Query 002644
Match_columns 897
No_of_seqs 304 out of 677
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 9E-267 2E-271 2300.0 71.8 823 67-897 82-918 (918)
2 PLN02264 lipoxygenase 100.0 1E-264 3E-269 2281.5 68.7 822 67-897 85-919 (919)
3 PLN02337 lipoxygenase 100.0 2E-260 4E-265 2255.6 70.6 826 55-897 20-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 3E-205 6E-210 1787.8 33.5 662 208-881 1-667 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 1.2E-36 2.7E-41 295.7 13.1 130 55-199 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.1 2.4E-10 5.2E-15 106.2 9.8 82 97-186 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.7 3.9E-08 8.4E-13 91.8 8.1 64 134-197 46-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.5 5E-07 1.1E-11 85.4 8.1 64 134-197 49-116 (116)
9 cd02899 PLAT_SR Scavenger rece 98.2 7.7E-06 1.7E-10 77.9 8.7 77 97-186 20-98 (109)
10 cd01756 PLAT_repeat PLAT/LH2 d 97.8 0.00022 4.8E-09 68.6 11.4 95 96-197 19-118 (120)
11 cd01753 PLAT_LOX PLAT domain o 97.8 0.00016 3.4E-09 69.2 10.0 83 97-188 20-106 (113)
12 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.6 0.0002 4.4E-09 68.8 7.7 54 135-189 43-100 (114)
13 cd01752 PLAT_polycystin PLAT/L 97.2 0.00095 2.1E-08 64.3 7.8 86 96-189 19-109 (120)
14 cd01754 PLAT_plant_stress PLAT 97.2 0.00097 2.1E-08 65.5 7.9 56 132-189 57-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 40.7 1.1E+02 0.0025 29.6 7.5 50 133-182 46-105 (120)
16 TIGR03124 ctirate_citX holo-AC 27.3 28 0.00061 35.9 1.0 54 201-271 81-134 (165)
17 KOG2675 Adenylate cyclase-asso 25.8 2.1E+02 0.0045 34.0 7.5 111 564-720 91-217 (480)
18 PF10474 DUF2451: Protein of u 25.3 43 0.00094 36.3 2.0 24 679-708 178-201 (234)
19 PF10281 Ish1: Putative stress 23.9 1.2E+02 0.0025 23.7 3.6 31 698-737 5-35 (38)
20 KOG2080 Uncharacterized conser 23.8 40 0.00087 42.5 1.5 52 136-188 1014-1069(1295)
21 PF12588 PSDC: Phophatidylseri 21.1 1.3E+02 0.0028 30.5 4.2 126 694-840 10-138 (141)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=8.8e-267 Score=2299.95 Aligned_cols=823 Identities=53% Similarity=0.976 Sum_probs=780.3
Q ss_pred eeeeEEEEeeccccCcc----ccccchhhhccCCcEEEEEEecccCCCCCCcc---cccccccccCCCCCCCcEEEEEEE
Q 002644 67 TQVKAFVTIKPSVGGLV----SGFVDDVKDMFGKSLLLELVSAELDPKTGAEK---PTIKGFAHRAGEDKDGHIIYESKF 139 (897)
Q Consensus 67 ~~~~~~~~~~~~~~~~~----~~~~d~~~~~~g~~~~l~lvS~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f 139 (897)
.+++++|++++++++.+ .+++|+++|++||+|+|||||++++|+||+|| ++|++|+++. ...+++++|+++|
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~~-~~~~~~~~~~~~f 160 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPKP-SNDPHIVEYAADF 160 (918)
T ss_pred CeEEEEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccCC-CCCCCceEEEEEE
Confidence 34444444444433322 37899999999999999999999999999655 8999999863 3226678999999
Q ss_pred ecCCCCCceEEEEEEeCCCCceeeeeEEEccCCCCcEEEeeccccccCCCCccceEEeeccccCcCCCChhhHHHHHHHH
Q 002644 140 EVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEEL 219 (897)
Q Consensus 140 ~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~g~~~F~c~sWv~~~~~~~~~riff~n~~yLp~~tp~~l~~~R~~EL 219 (897)
+|+++||+||||+|+|.|++||||++|+|+++|+|+|||+||||||+.++|+++||||+||+|||++||++|++|||+||
T Consensus 161 ~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~eL 240 (918)
T PLN02305 161 TVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRREDL 240 (918)
T ss_pred eeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCcccCCeEeeccccCCCCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCCCCcCC---CCccCCCC
Q 002644 220 LNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTL---INYVPRDE 296 (897)
Q Consensus 220 ~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg~~~pyprr~rtgr~~~~~dp~~e~~~~---~~yvPrDe 296 (897)
++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+|+++||.+|+|.. .+||||||
T Consensus 241 ~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrDE 320 (918)
T PLN02305 241 LSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRDE 320 (918)
T ss_pred HHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999669999999999999999999999954 47999999
Q ss_pred ccChhhhhchhhhhHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCcchhhHHHHHhhh-hh-hhhccccc
Q 002644 297 AFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-LP-RLVKGIED 374 (897)
Q Consensus 297 ~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 374 (897)
+|+++|++||+++++|+++|.++|.|+++++.+.++|+||+||++||++|+++|. ...+.++.+ +| .+.+.+++
T Consensus 321 ~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~----~~~~~~~~~p~~~~~~~~i~~ 396 (918)
T PLN02305 321 TFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKT----EEPKDIGLNPFLGNFMKQVLS 396 (918)
T ss_pred CcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCc----hhhhhhhcCCchHHHHHHhhh
Confidence 9999999999999999999999999999998889999999999999999999994 111222233 42 44455588
Q ss_pred cCcccccccCccccccccccccccHHHHHHHhhCCCccchhccccCCCCCCCCCCcCCCCCCcccHHHHHHhhCCcccHH
Q 002644 375 TGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454 (897)
Q Consensus 375 ~~~~~l~fp~P~~~~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~It~e~i~~~l~g~~tl~ 454 (897)
+++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+|||+..|+| +||+
T Consensus 397 ~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~Tle 475 (918)
T PLN02305 397 VSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTVE 475 (918)
T ss_pred cccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHhcCcEEEecccccccchhhccccCCCceecccceeEeecCCCceeeEEEEecCCCCCCCCCCceeeeCCCCCCCchH
Q 002644 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWL 534 (897)
Q Consensus 455 ~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VftP~d~~~~~~~ 534 (897)
|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++.+++.+++||||+++++++|.
