Query 002641
Match_columns 897
No_of_seqs 548 out of 4012
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 15:46:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002641.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1361-1364//hhsearch_pdb/002641hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 154.0 16.8 134 758-893 211-377 (410)
2 4gqb_B Methylosome protein 50; 1.0 1 1 151.1 17.9 128 757-887 188-332 (344)
3 1vyh_C Platelet-activating fac 1.0 1 1 148.6 18.8 126 758-885 253-410 (410)
4 2ynn_A Coatomer subunit beta'; 1.0 1 1 147.7 17.2 136 757-894 115-268 (304)
5 1nr0_A Actin interacting prote 1.0 1 1 147.7 17.9 126 759-885 468-610 (611)
6 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 147.1 15.4 122 771-894 486-673 (902)
7 3ow8_A WD repeat-containing pr 1.0 1 1 145.6 18.2 112 771-884 204-319 (321)
8 1nr0_A Actin interacting prote 1.0 1 1 145.5 19.0 114 772-887 447-568 (611)
9 2ymu_A WD-40 repeat protein; u 1.0 1 1 145.5 18.2 113 768-883 462-577 (577)
10 3frx_A Guanine nucleotide-bind 1.0 1 1 145.0 18.4 134 758-893 84-235 (319)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=153.95 Aligned_cols=134 Identities=22% Similarity=0.253 Sum_probs=104.5
Q ss_pred CCCCCEEEEECC--------CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC---
Q ss_conf 777732442100--------2343550673303456089973089976898088--640221479985799999099---
Q 002641 758 LRDINIHMKDIM--------KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--- 824 (897)
Q Consensus 758 ~~d~~~~~~~i~--------~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--- 824 (897)
..|.++.+|++. .+|...+....+++++.++++|+.|++|++||+. +....+.+|...|.++.|+|+
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred ECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf 68996999989999489999278862899999899999999918990999989897436673378745899998586554
Q ss_pred -------------------EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf -------------------7999754990999957888520388860368886899991699999999589949999588
Q 002641 825 -------------------KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 825 -------------------~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~ 885 (897)
++++|+.|++|++||++++ .++..+.+|...|++++|+|+|+++++|+.|++|++||+.
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred CCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC--CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 31012125555566788889999938984999988999--6699997788858999994998999999597929999899
Q ss_pred CC-CCEEEE
Q ss_conf 76-400120
Q 002641 886 SF-TYAIFI 893 (897)
Q Consensus 886 t~-~l~~l~ 893 (897)
++ .+.++.
T Consensus 369 ~~~~~~~~~ 377 (410)
T 1vyh_C 369 NKRCMKTLN 377 (410)
T ss_dssp TSCCCEEEE
T ss_pred CCCEEEEEC
T ss_conf 990689984
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=151.12 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=100.2
Q ss_pred CCCCCCEEEEECCCCC----------CCCEEEEEE-CCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEEC
Q ss_conf 8777732442100234----------355067330-3456089973089976898088--64022147998579999909
Q 002641 757 GLRDINIHMKDIMKGL----------RELRKYSPL-AFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFR 823 (897)
Q Consensus 757 ~~~d~~~~~~~i~~~~----------~~~~~~~~~-s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fsp 823 (897)
+..|.++++|++..+. ...+....+ +.++.++++|+.|++|++||+. +.+..+.+|.+.|++++|+|
T Consensus 188 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp 267 (344)
T 4gqb_B 188 CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP 267 (344)
T ss_dssp EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS
T ss_pred ECCCCCCCCCCCCCCCEEEEEECCEEECCCEEEEECCCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECC
T ss_conf 03443551023445520011101000012123566179996058861587189898999959899837889988999926
Q ss_pred C---EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCC
Q ss_conf 9---79997549909999578885203888603688868999916999-9999958994999958876
Q 002641 824 D---KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGE-MLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 824 d---~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~-~L~SgS~DgtIriWDi~t~ 887 (897)
+ +|+||+.|++|++||+.++. +..+.+|.+.|++++|+|++. +++|||.|++|++|++.+.
