Query 002651
Match_columns 896
No_of_seqs 309 out of 2143
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 1E-270 3E-275 2198.1 47.5 790 101-894 5-794 (892)
2 PLN00070 aconitate hydratase 100.0 5E-257 1E-261 2228.8 65.6 797 99-895 39-835 (936)
3 PTZ00092 aconitate hydratase-l 100.0 6E-254 1E-258 2200.4 63.8 796 91-895 4-799 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 2E-251 4E-256 2175.4 62.5 768 120-895 2-776 (876)
5 PRK12881 acnA aconitate hydrat 100.0 2E-250 4E-255 2173.1 62.6 778 102-895 3-787 (889)
6 PRK09277 aconitate hydratase; 100.0 1E-248 2E-253 2154.5 64.8 776 103-895 5-786 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 6E-246 1E-250 2122.3 60.6 738 120-894 12-758 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 4E-244 8E-249 2084.1 54.3 753 109-894 6-759 (861)
9 TIGR01340 aconitase_mito aconi 100.0 2E-165 5E-170 1444.5 52.4 610 158-895 19-650 (745)
10 PRK07229 aconitate hydratase; 100.0 1E-146 3E-151 1278.1 44.7 546 158-895 2-551 (646)
11 TIGR01342 acon_putative aconit 100.0 5E-144 1E-148 1255.5 44.3 550 160-895 1-557 (658)
12 KOG0453 Aconitase/homoaconitas 100.0 5E-131 1E-135 1097.8 38.6 596 175-894 82-679 (778)
13 cd01586 AcnA_IRP Aconitase A c 100.0 4E-131 8E-136 1085.5 36.7 400 184-668 1-404 (404)
14 PRK11413 putative hydratase; P 100.0 6E-128 1E-132 1125.5 42.4 592 158-894 34-654 (751)
15 TIGR00139 h_aconitase homoacon 100.0 2E-125 5E-130 1098.8 42.5 574 159-894 2-609 (712)
16 TIGR00170 leuC 3-isopropylmala 100.0 2E-121 5E-126 1030.6 40.6 452 158-668 2-459 (465)
17 PRK12466 isopropylmalate isome 100.0 4E-121 9E-126 1029.8 41.6 452 158-668 3-461 (471)
18 PF00330 Aconitase: Aconitase 100.0 6E-122 1E-126 1038.7 34.2 456 160-666 1-465 (465)
19 PRK05478 isopropylmalate isome 100.0 1E-120 3E-125 1026.0 41.2 452 158-668 2-459 (466)
20 cd01584 AcnA_Mitochondrial Aco 100.0 7E-120 2E-124 1004.4 38.3 409 184-668 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 3E-115 6E-120 961.4 38.2 380 184-668 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 7E-115 2E-119 964.4 40.0 404 160-668 1-408 (412)
23 PRK00402 3-isopropylmalate deh 100.0 2E-114 5E-119 962.0 40.8 406 158-668 2-411 (418)
24 cd01585 AcnA_Bact Aconitase ca 100.0 1E-114 2E-119 955.2 36.7 379 183-668 1-380 (380)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 3E-114 6E-119 959.6 39.7 404 159-668 1-407 (412)
26 TIGR02083 LEU2 3-isopropylmala 100.0 5E-113 1E-117 949.3 41.3 408 159-668 1-413 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 4E-108 8E-113 889.4 37.3 409 159-668 3-416 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 5E-106 1E-110 897.2 38.0 402 162-668 2-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 2E-105 5E-110 875.0 34.2 361 184-668 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 6E-101 1E-105 852.4 37.5 388 184-668 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 5.4E-98 1E-102 874.1 40.3 408 157-668 369-809 (835)
32 TIGR00117 acnB aconitate hydra 100.0 1E-96 2E-101 861.0 42.3 407 157-668 370-809 (844)
33 PLN00094 aconitate hydratase 2 100.0 2.2E-94 4.8E-99 839.5 40.3 408 157-668 442-883 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 2.4E-56 5.2E-61 440.5 8.5 124 772-895 1-124 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 7.1E-48 1.5E-52 430.9 23.9 413 160-703 374-822 (852)
36 KOG0454 3-isopropylmalate dehy 99.9 7.8E-26 1.7E-30 248.0 11.4 201 440-668 16-219 (502)
37 cd01578 AcnA_Mitochon_Swivel M 99.9 2.5E-25 5.3E-30 217.8 3.7 97 772-895 1-97 (149)
38 KOG0454 3-isopropylmalate dehy 99.9 4.2E-25 9.2E-30 242.3 4.9 420 158-667 66-498 (502)
39 PF00694 Aconitase_C: Aconitas 99.8 1.1E-20 2.4E-25 182.8 0.5 99 796-894 3-101 (131)
40 cd01579 AcnA_Bact_Swivel Bacte 99.4 8.8E-14 1.9E-18 133.6 1.0 75 772-894 1-75 (121)
41 cd00404 Aconitase_swivel Aconi 99.3 4.1E-13 8.8E-18 122.4 1.5 28 868-895 16-43 (88)
42 TIGR02084 leud 3-isopropylmala 99.2 6.2E-12 1.4E-16 125.6 0.6 71 771-894 4-74 (156)
43 PRK00439 leuD 3-isopropylmalat 99.1 1.1E-11 2.4E-16 124.7 0.6 72 770-894 4-75 (163)
44 PRK14023 homoaconitate hydrata 99.1 1.3E-11 2.8E-16 124.5 1.0 72 771-894 5-76 (166)
45 TIGR02087 LEUD_arch 3-isopropy 99.1 2.7E-11 5.9E-16 120.8 0.4 72 771-895 4-75 (154)
46 PLN00072 3-isopropylmalate iso 99.0 1.7E-10 3.6E-15 122.2 1.8 85 766-895 70-157 (246)
47 cd01577 IPMI_Swivel Aconatase- 98.9 3.9E-10 8.4E-15 103.7 1.0 28 868-895 18-45 (91)
48 PRK09238 bifunctional aconitat 98.8 3.4E-09 7.3E-14 127.5 6.3 80 762-889 163-242 (835)
49 PRK01641 leuD isopropylmalate 98.7 2.5E-09 5.4E-14 111.0 -0.3 86 767-894 9-94 (200)
50 cd01674 Homoaconitase_Swivel H 98.6 1.5E-08 3.3E-13 98.1 0.6 35 857-894 38-72 (129)
51 COG0066 LeuD 3-isopropylmalate 98.4 6.2E-08 1.3E-12 99.2 1.6 71 771-888 12-83 (191)
52 cd01576 AcnB_Swivel Aconitase 98.4 1.7E-07 3.7E-12 91.5 4.0 21 870-890 53-73 (131)
53 TIGR00171 leuD 3-isopropylmala 98.3 3E-07 6.5E-12 94.8 1.8 84 765-891 7-93 (188)
54 TIGR00117 acnB aconitate hydra 97.9 5.5E-06 1.2E-10 100.3 3.3 29 861-890 216-244 (844)
55 PLN00094 aconitate hydratase 2 96.1 0.0069 1.5E-07 74.5 5.4 33 857-890 283-315 (938)
56 PF04412 DUF521: Protein of un 95.6 0.035 7.5E-07 64.0 8.0 68 530-605 289-356 (400)
57 COG1679 Predicted aconitase [G 92.8 0.27 5.8E-06 56.0 7.3 68 530-605 289-356 (403)
58 PF06434 Aconitase_2_N: Aconit 89.8 0.12 2.7E-06 54.0 0.8 32 857-889 44-75 (204)
59 cd01355 AcnX Putative Aconitas 87.9 1.1 2.4E-05 51.7 6.8 69 531-610 279-347 (389)
60 COG1445 FrwB Phosphotransferas 34.7 41 0.0009 33.4 3.4 33 533-566 4-36 (122)
61 TIGR00829 FRU PTS system, fruc 32.1 28 0.0006 32.1 1.7 31 535-566 2-32 (85)
62 COG1049 AcnB Aconitase B [Ener 30.0 76 0.0016 39.1 5.1 37 857-894 212-248 (852)
63 PRK03600 nrdI ribonucleotide r 28.1 38 0.00082 33.7 2.0 28 613-640 56-86 (134)
64 PF07972 Flavodoxin_NdrI: NrdI 26.8 34 0.00074 33.8 1.4 42 598-640 41-85 (122)
65 PRK10427 putative PTS system f 22.4 68 0.0015 31.3 2.5 33 533-566 5-37 (114)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-270 Score=2198.14 Aligned_cols=790 Identities=72% Similarity=1.196 Sum_probs=779.0
Q ss_pred cCCchhhhcccccCCCCCceeeeeecCCCCCCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCcceEee
Q 002651 101 AEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPF 180 (896)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI~~ 180 (896)
++++|+...++|+..++ .|+||+|++|+ .++++||||||||||+++||||++.|++++||+||+|+....+..||+|
T Consensus 5 ~~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpF 81 (892)
T KOG0452|consen 5 SENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPF 81 (892)
T ss_pred ccccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeecc
Confidence 46899888889998764 79999999998 7899999999999999999999999999999999999988888899999
Q ss_pred ecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhh
Q 002651 181 KPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLK 260 (896)
Q Consensus 181 ~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLk 260 (896)
+|+||++|||||+||+||||+|||+++++|+||+||||.+|+|||||||+|+|+.++++|+++|+.+||+||+|||.|||
T Consensus 82 kPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlK 161 (892)
T KOG0452|consen 82 KPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLK 161 (892)
T ss_pred ccceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccceeCCCCceeccccccccceeeecCCCcccCCeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEee
Q 002651 261 WGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 340 (896)
Q Consensus 261 w~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~ 340 (896)
|+.++|+|+.++|||+||+|||||||||||||+.++++|||++|||||||||++|||++||||||||+||+|+|||++|.
T Consensus 162 Wgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmv 241 (892)
T KOG0452|consen 162 WGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMV 241 (892)
T ss_pred hhhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHH
Q 002651 341 LPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQ 420 (896)
Q Consensus 341 vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~ 420 (896)
+|+|||++|+|+|+++||++||+|+||++||+.|++||||||||+|+++||++||+||+||+||||||.||||+|+.|+.
T Consensus 242 lP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~ 321 (892)
T KOG0452|consen 242 LPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQ 321 (892)
T ss_pred cccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhccccc
Q 002651 421 YLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 500 (896)
Q Consensus 421 YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~ 500 (896)
||+.|||+++.++.+|.|+|+.++|++...++.++.|++++++||++|+|+|+||+||||+++|++|+++|+.||.+++|
T Consensus 322 yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vg 401 (892)
T KOG0452|consen 322 YLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVG 401 (892)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCccc
Confidence 99999999999999999999999999988788889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHH
Q 002651 501 FKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVV 580 (896)
Q Consensus 501 ~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V 580 (896)
|||+.++++.+.+.+.+.++|++++|.||+|+||+||||||+|||++|++|+||||||+++|++|+||+||+++|||.+|
T Consensus 402 FKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvV 481 (892)
T KOG0452|consen 402 FKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVV 481 (892)
T ss_pred ccccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchh
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHH
Q 002651 581 TKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 660 (896)
Q Consensus 581 ~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVa 660 (896)
+.||.++|++++|+++||.|+||||+|||||+|+|++++..+|++|++|+++|+|||||||||+||.+++||||||+||+
T Consensus 482 t~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvv 561 (892)
T KOG0452|consen 482 TKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVV 561 (892)
T ss_pred hhhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCC
Q 002651 661 AYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDP 740 (896)
Q Consensus 661 A~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~ 740 (896)
||||||+++|||++||||+++||+.|||+||||+++||++++++.|.|+||++.|+.|..|++.||+|++|++.+|+||+
T Consensus 562 aYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~ 641 (892)
T KOG0452|consen 562 AYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDP 641 (892)
T ss_pred hhhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchh
Q 002651 741 NSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEV 820 (896)
Q Consensus 741 ~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~ev 820 (896)
+||||++||||++|+.+++.+++|++|+||+.||||||||||||||+|.++|||+|||.+||+.|+||||||||||||||
T Consensus 642 ~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~v 721 (892)
T KOG0452|consen 642 KSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAV 721 (892)
T ss_pred CCceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 821 MARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 821 m~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
|.||||||||+.|+|+ ++.|+.|+|+|+||.++|||||++||++|+|+||+||++||+|||||||||||+||+
T Consensus 722 MaRGTFANIrlvNkl~-~k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlG 794 (892)
T KOG0452|consen 722 MARGTFANIRLVNKLL-SKVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLG 794 (892)
T ss_pred hhcccchhhHHHHHHh-cccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhh
Confidence 9999999999999999 499999999999999999999999999999999999999999999999999999986
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=5.2e-257 Score=2228.82 Aligned_cols=797 Identities=92% Similarity=1.430 Sum_probs=762.6
Q ss_pred hccCCchhhhcccccCCCCCceeeeeecCCCCCCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCcceE
Q 002651 99 MAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (896)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI 178 (896)
|...++|...+++|+++++++.|+||+|.++...++++|||||||||||+||||||..+++++|++|++|......+.||
T Consensus 39 m~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei 118 (936)
T PLN00070 39 MASENPFKGILTSLPKPGGGEFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEI 118 (936)
T ss_pred ccccCchhhhhheeeecCCCceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCcee
Confidence 43347886444778877212339999999986568999999999999999999999999999999999998766666799
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhh
Q 002651 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (896)
Q Consensus 179 ~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~f 258 (896)
+|+|+||+||||||+|+++||||||++++++|+||++|||.+||+||||||||+|++++++|+.+|+.+||+||.|||.|
T Consensus 119 ~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~f 198 (936)
T PLN00070 119 PFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAF 198 (936)
T ss_pred ccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccceeCCCCceeccccccccceeeecCCCcccCCeEEecCCCCcccCcccceecccChHHHHHHHcCCeEE
Q 002651 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMS 338 (896)
Q Consensus 259 Lkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~ 338 (896)
|||++++|+||+|||||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|++|+|||+|
T Consensus 199 lkw~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~ 278 (936)
T PLN00070 199 LKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMS 278 (936)
T ss_pred hhhhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEE
Confidence 99999999999999999999999999999999997689999999999999999999999999999999999999999999
Q ss_pred eecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHH
Q 002651 339 MVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVT 418 (896)
Q Consensus 339 ~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T 418 (896)
|++||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++|
T Consensus 279 ~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T 358 (936)
T PLN00070 279 MVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVT 358 (936)
T ss_pred eeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhccc
Q 002651 419 LQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNK 498 (896)
Q Consensus 419 ~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~ 498 (896)
++||+.|||++++++++++|+|+|+||+++..+|++|.|++++|||||+|||+||||++|||++||++++++|.+++..+
T Consensus 359 ~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~ 438 (936)
T PLN00070 359 LQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNK 438 (936)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccc
Confidence 99999999999999999999999999997666789999999999999999999999999999999999999999888766
Q ss_pred ccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcH
Q 002651 499 VGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSG 578 (896)
Q Consensus 499 ~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~ 578 (896)
++.+|+..+.++.....+++++|+++++++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~ 518 (936)
T PLN00070 439 VGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSG 518 (936)
T ss_pred ccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCH
Confidence 65555543333223334567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHH
Q 002651 579 VVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 658 (896)
Q Consensus 579 ~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~l 658 (896)
+|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+|+++++||+|+||||+|||||.+++||||||++
T Consensus 519 ~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~l 598 (936)
T PLN00070 519 VVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPL 598 (936)
T ss_pred HHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCcccc
Q 002651 659 VVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSW 738 (896)
Q Consensus 659 VaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~W 738 (896)
||||||+|+|+|||++||||+|+||++|||+||||+.+||++++++.++|+||.+.|.+++.+++.|++|++|++.+|+|
T Consensus 599 VaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~w 678 (936)
T PLN00070 599 VVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSW 678 (936)
T ss_pred HHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcc
Q 002651 739 DPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGND 818 (896)
Q Consensus 739 d~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~ 818 (896)
|++||||++||||++++.+++++.+|++||||+|+|||||||||||||+|+++||||+||++|||+++||||||||||||
T Consensus 679 d~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ 758 (936)
T PLN00070 679 DPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGND 758 (936)
T ss_pred CCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcc
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 819 EVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 819 evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
|||+||||+|||++|+|++|++||+|+|+|+||+|+|||+||+||++|+|+|||||+|||+|||||||||||+||+-
T Consensus 759 evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGv 835 (936)
T PLN00070 759 EIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGV 835 (936)
T ss_pred hhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999973
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=5.8e-254 Score=2200.43 Aligned_cols=796 Identities=69% Similarity=1.144 Sum_probs=758.7
Q ss_pred HHHHHhhhhccCCchhhhcccccCCCCCceeeeeecCCCCCCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhccc
Q 002651 91 RLERAFATMAAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWEN 170 (896)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~ 170 (896)
.|.|.+++ ..++|....++|+ ++ +.|+||+|.++...++++|||||||||||+||||||..+++++|++|++|..