T Consensus 476 eAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~ 555 (918)
T PLN02305 476 KAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWI 555 (918)
T ss_pred HHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999988777778899999877778999
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhhcccchhHHHHHhhccCCccCchhhccccchhhhhcchHHHHhhcccCCcccccccC
Q 002644 535 WRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFS 614 (897)
Q Consensus 535 W~LAK~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~~f~ 614 (897)
|+||||||++||++|||+|+||++|||||||||||||||||++|||||||+||||+||+||++||++|||+||+||++|+
T Consensus 556 W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~fs 635 (918)
T PLN02305 556 WKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACFS 635 (918)
T ss_pred HHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCcccccccccCccchhhHHHHHHHHHHHHHhccccccccc
Q 002644 615 PGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPS 694 (897)
Q Consensus 615 ~G~~~~elss~~y~~~w~F~~~~LP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~YY~sD~ 694 (897)
+|+|+|+|++++|++.|+|++++||+||++|||+++|+++|||++|.|||||||+|||+||+||++||++||++||++|+
T Consensus 636 pg~~~~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV~~YY~~D~ 715 (918)
T PLN02305 636 PGKYAMELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYVDHFYSEPN 715 (918)
T ss_pred cchhHHHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHHHhhCCChh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCcccccCCCCCC
Q 002644 695 SVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPI 774 (897)
Q Consensus 695 ~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~~Lv~~lT~iI~~aSaqHAAVNfgQy~y~gf~PN~P~~~r~p~P~ 774 (897)
+|++|.|||+||+||+++||+|+++.+|||+|+|+++||++||+|||+|||||||||||||+|+||+||+|++||++||+
T Consensus 716 ~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~~~Rrp~P~ 795 (918)
T PLN02305 716 SITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKLIPQ 795 (918)
T ss_pred hhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCChhHHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCC--CCCCcHHHHHHHHHHHHHHHHHH
Q 002644 775 EDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQ--AWGDDPVIKAAFERFSGRLKELE 852 (897)
Q Consensus 775 ~~kg~~e~~~~~~~pe~~~L~tlP~~~qa~~~m~~~~~LS~h~~de~yLG~~~~~--~~~~d~~~~~a~~~F~~~L~~Ie 852 (897)
+ ++.+|++|+.+||++||++||++.||+.+|+++++||+|++||+|||++.++ .|+.|+++++||++|+++|++||
T Consensus 796 ~--~~~~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w~~D~~~~~A~~rF~~~L~eIE 873 (918)
T PLN02305 796 E--NDPDYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHWINDHEVVKLFNKFSARLEEIE 873 (918)
T ss_pred C--CCchHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCcccccccCHHHHHHHHHHHHHHHHHH
Confidence 8 6788999999999999999999999999999999999999999999999886 79999999999999999999999
Q ss_pred HHHHHhcccccccccCCCccCCceeecCCCCCCCCcCCCCccccC
Q 002644 853 GIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 897 (897)
Q Consensus 853 ~~I~~RN~~~~lknr~g~~~~PY~~L~Pss~~g~t~~gIPnSIsI 897 (897)
++|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 874 ~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s~~G~T~rgIPNSISI 918 (918)
T PLN02305 874 KTINERNKDIRLKNRNGAGIPPYELLLPTSGPGVTGRGIPNSISI 918 (918)
T ss_pred HHHHHHhCCccccccCCCCCCCccccCCCCCCCCCcCCCCCcccC
Confidence 999999999999999999999999999999999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.4e-264 Score=2281.46 Aligned_cols=822 Identities=50% Similarity=0.927 Sum_probs=781.2
Q ss_pred eeeeEEEEeeccccCcc----ccccchhhhccCCcEEEEEEecccCCCCCCcc----cccccccccCCCCCCCcEEEEEE
Q 002644 67 TQVKAFVTIKPSVGGLV----SGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDKDGHIIYESK 138 (897)
Q Consensus 67 ~~~~~~~~~~~~~~~~~----~~~~d~~~~~~g~~~~l~lvS~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 138 (897)
++++++|+|++++++.+ .+++|+++|++||+|+|||||+++||+||+|+ ++|++|+++ ....+++++|+++
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~~~~~~~y~~~ 163 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNIKAERVHYTAE 163 (919)
T ss_pred EEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCCCCCceEEEEE
Confidence 56666666666554433 37899999999999999999999999998433 899999987 4435778899999
Q ss_pred EecCCCCCceEEEEEEeCCCCceeeeeEEEccCCCCcEEEeeccccccCCCCccceEEeeccccCcCCCChhhHHHHHHH
Q 002644 139 FEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEE 218 (897)
Q Consensus 139 f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~g~~~F~c~sWv~~~~~~~~~riff~n~~yLp~~tp~~l~~~R~~E 218 (897)
|+||++||+||||+|+|.|++||||++|+|+++|+|+|||+|||||||+++|+++||||+||+|||++||++|++|||+|
T Consensus 164 F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~Re~e 243 (919)
T PLN02264 164 FTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALREKE 243 (919)
T ss_pred EEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCcccCCeEeeccccCCCCCCCCCCccccccCCCCCCCCCCccCCCCCCCCCCCCCCCcCC---CCccCCC
Q 002644 219 LLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTL---INYVPRD 295 (897)
Q Consensus 219 L~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg~~~pyprr~rtgr~~~~~dp~~e~~~~---~~yvPrD 295 (897)
|++|||||+||||+||||||||+|||||+||++++++||||||++|||||||||||+|+++||.+|+|.. .+|||||
T Consensus 244 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~iYvPrD 323 (919)
T PLN02264 244 LRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMYVPRD 323 (919)
T ss_pred HHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCceeCCCC
Confidence 9999999999999999999999999999999999999999999779999999999999999999999954 4799999
Q ss_pred CccChhhhhchhhhhHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCcchhhHHHHHhhh-hhhhhccccc
Q 002644 296 EAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-LPRLVKGIED 374 (897)
Q Consensus 296 e~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 374 (897)
|+|+++|+++|+++++||++|.++|.++++++.+ +|+||+||++||++|+++|.. ..++.++.+ +|.+.+.+++
T Consensus 324 E~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~---~~~~~~~~~p~~~~~~~~~~ 398 (919)
T PLN02264 324 EQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLG---FQDDIFKKFPLPKVVTTLQE 398 (919)
T ss_pred CCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcc---hhhhHhhcCChHHHHHHhhh
Confidence 9999999999999999999999999999998754 999999999999999999941 012233344 5455555688
Q ss_pred cCcccccccCccccccccccccccHHHHHHHhhCCCccchhccccCCCCCCCCCCcCCCCCCcccHHHHHHhhCCcccHH
Q 002644 375 TGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVE 454 (897)
Q Consensus 375 ~~~~~l~fp~P~~~~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~It~e~i~~~l~g~~tl~ 454 (897)
+++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+|||+.||+++|+||++||+..|+| +||+
T Consensus 399 ~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G-~Tl~ 477 (919)
T PLN02264 399 SSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG-LSVQ 477 (919)
T ss_pred cccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-CcHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHhcCcEEEecccccccchhhccccCCCceecccceeEeecCCCceeeEEEEecCCCCCCCCCCceeeeCCCCCCCchH
Q 002644 455 EAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWL 534 (897)
Q Consensus 455 ~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VftP~d~~~~~~~ 534 (897)
|||++|||||+||||++|||++++|.++++++|||+||||++++|+|+||||||+++++.+++++++||||+++++++|.
