--cceeeccCCCCc-EEEEEEe-------CCEEEEEecCCeEEEEeCCCCcceeEE
Q 002641 781 LAFEMVKVLSN-GHDSSADFWNHR--ELVHVDSSENGK-VLSIACF-------RDKIFSGHSDGTIKVWTGRGSILHLIQ 849 (897)
Q Consensus 781 ~s~d~~~LaSg-s~DgtIklWd~~--~~l~~l~gH~~~-V~sV~fs-------pd~L~Sgs~DgtIrlWd~~~~~~~~i~ 849 (897)
|..+...|+.. .....+.-.|+. +++..+..|... |..++=. +..-+.|-+++.+-.||.+-..-+++.
T Consensus 489 ~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 489 HDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred hccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 33345555443 345667777776 788888877543 5555332 236788999999999999954212332
Q ss_pred E-ee--ccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 850 Q-IR--EHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 850 ~-l~--gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
. .+ ..+...+|++-..+| +||.||.+|.||+|| +.|
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g 607 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLG 607 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccc
Confidence 1 11 133467888887777 599999999999999 444
No 478
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=64.10 E-value=45 Score=39.21 Aligned_cols=103 Identities=16% Similarity=0.045 Sum_probs=52.4
Q ss_pred cceeEeeecccccEEEEecCCCCeEEE-eCC-cceeeccCCCCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFW-NHR-ELVHVDSSENGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQI 851 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklW-d~~-~~l~~l~gH~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l 851 (897)
....+.|.+ .+. +|.-...++|+++ +++ .....++.. ..+..+-. +..|+.. .++.|.+||..++ +.++.+
T Consensus 70 ~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~-G~LL~~~-~~~~i~~yDw~~~--~~i~~i 142 (443)
T PF04053_consen 70 SGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG-GNLLGVK-SSDFICFYDWETG--KLIRRI 142 (443)
T ss_dssp E-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE--SSSEEEE-ETTEEEEE-TTT----EEEEE
T ss_pred ceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc-CcEEEEE-CCCCEEEEEhhHc--ceeeEE
Confidence 444566666 343 5555557888885 554 222222221 12222211 3344444 4448999999998 567777
Q ss_pred eccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 002641 852 REHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 852 ~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~ 886 (897)
... +|..|.|+++|++++-.+.| ++.+++...
T Consensus 143 ~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 143 DVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred ecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 633 48999999999999988855 677776543
No 479
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.94 E-value=16 Score=46.51 Aligned_cols=99 Identities=13% Similarity=0.007 Sum_probs=69.9
Q ss_pred EEEEecCCCCeEEEeCC-------cceeeccCC------CCcEEEEEEeCC---EEEEEecCCeEEEEeCCCCcceeEEE
Q 002641 787 KVLSNGHDSSADFWNHR-------ELVHVDSSE------NGKVLSIACFRD---KIFSGHSDGTIKVWTGRGSILHLIQQ 850 (897)
Q Consensus 787 ~LaSgs~DgtIklWd~~-------~~l~~l~gH------~~~V~sV~fspd---~L~Sgs~DgtIrlWd~~~~~~~~i~~ 850 (897)
.++..+.+-.|..+|+. +.-..+.-| ..-+.++.|+|. ..+.+..|+.|+|..+.... ..+..
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~-~~v~s 194 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA-QNVTS 194 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh-hhhcc
Confidence 35555666678899976 112222222 345678899985 78889999999999887542 22333
Q ss_pred eeccCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCc
Q 002641 851 IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 851 l~gH~~~V~slafspdg~~L~SgS~D~tIrlWdi~~~ 887 (897)
+ .-+..+++++|+|.|..++.|-..|++.-|-..-.
