Query 002652
Match_columns 896
No_of_seqs 345 out of 1081
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:21:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.9 2.5E-22 5.4E-27 254.7 42.9 440 148-594 557-1076(1163)
2 KOG0933 Structural maintenance 99.9 5.1E-20 1.1E-24 217.3 33.1 390 156-571 569-1018(1174)
3 TIGR02169 SMC_prok_A chromosom 99.9 1.2E-18 2.7E-23 220.5 44.5 442 148-595 563-1085(1164)
4 KOG0161 Myosin class II heavy 99.8 1.4E-16 3E-21 203.6 47.9 288 291-579 1240-1617(1930)
5 KOG0996 Structural maintenance 99.8 7.2E-17 1.6E-21 193.7 37.9 164 149-318 658-849 (1293)
6 KOG0018 Structural maintenance 99.7 9.7E-15 2.1E-19 174.8 39.2 115 147-263 544-673 (1141)
7 PF01576 Myosin_tail_1: Myosin 99.7 2.9E-19 6.4E-24 219.8 0.0 325 244-574 140-548 (859)
8 KOG0964 Structural maintenance 99.6 7.4E-13 1.6E-17 156.9 37.1 107 159-273 576-702 (1200)
9 TIGR02168 SMC_prok_B chromosom 99.6 3.3E-12 7.2E-17 161.9 44.0 60 536-595 1031-1100(1179)
10 PF00038 Filament: Intermediat 99.5 1.6E-10 3.5E-15 127.4 39.8 270 241-517 17-312 (312)
11 KOG0977 Nuclear envelope prote 99.5 2.6E-11 5.7E-16 140.3 29.8 270 240-517 54-392 (546)
12 PF00498 FHA: FHA domain; Int 99.5 9.9E-14 2.1E-18 119.0 7.4 67 105-185 1-68 (68)
13 cd00060 FHA Forkhead associate 99.2 6.3E-11 1.4E-15 108.0 12.1 91 79-186 1-93 (102)
14 KOG0161 Myosin class II heavy 99.2 2E-07 4.3E-12 121.2 47.7 271 292-564 904-1202(1930)
15 TIGR02168 SMC_prok_B chromosom 99.2 2.5E-07 5.4E-12 117.9 47.3 107 244-351 672-781 (1179)
16 TIGR03354 VI_FHA type VI secre 99.2 4.5E-11 9.7E-16 136.2 11.9 77 95-186 16-96 (396)
17 TIGR02169 SMC_prok_A chromosom 99.2 9.8E-07 2.1E-11 112.8 51.2 10 159-168 109-118 (1164)
18 KOG0933 Structural maintenance 99.1 5E-07 1.1E-11 109.0 41.2 371 209-595 651-1093(1174)
19 COG1196 Smc Chromosome segrega 99.1 5.4E-07 1.2E-11 115.9 44.8 63 209-272 642-704 (1163)
20 KOG1882 Transcriptional regula 99.1 1E-10 2.3E-15 121.4 7.5 129 53-187 148-278 (293)
21 KOG0615 Serine/threonine prote 99.1 1.3E-10 2.8E-15 129.5 7.7 115 73-201 40-158 (475)
22 PLN02927 antheraxanthin epoxid 99.1 3.4E-10 7.4E-15 136.1 10.3 93 77-188 532-638 (668)
23 PRK03918 chromosome segregatio 99.0 5.8E-06 1.3E-10 103.4 45.5 162 426-593 621-797 (880)
24 PRK02224 chromosome segregatio 99.0 2E-05 4.4E-10 98.8 49.0 11 581-591 778-788 (880)
25 PRK02224 chromosome segregatio 99.0 1.9E-05 4.1E-10 99.1 46.4 7 26-32 24-30 (880)
26 COG1716 FOG: FHA domain [Signa 98.9 1.3E-09 2.9E-14 111.3 7.6 73 98-187 84-157 (191)
27 PF00038 Filament: Intermediat 98.9 3.3E-05 7.1E-10 85.5 41.3 102 250-355 5-113 (312)
28 COG3456 Predicted component of 98.9 2.4E-09 5.3E-14 119.7 7.1 73 98-185 21-96 (430)
29 smart00240 FHA Forkhead associ 98.9 2.4E-09 5.2E-14 86.8 5.0 50 105-167 1-52 (52)
30 PF07888 CALCOCO1: Calcium bin 98.8 0.00022 4.8E-09 83.7 45.9 29 246-274 140-168 (546)
31 TIGR00606 rad50 rad50. This fa 98.8 0.00016 3.5E-09 94.6 49.3 45 524-568 1079-1125(1311)
32 PF07888 CALCOCO1: Calcium bin 98.8 0.00094 2E-08 78.6 55.7 31 243-273 144-174 (546)
33 TIGR00606 rad50 rad50. This fa 98.8 0.00019 4.2E-09 93.9 48.4 53 447-500 972-1024(1311)
34 PRK03918 chromosome segregatio 98.8 0.00027 5.8E-09 88.7 48.0 9 125-133 81-89 (880)
35 KOG0976 Rho/Rac1-interacting s 98.8 0.00035 7.5E-09 83.1 44.8 64 240-308 83-146 (1265)
36 KOG1881 Anion exchanger adapto 98.8 1.8E-08 3.9E-13 118.2 9.2 89 103-200 177-266 (793)
37 KOG0612 Rho-associated, coiled 98.8 0.0002 4.3E-09 89.0 43.7 128 444-577 699-850 (1317)
38 KOG0250 DNA repair protein RAD 98.7 8.4E-05 1.8E-09 91.7 38.4 14 581-594 986-999 (1074)
39 KOG0971 Microtubule-associated 98.7 0.00043 9.2E-09 83.5 42.7 73 291-363 271-343 (1243)
40 KOG0977 Nuclear envelope prote 98.7 0.00019 4.2E-09 84.2 38.6 150 247-401 40-196 (546)
41 PF00261 Tropomyosin: Tropomyo 98.6 6.1E-05 1.3E-09 80.8 30.5 70 294-363 6-75 (237)
42 PF00261 Tropomyosin: Tropomyo 98.6 8.9E-05 1.9E-09 79.5 31.2 44 441-484 172-215 (237)
43 KOG0250 DNA repair protein RAD 98.6 0.0022 4.7E-08 79.7 45.7 108 425-533 662-775 (1074)
44 PF12128 DUF3584: Protein of u 98.6 0.0019 4.1E-08 84.0 47.3 30 262-291 401-430 (1201)
45 PF10174 Cast: RIM-binding pro 98.6 0.0016 3.4E-08 80.2 43.7 66 421-486 462-527 (775)
46 KOG0976 Rho/Rac1-interacting s 98.5 0.0013 2.9E-08 78.4 40.3 69 418-486 233-304 (1265)
47 TIGR03185 DNA_S_dndD DNA sulfu 98.5 0.00074 1.6E-08 82.4 40.3 160 429-594 389-561 (650)
48 PF12128 DUF3584: Protein of u 98.5 0.0031 6.8E-08 82.1 48.1 42 320-361 603-644 (1201)
49 KOG1029 Endocytic adaptor prot 98.5 0.00069 1.5E-08 80.6 37.1 52 445-497 528-579 (1118)
50 PRK01156 chromosome segregatio 98.5 0.0066 1.4E-07 76.8 49.1 23 428-450 367-389 (895)
51 KOG0964 Structural maintenance 98.5 0.0016 3.5E-08 79.4 40.3 124 245-371 194-326 (1200)
52 PF10174 Cast: RIM-binding pro 98.5 0.0053 1.1E-07 75.8 45.6 45 297-341 316-360 (775)
53 KOG0996 Structural maintenance 98.5 0.0066 1.4E-07 75.8 45.8 55 444-499 478-532 (1293)
54 PF01576 Myosin_tail_1: Myosin 98.5 2.8E-08 6.2E-13 123.4 0.0 291 292-583 436-760 (859)
55 PRK04863 mukB cell division pr 98.5 0.009 2E-07 78.6 49.4 24 245-268 282-305 (1486)
56 PRK11637 AmiB activator; Provi 98.4 0.00025 5.4E-09 82.3 31.5 25 734-760 388-412 (428)
57 PRK04863 mukB cell division pr 98.4 0.0032 6.9E-08 82.7 44.3 15 581-595 663-677 (1486)
58 KOG0612 Rho-associated, coiled 98.4 0.0012 2.6E-08 82.3 37.9 72 292-363 490-561 (1317)
59 PRK01156 chromosome segregatio 98.4 0.012 2.7E-07 74.4 48.3 12 581-592 798-809 (895)
60 KOG4674 Uncharacterized conser 98.4 0.0048 1E-07 80.6 44.5 278 242-527 738-1064(1822)
61 PF09726 Macoilin: Transmembra 98.4 0.00035 7.7E-09 85.3 33.1 69 431-500 587-655 (697)
62 PHA02562 46 endonuclease subun 98.4 0.00069 1.5E-08 80.8 35.4 15 581-595 465-479 (562)
63 PHA02562 46 endonuclease subun 98.4 0.00037 7.9E-09 83.1 32.9 61 298-358 215-275 (562)
64 KOG1029 Endocytic adaptor prot 98.4 0.001 2.2E-08 79.2 35.2 27 355-381 381-407 (1118)
65 PRK11637 AmiB activator; Provi 98.4 0.0004 8.6E-09 80.6 32.0 60 298-357 63-122 (428)
66 KOG4673 Transcription factor T 98.4 0.011 2.3E-07 70.1 42.1 200 242-443 416-631 (961)
67 KOG0994 Extracellular matrix g 98.3 0.0057 1.2E-07 75.7 39.4 39 426-464 1600-1638(1758)
68 KOG4643 Uncharacterized coiled 98.3 0.024 5.3E-07 69.9 46.1 38 242-279 177-214 (1195)
69 KOG0994 Extracellular matrix g 98.2 0.016 3.4E-07 71.9 39.7 107 419-526 1586-1692(1758)
70 KOG0971 Microtubule-associated 98.2 0.04 8.6E-07 67.3 45.8 18 254-271 229-246 (1243)
71 KOG4674 Uncharacterized conser 98.2 0.044 9.6E-07 72.1 45.8 114 427-540 833-950 (1822)
72 PF09755 DUF2046: Uncharacteri 98.2 0.021 4.6E-07 63.1 39.3 122 240-380 25-148 (310)
73 COG1340 Uncharacterized archae 98.2 0.021 4.5E-07 62.8 37.4 88 241-340 5-92 (294)
74 PRK04778 septation ring format 98.2 0.043 9.4E-07 66.3 47.3 61 440-501 350-410 (569)
75 KOG0963 Transcription factor/C 98.2 0.03 6.4E-07 66.5 39.5 101 421-521 232-343 (629)
76 PRK04778 septation ring format 98.1 0.051 1.1E-06 65.7 42.7 13 214-226 52-64 (569)
77 PF05701 WEMBL: Weak chloropla 98.1 0.048 1E-06 65.2 46.9 65 420-484 284-348 (522)
78 KOG0995 Centromere-associated 98.1 0.046 1E-06 64.4 46.7 49 431-479 432-480 (581)
79 PF05483 SCP-1: Synaptonemal c 98.1 0.053 1.2E-06 64.8 47.3 55 465-520 607-661 (786)
80 COG4942 Membrane-bound metallo 98.1 0.0087 1.9E-07 68.7 32.4 66 298-363 40-105 (420)
81 PF15070 GOLGA2L5: Putative go 98.1 0.07 1.5E-06 64.8 42.5 7 804-810 579-585 (617)
82 KOG0995 Centromere-associated 98.0 0.078 1.7E-06 62.6 45.4 32 241-272 219-251 (581)
83 PF15070 GOLGA2L5: Putative go 98.0 0.067 1.5E-06 65.0 39.3 49 315-363 85-133 (617)