T Consensus 268 ~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 268 HSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCEEEEEEECCCEEEEEECCCCC---EEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCC
T ss_conf 999099999389949999999996---99972889977899991799969999937995999989998
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=148.60 Aligned_cols=126 Identities=19% Similarity=0.274 Sum_probs=103.0
Q ss_pred CCCCCEEEEECC--------CCCCCCEEEEEECCC--------------------CCEEEEECCCCCEEEEECC--CCEE
Q ss_conf 777732442100--------234355067330345--------------------6089973089976898088--6402
Q 002641 758 LRDINIHMKDIM--------KGLRELRKYSPLAFE--------------------MVKVLSNGHDSSADFWNHR--ELVH 807 (897)
Q Consensus 758 ~~d~~~~~~~i~--------~~~~~~~~~~~~s~d--------------------~~~LaSgs~DgtIklWd~~--~~~~ 807 (897)
..+.++.+|+.. .+|...+....++++ +.++++|+.|++|++||+. ..+.
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 18990999989897436673378745899998586554310121255555667888899999389849999889996699
Q ss_pred ECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 21479985799999099--7999754990999957888520388860368886899991699999999589949999588
Q 002641 808 VDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 808 ~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~ 885 (897)
.+.+|.+.|.++.|+|+ ++++|+.|++|++||+.++ +++..+.+|...|++++|+|++.++++||.|++|++|+++
T Consensus 333 ~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS--CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 99778885899999499899999959792999989999--0689984777868999982899999999279948997379
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=147.68 Aligned_cols=136 Identities=15% Similarity=0.251 Sum_probs=111.0
Q ss_pred CCCCCCEEEEEC---------CCCCCCCEEEEEECC-CCCEEEEECCCCCEEEEECC--CC-EEECCCCCCCEEEEEEEC
Q ss_conf 877773244210---------023435506733034-56089973089976898088--64-022147998579999909
Q 002641 757 GLRDINIHMKDI---------MKGLRELRKYSPLAF-EMVKVLSNGHDSSADFWNHR--EL-VHVDSSENGKVLSIACFR 823 (897)
Q Consensus 757 ~~~d~~~~~~~i---------~~~~~~~~~~~~~s~-d~~~LaSgs~DgtIklWd~~--~~-~~~l~gH~~~V~sV~fsp 823 (897)
+..|.++.+|+. ..+|...+....+++ ++..+++|+.|++|++||+. .. .....+|...+..+.|+|
T Consensus 115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC
T ss_pred ECCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCEEEEEEEE
T ss_conf 87998199998999922310105668957999988899998999918983999989999766332168747577899998
Q ss_pred --C--EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEEC
Q ss_conf --9--799975499099995788852038886036888689999169999999958994999958876-4001203
Q 002641 824 --D--KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFIQ 894 (897)
Q Consensus 824 --d--~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~~ 894 (897)
+ ++++|+.|++|++||++++ .++..+.+|...|++++|+|++..|+||+.|++|++||+.++ ....+..
T Consensus 195 ~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~ 268 (304)
T 2ynn_A 195 LPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268 (304)
T ss_dssp STTCCEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCCCCEEEEECCCCEEEEEECCCC--CCCEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCC
T ss_conf 699999999869991999967898--60246479888889999889999899993899599998998714564468
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=147.68 Aligned_cols=126 Identities=15% Similarity=0.162 Sum_probs=92.4
Q ss_pred CCCCEEEEECC---------CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC---CCEEE--CCCCCCCEEEEEEECC
Q ss_conf 77732442100---------2343550673303456089973089976898088---64022--1479985799999099
Q 002641 759 RDINIHMKDIM---------KGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR---ELVHV--DSSENGKVLSIACFRD 824 (897)
Q Consensus 759 ~d~~~~~~~i~---------~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~---~~~~~--l~gH~~~V~sV~fspd 824 (897)
.+.++++|+.. .+|...+..+.+++++.++++++.|++|++|+.. +.... +.+|.+.|++++|+||
T Consensus 468 ~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd 547 (611)
T 1nr0_A 468 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 547 (611)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCC
T ss_conf 99739999945992224101577886079999899998999948998999885778722321026404664258998998
Q ss_pred --EEEEEECCCEEEEEECCCCCCEEEEEEECC-CCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf --799975499099995788852038886036-8886899991699999999589949999588
Q 002641 825 --KIFSGHSDGTIKVWTGRGSILHLIQQIREH-TKAVTGLAILQSGEMLYSGSLDKTARVRSND 885 (897)
Q Consensus 825 --~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH-~~~V~slafspdg~~L~SgS~DgtIriWDi~ 885 (897)
+|+||+.|++|++|++..+.......+.+| ...|++++|+|+++ |+||+.|++|++|++.