T Consensus 478 eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w~ 557 (919)
T PLN02264 478 QALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWM 557 (919)
T ss_pred HHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999987766678899999777778999
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhhcccchhHHHHHhhccCCccCchhhccccchhhhhcchHHHHhhcccCCcccccccC
Q 002644 535 WRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFS 614 (897)
Q Consensus 535 W~LAK~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~~f~ 614 (897)
|+||||||++||++|||+|+||++||++||||||||+||||.+|||||||.||||+||+||++||+.|||+||++|++|+
T Consensus 558 W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid~~f~ 637 (919)
T PLN02264 558 WQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIESCFT 637 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCcccccccccCccchhhHHHHHHHHHHHHHhccccccccc
Q 002644 615 PGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPS 694 (897)
Q Consensus 615 ~G~~~~elss~~y~~~w~F~~~~LP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~YY~sD~ 694 (897)
+|+|+|+|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||+|||+||+||++||++||++||++|+
T Consensus 638 pg~~~~elss~aYk~~W~F~~~~LP~DL~~RGv~~~D~~~phgl~l~ipdYPYrdDGL~iW~AIk~~V~~yv~~YY~~D~ 717 (919)
T PLN02264 638 AGQYGMEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPDPS 717 (919)
T ss_pred cchhHHHHHHHHHHhccCCccccCHHHHHHcCCCCCCcccccchhhccCCCcchhhHHHHHHHHHHHHHHHHHHhCCChh
Confidence 99999999999999779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCcccccCCCCCC
Q 002644 695 SVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKMPI 774 (897)
Q Consensus 695 ~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~~Lv~~lT~iI~~aSaqHAAVNfgQy~y~gf~PN~P~~~r~p~P~ 774 (897)
+|++|.|||+||+||++.||+|+++++|||+|+|+++||++||+|||+|||||||||||||+|+||+||+|++||+|||+
T Consensus 718 ~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gfvPN~P~~~rrp~P~ 797 (919)
T PLN02264 718 LICTDKELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLIPD 797 (919)
T ss_pred hhcCCHHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcCcccccccCCCCChHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCChhHHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCC-CCCCcHHHHHHHHHHHHHHHHHHH
Q 002644 775 EDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQ-AWGDDPVIKAAFERFSGRLKELEG 853 (897)
Q Consensus 775 ~~kg~~e~~~~~~~pe~~~L~tlP~~~qa~~~m~~~~~LS~h~~de~yLG~~~~~-~~~~d~~~~~a~~~F~~~L~~Ie~ 853 (897)
+ ++++|++|+.+|+++||++||++.||+.+|+++++||+|++||+|||++..+ .|+.|+++++||++|+++|++||+
T Consensus 798 ~--~~~e~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~~~~w~~D~~~~~af~rF~~~L~eIe~ 875 (919)
T PLN02264 798 E--SDPEYASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFSAEIGRIEK 875 (919)
T ss_pred C--CChhhhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCCccccccCHHHHHHHHHHHHHHHHHHH
Confidence 8 6789999999999999999999999999999999999999999999998765 799999999999999999999999
Q ss_pred HHHHhcccccccccCCCccCCceeecCCCCCCCCcCCCCccccC
Q 002644 854 IIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 897 (897)
Q Consensus 854 ~I~~RN~~~~lknr~g~~~~PY~~L~Pss~~g~t~~gIPnSIsI 897 (897)
+|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 876 ~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~G~T~~gIPNSISI 919 (919)
T PLN02264 876 EIEKRNADPSRRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 919 (919)
T ss_pred HHHHHcCCccccccCCCCCCCceeeCCCCCCCCCcCCCCCcccC
Confidence 99999999999999999999999999999999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=1.8e-260 Score=2255.62 Aligned_cols=826 Identities=46% Similarity=0.821 Sum_probs=785.3
Q ss_pred ccceeEEEeecc-eeeeEEEEeeccccCccccccchhhhccCCcEEEEEEecccCC-CCC-Ccc----cccccccccCCC
Q 002644 55 NIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDP-KTG-AEK----PTIKGFAHRAGE 127 (897)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~l~lvS~~~~~-~~~-~~~----~~~~~~~~~~~~ 127 (897)
+|||+|++|+++ ++++++.+ +++|+++|++||+|+|||||++++| +|| +|| ++|++|+++...
T Consensus 20 ~~~~~v~l~~k~~ld~~~~~~----------~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~ 89 (866)
T PLN02337 20 KIKGTVVLMKKNVLDFNDFNA----------SVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITS 89 (866)
T ss_pred eEEEEEEEEEecccchhhccc----------chhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCC
Confidence 689999999887 67776553 8899999999999999999999998 777 443 899999987655
Q ss_pred CCCCcEEEEEEEecCCCCCceEEEEEEeCCCCceeeeeEEEccCCC-CcEEEeeccccccCCCCccceEEeeccccCcCC
Q 002644 128 DKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQ 206 (897)
Q Consensus 128 ~~~~~~~~~~~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~-g~~~F~c~sWv~~~~~~~~~riff~n~~yLp~~ 206 (897)
..+++++|+|+|+||++||+||||+|+|.|++||||++|+|+++|+ |+|||+|||||||+++|+++||||+||+|||++
T Consensus 90 ~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~ 169 (866)
T PLN02337 90 LTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQ 169 (866)
T ss_pred CCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCccc
Confidence 4577889999999999999999999999999999999999999994 899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhhCCCCCCcccCCeEeeccccCCCCCCCCCCccccccCCC-CCCCCCCccCCCCCCCCCCCCCCC
Q 002644 207 TPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASES 285 (897)
Q Consensus 207 tp~~l~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg-~~~pyprr~rtgr~~~~~dp~~e~ 285 (897)
||++|++|||+||++|||||+||||+||||||||+|||||+||++++++|||||| ++|||||||||||+|+++||.+|+
T Consensus 170 tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~es 249 (866)
T PLN02337 170 TPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSES 249 (866)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999 679999999999999999999999
Q ss_pred cCC----CCccCCCCccChhhhhchhhhhHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCcchhhHHHHH
Q 002644 286 RTL----INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALW 361 (897)
Q Consensus 286 ~~~----~~yvPrDe~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~ 361 (897)
|.. .+||||||+|+++|++||+++++||++|.++|.|+++++.+..+|++|+||++||++|+++|.. +..+.+.