84 PF05701 WEMBL: Weak chloropla 98.0 0.089 1.9E-06 63.0 47.5 22 243-264 35-56 (522)
85 PRK10929 putative mechanosensi 98.0 0.097 2.1E-06 67.3 42.1 31 242-272 58-88 (1109)
86 PRK11281 hypothetical protein; 97.9 0.11 2.5E-06 66.8 41.1 52 293-344 125-176 (1113)
87 COG4942 Membrane-bound metallo 97.9 0.045 9.7E-07 63.0 33.4 65 296-360 45-109 (420)
88 PF09726 Macoilin: Transmembra 97.9 0.02 4.4E-07 70.3 32.7 31 242-272 418-448 (697)
89 PF09730 BicD: Microtubule-ass 97.9 0.17 3.6E-06 62.3 44.3 36 422-457 284-319 (717)
90 KOG0980 Actin-binding protein 97.9 0.15 3.3E-06 62.6 38.6 54 272-326 342-395 (980)
91 PF06160 EzrA: Septation ring 97.9 0.15 3.2E-06 61.6 44.3 13 214-226 48-60 (560)
92 KOG4673 Transcription factor T 97.8 0.15 3.3E-06 60.9 44.8 49 315-363 465-513 (961)
93 PF14662 CCDC155: Coiled-coil 97.8 0.042 9.1E-07 56.9 28.8 181 310-504 8-188 (193)
94 KOG0963 Transcription factor/C 97.8 0.16 3.5E-06 60.5 38.0 52 448-501 306-357 (629)
95 TIGR03185 DNA_S_dndD DNA sulfu 97.8 0.23 5.1E-06 61.0 42.7 71 436-507 389-461 (650)
96 PF09755 DUF2046: Uncharacteri 97.7 0.13 2.8E-06 57.1 38.5 22 548-569 286-308 (310)
97 PF05667 DUF812: Protein of un 97.7 0.12 2.5E-06 62.7 35.2 36 469-505 487-522 (594)
98 KOG4643 Uncharacterized coiled 97.7 0.3 6.4E-06 60.9 45.4 22 753-774 1041-1062(1195)
99 KOG0980 Actin-binding protein 97.7 0.13 2.8E-06 63.2 34.9 154 244-398 335-490 (980)
100 KOG0245 Kinesin-like protein [ 97.7 0.0046 9.9E-08 76.2 23.0 84 96-200 470-556 (1221)
101 COG3883 Uncharacterized protei 97.7 0.089 1.9E-06 57.3 30.0 59 421-479 159-217 (265)
102 KOG0979 Structural maintenance 97.6 0.33 7.2E-06 60.6 37.0 58 538-595 907-974 (1072)
103 KOG0978 E3 ubiquitin ligase in 97.6 0.35 7.5E-06 59.1 38.1 9 468-476 582-590 (698)
104 KOG1880 Nuclear inhibitor of p 97.6 5.9E-05 1.3E-09 81.6 4.9 86 98-200 33-119 (337)
105 COG1579 Zn-ribbon protein, pos 97.6 0.032 6.9E-07 60.0 24.8 30 243-272 11-40 (239)
106 COG5185 HEC1 Protein involved 97.6 0.28 6E-06 56.7 39.9 27 246-272 261-287 (622)
107 PF06160 EzrA: Septation ring 97.6 0.38 8.2E-06 58.2 43.2 11 242-252 60-70 (560)
108 COG1340 Uncharacterized archae 97.5 0.24 5.1E-06 54.8 38.7 60 299-358 37-96 (294)
109 COG1579 Zn-ribbon protein, pos 97.5 0.048 1E-06 58.7 24.5 69 298-366 12-80 (239)
110 KOG0018 Structural maintenance 97.5 0.66 1.4E-05 58.4 40.4 68 296-363 220-287 (1141)
111 KOG0999 Microtubule-associated 97.4 0.48 1E-05 55.7 34.7 76 417-497 149-224 (772)
112 KOG4593 Mitotic checkpoint pro 97.4 0.6 1.3E-05 56.5 47.2 10 642-651 638-647 (716)
113 KOG1003 Actin filament-coating 97.4 0.23 5E-06 51.6 27.6 115 243-358 5-129 (205)
114 PF06705 SF-assemblin: SF-asse 97.4 0.31 6.6E-06 52.8 32.3 134 347-486 7-141 (247)
115 PF13514 AAA_27: AAA domain 97.4 0.97 2.1E-05 59.0 39.6 16 625-640 1080-1095(1111)
116 KOG2129 Uncharacterized conser 97.3 0.49 1.1E-05 54.0 31.8 25 548-572 310-335 (552)
117 KOG0946 ER-Golgi vesicle-tethe 97.3 0.34 7.4E-06 59.2 31.0 76 425-501 807-882 (970)
118 KOG0999 Microtubule-associated 97.3 0.66 1.4E-05 54.6 33.2 104 402-505 106-211 (772)
119 KOG0946 ER-Golgi vesicle-tethe 97.3 0.31 6.7E-06 59.5 30.3 8 270-277 660-667 (970)
120 COG4372 Uncharacterized protei 97.3 0.54 1.2E-05 53.3 34.2 58 280-338 108-165 (499)
121 COG3883 Uncharacterized protei 97.2 0.45 9.8E-06 52.0 29.2 59 300-358 42-100 (265)
122 COG5185 HEC1 Protein involved 97.2 0.67 1.5E-05 53.6 39.2 57 307-363 306-362 (622)
123 COG0419 SbcC ATPase involved i 97.2 1.3 2.8E-05 56.7 49.5 17 808-824 873-891 (908)
124 PF14662 CCDC155: Coiled-coil 97.1 0.28 6.2E-06 51.0 24.4 107 246-356 19-127 (193)
125 PF05483 SCP-1: Synaptonemal c 97.1 1.2 2.5E-05 54.0 47.5 49 315-363 347-395 (786)
126 PRK09039 hypothetical protein; 97.1 0.11 2.3E-06 59.1 23.5 41 414-454 162-203 (343)
127 PF12718 Tropomyosin_1: Tropom 97.1 0.13 2.8E-06 51.4 21.0 29 429-457 99-127 (143)
128 COG0419 SbcC ATPase involved i 97.0 1.9 4E-05 55.2 49.7 18 336-353 327-344 (908)
129 TIGR02680 conserved hypothetic 97.0 2.3 5E-05 56.7 37.7 26 250-275 743-768 (1353)
130 PF15619 Lebercilin: Ciliary p 97.0 0.61 1.3E-05 49.0 27.4 29 427-455 121-149 (194)
131 PRK09039 hypothetical protein; 97.0 0.21 4.7E-06 56.7 24.4 57 424-483 144-200 (343)
132 COG4477 EzrA Negative regulato 96.9 1.4 3E-05 52.1 40.7 72 442-514 351-422 (570)
133 PF09728 Taxilin: Myosin-like 96.9 1.1 2.4E-05 50.4 41.9 72 425-497 203-274 (309)
134 KOG0962 DNA repair protein RAD 96.8 2.9 6.2E-05 54.3 42.9 32 537-568 1081-1112(1294)
135 PF04849 HAP1_N: HAP1 N-termin 96.8 1.2 2.5E-05 49.8 29.3 14 465-478 289-302 (306)
136 PF09728 Taxilin: Myosin-like 96.8 1.3 2.8E-05 49.8 42.8 52 305-356 45-96 (309)
137 TIGR01843 type_I_hlyD type I s 96.8 0.47 1E-05 54.3 25.5 20 242-261 81-100 (423)
138 COG4372 Uncharacterized protei 96.7 1.7 3.7E-05 49.4 33.7 15 720-734 461-477 (499)
139 PF05557 MAD: Mitotic checkpoi 96.6 0.0011 2.5E-08 81.8 3.4 48 294-341 169-216 (722)
140 PF05622 HOOK: HOOK protein; 96.6 0.00048 1E-08 84.9 0.0 34 244-277 248-281 (713)
141 PF05622 HOOK: HOOK protein; 96.6 0.00048 1E-08 84.9 0.0 7 581-587 678-684 (713)
142 PF05911 DUF869: Plant protein 96.6 1.6 3.4E-05 54.6 29.7 98 407-505 593-690 (769)
143 PF05557 MAD: Mitotic checkpoi 96.6 0.013 2.7E-07 72.7 11.6 17 569-585 644-661 (722)
144 PF05667 DUF812: Protein of un 96.5 3.2 7E-05 50.6 36.7 15 548-562 575-589 (594)
145 TIGR01005 eps_transp_fam exopo 96.5 0.37 8.1E-06 60.1 23.7 12 584-595 553-565 (754)
146 PF14915 CCDC144C: CCDC144C pr 96.4 2.1 4.4E-05 47.5 41.0 74 411-484 166-239 (305)
147 KOG1853 LIS1-interacting prote 96.4 1.3 2.9E-05 47.6 23.8 136 303-453 27-162 (333)
148 PF08317 Spc7: Spc7 kinetochor 96.4 2.4 5.2E-05 47.9 30.9 31 242-272 68-98 (325)
149 PF07111 HCR: Alpha helical co 96.4 3.7 8.1E-05 50.1 46.1 55 411-465 250-319 (739)
150 PF09730 BicD: Microtubule-ass 96.4 4.1 9E-05 50.5 43.8 32 241-272 33-64 (717)
151 PF15066 CAGE1: Cancer-associa 96.4 2.9 6.3E-05 48.7 28.1 47 317-363 362-408 (527)
152 PF06008 Laminin_I: Laminin Do 96.4 2.1 4.6E-05 46.8 33.8 27 240-266 15-41 (264)
153 PF15619 Lebercilin: Ciliary p 96.4 1.7 3.7E-05 45.7 27.6 62 421-482 122-187 (194)
154 PF04912 Dynamitin: Dynamitin 96.3 2.5 5.4E-05 48.8 27.8 22 240-261 92-113 (388)
155 TIGR03007 pepcterm_ChnLen poly 96.3 0.79 1.7E-05 54.3 24.2 30 243-272 162-191 (498)
156 PF05911 DUF869: Plant protein 96.3 4.9 0.00011 50.4 35.5 106 251-363 40-145 (769)
157 KOG1003 Actin filament-coating 96.3 1.8 3.9E-05 45.3 27.8 47 435-481 134-180 (205)
158 TIGR02680 conserved hypothetic 96.2 7.5 0.00016 52.0 44.2 14 242-255 220-233 (1353)
159 PF05010 TACC: Transforming ac 96.2 2.1 4.5E-05 45.5 31.3 51 308-358 60-110 (207)
160 TIGR01005 eps_transp_fam exopo 96.2 0.64 1.4E-05 58.1 24.0 22 293-314 198-219 (754)
161 TIGR03007 pepcterm_ChnLen poly 96.2 0.2 4.2E-06 59.4 18.6 64 429-497 315-378 (498)
162 PRK10246 exonuclease subunit S 96.2 6.9 0.00015 51.1 46.2 11 581-591 946-956 (1047)
163 KOG0978 E3 ubiquitin ligase in 96.1 5.4 0.00012 49.2 44.8 13 548-560 605-617 (698)
164 TIGR00634 recN DNA repair prot 96.1 2.8 6.1E-05 50.8 27.7 13 583-595 439-451 (563)
165 KOG4809 Rab6 GTPase-interactin 96.1 4.5 9.8E-05 48.0 29.0 36 294-329 336-371 (654)
166 COG4913 Uncharacterized protei 96.0 5.6 0.00012 48.7 30.3 40 241-280 615-654 (1104)
167 PRK11281 hypothetical protein; 96.0 8.5 0.00018 50.3 36.7 27 534-560 425-451 (1113)
168 KOG2129 Uncharacterized conser 96.0 4.3 9.3E-05 46.6 30.4 20 242-261 50-69 (552)
169 PF05010 TACC: Transforming ac 96.0 2.8 6.1E-05 44.5 30.0 37 465-502 167-203 (207)
170 PF09787 Golgin_A5: Golgin sub 95.9 5.6 0.00012 47.8 35.6 17 297-313 156-172 (511)