T Consensus 548 g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 548 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 99799997997299997887555632644467656711899858997-9995288778998444
No 6
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=147.09 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=103.2
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCCEEEEECC-C---------------------------------------------
Q ss_conf 343550673303456089973089976898088-6---------------------------------------------
Q 002641 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-E--------------------------------------------- 804 (897)
Q Consensus 771 ~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~--------------------------------------------- 804 (897)
+|...+..+.+++++.+||+|+.|++|++|++. .
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88876469996389996999945857999992486555754557786651134551346796543224236898877760
Q ss_pred -CEEECCCCCCCEEEEEEECC-EEEEEECCCEEEEEECCCCCCEEEE-----EEE-CCCCCEEEEEEC-----CCC---C
Q ss_conf -40221479985799999099-7999754990999957888520388-----860-368886899991-----699---9
Q 002641 805 -LVHVDSSENGKVLSIACFRD-KIFSGHSDGTIKVWTGRGSILHLIQ-----QIR-EHTKAVTGLAIL-----QSG---E 868 (897)
Q Consensus 805 -~~~~l~gH~~~V~sV~fspd-~L~Sgs~DgtIkiWdl~~~~~~~i~-----~l~-gH~~~V~slafs-----pdg---~ 868 (897)
.+.++.+|.+.|++++|+|| ++++|+.|++|++||+.+.. .+. .+. +|...|++++|+ ||| .
T Consensus 566 ~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~--~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPA--IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTE--EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCE--EEEEEEHHHHCCCCCCCEEEEEEEEEECCCCCCCCE
T ss_conf 146999868886779996487689999589769999888983--999702467264666613999999984178987633
Q ss_pred EEEEEECCCCEEEEEC---CCC-CCEEEEC
Q ss_conf 9999958994999958---876-4001203
Q 002641 869 MLYSGSLDKTARVRSN---DSF-TYAIFIQ 894 (897)
Q Consensus 869 ~L~SgS~DgtIriWDi---~t~-~l~~l~~ 894 (897)
+|++|+.|++|++||+ .+| ....|..
T Consensus 644 ~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~ 673 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKILPASGGKFDVQLMD 673 (902)
T ss_dssp EEEEEETTSEEEEEEEEECGGGCEEEEEEE
T ss_pred EEEEEECCCCEEEEEEECCCCCCEEEEECC
T ss_conf 899995687399999955899868999667
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=145.58 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=58.4
Q ss_pred CCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCCE
Q ss_conf 343550673303456089973089976898088--640221479985799999099--7999754990999957888520
Q 002641 771 GLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR--ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSILH 846 (897)
Q Consensus 771 ~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~--~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~~ 846 (897)
+|...+....+++++.++++|+.|++|++||+. .....+.+|.+.|.+++|+|+ ++++|+.|++|++||+.++ .
T Consensus 204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--~ 281 (321)
T 3ow8_A 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--T 281 (321)
T ss_dssp CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--E
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC--E
T ss_conf 25896018999489998999909980999878996325898688882689999799998999818980999949998--8
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 38886036888689999169999999958994999958
Q 002641 847 LIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSN 884 (897)
Q Consensus 847 ~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi 884 (897)
++..+.+|...|++++|+|+|..|++++.|++|++||.
