Query 002651
Match_columns 896
No_of_seqs 286 out of 2143
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 15:46:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002651.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1370-1374//hhsearch_pdb/002651hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 1963.6 51.1 787 103-893 2-789 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1353.0 47.1 605 158-893 34-653 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 852.8 39.4 432 157-716 380-844 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 192.6 -11.4 66 533-611 437-504 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 150.1 1.1 105 747-893 4-111 (213)
6 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 119.8 -2.2 71 770-893 7-77 (163)
7 2pkp_A Homoaconitase small sub 1.0 1 1 119.3 -0.6 73 767-893 5-77 (170)
8 3vba_A Isopropylmalate/citrama 1.0 1 1 102.3 0.8 75 765-893 5-79 (176)
9 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 97.5 0.8 83 763-893 8-90 (171)
10 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 84.3 -1.8 86 764-892 9-97 (203)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=1963.63 Aligned_cols=787 Identities=61% Similarity=1.058 Sum_probs=750.4
Q ss_pred CCHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 95144203433899874003650689999898889815533011110014875540999999981005899841696302
Q 002651 103 HPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDVEKIIDWENSAPKQVEIPFKP 182 (896)
Q Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~lP~sirillE~~lR~~~~~~v~~~~vekil~~~~~~~~~~eI~~~p 182 (896)
+||++.+++|...+ +.|+||+|++++...+++|||||||||||+|||||++.+++++|+++++|..+...+.+|.|+|
T Consensus 2 ~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~p 79 (888)
T 2b3y_A 2 NPFAHLAEPLDPVQ--PGKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFKP 79 (888)
T ss_dssp CTTGGGEEESCTTS--TTCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEECC
T ss_pred CCHHHHHCCCCCCC--CEEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 82045433267889--6269998477263323108832999998887505786336999999965434689897788964
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 53453058627799999999999999099987437898879994699887976526799972499999954322244210
Q 002651 183 ARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWG 262 (896)
Q Consensus 183 drVllqD~TG~paivdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~vd~~~~~~A~~~n~~~ef~RN~Ery~fLkw~ 262 (896)
|||+|||+||+|+++||++||++++++|.||.++||.+||++++||+||++.++..+|..+|+.+||+||.|||.||||+
T Consensus 80 drvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~ 159 (888)
T 2b3y_A 80 ARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWG 159 (888)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 47887746357899999998999986199843337788706995799876776654779999999999852157778988
Q ss_pred CCCCCCCCEECCCCCEECCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCCCEEEEECC
Q ss_conf 22246640208999412120122111055317995457817723898765574420103567688999981881895468
Q 002651 263 SSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 342 (896)
Q Consensus 263 ~~~f~ni~vvpPG~GI~HQV~lE~lA~vv~~~~G~~~PdtvVGTDSHTtm~GglGvlg~GVGg~Eaeaamlg~p~~l~vP 342 (896)
+++|+||+|+|||+|||||||+||||+|||.++|+++|||||||||||||+||||+|||||||+|++++|+|||+||++|
T Consensus 160 ~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~P 239 (888)
T 2b3y_A 160 SQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239 (888)
T ss_dssp HHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECC
T ss_pred HHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECCC
T ss_conf 97644878889998880654253415542125761136728856887655674405897468899999995590760489
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCHHHHHHH
Q ss_conf 28999997016999993309999999999658323599994696678995556656114532385030002767899999
Q 002651 343 GVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 422 (896)
Q Consensus 343 evVgV~L~G~L~~GVtakDivL~i~~~Lr~~Gvvgk~VEF~G~Gv~sLSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL 422 (896)
+||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|+||+|++|++||
T Consensus 240 evvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL 319 (888)
T 2b3y_A 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYL 319 (888)
T ss_dssp CEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHH
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHHH
T ss_conf 78899997048989465689999999966388555599994673254661210105302265497057856838899999
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 760899157999999999700012379999-9984237999985884200138999997423665520035431054467
Q 002651 423 KLTGRSDETVAMVEGYLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGF 501 (896)
Q Consensus 423 ~~tgR~~~~i~lve~y~k~~~l~~~~~~~D-~~a~Y~~vieiDLs~ieP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~ 501 (896)
+.|||++++++++|+|++++++|++.. +| ++|+|+++++||||+|||+||||++|||+++|++++.+|.+++..+++.