T Consensus 250 r~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~--~~~~~~~ 327 (866)
T PLN02337 250 RLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNG--PLLEELR 327 (866)
T ss_pred ccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCc--hHHHHhh
Confidence 943 4799999999999999999999999999999999999988889999999999999999999941 0112233
Q ss_pred hhh-hhhhhccccccCcccccccCccccccccccccccHHHHHHHhhCCCccchhccccCCCCCCCCCCcCCCCCCcccH
Q 002644 362 RTI-LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITK 440 (897)
Q Consensus 362 ~~~-~~~~~~~~~~~~~~~l~fp~P~~~~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~It~ 440 (897)
+.+ ++.++++++++++.+||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||+
T Consensus 328 ~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~ 407 (866)
T PLN02337 328 KNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITE 407 (866)
T ss_pred hcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccCH
Confidence 323 4557777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcccHHHHHhcCcEEEecccccccchhhccccCCCceecccceeEeecCCCceeeEEEEecCCCCCCC--CC
Q 002644 441 ELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGK--PQ 518 (897)
Q Consensus 441 e~i~~~l~g~~tl~~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~~~~~~~--~~ 518 (897)
+||++.|+| +||+|||++|||||+||||.+|||+.++|...++ .|||+||||++++|+|+||||||++|+..++ ++
T Consensus 408 e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~ 485 (866)
T PLN02337 408 EHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGA 485 (866)
T ss_pred HHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCCCCcccCCC
Confidence 999999998 9999999999999999999999999999986554 9999999999999999999999998875433 45
Q ss_pred CceeeeCCCCCCCchHHHHHHHHHHhhcchhhhhhhhhhhcccchhHHHHHhhccCCccCchhhccccchhhhhcchHHH
Q 002644 519 WKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALA 598 (897)
Q Consensus 519 ~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lA 598 (897)
+++||||+++++++|.|+||||||++||++|||+|+||++||+++|||||||+||||++|||||||+||||+||+||++|
T Consensus 486 ~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~A 565 (866)
T PLN02337 486 VSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALA 565 (866)
T ss_pred CCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 79999999877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCcccccccCCchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCcccccccccCccchhhHHHHHHH
Q 002644 599 REALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDAL 678 (897)
Q Consensus 599 R~~LI~~gGiie~~f~~G~~~~elss~~y~~~w~F~~~~LP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDGL~IW~AI 678 (897)
|+.||++||++|+++++|+|+|+|++++|++ |+|++++||+||++|||+++|+++|||+++.|||||||+|||+||+||
T Consensus 566 R~~LI~~gGiid~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~RGv~~~D~~~p~g~~l~i~dYPYrdDGL~iW~AI 644 (866)
T PLN02337 566 RQILINAGGILESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIKRGVAVEDPSSPHGVRLLIEDYPYAVDGLEIWSAI 644 (866)
T ss_pred HHheeCCCCeeeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHHcCCCccccccccccccccCCCcchhhHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccCccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccc
Q 002644 679 KQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFG 758 (897)
Q Consensus 679 ~~~V~~yv~~YY~sD~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~~Lv~~lT~iI~~aSaqHAAVNfgQy~y~ 758 (897)
++||++||++||++|++|++|.|||+||+||+++||+++++++|||+|+|+++||++||+|||+|||||||||||||+|+
T Consensus 645 ~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~ 724 (866)
T PLN02337 645 ETWVKEYCAFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCTIIIWIASALHAAVNFGQYPYA 724 (866)
T ss_pred HHHHHHHHHhhCCchHhhccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHhhhhhcchhhhhhhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCCCCCCChhHHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCcHHHH
Q 002644 759 GYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIK 838 (897)
Q Consensus 759 gf~PN~P~~~r~p~P~~~kg~~e~~~~~~~pe~~~L~tlP~~~qa~~~m~~~~~LS~h~~de~yLG~~~~~~~~~d~~~~ 838 (897)
||+||+|++||++||++ |+.+|++|..+||+++|++||++.||+.+|+++++||+|++||+|||+|+++.|+.|++++
T Consensus 725 gfvPN~P~~~r~~~P~~--~~~e~~~l~~~~e~~~L~tlp~~~qt~~~~~l~~lLS~~s~de~yLG~~~~~~w~~d~~~~ 802 (866)
T PLN02337 725 GYLPNRPTVSRRFMPEP--GTPEYEELEKNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTPEWTSDAEPL 802 (866)
T ss_pred cccCCCchhhcCCCCCC--CchhhhhhccCcHHHHHHhCCCHHHHHHHHHHHHHhccCCCCceeccCcCCcccccCHHHH
Confidence 99999999999999976 7889999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCCccCCceeecCCC-----CCCCCcCCCCccccC
Q 002644 839 AAFERFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFS-----EPGVTGQGVPYSISI 897 (897)
Q Consensus 839 ~a~~~F~~~L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~Pss-----~~g~t~~gIPnSIsI 897 (897)
+|+++|+++|++||++|++||+++.+|||+||+++||+||+|++ +||||||||||||||
T Consensus 803 ~a~~~F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 803 EAFKRFGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDYTGEGGLTGKGIPNSVSI 866 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccccCCCCcccCCCCCcccC
Confidence 99999999999999999999999999999999999999999999 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=2.7e-205 Score=1787.77 Aligned_cols=662 Identities=58% Similarity=0.993 Sum_probs=579.3
Q ss_pred ChhhHHHHHHHHHHhhCCCCCCcccCCeEeeccccCCCCCCCCCCccccccCCC-CCCCCCCccCCCCCCCCCCCCCCCc
Q 002644 208 PNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASESR 286 (897)
Q Consensus 208 p~~l~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg-~~~pyprr~rtgr~~~~~dp~~e~~ 286 (897)
|.+|+++|++||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred CCCCccCCCCccChhhhhchhhhhHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCcchhhHHHHHhhh--
Q 002644 287 TLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-- 364 (897)
Q Consensus 287 ~~~~yvPrDe~f~~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~~~-- 364 (897)
..++||||||+|++.|+++|.++++||++|.++|.|++++..+..+|+||+||++||++|+++|. +..+..