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~ 78 (898)
T PTZ00092 4 QQLRMSSS--RPNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEE 78 (898)
T ss_pred eehhhccc--ccCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcc
Confidence 34555555 2378854336787 54 3799999999876689999999999999999999999999999999999987
Q ss_pred CCCCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHH
Q 002651 171 SAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQ 250 (896)
Q Consensus 171 ~~~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~ 250 (896)
....+.||+|+||||+||||||+||++|||||||+++++|+||.+|||.+||+|+|||+||++++++.+++.+|+.+||+
T Consensus 79 ~~~~~~ei~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~ 158 (898)
T PTZ00092 79 NSKKQIEIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFE 158 (898)
T ss_pred cCCCCceeeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCCeEEecCCCCcccCcccceecccChHHHHH
Q 002651 251 RNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA 330 (896)
Q Consensus 251 rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaea 330 (896)
||.|||.||+|++++|+||+|||||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|+|+
T Consensus 159 rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaea 238 (898)
T PTZ00092 159 RNLERFEFLKWGSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEA 238 (898)
T ss_pred hhHHHhChHHhhhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCccee
Q 002651 331 AMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMG 410 (896)
Q Consensus 331 amlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~g 410 (896)
+|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++|||||||
T Consensus 239 amlgq~~~~~vPevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~g 318 (898)
T PTZ00092 239 VMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMG 318 (898)
T ss_pred HHhcCcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccc
Q 002651 411 FFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKAD 490 (896)
Q Consensus 411 iFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 490 (896)
|||+|++|++||+.|||++++++++|+|.++|++|++ +|++|.|+++|+||||+|||+||||++|||++||++++++
T Consensus 319 ifp~De~T~~YL~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~ 395 (898)
T PTZ00092 319 FFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKD 395 (898)
T ss_pred EecCChhHHHHHHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCC
Confidence 9999999999999999999999999999999999974 5779999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCcee
Q 002651 491 WHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK 570 (896)
Q Consensus 491 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vk 570 (896)
|.+++....+.+++++..++....+++.++|.+++|.||+|+||||||||||||||+|+||++|||||+++|+||+||||
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk 475 (898)
T PTZ00092 396 FTACLSAPVGFKGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIK 475 (898)
T ss_pred HHHhhhhhhhhhccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCcc
Confidence 98877654444555543332222234456888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCc
Q 002651 571 TSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRA 650 (896)
Q Consensus 571 t~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~ 650 (896)
++|+|||++|++||+++||+++|+++||+|++||||+|||||++++++++++|++||+++++|+|+||||+|||||.+++
T Consensus 476 ~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~ 555 (898)
T PTZ00092 476 TSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRA 555 (898)
T ss_pred EEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccC
Q 002651 651 NYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSV 730 (896)
Q Consensus 651 ~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~ 730 (896)
||||||+|||||||+|+|+||+++||||+|+||++|||+||||+.+||+++++.+++|++|.+.|.+|+++++.|++|++
T Consensus 556 ~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~ 635 (898)
T PTZ00092 556 NYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQV 635 (898)
T ss_pred eEEcCHHHHHHHHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcc
Q 002651 731 PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNS 810 (896)
Q Consensus 731 ~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfns 810 (896)
+++++|+||++||||++||||++++.+++++.||++||||+|||||||||||||||+|+++||||+||+++||+|+||||
T Consensus 636 ~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfns 715 (898)
T PTZ00092 636 PKGKLYEWDEKSTYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNT 715 (898)
T ss_pred CCCCccccCCCCCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcchhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCC
Q 002651 811 YGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP 890 (896)
Q Consensus 811 ygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp 890 (896)
||||||||||||||||+|||++|+|+ |.+|++|+|+|+|++|+||||||+|+++|+|+|||||+|||+|||||||||+|
T Consensus 716 ygsrRgN~~vm~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~ 794 (898)
T PTZ00092 716 YGARRGNDEVMVRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGP 794 (898)
T ss_pred cccccCCchhhcceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred Ccccc
Q 002651 891 MLELK 895 (896)
Q Consensus 891 ~lL~~ 895 (896)
+||+-
T Consensus 795 ~~lGv 799 (898)
T PTZ00092 795 YLQGV 799 (898)
T ss_pred HHhCC
Confidence 99973
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=1.8e-251 Score=2175.39 Aligned_cols=768 Identities=65% Similarity=1.046 Sum_probs=737.9
Q ss_pred eeeeeecCCCC--CCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHHHH
Q 002651 120 FGKFYSLPALN--DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVV 197 (896)
Q Consensus 120 ~~~~~~l~~~~--~~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa~v 197 (896)
.|+||+|.+|+ ..++++|||||||||||+||||||..+++++|++|++|......+.||+|+||||+||||||+||++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 59999999985 3579999999999999999999999999999999999987666678999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCc
Q 002651 198 DLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSG 277 (896)
Q Consensus 198 dlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~G 277 (896)
|||||||+++++|+||.+|||.+||+|||||+||++.+++.+++.+|+.+||+||.|||.||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccceeeecCC----CcccCCeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeec
Q 002651 278 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 353 (896)
Q Consensus 278 I~HQV~lE~lA~vv~~~~----G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L 353 (896)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|+|++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHH
Q 002651 354 HNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA 433 (896)
Q Consensus 354 ~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~ 433 (896)
++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccccCCCCC-CCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccc
Q 002651 434 MVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQE 512 (896)
Q Consensus 434 lve~y~~~~~l~~~~~~~D-~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~ 512 (896)
++++|.|+|+||++ | ++|.|++++|||||+|||+||+|++|||++||+++++.|.+++..+.+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~~----d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFYD----DSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhcccccC----CCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 99999999999963 4 689999999999999999999999999999999999998887765433334432111
Q ss_pred cceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHH
Q 002651 513 KVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKY 592 (896)
Q Consensus 513 ~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~ 592 (896)
.....++|++..|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112256888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCC
Q 002651 593 LNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDF 672 (896)
Q Consensus 593 L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~ 672 (896)
|+++||+|++|||++||||+|+++++++++|.+|+++++||+|+||||+|||||.+++||||||+|||||||+|+|+|||
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCCCCccccCCCCCC
Q 002651 673 DKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFK 752 (896)
Q Consensus 673 ~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~ 752 (896)
++||||.|+||++|||+||||+.+||++++.+.|+++||++.|.+++.+++.|++|+++++++|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhh
Q 002651 753 DMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLV 832 (896)
Q Consensus 753 ~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~ 832 (896)
+++.+++++.+|++||||++||||||||||||||+|+++||||+||++|||+|+|||||||||||||||+||||+|||++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 833 NKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 833 N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
|+|++|.+||+|+|+|+|+.++||||||+|+++|+|||||||+|||+|||||||||+|++|+-
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv 776 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGV 776 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999873
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.7e-250 Score=2173.07 Aligned_cols=778 Identities=58% Similarity=0.968 Sum_probs=742.9
Q ss_pred CCchhhhcccccCCCCCceeeeeecCCCCC---CCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCcceE
Q 002651 102 EHPFKEILTALPKPGGGEFGKFYSLPALND---PRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEI 178 (896)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI 178 (896)
.++|. ..++|++.++ .|+||+|.+++. .++++|||||||||||+||||||..|++++|++|++|......+.||
T Consensus 3 ~~~~~-~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHK-TLKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCccc-cccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 46774 3467877654 799999999853 47999999999999999999999999999999999998766667899
Q ss_pred eeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhh
Q 002651 179 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAF 258 (896)
Q Consensus 179 ~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~f 258 (896)
+|+||||+|||+||+||++|||||||+++++|+||.++||.+||++||||+||++.+++.+|+.+|+.+||+||.|||.|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccceeCCCCceeccccccccceeeecC----CCcccCCeEEecCCCCcccCcccceecccChHHHHHHHcC
Q 002651 259 LKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 334 (896)
Q Consensus 259 Lkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~----~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg 334 (896)
|||++++|.||+|+|||+|||||||+||||+||+.+ +|+++||++|||||||||+||||+|||||||+|+|++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccC
Q 002651 335 QPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPV 414 (896)
Q Consensus 335 ~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~ 414 (896)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhh
Q 002651 415 DHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSC 494 (896)
Q Consensus 415 De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~ 494 (896)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++.+|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999975 57899999999999999999999999999999999999999887
Q ss_pred hcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEe
Q 002651 495 LDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLA 574 (896)
Q Consensus 495 l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~va 574 (896)
+......+++.... -.+....+.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~~----------~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKKA----------QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhccc----------ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 64332222221100 02345678899999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeec
Q 002651 575 PGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLA 654 (896)
Q Consensus 575 PGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLA 654 (896)
|||++|++||+++||+++|+++||+|++||||+||||+|+++++++++|++||+++++|+|+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CHHHHHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCC
Q 002651 655 SPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASK 734 (896)
Q Consensus 655 SP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~ 734 (896)
||+|||||||+|+|+|||++||||+++||++|||+||||+.+||++++++.++++||.+.|++++++++.|++|++++++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccc
Q 002651 735 LYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSR 814 (896)
Q Consensus 735 ~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsR 814 (896)
+|+||++||||++||||++|..+++++++|++||||++||||||||||||||+|+++||||+||++|||+++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 815 RGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 815 RgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
||||||||||||+|||++|+|+++.+||+|+|+|+|++|+||||||+|+++|+|+|||||+|||+|||||||||+|+||+
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 002651 895 K 895 (896)
Q Consensus 895 ~ 895 (896)
-
T Consensus 787 v 787 (889)
T PRK12881 787 V 787 (889)
T ss_pred C
Confidence 3
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=9.8e-249 Score=2154.46 Aligned_cols=776 Identities=62% Similarity=1.039 Sum_probs=743.6
Q ss_pred CchhhhcccccCCCCCceeeeeecCCCCC---CCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCcceEe
Q 002651 103 HPFKEILTALPKPGGGEFGKFYSLPALND---PRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIP 179 (896)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI~ 179 (896)
++|.. .++|++.++ .|+||+|.+|+. .++++|||||||||||+|||||++.+++++|++|++|......+.||+
T Consensus 5 ~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~~ei~ 81 (888)
T PRK09277 5 DSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPDREIP 81 (888)
T ss_pred Ccccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCCceee
Confidence 56643 466777654 799999988753 479999999999999999999999999999999999987666678999
Q ss_pred eecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhh
Q 002651 180 FKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFL 259 (896)
Q Consensus 180 ~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fL 259 (896)
|+||||+|||+||+||++|||||||+++++|+||++|||.+||+|||||+||++.+++.+++.+|+..||+||.|||.||
T Consensus 82 f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~fL 161 (888)
T PRK09277 82 FRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFL 161 (888)
T ss_pred eccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccceeCCCCceeccccccccceeeecC-CC--cccCCeEEecCCCCcccCcccceecccChHHHHHHHcCCe
Q 002651 260 KWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQP 336 (896)
Q Consensus 260 kw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~-~G--~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p 336 (896)
||++++|.||+|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|+|++|+|||
T Consensus 162 kw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~ 241 (888)
T PRK09277 162 KWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQP 241 (888)
T ss_pred HHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999977 78 9999999999999999999999999999999999999999
Q ss_pred EEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcH
Q 002651 337 MSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDH 416 (896)
Q Consensus 337 ~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De 416 (896)
+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++|||||+||||+|+
T Consensus 242 ~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De 321 (888)
T PRK09277 242 SSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDE 321 (888)
T ss_pred EEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhc
Q 002651 417 VTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLD 496 (896)
Q Consensus 417 ~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~ 496 (896)
+|++||+.|||++++++++|+|.++|++|+. +|++|.|++++|||||+|||+||+|++|||++||+++++.|.+++.
T Consensus 322 ~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~ 398 (888)
T PRK09277 322 ETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAE 398 (888)
T ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhch
Confidence 9999999999999999999999999999963 5789999999999999999999999999999999999998776532
Q ss_pred ccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecC
Q 002651 497 NKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPG 576 (896)
Q Consensus 497 ~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPG 576 (896)
. +.+++. .+..++|....|.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+||
T Consensus 399 ~--~~~~~~---------~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PG 467 (888)
T PRK09277 399 L--GVQGFG---------LDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPG 467 (888)
T ss_pred h--hhhhhh---------hhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCC
Confidence 1 122221 12335778889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCH
Q 002651 577 SGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASP 656 (896)
Q Consensus 577 S~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP 656 (896)
|++|++||+++||+++|+++||+|++||||+||||+|+++++++++|.+||++++||+|+||||+|||||..++||||||
T Consensus 468 S~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP 547 (888)
T PRK09277 468 SKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASP 547 (888)
T ss_pred CHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCcc
Q 002651 657 PLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLY 736 (896)
Q Consensus 657 ~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~ 736 (896)
+|||||||+|+|+|||++||||+|+||++|||+||||+.+||++++++.++++||.+.|.+++++++.|++|++++++.|
T Consensus 548 ~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~ 627 (888)
T PRK09277 548 PLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLY 627 (888)
T ss_pred HHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccC
Q 002651 737 SWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRG 816 (896)
Q Consensus 737 ~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRg 816 (896)
+||++||||++||||++++.+++++++|++||||+|+|||||||||||||+|+++||||+||+++||+++||||||||||
T Consensus 628 ~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRg 707 (888)
T PRK09277 628 DWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRG 707 (888)
T ss_pred ccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccc
Confidence 99999999999999999988888889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 817 NDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 817 N~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
|||||+||||+|||++|+|++|.+||+|+|+|+|+.|+||||||+||++|+|||||||+|||+|||||||||+|++|+-
T Consensus 708 N~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi 786 (888)
T PRK09277 708 NHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGV 786 (888)
T ss_pred cchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999873
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=5.6e-246 Score=2122.33 Aligned_cols=738 Identities=45% Similarity=0.785 Sum_probs=706.5
Q ss_pred eeeeeecC-CCC---CCCCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHH
Q 002651 120 FGKFYSLP-ALN---DPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPA 195 (896)
Q Consensus 120 ~~~~~~l~-~~~---~~~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa 195 (896)
.|+||+|. +|. ..++++|||||||||||+||||||..++++ |++|++|. .+.||+|+|+||+||||||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w~----~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIERK----RDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcCC----CCCeeccCcceeeeccccCcch
Confidence 69999996 664 347999999999999999999999999999 99999992 3579999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc-chHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCC
Q 002651 196 VVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPP 274 (896)
Q Consensus 196 ~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~-~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pP 274 (896)
++|||+|||+++++|+||++|||.+||+||||||||+|.++ +.+|+.+|+.+||+||.|||+|||||+++|+||+||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCceeccccccccceeeecCCCcccCCeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecC
Q 002651 275 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLH 354 (896)
Q Consensus 275 G~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~ 354 (896)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||||+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHH
Q 002651 355 NGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAM 434 (896)
Q Consensus 355 ~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~l 434 (896)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccc
Q 002651 435 VEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKV 514 (896)
Q Consensus 435 ve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~ 514 (896)
+|+|.|+|++|++ +|+++.|+++||||||+|||+||+|++|||++||+|+++.... .... .
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~--~-- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE--E-- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc--c--
Confidence 9999999999975 4679999999999999999999999999999999998752110 0000 0
Q ss_pred eeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHH
Q 002651 515 VKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLN 594 (896)
Q Consensus 515 ~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~ 594 (896)
..+| ++.||+|+||||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0123 5789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCC
Q 002651 595 EQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDK 674 (896)
Q Consensus 595 ~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~ 674 (896)
++||+|++||||+||||+|++.++++++|.+++++.++|+|+||||+||||+..+++|||||++||||||+|+|+|||++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCC
Q 002651 675 EPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDM 754 (896)
Q Consensus 675 eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~ 754 (896)
||||.|+||++|||+||||+.+||++++++.++++||++.|.+++++++ ++++.+++|+||++||||++||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999999887 788999999999999999999999988
Q ss_pred CCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhh
Q 002651 755 TMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNK 834 (896)
Q Consensus 755 ~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~ 834 (896)
+.++.||++||||++||||||||||||||+|+++||||+||++|||.++||||||+|||||||||||||+|+|++|+
T Consensus 618 ---~~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 ---LAGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred ---CCcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC--C--CCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 835 LLN--G--EVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 835 l~~--~--~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
|++ | ++|++|+|+|+|++++||||||+||++|+|||||||+|||+|||||||||+|++|+
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lG 758 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAG 758 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhC
Confidence 998 4 58999999999999999999999999999999999999999999999999999986
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=3.8e-244 Score=2084.13 Aligned_cols=753 Identities=62% Similarity=1.026 Sum_probs=724.8
Q ss_pred cccccCCCCCceeeeeecCCCCCC-CCCCCCceeeeehhhhhcccCCccccHHHHHHHHhcccCCCCcceEeeecceeee
Q 002651 109 LTALPKPGGGEFGKFYSLPALNDP-RIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKPARVLL 187 (896)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~lP~sirillE~~~R~~~~~~~~~~~vekil~~~~~~~~~~eI~~~pdrVl~ 187 (896)
.+++.+++. .|+||+|+++... .+.+||||+|||+||++|++|+ ++++++.++.|........||+|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 456777654 8999999999754 7999999999999999999998 899999999998665566799999999999
Q ss_pred ecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcccccc
Q 002651 188 QDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFH 267 (896)
Q Consensus 188 qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~ 267 (896)
|||||+|+++|+|+||++++++|+||.++||.+||+|+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCCceeccccccccceeeecCCCcccCCeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEE
Q 002651 268 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 347 (896)
Q Consensus 268 ~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV 347 (896)
||+|||||+||||||||||||+||+..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHHHHhcCC
Q 002651 348 KLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 427 (896)
Q Consensus 348 ~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR 427 (896)
+|+|+|++|||||||||+|+++||++||||||||||||||++||++||+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCC
Q 002651 428 SDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVP 507 (896)
Q Consensus 428 ~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~ 507 (896)
++++++++|+|+++|+||++. +|++|+|+++||||||+|+|+||||++|||+++|++++++|.+.+.....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~------- 391 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEI------- 391 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhc-------
Confidence 999999999999999999874 57899999999999999999999999999999999999998876543311
Q ss_pred ccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHc
Q 002651 508 KETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQS 587 (896)
Q Consensus 508 ~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~ 587 (896)
+..+...|+ ++.||+|+||+|||||||||||+|+||++|||||+++|++++|||||+|+|||++|.+||+++
T Consensus 392 ------~~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 392 ------KRVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred ------ccccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 011333444 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCc
Q 002651 588 GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (896)
Q Consensus 588 Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (896)
||+++|+++||++++|||||||||||+|++++++.|.+|++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCCCCccccCCCCccccC
Q 002651 668 VDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHE 747 (896)
Q Consensus 668 I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~ 747 (896)
|++|+++||+|.++||++|||+||||+.+||.+.+...+++++|.+.|.++|+ |+.++++++++|.|+++||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhccccccc
Q 002651 748 PPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFA 827 (896)
Q Consensus 748 pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfa 827 (896)
||||+++..++.+ |++||+|++||||||||||||||+|+++||||+||.++||+++||||||||||||||||||||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999999876643 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 828 NIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 828 Ni~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
|||++|+|+++ +||+|+|+|+|+ |||+||+||++|+|||||||+|||+|||||||||||+||+
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLG 759 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLG 759 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcC
Confidence 99999999988 999999999999 9999999999999999999999999999999999999996
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=2.3e-165 Score=1444.53 Aligned_cols=610 Identities=29% Similarity=0.444 Sum_probs=531.5
Q ss_pred cHHHHHHHHhcccCCC------------C-cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE
Q 002651 158 KKEDVEKIIDWENSAP------------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL 224 (896)
Q Consensus 158 ~~~~vekil~~~~~~~------------~-~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~l 224 (896)
.++++||||+.+.+.. + +.+|.++||||++||+||+++++||++| |.+ +|..|+++
T Consensus 19 ~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~v 87 (745)
T TIGR01340 19 PLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPASI 87 (745)
T ss_pred CcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCeE
Confidence 5789999999987632 2 3579999999999999999999999764 653 34456799
Q ss_pred EecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCC-eE
Q 002651 225 VIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SV 303 (896)
Q Consensus 225 viDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tv 303 (896)
++||++|++.... .|+..++.||.|+|+|++|++++| ||+|+|||+||||||++|+| ++|+ ++
T Consensus 88 ~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~~----------a~PG~~i 151 (745)
T TIGR01340 88 HCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLENY----------AFPGLMM 151 (745)
T ss_pred EeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhhc----------cCCCCeE
Confidence 9999999775433 467889999999999999999999 89999999999999999964 5786 69
Q ss_pred EecCCCCcccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEe
Q 002651 304 VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFH 383 (896)
Q Consensus 304 VGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~ 383 (896)
|||||||||+||||+|||||||+|++++|+|++|||++||||+|+|+|+|++|||||||||+|+++|+++|++||+|||+
T Consensus 152 vGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf~ 231 (745)
T TIGR01340 152 LGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEYF 231 (745)
T ss_pred EccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCChhhhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHH-HHHHHHHHccccccCCCCCCCCcccEEEE
Q 002651 384 GDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA-MVEGYLRANKMFVDYNEPQQERVYSSYLE 462 (896)
Q Consensus 384 G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~-lve~y~~~~~l~~~~~~~D~~a~Y~~vie 462 (896)
|||+++||+++|||||||++|+|||+||||+|++|++||+.+||+++..+ .++.|.. .+| .+|++|.|+++++
T Consensus 232 G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i~ 305 (745)
T TIGR01340 232 GPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELIE 305 (745)
T ss_pred CcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999975432 3333321 233 4789999999999
Q ss_pred EEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCC
Q 002651 463 LNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNT 542 (896)
Q Consensus 463 iDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~ 542 (896)
||||+|||+||+|++|||++||+|+++.+++ .|++ ..|+||||||||||
T Consensus 306 iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTNg 354 (745)
T TIGR01340 306 IDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTNS 354 (745)
T ss_pred EEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCCC
Confidence 9999999999999999999999999875432 1121 14779999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhcc
Q 002651 543 SNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVAST 622 (896)
Q Consensus 543 s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~ 622 (896)
|++|++. |+.++|+|+++ ++++.||++|+|||++|++||+++|++++|+++||.|.+||||+|+|+++++. .