T Consensus 320 ~~~gr~~~~~~~~e~y~~a~~l~~~l~-~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~ 398 (888)
T 2b3y_A 320 VQTGRDEEKLKYIKKYLQAVGMFRDFN-DPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398 (888)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTCCCCTT-CGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 864984677877899999899875348-8878984679999871005574128899330008677223477765211223
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
Q ss_conf 78788821112201330289754346876899972158899985799999999999985698448863189843839999
Q 002651 502 KGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVT 581 (896)
Q Consensus 502 ~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dlm~AA~lLAk~A~~kGlkV~p~VktsvaPGS~~V~ 581 (896)
+|+....+.+...++++++|+++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 399 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~ 478 (888)
T 2b3y_A 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVT 478 (888)
T ss_dssp TBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHH
T ss_pred CCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHH
T ss_conf 44453200102451241189502236886889998068789857799999999999986699779985399968989999
Q ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHH
Q ss_conf 99998592699985594992367533437999997100012457970687862157777899799888516249899999
Q 002651 582 KYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 661 (896)
Q Consensus 582 ~~l~~~Gll~~L~~aGf~I~~~GCg~CiGnsg~l~~~~e~~i~~~~l~~~aV~SgNRNF~GRigp~~~~~YLASP~lVvA 661 (896)
+||+++||+++|+++||.|++|||++||||+++++++++++|.+||+++++|+|+||||+||||+..+++|||||++|||
T Consensus 479 ~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA 558 (888)
T 2b3y_A 479 YYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIA 558 (888)
T ss_dssp HHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHH
T ss_pred HHHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHHH
T ss_conf 99998396999997698996788741037878877303433204871489995267786767898765557558999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97707455588889865589998255025999906689874306784210112233458996655556788875324999
Q 002651 662 YALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPN 741 (896)
Q Consensus 662 ~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~i~~~~~~w~~l~~~~~~~~~Wd~~ 741 (896)
|||+|+|+||+++||+|.+++|++|||+||||+.+|+++++...++++||.+.|..++.+++.|+.++++++++|+|+++
T Consensus 559 ~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~ 638 (888)
T 2b3y_A 559 YAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638 (888)
T ss_dssp HHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTT
T ss_pred HHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98607311365458655588998300235688635568998722898774444301357750013577888875466887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 85101899987788999998886695799883697533554789998999967778887199865576533566751010
Q 002651 742 STYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVM 821 (896)
Q Consensus 742 Styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lgD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM 821 (896)
||||++||||++|+.++++++++.++|+|+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||
T Consensus 639 St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm 718 (888)
T 2b3y_A 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVM 718 (888)
T ss_dssp CSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHHH
T ss_conf 65245899866555678886663375799971687661546667665678878999986499857712412234677777
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCEEECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf 012245725664203897799226527992314999999999739966999468779971134330197751
Q 002651 822 ARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLE 893 (896)
Q Consensus 822 ~RGtfaNir~~N~l~~~~~g~~t~~~p~g~~~~i~daA~~y~~~g~p~vviaG~~YG~GSSRdwAAkgp~lL 893 (896)
+||||+|+|+.|+|++ ++||+|+|+|+|+.+++||+|++|+++|+++|||||+|||+||||||||+++++|
T Consensus 719 ~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~ 789 (888)
T 2b3y_A 719 ARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLL 789 (888)
T ss_dssp HHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHT
T ss_pred HHHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 5412233433232344-4587224369986266265689887549856998987778875378999999981
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1353.00 Aligned_cols=605 Identities=30% Similarity=0.469 Sum_probs=536.4
Q ss_pred CHHHHHHHHHCCCCCC------C-CCEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 0999999981005899------8-41696302534530586277999999999999990999874378988799946998
Q 002651 158 KKEDVEKIIDWENSAP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSV 230 (896)
Q Consensus 158 ~~~~vekil~~~~~~~------~-~~eI~~~pdrVllqD~TG~paivdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv 230 (896)
.+|+.|||++.+.... . +.+|.++|||+++||+||++++++|++ +|.++ +..|.++++||++
T Consensus 34 ~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-------~G~~~----v~~P~~~~~DH~v 102 (753)