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~-------~~~~~~~~ 153 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT-------DLLKKLIP 153 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H-------HHHCCHTT
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh-------hHhhhcCc
Confidence 88999999999999999999999999999999999999988788999999999999999999882 222323
Q ss_pred hhhhhccccccCcccccccCccccccccccccccHHHHHHHhhCCCccchhccccCCCCCCCCCCcCCCCCCcccHHHHH
Q 002644 365 LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIE 444 (897)
Q Consensus 365 ~~~~~~~~~~~~~~~l~fp~P~~~~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~It~e~i~ 444 (897)
++.+.+.+.+++++++|||+|+|++.++++|++|+|||||+|||+||++|+||++||++++|||++||+++|+||++||+
T Consensus 154 ~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~ 233 (667)
T PF00305_consen 154 LELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIE 233 (667)
T ss_dssp STTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHH
T ss_pred HHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhh
Confidence 45677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCcccHHHHHhcCcEEEecccccccchhhccccCCCceecccceeEeecCCCceeeEEEEecCCCCCCCCCCceeee
Q 002644 445 KEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFT 524 (897)
Q Consensus 445 ~~l~g~~tl~~al~~grLFi~Dy~d~~lp~~~~in~~~g~~~yA~~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~Vft 524 (897)
..|+| +||++||++|||||+|||++++|++++||. ++++.|||+||||++++|+|+||||||++|+..+.++.++|||
T Consensus 234 ~~l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~t 311 (667)
T PF00305_consen 234 PQLEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFT 311 (667)
T ss_dssp HHCHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-
T ss_pred hccCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeee
Confidence 99999 999999999999999999999999999998 7899999999999999999999999998886555456789999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcchhhhhhhhhhhcccchhHHHHHhhccCCccCchhhccccchhhhhcchHHHHhhccc
Q 002644 525 PSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVN 604 (897)
Q Consensus 525 P~d~~~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~ 604 (897)
|+++++.+|.|+||||||++||+++||+|+||++||+|||||||||+||||.+|||||||.||||+||+||++||++||+
T Consensus 312 P~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~ 391 (667)
T PF00305_consen 312 PSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLIN 391 (667)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSS
T ss_pred cCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhc
Confidence 99665678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCcccccccccCccchhhHHHHHHHHHHHHH
Q 002644 605 AGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTD 684 (897)
Q Consensus 605 ~gGiie~~f~~G~~~~elss~~y~~~w~F~~~~LP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDGL~IW~AI~~~V~~ 684 (897)
+||+||++|++|+++++|++++|++ |+|++++||+||++|||+++|++++||+++.|||||||+|||+||+||++||++
T Consensus 392 ~gG~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~~V~~ 470 (667)
T PF00305_consen 392 AGGIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKRGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKKFVSD 470 (667)
T ss_dssp TTSHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHTTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhhcccccccccccccccccccCChhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhheeccccccccccccccccccccCCc
Q 002644 685 FVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNR 764 (897)
Q Consensus 685 yv~~YY~sD~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~~Lv~~lT~iI~~aSaqHAAVNfgQy~y~gf~PN~ 764 (897)
||++||++|++|++|.|||+||+||+++||+|+++.+||++|+|+++||++||+|||+|||||||||||||+|+||+||+
T Consensus 471 ~v~~yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~~PN~ 550 (667)
T PF00305_consen 471 YVNLYYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDYYGFVPNR 550 (667)
T ss_dssp HHHHHSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSGGGS
T ss_pred hhhhhcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccceeeecCCC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCChh--HHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCcHHHHHHHH
Q 002644 765 PTVARTKMPIEDPSDED--WKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFE 842 (897)
Q Consensus 765 P~~~r~p~P~~~kg~~e--~~~~~~~pe~~~L~tlP~~~qa~~~m~~~~~LS~h~~de~yLG~~~~~~~~~d~~~~~a~~ 842 (897)
|++||+++|.+ ++.+ |++|+.+||+++|++||++.||+.+|+++++||+|++||+|||+|++++|+.|+++++|++
T Consensus 551 P~~~r~~~P~~--~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~~~~~~~LS~~~~de~~Lg~~~~~~w~~d~~~~~a~~ 628 (667)
T PF00305_consen 551 PTALRRPMPPP--TTKEVTYEELLKDPEKDFLSTLPSKQQALLQMAVLELLSRHSPDEEYLGQYPEPHWFSDPEAKAAFE 628 (667)
T ss_dssp -S-BSSSS--T--SSSH--HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTCB-TT--BTTT-SSTTSSSSHHHHHHHH
T ss_pred ChhhcccCCCC--CcchhhhhhhccChHHHHHHhcCCHHHHHHHHHHHHHhccCCCCcccccCcCcccccccHHHHHHHH
Confidence 99999999987 5555 9999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCccCCceeecCC
Q 002644 843 RFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPF 881 (897)
Q Consensus 843 ~F~~~L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~Ps 881 (897)
+|+++|++||++|++||+++.+|||+|||++||+||+||
T Consensus 629 ~F~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 629 RFQEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 999999999999999999999999999999999999996
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=1.2e-36 Score=295.72 Aligned_cols=130 Identities=46% Similarity=0.784 Sum_probs=115.7
Q ss_pred ccceeEEEeecc-eeeeEEEEeeccccCccccccchhhhccCCcEEEEEEecccCCCCCCcc----cccccccccCCCCC
Q 002644 55 NIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PTIKGFAHRAGEDK 129 (897)
Q Consensus 55 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~l~lvS~~~~~~~~~~~----~~~~~~~~~~~~~~ 129 (897)
++||+|++|+++ +++++.. +.+|++.|++||+|+|||||+++||+||+|| ++|++|.++.