171 PRK10929 putative mechanosensi 95.9 9.1 0.0002 50.0 36.8 24 534-557 401-424 (1109)
172 TIGR01843 type_I_hlyD type I s 95.9 2.9 6.4E-05 47.8 25.5 23 246-268 78-100 (423)
173 TIGR00634 recN DNA repair prot 95.8 4.4 9.6E-05 49.1 27.8 7 161-167 110-116 (563)
174 KOG4302 Microtubule-associated 95.8 3.4 7.3E-05 50.7 26.2 29 305-333 56-84 (660)
175 PRK10869 recombination and rep 95.8 6 0.00013 48.0 28.4 13 583-595 429-441 (553)
176 PRK10246 exonuclease subunit S 95.7 11 0.00023 49.3 46.4 18 243-260 531-548 (1047)
177 TIGR03017 EpsF chain length de 95.6 3 6.5E-05 48.6 24.7 14 349-362 258-271 (444)
178 KOG0249 LAR-interacting protei 95.5 5.7 0.00012 48.5 26.0 13 605-617 413-425 (916)
179 KOG4809 Rab6 GTPase-interactin 95.5 7.5 0.00016 46.2 36.2 21 500-520 519-539 (654)
180 KOG1899 LAR transmembrane tyro 95.5 2.2 4.8E-05 51.1 22.2 38 227-264 96-133 (861)
181 smart00787 Spc7 Spc7 kinetocho 95.5 5.8 0.00013 44.8 29.3 36 445-480 225-260 (312)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.5 2.8 6.1E-05 41.2 20.1 40 319-358 5-44 (132)
183 COG4477 EzrA Negative regulato 95.4 8 0.00017 46.1 41.5 24 534-557 444-467 (570)
184 PF06705 SF-assemblin: SF-asse 95.4 4.9 0.00011 43.6 37.4 71 322-392 68-139 (247)
185 KOG0962 DNA repair protein RAD 95.4 14 0.00029 48.5 44.0 46 439-486 1009-1054(1294)
186 PF13166 AAA_13: AAA domain 95.2 11 0.00025 46.6 38.2 31 568-598 484-514 (712)
187 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.0 4 8.8E-05 40.1 19.9 30 243-272 4-33 (132)
188 TIGR01000 bacteriocin_acc bact 95.0 7.6 0.00017 45.8 25.4 21 465-485 297-317 (457)
189 PF05384 DegS: Sensor protein 94.9 4.1 8.8E-05 41.6 19.6 118 242-363 27-151 (159)
190 KOG0249 LAR-interacting protei 94.9 6.9 0.00015 47.8 24.1 15 471-485 221-235 (916)
191 KOG0979 Structural maintenance 94.9 16 0.00035 46.5 33.4 31 242-272 629-659 (1072)
192 PF03148 Tektin: Tektin family 94.9 10 0.00022 44.0 39.1 49 315-363 121-169 (384)
193 PRK10869 recombination and rep 94.8 13 0.00028 45.2 27.9 16 538-553 360-375 (553)
194 PF04849 HAP1_N: HAP1 N-termin 94.8 8.7 0.00019 43.1 28.3 21 465-485 240-260 (306)
195 PLN03229 acetyl-coenzyme A car 94.7 12 0.00025 46.6 25.9 11 146-156 242-252 (762)
196 TIGR02500 type_III_yscD type I 94.7 0.11 2.4E-06 60.4 8.8 83 93-200 10-95 (410)
197 PF13851 GAS: Growth-arrest sp 94.6 7.4 0.00016 41.2 26.8 24 372-395 148-171 (201)
198 PF13514 AAA_27: AAA domain 94.3 25 0.00054 46.3 46.5 10 581-590 1022-1031(1111)
199 COG0497 RecN ATPase involved i 94.3 16 0.00035 44.2 27.6 74 445-523 297-370 (557)
200 KOG2293 Daxx-interacting prote 94.3 0.076 1.7E-06 62.1 6.4 82 98-199 443-530 (547)
201 KOG1853 LIS1-interacting prote 94.3 9.6 0.00021 41.4 22.3 44 403-446 31-74 (333)
202 PF10168 Nup88: Nuclear pore c 94.3 7.4 0.00016 48.7 23.7 38 417-454 632-669 (717)
203 PF12325 TMF_TATA_bd: TATA ele 94.2 1.9 4.2E-05 42.0 14.8 96 240-358 14-109 (120)
204 PF14915 CCDC144C: CCDC144C pr 94.2 11 0.00025 41.8 41.5 59 426-484 146-204 (305)
205 KOG1103 Predicted coiled-coil 94.1 13 0.00028 42.0 26.1 39 502-540 241-279 (561)
206 KOG1892 Actin filament-binding 94.1 0.17 3.7E-06 62.3 8.9 93 77-187 354-448 (1629)
207 PF15450 DUF4631: Domain of un 94.0 17 0.00037 43.3 46.0 14 217-230 75-88 (531)
208 PF10481 CENP-F_N: Cenp-F N-te 93.9 3.1 6.7E-05 45.5 16.9 36 392-427 7-42 (307)
209 PF10498 IFT57: Intra-flagella 93.8 3.1 6.8E-05 47.7 18.1 97 293-392 245-346 (359)
210 PF08614 ATG16: Autophagy prot 93.8 0.62 1.3E-05 48.7 11.6 21 242-262 67-87 (194)
211 PF09304 Cortex-I_coil: Cortex 93.8 4.6 0.0001 38.5 15.9 67 299-365 12-78 (107)
212 PF12795 MscS_porin: Mechanose 93.8 12 0.00025 40.5 24.3 16 403-418 192-207 (240)
213 PF10168 Nup88: Nuclear pore c 93.8 8.4 0.00018 48.2 22.9 34 315-348 584-617 (717)
214 PF09787 Golgin_A5: Golgin sub 93.7 20 0.00044 43.1 37.0 20 315-334 185-204 (511)
215 COG4026 Uncharacterized protei 93.7 1.4 3E-05 46.8 13.5 67 297-363 136-202 (290)
216 PF00769 ERM: Ezrin/radixin/mo 93.7 5 0.00011 43.7 18.5 58 439-497 69-126 (246)
217 KOG4360 Uncharacterized coiled 93.6 20 0.00044 42.5 25.3 36 293-328 87-122 (596)
218 PLN02939 transferase, transfer 93.5 31 0.00067 44.5 32.4 9 843-851 864-872 (977)
219 PRK12704 phosphodiesterase; Pr 93.5 23 0.00049 42.9 25.4 15 730-744 414-429 (520)
220 PF08614 ATG16: Autophagy prot 93.5 1.1 2.3E-05 46.9 12.7 30 242-271 74-103 (194)
221 TIGR03017 EpsF chain length de 93.4 20 0.00042 41.9 28.6 21 294-314 176-196 (444)
222 PF06785 UPF0242: Uncharacteri 93.4 17 0.00036 41.1 21.9 85 420-505 102-186 (401)
223 PF13166 AAA_13: AAA domain 93.4 27 0.00058 43.3 28.7 53 446-499 418-470 (712)
224 TIGR03319 YmdA_YtgF conserved 93.2 24 0.00053 42.5 25.7 11 734-744 413-423 (514)
225 KOG4593 Mitotic checkpoint pro 93.2 27 0.00059 42.9 44.5 64 421-484 423-486 (716)
226 PF12252 SidE: Dot/Icm substra 93.1 34 0.00074 43.9 30.6 63 251-313 1065-1148(1439)
227 smart00787 Spc7 Spc7 kinetocho 93.1 19 0.00041 40.8 31.1 32 241-272 62-93 (312)
228 KOG4807 F-actin binding protei 93.0 21 0.00045 41.0 29.8 40 242-281 291-330 (593)
229 PF00769 ERM: Ezrin/radixin/mo 93.0 8 0.00017 42.2 18.7 15 471-485 187-201 (246)
230 PF12325 TMF_TATA_bd: TATA ele 93.0 7 0.00015 38.2 16.3 92 242-335 23-114 (120)
231 PRK10361 DNA recombination pro 92.9 25 0.00055 41.9 26.7 24 372-395 104-127 (475)
232 PF09789 DUF2353: Uncharacteri 92.9 20 0.00043 40.6 24.8 30 252-281 12-41 (319)
233 KOG0243 Kinesin-like protein [ 92.8 38 0.00083 43.7 39.4 70 294-363 446-515 (1041)
234 COG2433 Uncharacterized conser 92.7 5.3 0.00012 48.1 17.9 73 423-500 435-507 (652)
235 PF13870 DUF4201: Domain of un 92.6 13 0.00028 38.2 18.8 33 240-272 40-72 (177)
236 KOG4807 F-actin binding protei 92.5 24 0.00052 40.6 32.5 38 420-457 417-454 (593)
237 KOG1899 LAR transmembrane tyro 92.5 23 0.00051 42.9 22.5 24 517-540 278-301 (861)
238 KOG0982 Centrosomal protein Nu 92.3 27 0.00058 40.7 34.1 108 241-358 221-331 (502)
239 KOG4302 Microtubule-associated 92.3 36 0.00079 42.1 36.5 24 532-555 359-382 (660)
240 TIGR01663 PNK-3'Pase polynucle 92.2 0.42 9.2E-06 57.3 8.4 77 96-187 25-101 (526)
241 PF14073 Cep57_CLD: Centrosome 92.2 17 0.00036 37.9 21.2 34 240-273 2-35 (178)
242 KOG2991 Splicing regulator [RN 92.1 21 0.00045 39.0 29.0 39 303-341 122-160 (330)
243 KOG0241 Kinesin-like protein [ 92.1 6.8 0.00015 49.2 18.0 69 102-186 466-534 (1714)
244 COG3096 MukB Uncharacterized p 92.0 39 0.00084 41.9 38.2 52 312-363 357-408 (1480)
245 TIGR02977 phageshock_pspA phag 92.0 19 0.00042 38.3 25.4 43 426-468 101-143 (219)
246 PF15254 CCDC14: Coiled-coil d 91.7 43 0.00093 41.8 24.7 30 524-553 526-555 (861)
247 PLN02939 transferase, transfer 91.7 51 0.0011 42.6 31.8 36 518-553 360-395 (977)
248 KOG1937 Uncharacterized conser 91.7 33 0.00071 40.3 35.7 45 440-484 384-428 (521)
249 KOG0804 Cytoplasmic Zn-finger 91.6 9.7 0.00021 44.4 17.8 20 54-73 51-70 (493)
250 PF10498 IFT57: Intra-flagella 91.6 14 0.00031 42.5 19.3 12 121-132 112-123 (359)
251 PRK00106 hypothetical protein; 91.5 40 0.00086 40.9 27.4 10 734-743 434-443 (535)
252 KOG0579 Ste20-like serine/thre 91.3 44 0.00096 41.1 43.8 50 241-290 796-850 (1187)
253 PF15254 CCDC14: Coiled-coil d 91.2 48 0.001 41.4 27.6 7 734-740 750-756 (861)
254 PF11932 DUF3450: Protein of u 91.2 17 0.00036 39.6 18.7 48 305-352 58-105 (251)
255 PF10481 CENP-F_N: Cenp-F N-te 91.1 10 0.00022 41.7 16.3 46 240-285 16-61 (307)
256 KOG4438 Centromere-associated 91.1 36 0.00078 39.7 37.4 54 292-345 148-201 (446)
257 PF04156 IncA: IncA protein; 90.9 14 0.0003 38.2 17.0 15 246-260 85-99 (191)
258 PF15294 Leu_zip: Leucine zipp 90.8 11 0.00024 41.7 16.8 45 315-359 130-174 (278)