T Consensus 195 ~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 195 F-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred c-CcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 2 35667899999999999999999999988765433
No 480
>PHA03096 p28-like protein; Provisional
Probab=63.92 E-value=3.9 Score=44.85 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=31.0
Q ss_pred ccccccccCCCCc--------eecCCCcccchHHHHHHHhcC--CCCCCCCCcc
Q 002641 164 FVCPITTHIFDDP--------VTLETGQTYERRAIQEWIERG--NSSCPITRQK 207 (897)
Q Consensus 164 l~CpIC~~l~~dP--------V~l~CGHtFCr~CI~~~~~~~--~~~CP~Cr~~ 207 (897)
-.|.||++.-.+- ..-.|-|.||-.||..|.... ...||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 5699999866532 233899999999999998742 2356666543
No 481
>PHA02713 hypothetical protein; Provisional
Probab=63.71 E-value=24 Score=42.84 Aligned_cols=65 Identities=8% Similarity=0.010 Sum_probs=43.1
Q ss_pred EeCCEEEEEecC------CeEEEEeCCC-CcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCc
Q 002641 821 CFRDKIFSGHSD------GTIKVWTGRG-SILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDK--TARVRSNDSF 887 (897)
Q Consensus 821 fspd~L~Sgs~D------gtIrlWd~~~-~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~--tIrlWdi~~~ 887 (897)
+...+.+.||.+ .++..||..+ +....+..+.........+.+ +|+..+.||.|+ ++-.||+.+.
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 333355566654 2467899987 554555555555554444444 689999999998 7888888876
No 482
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=62.29 E-value=94 Score=34.49 Aligned_cols=92 Identities=11% Similarity=0.101 Sum_probs=62.5
Q ss_pred CCCeEEEeCC-cc-eeeccCC--CCcEEEEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEee--ccCCCeEEEEEccCC
Q 002641 794 DSSADFWNHR-EL-VHVDSSE--NGKVLSIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIR--EHTKAVTGLAILQSG 867 (897)
Q Consensus 794 DgtIklWd~~-~~-l~~l~gH--~~~V~sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~--gH~~~V~slafspdg 867 (897)
.+.|.+|++. .. +.....+ ...|.++....++++.|.....+.++..+... ..+..+. ....+++++.|-+++
T Consensus 106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~-~~l~~va~d~~~~~v~~~~~l~d~ 184 (321)
T PF03178_consen 106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN-NKLILVARDYQPRWVTAAEFLVDE 184 (321)
T ss_dssp TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT-E-EEEEEEESS-BEEEEEEEE-SS
T ss_pred cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC-CEEEEEEecCCCccEEEEEEecCC
Confidence 4889999987 22 2222222 44788998889999999988888877554321 1122222 234568899998777
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 002641 868 EMLYSGSLDKTARVRSNDS 886 (897)
Q Consensus 868 ~~L~SgS~D~tIrlWdi~~ 886 (897)
+.++.+..+|.+.++....
T Consensus 185 ~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 185 DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SEEEEEETTSEEEEEEE-S
T ss_pred cEEEEEcCCCeEEEEEECC
Confidence 8999999999999988763
No 483
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.93 E-value=13 Score=38.67 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=35.0
Q ss_pred cccccccCCC--CceecCCCcccchHHHHHHHhc-------CCCCCCCCCccc
Q 002641 165 VCPITTHIFD--DPVTLETGQTYERRAIQEWIER-------GNSSCPITRQKL 208 (897)
Q Consensus 165 ~CpIC~~l~~--dPV~l~CGHtFCr~CI~~~~~~-------~~~~CP~Cr~~~ 208 (897)
-|.+|..-+. |-+.+-|-|.|-..|+.+|-.. ....||.|.+++
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 4888887775 5677899999999999998763 145799998875
No 484
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=61.65 E-value=95 Score=33.48 Aligned_cols=108 Identities=10% Similarity=-0.036 Sum_probs=59.5