T Consensus 355 r~~Dl~~-AA~ilk~a~~~--~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~-----~ 426 (745)
T TIGR01340 355 SYEDMSR-CASIVKDAEQA--GLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD-----D 426 (745)
T ss_pred CHHHHHH-HHHHhhhhhhC--CCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----c
Confidence 9999555 55566777654 66777999999999999999999999999999999999999999999987542 1
Q ss_pred ccCCCeeEEEeeccCCCCCCCCCC-CCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHH
Q 002651 623 ITDNDIVAAAVLSGNRNFEGRVHP-LTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEV 701 (896)
Q Consensus 623 i~~~~l~~~~VsSgNRNF~GR~gp-~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~ 701 (896)
+.+|+.+ ++|+|+||||+||||+ ..+.+|||||++||||||+|+|++|+++||| .|++|++|||+ ||+.+|+++.
T Consensus 427 ~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~~ 502 (745)
T TIGR01340 427 VKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPEK 502 (745)
T ss_pred cCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccchh
Confidence 4567754 6899999999999954 4578999999999999999999999999999 69999999999 7999999875
Q ss_pred hhccCCccccccccccccCCCcccccccCC--CCCccccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccc
Q 002651 702 VQSSVLPDMFKSTYEAITKGNPTWNQLSVP--ASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITT 779 (896)
Q Consensus 702 ~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~--~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTT 779 (896)
+| ..++..|+.+..+ .+..|+|+++||||++||+|++ |+..+|++||||+|+||+|||
T Consensus 503 --------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~-----~~~~~i~~a~vLlk~gd~iTT 562 (745)
T TIGR01340 503 --------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEP-----WNGKDLSGLRVLIKVTGKCTT 562 (745)
T ss_pred --------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCC-----CCcCCccCCeEEEEECCCcCh
Confidence 22 2456778877654 6789999999999999999964 466789999999999999999
Q ss_pred cccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcC--CCCCC--ceeecCCCceecH
Q 002651 780 DHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP--KTVHVPTGEKLSV 855 (896)
Q Consensus 780 DHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~--~~~g~--~t~~~p~g~~~~i 855 (896)
|||||||+ ||++| |+|.||+ +|.|.. +.+++ .|.+.|+|+.++|
T Consensus 563 DHIsPAG~---------~L~~r----------------------g~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~~ 610 (745)
T TIGR01340 563 DHISAAGP---------WLKYK----------------------GHLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGTI 610 (745)
T ss_pred hcccccch---------hHhhc----------------------CChhhhh-cceecccccccCCceeEEEcCCCCccch
Confidence 99999996 89995 4556665 566652 22344 5778889999999
Q ss_pred HHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 856 FDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 856 ~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
+++|++|++.++|+|||||+|||+|||||||||+|++|+-
T Consensus 611 ~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv 650 (745)
T TIGR01340 611 PELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGG 650 (745)
T ss_pred HHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999873
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=1.5e-146 Score=1278.14 Aligned_cols=546 Identities=33% Similarity=0.505 Sum_probs=484.7
Q ss_pred cHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EecCCCCCC
Q 002651 158 KKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDL-VIDHSVQVD 233 (896)
Q Consensus 158 ~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~l-viDHsv~~d 233 (896)
.++++||||+.+.... .+.+|.++||||++||+||++++++|++| |.++ ..+|. ++ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p~---~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTEL---SVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCCC---eEEECCCCCCCC
Confidence 3688999999987643 45679999999999999999999999765 8765 44453 44 899998876
Q ss_pred CccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCCeEEecCCCCccc
Q 002651 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMI 313 (896)
Q Consensus 234 ~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~ 313 (896)
. .||.|+|+|++|++++| |++|+|||+||||||++|+|++ +| +++|||||||||+
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~ 125 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTA 125 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcC
Confidence 3 59999999999999999 8999999999999999997764 44 7899999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
||||+|||||||+|++++|+|+++||++||||+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||++
T Consensus 126 GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~ 205 (646)
T PRK07229 126 GGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVP 205 (646)
T ss_pred CcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (896)
+|+|||||++|+|||+||||+|++|++||+.+||.+++.. + .+|++|.|+++++||||+|||+||
T Consensus 206 ~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDLs~leP~va 270 (646)
T PRK07229 206 ERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE----------L-----LADPDAEYDEVIEIDLSELEPLIA 270 (646)
T ss_pred HHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------c-----cCCCCCCeeEEEEEEccceeeeee
Confidence 9999999999999999999999999999999998765421 1 378999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHH
Q 002651 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (896)
Q Consensus 474 gP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~l 553 (896)
+|++|||++||+|+++. .|++||||||||||+||+++||++
T Consensus 271 ~P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~i 311 (646)
T PRK07229 271 GPHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASI 311 (646)
T ss_pred cCCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHH
Confidence 99999999999998731 278999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002651 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (896)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V 633 (896)
| +|+||++|||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++. + .++++ +|
T Consensus 312 L------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~-~-------~~~~~---~v 374 (646)
T PRK07229 312 L------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQA-P-------ATGNV---SL 374 (646)
T ss_pred h------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCC-C-------CCCcE---EE
Confidence 9 899999999999999999999999999999999999999999999999998543 2 23554 79
Q ss_pred eccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCcccccc
Q 002651 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKS 713 (896)
Q Consensus 634 sSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~ 713 (896)
+|+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |++|||+ ||+. ..++..+|.+
T Consensus 375 st~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~--------~~~~~~~~~~ 440 (646)
T PRK07229 375 RTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEG--------FAVDDAGIIA 440 (646)
T ss_pred EccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCcc--------ccCChhhhcC
Confidence 999999999999988999999999999999999999 999999987 9999997 7882 1234444432
Q ss_pred ccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCCh
Q 002651 714 TYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSP 793 (896)
Q Consensus 714 ~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~ 793 (896)
.++.|+.+++.. ++||+++|+|+++ +++.++|||+++||+||||||||||.
T Consensus 441 -------~~~~~~~~~~~~---------~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~------ 491 (646)
T PRK07229 441 -------PAEDGSDVEVVR---------GPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA------ 491 (646)
T ss_pred -------CCcccccccccC---------CCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc------
Confidence 345688777654 5788888888643 48999999999999999999999995
Q ss_pred HHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEe
Q 002651 794 TAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILA 873 (896)
Q Consensus 794 a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~viva 873 (896)
+||.+ |+|+|.|.|++|.+++ |.+ +.++|..+ ++||||
T Consensus 492 --~~l~~--------------r~~~~~l~~~~f~~~~--~~f-----------------------~~~~~~~~-~~iiVa 529 (646)
T PRK07229 492 --KWLPY--------------RSNIPNISEFVFEGVD--NTF-----------------------PERAKEQG-GGIVVG 529 (646)
T ss_pred --chhcc--------------CCCHHHHHHHHhccCC--hhh-----------------------hHHHHhcC-CcEEEe
Confidence 57764 8999999999998652 333 33577766 899999
Q ss_pred cCCCCCChhhhhhhcCCCcccc
Q 002651 874 GAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 874 G~~YG~GSSRdwAAkgp~lL~~ 895 (896)
|+|||+||||||||+++++|+-
T Consensus 530 G~nfG~GSSRE~Aa~a~~~lGv 551 (646)
T PRK07229 530 GENYGQGSSREHAALAPRYLGV 551 (646)
T ss_pred cCccCCCCchHHHHHHHHHHCC
Confidence 9999999999999999999863
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=5e-144 Score=1255.49 Aligned_cols=550 Identities=32% Similarity=0.475 Sum_probs=473.1
Q ss_pred HHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002651 160 EDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (896)
Q Consensus 160 ~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (896)
+++||||+.+.... .+.+|.++||||++||+||++++++|++| |.+ ++.|.+ +.+++||++|...
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCC--
Confidence 36899999886643 45689999999999999999999998765 543 344554 6789999988753
Q ss_pred chHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCCeEEecCCCCcccCcc
Q 002651 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGL 316 (896)
Q Consensus 237 ~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GgL 316 (896)
.||.|+|+||+|.+++| |+.|++||+||||||++|+|++ +| +++|||||||||+|||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~t~Gal 125 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFAA-----PG----KTLLGSDSHTPTAGGL 125 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhccC-----CC----CEEEecCcCcCCCCcc
Confidence 27889999999999999 5689999999999999997664 44 7899999999999999
Q ss_pred cceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhh
Q 002651 317 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRA 396 (896)
Q Consensus 317 Gvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRa 396 (896)
|+|||||||+|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+++|++||+|||+|||+++||+++||
T Consensus 126 G~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~ 205 (658)
T TIGR01342 126 GMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERA 205 (658)
T ss_pred cccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCC
Q 002651 397 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPK 476 (896)
Q Consensus 397 TIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~ 476 (896)
|||||++|+|||+||||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|+
T Consensus 206 Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~ 270 (658)
T TIGR01342 206 TITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEPH 270 (658)
T ss_pred hhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCCC
Confidence 9999999999999999999999999999998765321 1 479999999999999999999999999
Q ss_pred CCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHH
Q 002651 477 RPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAK 556 (896)
Q Consensus 477 ~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak 556 (896)
+|||++||+|+++ . .|++||||||||||++|+++||++|
T Consensus 271 ~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il-- 309 (658)
T TIGR01342 271 MPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL-- 309 (658)
T ss_pred CCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh--
Confidence 9999999999873 1 2568999999999999999999999
Q ss_pred HHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeecc
Q 002651 557 KACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSG 636 (896)
Q Consensus 557 ~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSg 636 (896)
+|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+ . ++++ +|+|+
T Consensus 310 ----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~-~-------~~~~---~vst~ 374 (658)
T TIGR01342 310 ----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAP-A-------SDGV---SLRSF 374 (658)
T ss_pred ----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCC-C-------CCcE---EEEcc
Confidence 8999999999999999999999999999999999999999999999999996543 2 3443 79999
Q ss_pred CCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeeccC-CCChhhHHHHhhccCCcccccccc
Q 002651 637 NRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDI-WPTTEEIAEVVQSSVLPDMFKSTY 715 (896)
Q Consensus 637 NRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~di-wP~~~Ei~~~~~~~v~~~~f~~~y 715 (896)
||||+||||+..+.+|||||++|||+||+|+| +|+.. |+.+ +| |+ ||+.++ |+.|...|
T Consensus 375 NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~~-~g------~~~~p~~~~----------p~~~~~~~ 434 (658)
T TIGR01342 375 NRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LADD-EG------DLEAIGFEM----------GEKFPGGY 434 (658)
T ss_pred CCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hccc-cC------cccCCCCCC----------chhhcccc
Confidence 99999999998889999999999999999999 56552 4322 44 45 887652 44565556
Q ss_pred ccccCCCcccccccC---CCCCccccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCC
Q 002651 716 EAITKGNPTWNQLSV---PASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDS 792 (896)
Q Consensus 716 ~~i~~~~~~w~~l~~---~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s 792 (896)
..++ |+.++. ++.+.+. ++||++||+|++++ .+|++ ||++++||+||||||+|||.+
T Consensus 435 ~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~---- 494 (658)
T TIGR01342 435 DAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD---- 494 (658)
T ss_pred cccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc----
Confidence 5433 777665 3334443 89999999998775 35766 999999999999999999964
Q ss_pred hHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEE
Q 002651 793 PTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIIL 872 (896)
Q Consensus 793 ~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~viv 872 (896)
||.+ |+|-+.+ +.++.+.++.+ +.+.+++|++.+.++|||
T Consensus 495 ----~l~~--------------r~~~~~l-------------------~~~~~~~~~p~---f~~~~~~~~~~~~~~iiV 534 (658)
T TIGR01342 495 ----ILKF--------------RSNIEAI-------------------SEFTLHRIDDE---FAERAKAADEKGKAGIII 534 (658)
T ss_pred ----cccc--------------CCCHHHH-------------------hhheeeCCCch---HHHHhhcccccCCceEEE
Confidence 6644 5544332 23344444444 348999999999999999
Q ss_pred ecCCCCCChhhhhhhcCCCcccc
Q 002651 873 AGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 873 aG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
||+|||+||||||||++|++|+-
T Consensus 535 aG~nfG~GSSREhAa~a~~~lGv 557 (658)
T TIGR01342 535 AGENYGQGSSREHAALAPMFLGV 557 (658)
T ss_pred cCCcCCCCccHHHHHHHHHHHCC
Confidence 99999999999999999999874
No 12
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-131 Score=1097.80 Aligned_cols=596 Identities=30% Similarity=0.462 Sum_probs=504.9
Q ss_pred cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhh
Q 002651 175 QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKE 254 (896)
Q Consensus 175 ~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~e 254 (896)
+..+.++||||+|||.|++||+++|.. .|... . .+|..++|||.+.+...+..| +.+.-+.|+|
T Consensus 82 ~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~k-v---avPstIhCdhli~a~~gg~~D-----l~~a~~~Nke 145 (778)
T KOG0453|consen 82 GSYLKLRPDRVAMQDASAQMALLQFMS-------SGLKK-V---AVPSTIHCDHLIEAQVGGDKD-----LQRASDLNKE 145 (778)
T ss_pred cceEEEcccceecccchhhHHHHHHHh-------cCccc-c---cCCceEEecceeeeccCCcch-----hhhhhhhhHH
Confidence 346899999999999999999999954 36653 2 357799999999988776554 5667789999
Q ss_pred hhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCC-eEEecCCCCcccCcccceecccChHHHHHHHc
Q 002651 255 RFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAML 333 (896)
Q Consensus 255 ry~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaaml 333 (896)
.|.||..+.++| ||.||+||+||+|||+||+| +||+ ++|||||||+++||||+|++||||+||+++|+
T Consensus 146 vydfl~saakky-gi~Fw~pGsGIiHQIvlEnY----------AfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA 214 (778)
T KOG0453|consen 146 VYDFLESAAKKY-GIGFWKPGSGIIHQIVLENY----------AFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMA 214 (778)
T ss_pred HHHHHHHHHHhc-CCCccCCCCceeeeeeeecc----------cCCcceEEeccCCCCCCCccceeeeccccchHHHHhc
Confidence 999999999988 79999999999999999955 4785 68999999999999999999999999999999
Q ss_pred CCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceeccc
Q 002651 334 GQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFP 413 (896)
Q Consensus 334 g~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp 413 (896)
++||.+++|+|+||+|||+|+.|+++|||||++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||
T Consensus 215 ~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP 294 (778)
T KOG0453|consen 215 TQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFP 294 (778)
T ss_pred CCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhh
Q 002651 414 VDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHS 493 (896)
Q Consensus 414 ~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~ 493 (896)
+|+.+++||+.|||.+. .+..++|+++ +. .+|++|.|+++||||||+|+|+|.||++||-..|++++.+...
T Consensus 295 ~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~- 366 (778)
T KOG0453|consen 295 YNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE- 366 (778)
T ss_pred CCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHhh-
Confidence 99999999999999974 3445556655 22 5899999999999999999999999999999999999875311
Q ss_pred hhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEE
Q 002651 494 CLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSL 573 (896)
Q Consensus 494 ~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~v 573 (896)
-+||+.+ |..++||||||+||+|+-.+|. ++++|..+|+|. .|.+.|
T Consensus 367 -------------------------kn~wp~~-----i~~gligSCTNSsyeDm~raa~-iv~~a~~~glk~--~v~F~V 413 (778)
T KOG0453|consen 367 -------------------------KNGWPIK-----IKVGLIGSCTNSSYEDMSRAAD-IVKQAKGKGLKP--KVPFYV 413 (778)
T ss_pred -------------------------hcCCcee-----eeeeEEEeecCccHHHHHHHHH-HHHHHHhcCCCC--CcceEe
Confidence 1456553 5578999999999999666655 569997776655 499999
Q ss_pred ecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCC-Ccee
Q 002651 574 APGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLT-RANY 652 (896)
Q Consensus 574 aPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~-~~~Y 652 (896)
+|||.+|+..++|+|+++.|+++|+.++..+||||||+|..- . |++||. .+.|+|+||||.||++... ...|
T Consensus 414 tpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~--d----vk~GE~-ntivts~NRNFtgRnd~np~t~af 486 (778)
T KOG0453|consen 414 TPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK--D----IKKGEK-NTIVTSYNRNFTGRNDANPATHAF 486 (778)
T ss_pred ccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc--c----ccCCCc-CceeeeecccccccCCCCcchhhc
Confidence 999999999999999999999999999999999999998651 1 344554 2348999999999997665 5679
Q ss_pred ecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCCccccccccccccCCCcccccccCCC
Q 002651 653 LASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA 732 (896)
Q Consensus 653 LASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~ 732 (896)
|+||++|+|+|++|++.||+++|.| .+.||+.|.|+. |..+|+++ +-++|. .+.|+......+
T Consensus 487 ltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~g--~~ty~ap~~~~~--------- 549 (778)
T KOG0453|consen 487 LTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDPG--QDTYQAPPSSSS--------- 549 (778)
T ss_pred ccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCCC--cccccCCCCCCC---------
Confidence 9999999999999999999999999 788999999998 89998875 334442 234443211111
Q ss_pred CCccccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccc
Q 002651 733 SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYG 812 (896)
Q Consensus 733 ~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsyg 812 (896)
......||+|+.++....|+ +|...|++++.||+|+.++|||||||-||+ ||++|||...-.|.+
T Consensus 550 ~~~v~v~p~s~rlqlLepF~-----~w~gkd~edl~ilikv~gkCttDhIsaaGp---------wlkY~Ghl~nisnn~- 614 (778)
T KOG0453|consen 550 VVEVDVDPTSDRLQLLEPFD-----KWDGKDLEDLKILIKVKGKCTTDHISAAGP---------WLKYRGHLENISNND- 614 (778)
T ss_pred cceeecCCcccchhhcCCCC-----cccccccccceEEEEEecccCccccccCCc---------ceeccchhhhcccch-
Confidence 23456789999999988885 577889999999999999999999999998 899977665433332
Q ss_pred cccCcchhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCc
Q 002651 813 SRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPML 892 (896)
Q Consensus 813 sRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~l 892 (896)
+ |-..|+-. .+-.+..+..+||..+|.+.|++||++|++||+|+|+|||+||||||||..||+
T Consensus 615 ---------~------igain~En--~e~n~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr~ 677 (778)
T KOG0453|consen 615 ---------L------IGAINKEN--GEANCVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRH 677 (778)
T ss_pred ---------h------hhhcchhh--hhhhhhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchhh
Confidence 0 11112111 122334566789999999999999999999999999999999999999999999
Q ss_pred cc
Q 002651 893 EL 894 (896)
Q Consensus 893 L~ 894 (896)
|+
T Consensus 678 lG 679 (778)
T KOG0453|consen 678 LG 679 (778)
T ss_pred cC
Confidence 86
No 13
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.7e-131 Score=1085.46 Aligned_cols=400 Identities=77% Similarity=1.215 Sum_probs=388.7
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002651 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (896)
Q Consensus 184 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~ 263 (896)
||+|||+||+|+++|||+|||+++++|+||+++||.+|++|++||++|++..+..+++.+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred ccccccceeCCCCceeccccccccceeeec----CCCcccCCeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEe
Q 002651 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFN----TNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 339 (896)
Q Consensus 264 ~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~----~~G~~~PdtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~ 339 (896)
++|.|++|+|||+||||||++|+||++++. +.|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 999999999999999999999999999984 3589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHH
Q 002651 340 VLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTL 419 (896)
Q Consensus 340 ~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~ 419 (896)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccc
Q 002651 420 QYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKV 499 (896)
Q Consensus 420 ~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~ 499 (896)
+++++||||+|||+||+|++|||++||.