T 1c96_A 34 PLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-------SGLPK----VAVPSTIHCDHLI 102 (753)
T ss_dssp CCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-------HTCSS----CSSCEEEECCSSC
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHH-------HCCCC----CCCCCCEECCCCC
T ss_conf 978999999997578544442699978999833898852530899999998-------09998----8898764348987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEECCCCCCCCCEEEECCCCCCCCC-EEEECCCC
Q ss_conf 87976526799972499999954322244210222466402089994121201221110553179954578-17723898
Q 002651 231 QVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 309 (896)
Q Consensus 231 ~vd~~~~~~A~~~n~~~ef~RN~Ery~fLkw~~~~f~ni~vvpPG~GI~HQV~lE~lA~vv~~~~G~~~Pd-tvVGTDSH 309 (896)
|++.+++. ++..++.+|.|+|.||+|++++| |++|+|||+||||||++|+ +++|+ ++||||||
T Consensus 103 ~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDSH 166 (753)
T 1c96_A 103 EAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDSH 166 (753)
T ss_dssp CBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESSTT
T ss_pred CCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCCC
T ss_conf 77777664-----35554365799999999999977-9779899988507370303----------13799678658887
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 76557442010356768899998188189546828999997016999993309999999999658323599994696678
Q 002651 310 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGMGE 389 (896)
Q Consensus 310 Ttm~GglGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtakDivL~i~~~Lr~~Gvvgk~VEF~G~Gv~s 389 (896)
|||+||||+|||||||+|++++|+||+|||++|++|+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++
T Consensus 167 T~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~ 246 (753)
T 1c96_A 167 TPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDS 246 (753)
T ss_dssp GGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGG
T ss_pred CCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 77656224314456789999998288654027868999996116989667899999988853288414899997773154
Q ss_pred CCHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 99555665611453238503000276789999976089915799999999970001237999999842379999858842
Q 002651 390 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADVE 469 (896)
Q Consensus 390 LSv~dRaTIaNMa~E~GAt~g~Fp~De~Tl~YL~~tgR~~~~i~lve~y~k~~~l~~~~~~~D~~a~Y~~vieiDLs~ie 469 (896)
||+++|||||||++|+|||+|+||+|++|++||+.++|++ .++++++|.+ +| .+|++|+|+++++||||+||
T Consensus 247 LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~le 318 (753)
T 1c96_A 247 ISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSELK 318 (753)
T ss_dssp SCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGCC
T ss_pred CCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHH---HC----CCCCCCCEEEEEEEECCCCC
T ss_conf 7710023354046653852030057489999998659837-8899999986---43----58999955699999822100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 00138999997423665520035431054467787888211122013302897543468768999721588999857999
Q 002651 470 PCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVML 549 (896)
Q Consensus 470 P~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dlm~ 549 (896)
|+||+|++|||+++|++++..+.+ ++++ -+|++|||||||||||+| |.
T Consensus 319 P~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~D-l~ 366 (753)
T 1c96_A 319 PHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYED-MG 366 (753)
T ss_dssp CEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHH-HH
T ss_pred EEECCCCCCCCEEEHHHHHHHHHH--------------------------CCCC-----CCEEEEEEECCCCCCHHH-HH
T ss_conf 242279997554186885456763--------------------------5886-----415799981578998799-99
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 99999999985698448863189843839999999985926999855949923675334379999971000124579706
Q 002651 550 GAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIV 629 (896)
Q Consensus 550 AA~lLAk~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~Gll~~L~~aGf~I~~~GCg~CiGnsg~l~~~~e~~i~~~~l~ 629 (896)
+|+.++|+|+++|++. .||++|+|||++|++||+++||+++|+++||.|++|||++||||+++.. ++. .+++
T Consensus 367 ~AA~ilkga~~~~v~~--~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~~~--~~~~-- 438 (753)
T 1c96_A 367 RSAAVAKQALAHGLKC--KSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--IKK--GEKN-- 438 (753)
T ss_dssp HHHHHHHHHHTTTCCC--SSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--SCT--TCCE--
T ss_pred HHHHHHCCHHHCCCCC--CCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--CCC--CCCC--
T ss_conf 9999960576569998--8508996998999999998584999997696995688506236888755--566--7762--
Q ss_pred EEEEECCCCCCCCCCC-CCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8786215777789979-988851624989999997707455588889865589998255025999906689874306784
Q 002651 630 AAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLP 708 (896)
Q Consensus 630 ~~aV~SgNRNF~GRig-p~~~~~YLASP~lVvA~AlaG~I~~d~~~eplg~~~~G~~v~l~diwP~~~Ei~~~~~~~v~~ 708 (896)
++|+|+||||+|||| ...+.+|||||++||||||+|+|+||+.+||| .+++|++|||+| |+.+|+++
T Consensus 439 -~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~-------- 506 (753)