Q ss_pred ceeEeeecccccEEEEec---CCCCeEEEeCCc-ceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEe-CCCCccee
Q 002641 775 LRKYSPLAFEMVKVLSNG---HDSSADFWNHRE-LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWT-GRGSILHL 847 (897)
Q Consensus 775 ~~~~~~~s~d~~~LaSgs---~DgtIklWd~~~-~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd-~~~~~~~~ 847 (897)
.......++++..++... ....+.++.... ....+.+ ..+..-.|+++ ..+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 344556777787665544 224455555542 2222233 26677788886 444445566667663 33332122
Q ss_pred EEE-eeccCCCeEEEEEccCCCEEEEEe---CCCcEEEEeC
Q 002641 848 IQQ-IREHTKAVTGLAILQSGEMLYSGS---LDKTARVRSN 884 (897)
Q Consensus 848 i~~-l~gH~~~V~slafspdg~~L~SgS---~D~tIrlWdi 884 (897)
+.. ..+-...|+.+.+||||..++--. .++.|.+=-+
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 222 111122899999999998777665 3456665543
No 485
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=60.86 E-value=8.4 Score=29.79 Aligned_cols=39 Identities=10% Similarity=0.306 Sum_probs=23.8
Q ss_pred ccccccCCCCceecC---CCcccchHHHHHHHhcCCC-CCCCC
Q 002641 166 CPITTHIFDDPVTLE---TGQTYERRAIQEWIERGNS-SCPIT 204 (897)
Q Consensus 166 CpIC~~l~~dPV~l~---CGHtFCr~CI~~~~~~~~~-~CP~C 204 (897)
|.+|.++...-+.=+ |+-.+=..|+..||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888777643 8888889999999985433 69987
No 486
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=60.60 E-value=4.1 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCCceecCCC-cccchHHHHHHHhcCCCCCCCCCcccCC
Q 002641 173 FDDPVTLETG-QTYERRAIQEWIERGNSSCPITRQKLSS 210 (897)
Q Consensus 173 ~~dPV~l~CG-HtFCr~CI~~~~~~~~~~CP~Cr~~~~~ 210 (897)
|.+--.+.|. |-.|..|+...+.. ...||+|+.+++.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 3444455555 88899999988774 4489999998764
No 487
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=59.95 E-value=28 Score=42.95 Aligned_cols=101 Identities=7% Similarity=0.047 Sum_probs=68.0
Q ss_pred cccEEEEecCCCCeEEEeCCcce---e-----------------eccC-CCCcEEEEEEe--CC--EEEEEecCCeEEEE
Q 002641 784 EMVKVLSNGHDSSADFWNHRELV---H-----------------VDSS-ENGKVLSIACF--RD--KIFSGHSDGTIKVW 838 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~~~l---~-----------------~l~g-H~~~V~sV~fs--pd--~L~Sgs~DgtIrlW 838 (897)
+...|+.+.+||.|.+|.+.... . -+.- -...+|.++++ .. +||.+++...|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 34568889999999999864100 0 0111 24579999998 43 88888889999988
Q ss_pred eCCCCccee-EEEeeccCCCeEEEEEccC-----CC-EEEEEeCCCcEEEEeC
Q 002641 839 TGRGSILHL-IQQIREHTKAVTGLAILQS-----GE-MLYSGSLDKTARVRSN 884 (897)
Q Consensus 839 d~~~~~~~~-i~~l~gH~~~V~slafspd-----g~-~L~SgS~D~tIrlWdi 884 (897)
-......+. ...-..|...|-+|+|-++ |. .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 766421011 1111125567889999765 32 7888999999999888
No 488
>PRK09687 putative lyase; Provisional
Probab=59.47 E-value=2.7e+02 Score=30.53 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=70.2
Q ss_pred HHHHHHHhcC----chHHHHHHHHhCCChhhHHHHhhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccc
Q 002641 360 ERIVALFKKG----LLEAVVLIDLLRPSTRTLIEMDMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVS 435 (897)
Q Consensus 360 ~~i~~llk~~----~~ea~~LL~~L~~~~~~i~~~~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~ 435 (897)
..+..+++.. ...|...|.+|...+.- ....++.|...+.+.++.. =..+|+..|..+=..-
T Consensus 57 ~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~L~~l~~~D~d~~------VR~~A~~aLG~~~~~~------ 122 (280)