T Consensus 2 ~vka~V~v~~k~~~~~~~~~-----------~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~---- 66 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG-----------SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL---- 66 (137)
T ss_pred EEEEEEEEEEeecccccccc-----------chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC----
Confidence 577777777776 5555432 5689999999999999999999999999655 8999998653
Q ss_pred CCcEEEEEEEecCCCCCceEEEEEEeCCCCceeeeeEEEccCCC-CcEEEeeccccccCCCCccceEEeec
Q 002644 130 DGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIFFTN 199 (897)
Q Consensus 130 ~~~~~~~~~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~-g~~~F~c~sWv~~~~~~~~~riff~n 199 (897)
+++.+|+++|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||+++|+++||||+|
T Consensus 67 ~~e~~y~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 67 AGESAYEAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred CcceEEEEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 56779999999999999999999999999999999999999995 89999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.13 E-value=2.4e-10 Score=106.21 Aligned_cols=82 Identities=34% Similarity=0.504 Sum_probs=63.1
Q ss_pred cEEEEEEecccCCCCCCc-ccccccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEeCC-CCceeeeeEEEccCCCC
Q 002644 97 SLLLELVSAELDPKTGAE-KPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH-HKEMYLNDIVLDGPRNG 174 (897)
Q Consensus 97 ~~~l~lvS~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~-~~e~fl~~i~l~~~p~g 174 (897)
+|.|+|++++.+ +|.. ...++.|. . .....|+..|.++.++|++++|.|++++ ..+|||++|+|++.+.|
T Consensus 20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f-~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~ 91 (105)
T smart00308 20 SVSLSLVGAEGD--GKESKLDYLFKGI-----F-ARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTG 91 (105)
T ss_pred eEEEEEEeCCCC--CcceeccccCCcc-----c-cCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCC
Confidence 699999998765 3321 13444442 1 2234677777799999999999999999 79999999999876655
Q ss_pred -cEEEeecccccc
Q 002644 175 -PVNITCGSWVQS 186 (897)
Q Consensus 175 -~~~F~c~sWv~~ 186 (897)
.++|+||+||++
T Consensus 92 ~~~~F~c~~Wl~~ 104 (105)
T smart00308 92 GKYHFPCNSWVYP 104 (105)
T ss_pred CEEEEEcCceeCC
Confidence 899999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.71 E-value=3.9e-08 Score=91.77 Aligned_cols=64 Identities=23% Similarity=0.538 Sum_probs=55.2
Q ss_pred EEEEEEecCCCCCceEEEEEEeC---CCCceeeeeEEEccCCCC-cEEEeeccccccCCCCccceEEe
Q 002644 134 IYESKFEVPPSFGEVGAILVENE---HHKEMYLNDIVLDGPRNG-PVNITCGSWVQSKHVNKQKRIFF 197 (897)
Q Consensus 134 ~~~~~f~~~~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~g-~~~F~c~sWv~~~~~~~~~riff 197 (897)
..+..|..+.++|+|.+|.|.++ ....|||++|+|...+.| .+.|+||+||....+++.+|+||
T Consensus 46 ~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 46 TDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred eEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 33344446789999999999998 678999999999876666 89999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.46 E-value=5e-07 Score=85.39 Aligned_cols=64 Identities=9% Similarity=0.189 Sum_probs=53.7
Q ss_pred EEEEEEecCCCCCceEEEEEEeCCCC---ceeeeeEEEccCCCC-cEEEeeccccccCCCCccceEEe
Q 002644 134 IYESKFEVPPSFGEVGAILVENEHHK---EMYLNDIVLDGPRNG-PVNITCGSWVQSKHVNKQKRIFF 197 (897)
Q Consensus 134 ~~~~~f~~~~~~G~pgai~v~n~~~~---e~fl~~i~l~~~p~g-~~~F~c~sWv~~~~~~~~~riff 197 (897)
.++..|+.+.++|++.+|.|++++.. +|||++|+|.+...| .++|+||+||.....++.+|+|.
T Consensus 49 ~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 49 TDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred ceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeecC
Confidence 33344557789999999999999875 999999999876655 89999999999988888888863
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.16 E-value=7.7e-06 Score=77.85 Aligned_cols=77 Identities=13% Similarity=0.299 Sum_probs=55.2
Q ss_pred cEEEEEEecccCCCCCCcccccccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEeCC-CCceeeeeEEEccCCCC-
Q 002644 97 SLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH-HKEMYLNDIVLDGPRNG- 174 (897)
Q Consensus 97 ~~~l~lvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~-~~e~fl~~i~l~~~p~g- 174 (897)
+|.|+||-++- .++ +..|.+ .-.....++|.++ ++++|++-.|.|.|.. .+.|||+.|+|++ |.|
T Consensus 20 ~V~i~L~G~~g--~S~--~~~L~~-----~F~~G~~d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g~ 86 (109)
T cd02899 20 TIEITLLGSSG--RSN--PKTLSQ-----GFYPGSLKRIRFR---AADVGDINAIILSNTALNDPWYCDYVRIKS-EDGK 86 (109)
T ss_pred eEEEEEEECCC--CcC--CEEccC-----ccCCCceEEEEEC---ccccCceEEEEEECCCCCCCceeeEEEEEC-CCCC
Confidence 48899996642 222 222322 1112335678665 7999999999998877 4789999999986 866
Q ss_pred cEEEeecccccc
Q 002644 175 PVNITCGSWVQS 186 (897)
Q Consensus 175 ~~~F~c~sWv~~ 186 (897)
.++||||+|+..
T Consensus 87 ~~~Fpc~rWla~ 98 (109)
T cd02899 87 VFAFNVKRWIGY 98 (109)
T ss_pred EEEEEcceeeCC
Confidence 788999999974
No 10
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.79 E-value=0.00022 Score=68.58 Aligned_cols=95 Identities=12% Similarity=0.329 Sum_probs=61.4
Q ss_pred CcEEEEEEecccCCCCCCcccccccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEeCCC---CceeeeeEEEccCC
Q 002644 96 KSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHH---KEMYLNDIVLDGPR 172 (897)
Q Consensus 96 ~~~~l~lvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~~---~e~fl~~i~l~~~p 172 (897)
-+|.++|+-+.- . .++-.|..+.....-.....++|.++ . .++|++-.|.|+.+.. ..|||+.|+|.+..
T Consensus 19 a~V~i~L~G~~g--~--s~~~~L~~~~~~~~FerGs~d~F~i~--~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~ 91 (120)
T cd01756 19 ANVFITLYGENG--D--TGKRKLKKSNNKNKFERGQTDKFTVE--A-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPG 91 (120)
T ss_pred cEEEEEEEeCCC--c--cccEEccCCCcCCcccCCCeEEEEEE--e-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEECC
Confidence 348888885421 1 22334544311111111234577776 4 7899999999998774 68999999998655
Q ss_pred CC-cEEEeeccccccCCCC-ccceEEe
Q 002644 173 NG-PVNITCGSWVQSKHVN-KQKRIFF 197 (897)
Q Consensus 173 ~g-~~~F~c~sWv~~~~~~-~~~riff 197 (897)
.| ..+|+||+|+...+.. .-.|++.
T Consensus 92 ~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 92 TGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred CceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 56 7899999999876532 2246654
No 11
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.77 E-value=0.00016 Score=69.19 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=56.4
Q ss_pred cEEEEEEecccCCCCCCcccccccccccCCCCCCCcEEEEEEEecCCCCCceEEEEEEeCC---CCceeeeeEEEccCCC
Q 002644 97 SLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRN 173 (897)
Q Consensus 97 ~~~l~lvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~ 173 (897)
+|.|+|+-++-+ ++ .-.|..... .-.....++|.++ ++.++|++-.|.|+.++ ...|||+.|+|++ +.