T 1c96_A 439 -TIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR-------- 506 (753)
T ss_dssp -EEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS--------
T ss_pred -EEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH--------
T ss_conf -278605678444557899872365589999999973976468000535-577897033149--96200046--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 210112233458996655556788-8753249998510189998778899999888669579988369753355478999
Q 002651 709 DMFKSTYEAITKGNPTWNQLSVPA-SKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGS 787 (896)
Q Consensus 709 ~~f~~~y~~i~~~~~~w~~l~~~~-~~~~~Wd~~Styi~~pp~f~~~~~~~~~~~~i~~a~vL~~lgD~iTTDHISPAG~ 787 (896)
++|. .+++.|+.++.+. +..|.|+++||||+.||||++ |+..++.++++|+++||+||||||||||
T Consensus 507 ~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG- 573 (753)
T 1c96_A 507 AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAG- 573 (753)
T ss_dssp SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCG-
T ss_pred HHCC-------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCEEEEECCCCCCCCCCCCCC-
T ss_conf 5426-------78633326899887612752898755567998888-----8765533543787326875556605664-
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCC--CCCCC---CEEECCCCCEECHHHHHHHH
Q ss_conf 89999677788871998655765335667510100122457256642038--97799---22652799231499999999
Q 002651 788 IHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEVGP---KTVHVPTGEKLSVFDAAMKY 862 (896)
Q Consensus 788 I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM~RGtfaNir~~N~l~~--~~~g~---~t~~~p~g~~~~i~daA~~y 862 (896)
+||.+ ||||+||+ .|.|.. +.+++ +|+|+|+|+.+++||+|++|
T Consensus 574 --------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~y 622 (753)
T 1c96_A 574 --------PWLKF----------------------RGHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARYY 622 (753)
T ss_dssp --------GGGGG----------------------TBCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHHH
T ss_pred --------HHHCC----------------------CCCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf --------34301----------------------66554411-332206643457876614773587413657799999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf 9739966999468779971134330197751
Q 002651 863 KSAGHGTIILAGAEYGSGSSRDWAAKGPMLE 893 (896)
Q Consensus 863 ~~~g~p~vviaG~~YG~GSSRdwAAkgp~lL 893 (896)
+++|+++|||||+|||+||||||||+++++|
T Consensus 623 ~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~ 653 (753)
T 1c96_A 623 KQHGIRWVVIGDENYGEGASREHSALEPRHL 653 (753)
T ss_dssp HHHTCCEEEECCSSBTBSCCCTHHHHHHHHT
T ss_pred HHHCCCEEEEECCCCCCCCCHHHHHHHHHHC
T ss_conf 9737973999557678875267777657874
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=852.77 Aligned_cols=432 Identities=23% Similarity=0.331 Sum_probs=371.7
Q ss_pred CCHHHHHHHHHCCCCCC---CCCEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 40999999981005899---841696302534530586277999999999999990999874378988799946998879
Q 002651 157 VKKEDVEKIIDWENSAP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVD 233 (896)
Q Consensus 157 v~~~~vekil~~~~~~~---~~~eI~~~pdrVllqD~TG~paivdlaamrd~~~~~G~dp~~inP~~pv~lviDHsv~vd 233 (896)
..+|++|||++++.+.. .+..|.++||||++||+||+|+ |++++++|.+ +++++. +..++||.++.+
T Consensus 380 mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~-------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~ 449 (865)
T 1l5j_A 380 RGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT-------RDELKDLACL--GFSADL-VMQSFCHTAAYP 449 (865)
T ss_dssp SCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-------HHHHHHTTCC--SCCSSC-EEECCCSSSSSC
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHH-------HHHHHHCCCC--CCCCCE-EEEECCCCCCCC
T ss_conf 886699999999738886589988999844999863575899-------9999972897--578874-999778777678
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEECCCCCCCCCEEEECCCCCCCCCE-EEECCCCCCC
Q ss_conf 765267999724999999543222442102224664020899941212012211105531799545781-7723898765
Q 002651 234 VTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 312 (896)
Q Consensus 234 ~~~~~~A~~~n~~~ef~RN~Ery~fLkw~~~~f~ni~vvpPG~GI~HQV~lE~lA~vv~~~~G~~~Pdt-vVGTDSHTtm 312 (896)
. +...+++||.++|.+.+|+ .++|||+|||||++.| +++||+ +|||||||||
T Consensus 450 ~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~ 502 (865)
T 1l5j_A 450 K---------PVDVNTHHTLPDFIMNRGG-------VSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 502 (865)
T ss_dssp C---------HHHHHHHHHHHHHHHTTTC-------EECCTTSBCHHHHHGG-----------GCCTTCEEEESSTTCCC
T ss_pred C---------HHHHHHHHHHHHHHHHCCC-------EEECCCCCEEEEEECC-----------CCCCCCEEEECCCCCCC
T ss_conf 9---------7889999899999997397-------6747998521034135-----------02046369827988662
Q ss_pred CCCCCCEECCCCHHHHHHHHCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHC------------CCCCEEE
Q ss_conf 5744201035676889999818818954682899999701699999330999999999965------------8323599
Q 002651 313 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQMLRKH------------GVVGKFV 380 (896)
Q Consensus 313 ~GglGvlg~GVGg~Eaeaamlg~p~~l~vPevVgV~L~G~L~~GVtakDivL~i~~~Lr~~------------Gvvgk~V 380 (896)