T PRK09687 57 RLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNILNNLALEDKSAC------VRASAINATGHRCKKN------ 122 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHhcCCCHH------HHHHHHHHHhcccccc------
Confidence 3444555554 34445567777653321 2344555665544433320 1234444454441100
Q ss_pred cchhhhccchhHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHH
Q 002641 436 SIANTIVSSKVFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (897)
Q Consensus 436 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el 514 (897)
..-.+.++..+...+...+.+.|..++.-|- .+ .+...+.+++.+|...+...|..++..|-.+
T Consensus 123 ----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg-------~~----~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 123 ----PLYSPKIVEQSQITAFDKSTNVRFAVAFALS-------VI----NDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ----cccchHHHHHHHHHhhCCCHHHHHHHHHHHh-------cc----CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 0113445666777777778888888777662 22 2344677888888877777788888777776
No 489
>PLN02189 cellulose synthase
Probab=58.95 E-value=6.4 Score=49.90 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=35.7
Q ss_pred ccccccccCCC-----Cceec--CCCcccchHHHHHHHhcCCCCCCCCCcccC
Q 002641 164 FVCPITTHIFD-----DPVTL--ETGQTYERRAIQEWIERGNSSCPITRQKLS 209 (897)
Q Consensus 164 l~CpIC~~l~~-----dPV~l--~CGHtFCr~CI~~~~~~~~~~CP~Cr~~~~ 209 (897)
-.|.||++-.- +|-+. .||--.||.|.+-=.+.++..||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 38999999753 45544 699999999995444567889999998876
No 490
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.76 E-value=1e+02 Score=33.50 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=62.1
Q ss_pred cccEEEEecCCCCeEEEeCC--cceeeccCCC-CcEE-EEEEeCCEEEEEecCCeEEEEeCCCCcceeEEEeeccCCCeE
Q 002641 784 EMVKVLSNGHDSSADFWNHR--ELVHVDSSEN-GKVL-SIACFRDKIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVT 859 (897)
Q Consensus 784 d~~~LaSgs~DgtIklWd~~--~~l~~l~gH~-~~V~-sV~fspd~L~Sgs~DgtIrlWd~~~~~~~~i~~l~gH~~~V~ 859 (897)
-|++++-|.+.|.+.+.+++ .....+.... -.+. .++|+...+..|+.|++...-|.++. .++...+.-.+...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~--~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY--GCVYKSKCGGGTFV 139 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc--ceEEecccCCceec
Confidence 36779999999999888876 3444444321 1122 23445559999999999999999987 46666654444334
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 860 GLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 860 slafspdg~~L~SgS~D~tIrlWdi 884 (897)
+-+..|....|+.++..|.+.--+.
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred cceecCCCceEEEEeccceEEEEcc
Confidence 4455563344555555555443333
No 491
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=58.59 E-value=88 Score=36.00 Aligned_cols=107 Identities=7% Similarity=0.011 Sum_probs=61.3
Q ss_pred EeeecccccEEEEe-cCC----CCeEEEeCC--ccee-eccCCCCcEEEEEEeCC---EEEEEec----------CCeEE
Q 002641 778 YSPLAFEMVKVLSN-GHD----SSADFWNHR--ELVH-VDSSENGKVLSIACFRD---KIFSGHS----------DGTIK 836 (897)
Q Consensus 778 ~~~~s~d~~~LaSg-s~D----gtIklWd~~--~~l~-~l~gH~~~V~sV~fspd---~L~Sgs~----------DgtIr 836 (897)
...++++|+++|-+ +.. .+++++|+. +.+. .+.. ..-.++.|.+| ++++... ...|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 45678899987643 333 458999986 2222 1111 11223999987 4444422 23488
Q ss_pred EEeCCCCcceeEEEeeccCCC--eEEEEEccCCCEEEEEeC-C---CcEEEEeCCC
Q 002641 837 VWTGRGSILHLIQQIREHTKA--VTGLAILQSGEMLYSGSL-D---KTARVRSNDS 886 (897)
Q Consensus 837 lWd~~~~~~~~i~~l~gH~~~--V~slafspdg~~L~SgS~-D---~tIrlWdi~~ 886 (897)
.|++.+........|.+.... ...+..++||++++..+. . ..+.+-|...