259 PF09304 Cortex-I_coil: Cortex 90.5 11 0.00024 36.0 14.0 48 298-345 25-72 (107)
260 PRK10884 SH3 domain-containing 90.5 4.5 9.7E-05 43.0 13.0 10 176-185 50-59 (206)
261 PF15397 DUF4618: Domain of un 90.3 33 0.00071 37.8 31.5 20 353-372 121-140 (258)
262 KOG4787 Uncharacterized conser 90.0 52 0.0011 39.8 25.0 27 426-452 461-487 (852)
263 PF06818 Fez1: Fez1; InterPro 90.0 29 0.00063 36.8 22.6 19 377-395 134-152 (202)
264 PF04111 APG6: Autophagy prote 89.8 7.1 0.00015 44.1 14.7 20 328-347 61-80 (314)
265 PF13851 GAS: Growth-arrest sp 89.6 31 0.00067 36.5 27.7 32 465-497 99-130 (201)
266 PF11559 ADIP: Afadin- and alp 89.4 25 0.00054 35.1 20.0 37 330-366 100-136 (151)
267 COG2433 Uncharacterized conser 89.2 9.3 0.0002 46.2 15.4 85 293-378 419-506 (652)
268 KOG4360 Uncharacterized coiled 89.2 56 0.0012 39.0 23.4 39 441-479 264-302 (596)
269 TIGR01000 bacteriocin_acc bact 89.2 54 0.0012 38.8 27.3 7 566-572 322-328 (457)
270 PLN03188 kinesin-12 family pro 89.2 89 0.0019 41.3 34.6 23 538-560 1230-1252(1320)
271 KOG0244 Kinesin-like protein [ 89.1 77 0.0017 40.5 27.2 88 294-381 472-562 (913)
272 KOG1850 Myosin-like coiled-coi 88.8 46 0.001 37.5 38.2 205 315-533 107-312 (391)
273 PF00901 Orbi_VP5: Orbivirus o 88.7 36 0.00078 40.4 19.4 109 219-334 53-171 (508)
274 PF08826 DMPK_coil: DMPK coile 88.6 6.4 0.00014 34.0 10.1 49 310-358 11-59 (61)
275 PF09731 Mitofilin: Mitochondr 88.6 67 0.0015 39.1 27.5 22 536-557 465-486 (582)
276 KOG1850 Myosin-like coiled-coi 88.5 48 0.001 37.4 42.3 52 465-517 228-279 (391)
277 COG4026 Uncharacterized protei 88.4 9.2 0.0002 40.8 13.2 64 406-469 138-201 (290)
278 PF09738 DUF2051: Double stran 88.2 31 0.00066 38.9 18.1 28 244-271 79-106 (302)
279 PF14992 TMCO5: TMCO5 family 88.1 31 0.00066 38.4 17.5 32 426-457 111-142 (280)
280 PLN03229 acetyl-coenzyme A car 88.0 83 0.0018 39.5 24.2 59 491-555 669-730 (762)
281 COG0497 RecN ATPase involved i 87.9 74 0.0016 38.8 28.3 40 404-443 298-337 (557)
282 PF04012 PspA_IM30: PspA/IM30 87.9 40 0.00087 35.7 26.6 11 328-338 41-51 (221)
283 PF15397 DUF4618: Domain of un 87.7 49 0.0011 36.5 31.2 30 474-504 187-216 (258)
284 PF12777 MT: Microtubule-bindi 87.7 56 0.0012 37.3 22.3 24 241-264 7-30 (344)
285 PRK10884 SH3 domain-containing 87.7 8.9 0.00019 40.8 12.9 23 240-262 91-113 (206)
286 KOG0804 Cytoplasmic Zn-finger 87.4 37 0.00081 39.9 18.2 11 125-135 102-112 (493)
287 KOG0982 Centrosomal protein Nu 87.3 66 0.0014 37.6 31.5 46 295-340 221-266 (502)
288 KOG1937 Uncharacterized conser 87.2 69 0.0015 37.7 35.2 9 192-200 204-212 (521)
289 PRK00106 hypothetical protein; 87.2 80 0.0017 38.4 27.3 8 564-571 374-381 (535)
290 PF09738 DUF2051: Double stran 86.9 44 0.00095 37.7 18.3 23 412-434 221-243 (302)
291 PF05335 DUF745: Protein of un 86.9 44 0.00096 35.2 17.2 90 426-516 83-172 (188)
292 PF03148 Tektin: Tektin family 86.9 68 0.0015 37.3 43.0 39 448-486 247-285 (384)
293 PF15450 DUF4631: Domain of un 86.5 82 0.0018 37.9 45.0 33 472-505 411-443 (531)
294 KOG2991 Splicing regulator [RN 86.4 56 0.0012 35.8 22.7 63 424-486 243-305 (330)
295 PRK10698 phage shock protein P 86.4 51 0.0011 35.4 26.4 42 426-467 101-142 (222)
296 KOG1103 Predicted coiled-coil 86.2 67 0.0015 36.6 25.0 35 319-353 141-175 (561)
297 PF04012 PspA_IM30: PspA/IM30 86.0 50 0.0011 34.9 22.2 44 315-358 89-132 (221)
298 PF06818 Fez1: Fez1; InterPro 85.8 53 0.0011 35.0 22.0 45 294-345 15-59 (202)
299 PF04912 Dynamitin: Dynamitin 85.6 78 0.0017 36.7 25.2 51 507-557 337-388 (388)
300 PF10234 Cluap1: Clusterin-ass 85.2 67 0.0014 35.7 19.4 87 418-505 163-256 (267)
301 KOG0163 Myosin class VI heavy 85.1 1.1E+02 0.0025 38.2 24.6 27 636-662 1164-1190(1259)
302 TIGR03752 conj_TIGR03752 integ 84.6 10 0.00022 44.8 12.3 37 242-278 59-95 (472)
303 COG4913 Uncharacterized protei 84.4 1.2E+02 0.0026 37.9 28.9 55 451-505 767-822 (1104)
304 PTZ00121 MAEBL; Provisional 84.4 1.7E+02 0.0036 39.5 40.8 11 607-617 1844-1854(2084)
305 KOG1924 RhoA GTPase effector D 84.3 1.7 3.6E-05 53.3 5.9 31 31-61 538-568 (1102)
306 TIGR01010 BexC_CtrB_KpsE polys 83.7 38 0.00083 38.6 16.6 22 293-314 174-195 (362)
307 PF07798 DUF1640: Protein of u 83.6 58 0.0012 33.6 22.3 44 347-390 53-96 (177)
308 PF15290 Syntaphilin: Golgi-lo 83.6 42 0.00092 37.2 15.6 10 548-557 160-169 (305)
309 PF12777 MT: Microtubule-bindi 83.6 88 0.0019 35.7 25.8 51 453-504 222-272 (344)
310 PF08581 Tup_N: Tup N-terminal 83.2 22 0.00048 32.3 11.3 49 474-523 26-74 (79)
311 PRK11519 tyrosine kinase; Prov 83.0 59 0.0013 40.8 19.0 23 498-520 373-395 (719)
312 PRK10698 phage shock protein P 82.9 73 0.0016 34.3 23.3 49 474-523 100-148 (222)
313 PF15035 Rootletin: Ciliary ro 82.8 66 0.0014 33.7 18.6 9 357-365 65-73 (182)
314 TIGR01010 BexC_CtrB_KpsE polys 82.7 62 0.0014 36.9 17.7 14 187-200 27-40 (362)
315 COG1842 PspA Phage shock prote 82.6 77 0.0017 34.3 25.6 43 316-358 91-133 (225)
316 KOG0163 Myosin class VI heavy 82.6 1.4E+02 0.0031 37.4 24.2 31 341-371 892-922 (1259)
317 KOG1962 B-cell receptor-associ 82.4 20 0.00043 38.5 12.4 16 241-256 113-128 (216)
318 KOG4787 Uncharacterized conser 82.2 1.3E+02 0.0028 36.6 22.5 42 445-486 501-542 (852)
319 PF12761 End3: Actin cytoskele 82.1 27 0.00058 36.9 13.0 40 224-265 80-119 (195)
320 PF14992 TMCO5: TMCO5 family 81.9 78 0.0017 35.3 17.1 32 242-273 11-42 (280)
321 PF05335 DUF745: Protein of un 81.9 73 0.0016 33.6 21.2 59 426-484 111-169 (188)
322 PF14197 Cep57_CLD_2: Centroso 81.9 20 0.00044 31.7 10.3 60 294-353 3-62 (69)
323 PF05276 SH3BP5: SH3 domain-bi 81.9 85 0.0018 34.3 29.7 49 457-506 119-167 (239)
324 PF06785 UPF0242: Uncharacteri 81.7 1E+02 0.0022 35.1 22.3 23 412-434 196-218 (401)
325 PF10234 Cluap1: Clusterin-ass 81.4 45 0.00098 37.0 15.1 21 241-261 119-139 (267)
326 PF04582 Reo_sigmaC: Reovirus 81.4 2.6 5.6E-05 47.5 5.7 59 300-358 74-132 (326)
327 PF10212 TTKRSYEDQ: Predicted 81.2 1.3E+02 0.0029 36.2 23.4 89 444-533 419-507 (518)
328 PRK09841 cryptic autophosphory 81.2 64 0.0014 40.6 18.4 24 372-395 272-295 (726)
329 PF02403 Seryl_tRNA_N: Seryl-t 81.1 24 0.00052 33.1 11.5 64 294-357 34-100 (108)
330 COG3096 MukB Uncharacterized p 81.0 1.6E+02 0.0035 36.9 37.4 69 295-363 835-904 (1480)
331 KOG1924 RhoA GTPase effector D 80.8 3.3 7.1E-05 50.9 6.6 16 118-133 634-649 (1102)
332 KOG4403 Cell surface glycoprot 80.8 1.2E+02 0.0027 35.5 21.3 157 338-520 235-422 (575)
333 KOG2685 Cystoskeletal protein 80.6 1.2E+02 0.0027 35.4 35.4 27 330-356 163-189 (421)
334 PF14073 Cep57_CLD: Centrosome 80.5 79 0.0017 33.1 23.0 44 426-469 122-165 (178)
335 PF07889 DUF1664: Protein of u 80.5 52 0.0011 32.6 13.6 52 445-497 68-119 (126)
336 PLN03188 kinesin-12 family pro 80.4 2.1E+02 0.0047 38.0 31.7 15 247-261 991-1005(1320)
337 PF10267 Tmemb_cc2: Predicted 80.4 58 0.0012 38.1 16.2 41 298-341 253-293 (395)
338 KOG0239 Kinesin (KAR3 subfamil 80.3 1.1E+02 0.0024 38.3 19.6 15 661-675 547-561 (670)
339 PF05266 DUF724: Protein of un 80.3 56 0.0012 34.4 14.8 45 314-358 128-172 (190)
340 PRK00409 recombination and DNA 80.2 36 0.00079 43.2 15.9 6 150-155 410-415 (782)
341 PF04102 SlyX: SlyX; InterPro 80.1 9 0.0002 33.6 7.6 51 294-344 2-52 (69)
342 PF05278 PEARLI-4: Arabidopsis 80.0 77 0.0017 35.2 16.1 53 301-353 198-250 (269)
343 PF05278 PEARLI-4: Arabidopsis 79.9 53 0.0012 36.4 14.9 61 298-358 202-262 (269)
344 TIGR01069 mutS2 MutS2 family p 79.1 49 0.0011 42.0 16.4 12 149-160 404-415 (771)
345 PF07111 HCR: Alpha helical co 79.0 1.8E+02 0.0039 36.3 45.8 71 432-502 515-585 (739)
346 KOG0288 WD40 repeat protein Ti 79.0 1E+02 0.0022 36.1 17.2 15 733-747 363-377 (459)
347 PF04582 Reo_sigmaC: Reovirus 78.8 3.9 8.6E-05 46.1 6.1 65 294-358 82-146 (326)