T Consensus 282 ~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 282 CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 88898378773899999899999999758980899957
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=145.54 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=97.2
Q ss_pred CCCCEEEEEECCCCCEEEEECCCCCEEEEECC-C---CEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCCC
Q ss_conf 43550673303456089973089976898088-6---40221479985799999099--799975499099995788852
Q 002641 772 LRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-E---LVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSIL 845 (897)
Q Consensus 772 ~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~---~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~~ 845 (897)
+...+....+++++.++++|+.|++|++||+. . .... .+|.+.|.+++|+|| ++++++.|++|++|++.+..
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~- 524 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF- 524 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-
T ss_pred CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC-
T ss_conf 68895499992899899996899739999945992224101-5778860799998999989999489989998857787-
Q ss_pred EEEEE--EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 03888--6036888689999169999999958994999958876
Q 002641 846 HLIQQ--IREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF 887 (897)
Q Consensus 846 ~~i~~--l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~ 887 (897)
.+... +.+|...|++++|+|+|++|+|||.|++|++||+.++
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC
T ss_conf 22321026404664258998998997999979972999978875
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=145.46 Aligned_cols=113 Identities=25% Similarity=0.421 Sum_probs=97.3
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC-CCEEECCCCCCCEEEEEEECC--EEEEEECCCEEEEEECCCCC
Q ss_conf 002343550673303456089973089976898088-640221479985799999099--79997549909999578885
Q 002641 768 IMKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD--KIFSGHSDGTIKVWTGRGSI 844 (897)
Q Consensus 768 i~~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~~~~l~gH~~~V~sV~fspd--~L~Sgs~DgtIkiWdl~~~~ 844 (897)
...+|...+....+++++.++++++.|++|++||.. +.+..+.+|.+.|.+++|+|| +|++++.|++|++||...
T Consensus 462 ~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-- 539 (577)
T 2ymu_A 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-- 539 (577)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC--
T ss_conf 972789977899996999999999198979999399978999867999989999918999999998969999996999--
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 203888603688868999916999999995899499995
Q 002641 845 LHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRS 883 (897)
Q Consensus 845 ~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWD 883 (897)
+++..+.+|...|++++|+|||++|+|+|.|++|++||
T Consensus 540 -~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 540 -QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf -78989718888878999968999999990899999969
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=1.00 E-value=1 Score=145.03 Aligned_cols=134 Identities=13% Similarity=0.190 Sum_probs=105.8
Q ss_pred CCCCCEEEEEC--------CCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC-CCEEECCCCCCCEEEEEEECC----
Q ss_conf 77773244210--------02343550673303456089973089976898088-640221479985799999099----
Q 002641 758 LRDINIHMKDI--------MKGLRELRKYSPLAFEMVKVLSNGHDSSADFWNHR-ELVHVDSSENGKVLSIACFRD---- 824 (897)
Q Consensus 758 ~~d~~~~~~~i--------~~~~~~~~~~~~~s~d~~~LaSgs~DgtIklWd~~-~~~~~l~gH~~~V~sV~fspd---- 824 (897)
..|.++++|++ +.+|...+....+++++.++++|+.|++|++||++ ..+..+.+|...|.++.|+|+
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC----
T ss_pred ECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 38998999989989704897367996899999699999999948992999977998089984267858978982688888
Q ss_pred ----EEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCEEEE
Q ss_conf ----799975499099995788852038886036888689999169999999958994999958876-400120
Q 002641 825 ----KIFSGHSDGTIKVWTGRGSILHLIQQIREHTKAVTGLAILQSGEMLYSGSLDKTARVRSNDSF-TYAIFI 893 (897)
Q Consensus 825 ----~L~Sgs~DgtIkiWdl~~~~~~~i~~l~gH~~~V~slafspdg~~L~SgS~DgtIriWDi~t~-~l~~l~ 893 (897)
.+++|+.|++|++||++.. .....+.+|...|++++|+|+|++|++|+.|++|++||+.++ .+..+.
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTT--EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEECCCEEEEEECCCC--HHHEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf 88559999908997999889864--2010244777857999996999999998589969999999995789963
Done!