BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002652
(896 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LGP|A Chain A, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
Checkpoint Protein Complexed With Tungstate
Length = 116
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 79 WGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSN-AVSANHCKIYRKKFAS 137
WG L + + H +LL E IGR SN VS +HC+I
Sbjct: 4 WGRLLRLGAEEGEPH----VLLRKREWTIGRR-RGCDLSFPSNKLVSGDHCRI------- 51
Query: 138 GDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAA---PPQHDLAF 194
+ SG V L+DTST+GT +N + K + + GD+I P+H++A+
Sbjct: 52 --VVDEKSG--QVTLEDTSTSGTVINKLKVVKKQT-CPLQTGDVIYLVYRKNEPEHNVAY 106
Query: 195 AF 196
+
Sbjct: 107 LY 108
>pdb|1G3G|A Chain A, Nmr Structure Of The Fha1 Domain Of Yeast Rad53
Length = 164
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 149 SVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVF 198
++ L D STNGT++N ++ +KNS+++ + GD I+ + D+ +F
Sbjct: 98 NLLLNDISTNGTWLNGQKVEKNSNQL-LSQGDEITVGVGVESDILSLVIF 146
>pdb|2JQI|A Chain A, Nmr Structure Of The Rad53 Fha1 Domain In Complex With A
Phosphothreonien Peptide Derived From Rad53 Scd1
pdb|2A0T|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Biological Relevant Phosphopeptide Derived From Madt1
Length = 151
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 149 SVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVF 198
++ L D STNGT++N ++ +KNS+++ + GD I+ + D+ +F
Sbjct: 85 NLLLNDISTNGTWLNGQKVEKNSNQL-LSQGDEITVGVGVESDILSLVIF 133
>pdb|1J4P|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1J4Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1K3N|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1K3Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1J4O|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
pdb|1K3J|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
Length = 151
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 149 SVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVF 198
++ L D STNGT++N ++ +KNS+++ + GD I+ + D+ +F
Sbjct: 85 NLLLNDISTNGTWLNGQKVEKNSNQL-LSQGDEITVGVGVESDILSLVIF 133
>pdb|1G6G|A Chain A, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
pdb|1G6G|B Chain B, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
Length = 127
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 149 SVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVF 198
++ L D STNGT++N ++ +KNS+++ + GD I+ + D+ +F
Sbjct: 70 NLLLNDISTNGTWLNGQKVEKNSNQL-LSQGDEITVGVGVESDILSLVIF 118
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 298 LKVLRDMLDAKQKELAEISRISAEQKH-EMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356
LK LRD +A+ K+L ++S QK+ E++ N++ + ++ + + + ++ E
Sbjct: 1926 LKKLRDT-EAQVKDL----QVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARE 1980
Query: 357 LKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQ 416
L+ QLD V + A ADL+ A L +E++++L +AA+ +L+Q E++ +
Sbjct: 1981 LQVQLDVRNKEIAVQKVKAYADLEKAEPTGPL--REEVEQLENAANELKLKQDEIVATIT 2038
Query: 417 IAEKQSSLQVESLKLKLDETRERLVTSDNKVR 448
EK + E + ET E++ T +KV+
Sbjct: 2039 ALEKSIATYKEEYATLIRET-EQIKTESSKVK 2069
>pdb|1LGQ|A Chain A, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
Checkpoint Protein
pdb|1LGQ|B Chain B, Crystal Structure Of The Fha Domain Of The Chfr Mitotic
Checkpoint Protein
Length = 112
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 79 WGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNA-VSANHCKIYRKKFAS 137
WG L + + H +LL E IGR SN VS +HC+I + S
Sbjct: 4 WGRLLRLGAEEGEPH----VLLRKREWTIGRR-RGCDLSFPSNKLVSGDHCRIVVDE-KS 57
Query: 138 GDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFA---APPQHDLAF 194
G V L+DTST+GT +N + K + + GD+I P+H++A+
Sbjct: 58 G----------QVTLEDTSTSGTVINKLKVVKKQT-CPLQTGDVIYLVYRKNEPEHNVAY 106
Query: 195 AF 196
+
Sbjct: 107 LY 108
>pdb|3ST1|A Chain A, Crystal Structure Of Necrosis And Ethylene Inducing
Protein 2 From The Causal Agent Of Cocoa's Witches Broom
Disease
Length = 214
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 125 ANHCKIYRKKFASGDLDH--SPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDH--GD 180
N C Y A G+ P+G S KDTS TYV F+ ++ V + D
Sbjct: 33 GNGCHSYPAVDAQGNWSGGLKPTGAPSAACKDTSKAQTYVRSATFQGKTALVYAWYMPKD 92
Query: 181 IISFAAPPQHDLAFAFVFRDVSRSTPTMEGAAA 213
IS +HD A VF ++ T ++G AA
Sbjct: 93 EISTGIGHRHDWEGAVVF--LNSDTQQIDGVAA 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.126 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,276,457
Number of Sequences: 62578
Number of extensions: 1003837
Number of successful extensions: 2762
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 2650
Number of HSP's gapped (non-prelim): 147
length of query: 896
length of database: 14,973,337
effective HSP length: 108
effective length of query: 788
effective length of database: 8,214,913
effective search space: 6473351444
effective search space used: 6473351444
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)