348 KOG3091 Nuclear pore complex, 78.8 87 0.0019 37.4 17.0 24 427-450 372-395 (508)
349 PF08580 KAR9: Yeast cortical 78.7 1.9E+02 0.0041 36.4 27.3 61 424-484 199-267 (683)
350 PRK00409 recombination and DNA 78.6 72 0.0016 40.6 17.7 7 648-654 739-745 (782)
351 PF15290 Syntaphilin: Golgi-lo 78.6 34 0.00073 37.9 12.7 14 344-357 123-136 (305)
352 PF09731 Mitofilin: Mitochondr 78.5 1.7E+02 0.0037 35.7 29.2 10 509-518 430-439 (582)
353 PF05700 BCAS2: Breast carcino 78.4 1E+02 0.0022 33.1 17.8 108 243-358 98-209 (221)
354 KOG3091 Nuclear pore complex, 78.2 1.3E+02 0.0029 35.9 18.2 7 159-165 156-162 (508)
355 KOG4438 Centromere-associated 78.0 1.5E+02 0.0033 34.9 39.8 15 541-555 404-418 (446)
356 PF09789 DUF2353: Uncharacteri 77.9 1.3E+02 0.0029 34.2 28.1 44 462-506 136-179 (319)
357 PF10211 Ax_dynein_light: Axon 77.7 97 0.0021 32.5 16.0 63 327-389 123-185 (189)
358 PRK00295 hypothetical protein; 77.6 16 0.00034 32.2 8.3 49 295-343 4-52 (68)
359 PF09744 Jnk-SapK_ap_N: JNK_SA 77.6 80 0.0017 32.4 14.5 18 315-332 94-111 (158)
360 PF07106 TBPIP: Tat binding pr 77.5 23 0.00049 36.1 10.8 16 315-330 91-106 (169)
361 KOG1265 Phospholipase C [Lipid 77.5 2.2E+02 0.0048 36.5 26.6 13 278-290 950-962 (1189)
362 KOG2264 Exostosin EXT1L [Signa 77.4 16 0.00034 43.8 10.5 55 311-365 94-148 (907)
363 PF12072 DUF3552: Domain of un 77.4 1E+02 0.0022 32.6 26.1 19 292-310 67-85 (201)
364 PF10211 Ax_dynein_light: Axon 77.4 99 0.0022 32.5 20.4 17 239-255 30-46 (189)
365 TIGR02231 conserved hypothetic 77.0 23 0.0005 42.6 12.4 31 242-272 71-101 (525)
366 TIGR01069 mutS2 MutS2 family p 77.0 70 0.0015 40.6 17.0 7 648-654 728-734 (771)
367 PRK04406 hypothetical protein; 76.9 18 0.00039 32.5 8.6 48 294-341 9-56 (75)
368 PF03999 MAP65_ASE1: Microtubu 76.6 3.1 6.7E-05 51.1 5.0 39 295-333 83-121 (619)
369 PF07889 DUF1664: Protein of u 76.4 70 0.0015 31.6 13.2 25 245-269 39-63 (126)
370 COG1842 PspA Phage shock prote 76.2 1.2E+02 0.0026 32.8 27.0 15 321-335 35-49 (225)
371 KOG0239 Kinesin (KAR3 subfamil 76.2 2.2E+02 0.0047 35.8 22.2 20 537-557 294-313 (670)
372 KOG0243 Kinesin-like protein [ 75.6 2.7E+02 0.0057 36.5 42.5 68 298-365 478-545 (1041)
373 PRK09841 cryptic autophosphory 75.1 1.1E+02 0.0023 38.7 17.9 33 584-621 538-572 (726)
374 PF07106 TBPIP: Tat binding pr 75.0 29 0.00063 35.4 10.8 59 428-486 76-136 (169)
375 TIGR02338 gimC_beta prefoldin, 74.9 48 0.001 31.5 11.6 28 244-271 5-32 (110)
376 PRK00736 hypothetical protein; 74.8 19 0.00041 31.7 8.0 47 296-342 5-51 (68)
377 PRK11519 tyrosine kinase; Prov 74.7 67 0.0014 40.4 15.9 36 582-621 531-567 (719)
378 PRK04325 hypothetical protein; 74.5 19 0.00041 32.2 8.1 47 295-341 8-54 (74)
379 PF09744 Jnk-SapK_ap_N: JNK_SA 73.8 1.1E+02 0.0024 31.3 14.7 36 312-347 98-133 (158)
380 PF11172 DUF2959: Protein of u 73.7 1.3E+02 0.0028 32.0 20.1 32 293-324 61-92 (201)
381 PF05266 DUF724: Protein of un 73.6 1.3E+02 0.0027 31.8 16.3 17 376-392 161-177 (190)
382 PF09403 FadA: Adhesion protei 73.3 78 0.0017 31.3 12.7 27 332-358 94-120 (126)
383 PRK02119 hypothetical protein; 73.2 23 0.00049 31.6 8.2 49 294-342 7-55 (73)
384 PF02841 GBP_C: Guanylate-bind 73.1 1.3E+02 0.0029 33.4 16.4 124 293-416 173-297 (297)
385 PRK02793 phi X174 lysis protei 73.0 21 0.00046 31.7 8.0 48 295-342 7-54 (72)
386 COG1382 GimC Prefoldin, chaper 72.8 1E+02 0.0022 30.3 13.1 31 242-272 6-36 (119)
387 PF10212 TTKRSYEDQ: Predicted 72.6 2.3E+02 0.0049 34.4 20.8 97 322-430 418-514 (518)
388 PF03915 AIP3: Actin interacti 72.6 2.1E+02 0.0045 33.9 19.3 9 150-158 42-50 (424)
389 KOG2077 JNK/SAPK-associated pr 71.7 86 0.0019 38.0 14.5 30 219-255 285-314 (832)
390 KOG4572 Predicted DNA-binding 71.7 2.9E+02 0.0062 35.1 31.7 8 651-658 1398-1405(1424)
391 PF10205 KLRAQ: Predicted coil 71.6 67 0.0014 30.7 11.2 57 448-505 15-71 (102)
392 KOG0972 Huntingtin interacting 71.5 1.8E+02 0.0039 32.7 17.2 20 328-347 270-289 (384)
393 PRK09343 prefoldin subunit bet 71.5 1E+02 0.0022 30.1 13.0 12 244-255 9-20 (121)
394 PF04899 MbeD_MobD: MbeD/MobD 71.4 60 0.0013 28.9 10.3 37 296-332 28-64 (70)
395 PF15456 Uds1: Up-regulated Du 71.1 81 0.0017 31.1 12.2 32 240-272 20-51 (124)
396 PF11932 DUF3450: Protein of u 70.8 1.6E+02 0.0035 31.9 19.7 65 292-356 52-116 (251)
397 PRK13729 conjugal transfer pil 70.8 14 0.00031 43.7 8.1 9 193-201 29-37 (475)
398 PF03915 AIP3: Actin interacti 70.1 2.4E+02 0.0051 33.5 18.4 15 241-255 150-164 (424)
399 PRK15178 Vi polysaccharide exp 70.0 1.5E+02 0.0033 35.2 16.3 50 315-364 284-333 (434)
400 PF04949 Transcrip_act: Transc 69.9 1.3E+02 0.0029 30.5 15.3 16 469-484 62-77 (159)
401 COG1382 GimC Prefoldin, chaper 69.6 1.2E+02 0.0025 29.8 14.2 7 319-325 29-35 (119)
402 PF05276 SH3BP5: SH3 domain-bi 68.7 1.9E+02 0.004 31.8 29.0 23 262-284 20-42 (239)
403 PF08826 DMPK_coil: DMPK coile 68.4 71 0.0015 27.7 9.8 21 465-485 31-51 (61)
404 PF06428 Sec2p: GDP/GTP exchan 68.3 39 0.00084 32.1 9.0 58 306-363 4-62 (100)
405 KOG4460 Nuclear pore complex, 68.2 2.8E+02 0.0062 33.7 17.9 138 246-398 585-733 (741)
406 KOG2751 Beclin-like protein [S 68.0 2E+02 0.0043 34.0 16.3 64 298-361 178-241 (447)
407 TIGR02231 conserved hypothetic 67.9 70 0.0015 38.5 13.6 18 742-759 348-365 (525)
408 PRK03947 prefoldin subunit alp 67.8 1.3E+02 0.0028 29.6 14.3 31 242-272 6-36 (140)
409 PF04102 SlyX: SlyX; InterPro 67.6 28 0.00061 30.6 7.5 46 311-356 5-50 (69)
410 PF04899 MbeD_MobD: MbeD/MobD 67.5 87 0.0019 27.9 10.5 57 285-341 10-66 (70)
411 PF03962 Mnd1: Mnd1 family; I 67.4 80 0.0017 33.2 12.2 64 421-485 66-129 (188)
412 PRK14154 heat shock protein Gr 67.3 1.1E+02 0.0025 32.7 13.4 47 244-290 54-100 (208)
413 KOG4677 Golgi integral membran 67.1 2.7E+02 0.0059 33.1 29.0 7 548-554 532-538 (554)
414 PF13863 DUF4200: Domain of un 67.0 1.2E+02 0.0026 29.0 17.4 23 319-341 76-98 (126)
415 PRK00846 hypothetical protein; 66.8 38 0.00083 30.7 8.2 49 294-342 11-59 (77)
416 KOG0288 WD40 repeat protein Ti 66.4 2.7E+02 0.0059 32.8 18.7 19 622-640 216-234 (459)
417 KOG0244 Kinesin-like protein [ 66.2 3.9E+02 0.0084 34.5 27.1 10 122-131 189-198 (913)
418 PRK02119 hypothetical protein; 66.1 45 0.00098 29.8 8.6 38 311-348 10-47 (73)
419 PF10267 Tmemb_cc2: Predicted 66.0 2.1E+02 0.0046 33.6 16.3 28 331-358 212-239 (395)
420 PRK10361 DNA recombination pro 66.0 3E+02 0.0065 33.1 25.9 23 535-557 378-400 (475)
421 PF07851 TMPIT: TMPIT-like pro 65.9 49 0.0011 37.8 10.9 48 312-359 6-53 (330)
422 PF06156 DUF972: Protein of un 65.9 39 0.00085 32.4 8.7 46 292-337 11-56 (107)
423 COG3206 GumC Uncharacterized p 65.8 2.8E+02 0.0061 32.8 27.8 29 323-351 238-266 (458)
424 PF07058 Myosin_HC-like: Myosi 65.7 2.4E+02 0.0052 31.9 17.2 70 244-313 2-83 (351)
425 PRK13729 conjugal transfer pil 65.6 23 0.00049 42.1 8.5 11 679-689 257-267 (475)
426 PF15233 SYCE1: Synaptonemal c 65.1 1.5E+02 0.0033 29.5 14.9 39 240-278 11-49 (134)
427 TIGR00618 sbcc exonuclease Sbc 64.7 4.4E+02 0.0096 34.7 43.9 290 242-533 187-497 (1042)
428 KOG0240 Kinesin (SMY1 subfamil 64.4 3.4E+02 0.0074 33.3 23.2 32 122-154 205-236 (607)
429 PRK04406 hypothetical protein; 64.2 53 0.0011 29.5 8.7 34 325-358 12-45 (75)
430 PRK00295 hypothetical protein; 64.0 49 0.0011 29.1 8.3 36 312-347 7-42 (68)
431 PF04094 DUF390: Protein of un 63.8 3.9E+02 0.0084 33.7 28.0 22 247-268 387-408 (828)
432 PF12795 MscS_porin: Mechanose 63.7 2.2E+02 0.0047 30.7 27.7 21 304-324 39-59 (240)
433 KOG3850 Predicted membrane pro 63.1 3E+02 0.0065 32.1 17.6 77 254-341 265-341 (455)
434 KOG4572 Predicted DNA-binding 62.9 4.2E+02 0.0091 33.8 30.2 9 811-819 1407-1415(1424)
435 TIGR03752 conj_TIGR03752 integ 62.8 86 0.0019 37.4 12.4 18 814-831 427-444 (472)