T Consensus 20 ~V~i~l~G~~g~--S~--~~~L~~~~~--~FerG~~d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~-~~ 90 (113)
T cd01753 20 YIYLTLVGTAGE--SE--KQLLDRPGY--DFERGAVDEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYITVTG-PG 90 (113)
T ss_pred EEEEEEEECCCc--cc--CEEcCCCCC--ccCCCCeeEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEEEEEc-CC
Confidence 488888866432 22 222322111 1111234567666 77899999999999877 4799999999986 43
Q ss_pred C-cEEEeeccccccCC
Q 002644 174 G-PVNITCGSWVQSKH 188 (897)
Q Consensus 174 g-~~~F~c~sWv~~~~ 188 (897)
| .++||||+|+....
T Consensus 91 ~~~~~F~c~rWl~~~~ 106 (113)
T cd01753 91 GDEYHFPCYRWIEGYG 106 (113)
T ss_pred CCEEEEEhHHeECCCC
Confidence 6 78999999997753
No 12
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.59 E-value=0.0002 Score=68.76 Aligned_cols=54 Identities=13% Similarity=0.420 Sum_probs=44.0
Q ss_pred EEEEEecCCCCCceEEEEEEeCCC---CceeeeeEEEccCCCC-cEEEeeccccccCCC
Q 002644 135 YESKFEVPPSFGEVGAILVENEHH---KEMYLNDIVLDGPRNG-PVNITCGSWVQSKHV 189 (897)
Q Consensus 135 ~~~~f~~~~~~G~pgai~v~n~~~---~e~fl~~i~l~~~p~g-~~~F~c~sWv~~~~~ 189 (897)
|+..+. +.++|++-.|.|..++. ..|||+.|.|++.+.| .++||||+|+...+.
T Consensus 43 f~~~v~-~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 43 LEMTFD-CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred eEEEEe-cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 443433 39999999999998773 7899999999887766 799999999987653
No 13
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.24 E-value=0.00095 Score=64.25 Aligned_cols=86 Identities=15% Similarity=0.266 Sum_probs=55.9
Q ss_pred CcEEEEEEecccCCCCCCcccccccccccCCCCCC-CcEEEEEEEecCCCCCceEEEEEEeCC---CCceeeeeEEEccC
Q 002644 96 KSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKD-GHIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGP 171 (897)
Q Consensus 96 ~~~~l~lvS~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~ 171 (897)
-+|.|+|+.+.-+ + ++-.|.+... ..... ...+|.+. .+.++|++-.|.|..+. ...|||+.|+|.+.
T Consensus 19 a~V~i~L~G~~g~--s--~~~~L~~~~~--~~F~rG~~~~f~i~--~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~ 90 (120)
T cd01752 19 AKVTITLYGAEGE--S--EPHHLRDPEK--PIFERGSVDSFLLT--TPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDL 90 (120)
T ss_pred cEEEEEEEeCCCC--c--ccEEcCCCCc--cceeCCCeeEEEec--CccCCCCccEEEEEECCCCCCCCeEEEEEEEEEC
Confidence 3588888866422 2 1223332211 11111 23345444 67899999999998766 37999999999864
Q ss_pred CCC-cEEEeeccccccCCC
Q 002644 172 RNG-PVNITCGSWVQSKHV 189 (897)
Q Consensus 172 p~g-~~~F~c~sWv~~~~~ 189 (897)
..| ..+|+||+|+...+.
T Consensus 91 ~t~~~~~F~~~rWl~~~~~ 109 (120)
T cd01752 91 QTGKKWFFLCNDWLSVEEG 109 (120)
T ss_pred CCCcEEEEEeCcEECCcCC
Confidence 445 789999999987643
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.24 E-value=0.00097 Score=65.46 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=45.6
Q ss_pred cEEEEEEEecCCCCCceEEEEEEeCC---CCceeeeeEEEccCCC---C-cEEEeeccccccCCC
Q 002644 132 HIIYESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRN---G-PVNITCGSWVQSKHV 189 (897)
Q Consensus 132 ~~~~~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~---g-~~~F~c~sWv~~~~~ 189 (897)
.++|.++ .+.++|++-.|.|.... ...|||..|+|.+... + .++||||+|+...+.
T Consensus 57 ~d~F~v~--~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 57 LDRFSGR--GPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred ccEEEEE--eccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 4678777 67889999999999876 4789999999986542 2 799999999976653
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=40.73 E-value=1.1e+02 Score=29.60 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=39.2
Q ss_pred EEEEEEEecCCCCCceEEEEEEeCCC----------CceeeeeEEEccCCCCcEEEeecc
Q 002644 133 IIYESKFEVPPSFGEVGAILVENEHH----------KEMYLNDIVLDGPRNGPVNITCGS 182 (897)
Q Consensus 133 ~~~~~~f~~~~~~G~pgai~v~n~~~----------~e~fl~~i~l~~~p~g~~~F~c~s 182 (897)
..|..-+..+.++|..-.|.++-+.. ..||++.|+|+....+.-..-|.+
T Consensus 46 ~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 46 KTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred CEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 46666666899999999999975443 389999999987777766667877
No 16
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=27.31 E-value=28 Score=35.94 Aligned_cols=54 Identities=30% Similarity=0.477 Sum_probs=32.8
Q ss_pred ccCcCCCChhhHHHHHHHHHHhhCCCCCCcccCCeEeeccccCCCCCCCCCCccccccCCCCCCCCCCccC
Q 002644 201 SYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCR 271 (897)
Q Consensus 201 ~yLp~~tp~~l~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg~~~pyprr~r 271 (897)
+|+--+.++.-.|..-=+|++-.- -=|++|.|||+.-| ..+-|--|| +| ||||=
T Consensus 81 ~~~~v~~~a~~vK~~~i~iEe~hp--------lGRL~DlDV~~~~g-----~~iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 81 AFLVVDAPALELKRLMIKLEESHP--------LGRLWDIDVLDADG-----KSLSRTDLG---LP-PRKCL 134 (165)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCCc--------hhhheeheeecCCC-----CCcCHHHcC---CC-CCeee
Confidence 334444454445556666665542 22899999997433 346677777 34 89985
No 17
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=25.76 E-value=2.1e+02 Score=34.04 Aligned_cols=111 Identities=22% Similarity=0.334 Sum_probs=74.9