+||+|+ |.|+.|++.+|++|++|+++|++|+|+|+|+|++|||+|||||+|++.++++ |++||+|
T Consensus 503 ~~Glg~---g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~v 579 (865)
T 1l5j_A 503 PIGISF---PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579 (865)
T ss_dssp SSSEEC---CCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEE
T ss_pred CCCCEE---CCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 235320---76279999999709665047977899997027989872889999999987525334233476233004899
Q ss_pred EEECCCCCCCCHHHHHHHHCCCCCCCCCEECCCCC-HHHHHHHHH----------CCCC-----HHHHHHHHHHHHHCCC
Q ss_conf 99469667899555665611453238503000276-789999976----------0899-----1579999999997000
Q 002651 381 EFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL----------TGRS-----DETVAMVEGYLRANKM 444 (896)
Q Consensus 381 EF~G~Gv~sLSv~dRaTIaNMa~E~GAt~g~Fp~D-e~Tl~YL~~----------tgR~-----~~~i~lve~y~k~~~l 444 (896)
|| +|+++||+++|+|||||++|+|||+|+||+| +.|++||+. +||. +++++.++.|++++++
T Consensus 580 Ef--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~ 657 (865)
T 1l5j_A 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 657 (865)
T ss_dssp EE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCC
T ss_pred EE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 98--2510178555655764103108726999377789999998633433333104875201178999999998741650
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 123799999984237999985884-2001389999974236655200354310544677878882111220133028975
Q 002651 445 FVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 523 (896)
Q Consensus 445 ~~~~~~~D~~a~Y~~vieiDLs~i-eP~VAgP~~P~~~v~lse~~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~g~~ 523 (896)
| .+|++|+|+++++||||+| ||+||+|++|||+++++++++.
T Consensus 658 l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~--------------------------------- 700 (865)
T 1l5j_A 658 L----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE--------------------------------- 700 (865)
T ss_dssp C----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC---------------------------------
T ss_pred E----CCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHHHCCC---------------------------------
T ss_conf 0----368998478999997113778876389984754662553303---------------------------------
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECC
Q ss_conf 43468768999721588999857999999999999856984488631898438399999999859269998559499236
Q 002651 524 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 603 (896)
Q Consensus 524 ~~l~~g~V~ia~IgSCTNts~~dlm~AA~lLAk~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~Gll~~L~~aGf~I~~~ 603 (896)
.|+++|||||||+ ++|++.||.+| ||+++++.|+++|+|||++|++||+++|++++|+++||.|.+|
T Consensus 701 ------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~p 767 (865)
T 1l5j_A 701 ------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIP 767 (865)
T ss_dssp ------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCS
T ss_pred ------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCC
T ss_conf ------1016999358899-89999999997------2766689989799798999999999858499999759789378
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 75334379999971000124579706878621577778997998885162498999999770745558888986558999
Q 002651 604 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 683 (896)
Q Consensus 604 GCg~CiGnsg~l~~~~e~~i~~~~l~~~aV~SgNRNF~GRigp~~~~~YLASP~lVvA~AlaG~I~~d~~~eplg~~~~G 683 (896)
|||+||||++.+ .++++ +++|+||||+||||+. ..+|||||++|||+||+|+|
T Consensus 768 gCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAiaG~i--------------- 820 (865)
T 1l5j_A 768 GCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGTG-ANVFLASAELAAVAALIGKL--------------- 820 (865)
T ss_dssp SCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSSTT-CEEEECCHHHHHHHHHHSBC---------------
T ss_pred CCCCCCCCCCCC--------CCCCE---EEECCCCCCCCCCCCC-CCEEECCHHHHHHHHHCCCC---------------
T ss_conf 550265838867--------99998---9966886877777887-50677799999999967868---------------
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 825502599990668987430678421011223
Q 002651 684 KSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYE 716 (896)
Q Consensus 684 ~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~ 716 (896)
|+.+|+.++++..++|+...-+|-
T Consensus 821 ---------~~p~e~~~~~~~~~~~~~~~~~~~ 844 (865)
T 1l5j_A 821 ---------PTPEEYQTYVAQVDKTAVDTYRYL 844 (865)
T ss_dssp ---------CCHHHHHHHHHHHHTTHHHHTCCC
T ss_pred ---------CCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf ---------988999999986228744444267
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=192.62 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=38.3
Q ss_pred EEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCC
Q ss_conf 9972158899985799999--99999998569844886318984383999999998592699985594992367533437
Q 002651 533 IAAITSCTNTSNPSVMLGA--GLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG 610 (896)
Q Consensus 533 ia~IgSCTNts~~dlm~AA--~lLAk~A~~kGlkV~p~VktsvaPGS~~V~~~l~~~Gll~~L~~aGf~I~~~GCg~CiG 610 (896)
.+...-|.+..+++...+- ..+-+-+.++|. . .+-||...+...+.+ +..-|-.+++.---||+.