436 PRK14143 heat shock protein Gr 62.6 1.5E+02 0.0032 32.4 13.4 68 242-312 67-134 (238)
437 PF06428 Sec2p: GDP/GTP exchan 62.6 5.7 0.00012 37.6 2.4 69 272-347 13-81 (100)
438 COG1730 GIM5 Predicted prefold 62.4 1.8E+02 0.004 29.4 14.7 34 242-275 6-39 (145)
439 PRK04325 hypothetical protein; 62.2 55 0.0012 29.3 8.4 36 312-347 11-46 (74)
440 PRK02793 phi X174 lysis protei 62.1 51 0.0011 29.3 8.2 40 311-350 9-48 (72)
441 PF04871 Uso1_p115_C: Uso1 / p 61.9 1.8E+02 0.0038 29.1 15.8 21 430-450 83-103 (136)
442 KOG0972 Huntingtin interacting 61.7 2.8E+02 0.006 31.3 15.3 53 304-356 260-312 (384)
443 PRK00846 hypothetical protein; 61.5 71 0.0015 29.0 8.9 48 308-355 11-58 (77)
444 PF04728 LPP: Lipoprotein leuc 61.5 73 0.0016 27.3 8.4 40 303-342 3-42 (56)
445 PF14931 IFT20: Intraflagellar 61.2 1.7E+02 0.0037 28.7 15.5 23 514-536 95-117 (120)
446 PF12004 DUF3498: Domain of un 61.0 2.7 6E-05 49.9 0.0 22 326-347 410-431 (495)
447 PF04065 Not3: Not1 N-terminal 61.0 2.5E+02 0.0055 30.6 18.0 60 386-445 119-184 (233)
448 PF15272 BBP1_C: Spindle pole 60.9 2.3E+02 0.005 30.1 17.0 114 245-361 19-148 (196)
449 KOG2077 JNK/SAPK-associated pr 60.7 2E+02 0.0043 35.1 14.6 56 457-513 320-375 (832)
450 PRK10476 multidrug resistance 60.3 2.9E+02 0.0064 31.1 16.4 6 629-634 263-268 (346)
451 PRK14151 heat shock protein Gr 60.2 1.7E+02 0.0036 30.6 12.8 49 242-290 20-68 (176)
452 TIGR03794 NHPM_micro_HlyD NHPM 59.3 3.4E+02 0.0074 31.6 20.8 23 292-314 92-114 (421)
453 PRK14139 heat shock protein Gr 59.2 2.1E+02 0.0046 30.2 13.3 50 242-291 32-81 (185)
454 PRK00736 hypothetical protein; 58.9 62 0.0013 28.5 8.0 30 329-358 10-39 (68)
455 KOG2264 Exostosin EXT1L [Signa 58.7 64 0.0014 39.0 10.3 8 643-650 308-315 (907)
456 KOG0247 Kinesin-like protein [ 58.5 3.2E+02 0.0069 34.5 16.3 31 550-580 639-669 (809)
457 PRK08475 F0F1 ATP synthase sub 58.2 2.2E+02 0.0048 29.1 15.1 91 315-405 51-142 (167)
458 PF15456 Uds1: Up-regulated Du 58.0 2E+02 0.0043 28.4 12.5 81 281-363 22-113 (124)
459 PRK13169 DNA replication intia 58.0 64 0.0014 31.2 8.6 55 283-338 3-57 (110)
460 PF06156 DUF972: Protein of un 58.0 58 0.0013 31.3 8.3 51 313-363 4-54 (107)
461 PRK07352 F0F1 ATP synthase sub 57.6 2.3E+02 0.005 29.0 15.6 94 315-408 48-142 (174)
462 PF08647 BRE1: BRE1 E3 ubiquit 57.5 1.7E+02 0.0036 27.4 13.7 95 279-375 1-95 (96)
463 TIGR03321 alt_F1F0_F0_B altern 57.3 2.9E+02 0.0062 30.0 15.6 94 315-408 34-128 (246)
464 PF07464 ApoLp-III: Apolipopho 57.1 1.4E+02 0.003 30.6 11.3 136 279-414 1-150 (155)
465 COG4985 ABC-type phosphate tra 57.0 88 0.0019 34.0 10.1 83 448-539 164-247 (289)
466 PF10205 KLRAQ: Predicted coil 56.7 1.9E+02 0.004 27.7 11.4 70 293-362 2-71 (102)
467 TIGR03545 conserved hypothetic 56.5 1.4E+02 0.003 36.6 13.2 105 262-370 163-269 (555)
468 PF07798 DUF1640: Protein of u 56.3 2.5E+02 0.0054 29.0 22.2 139 255-394 18-158 (177)
469 PF12709 Kinetocho_Slk19: Cent 55.9 1.7E+02 0.0038 27.2 11.7 77 245-334 11-87 (87)
470 PF10805 DUF2730: Protein of u 55.9 80 0.0017 30.1 8.9 61 302-362 34-96 (106)
471 PF15272 BBP1_C: Spindle pole 55.7 2.8E+02 0.0061 29.5 20.4 137 240-383 10-148 (196)
472 COG3206 GumC Uncharacterized p 55.6 4.1E+02 0.0089 31.4 27.9 231 289-525 168-403 (458)
473 PRK13460 F0F1 ATP synthase sub 55.6 2.5E+02 0.0053 28.8 16.6 100 315-414 45-145 (173)
474 TIGR02132 phaR_Bmeg polyhydrox 55.6 2.7E+02 0.0058 29.2 14.8 110 302-421 71-183 (189)
475 PF14362 DUF4407: Domain of un 55.2 3.3E+02 0.0073 30.2 17.3 135 284-438 108-253 (301)
476 PRK14472 F0F1 ATP synthase sub 55.2 2.5E+02 0.0054 28.8 15.6 94 315-408 47-141 (175)
477 PF06632 XRCC4: DNA double-str 55.1 1.9E+02 0.0042 33.2 13.3 84 241-328 136-219 (342)
478 TIGR03545 conserved hypothetic 54.7 3.1E+02 0.0067 33.7 15.7 141 285-425 164-321 (555)
479 KOG4403 Cell surface glycoprot 54.7 4.3E+02 0.0094 31.3 21.7 177 302-480 237-425 (575)
480 PF07851 TMPIT: TMPIT-like pro 54.6 1.3E+02 0.0029 34.4 11.8 89 300-388 1-89 (330)
481 TIGR02894 DNA_bind_RsfA transc 54.5 2.3E+02 0.0051 29.2 12.3 102 251-354 52-155 (161)
482 KOG1655 Protein involved in va 54.4 2.9E+02 0.0063 29.4 13.2 108 450-562 17-137 (218)
483 KOG2150 CCR4-NOT transcription 54.2 5E+02 0.011 31.9 17.9 157 245-425 4-170 (575)
484 COG3352 FlaC Putative archaeal 54.1 1.5E+02 0.0031 30.4 10.6 91 296-386 44-134 (157)
485 PF01920 Prefoldin_2: Prefoldi 53.6 1.8E+02 0.0039 26.7 13.1 79 320-398 1-100 (106)
486 TIGR03794 NHPM_micro_HlyD NHPM 53.6 4.2E+02 0.0091 30.9 20.3 149 299-447 92-250 (421)
487 KOG2391 Vacuolar sorting prote 53.4 1.1E+02 0.0023 35.1 10.6 78 281-358 210-287 (365)
488 PRK13169 DNA replication intia 53.3 74 0.0016 30.8 8.2 50 314-363 5-54 (110)
489 PF05377 FlaC_arch: Flagella a 53.2 45 0.00098 28.4 5.9 40 318-357 1-40 (55)
490 PRK13455 F0F1 ATP synthase sub 53.0 2.8E+02 0.0061 28.7 15.5 94 315-408 56-150 (184)
491 PRK14147 heat shock protein Gr 52.8 2.5E+02 0.0054 29.2 12.6 95 242-339 18-112 (172)
492 PF10805 DUF2730: Protein of u 52.7 1.2E+02 0.0027 28.8 9.6 65 296-360 35-101 (106)
493 PF03999 MAP65_ASE1: Microtubu 52.6 53 0.0011 40.5 9.0 258 240-514 140-410 (619)
494 PF05377 FlaC_arch: Flagella a 52.5 47 0.001 28.3 5.9 40 304-343 1-40 (55)
495 PRK12705 hypothetical protein; 52.4 5.1E+02 0.011 31.5 22.7 137 272-412 39-181 (508)
496 KOG4005 Transcription factor X 52.4 1.8E+02 0.004 31.7 11.6 89 252-341 55-149 (292)
497 COG5283 Phage-related tail pro 52.3 7.2E+02 0.016 33.2 33.9 273 262-555 21-314 (1213)
498 PRK15422 septal ring assembly 52.3 1.9E+02 0.0041 26.5 10.1 64 298-361 6-69 (79)
499 PF07445 priB_priC: Primosomal 52.2 2.9E+02 0.0063 28.6 15.6 152 319-473 1-173 (173)
500 KOG3771 Amphiphysin [Intracell 52.1 4.9E+02 0.011 31.2 22.4 212 342-562 5-229 (460)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.92 E-value=2.5e-22 Score=254.73 Aligned_cols=440 Identities=20% Similarity=0.228 Sum_probs=222.3
Q ss_pred ceEEEEeCCCC-ceeecCccccCCCCccccCCCCEEE----Ec-cCCCCCccEEEEEcccccCCCcc------ccccccc
Q 002652 148 SSVCLKDTSTN-GTYVNCERFKKNSSEVNIDHGDIIS----FA-APPQHDLAFAFVFRDVSRSTPTM------EGAAAKR 215 (896)
Q Consensus 148 ~~~~L~D~StN-GTfVNg~ri~kng~~~~L~~GDvIs----La-~dp~~~~af~FVF~dtlv~~~~e------~g~~~~e 215 (896)
|+-||+....+ .|||+..+|............+.|. |. ++|.|.++|.|||++|++|++++ +......
T Consensus 557 ~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~~ 636 (1163)
T COG1196 557 AIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKY 636 (1163)
T ss_pred HHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCCc
Confidence 56788887666 9999999998521111111344443 33 57788889999999999999998 2221245
Q ss_pred ceeeecccccccccccccCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002652 216 KAEEYVSDNKRLKGIGICSPDGPLSL----DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS 291 (896)
Q Consensus 216 KSgamtGgs~~~sG~~~sa~~~~~~l----dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~ 291 (896)
|.+|++|+.+.++|.+.+....+.+. .++..|..++..+..++......+..+...+..+... +.+++..+
T Consensus 637 riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~- 711 (1163)
T COG1196 637 RIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL----LEELRRQL- 711 (1163)
T ss_pred eEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-
Confidence 66777777777777766441111111 1344556666666666666666666666655444444 33333333
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002652 292 ISYLHQLKVLRDMLD-------AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 364 (896)
Q Consensus 292 kklE~QLeELq~kLe-------e~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeE 364 (896)
..+..++..+...+. .....+..+...+..+..++..++.++..++..+..+...+..++..+.++...+...