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------- 264 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------- 264 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcC--------------
Confidence 6679999999999999999999999982
Q ss_pred cCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHH
Q 002651 500 GFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGV 579 (896)
Q Consensus 500 ~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~ 579 (896)
++|++||||||||+|+||++.||++|+|||++||+||+||||++|+|||++
T Consensus 265 -----------------------------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 265 -----------------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred -----------------------------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 136799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHH
Q 002651 580 VTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 659 (896)
Q Consensus 580 V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lV 659 (896)
|+++|+++|++++|+++||.|.+|||++|+|+++++.+.+++.+.+||+++++|+|+||||+||||+..+.+|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred HHHHHhCcc
Q 002651 660 VAYALAGTV 668 (896)
Q Consensus 660 aA~AlaG~I 668 (896)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 14
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=5.6e-128 Score=1125.54 Aligned_cols=592 Identities=22% Similarity=0.290 Sum_probs=456.6
Q ss_pred cHHHHHHHHhcccCCCCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002651 158 KKEDVEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (896)
Q Consensus 158 ~~~~vekil~~~~~~~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 237 (896)
+++++||||+.+.+...+..|.+++|++++||.|+++++..|.+ +|.+ ++ | +|+.+++||++++...++
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-------~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKA-------SGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHH-------cCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 46889999999977655667999999999999999988877754 4875 44 4 689999999999875443
Q ss_pred hHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCCeEEecCCCCcccCccc
Q 002651 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLG 317 (896)
Q Consensus 238 ~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GgLG 317 (896)
.|.++|.|++.++++| |+.|+|||+||||||++|+|++ +| +++|||||||| +||||
T Consensus 103 -------------~n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~-~GalG 158 (751)
T PRK11413 103 -------------INEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMREMMAG-----GG----KMILGSDSHTR-YGALG 158 (751)
T ss_pred -------------ccHHHHHHHHHHHHHc-CCcEECCCCCeECcCchhhccC-----CC----cEEEeeCcCcc-cchhh
Confidence 4456777777777777 4689999999999999996653 33 68999999996 99999
Q ss_pred ceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCc-cceEEEEecCccCCCChhhhh
Q 002651 318 VAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGV-VGKFVEFHGDGMGELSLADRA 396 (896)
Q Consensus 318 vlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gv-vgk~VEF~G~Gv~sLSv~dRa 396 (896)
+|||||||+|++.+|+|++|||++||+|+|+|+|+|++||+||||||+|+++|+++|+ +||+|||+||||++||+++|+
T Consensus 159 ~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~ 238 (751)
T PRK11413 159 TMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRN 238 (751)
T ss_pred hceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHHh
Confidence 9999999999999999999999999999999999999999999999999999999999 599999999999999999999
Q ss_pred hhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCC
Q 002651 397 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPK 476 (896)
Q Consensus 397 TIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~ 476 (896)
|||||++|+|||+||||+|++|++||+.++|.+++.+ | .+|++|.|+++++||||+|||+||+|+
T Consensus 239 TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~----------l-----~~D~~A~Yd~~ieiDLs~leP~VA~P~ 303 (751)
T PRK11413 239 GVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE----------L-----NPQPMAYYDGCISVDLSAIKPMIALPF 303 (751)
T ss_pred hhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee----------c-----cCCCCCCeeEEEEEEcccceeeecCCC
Confidence 9999999999999999999999999999999765321 1 479999999999999999999999999
Q ss_pred CCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCccccc--CCcEEEEEeccCCCCCChHHHHHHHHH
Q 002651 477 RPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGLV 554 (896)
Q Consensus 477 ~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~--~g~V~ia~IGSCTN~s~~dlm~aA~lL 554 (896)
+|||++||+|+.+++.++++.. +.++..+ ......+... . +|. .-.|+|||||||||||++|++.||++|
T Consensus 304 ~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~-~--ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~IL 375 (751)
T PRK11413 304 HPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLL-D--KIENGRLKVQQGIIAGCSGGNYENVIAAANAL 375 (751)
T ss_pred ChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhcccccc-c--cccCCCcEeeeEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999998888776532 1111110 0000111111 0 112 226889999999999999999999999
Q ss_pred HHHHHhcCCccC-CceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002651 555 AKKACELGLQVK-PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (896)
Q Consensus 555 ak~A~~kGlkV~-p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V 633 (896)
+|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+ .++++ +|
T Consensus 376 ------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~~--------~~ge~---~i 438 (751)
T PRK11413 376 ------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDTP--------ANNGL---SI 438 (751)
T ss_pred ------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCcC--------CCCCE---EE
Confidence 999997 5799999999999999999999999999999999999999999986442 34555 78
Q ss_pred eccCCCCCCCCCCCCCc-----eeecCHHHHHHHHHh-CccccCCCCCCcccCCCCCeeeeccCCCChhhHHHHhhccCC
Q 002651 634 LSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVL 707 (896)
Q Consensus 634 sSgNRNF~GR~gp~~~~-----~YLASP~lVaA~Ala-G~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~ 707 (896)
+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|-..+. ++ |.++ ..++
T Consensus 439 sTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p~---~~~~ 497 (751)
T PRK11413 439 RHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVPE---YAFD 497 (751)
T ss_pred eecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCCC---cccC
Confidence 99999999999998876 677779989999998 6994 5543321 01 1111 2233
Q ss_pred ccccc-cccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCccCcEEEEEecCCcc-ccccCCC
Q 002651 708 PDMFK-STYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSIT-TDHISPA 785 (896)
Q Consensus 708 ~~~f~-~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lGD~iT-TDHISPA 785 (896)
..+|. ..|..... +..+.-+..-|.|++++... ++.+-..++|++|+||+|| ||||+||
T Consensus 498 ~~~y~~~~~~~~~~------------------~~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~pa 558 (751)
T PRK11413 498 VTPYKNRVYQGFGK------------------GATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIPS 558 (751)
T ss_pred ccccccccccCCCC------------------CCCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCccccccccC
Confidence 33332 12211000 12234455556666554432 3456677899999999996 9999999
Q ss_pred CCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCC---ceeecCCCceecHHHHHHHH
Q 002651 786 GSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP---KTVHVPTGEKLSVFDAAMKY 862 (896)
Q Consensus 786 G~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~---~t~~~p~g~~~~i~daA~~y 862 (896)
|+ ||.+|++.++ ...=||. +..|.+. ++... .-....+|. +.+.|+.|
T Consensus 559 G~---------~l~~Rsn~~~--------------is~~~~~--~~d~~~~-~ra~~~~~~~~~~~~g~---~~~~~~~~ 609 (751)
T PRK11413 559 GE---------TSSYRSNPLG--------------LAEFTLS--RRDPGYV-GRSKAVAELENQRLAGN---VSELTEVF 609 (751)
T ss_pred CC---------ccccccCHHH--------------Hhhhhcc--ccChhhH-HHHHHHhhhhhhhhcCC---cHHHHHHH
Confidence 95 8999654443 1111111 1122222 10000 000011222 34556666
Q ss_pred --------------HHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 863 --------------KSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 863 --------------~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
++.|++|||+| +|||+||||||||..|++|+
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSREhAAla~r~LG 654 (751)
T PRK11413 610 ARIKQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAREQAASCQRVLG 654 (751)
T ss_pred HhhhhccccccccccccCceEEEEE-eCCCCCccHHHHHHHHHHhC
Confidence 56777877777 99999999999999999986
No 15
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=2.3e-125 Score=1098.76 Aligned_cols=574 Identities=25% Similarity=0.382 Sum_probs=437.5
Q ss_pred HHHHHHHHhccc-----CC--CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 002651 159 KEDVEKIIDWEN-----SA--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQ 231 (896)
Q Consensus 159 ~~~vekil~~~~-----~~--~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~ 231 (896)
|+.+|||++.+. +. ..+.+|.++||++|+||.|+++++ +|. ++|.+ +.++|.. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCCC-ccCCCCC-EEEEcCCCCC
Confidence 578899999886 22 245678999999999999999853 453 35764 5778864 7889999999
Q ss_pred CCCccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCC-eEEecCCCC
Q 002651 232 VDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 310 (896)
Q Consensus 232 ~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHT 310 (896)
.... +|.+.|+|++..+++| ||+|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~---------------~~~~~~~~l~~fAkk~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSD---------------KNLKKYKNIEEFAKKH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCH---------------HHHHHHHHHHHHHHHh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 8752 3445555555555566 689999999999999999 8899996 579999999
Q ss_pred cccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEec--CccC
Q 002651 311 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHG--DGMG 388 (896)
Q Consensus 311 tm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G--~Gv~ 388 (896)
||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|+++|+++|++||+|||+| |||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCChhhhhhhhccccccCcceecccCcHHHHHHHHhcCCChh--------HHHHHHHHHH---HccccccCCCCCCCCcc
Q 002651 389 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVAMVEGYLR---ANKMFVDYNEPQQERVY 457 (896)
Q Consensus 389 sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~--------~~~lve~y~~---~~~l~~~~~~~D~~a~Y 457 (896)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...|. +..+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999976311 0011111111 001111 2258999999
Q ss_pred cEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEec
Q 002651 458 SSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAIT 537 (896)
Q Consensus 458 ~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IG 537 (896)
+++++||||+|+|+||+|++|++++||+++... +. .|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~~-------------------------~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------DI-------------------------KIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------Cc-------------------------eeeeEEEe
Confidence 999999999999999999999999999997420 11 36799999
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhcC---CccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCC
Q 002651 538 SCTNTSNPSVMLGAGLVAKKACELG---LQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD 614 (896)
Q Consensus 538 SCTN~s~~dlm~aA~lLak~A~~kG---lkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~ 614 (896)
||||+|++|+++||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|+++||.|..+||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888773 7899999999999999999999999999999999999999999999999988
Q ss_pred CChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCCCeeeeccCCCC
Q 002651 615 LDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 694 (896)
Q Consensus 615 l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~ 694 (896)
+.++ +++ +|+|+||||+||||+..+.+|||||++||||||+|+| +||..+.. + +-||.
T Consensus 409 ~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~I-----tdPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI-----SGPAEVLS---P----EGWTE 466 (712)
T ss_pred CCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCcc-----CCHHHHhc---c----ccccc
Confidence 7543 454 7899999999999988899999999999999999999 45543210 0 00221
Q ss_pred h-----hhHHHHhhccCCccccccccccc---cCCCcccccccCCCCCccccCCCCccccC--CCCCCCCCCCCCCCCCc
Q 002651 695 T-----EEIAEVVQSSVLPDMFKSTYEAI---TKGNPTWNQLSVPASKLYSWDPNSTYIHE--PPYFKDMTMDPPGAHGV 764 (896)
Q Consensus 695 ~-----~Ei~~~~~~~v~~~~f~~~y~~i---~~~~~~w~~l~~~~~~~~~Wd~~styi~~--pp~f~~~~~~~~~~~~i 764 (896)
. +.+.......++++++...-..+ ....+.-.+...+. +.-+.+ .|-++ +.++.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-------~~~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILE-------GFPEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCC-------CCCce
Confidence 0 00000001112222331110000 00001001111111 111111 22232 23466
Q ss_pred cCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCce
Q 002651 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 844 (896)
Q Consensus 765 ~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t 844 (896)
...+++.+.||+|+||||.|+. ||....+++ |.|-+-.|.+++
T Consensus 531 i~g~v~~~~gdnI~TD~I~P~~----------~~~~~~~~~-------------~~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYPGK----------YTYQDDVPK-------------EKMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccchh----------hcccCCCCH-------------HHHHHhhccCCC--------------
Confidence 7889999999999999999987 662211111 122222333221
Q ss_pred eecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 845 VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 845 ~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
| +++.++++. -|||||+|||+|||||||+.++++++
T Consensus 574 ---p--------~f~~~~~~g---~iiVaG~NfG~GSSREhA~~al~~~G 609 (712)
T TIGR00139 574 ---A--------EFRTKAHEG---DILVSGFNFGCGSSREQAATAILAKG 609 (712)
T ss_pred ---c--------chhhcCCCC---CEEEeCCccCCCCcHHHHHHHHHHcC
Confidence 1 455666653 39999999999999999999988775
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2.4e-121 Score=1030.56 Aligned_cols=452 Identities=25% Similarity=0.377 Sum_probs=394.4
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002651 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT- 235 (896)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 235 (896)
.++++|||++.+.... .+..+.++|||+++||+|+++++..| |+ +|. +.++|. ++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~---~~----~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFEGL---RQ----AGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHHHH---HH----cCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 3688999999987743 45668899999999999999997443 33 463 466676 699999999999763
Q ss_pred -cchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCccc
Q 002651 236 -RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (896)
Q Consensus 236 -~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (896)
+..++...|+..++.+|.+||.+ +| +++.|||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------RL--FDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------ee--eccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 56667888999999999999875 22 45679999999999999 899999 6899999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (896)
+|+|||||++|+|||+||||+|++|++||+.+++... .++|.+++.+|+.. .+|++|.|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va 289 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVT 289 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeec
Confidence 9999999999999999999999999999998876543 36788888888753 579999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCc--ccccCCcEEEEEeccCCCCCChHHHHHH
Q 002651 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP--AELKHGSVVIAAITSCTNTSNPSVMLGA 551 (896)
Q Consensus 474 gP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~--~~l~~g~V~ia~IGSCTN~s~~dlm~aA 551 (896)
+|++|+|++||+++.+++....... ++......++|.|.. ..+.+++|++||||||||||++|++.||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA 359 (465)
T TIGR00170 290 WGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA 359 (465)
T ss_pred CCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999876554432110 000111122232221 1366889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEE
Q 002651 552 GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAA 631 (896)
Q Consensus 552 ~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~ 631 (896)
++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++++.++ +++
T Consensus 360 ~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~--- 423 (465)
T TIGR00170 360 AVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER--- 423 (465)
T ss_pred HHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---
Confidence 998 9999999999999999999999999999999999999999999999999999888654 444
Q ss_pred EeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 632 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 632 ~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+++|+||||+||||+. ..+|||||++||||||+|+|
T Consensus 424 ~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~i 459 (465)
T TIGR00170 424 CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHF 459 (465)
T ss_pred EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCcee
Confidence 5789999999999984 57899999999999999999
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=4.3e-121 Score=1029.79 Aligned_cols=452 Identities=27% Similarity=0.394 Sum_probs=399.0
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002651 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (896)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (896)
.++++|||++.+.... .+++|.++|||+++||+|+++++.+|++| |. .++||.++ .+++||++|++.++
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 4789999999987643 34489999999999999999999998653 53 58899875 68999999999732
Q ss_pred ---chHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCC-eEEecCCCCcc
Q 002651 237 ---SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 312 (896)
Q Consensus 237 ---~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHTtm 312 (896)
..+....|+.+++.+|.++|.+ +| +++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------RL--FDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------ee--eccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3346678888999999998864 22 45678999999999999 8999996 69999999999
Q ss_pred cCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCCh
Q 002651 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSL 392 (896)
Q Consensus 313 ~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv 392 (896)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccc
Q 002651 393 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCI 472 (896)
Q Consensus 393 ~dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~V 472 (896)
++|+|||||++|+|||+||||+|++|++||+.++|.++. ++|.+++..|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 4788888888653 57999999999999999999999
Q ss_pred cCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcc--cccCCcEEEEEeccCCCCCChHHHHH
Q 002651 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA--ELKHGSVVIAAITSCTNTSNPSVMLG 550 (896)
Q Consensus 473 AgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~--~l~~g~V~ia~IGSCTN~s~~dlm~a 550 (896)
|+|++|||++||+|+.+++.++++.. ++......++|++... .+.+..|+|||||||||||+||++.|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999998887765421 0001112234433321 26678999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeE
Q 002651 551 AGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVA 630 (896)
Q Consensus 551 A~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~ 630 (896)
|++| ||+||+||||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|++++++++ ||+
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999877543 555
Q ss_pred EEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 631 ~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+|+|+||||+||||+ ...+|||||++||||||+|+|
T Consensus 426 -~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I 461 (471)
T PRK12466 426 -CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHI 461 (471)
T ss_pred -EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEe
Confidence 689999999999999 456799999999999999999
No 18
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=5.8e-122 Score=1038.68 Aligned_cols=456 Identities=41% Similarity=0.636 Sum_probs=369.4
Q ss_pred HHHHHHHhcccCCC----CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002651 160 EDVEKIIDWENSAP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (896)
Q Consensus 160 ~~vekil~~~~~~~----~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (896)
|..|||++.+.... .+.+|.++|||+++||+||++++.+|++| |. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~-------g~--~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAM-------GE--KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHH-------CH--CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHC-------CC--ceecCCC-ceEEecCccccccc
Confidence 46788988876632 34579999999999999999999999776 32 2556664 89999999999976
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCC-ceeccccccccceeeecCCCcccCC-eEEecCCCCccc
Q 002651 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMI 313 (896)
Q Consensus 236 ~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~-GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHTtm~ 313 (896)
+.. |+..++.+|+++|+|++|.+++|+ +.+++||. ||||||++| .|++.|+ ++|||||||||+
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~ 135 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTY 135 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchh
Confidence 433 788899999999999999999985 55555555 999999999 7888995 799999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
||||+||||||++|++++|++|++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||++
T Consensus 136 GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~ 215 (465)
T PF00330_consen 136 GALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMD 215 (465)
T ss_dssp GGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HH
T ss_pred hhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (896)
+|||||||++|+||++||||+|++|++||+.++|.++..++.+.|.+.+.|+ +|++|.|+++++||||+|||+||
T Consensus 216 ~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va 290 (465)
T PF00330_consen 216 DRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVA 290 (465)
T ss_dssp HHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE
T ss_pred hhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCccccccc
Confidence 9999999999999999999999999999999999988777778888888876 78899999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCC--CcccccCCcEEEEEeccCCCCCChHHHHHH
Q 002651 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG--QPAELKHGSVVIAAITSCTNTSNPSVMLGA 551 (896)
Q Consensus 474 gP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g--~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA 551 (896)
+|++|||++||+|+.+++.++++.. . +......++|++ ...++.+++|++||||||||||+||+++||
T Consensus 291 ~P~~P~~~~~v~e~~~~~~~~~~~v-~---------~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA 360 (465)
T PF00330_consen 291 GPHSPDNVVPVSEVAPDFASILDPV-E---------REAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAA 360 (465)
T ss_dssp -SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHH
T ss_pred cCCCCcccccccccccccccccccc-c---------ccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHH
Confidence 9999999999999999988765421 1 111122345533 335788999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccC-CCeeE
Q 002651 552 GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITD-NDIVA 630 (896)
Q Consensus 552 ~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~-~~l~~ 630 (896)
++|+++|+ ++|+||||++|+|||++|++||+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 361 ~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~-- 430 (465)
T PF00330_consen 361 GILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV-- 430 (465)
T ss_dssp HHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE--
T ss_pred HHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce--
Confidence 99988776 799999999999999999999999999999999999999999999999996 3222 222 444
Q ss_pred EEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhC
Q 002651 631 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 666 (896)
Q Consensus 631 ~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG 666 (896)
+|+|+||||+||||+..+.+|||||++||||||+|
T Consensus 431 -~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 -CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp -EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred -EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 79999999999999999999999999999999998
No 19
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=1.2e-120 Score=1026.05 Aligned_cols=452 Identities=26% Similarity=0.369 Sum_probs=398.0
Q ss_pred cHHHHHHHHhcccCCC-CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002651 158 KKEDVEKIIDWENSAP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT- 235 (896)
Q Consensus 158 ~~~~vekil~~~~~~~-~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 235 (896)