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 899887753434556554443 567889999998775443 2 2356667665
No 492
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.37 E-value=48 Score=39.13 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=63.9
Q ss_pred cccE-EEEecCCCCeEEEeCC--cceeeccCCCCcEEEEEEeCC---------EEEEEecCCeEEEEeCCCCcceeEEEe
Q 002641 784 EMVK-VLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD---------KIFSGHSDGTIKVWTGRGSILHLIQQI 851 (897)
Q Consensus 784 d~~~-LaSgs~DgtIklWd~~--~~l~~l~gH~~~V~sV~fspd---------~L~Sgs~DgtIrlWd~~~~~~~~i~~l 851 (897)
+.+. +.++..-..+.-.|+. +.+..+.-|.. |.-+.+.|+ .=+.|=+|..|.-||.+-.....+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4443 3445555566656665 67777777766 677777774 234577889999999985432223333
Q ss_pred eccC----CCeEEEEEccCCCEEEEEeCCCcEEEEeC
Q 002641 852 REHT----KAVTGLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 852 ~gH~----~~V~slafspdg~~L~SgS~D~tIrlWdi 884 (897)
.+|. ....|.+--.+| +|+.||.+|.||+||-
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh
Confidence 3332 235566665555 6999999999999995
No 493
>PRK13616 lipoprotein LpqB; Provisional
Probab=58.19 E-value=52 Score=40.22 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=54.5
Q ss_pred eeEeeecccccEEEEec------CCCCeEEE--eCC-cceeeccCCCCcEEEEEEeCC--EEEEEecC------------
Q 002641 776 RKYSPLAFEMVKVLSNG------HDSSADFW--NHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSD------------ 832 (897)
Q Consensus 776 ~~~~~~s~d~~~LaSgs------~DgtIklW--d~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~D------------ 832 (897)
.....++++|..++..- .|..-.|| +.. .......+. ..+.-.|+|| .+.+.+..
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 34455677888765544 34444445 444 222222332 3677888886 44444322
Q ss_pred CeEEEEeCCCCcceeEEEeeccCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 002641 833 GTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARV 881 (897)
Q Consensus 833 gtIrlWd~~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~D~tIrl 881 (897)
+.+.+.++..+... . ...+.|..+.|||||..++-.. +++|.+
T Consensus 430 gql~~~~vd~ge~~--~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 430 GQLARTPVDASAVA--S---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ceEEEEeccCchhh--h---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 23333344443211 1 2345799999999999887766 466665
No 494
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.96 E-value=3.1e+02 Score=35.43 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=36.3
Q ss_pred hHHHHHHhhhcchHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHH
Q 002641 446 VFESVISSLEAEWAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSEL 514 (897)
Q Consensus 446 ~~~~l~~~~~~~~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el 514 (897)
....|+..++..+...|..++.-|-.- .....++.+|...+...|..+...|..+
T Consensus 715 ~~~~l~~~L~D~d~~VR~~Av~aL~~~--------------~~~~~l~~~l~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 715 DAALFAAALGDPDHRVRIEAVRALVSV--------------DDVESVAGAATDENREVRIAVAKGLATL 769 (897)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHhcc--------------cCcHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 345677788888888888776665531 1234566777777777777776666554
No 495
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=57.76 E-value=57 Score=39.91 Aligned_cols=59 Identities=14% Similarity=0.291 Sum_probs=44.0
