Query 002650
Match_columns 896
No_of_seqs 349 out of 800
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 17:43:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002650.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1365-1369//hhsearch_pdb/002650hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 215.5 13.9 115 118-232 5-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 130.9 11.4 96 124-229 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 100.5 10.6 94 124-228 8-101 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 43.9 6.6 93 123-216 17-123 (404)
5 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 30.9 4.3 63 760-828 2-80 (102)
6 2ktr_A Sequestosome-1; autopha 1.0 1 1 29.3 4.3 62 760-827 17-94 (117)
7 1vd2_A Protein kinase C, IOTA 1.0 1 1 27.6 7.3 57 762-825 5-61 (89)
8 4b8c_D Glucose-repressible alc 1.0 1 1 26.0 -0.1 81 476-560 53-133 (727)
9 1wmh_B Partitioning defective- 1.0 1 1 25.3 6.6 70 762-838 5-76 (86)
10 1q1o_A Cell division control p 1.0 1 1 24.3 6.8 67 760-828 2-75 (98)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=215.51 Aligned_cols=115 Identities=29% Similarity=0.464 Sum_probs=106.2
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCH
Q ss_conf 99999852389960436799999424600026330999999999996089997469981898899808996125424620
Q 002650 118 TLSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWS 197 (896)
Q Consensus 118 ~~~~~~~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs 197 (896)
...+....+|+|+||+|||++++||+||+++||++||+++..+..++++|.++|.+|++|+|||+||+++++|+||+||+
T Consensus 5 ~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~ 84 (130)
T 1wid_A 5 SSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWS 84 (130)
T ss_dssp ---CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHH
T ss_pred CCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHH
T ss_conf 78999862499998557718977799678999966886544457883899999589999999999978999638837748
Q ss_pred HHHCCCCCCCCCEEEEEECC--CCCEEEEEECCCCCC
Q ss_conf 01013577679879999827--983799887069999
Q 002650 198 VFVSAKRLVAGDSVLFIWND--KNQLLLGIRRANRPP 232 (896)
Q Consensus 198 ~FV~~KkL~aGDsVvF~R~~--~g~L~vGIRRa~r~~ 232 (896)
.||++|+|++||.|+|++.+ .++|+|++||+.++.
T Consensus 85 ~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 85 RFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 8778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=130.86 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=84.4
Q ss_pred CEEEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 52389960436799999424600026330999999999996089997469981898899808996125424620010135
Q 002650 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (896)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (896)
..+|.|+||+||+.+..++.||+++|+++||..+ ..+.+.|. |+.|.|+|+|++. ++.|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHHC
T ss_conf 9989999785661898679909999997488888-------37999979-9478989999589--078777638988875
Q ss_pred CCCCCCEEEEEECCCC--CEEEEEECCC
Q ss_conf 7767987999982798--3799887069
Q 002650 204 RLVAGDSVLFIWNDKN--QLLLGIRRAN 229 (896)
Q Consensus 204 kL~aGDsVvF~R~~~g--~L~vGIRRa~ 229 (896)
+|++||.++|...++. .+.|.|-|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 9998989999993698659999999445
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=100.46 Aligned_cols=94 Identities=22% Similarity=0.394 Sum_probs=80.4
Q ss_pred CEEEEEEECCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 52389960436799999424600026330999999999996089997469981898899808996125424620010135
Q 002650 124 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 203 (896)
Q Consensus 124 ~~~F~K~LT~SDv~~~grfsVPk~~AE~~FPpLd~~~~~p~q~L~v~D~~G~~W~FR~iyrg~prrhlLTtGWs~FV~~K 203 (896)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|++++.++. +++.|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCC--CCEEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHHC
T ss_conf 9878999877775--531888999998648669-------9889999799999999999989--9499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 7767987999982798379988706
Q 002650 204 RLVAGDSVLFIWNDKNQLLLGIRRA 228 (896)
Q Consensus 204 kL~aGDsVvF~R~~~g~L~vGIRRa 228 (896)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECC
T ss_conf 9998989999985897699999789
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=43.90 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=67.5
Q ss_pred CCEEEEEEECCCCCCCC----CCEEECHHHHHHCCCCCC-CCCCCCCEEEEE--EECCCCEEEEEEEEEC------CCCC
Q ss_conf 85238996043679999----942460002633099999-999999608999--7469981898899808------9961
Q 002650 123 PTNYFCKTLTASDTSTH----GGFSVPRRAAEKVFPPLD-FSQQPPAQELIA--RDLHDNEWKFRHIFRG------QPKR 189 (896)
Q Consensus 123 ~~~~F~K~LT~SDv~~~----grfsVPk~~AE~~FPpLd-~~~~~p~q~L~v--~D~~G~~W~FR~iyrg------~prr 189 (896)
....|+|.|++.|++.. ++|.+|+.....+||.|+ .....|.+.+.+ -|...-++.++.+|++ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 25424620-0101357767987999982
Q 002650 190 HLLTTGWS-VFVSAKRLVAGDSVLFIWN 216 (896)
Q Consensus 190 hlLTtGWs-~FV~~KkL~aGDsVvF~R~ 216 (896)
|.||. |. .+.-.....+||.++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=30.90 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=44.1
Q ss_pred CCCCCEEEEEECC-----CCEEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9985528982027-----5125540699-----------89989999999998456676579999961999983789757
Q 002650 760 PPNRTFVKVYKSG-----SFGRSLDITK-----------FSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVL 823 (896)
Q Consensus 760 ~~~~~fVKV~m~G-----~igRkIDL~~-----------~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~l 823 (896)
|..++-||+|..| .--|..-|.. -.+|++|+..+.++|..- .+..+++.|.|.|||+.