.++++|||++.+.+.. .+..+.+++||+++||+|+++++..|. ++|. ++++|+. +.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~-------~~g~--~v~~p~~-~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGLR-------LAGR--KVRRPDL-TFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHHH-------HcCC--CccCCCC-eEEEcCCCCCCCccc
Confidence 3688999999987643 455688999999999999999985543 3464 4778874 78899999999975
Q ss_pred -cchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCccc
Q 002651 236 -RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (896)
Q Consensus 236 -~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (896)
...++...|+.+++.+|.+||.| .| +++.+||+||||||++| .|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGI------TL--FDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCC------ee--eccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 46677788999999999999876 12 45567899999999999 889999 7899999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
||||+|||||||+|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|+.+|++|++|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (896)
+|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++..|+.. .+|++|.|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va 289 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVT 289 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeec
Confidence 999999999999999999999999999999544332 577899999998754 579999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCc--ccccCCcEEEEEeccCCCCCChHHHHHH
Q 002651 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP--AELKHGSVVIAAITSCTNTSNPSVMLGA 551 (896)
Q Consensus 474 gP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~--~~l~~g~V~ia~IGSCTN~s~~dlm~aA 551 (896)
+|++|||++||+|+..++.++++... +.......+|++.. ..+.+++|+|||||||||||++|+++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA 359 (466)
T PRK05478 290 WGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466)
T ss_pred CCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHH
Confidence 99999999999999998887765431 11111223343221 1367889999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEE
Q 002651 552 GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAA 631 (896)
Q Consensus 552 ~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~ 631 (896)
++| ||+||+||||++|+|||++|++||+++|++++|+++||.|.+||||+|+|++++.. .+|++
T Consensus 360 ~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~--- 423 (466)
T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER--- 423 (466)
T ss_pred HHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---
Confidence 999 99999999999999999999999999999999999999999999999999985542 45776
Q ss_pred EeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 632 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 632 ~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+|+|+||||+||||+.. .+|||||++||||||+|+|
T Consensus 424 ~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~I 459 (466)
T PRK05478 424 CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHF 459 (466)
T ss_pred EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCc
Confidence 78899999999999654 5899999999999999999
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=7.2e-120 Score=1004.37 Aligned_cols=409 Identities=33% Similarity=0.520 Sum_probs=364.9
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002651 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (896)
Q Consensus 184 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~ 263 (896)
||++||+||++++++|++| |.+ +.++| .++++||++|++.++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~~-~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GLP-KVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CCC-CCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 653 45555 488999999998776544 4667889999999999999
Q ss_pred ccccccceeCCCCceeccccccccceeeecCCCcccCC-eEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeecC
Q 002651 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (896)
Q Consensus 264 ~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vP 342 (896)
++| ||+|+|||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 998 8999999999999999994 56786 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHHH
Q 002651 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (896)
Q Consensus 343 evVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL 422 (896)
|+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|+|||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCC
Q 002651 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (896)
Q Consensus 423 ~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~ 502 (896)
+.++|+++ .+++++|. ++.++ +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99999866 67888886 34443 7899999999999999999999999999999999999864331
Q ss_pred CCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002651 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (896)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~ 582 (896)
.|++ -+|+|||||||||||+||+. +|+.++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~-~AA~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMG-RAASIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHH-HHHHHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1111 14789999999999999955 55567799999999999 89999999999999
Q ss_pred HHHHcCchHHHHhcCcEEeccCcccccCCCCC-CChhhhccccCCCeeEEEeeccCCCCCCCCC-CCCCceeecCHHHHH
Q 002651 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGD-LDESVASTITDNDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVV 660 (896)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~-l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~g-p~~~~~YLASP~lVa 660 (896)
||+++||+++|.++||.|.+|||++|+|++++ .. .+++.. ++|||+||||+|||| .....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-------~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDI-------KKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCccc-------CCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 22 223321 378999999999994 445679999999999
Q ss_pred HHHHhCcc
Q 002651 661 AYALAGTV 668 (896)
Q Consensus 661 A~AlaG~I 668 (896)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=3e-115 Score=961.45 Aligned_cols=380 Identities=27% Similarity=0.428 Sum_probs=343.4
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002651 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (896)
Q Consensus 184 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~ 263 (896)
|+++||+|+++++.. ||+ +|.+ ..+||++ +.+++||++|++. ....|+.+++.+|.++|.
T Consensus 1 ~~~~hD~t~p~a~~~---~~~----~g~~-~v~dp~k-~~~~~DH~vp~~~-----~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFEG---LRE----AGRE-KVWDPEK-IVAVFDHNVPTPD-----IKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHHH---HHH----hCCc-ccCCCCc-eEEEcCCCCCCCC-----HHHHHHHHHHHHHHHHhC------
Confidence 689999999999744 333 4543 3566664 7899999999983 345566667777776553
Q ss_pred ccccccceeCC-CCceeccccccccceeeecCCCcccC-CeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeec
Q 002651 264 SAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (896)
Q Consensus 264 ~~f~~i~v~pP-G~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~v 341 (896)
|+++++ |+||||||++| +|++.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 344567 99999999999 788888 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHH
Q 002651 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (896)
Q Consensus 342 PevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~Y 421 (896)
||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|+|||||++|+|||+||||+|++|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccC
Q 002651 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (896)
Q Consensus 422 L~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~ 501 (896)
|+.++|++. + .+ .+|++|.|+++++||||+|||+||+|++|||++||+|+.+.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999988632 1 12 47999999999999999999999999999999999998731
Q ss_pred CCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002651 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (896)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~ 581 (896)
.|+|||||||||||+||+++||++| ||+||+||||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 2679999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHH
Q 002651 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (896)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA 661 (896)
++|+++|++++|+++||.|.+|||++|+|+++++. .+||+ +|+|+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987763 45675 689999999999999888999999999999
Q ss_pred HHHhCcc
Q 002651 662 YALAGTV 668 (896)
Q Consensus 662 ~AlaG~I 668 (896)
+||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=7.2e-115 Score=964.44 Aligned_cols=404 Identities=28% Similarity=0.442 Sum_probs=362.9
Q ss_pred HHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccc
Q 002651 160 EDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRS 237 (896)
Q Consensus 160 ~~vekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~ 237 (896)
+++||||+.+.+.. .+..+.+++|++++||.|+++++..|. ++|.+ +.+||++ +.+++||++|+....
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~~-~v~~P~~-v~~~~DH~~p~~~~~- 70 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGID-KVFDPER-IVIVVDHVVPASTIK- 70 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCCC-cCCCCCc-EEEEcCCCCCCCChh-
Confidence 36899999987642 455688999999999999999987764 34754 5788875 888999999988643
Q ss_pred hHHHHHhhHHHHHHhhhhhhhhhhccccccccc-eeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCcccCc
Q 002651 238 ENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (896)
Q Consensus 238 ~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~-v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~Gg 315 (896)
.+.+++..++|.| ++ ||. |++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 71 -~a~~~~~~r~fa~--------~~------gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 71 -AAEMQKLAREFVK--------KT------GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred -HHHHHHHHHHHHH--------Hc------CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 3445556666666 22 354 789999999999999 888999 689999999999999
Q ss_pred ccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhh
Q 002651 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (896)
Q Consensus 316 LGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dR 395 (896)
||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+++|+.+|++||+|||+|||+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCC
Q 002651 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (896)
Q Consensus 396 aTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (896)
+|||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999999765421 12 47999999999999999999999999
Q ss_pred CCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHH
Q 002651 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (896)
Q Consensus 476 ~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLa 555 (896)
++|||++||+++.+ . .|+|||||||||||++|+++||++|
T Consensus 271 ~~Pdnv~~v~~~~g--------------~-------------------------~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEG--------------I-------------------------EVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCC--------------C-------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 99999999999863 1 2679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeec
Q 002651 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (896)
Q Consensus 556 k~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsS 635 (896)
+|+||+||||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++...+ .+|++ +|+|
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l-------~~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVL-------APGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 89999999999999999999999999999999999999999999999999975543 34565 7899
Q ss_pred cCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 636 gNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+||||+||||+..+.+|||||++||||||+|+|
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 408 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRI 408 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCccc
Confidence 999999999988889999999999999999999
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=2.2e-114 Score=962.03 Aligned_cols=406 Identities=30% Similarity=0.457 Sum_probs=363.6
Q ss_pred cHHHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002651 158 KKEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (896)
Q Consensus 158 ~~~~vekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (896)
.++.+||||+.+.+.. .+..+.+++|++++||.|+++++..|.+ +|.+ ..+||++ +.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-------~g~~-~v~~P~~-~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEK-------IGGD-KVFDPSK-IVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCCC-ccCCCCc-EEEECCCCCCCCCh
Confidence 3688999999987753 4556889999999999999999877643 4654 4778875 88899999999864
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhccccccccc-eeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCccc
Q 002651 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (896)
Q Consensus 236 ~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~-v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (896)
..+.+++..++|.| +| ||+ |++||+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~-------------~~-gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAK-------------EQ-GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHH-------------Hc-CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 33445566666655 22 455 788999999999999 788899 6899999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (896)
+|+|||||++|+|||+||||+|++|++||+.+++.+.. .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~l----~~D~~a~Y~~~i~iDls~leP~va 271 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDYK------------PW----KSDEDAEYEEVYEIDLSKLEPQVA 271 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhcccccc------------cc----cCCCCCCEEEEEEEEcccceeeee
Confidence 99999999999999999999999999999998643311 12 479999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHH
Q 002651 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (896)
Q Consensus 474 gP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~l 553 (896)
+|++|||++||+++++. .|+|||||||||||+||+++||++
T Consensus 272 ~P~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~eDl~~aA~i 312 (418)
T PRK00402 272 APHLPDNVKPVSEVEGT---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEI 312 (418)
T ss_pred cCCCccceeEchhhCCc---------------------------------------eeeEEEEecCCCCChHHHHHHHHH
Confidence 99999999999998731 267999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002651 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (896)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V 633 (896)
| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+|||++|+|++...+ .+|++ +|
T Consensus 313 l------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~v 376 (418)
T PRK00402 313 L------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVL-------APGEV---CL 376 (418)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EE
Confidence 9 99999999999999999999999999999999999999999999999999865443 23565 78
Q ss_pred eccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 634 sSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+|+||||+||||+..+.+|||||++||||||+|+|
T Consensus 377 sT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~i 411 (418)
T PRK00402 377 STTNRNFKGRMGSPESEVYLASPAVAAASAVTGKI 411 (418)
T ss_pred EecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCee
Confidence 99999999999988889999999999999999999
No 24
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=9.8e-115 Score=955.24 Aligned_cols=379 Identities=36% Similarity=0.577 Sum_probs=349.1
Q ss_pred ceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhc
Q 002651 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (896)
Q Consensus 183 drVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~ 262 (896)
|++++||.|+++++..|+ ++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999987764 45775 356663 7889999999874 2778899999999
Q ss_pred cccccccceeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeec
Q 002651 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 341 (896)
Q Consensus 263 ~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~v 341 (896)
+++| ||++++||+|||||+++|+|+ .| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~~~----------~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLERFA----------VPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhhcc----------CCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 9999 699999999999999999554 56 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHH
Q 002651 342 PGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQY 421 (896)
Q Consensus 342 PevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~Y 421 (896)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+++|+|||||++|+||++||||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccC
Q 002651 422 LKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (896)
Q Consensus 422 L~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~ 501 (896)
|+.+||.+++.. + .+|++|.|+++++||||+|||+||+|++|||++||+|+++.
T Consensus 205 l~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~----------- 258 (380)
T cd01585 205 LAAQGREDDWVE----------L-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAGI----------- 258 (380)
T ss_pred HHhcCCchhccc----------c-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCCc-----------
Confidence 999998654311 2 47999999999999999999999999999999999998730
Q ss_pred CCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 002651 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (896)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~ 581 (896)
+|+|||||||||+|++|+++||++| ||+||+||||++|+|||++|+
T Consensus 259 ----------------------------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 259 ----------------------------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred ----------------------------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 3779999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHH
Q 002651 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (896)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA 661 (896)
++|+++|++++|+++||.|.+|||++|+|+++.+ .+|++ +|+|+||||+||||+..+.+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~--------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAP--------PTGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCC--------CCCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 9999999999999999999999999999997653 24555 789999999999998888999999999999
Q ss_pred HHHhCcc
Q 002651 662 YALAGTV 668 (896)
Q Consensus 662 ~AlaG~I 668 (896)
|||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=2.9e-114 Score=959.57 Aligned_cols=404 Identities=28% Similarity=0.408 Sum_probs=364.4
Q ss_pred HHHHHHHHhcccCCC--CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCcc
Q 002651 159 KEDVEKIIDWENSAP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 236 (896)
Q Consensus 159 ~~~vekil~~~~~~~--~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~ 236 (896)
|+++||||+.+.+.. .+..+.+++|++++||.|+++++..|. ++| .++++|++ +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 468999999987643 455788999999999999999987764 346 56888886 788999999998643
Q ss_pred chHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCcccCc
Q 002651 237 SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 315 (896)
Q Consensus 237 ~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~Gg 315 (896)
.+..++..++|.| +| |+++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~-------------~~-gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAK-------------EH-GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHH-------------Hc-CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 3334444555544 22 577789999999999999 889999 579999999999999
Q ss_pred ccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhh
Q 002651 316 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADR 395 (896)
Q Consensus 316 LGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dR 395 (896)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCC
Q 002651 396 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGP 475 (896)
Q Consensus 396 aTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP 475 (896)
+|||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++|||++|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFR------------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccc------------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 999999999999999999999999999999886421 22 47999999999999999999999999
Q ss_pred CCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHH
Q 002651 476 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 555 (896)
Q Consensus 476 ~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLa 555 (896)
++|||++|++++++. .|++||||||||++++|+++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998731 2569999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeec
Q 002651 556 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 635 (896)
Q Consensus 556 k~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsS 635 (896)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+|||++|+|++..++ .+|++ +|+|
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999985543 34665 6899
Q ss_pred cCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 636 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 636 gNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+||||+||||+..+.+|||||++|||+||+|+|
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~i 407 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYI 407 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCcc
Confidence 999999999988889999999999999999999
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=5.3e-113 Score=949.33 Aligned_cols=408 Identities=31% Similarity=0.459 Sum_probs=362.7
Q ss_pred HHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002651 159 KEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (896)
Q Consensus 159 ~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (896)
|+++|||++.+.+.. .+..|.+++|++++||.|+++++..|. ++|. ++.+||++ +.+++||++|+..
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~~-v~~~~DH~vpa~~- 70 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPDR-VALVPDHFTPNKD- 70 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCCC-EEEEeCCCCCCCC-
Confidence 468999999997643 455788999999999999999987763 4565 45788885 8889999999985
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCC-ceeccccccccceeeecCCCcccC-CeEEecCCCCccc
Q 002651 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (896)
Q Consensus 236 ~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~-GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (896)
...+..++..++|.| ++++++ |+++|+ |||||+++| +|++.| +++|||||||||+
T Consensus 71 -~~~a~~~~~~r~fa~--------~~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 71 -IKSAEQCKMMREFAR--------EQGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred -HHHHHHHHHHHHHHH--------HcCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 344556666777777 333332 577885 999999999 899999 5799999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (896)
+|+|||||++|+||++||||+|++|++||+.+++++ .+ .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999765443 11 12 479999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHH
Q 002651 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (896)
Q Consensus 474 gP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~l 553 (896)
+|++|||++||+|++.. |. +|++|||||||||+++|+++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------g~-------------------------~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------EI-------------------------KIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------cC-------------------------ccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998620 11 366999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002651 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (896)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V 633 (896)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++.+.. .+||+ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l-------~~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGIL-------AEGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EE
Confidence 9 99999999999999999999999999999999999999999999999999884443 34554 78
Q ss_pred eccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 634 sSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+|+||||+||||...+.+|||||++|||+||+|+|
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 413 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYI 413 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCc
Confidence 99999999999966678999999999999999999
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-108 Score=889.39 Aligned_cols=409 Identities=30% Similarity=0.448 Sum_probs=360.1
Q ss_pred HHHHHHHHhcccCCC--C-cceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc
Q 002651 159 KEDVEKIIDWENSAP--K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT 235 (896)
Q Consensus 159 ~~~vekil~~~~~~~--~-~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~ 235 (896)
++..|||++.+.+.. . ++.+.+++|++|+||.|+|.|+.-| +++|. ++++|++ +.+++||++|++..