Q ss_pred EEEEEecC-CeEEEEeCCCCcceeEEEeeccCCCeEEEEEc--cCCCEEEEEeCCCcEEEEeC
Q 002641 825 KIFSGHSD-GTIKVWTGRGSILHLIQQIREHTKAVTGLAIL--QSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 825 ~L~Sgs~D-gtIrlWd~~~~~~~~i~~l~gH~~~V~slafs--pdg~~L~SgS~D~tIrlWdi 884 (897)
.++....+ .++.|||.+.+.+..-..| ...+.|..+.|. |+|+.+++.|.++.|.++.-
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 33443444 5789999998864444555 456789999995 68999999999999999853
No 496
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=57.26 E-value=7.2 Score=44.12 Aligned_cols=34 Identities=26% Similarity=0.580 Sum_probs=24.2
Q ss_pred cCCCcccch-----HHHHHHHhc------------CCCCCCCCCcccCCCC
Q 002641 179 LETGQTYER-----RAIQEWIER------------GNSSCPITRQKLSSTK 212 (897)
Q Consensus 179 l~CGHtFCr-----~CI~~~~~~------------~~~~CP~Cr~~~~~~~ 212 (897)
-+|+.-||| .|+-+|+.. +..+||.||+.+...+
T Consensus 304 ~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 304 PPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 356666655 899999863 2347999999876544
No 497
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.76 E-value=1.9e+02 Score=32.10 Aligned_cols=174 Identities=11% Similarity=0.143 Sum_probs=93.5
Q ss_pred HHHHHHHHhcc-CChHHHHHHHHHHHHhhhccHHHHHHhhhcc---c--hHHHHHHHHhcC----chHHHHHHHHhCCCh
Q 002641 315 INGFVEILFNS-VDPRVLEATIFLLSELGSRDKSVIHTLTRVE---S--DVERIVALFKKG----LLEAVVLIDLLRPST 384 (897)
Q Consensus 315 ~~~~ke~L~~s-l~~~vlk~a~~~l~el~s~~e~~~~~i~~~~---~--~~~~i~~llk~~----~~ea~~LL~~L~~~~ 384 (897)
+..+...|... -..++++-....+.++...+....+.+.... . ...-++.++.++ ...|..+|..|-...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 34445555555 6778888888888888887776555444322 1 345566666555 566666777765554
Q ss_pred hhHHHH---hhHHHHHHHHHhhcchhhhhccCchhhHHHHHHhhhcCCcccccccchhhhccchhHHHHHHhhh-----c
Q 002641 385 RTLIEM---DMMESLMTVIKKKEEDFLKMCLKPKSVSVLLLGQMIGDSEESIVSSIANTIVSSKVFESVISSLE-----A 456 (897)
Q Consensus 385 ~~i~~~---~~~~~Ll~~l~~~~~~~~~~~~~p~~aa~~~~~~~l~~~d~~~~~~~~~~~~s~~~~~~l~~~~~-----~ 456 (897)
...... +.++.++..|++.... ... .=...|+-.|..++. +..+|......++++.+++.++ .
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~-~~~--~~~~~av~~L~~LL~------~~~~R~~f~~~~~v~~l~~iL~~~~~~~ 207 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSS-SDS--ELQYIAVQCLQNLLR------SKEYRQVFWKSNGVSPLFDILRKQATNS 207 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-H-HHH-----HHHHHHHHHHHT------SHHHHHHHHTHHHHHHHHHHHH------
T ss_pred CccccchHHHHHHHHHHHHHHhhcC-CCc--chHHHHHHHHHHHhC------cchhHHHHHhcCcHHHHHHHHHhhcccC
Confidence 444444 8889999999872111 000 001455666666663 3357888888999999999992 2
Q ss_pred chHHHHHHH-HHHHhhhccccCcchhhHhhhcchhhHHHHHh
Q 002641 457 EWAEERIAA-VGILLRCMQEDGKCRNSIADKAELAPVMESFM 497 (897)
Q Consensus 457 ~~~~~~~~~-~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~ 497 (897)
+...-...= +-+.+-++.++...-..+.+..-+..++++++
T Consensus 208 ~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~ 249 (312)
T PF03224_consen 208 NSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILK 249 (312)
T ss_dssp ---HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHH
Confidence 211111110 11224456677777767766664444444433
No 498
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=56.66 E-value=24 Score=39.93 Aligned_cols=89 Identities=7% Similarity=-0.112 Sum_probs=52.3
Q ss_pred CCCeEEEeCC-cceeeccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCCCcceeEEEeec-------c---------