Q ss_pred hHHHHHhhccCCccCchhhccccchhhhhcchHHH--------------HhhcccCCcccccccCCchhHHHH--HHHHH
Q 002644 564 EPYIIATNRQLSAMHPINRLLQPHFRYTMEINALA--------------REALVNAGGIIESTFSPGKYSMEL--SSVAY 627 (897)
Q Consensus 564 EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lA--------------R~~LI~~gGiie~~f~~G~~~~el--ss~~y 627 (897)
+-+.+|..+|=|..-=+..+|.|--..++.||..= -..=|.+=|++.-.-+|+.|.-|| ++.-|
T Consensus 91 ~~L~~A~q~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~tP~p~vke~~daa~FY 170 (480)
T KOG2675|consen 91 AFLWVASQKQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFY 170 (480)
T ss_pred HHHHHHHhccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHH
Confidence 44667788888888889999999999999998743 233345567776555678886555 33334
Q ss_pred hccCCCCCCCCchHHHhcCCCCCCCCCCcccccccccCccchhhHHHHHHHHHHHHHhcccccccccCccCCHHHHHHHH
Q 002644 628 DKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWT 707 (897)
Q Consensus 628 ~~~w~F~~~~LP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~YY~sD~~V~~D~ELQaW~~ 707 (897)
-+ .- |..|.=-|+ .-+ +||+.|+.+| .|||++++
T Consensus 171 ~N----------rv--------------------LkEyk~~D~-~hv-----eWvKa~l~l~----------~eL~~YVk 204 (480)
T KOG2675|consen 171 TN----------RV--------------------LKEYKEKDP-RHV-----EWVKAYLALF----------LELQAYVK 204 (480)
T ss_pred HH----------HH--------------------HHHhccCCh-hHH-----HHHHHHHHHH----------HHHHHHHH
Confidence 33 11 122221111 112 6999999999 79999999
Q ss_pred HHHhccCCCCCCC
Q 002644 708 EIRTVGHADKKDE 720 (897)
Q Consensus 708 Ei~~~G~~d~kd~ 720 (897)
|-.+-|....++-
T Consensus 205 ~hhtTGl~W~~~g 217 (480)
T KOG2675|consen 205 EHHTTGLVWNKDG 217 (480)
T ss_pred HhccccceecCCC
Confidence 9998888766653
No 18
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=25.30 E-value=43 Score=36.33 Aligned_cols=24 Identities=29% Similarity=0.861 Sum_probs=20.3
Q ss_pred HHHHHHhcccccccccCccCCHHHHHHHHH
Q 002644 679 KQWVTDFVNHYYPNPSSVESDEELRSWWTE 708 (897)
Q Consensus 679 ~~~V~~yv~~YY~sD~~V~~D~ELQaW~~E 708 (897)
.+||..||+.|| ..+.||..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 579999999999 345799999986
No 19
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.91 E-value=1.2e+02 Score=23.67 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHh
Q 002644 698 SDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIIT 737 (897)
Q Consensus 698 ~D~ELQaW~~Ei~~~G~~d~kd~p~~P~l~T~~~Lv~~lT 737 (897)
.|.+|+.|..+ ||-... +...|+++|++.+-
T Consensus 5 s~~~L~~wL~~-----~gi~~~----~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKS-----HGIPVP----KSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHH-----cCCCCC----CCCCCHHHHHHHHH
Confidence 46899999987 332222 12269999998763
No 20
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=23.82 E-value=40 Score=42.48 Aligned_cols=52 Identities=15% Similarity=0.448 Sum_probs=37.8
Q ss_pred EEEEecCCCCCceEEEEEEeCC---CCceeeeeEEEccCCCC-cEEEeeccccccCC
Q 002644 136 ESKFEVPPSFGEVGAILVENEH---HKEMYLNDIVLDGPRNG-PVNITCGSWVQSKH 188 (897)
Q Consensus 136 ~~~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~g-~~~F~c~sWv~~~~ 188 (897)
+.+|+. .++|..--+.|-... ...||++.|.|..--.| ++.|||++|.-+..
T Consensus 1014 ~f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ge 1069 (1295)
T KOG2080|consen 1014 LFKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGE 1069 (1295)
T ss_pred eeEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCcc
Confidence 345543 789999988886544 36899999877431246 89999999997653
No 21
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=21.12 E-value=1.3e+02 Score=30.52 Aligned_cols=126 Identities=16% Similarity=0.163 Sum_probs=70.8
Q ss_pred cCccCCHHHHHHHHHHHhccCCCCCCCCCCC-CCCChhHHHHHHhhheeccccccccccccccccccccCCcccccCCCC
Q 002644 694 SSVESDEELRSWWTEIRTVGHADKKDEPWWP-VLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPTVARTKM 772 (897)
Q Consensus 694 ~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P-~l~T~~~Lv~~lT~iI~~aSaqHAAVNfgQy~y~gf~PN~P~~~r~p~ 772 (897)
+-|.+|++|..+.+++.++ ....++-.|.| .+++.++|..++-.||-+|=.... .-.+-..-|+.=|. .+--||
T Consensus 10 ~lIe~dp~l~ml~~~Mf~q-~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~~~--~~~~~glvG~P~na--iLdwpM 84 (141)
T PF12588_consen 10 DLIESDPRLYMLFTQMFDQ-PPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEFSD--ANEPVGLVGFPMNA--ILDWPM 84 (141)
T ss_pred HHHhcCHHHHHHHHHHHhC-cccccCCCCCccccccHHHHHHHHHHHHhhCCcccc--cCCCCCccccChHH--HHHhhc
Confidence 3468999999999999987 32233434677 899999999999999955433222 00112334443332 223345
Q ss_pred CCCCCCChhHHhhhcCcHHHHHhcCCChHHHHHHHHH--HHhhcCCCCCCccccccCCCCCCCcHHHHHH
Q 002644 773 PIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAI--LDTLSSHSPDEEYLGKQMEQAWGDDPVIKAA 840 (897)
Q Consensus 773 P~~~kg~~e~~~~~~~pe~~~L~tlP~~~qa~~~m~~--~~~LS~h~~de~yLG~~~~~~~~~d~~~~~a 840 (897)
-|+ ..|.-|+ -|...+.+..|.- ...|++..+- ..|...+...|++. .+++.
T Consensus 85 ~T~----sG~a~F~----------~p~vN~~lK~ILn~W~~fL~sp~S~-~vL~~~~~~GWfs~-~A~~~ 138 (141)
T PF12588_consen 85 GTP----SGYAFFL----------DPDVNAQLKKILNEWGEFLSSPASR-SVLNTDPPNGWFSP-EALKE 138 (141)
T ss_pred cCh----HHHHHHc----------CHHHHHHHHHHHHHHHHHcCChhhh-ccccCCCCCCccCH-HHHHH
Confidence 443 2354332 2333444444432 2457655443 34665533479985 44443
Done!