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 788999999987643 2 2446789999999999999987554 44576 5788875 78899999999965
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCC-CceeccccccccceeeecCCCcccC-CeEEecCCCCccc
Q 002651 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (896)
Q Consensus 236 ~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG-~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (896)
.. +.+++..+ +|.++| ++ +.|++.| +||||||.+| +|++.| ++|||+||||||+
T Consensus 73 ~~--a~~~~~lr---~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KA--AEQQKELR---ENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HH--HHHHHHHH---HHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 43 33444444 444432 33 3456778 9999999999 999999 5899999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
||||+||+|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCcccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCIS 473 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VA 473 (896)
+|||||||++|+||++|+|+||++|++||+.... +...|+.. .+|+||.|+++++||+|+|||+|+
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~~-------------a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWDG-------------AVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHHhc-------------ccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 9999999999999999999999999999993321 11234332 579999999999999999999999
Q ss_pred CCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHH
Q 002651 474 GPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGL 553 (896)
Q Consensus 474 gP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~l 553 (896)
+|++|+|+++++++.++. + .|+++|||||||+|++||++||++
T Consensus 275 ~p~~p~nv~~v~e~~~~~--------------i-----------------------~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPDP--------------I-----------------------KIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCCc--------------e-----------------------eeceEEEeccCCccHHHHHHHHHH
Confidence 999999999999986421 1 367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEe
Q 002651 554 VAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAV 633 (896)
Q Consensus 554 Lak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~V 633 (896)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||++|+|++.+... +||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~-------~gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLG-------PGER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCC-------CCCE---Ee
Confidence 9 899999999999999999999999999999999999999999999999999866644 4555 68
Q ss_pred eccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 634 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 634 sSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
||+||||+||||+..+.+||+||+++||+|++|+|
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i 416 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEI 416 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEe
Confidence 99999999999977788999999999999999999
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=5e-106 Score=897.23 Aligned_cols=402 Identities=24% Similarity=0.355 Sum_probs=350.7
Q ss_pred HHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccch
Q 002651 162 VEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSE 238 (896)
Q Consensus 162 vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~ 238 (896)
+||||+.+.+.. .+..|.+++|++++||.||++++..|.. +|. +++||++ +.+++||++|+... .
T Consensus 2 ~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-------~~~--~v~d~~~-~v~~~DH~~p~~~~--~ 69 (436)
T cd01581 2 AQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-------LAC--LGFSADL-VMQSFCHTAAYPKP--V 69 (436)
T ss_pred hHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-------cCC--cccCCcc-EEEEcCCCCCCCCH--H
Confidence 799999987643 4567889999999999999999877743 454 4688875 78899999999854 3
Q ss_pred HHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCC-eEEecCCCCcccCccc
Q 002651 239 NAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLG 317 (896)
Q Consensus 239 ~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLG 317 (896)
.+.+++..++|.++. ++.|++||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 ~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga-- 122 (436)
T cd01581 70 DVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG-- 122 (436)
T ss_pred HHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc--
Confidence 444677777777732 367899999999999887 34786 57999999999986
Q ss_pred ceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHH----H--------HHhcCccceEEEEecC
Q 002651 318 VAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQ----M--------LRKHGVVGKFVEFHGD 385 (896)
Q Consensus 318 vlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~----~--------Lr~~Gvvgk~VEF~G~ 385 (896)
||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|+. . ++.+|++||+|||.
T Consensus 123 -~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~-- 199 (436)
T cd01581 123 -ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE-- 199 (436)
T ss_pred -eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC--
Confidence 79999999999999999999999999999999999999999999998754 3 23334689999995
Q ss_pred ccCCCChhhhhhhhccccccCcceecccCcHHH-HHHHHhc----------CCCh-----hHHHHHHHHHHHccccccCC
Q 002651 386 GMGELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----ETVAMVEGYLRANKMFVDYN 449 (896)
Q Consensus 386 Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T-~~YL~~t----------gR~~-----~~~~lve~y~~~~~l~~~~~ 449 (896)
|+++||+++|+|||||++|+|||+||||+|++| ++||+.+ ||++ .+.++++.|.+++.+|
T Consensus 200 Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 275 (436)
T cd01581 200 GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL---- 275 (436)
T ss_pred CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc----
Confidence 599999999999999999999999999999988 8999996 5542 3456778888888777
Q ss_pred CCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccC
Q 002651 450 EPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKH 528 (896)
Q Consensus 450 ~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~ 528 (896)
.+|++|.|+++++||||+| ||+||+|++|||++||+|+.+ .
T Consensus 276 ~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g--------------~------------------------ 317 (436)
T cd01581 276 EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG--------------K------------------------ 317 (436)
T ss_pred cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC--------------C------------------------
Confidence 4799999999999999999 999999999999999999863 1
Q ss_pred CcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccc
Q 002651 529 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTC 608 (896)
Q Consensus 529 g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~C 608 (896)
.|+++||||||| +++|++.||.+| ||+|+++ ||++|+|||++|+++|+++|++++|+++||.|.+||||+|
T Consensus 318 -~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~~-vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C 388 (436)
T cd01581 318 -KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLC 388 (436)
T ss_pred -ccceEEEecCCC-CHHHHHHHHHHH------cCCCCCC-CCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCccccc
Confidence 256899999999 999999999999 9999754 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 609 IGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 609 iGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
+|+.+.+ .+||+ +|+|+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 389 ~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 389 MGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred cCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 9985543 56776 789999999999999 678999999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=2.3e-105 Score=875.02 Aligned_cols=361 Identities=32% Similarity=0.491 Sum_probs=319.3
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002651 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (896)
Q Consensus 184 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~ 263 (896)
.+++||.|+++++. |. ++|. ++.++|++ +.+++||++|+.... .+..++..++|.|
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak------------ 56 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAK------------ 56 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH------------
Confidence 37999999998764 42 3575 46888875 788999999998532 2334444444444
Q ss_pred ccccccceeCCCCceeccccccccceeeecCCCcccCC-eEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeecC
Q 002651 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (896)
Q Consensus 264 ~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vP 342 (896)
+| +|+|++||+||||||++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 57 -~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 57 -KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred -Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 44 578899999999999999 8899996 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHHH
Q 002651 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (896)
Q Consensus 343 evVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL 422 (896)
|+|+|+|+|+|++||++|||+|+|+++|+.+|++||+|||+|||+++||+++|+|||||++|+|||++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCC
Q 002651 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (896)
Q Consensus 423 ~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~ 502 (896)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 557999999999999999999999999998520
Q ss_pred CCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcC-CccCCceeEEEecCcHHHH
Q 002651 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LQVKPWVKTSLAPGSGVVT 581 (896)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kG-lkV~p~Vkt~vaPGS~~V~ 581 (896)
+ -+|++||||||||+|++|++.||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ~-------------------------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 N-------------------------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred C-------------------------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 1 1367999999999999999999999943333322 3399999999999999999
Q ss_pred HHHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHH
Q 002651 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (896)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA 661 (896)
++|+++|++++|.++||.|.+|||++|+|+++++.+ ++|+ +|+|+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLE-------PGEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999988643 3565 689999999999998888999999999999
Q ss_pred HHHhCcc
Q 002651 662 YALAGTV 668 (896)
Q Consensus 662 ~AlaG~I 668 (896)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=6.4e-101 Score=852.42 Aligned_cols=388 Identities=38% Similarity=0.611 Sum_probs=353.6
Q ss_pred eeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCccchHHHHHhhHHHHHHhhhhhhhhhhcc
Q 002651 184 RVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGS 263 (896)
Q Consensus 184 rVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~ 263 (896)
||++||+||++++.+|+. +|.+.+.+||. ++.+++||++|++. .+|.++|+|++|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~-------~~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEI-------LAALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHH-------cCCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 799999999999988754 45532466665 69999999999963 27788889999999
Q ss_pred ccccccceeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCcccCcccceecccChHHHHHHHcCCeEEeecC
Q 002651 264 SAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (896)
Q Consensus 264 ~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~GgLGvlg~GVGg~Eaeaamlg~p~~~~vP 342 (896)
++|+ ++|++||+|||||+++|++ ..| ++++||||||||+||||++|||+|++|++++|++|++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 8885 8999999999999999954 345 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChhhhhhhhccccccCcceecccCcHHHHHHH
Q 002651 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (896)
Q Consensus 343 evVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~T~~YL 422 (896)
++++|+|+|+|++||++|||+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhHHHHHHHHHHHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCC
Q 002651 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFK 502 (896)
Q Consensus 423 ~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~ 502 (896)
+.++|++... .++.|.+. + .+|++|.|+++|+|||++|||+||+|++|||++|++++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~---l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE---L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc---c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999987544 34444332 2 4799999999999999999999999999999999999763
Q ss_pred CCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 002651 503 GFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK 582 (896)
Q Consensus 503 g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~ 582 (896)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 13779999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCchHHHHhcCcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHH
Q 002651 583 YLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 662 (896)
Q Consensus 583 ~l~~~Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~ 662 (896)
+++++|++++|+++||.|..+||++|+|+++++.. +|++ +|+|+||||+||||+..+.+|||||++|||+
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~-------~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVA-------DGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCC-------CCcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 99999999999999999999999999999988743 3554 6899999999999998889999999999999
Q ss_pred HHhCcc
Q 002651 663 ALAGTV 668 (896)
Q Consensus 663 AlaG~I 668 (896)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=5.4e-98 Score=874.06 Aligned_cols=408 Identities=23% Similarity=0.333 Sum_probs=357.7
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002651 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (896)
Q Consensus 157 ~~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d 233 (896)
..++++|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. ..++|+. |.+++||.+|..
T Consensus 369 ~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~~ 438 (835)
T PRK09238 369 KGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAYP 438 (835)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCCC
Confidence 45799999999887643 45678899999999999999986554 56676 5777775 788999999988
Q ss_pred CccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCCe-EEecCCCCcc
Q 002651 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (896)
Q Consensus 234 ~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pdt-vVGTDSHTtm 312 (896)
.. .++..++..++|.++. |+.+++||+||||||+ +|+++||+ ++||||||||
T Consensus 439 ~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl-----------~~~~~Pg~vivG~DSHT~t 491 (835)
T PRK09238 439 KP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRF 491 (835)
T ss_pred CH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeecc-----------cccccCCeEEEecccccCC
Confidence 53 4555677777777732 3456889999999996 34789986 5999999999
Q ss_pred cCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHh------------cCccceEE
Q 002651 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKFV 380 (896)
Q Consensus 313 ~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~------------~Gvvgk~V 380 (896)
+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|++||+|
T Consensus 492 ~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~l 568 (835)
T PRK09238 492 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568 (835)
T ss_pred CCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEE
Confidence 997 789999999999999999999999999999999999999999999999443333 34689999
Q ss_pred EEecCccCCCChhhhhhhhccccccCcceeccc-CcHHHHHHHHhc----------CCC-----hhHHHHHHHHHHHccc
Q 002651 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRS-----DETVAMVEGYLRANKM 444 (896)
Q Consensus 381 EF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp-~De~T~~YL~~t----------gR~-----~~~~~lve~y~~~~~l 444 (896)
||. |+++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||+ +.+++.+++|++.+.+
T Consensus 569 Ef~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~l 646 (835)
T PRK09238 569 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPEL 646 (835)
T ss_pred EEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhccc
Confidence 995 6999999999999999999999999999 778889999986 764 2356788999998888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCc
Q 002651 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (896)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (896)
| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+++.
T Consensus 647 l----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~--------------------------------- 689 (835)
T PRK09238 647 L----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT--------------------------------- 689 (835)
T ss_pred c----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC---------------------------------
Confidence 8 4799999999999999999 9999999999999999998731
Q ss_pred ccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEecc
Q 002651 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (896)
Q Consensus 524 ~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (896)
.|++||||||| |+++|++.||.+| ||+++++.||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 690 ------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~p 756 (835)
T PRK09238 690 ------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMP 756 (835)
T ss_pred ------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25689999999 9999999999999 9999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 604 GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
||++|+||++.+ .+|++ +|||+||||+||||+ .+.+|||||++|||+||+|+|
T Consensus 757 GCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I 809 (835)
T PRK09238 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRI 809 (835)
T ss_pred cchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCcc
Confidence 999999996543 56776 689999999999997 568999999999999999999
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=1e-96 Score=861.02 Aligned_cols=407 Identities=23% Similarity=0.342 Sum_probs=356.0
Q ss_pred ccHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCC
Q 002651 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (896)
Q Consensus 157 ~~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d 233 (896)
.+++.+|||++.+.+.. .+..|..++|.|++||.||++++..| +++|. .+++|++ +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhCC--ceECCCc-EEEEeCCCCCCC
Confidence 46899999999987642 45678899999999999999997665 44555 4777765 788999999887
Q ss_pred CccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCCe-EEecCCCCcc
Q 002651 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (896)
Q Consensus 234 ~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pdt-vVGTDSHTtm 312 (896)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 34556777778887742 345789999999999776 457875 6999999999
Q ss_pred cCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHh------------cCccceEE
Q 002651 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRK------------HGVVGKFV 380 (896)
Q Consensus 313 ~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~------------~Gvvgk~V 380 (896)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|.+||+|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999654442 34689999
Q ss_pred EEecCccCCCChhhhhhhhccccccCcceecccCcHH-HHHHHHhc----------CCCh-----hHHHHHHHHHHHccc
Q 002651 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVAMVEGYLRANKM 444 (896)
Q Consensus 381 EF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~-T~~YL~~t----------gR~~-----~~~~lve~y~~~~~l 444 (896)
||. |+++||+++|+|||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++.+.+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 59999999999999999999999999999975 89999995 7654 357788999988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCc
Q 002651 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (896)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (896)
| .+|++|.|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 4799999999999999999 9999999999999999998631
Q ss_pred ccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEecc
Q 002651 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (896)
Q Consensus 524 ~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (896)
.|++||||||| |+.+|++.||.+| ||+++++ ||++|+|||++|+++|+++|++++|.++||.|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 25589999999 7999999999999 9999988 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 604 GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
||++|+||++.+ .+|++ +|||+||||+||||+ ...+|||||++|||+||+|+|
T Consensus 757 GCg~C~Gn~~~v--------~~Ge~---vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I 809 (844)
T TIGR00117 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKI 809 (844)
T ss_pred ccccccCCCCcC--------CCCCE---EEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCccc
Confidence 999999996654 34565 688999999999998 557999999999999999999
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=2.2e-94 Score=839.48 Aligned_cols=408 Identities=22% Similarity=0.310 Sum_probs=353.0
Q ss_pred ccHHHHHHHHhcccCC----CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCC
Q 002651 157 VKKEDVEKIIDWENSA----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQV 232 (896)
Q Consensus 157 ~~~~~vekil~~~~~~----~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~ 232 (896)
..++.+|||++.+.+. ..+..|..++|.|++||.||++++..| +++|.. .++|++ |.+++||.+|+
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~ef-------kel~~~--~~dpdk-v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDEL-------KDLACL--GFSADL-VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhccc--ccCccc-EEEEccCCCCC
Confidence 4589999999998754 245678899999999999999997665 444432 345543 68899999888
Q ss_pred CCccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCC-eEEecCCCCc
Q 002651 233 DVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 311 (896)
Q Consensus 233 d~~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSHTt 311 (896)
... .++..++..++|.++. |+.+++||+|||||++.| ++.|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 5556667777777732 355789999999998755 66786 5899999999
Q ss_pred ccCcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHH------HHHHh------cCccceE
Q 002651 312 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVT------QMLRK------HGVVGKF 379 (896)
Q Consensus 312 m~GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~------~~Lr~------~Gvvgk~ 379 (896)
+..|+ ++|.|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+ ++|+. .+.+||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 88776 458899999999999999999999999999999999999999999997 44443 3458999
Q ss_pred EEEecCccCCCChhhhhhhhccccccCcceecccCcH-HHHHHHHh----------cCCC-----hhHHHHHHHHHHHcc
Q 002651 380 VEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DETVAMVEGYLRANK 443 (896)
Q Consensus 380 VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De-~T~~YL~~----------tgR~-----~~~~~lve~y~~~~~ 443 (896)
||| +|+++||+++|+|||||++|+||++|+||+|+ .|++||+. +|+. +++++.+|+|++.+.
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 4543 345778999999888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCC
Q 002651 444 MFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 522 (896)
Q Consensus 444 l~~~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~ 522 (896)
+| .+|++|+|+++||||||+| ||+||+|++|||++||+|+.+ .
T Consensus 720 ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--------------~------------------ 763 (938)
T PLN00094 720 LL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--------------D------------------ 763 (938)
T ss_pred cc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC--------------C------------------
Confidence 88 5799999999999999999 999999999999999999863 1
Q ss_pred cccccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEec
Q 002651 523 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 602 (896)
Q Consensus 523 ~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~ 602 (896)
.|++||||||| |+++|++.||.+| +|+|+++.||++|+|||++|+++|+++|++++|.++||.|..