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 791 (1163)
T COG1196 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQAL 791 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222333333333 2233333333333333333333333444444444444444433333333333211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---
Q 002652 365 RNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAE--------------KQSSLQVE--- 427 (896)
Q Consensus 365 r~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~E--------------Kklr~elE--- 427 (896)
. ..+..++..+..++..+..+..++..|..+.. .....++.+...+..+.+.. ..+..+++
T Consensus 792 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 869 (1163)
T COG1196 792 Q-EELEELEEELEEAERRLDALERELESLEQRRE-RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869 (1163)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 12222222333333333333333333333321 22222222222222222111 12222222
Q ss_pred ----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Q 002652 428 ----SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAARE--------VAWA 495 (896)
Q Consensus 428 ----dLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~E--------e~~~ 495 (896)
.+...+...+.....+++.++.+...+.+.+.....+...+..+......+...+........+ .+..
T Consensus 870 ~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1163)
T COG1196 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHH
Confidence 2222222222222222333333333333333333222333332222333333222222111111 4566
Q ss_pred HHHHHHHHHH-------HHhhhHHHHHHH----------HHHHHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHHHH
Q 002652 496 KVSGLELDIL-------AATRDLDFERRR----------LKAARERIMLRETQL-----RAFYSTTEEISVLFARQQEQL 553 (896)
Q Consensus 496 ki~~LE~Eie-------ka~reLE~Ek~r----------Lq~~rerL~~~eqq~-----ka~iek~EEiee~fkk~~~qL 553 (896)
.+..|+.++. .|+.+|+....| +..++..|+...+.+ ..|+++|..|+.+|..+|+.|
T Consensus 950 ~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 950 EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666654 356666666665 333444555443333 378899999999999999999
Q ss_pred HH---HhhhhhhhhhhcccccccccCCCCC---CCcccccCcccccc
Q 002652 554 KA---MQKTLEDEENYENTSVDIDLCVPDG---ENSRTIVGEKLPNG 594 (896)
Q Consensus 554 ~~---lq~~LEdEek~~s~~leld~~p~~k---rleamSGGEKs~~~ 594 (896)
-. ..+.|.++++||++++++-++|.+| +|..|||||||.+.
T Consensus 1030 ~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtA 1076 (1163)
T COG1196 1030 FGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTA 1076 (1163)
T ss_pred CCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHH
Confidence 66 4577788899999999999999999 89999999998754
No 2
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.1e-20 Score=217.26 Aligned_cols=390 Identities=16% Similarity=0.179 Sum_probs=238.0
Q ss_pred CCCceeecCccccCCC-Cccc------cCCCCE---EEEc-cCCCCCccEEEEEcccccCCCcc------ccccccccee
Q 002652 156 STNGTYVNCERFKKNS-SEVN------IDHGDI---ISFA-APPQHDLAFAFVFRDVSRSTPTM------EGAAAKRKAE 218 (896)
Q Consensus 156 StNGTfVNg~ri~kng-~~~~------L~~GDv---IsLa-~dp~~~~af~FVF~dtlv~~~~e------~g~~~~eKSg 218 (896)
..+-|.||.++|..+. .+.. +-++.+ |+|. |++...++|.||||.++||++++ |++.++.||+
T Consensus 569 ~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsV 648 (1174)
T KOG0933|consen 569 RRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSV 648 (1174)
T ss_pred cceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhccccccccee
Confidence 3456777777776521 1111 213333 4544 67777789999999999999998 9999999999
Q ss_pred eecccccccccccc--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 219 EYVSDNKRLKGIGI--CSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLH 296 (896)
Q Consensus 219 amtGgs~~~sG~~~--sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~ 296 (896)
|+.||+|+|+|+++ +.+.+...|.+++.|... +.+++.....++.++.++..+... ..+. +.+..
T Consensus 649 Tl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~----~~~~~~~q~el~~le~eL~~le~~--------~~kf-~~l~~ 715 (1174)
T KOG0933|consen 649 TLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQA----QKELRAIQKELEALERELKSLEAQ--------SQKF-RDLKQ 715 (1174)
T ss_pred eecCceeCCCCcccCCCCCCcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHH
Confidence 99999999999999 334443346666554443 333333344444444433222111 1112 55666
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002652 297 QLKVLRDMLDAKQKELAE-----ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (896)
Q Consensus 297 QLeELq~kLee~ekeL~e-----l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE 371 (896)
||.-..+.+...++.+.. +.+.+.++..++.++..+|.+....+......+..+++.+.+.+ .++..++.+
T Consensus 716 ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~----~~re~rlkd 791 (1174)
T KOG0933|consen 716 QLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK----ANRERRLKD 791 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hhhHhHHHH
Confidence 666666777777766663 77888888888888888888888888888888888888888877 566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 002652 372 RENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKL--------------QIAEKQSSLQVESLKLKLDETR 437 (896)
Q Consensus 372 LEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KL--------------qE~EKklr~elEdLq~eLE~lr 437 (896)
+++.+..++..++.-..++......+. ...-..++++.++... ......+...+..+..++..++
T Consensus 792 l~keik~~k~~~e~~~~~~ek~~~e~e-~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~ 870 (1174)
T KOG0933|consen 792 LEKEIKTAKQRAEESSKELEKRENEYE-RLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQ 870 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 655544444433322221111111111 1111222222222222 2222222233334444444455
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH
Q 002652 438 ERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDIL----------AA 507 (896)
Q Consensus 438 a~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie----------ka 507 (896)
+.+....++++..+..|...-........+....+.++++|.+++.++. .....+...++.|..+++ +-
T Consensus 871 ~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~-~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~ 949 (1174)
T KOG0933|consen 871 AELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLE-SEKANARKEVEKLLKKHEWIGDEKRLFGKK 949 (1174)
T ss_pred HHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhh-hhHHHHHHHHHHHHHhccchhHHHHhhcCC
Confidence 5555555555555555544444444456777788888999999999998 888888888888888775 23
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhccccc
Q 002652 508 TRDLDFERRRLKAARERIMLRETQLR-----------AFYSTTEEISVLFARQQEQLKAMQKTL-EDEENYENTSV 571 (896)
Q Consensus 508 ~reLE~Ek~rLq~~rerL~~~eqq~k-----------a~iek~EEiee~fkk~~~qL~~lq~~L-EdEek~~s~~l 571 (896)
...|||+......++++|..+...+. .++++.| ..+..|+.+..++ .|+.++..++.
T Consensus 950 gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E-------~~~~~lk~k~~~Ie~Dk~kI~ktI~ 1018 (1174)
T KOG0933|consen 950 GTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAE-------EKEAALKTKKEIIEKDKSKIKKTIE 1018 (1174)
T ss_pred CCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88999999988888887776644332 3445555 4555555555555 45555554444
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.87 E-value=1.2e-18 Score=220.53 Aligned_cols=442 Identities=16% Similarity=0.212 Sum_probs=202.3
Q ss_pred ceEEEEeCCCC-ceeecCccccCCCCcccc-C-CCCE---EEEc-cCCCCCccEEEEEcccccCCCccccccc--cccee
Q 002652 148 SSVCLKDTSTN-GTYVNCERFKKNSSEVNI-D-HGDI---ISFA-APPQHDLAFAFVFRDVSRSTPTMEGAAA--KRKAE 218 (896)
Q Consensus 148 ~~~~L~D~StN-GTfVNg~ri~kng~~~~L-~-~GDv---IsLa-~dp~~~~af~FVF~dtlv~~~~e~g~~~--~eKSg 218 (896)
++-||+....+ .||||...|.+......+ . +|.+ +.+. +++.+.++|.|+|+.+++|++++.+..+ ..+.|
T Consensus 563 ~i~~l~~~~~gr~tflpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~~~~~~~v 642 (1164)
T TIGR02169 563 AIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMV 642 (1164)
T ss_pred HHHHHHhcCCCCeeeccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHHhcCCcEE
Confidence 34566665544 899998877541000111 1 2222 1122 4566667899999999999998732111 33668
Q ss_pred eecccccccccccccCCCC--C-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002652 219 EYVSDNKRLKGIGICSPDG--P-LS-----LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV 290 (896)
Q Consensus 219 amtGgs~~~sG~~~sa~~~--~-~~-----ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l 290 (896)
|++|+.+.++|.+++.... . .. -.++..|..++..|..++..+...+..++.++..+... +..+...+
T Consensus 643 TldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~----~~~~~~~~ 718 (1164)
T TIGR02169 643 TLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE----LSDASRKI 718 (1164)
T ss_pred EeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 8888888888877643211 1 11 13455666666666666666655555555555444333 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHH
Q 002652 291 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE----ERN 366 (896)
Q Consensus 291 ~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe----Er~ 366 (896)
..+..++..+...+.....++..+...+..++.++..+...+..+...+..+...+..++..+..++..+.. ...
T Consensus 719 -~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~~~~~~ 797 (1164)
T TIGR02169 719 -GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797 (1164)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333333333333333333333333333333333333333333333333333333333333222210 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 002652 367 LRRVDRENAEADLKAAVQKSQLETQEK-------LKRLSDAASRRELEQQEV--------------INKLQIAEKQSSLQ 425 (896)
Q Consensus 367 ~~~EELEe~~~eLk~qIqkl~~El~ee-------rkk~eee~~~~ieElee~--------------l~KLqE~EKklr~e 425 (896)
..+..++..+..++..+..+..++... ...+. .....+..+... +..++.....+...
T Consensus 798 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~-~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 876 (1164)
T TIGR02169 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ-ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222222222222221111110 00000 011111111111 11111111122222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQ------------AAREVA 493 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~------------~~~Ee~ 493 (896)
+..+..+++.+...+..+..++..+...+...+.....+...+..+...+..+..++..+.. ...+.+
T Consensus 877 ~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 956 (1164)
T TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHH
Confidence 22233333333333333333333333333333222222222223222222222222222110 012344
Q ss_pred HHHHHHHHHHHH-------HHhhhHHHHHHHHHH----------HHHHHHHHHHHH-----HHhhhhHHHHHHHHHHHHH
Q 002652 494 WAKVSGLELDIL-------AATRDLDFERRRLKA----------ARERIMLRETQL-----RAFYSTTEEISVLFARQQE 551 (896)
Q Consensus 494 ~~ki~~LE~Eie-------ka~reLE~Ek~rLq~----------~rerL~~~eqq~-----ka~iek~EEiee~fkk~~~ 551 (896)
...+..|..+|. +|+.+|+....++.. .+..|....+.+ ..|+.+|+.|+.+|..+|.
T Consensus 957 ~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~ 1036 (1164)
T TIGR02169 957 QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFA 1036 (1164)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 255666666555322 222333332222 4778999999999999999
Q ss_pred HHHHHh--hhhhhhhhhcccccccccCCCCC---CCcccccCccccccc
Q 002652 552 QLKAMQ--KTLEDEENYENTSVDIDLCVPDG---ENSRTIVGEKLPNGH 595 (896)
Q Consensus 552 qL~~lq--~~LEdEek~~s~~leld~~p~~k---rleamSGGEKs~~~~ 595 (896)
.|..+. +.|.++.++|..++.+.++|.++ ++..||||||+.+..
T Consensus 1037 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~l 1085 (1164)
T TIGR02169 1037 ELSGGTGELILENPDDPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTAL 1085 (1164)
T ss_pred HHhCCeEEEEecCCCCcccCCeEEEEEcCCCCCCcchhcCcchHHHHHH
Confidence 998555 44577788999999999999888 788999999987665
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.83 E-value=1.4e-16 Score=203.58 Aligned_cols=288 Identities=23% Similarity=0.303 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--
Q 002652 291 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR-- 368 (896)
Q Consensus 291 ~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~-- 368 (896)
++.++.++.+++.++++..+.+.++..+..++.+++.++..++++.+..+..+.+.+..+..+|++++++|+++.+.+
T Consensus 1240 ~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~ 1319 (1930)
T KOG0161|consen 1240 DKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSA 1319 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999977442
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 002652 369 ------------------RVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIA------------ 418 (896)
Q Consensus 369 ------------------~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~------------ 418 (896)
+++..+.+.+|..++++++.++++|++++........+++++...++...