T Consensus 437 ~vv~~~dh~~~~~~~~~~e~~~~~~~Fa~~~g~------~-~~~pg~GI~Hq~l~~------~~~PG~~ivGtDSHT~~~ 503 (865)
T 1l5j_A 437 LVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGG------V-SLRPGDGVIHSWLNR------MLLPDTVGTGGDSHTRFP 503 (865)
T ss_dssp CEEECCCSSSSSCCHHHHHHHHHHHHHHHTTTC------E-ECCTTSBCHHHHHGG------GCCTTCEEEESSTTCCCS
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC------E-EECCCCCEEEEEECC------CCCCCCEEEECCCCCCCC
T ss_conf 499977877767897889999899999997397------6-747998521034135------020463698279886622
Q ss_pred C
Q ss_conf 9
Q 002651 611 N 611 (896)
Q Consensus 611 n 611 (896)
+
T Consensus 504 ~ 504 (865)
T 1l5j_A 504 I 504 (865)
T ss_dssp S
T ss_pred C
T ss_conf 3
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=150.12 Aligned_cols=105 Identities=21% Similarity=0.334 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 899987788999998886--695799883697533554789998999967778887199865576533566751010012
Q 002651 747 EPPYFKDMTMDPPGAHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARG 824 (896)
Q Consensus 747 ~pp~f~~~~~~~~~~~~i--~~a~vL~~lgD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM~RG 824 (896)
-.|||++|.+.....+.+ ..++++.+.||+|+||||+|| +||.. +.+.+ |.|+
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa----------~~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPK----------QFLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCG----------GGGGS--CTTSC-------------CGGG
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCHH----------HHHCC--CCHHH-------------HHHH
T ss_conf 56655873015556888138999999928987784222669----------88673--89878-------------8888
Q ss_pred CCCCHHHHHHHCCCCCCC-CEEECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf 245725664203897799-226527992314999999999739966999468779971134330197751
Q 002651 825 TFANIRLVNKLLNGEVGP-KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLE 893 (896)
Q Consensus 825 tfaNir~~N~l~~~~~g~-~t~~~p~g~~~~i~daA~~y~~~g~p~vviaG~~YG~GSSRdwAAkgp~lL 893 (896)
+|+|+|..|+ +|.+++ +..+.| +|+. ..|||||+|||+|||||||+++++++
T Consensus 59 ~f~~~r~~~~--~g~~~p~f~~~~~------------~~~~---~~IlvaG~NfGcGSSREhA~~al~~~ 111 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPDFIFNQP------------EYRE---ASILITGDNFGAGSSREHAAWALADY 111 (213)
T ss_dssp TTHHHHBSST--TCCBCTTSGGGSG------------GGTT---CCEEEECSSBTCSSCCHHHHHHHHHH
T ss_pred HHHCCCCCCC--CCCCCCCCCCCCH------------HHCC---CCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 7533402255--8887987011513------------3058---72899358889997779999999984
No 6
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=119.78 Aligned_cols=71 Identities=35% Similarity=0.565 Sum_probs=51.3
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCEEECCC
Q ss_conf 98836975335547899989999677788871998655765335667510100122457256642038977992265279
Q 002651 770 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 849 (896)
Q Consensus 770 L~~lgD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM~RGtfaNir~~N~l~~~~~g~~t~~~p~ 849 (896)
+.++||+|+||||+||. ||. |.|-+.+.+..|.+.+
T Consensus 7 ~~~~~dnidTD~IiPa~----------~l~---------------~~~~~~l~~~~f~~~~------------------- 42 (163)
T 1v7l_A 7 VWKFGDDISTDEITPGR----------YNL---------------TKDPKELAKIAFIEVR------------------- 42 (163)
T ss_dssp EEECCSCCBHHHHSCTT----------SCC---------------CSCHHHHHHHTTTTTC-------------------
T ss_pred EEECCCCCCHHCCCHHH----------HHC---------------CCCHHHHHHHHCCCCC-------------------
T ss_conf 99839988840254377----------738---------------7998899997677668-------------------
Q ss_pred CCEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf 92314999999999739966999468779971134330197751
Q 002651 850 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLE 893 (896)
Q Consensus 850 g~~~~i~daA~~y~~~g~p~vviaG~~YG~GSSRdwAAkgp~lL 893 (896)
.|.+.+++. ..||+||+|||+||||||||++++++
T Consensus 43 ------p~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~ 77 (163)
T 1v7l_A 43 ------PDFARNVRP---GDVVVAGKNFGIGSSRESAALALKAL 77 (163)
T ss_dssp ------TTHHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHH
T ss_pred ------CCHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf ------654773788---87899558678988889999999985
No 7
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=119.27 Aligned_cols=73 Identities=33% Similarity=0.459 Sum_probs=53.4
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCEEE
Q ss_conf 57998836975335547899989999677788871998655765335667510100122457256642038977992265
Q 002651 767 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 846 (896)
Q Consensus 767 a~vL~~lgD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM~RGtfaNir~~N~l~~~~~g~~t~~ 846 (896)
.+ ..++||+|+||||+||. ||. |.|-+.+-+..|.+.+
T Consensus 5 g~-v~~~~dnIdTD~IiPa~----------~l~---------------~~~~~~l~~~~f~~~~---------------- 42 (170)
T 2pkp_A 5 GR-AHKFGDDVDTDAIIPGP----------YLR---------------TTDPYELASHCMAGID---------------- 42 (170)
T ss_dssp EE-EEECCSCCBHHHHSCGG----------GGS---------------CCCHHHHHTTTTTTTC----------------
T ss_pred EE-EEECCCCCCHHHCCHHH----------HHC---------------CCCHHHHHHHHCCCCC----------------
T ss_conf 99-99779988855447277----------758---------------7998999997566678----------------
Q ss_pred CCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf 27992314999999999739966999468779971134330197751
Q 002651 847 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLE 893 (896)
Q Consensus 847 ~p~g~~~~i~daA~~y~~~g~p~vviaG~~YG~GSSRdwAAkgp~lL 893 (896)
| |.+.+++. ..||+||+|||+||||||||+++++|
T Consensus 43 -p--------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~ 77 (170)
T 2pkp_A 43 -E--------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYC 77 (170)
T ss_dssp -T--------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTT
T ss_pred -C--------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf -7--------45773788---87899368778987889999999985
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=102.29 Aligned_cols=75 Identities=35% Similarity=0.516 Sum_probs=51.9
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCE
Q ss_conf 69579988369753355478999899996777888719986557653356675101001224572566420389779922
Q 002651 765 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 844 (896)
Q Consensus 765 ~~a~vL~~lgD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM~RGtfaNir~~N~l~~~~~g~~t 844 (896)
...+++ ++||+|+||+|.||- ||.. .|-+-+-+..|.+.+
T Consensus 5 i~g~v~-~~gdnIdTD~IiPa~----------~l~~---------------~~~~~l~~~~f~~~~-------------- 44 (176)
T 3vba_A 5 IKGRVW-KFGNNVDTDAILPAR----------YLVY---------------TKPEELAQFVMTGAD-------------- 44 (176)
T ss_dssp EEEEEE-ECCSSCBHHHHSCGG----------GTTC---------------CSHHHHGGGTTTTTC--------------
T ss_pred EEEEEE-EECCCCCHHHCCCHH----------HHCC---------------CCHHHHHHHHCCCCC--------------
T ss_conf 888999-908976566438087----------7086---------------998999975176778--------------
Q ss_pred EECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf 6527992314999999999739966999468779971134330197751
Q 002651 845 VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLE 893 (896)
Q Consensus 845 ~~~p~g~~~~i~daA~~y~~~g~p~vviaG~~YG~GSSRdwAAkgp~lL 893 (896)
| |.+.+|+. ..|||||+|||+|||||||+.+++.+
T Consensus 45 ---p--------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~ 79 (176)
T 3vba_A 45 ---P--------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGA 79 (176)
T ss_dssp ---T--------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHT
T ss_pred ---C--------CHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf ---3--------17875478---88899678762885678999999996
No 9
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=97.46 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=56.3
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCC
Q ss_conf 86695799883697533554789998999967778887199865576533566751010012245725664203897799
Q 002651 763 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 842 (896)
Q Consensus 763 ~i~~a~vL~~lgD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM~RGtfaNir~~N~l~~~~~g~ 842 (896)
.....+++.+.||+|.||+|.|+. ||.. + +.+-+-+..|.+.|.. | .