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l------~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEE
T ss_conf 974699999981677778726998833677754222446666999999999975445------79838999998999989
Q ss_pred ECCCC
Q ss_conf 62688
Q 002650 824 LLGDG 828 (896)
Q Consensus 824 LvGDv 828 (896)
-..++
T Consensus 76 tiSsD 80 (102)
T 2kkc_A 76 AFSSD 80 (102)
T ss_dssp EECSH
T ss_pred EECCH
T ss_conf 76488
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=29.28 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCCCCEEEEEECC-----CCEEEECCC-----------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9985528982027-----512554069-----------989989999999998456676579999961999983789757
Q 002650 760 PPNRTFVKVYKSG-----SFGRSLDIT-----------KFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVL 823 (896)
Q Consensus 760 ~~~~~fVKV~m~G-----~igRkIDL~-----------~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~l 823 (896)
+..++-||++..| .--|..-|. .-.+|++|+..+.++|..- .+..|++.|.|.|||+.
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L------~~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL------RPGGFQAHYRAERGDLV 90 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS------CSSCEEEEEECTTCCEE
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC------CCCCEEEEEECCCCCEE
T ss_conf 445289999980677788727998842677743112456777999999999973455------89838999998999989
Q ss_pred ECCC
Q ss_conf 6268
Q 002650 824 LLGD 827 (896)
Q Consensus 824 LvGD 827 (896)
-...
T Consensus 91 tISs 94 (117)
T 2ktr_A 91 AFSS 94 (117)
T ss_dssp EECS
T ss_pred EECC
T ss_conf 7638
No 7
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=27.62 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=42.7
Q ss_pred CCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEC
Q ss_conf 8552898202751255406998998999999999845667657999996199998378975762
Q 002650 762 NRTFVKVYKSGSFGRSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLL 825 (896)
Q Consensus 762 ~~~fVKV~m~G~igRkIDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~lLv 825 (896)
..+=||++-.|. .|.+.+..--+|++|...+..+|.+. ....+++.|.|.|||+.-.
T Consensus 5 ~~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 5 SQVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp SCEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEEC
T ss_pred CEEEEEEEECCE-EEEEECCCCCCHHHHHHHHHHHHCCC------CCCEEEEEEECCCCCCCCC
T ss_conf 718999994785-99998799989999999999996889------8982799999899795033
No 8
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=25.97 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21123331158520020244211124421012321112001110244465577999997445665667721132221212
Q 002650 476 LVQSQMLQQSHPQQTFLQGVQENQHQSQSQTHSQSHLLQPQLQHSHSFNNQQQQPLPQPQQQVDHQQIPSAVSAMSQFAS 555 (896)
Q Consensus 476 ~~~~q~~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 555 (896)
+.+.++.|+.++++...|+.++++.+++. |.+-+|||.++++...++++++|++++.....++............+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~----q~~~qqq~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 128 (727)
T 4b8c_D 53 LAAVSAQSLGQPNIYARQNAMKKYLATQQ----AQQAQQQAQQQAQQQVPGPFGPGPQAAPPALQPTDFQQSHIAEASKS 128 (727)
T ss_dssp HHHHHHHSTTSTTHHHHHHHHHHHC-------------------------------------------------------
T ss_pred HHHHCHHCCCCCHHHHHHHHHHHHHHHHC----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
T ss_conf 87633121266049999999998875013----06678887760667666765668666752000232126566533342
Q ss_pred CCCCC
Q ss_conf 56789
Q 002650 556 VSQSQ 560 (896)
Q Consensus 556 ~~~~~ 560 (896)
.....
T Consensus 129 ~~~~~ 133 (727)
T 4b8c_D 129 LVDCT 133 (727)
T ss_dssp ---CC
T ss_pred CCCCC
T ss_conf 02563
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=25.27 Aligned_cols=70 Identities=21% Similarity=0.182 Sum_probs=51.5
Q ss_pred CCCEEEEEECCCCEE-EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECC-CCCCHHHHCCEE
Q ss_conf 855289820275125-54069989989999999998456676579999961999983789757626-888021102233
Q 002650 762 NRTFVKVYKSGSFGR-SLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLG-DGPWPEFVNSVW 838 (896)
Q Consensus 762 ~~~fVKV~m~G~igR-kIDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~lLvG-DvPWe~Fv~svk 838 (896)
.-.-||.+-++.+=| ++|-..-.+|++|..-++++|.+. ..++++.|.|.+||++-.- |+-..+-+.+++
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred CEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC-------CCCEEEEEECCCCCEEEECCHHHHHHHHHHCC
T ss_conf 8799986338804676726887878899999999975789-------98789999889999761458899999997288
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=24.28 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCEEEEEECC-C----CE--EEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 9985528982027-5----12--55406998998999999999845667657999996199998378975762688
Q 002650 760 PPNRTFVKVYKSG-S----FG--RSLDITKFSSYHELRSELARMFGLEGHLEDPLRSGWQLVFVDRENDVLLLGDG 828 (896)
Q Consensus 760 ~~~~~fVKV~m~G-~----ig--RkIDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~lLvGDv 828 (896)
|..+.-|||+-.. . ++ |.|=+..--+|++|...+.+-|++. ..+......++-|.|.|||+...+|+
T Consensus 2 ~~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~--~~~~i~~~~klkYkDEdGD~Vtl~sd 75 (98)
T 1q1o_A 2 PLGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT--HNNNISPITKIKYQDEDGDFVVLGSD 75 (98)
T ss_dssp CSSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH--CSSCCCCCCCEEEECSSSCEEEECSH
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCC--CCCCCCCEEEEEEECCCCCEEEECCH
T ss_conf 875189999935765666668679999669998999999999997678--65454650479999699998877288
Done!