T Consensus 764 -------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~ 829 (938)
T PLN00094 764 -------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEM 829 (938)
T ss_pred -------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcC
Confidence 25689999999 7999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 603 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 603 ~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
||||+|+||++.+ .+|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|
T Consensus 830 PGCg~CmG~~g~l--------~~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~I 883 (938)
T PLN00094 830 PGCSLCMGNQARV--------AEKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRL 883 (938)
T ss_pred CccccccCCCCcC--------CCCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCcc
Confidence 9999999996664 35665 789999999999998 568999999999999999999
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=2.4e-56 Score=440.52 Aligned_cols=124 Identities=72% Similarity=1.083 Sum_probs=121.8
Q ss_pred EecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCCc
Q 002651 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (896)
Q Consensus 772 ~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~ 851 (896)
+|||+||||||||||+|+++||||+||.++||+++||||||||||||||||||||+|||++|+|++|++|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 852 ~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
+++|||+||+||++|+|||||||+|||+||||||||+++++|+-
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi 124 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGV 124 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999864
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=7.1e-48 Score=430.91 Aligned_cols=413 Identities=25% Similarity=0.375 Sum_probs=323.6
Q ss_pred HHHHHHHhcccCC---CCcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCCc-
Q 002651 160 EDVEKIIDWENSA---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT- 235 (896)
Q Consensus 160 ~~vekil~~~~~~---~~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~~- 235 (896)
+.++|+.++.-+. ..+..+..+..-|-.||.||+|.-.+|..| +-+|.+ +|+|+..+..+..+
T Consensus 374 TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfs---------aD~vmQSfCHTAayp 440 (852)
T COG1049 374 TLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFS---------ADLVMQSFCHTAAYP 440 (852)
T ss_pred cHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhccc---------chhhhhhcccccccC
Confidence 3456666664332 245678888899999999999984444322 334554 35555544333221
Q ss_pred cchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccCCeE-EecCCCCcccC
Q 002651 236 RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMID 314 (896)
Q Consensus 236 ~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~Pdtv-VGTDSHTtm~G 314 (896)
...+-..+...-.|-- +++++. ..||.||||.+. +.++.|||| .|+||||.+.=
T Consensus 441 kpvdv~th~~Lp~Fi~-------------~rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRfpi 495 (852)
T COG1049 441 KPVDVKTHHTLPDFIM-------------NRGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRFPI 495 (852)
T ss_pred CccchhccccchHHHh-------------hcCcee-cCCCCccHHHHH-----------HhccCCcceecCCcccccccc
Confidence 2112111222222322 344444 348999999986 568899985 89999999987
Q ss_pred cccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHH------HHHhc------CccceEEEE
Q 002651 315 GLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQ------MLRKH------GVVGKFVEF 382 (896)
Q Consensus 315 gLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~------~Lr~~------Gvvgk~VEF 382 (896)
|+ +++.|+-=++.+.+++.+.|.+||+|.|+++|+++||+|-+|||..|-- .|..+ =..|+++|.
T Consensus 496 Gi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEi 572 (852)
T COG1049 496 GI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEI 572 (852)
T ss_pred cc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEe
Confidence 65 5677777788888899999999999999999999999999999988742 23311 136999999
Q ss_pred ecCccCCCChhhhhhhhccccccCcceecccCcHH-HHHHHHhc----------CCCh-----hHHHHHHHHHHHccccc
Q 002651 383 HGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----ETVAMVEGYLRANKMFV 446 (896)
Q Consensus 383 ~G~Gv~sLSv~dRaTIaNMa~E~GAt~giFp~De~-T~~YL~~t----------gR~~-----~~~~lve~y~~~~~l~~ 446 (896)
+|+.+|.+++-++++..++|..|..+.+-.+++ ..+||+.. |..+ ..++..|+|+....|+
T Consensus 573 --eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ll- 649 (852)
T COG1049 573 --EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELL- 649 (852)
T ss_pred --ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcccc-
Confidence 779999999999999999999999888776555 57899763 4443 3467889999988887
Q ss_pred cCCCCCCCCcccEEEEEEcCCc-cccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCccc
Q 002651 447 DYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAE 525 (896)
Q Consensus 447 ~~~~~D~~a~Y~~vieiDLs~v-eP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~ 525 (896)
.+|.+|+|..+|||||+.| ||++|.|.+|||+..++++..+
T Consensus 650 ---e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~----------------------------------- 691 (852)
T COG1049 650 ---EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD----------------------------------- 691 (852)
T ss_pred ---CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC-----------------------------------
Confidence 5899999999999999999 8999999999999999997631
Q ss_pred ccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCc--cCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEecc
Q 002651 526 LKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQ--VKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (896)
Q Consensus 526 l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlk--V~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~ 603 (896)
.|+-+|||||... .-+++++|.+| +|.+ ++ .|++|+|.++...++|.++|+..+|-++|+++.-|
T Consensus 692 ----~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~P 758 (852)
T COG1049 692 ----KIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELP--TRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMP 758 (852)
T ss_pred ----ccceeeeehhhcc-chhHHHHHHHH------HhcccCCC--cceEecCCccccHHHHhhcchHHHHhhccceecCC
Confidence 1557899999753 67899999988 4443 45 78999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCccccCCCCCCcccCCCC
Q 002651 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 683 (896)
Q Consensus 604 GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I~~d~~~eplg~~~~G 683 (896)
||..|+||.... ++|.. .++|+.|||++|+|... .+||+|.+|+|.+||-|+|
T Consensus 759 GCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki--------------- 811 (852)
T COG1049 759 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI--------------- 811 (852)
T ss_pred CcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC---------------
Confidence 999999997553 56665 47899999999999974 6899999999999999998
Q ss_pred CeeeeccCCCChhhHHHHhh
Q 002651 684 KSVYFKDIWPTTEEIAEVVQ 703 (896)
Q Consensus 684 ~~v~l~diwP~~~Ei~~~~~ 703 (896)
|+.||..+++.
T Consensus 812 ---------Pt~eEY~~~v~ 822 (852)
T COG1049 812 ---------PTVEEYMAYVA 822 (852)
T ss_pred ---------CCHHHHHHHHH
Confidence 89999988876
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.93 E-value=7.8e-26 Score=248.01 Aligned_cols=201 Identities=24% Similarity=0.313 Sum_probs=159.5
Q ss_pred HHccccccCCCCCCCCcccEEEEEEcCCccccccCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeec
Q 002651 440 RANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSF 519 (896)
Q Consensus 440 ~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~ 519 (896)
++..+|.+. .+|+.+.|+.+++|..-.+.|.+.+-.+||+..|+..-..+.... .++ | -....+..+.|
T Consensus 16 ~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~v-td~-------i--~a~~~ersL~y 84 (502)
T KOG0454|consen 16 SAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTV-TDK-------I--LARASERSLVY 84 (502)
T ss_pred hhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCccc-chH-------H--HHhhhhhceee
Confidence 444566553 589999999999999999999999999999999987633321110 000 0 00111234566
Q ss_pred CCCccc--ccCCcEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCcee-EEEecCcHHHHHHHHHcCchHHHHhc
Q 002651 520 HGQPAE--LKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK-TSLAPGSGVVTKYLLQSGLQKYLNEQ 596 (896)
Q Consensus 520 ~g~~~~--l~~g~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vk-t~vaPGS~~V~~~l~~~Gll~~L~~a 596 (896)
+|.... +.--.++-+|||||||.+.+|++.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|.++
T Consensus 85 mGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ea 158 (502)
T KOG0454|consen 85 MGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEA 158 (502)
T ss_pred ccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHHhh
Confidence 665432 22334678999999999999999999999 9999987777 68999999999999999999999999
Q ss_pred CcEEeccCcccccCCCCCCChhhhccccCCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCcc
Q 002651 597 GFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 668 (896)
Q Consensus 597 Gf~i~~~GCg~CiGnsg~l~~~~~~~i~~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~I 668 (896)
||.+...||..|.|+........|.| -+|+|||||||+|.+.+. +|+||.+.+|.++.|+.
T Consensus 159 gF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~ 219 (502)
T KOG0454|consen 159 GFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHD 219 (502)
T ss_pred ceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhccccccc
Confidence 99999999999999875544555554 489999999999998765 99999999999999975
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=99.91 E-value=2.5e-25 Score=217.82 Aligned_cols=97 Identities=33% Similarity=0.389 Sum_probs=78.5
Q ss_pred EecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCCc
Q 002651 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (896)
Q Consensus 772 ~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~ 851 (896)
|+.++||||||||||+ ||++||+.|+ ...-+| +++.|.+. ++. +..+|.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~R~~l~~--------------is~~~~--~~a~n~~~-~~~-~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKYRGHLDN--------------ISNNLL--IGAINAEN-GKA-NSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------ccccccCHHH--------------HHHHHh--hhhhhhhc-ccc-ccccccCCCc
Confidence 5789999999999997 7999554433 222122 23455554 333 4588999999
Q ss_pred eecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 852 ~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
.++++++|++||++|+|+|||||+|||+||||||||++|++|+-
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv 97 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGG 97 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999863
No 38
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.90 E-value=4.2e-25 Score=242.27 Aligned_cols=420 Identities=14% Similarity=0.069 Sum_probs=295.8
Q ss_pred cHHHHHHHHhcccCCC---CcceEeeecceeeeecCccHHHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCCCC
Q 002651 158 KKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDV 234 (896)
Q Consensus 158 ~~~~vekil~~~~~~~---~~~eI~~~pdrVl~qD~TG~pa~vdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~~d~ 234 (896)
.++..++|+++..+.. .+-++...+|-.+.||..+.-+..-+ .++++....+++|.+ +...+||.+-+..
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpg 138 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPG 138 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecC
Confidence 4667788888765432 24456777888888888776654322 223444456777764 6778999866553
Q ss_pred ccchHHHHHhhHHHHHHhhhhhhhhhhccccccccceeCCCCceeccccccccceeeecCCCcccC-CeEEecCCCCccc
Q 002651 235 TRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 313 (896)
Q Consensus 235 ~~~~~A~~~n~~~ef~rN~ery~fLkw~~~~f~~i~v~pPG~GI~HQV~lE~lA~vv~~~~G~~~P-dtvVGTDSHTtm~ 313 (896)
.+ .-....+.++..|-...=.| .|-. +-.+|..-+--.|.||. |+-| .+.-.| ....|+||||++.
T Consensus 139 sg--lvkk~aeaegld~if~eagF-~wre-agcs~clgmnpd~l~~y---erca------stsnRnfEgrqGa~srThlm 205 (502)
T KOG0454|consen 139 SG--LVKKVAEAEGLDRIFNEAGF-YWRE-AGCSFCLGMNPDGLCHY---ERCA------STSNRNFEGRQGADSRTHLM 205 (502)
T ss_pred ch--hhHhHHHHHhhHHHHHhhce-ehhh-ccccccccCCchhccHH---HHhh------hccCCCccccccccccchhh
Confidence 22 11122223333332211112 3422 22344444433799996 3222 455566 5689999999999
Q ss_pred CcccceecccChHHHHHHHcCCeEEeecCcEEEEEEEeecCCCCChhhHHHHHHHHHHhcCccceEEEEecCccCCCChh
Q 002651 314 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLA 393 (896)
Q Consensus 314 GgLGvlg~GVGg~Eaeaamlg~p~~~~vPevVgV~LtG~L~~GVtAkDliL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~ 393 (896)
++.+.++-|+|+.++..........+++|.++.++|.|..+.-..++|+++.++...-..+-..+..||-+--. +|+++
T Consensus 206 a~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~ 284 (502)
T KOG0454|consen 206 AASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGME 284 (502)
T ss_pred hhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCc
Confidence 99999999999999999998888999999999999999999999999999998887777888899999976655 89999
Q ss_pred hhhhhhccccccCcceecccCcHHHHHHHHhcCCChhHHHHHHHHHHHccccccCCCCCC-CCcccEEEEEEcCCccccc
Q 002651 394 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQ-ERVYSSYLELNLADVEPCI 472 (896)
Q Consensus 394 dRaTIaNMa~E~GAt~giFp~De~T~~YL~~tgR~~~~~~lve~y~~~~~l~~~~~~~D~-~a~Y~~vieiDLs~veP~V 472 (896)
.|+|+|||..|-+-|-+|+|.|--|+-|-....++.. . -|+ .|. ++.|...+.+|.+..+|..
T Consensus 285 ~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f----~--------~~~----~dg~~k~~~~dFv~~vE~~~~~s 348 (502)
T KOG0454|consen 285 TFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF----Y--------EVA----LDGLPKSFVTDFVLPVEPLRKYS 348 (502)
T ss_pred ceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh----h--------hhe----ecCCchhhccceeccccccceeE
Confidence 9999999999999999999998766665444333321 1 111 122 3678888999999999999
Q ss_pred cCCCCCCCcccccccccchhhhhcccccCCCCCCCccccccceeeecCCCcccccCCcEEEEEeccCCCCCChHHHHHHH
Q 002651 473 SGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAG 552 (896)
Q Consensus 473 AgP~~P~~~v~v~e~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IGSCTN~s~~dlm~aA~ 552 (896)
+.|+. ||.--=++- .|.+|...++|+|+-..-++.|
T Consensus 349 iii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~---- 384 (502)
T KOG0454|consen 349 IIIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYAR---- 384 (502)
T ss_pred EEecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHH----
Confidence 98887 543111110 1445667889999999887755
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHH-----HHHHc---CchHHHHhcCcEEeccCcccccCCCCCCChhhhcccc
Q 002651 553 LVAKKACELGLQVKPWVKTSLAPGSGVVTK-----YLLQS---GLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTIT 624 (896)
Q Consensus 553 lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~-----~l~~~---Gll~~L~~aGf~i~~~GCg~CiGnsg~l~~~~~~~i~ 624 (896)
+.+|+-++.|++++ +...+.|-.+-++. .+-.+ -++.++++.+..=+.|-|..|.++.-+ .+....+
T Consensus 385 IFfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~~ 459 (502)
T KOG0454|consen 385 IFFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYAR 459 (502)
T ss_pred HHHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhhc
Confidence 55677788999887 34455555543332 12221 256677778876778999999997521 1222222
Q ss_pred CCCeeEEEeeccCCCCCCCCCCCCCceeecCHHHHHHHHHhCc
Q 002651 625 DNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 667 (896)
Q Consensus 625 ~~~l~~~~VsSgNRNF~GR~gp~~~~~YLASP~lVaA~AlaG~ 667 (896)
+ + ..|+|+||||++|||.+..++|||||.+|+|+++.|+
T Consensus 460 k-e---~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 460 K-E---GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred c-c---cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2 2 2689999999999999999999999999999999998
No 39
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.79 E-value=1.1e-20 Score=182.83 Aligned_cols=99 Identities=35% Similarity=0.378 Sum_probs=92.6
Q ss_pred HHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCCceecHHHHHHHHHHcCCceEEEecC
Q 002651 796 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGA 875 (896)
Q Consensus 796 ~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~ 875 (896)
+||+.+|+...++|+|+.||+||++|.||+|+|..+.|.+..+..++.+.+.|+++.+++++.+.+|+.++.++||+||+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 58999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhcCCCccc
Q 002651 876 EYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 876 ~YG~GSSRdwAAkgp~lL~ 894 (896)
|||+||||||||+++++++
T Consensus 83 nfG~GSSRE~A~~al~~~G 101 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLG 101 (131)
T ss_dssp SBTBSS--THHHHHHHHTT
T ss_pred cccCCcchHHHHHHHHHhC
Confidence 9999999999999998875
No 40
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.38 E-value=8.8e-14 Score=133.57 Aligned_cols=75 Identities=44% Similarity=0.616 Sum_probs=55.1
Q ss_pred EecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCCc
Q 002651 772 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 851 (896)
Q Consensus 772 ~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g~ 851 (896)
|+||+|+||||.|++. +||.+ |++-+.|-+..|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999993 46766 3444555555555421 1
Q ss_pred eecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 852 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 852 ~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
+.+.++|..+ ..|||||+|||+||||||||.+.+.++
T Consensus 39 -----~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~G 75 (121)
T cd01579 39 -----TFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLG 75 (121)
T ss_pred -----hHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHC
Confidence 3455555544 579999999999999999999887765
No 41
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.32 E-value=4.1e-13 Score=122.36 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=25.9
Q ss_pred ceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 868 GTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 868 ~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
+.|||||+|||+||||||||+++++++-
T Consensus 16 ~~iiVaG~nfG~GSSRE~A~~al~~~Gi 43 (88)
T cd00404 16 PGVVIGDENYGTGSSREHAALELRLLGG 43 (88)
T ss_pred CEEEEecCCeecCCCHHHHHHHHHHhCC
Confidence 6799999999999999999999998864
No 42
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=99.16 E-value=6.2e-12 Score=125.63 Aligned_cols=71 Identities=32% Similarity=0.512 Sum_probs=53.7
Q ss_pred EEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCC
Q 002651 771 LNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTG 850 (896)
Q Consensus 771 ~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g 850 (896)
.|+||+|.||||.|+ +||.. .|-+.|-+..|.+.+ |
T Consensus 4 ~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~-----------------p-- 39 (156)
T TIGR02084 4 HKYGDNVDTDVIIPA----------RYLNT---------------SDPKELAKHCMEDLD-----------------K-- 39 (156)
T ss_pred EEcCCCccHhhccHH----------HHcCc---------------CCHHHHHhhhhccCC-----------------h--
Confidence 679999999999986 47753 244556666666654 1
Q ss_pred ceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 851 EKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 851 ~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
+.+.+|+.. .|||||+|||+||||||||.+++.++
T Consensus 40 ------~f~~~~~~g---~iiVaG~NFG~GSSRE~A~~al~~~G 74 (156)
T TIGR02084 40 ------DFVKKVKEG---DIIVAGENFGCGSSREHAPIAIKASG 74 (156)
T ss_pred ------hHHhhcCCC---CEEEccCcccCCCcHHHHHHHHHHhC
Confidence 445566433 49999999999999999999988875
No 43
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=99.12 E-value=1.1e-11 Score=124.75 Aligned_cols=72 Identities=36% Similarity=0.561 Sum_probs=53.5
Q ss_pred EEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCC
Q 002651 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (896)
Q Consensus 770 L~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~ 849 (896)
+.|+||+|.||||.|+ +||.. .|.+.|-+..|.+.+ |
T Consensus 4 v~~~gdnIdTD~I~P~----------~~l~~---------------~~~~~l~~~~f~~~~------p------------ 40 (163)
T PRK00439 4 VWKFGDNIDTDVIIPA----------RYLNT---------------SDPQELAKHCMEDLD------P------------ 40 (163)
T ss_pred EEEeCCCCchhhCChH----------HHhCC---------------CCHHHHHHHHhccCC------c------------
Confidence 3679999999999995 47755 234455566666654 1
Q ss_pred CceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 850 g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
+.+.+.+ .| -|||||+|||+||||||||.++++|+
T Consensus 41 -------~f~~~~~-~g--~IiVaG~NfG~GSSRE~A~~al~~~G 75 (163)
T PRK00439 41 -------EFAKKVK-PG--DIIVAGKNFGCGSSREHAPIALKAAG 75 (163)
T ss_pred -------chHhhcC-Cc--eEEEeCCcccCCccHHHHHHHHHHHC
Confidence 3344444 23 49999999999999999999998876
No 44
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=99.12 E-value=1.3e-11 Score=124.49 Aligned_cols=72 Identities=32% Similarity=0.492 Sum_probs=53.4
Q ss_pred EEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCC
Q 002651 771 LNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTG 850 (896)
Q Consensus 771 ~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g 850 (896)
.|+||+|.||||-|+ +||... .|.+-|-+..|...+
T Consensus 5 ~~~gdnIdTD~IiPa----------~~l~~~--------------~~~~~l~~~~f~~~~-------------------- 40 (166)
T PRK14023 5 WKFGDNINTDDILPG----------KYAPFM--------------VGEDRFHNYAFAHLR-------------------- 40 (166)
T ss_pred EEcCCCcchhhcchH----------HHhccC--------------CCHHHHHhhhccCCC--------------------
Confidence 679999999999986 588662 233445555555433
Q ss_pred ceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 851 EKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 851 ~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
.+.+.+|+.. -|||||+|||+||||||||.+++.++
T Consensus 41 -----p~f~~~~~~g---~IIVaG~NFG~GSSREhA~~al~~~G 76 (166)
T PRK14023 41 -----PEFASTVRPG---DILVAGRNFGLGSSREYAPEALKMLG 76 (166)
T ss_pred -----hhhHhhcCCC---CEEEccCcccCCccHHHHHHHHHHHC
Confidence 1445667643 49999999999999999999988775
No 45
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=99.06 E-value=2.7e-11 Score=120.85 Aligned_cols=72 Identities=35% Similarity=0.516 Sum_probs=53.5
Q ss_pred EEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCCC
Q 002651 771 LNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTG 850 (896)
Q Consensus 771 ~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~g 850 (896)
.|+||+|.||||.|+ +||.. .+.|-|-+..|.+.+
T Consensus 4 ~~~gdnIdTD~IiP~----------~~l~~---------------~~~~~l~~~~f~~~~-------------------- 38 (154)
T TIGR02087 4 WKFGDDIDTDEIIPG----------RYLRT---------------TDPDELASHAMEGID-------------------- 38 (154)
T ss_pred EEcCCCcchhhCcHH----------HHhCc---------------CCHHHHHhhccCcCC--------------------
Confidence 679999999999986 58854 134455566666653
Q ss_pred ceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 851 EKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 851 ~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
.+.+.+.+. | -|||||+|||+||||||||.+++.++-
T Consensus 39 -----p~f~~~~~~-g--~iiVaG~NFG~GSSRE~A~~al~~~Gi 75 (154)
T TIGR02087 39 -----PEFAKKVRP-G--DVIVAGKNFGCGSSREQAALALKAAGI 75 (154)
T ss_pred -----chhhhcCCC-C--cEEEcCCcccCCccHHHHHHHHHHhCC
Confidence 134445444 3 499999999999999999999887763
No 46
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=98.97 E-value=1.7e-10 Score=122.24 Aligned_cols=85 Identities=31% Similarity=0.392 Sum_probs=54.3
Q ss_pred CcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCc---chhcccccccChhhhhhhcCCCCCC
Q 002651 766 DAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGN---DEVMARGTFANIRLVNKLLNGEVGP 842 (896)
Q Consensus 766 ~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN---~evm~RGtfaNi~~~N~l~~~~~g~ 842 (896)
..|| .|+||+|.||||-|+. ||... +.| .+-+-+..|..++ .. .