T Consensus 8 ~~~~G~~~~l~~dnIdTD~IiPa~----------~L~~--~-------------~~~~l~~~~f~~~R~~----p----~ 54 (171)
T 3h5j_A 8 HTHSGIGVPLRRSNVDTDQIIPAV----------FLKR--V-------------TRTGFEDGLFAGWRSD----P----A 54 (171)
T ss_dssp SEEEEEEEEECCCSCCHHHHSCGG----------GTTC--C-------------SCSCCGGGTTTTGGGS----T----T
T ss_pred EEEEEEEEECCCCCCCCCCCCCHH----------HCCC--C-------------CHHHHHHHHHCCCCCC----C----C
T ss_conf 799999998668766830177465----------5487--9-------------9899988754067679----6----8
Q ss_pred CEEECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCC
Q ss_conf 226527992314999999999739966999468779971134330197751
Q 002651 843 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLE 893 (896)
Q Consensus 843 ~t~~~p~g~~~~i~daA~~y~~~g~p~vviaG~~YG~GSSRdwAAkgp~lL 893 (896)
+.... .+|+. .-|||||+|||+|||||||+.+++.+
T Consensus 55 F~~~~------------~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~ 90 (171)
T 3h5j_A 55 FVLNL------------SPFDR---GSVLVAGPDFGTGSSREHAVWALMDY 90 (171)
T ss_dssp SGGGS------------TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHH
T ss_pred CCCCC------------CCCCC---CCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 00065------------02479---86899688734886779999999986
No 10
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=84.34 Aligned_cols=86 Identities=24% Similarity=0.392 Sum_probs=52.7
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 66957998836975335547899989999677788871998655765335667510100122457256642038977992
Q 002651 764 VKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPK 843 (896)
Q Consensus 764 i~~a~vL~~lgD~iTTDHISPAG~I~~~s~ag~yL~~~Gv~~~dfNsygsRRgN~evM~RGtfaNir~~N~l~~~~~g~~ 843 (896)
....++..+-+|+|.||+|-|+ +||+. +.+. -+-+..|.+.|... .|.+.
T Consensus 9 ~~~G~a~~l~~dnIDTD~IIP~----------~fL~~--~~~~-------------~lg~~~f~~~R~~~---~g~~~-- 58 (203)
T 3q3w_A 9 IHKGIACPLEYANIDTDQIIPK----------QFLLA--VSKQ-------------GFGKHLFHDLRYLD---DKESV-- 58 (203)
T ss_dssp EEEEEEEEECCSSCBHHHHSCG----------GGCBS--SCSS-------------CSGGGTTHHHHBSS---SSSCS--
T ss_pred EEEEEEEECCCCCCCHHHCCHH----------HHCCC--CCHH-------------HHHHHHHHHHHCCC---CCCCC--
T ss_conf 9999999888865684015509----------77486--8988-------------99886434322135---67877--
Q ss_pred EEECCCCCEECHHHHHHH---HHHCCCCEEEEECCCCCCCHHHHHHHCCCCC
Q ss_conf 265279923149999999---9973996699946877997113433019775
Q 002651 844 TVHVPTGEKLSVFDAAMK---YKSAGHGTIILAGAEYGSGSSRDWAAKGPML 892 (896)
Q Consensus 844 t~~~p~g~~~~i~daA~~---y~~~g~p~vviaG~~YG~GSSRdwAAkgp~l 892 (896)
.-.|.+.+ |+. .-|+|||+|||+|||||||+.+.+.
T Consensus 59 ----------~~pdF~~n~~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~ 97 (203)
T 3q3w_A 59 ----------LNMDFNLNKKEYQN---SSILVSFENFGSGSSREHAPWALVD 97 (203)
T ss_dssp ----------BCTTSGGGSGGGTT---EEEEEECSSBTBSSCCTHHHHHHHH
T ss_pred ----------CCCCHHHCCCCCCC---CCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf ----------89881126533589---8889969877888767899999998
Done!