Q 002641 794 DSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIRE-------H--------- 854 (897)
Q Consensus 794 DgtIklWd~~-~~l~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~~~~~~i~~l~g-------H--------- 854 (897)
.+.+.+||+. .....+......+....|+|+ .++-. .|+-|.+++..++.... -+..| -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEE-eccccceeEEcCccceeccccc
Confidence 3467788887 444444444678889999997 44443 46789999887763111 12222 0
Q ss_pred CCCeEEEEEccCCCEEEEEeCC-CcEEEEeC
Q 002641 855 TKAVTGLAILQSGEMLYSGSLD-KTARVRSN 884 (897)
Q Consensus 855 ~~~V~slafspdg~~L~SgS~D-~tIrlWdi 884 (897)
-+.-..+.|||||++|+....| ..|+.+.+
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 1223567899999999888654 45554443
No 499
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=56.33 E-value=1.2e+02 Score=32.91 Aligned_cols=150 Identities=17% Similarity=0.097 Sum_probs=91.0
Q ss_pred ccchhHHHHHHhhhcc-hHHHHHHHHHHHhhhccccCcchhhHhhhcchhhHHHHHhhcCcchhHHHHHHHHHHHhhchh
Q 002641 442 VSSKVFESVISSLEAE-WAEERIAAVGILLRCMQEDGKCRNSIADKAELAPVMESFMAASDGERFEIVCFLSELVKLNRR 520 (897)
Q Consensus 442 ~s~~~~~~l~~~~~~~-~~~~~~~~~~il~~c~~~~~~cr~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~el~~~~r~ 520 (897)
.+.+.+..|+..|+.. +..-+-.+ -+.+....+-...|..|.+.+.+..+..+|...+...|..|+..|.-|.-....
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~a-l~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKA-LIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHH-HHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 6778899999999943 44333332 245555688889999999999999999999999999998888888766443221
Q ss_pred hhhHHHHHHhhccCccchhhHHHHHH--HhcCcCC--cchHHHHHHhhhhhcCcccccccHHHHHHHHHHHhhcCCchHH
Q 002641 521 TFNEQILHIIKDEGTYSSMHTLLVYL--QTANHDQ--CPVVAGLLLQLDLLAEPRKMSIYREEAIDTLISCLRNSDYPAA 596 (897)
Q Consensus 521 ~~~~~~l~~i~~~g~~~~m~~l~~~l--~~~~~~~--~~~~a~lllqld~l~~~~~~s~~reea~~~~~~~l~~~~~~~~ 596 (897)
. ..|+ +|+-.++- .+.+.+. |-..-.+|.+|-+-.+-+. +.+ ..+-.++.-|. +....+
T Consensus 88 ~------~~Ik-------~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~--~l~-~~i~~ll~LL~-~G~~~~ 150 (254)
T PF04826_consen 88 Q------EQIK-------MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH--MLA-NYIPDLLSLLS-SGSEKT 150 (254)
T ss_pred H------HHHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh--hHH-hhHHHHHHHHH-cCChHH
Confidence 1 1121 11211111 1111111 1122345555533222222 222 25666766555 445578
Q ss_pred HHHHHHHHHhccc
Q 002641 597 QLAAAKTIVSLQG 609 (897)
Q Consensus 597 q~~~~~~l~~l~g 609 (897)
|.++.+.|++|.-
T Consensus 151 k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 151 KVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHHHHHhcc
Confidence 8899999998754
No 500
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.26 E-value=16 Score=44.14 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=52.6
Q ss_pred cceeEeeecccccEEEEecCCCCeEEEeCC-----ccee---eccCCCCcEEEEEEeCC--EEEEEecCCeEEEEeCCC
Q 002641 774 ELRKYSPLAFEMVKVLSNGHDSSADFWNHR-----ELVH---VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRG 842 (897)
Q Consensus 774 ~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-----~~l~---~l~gH~~~V~sV~fspd--~L~Sgs~DgtIrlWd~~~ 842 (897)
.......++.+..++|.|+..|.|.++-+. .... -.+.|...|++++|++| .+++|..-|+|.+-.+..
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 444555667777888999999999988765 1111 12236789999999998 999999999998877766
Done!