T Consensus 70 ~Grv-~k~gDNIdTD~IiPa~----------~l~~~-------------~sn~~~~~~l~~~~F~~l~-~~--------~ 116 (246)
T PLN00072 70 HGLC-FVVGDNIDTDQIIPAE----------YLTLV-------------PSKPDEYEKLGSYALIGLP-AF--------Y 116 (246)
T ss_pred EEeE-EEeCCCcchhhcccHH----------Hhccc-------------cccCCCHHHHHHhhhccCC-cc--------h
Confidence 4688 5899999999999987 77652 222 3444444454442 00 0
Q ss_pred ceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 843 ~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
+.+....|+.. . + -.|||||+|||+|||||||+.+++.++-
T Consensus 117 ~~r~v~~Gd~~----------~-~-~~IIVaG~NFGcGSSREhA~~AL~~~GI 157 (246)
T PLN00072 117 KTRFVEPGEMK----------T-K-YSIIIGGENFGCGSSREHAPVALGAAGA 157 (246)
T ss_pred hhcccCCCCCC----------C-C-ceEEEecCcccCCCcHHHHHHHHHHcCC
Confidence 11111122211 1 1 2699999999999999999999887763
No 47
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=98.89 E-value=3.9e-10 Score=103.66 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=25.4
Q ss_pred ceEEEecCCCCCChhhhhhhcCCCcccc
Q 002651 868 GTIILAGAEYGSGSSRDWAAKGPMLELK 895 (896)
Q Consensus 868 ~~vivaG~~YG~GSSRdwAAkgp~lL~~ 895 (896)
+.|||+|+|||+|||||||++++++++-
T Consensus 18 ~~ilVaG~nfG~GSSRE~A~~al~~~Gi 45 (91)
T cd01577 18 GDIIVAGKNFGCGSSREHAPWALKDAGI 45 (91)
T ss_pred CCEEEecCcccCCCcHHHHHHHHHHhCC
Confidence 5699999999999999999999988764
No 48
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=98.83 E-value=3.4e-09 Score=127.53 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=56.1
Q ss_pred CCccCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCC
Q 002651 762 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 841 (896)
Q Consensus 762 ~~i~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g 841 (896)
++-...+| .|+||+|+|||||||+ |+.. | .||.+.-+.+.....
T Consensus 163 ~~~i~g~V-~KvgdnInTD~I~Pa~----------~~~~--------------R-----------sdipl~a~~~~e~~~ 206 (835)
T PRK09238 163 PEKITVTV-FKVTGETNTDDLSPAP----------DAWS--------------R-----------PDIPLHALAMLKNRR 206 (835)
T ss_pred ccccEEEE-EEeCCCCchhccCCcc----------cccc--------------C-----------CCHHHHHHHhccCCC
Confidence 34445788 8999999999999999 5544 2 356665555542211
Q ss_pred CceeecCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcC
Q 002651 842 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKG 889 (896)
Q Consensus 842 ~~t~~~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkg 889 (896)
| ...+.++++++.|. -|+|+|+|||+|||||||+..
T Consensus 207 ------p-----~f~~~i~~~~~~G~-~IivaG~nfG~GSSREhA~~a 242 (835)
T PRK09238 207 ------P-----GPIKQIEELKKKGH-PVAYVGDVVGTGSSRKSATNS 242 (835)
T ss_pred ------C-----cHHHHHHhhccCCC-EEEEECCCEeCCcCHHHHHHH
Confidence 1 14455555555774 488889999999999999975
No 49
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=98.70 E-value=2.5e-09 Score=110.98 Aligned_cols=86 Identities=26% Similarity=0.384 Sum_probs=55.2
Q ss_pred cEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceee
Q 002651 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (896)
Q Consensus 767 a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~ 846 (896)
.+++...||+|.||+|-|+- ||+.- ..+-+-+..|.+.|.... |...+ .
T Consensus 9 G~~~~l~~dnIDTD~IiPa~----------fl~~~---------------~~~~l~~~~f~~~r~~~~---~~~~p---~ 57 (200)
T PRK01641 9 GLAVPLDRANVDTDQIIPKQ----------FLKRI---------------TRTGFGKGLFDDWRYLDD---GQPNP---D 57 (200)
T ss_pred EEEEEcCCCCCChhhcchHh----------HcCcC---------------CHHHHHHhhhcccccccc---CCCCC---C
Confidence 57777679999999999965 77541 123355666777662111 11111 0
Q ss_pred cCCCceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 847 ~p~g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
++ --+.+|+.. -|||||+|||+|||||||+.+.+.++
T Consensus 58 F~--------ln~~~~~~~---~IlVaG~NFGcGSSRE~A~~al~~~G 94 (200)
T PRK01641 58 FV--------LNQPRYQGA---SILLAGDNFGCGSSREHAPWALADYG 94 (200)
T ss_pred cc--------ccccccCCC---eEEEcCCcccCCCcHHHHHHHHHHcC
Confidence 10 013455443 39999999999999999999877654
No 50
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=98.56 E-value=1.5e-08 Score=98.08 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 857 DAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 857 daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
+.+.+.+. | -|||+|+|||+|||||||+.+.+.++
T Consensus 38 ~f~~~v~~-g--dilVaG~nFG~GSSRE~A~~al~~~G 72 (129)
T cd01674 38 EFSTKTKQ-G--DILVSGFNFGTGSSREQAATALLAKG 72 (129)
T ss_pred hhhhcCCC-C--CEEEeCCccCCCCcHHHHHHHHHHcC
Confidence 34444443 3 39999999999999999998765543
No 51
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=98.44 E-value=6.2e-08 Score=99.21 Aligned_cols=71 Identities=30% Similarity=0.535 Sum_probs=47.1
Q ss_pred EEec-CCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCceeecCC
Q 002651 771 LNFG-DSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (896)
Q Consensus 771 ~~lG-D~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t~~~p~ 849 (896)
.+|| |+|-||+|-|+ |||+.. ++..|- ++.|...|..-
T Consensus 12 ~pl~~dnIDTD~IIP~----------~fLk~i--~~~gl~-------------k~~f~~~r~~~---------------- 50 (191)
T COG0066 12 WPLGRDNVDTDQIIPK----------RFLKTI--TRTGLG-------------KHLFEDWRYLD---------------- 50 (191)
T ss_pred EecCCCCCccccCccH----------HHhccc--CHhhhh-------------hcccccccccC----------------
Confidence 5677 99999999994 599762 222221 22344443100
Q ss_pred CceecHHHHHHHHHHcCCceEEEecCCCCCChhhhhhhc
Q 002651 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAK 888 (896)
Q Consensus 850 g~~~~i~daA~~y~~~g~~~vivaG~~YG~GSSRdwAAk 888 (896)
+|++.+.+...-..|+|||+|+|+|||||||+-
T Consensus 51 ------PdF~~n~~~yq~g~IlVag~NFGcGSSREHApw 83 (191)
T COG0066 51 ------PDFVLNVPPYQGGDILVAGENFGCGSSREHAPW 83 (191)
T ss_pred ------cchhhcCCccCCccEEEecCCCCCCccHHHHHH
Confidence 255555544433559999999999999999974
No 52
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=98.42 E-value=1.7e-07 Score=91.54 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEecCCCCCChhhhhhhcCC
Q 002651 870 IILAGAEYGSGSSRDWAAKGP 890 (896)
Q Consensus 870 vivaG~~YG~GSSRdwAAkgp 890 (896)
|+|+|+|+|+|||||||..+=
T Consensus 53 ilvaG~nFG~GSSRe~A~~aL 73 (131)
T cd01576 53 VAYVGDVVGTGSSRKSATNSV 73 (131)
T ss_pred EEEECCceeeccchHHHHHHH
Confidence 999999999999999998543
No 53
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=98.26 E-value=3e-07 Score=94.83 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=52.1
Q ss_pred cCcEEEEEecCCccccccCCCCCCCCCChHHHHHHHcCCCcccCcccccccCcchhcccccccChhhhhhhcCCCCCCce
Q 002651 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 844 (896)
Q Consensus 765 ~~a~vL~~lGD~iTTDHISPAG~i~~~s~a~~yL~~~Gv~~~dfnsygsRRgN~evm~RGtfaNi~~~N~l~~~~~g~~t 844 (896)
...|+...-||+|-||+|-|+ +||+.- ..+.+-++.|...|..+. .|. +
T Consensus 7 ~~G~~~~l~~dnIDTD~IiP~----------rfl~~~---------------~~~~l~~~~f~~~R~~~~-----~g~-~ 55 (188)
T TIGR00171 7 HTGLVAPLDAANVDTDAIIPK----------QFLKRI---------------TRTGFGKHLFFDWRFLDA-----NGK-E 55 (188)
T ss_pred EEEEEEECCCCcCcHhhhhHH----------HHhCcC---------------CHHHHHHhcccccccccc-----ccC-C
Confidence 445665555999999999994 588651 123344556666653210 110 0
Q ss_pred eecCCCceecHHHH---HHHHHHcCCceEEEecCCCCCChhhhhhhcCCC
Q 002651 845 VHVPTGEKLSVFDA---AMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPM 891 (896)
Q Consensus 845 ~~~p~g~~~~i~da---A~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~ 891 (896)
. -| +. ...|+... |+|||+|||+|||||||+.+-+
T Consensus 56 ~-~p--------~F~ln~~~~~~~~---IlVaG~NFGcGSSREhA~~aL~ 93 (188)
T TIGR00171 56 P-NP--------DFVLNQPQYQGAS---ILLARENFGCGSSREHAPWALD 93 (188)
T ss_pred C-Cc--------chhhcccccCCCc---EEEcCCcccCCCcHHHHHHHHH
Confidence 0 01 22 33455433 9999999999999999987543
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=97.91 E-value=5.5e-06 Score=100.30 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=23.1
Q ss_pred HHHHcCCceEEEecCCCCCChhhhhhhcCC
Q 002651 861 KYKSAGHGTIILAGAEYGSGSSRDWAAKGP 890 (896)
Q Consensus 861 ~y~~~g~~~vivaG~~YG~GSSRdwAAkgp 890 (896)
+-++.|.| |+++|+|+|+||||+||...-
T Consensus 216 ~~~~~Gd~-iivaG~nfG~GSSRe~A~~al 244 (844)
T TIGR00117 216 ALKQKGFP-VAYVGDVVGTGSSRKSATNSV 244 (844)
T ss_pred HhccCCCe-EEEeCCceecCcchHHHHHHH
Confidence 44566656 778899999999999997644
No 55
>PLN00094 aconitate hydratase 2; Provisional
Probab=96.08 E-value=0.0069 Score=74.50 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCceEEEecCCCCCChhhhhhhcCC
Q 002651 857 DAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP 890 (896)
Q Consensus 857 daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp 890 (896)
+.-...|+.|.|+ +++|+|+|+||||+||...-
T Consensus 283 ~~i~~lk~~g~~i-ivvG~nfG~GSSResA~nsl 315 (938)
T PLN00094 283 AQIEELKKKGHPL-AYVGDVVGTGSSRKSATNSV 315 (938)
T ss_pred HHHHHHHHcCCce-EEECCceecCCchHHHHHHH
Confidence 4456789999885 56699999999999997643
No 56
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.56 E-value=0.035 Score=63.96 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=59.2
Q ss_pred cEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCc
Q 002651 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (896)
Q Consensus 530 ~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GC 605 (896)
+|+.++|| |=--|.+.++..|.+| +|+|+++.++++|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 45677775 8888899999999999 89999999888776 578899999999999999999999997655
No 57
>COG1679 Predicted aconitase [General function prediction only]
Probab=92.79 E-value=0.27 Score=56.00 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=57.1
Q ss_pred cEEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCc
Q 002651 530 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 605 (896)
Q Consensus 530 ~V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GC 605 (896)
.++.++|| |---|.+.++..|.+| +|++-++.+.++|+ -|+.|+.++.+.|+++.|+++|..++.-.|
T Consensus 289 epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 289 EPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 45566776 7777899999999999 88887887777665 689999999999999999999999997553
No 58
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=89.84 E-value=0.12 Score=54.00 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCceEEEecCCCCCChhhhhhhcC
Q 002651 857 DAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKG 889 (896)
Q Consensus 857 daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkg 889 (896)
+.-+..|+.|.|++.+ |+--|+||||--|.-.
T Consensus 44 ~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NS 75 (204)
T PF06434_consen 44 EQIEELKEKGHPLAYV-GDVVGTGSSRKSATNS 75 (204)
T ss_dssp HHHHHHHTTSS-EEEE-EEEEEES---THHHHH
T ss_pred HHHHHHHHcCCcEEEe-cCccccCcccchhhhh
Confidence 4556889999998877 8899999999877543
No 59
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=87.92 E-value=1.1 Score=51.72 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=56.1
Q ss_pred EEEEEeccCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCchHHHHhcCcEEeccCcccccC
Q 002651 531 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG 610 (896)
Q Consensus 531 V~ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~p~Vkt~vaPGS~~V~~~l~~~Gll~~L~~aGf~i~~~GCg~CiG 610 (896)
+++++| .|=--|.+.++.-|++| +|+++++.++++|. -|+.|+ +.+.|+.+.|+++|+.|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 456677 58888899999999999 89877766666655 466676 89999999999999999997777 663
No 60
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.69 E-value=41 Score=33.40 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=27.6
Q ss_pred EEEeccCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002651 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (896)
Q Consensus 533 ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~ 566 (896)
|++||+|..|=---.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 7899999999665555 77888899999999888
No 61
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=32.06 E-value=28 Score=32.12 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=26.2
Q ss_pred EeccCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002651 535 AITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (896)
Q Consensus 535 ~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~ 566 (896)
+|++|..+.-.. .+||+.|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht-~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHT-FMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 689999998766 4588899999999999887
No 62
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=29.95 E-value=76 Score=39.09 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCceEEEecCCCCCChhhhhhhcCCCccc
Q 002651 857 DAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLEL 894 (896)
Q Consensus 857 daA~~y~~~g~~~vivaG~~YG~GSSRdwAAkgp~lL~ 894 (896)
+.-+..|+.|+|++-++ .--|+||||--|--.-.|-.
T Consensus 212 ~~i~~lk~Kg~~vayvg-dvvGtGSSRkSa~NsvlW~~ 248 (852)
T COG1049 212 KQIEALKQKGHPVAYVG-DVVGTGSSRKSATNSVLWHM 248 (852)
T ss_pred HHHHHHhhcCceEEEec-cccccCcccccccceeeeec
Confidence 45567899999877765 46899999988766554443
No 63
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=28.13 E-value=38 Score=33.75 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=22.3
Q ss_pred CCCChhhhccc---cCCCeeEEEeeccCCCC
Q 002651 613 GDLDESVASTI---TDNDIVAAAVLSGNRNF 640 (896)
Q Consensus 613 g~l~~~~~~~i---~~~~l~~~~VsSgNRNF 640 (896)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 56777777766 45577888899999999
No 64
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=26.78 E-value=34 Score=33.79 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=25.6
Q ss_pred cEEeccCcccccCCCCCCChhhhcccc---CCCeeEEEeeccCCCC
Q 002651 598 FHIVGYGCTTCIGNSGDLDESVASTIT---DNDIVAAAVLSGNRNF 640 (896)
Q Consensus 598 f~i~~~GCg~CiGnsg~l~~~~~~~i~---~~~l~~~~VsSgNRNF 640 (896)
|.++.|.=+..-+ .+.+++++.+-++ ....+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4445444443333 3447888888777 5566777789999999
No 65
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=22.37 E-value=68 Score=31.26 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.9
Q ss_pred EEEeccCCCCCChHHHHHHHHHHHHHHhcCCccC
Q 002651 533 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 566 (896)
Q Consensus 533 ia~IGSCTN~s~~dlm~aA~lLak~A~~kGlkV~ 566 (896)
+.+|++|..|.-.. .+||+.|.+.|.+.|.+++
T Consensus 5 ivaVtacp~GiAht-~lAAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 5 LVAVTACVSGVAHT-YMAAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEeeCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 67899999998666 4588899999999999887
Done!