T Consensus 1320 l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~ 1399 (1930)
T KOG0161|consen 1320 LENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAAN 1399 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22233447778889999999999999999988888788888776665211
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 419 ---------EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAA 489 (896)
Q Consensus 419 ---------EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~ 489 (896)
..++..+++++..+++..++.+..++++++.|++.|++|+.....+..+++..+.+.+.+.+++..+. ..
T Consensus 1400 ~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~-~~ 1478 (1930)
T KOG0161|consen 1400 AKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLK-NA 1478 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Confidence 12556778899999999999999999999999999999999999999999999999999999999988 77
Q ss_pred HHHHHHHHHHHHH------------------------HHHHHhhhHHHHHHHHHHHHH--------------HHHHHHHH
Q 002652 490 REVAWAKVSGLEL------------------------DILAATRDLDFERRRLKAARE--------------RIMLRETQ 531 (896)
Q Consensus 490 ~Ee~~~ki~~LE~------------------------Eieka~reLE~Ek~rLq~~re--------------rL~~~eqq 531 (896)
++++...++.|.. |+++..+.++.++.+|+.+.+ |+++..++
T Consensus 1479 lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1479 LEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 7777777777652 344568888888888777644 55555677
Q ss_pred HHHhh-----hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccc------cccCCCC
Q 002652 532 LRAFY-----STTEEISVLFARQQEQLKAMQKTLEDEENYENTSVD------IDLCVPD 579 (896)
Q Consensus 532 ~ka~i-----ek~EEiee~fkk~~~qL~~lq~~LEdEek~~s~~le------ld~~p~~ 579 (896)
++.++ ++++++++.+++++..|.+|+..|+++.+.++.++. .|+++++
T Consensus 1559 ~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE 1617 (1930)
T KOG0161|consen 1559 LRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELE 1617 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHH
Confidence 76665 899999999999999999999999999999999885 4555544
No 5
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=7.2e-17 Score=193.69 Aligned_cols=164 Identities=16% Similarity=0.272 Sum_probs=99.0
Q ss_pred eEEEEeCCCC-ceeecCcccc--CCCCccccCCCCE---EEEc--cCCCCCccEEEEEcccccCCCcc------------
Q 002652 149 SVCLKDTSTN-GTYVNCERFK--KNSSEVNIDHGDI---ISFA--APPQHDLAFAFVFRDVSRSTPTM------------ 208 (896)
Q Consensus 149 ~~~L~D~StN-GTfVNg~ri~--kng~~~~L~~GDv---IsLa--~dp~~~~af~FVF~dtlv~~~~e------------ 208 (896)
|-||+-+..+ .|||...+|. ...-..+..+-.+ ++|. .+|.+..+|.|+.++|+||++++
T Consensus 658 I~fl~~~nLgraTFi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr 737 (1293)
T KOG0996|consen 658 INFLKKNNLGRATFIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRR 737 (1293)
T ss_pred HHHHHHcCCCceeEEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCc
Confidence 3455555555 7888887776 2111111122222 3333 24677889999999999999998
Q ss_pred ------cccccccceeeecccccccccc--cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002652 209 ------EGAAAKRKAEEYVSDNKRLKGI--GICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHE 280 (896)
Q Consensus 209 ------~g~~~~eKSgamtGgs~~~sG~--~~sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E 280 (896)
+|.+ .++||||+||-....|. +.+....+++...|..|+++...+..........+-.+...+..++.+
T Consensus 738 ~RVvTL~G~l-Ie~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~-- 814 (1293)
T KOG0996|consen 738 WRVVTLDGSL-IEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRER-- 814 (1293)
T ss_pred eEEEEeccee-ecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 5555 89999999998777553 222223455678888888888888877777766665555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 281 KEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 318 (896)
Q Consensus 281 ~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k 318 (896)
..++.-.+ .++...++.+...++.+++.+.++++.
T Consensus 815 --~~~l~~~l-~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 815 --IPELENRL-EKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred --hHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 334444444444444444444443333
No 6
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=9.7e-15 Score=174.76 Aligned_cols=115 Identities=13% Similarity=0.168 Sum_probs=83.1
Q ss_pred CceEEEEeCCCC-ceeecCccccCCCCcccc-CCCCEEEEc-----cCCCCCccEEEEEcccccCCCcc------ccccc
Q 002652 147 CSSVCLKDTSTN-GTYVNCERFKKNSSEVNI-DHGDIISFA-----APPQHDLAFAFVFRDVSRSTPTM------EGAAA 213 (896)
Q Consensus 147 ~~~~~L~D~StN-GTfVNg~ri~kng~~~~L-~~GDvIsLa-----~dp~~~~af~FVF~dtlv~~~~e------~g~~~ 213 (896)
.||.||++.+.. -||||...|.-+.....| .+|++ .|+ |+|.+..++.|++|+++||++++ +|--+
T Consensus 544 ~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~-rlv~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~ 622 (1141)
T KOG0018|consen 544 DCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGV-RLVIDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEI 622 (1141)
T ss_pred HHHHHHHHhccCCccccchhhhhcCcccccccCcCCe-EEEEEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccc
Confidence 368899998877 999999887542222344 56774 333 46777889999999999999998 55444
Q ss_pred ccceeeecccccccccccccCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHH
Q 002652 214 KRKAEEYVSDNKRLKGIGICSPDGPLSLDD--FRSLQRSNTELRKQLESQVL 263 (896)
Q Consensus 214 ~eKSgamtGgs~~~sG~~~sa~~~~~~ldk--vr~Le~e~~eL~~qlee~~~ 263 (896)
+-|.+||+|-.+-.+|++++...++. ||+ |..|-....+|..+|.++..
T Consensus 623 r~k~valdGtl~~ksGlmsGG~s~~~-wdek~~~~L~~~k~rl~eel~ei~~ 673 (1141)
T KOG0018|consen 623 RFKVVALDGTLIHKSGLMSGGSSGAK-WDEKEVDQLKEKKERLLEELKEIQK 673 (1141)
T ss_pred cceEEEeeeeEEeccceecCCccCCC-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999886666644 654 45566655666655555544
No 7
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.73 E-value=2.9e-19 Score=219.75 Aligned_cols=325 Identities=21% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLE 323 (896)
|..|.+....|.+....+...++.+...+..+... +..+... +++++.+|.+++.++++.++.+.++...+.+|+
T Consensus 140 le~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~----k~~~Ek~-~K~lE~qL~El~~klee~er~~~el~~~k~kL~ 214 (859)
T PF01576_consen 140 LEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKA----KQEAEKK-RKQLEAQLNELQAKLEESERQRNELTEQKAKLQ 214 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333222 2333222 489999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------------HHHHHHHHHHHHHHH
Q 002652 324 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR--------------------RVDRENAEADLKAAV 383 (896)
Q Consensus 324 sEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~--------------------~EELEe~~~eLk~qI 383 (896)
.++.+|..+|+..+..+..+.+.+..++.++.+++++|+++...+ +++.......+..+|
T Consensus 215 ~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~ql 294 (859)
T PF01576_consen 215 SENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQL 294 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999987442 122223467777899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002652 384 QKSQLETQEKLKRLSDAASRRELEQQEVINKLQI---------------------AEKQSSLQVESLKLKLDETRERLVT 442 (896)
Q Consensus 384 qkl~~El~eerkk~eee~~~~ieElee~l~KLqE---------------------~EKklr~elEdLq~eLE~lra~l~~ 442 (896)
.+++.++.+|++++..+.....++++++.+++.. ..+++..+++|++.+|+..++.+..
T Consensus 295 sk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~ 374 (859)
T PF01576_consen 295 SKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAE 374 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888878888776666521 1236777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 002652 443 SDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLEL-------------------- 502 (896)
Q Consensus 443 lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~-------------------- 502 (896)
++++++.|++.+.+|+..+..+...++.++.+.+.+..++..++ ..++++...+..|+.
T Consensus 375 LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk-~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~ 453 (859)
T PF01576_consen 375 LEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLK-NELEELQEQLEELERENKQLQDELEDLTSQLDDAG 453 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Confidence 99999999999999999999998888888888888888888888 777777777766663
Q ss_pred ----HHHHHhhhHHHHHHHHHHH--------------HHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHhhh
Q 002652 503 ----DILAATRDLDFERRRLKAA--------------RERIMLRETQLRAFY-----STTEEISVLFARQQEQLKAMQKT 559 (896)
Q Consensus 503 ----Eieka~reLE~Ek~rLq~~--------------rerL~~~eqq~ka~i-----ek~EEiee~fkk~~~qL~~lq~~ 559 (896)
+|+++++.|+.+..+++.+ +.||++.+++++++| ++.+++++.|++++++|.+|+..
T Consensus 454 k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~ 533 (859)
T PF01576_consen 454 KSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAE 533 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhH
Confidence 3345788888888876655 338888888888777 88999999999999999999999
Q ss_pred hhhhhhhcccccccc
Q 002652 560 LEDEENYENTSVDID 574 (896)
Q Consensus 560 LEdEek~~s~~leld 574 (896)
||.+.+.++.++.+.
T Consensus 534 LE~E~k~r~~~~r~k 548 (859)
T PF01576_consen 534 LEEERKERAEALREK 548 (859)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888643
No 8
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=7.4e-13 Score=156.94 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=67.6
Q ss_pred ceeecCccccCCCCccccCCCCEEEEc----cCCCCCccEEEEEcccccCCCcc----------------ccccccccee
Q 002652 159 GTYVNCERFKKNSSEVNIDHGDIISFA----APPQHDLAFAFVFRDVSRSTPTM----------------EGAAAKRKAE 218 (896)
Q Consensus 159 GTfVNg~ri~kng~~~~L~~GDvIsLa----~dp~~~~af~FVF~dtlv~~~~e----------------~g~~~~eKSg 218 (896)
-||+|.+||.. .....-.+.|.|-|. |+|.|.++|.-||+.|.+|.+++ +|+. +-|-|
T Consensus 576 VTF~PLNrl~~-r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDq-vskkG 653 (1200)
T KOG0964|consen 576 VTFMPLNRLKA-RDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQ-VSKKG 653 (1200)
T ss_pred eEEeecccCch-hhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccce-ecccC
Confidence 59999999987 332233788887776 57999999999999999999998 4555 55566
Q ss_pred eecccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002652 219 EYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENR 273 (896)
Q Consensus 219 amtGgs~~~sG~~~sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~ 273 (896)
+||||.++.+....- .+..|...+.+..+|.+.|...+..+.....++.
T Consensus 654 ~lTgGy~D~krsrLe------~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~ 702 (1200)
T KOG0964|consen 654 VLTGGYEDQKRSRLE------LLKNVNESRSELKELQESLDEVRNEIEDIDQKID 702 (1200)
T ss_pred CccccchhhhhhHHH------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655332110 1233444444445555444444444444444433
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.62 E-value=3.3e-12 Score=161.92 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH-H----h--hhhhhhhhhcccccccccCCCCC---CCcccccCccccccc
Q 002652 536 YSTTEEISVLFARQQEQLKA-M----Q--KTLEDEENYENTSVDIDLCVPDG---ENSRTIVGEKLPNGH 595 (896)
Q Consensus 536 iek~EEiee~fkk~~~qL~~-l----q--~~LEdEek~~s~~leld~~p~~k---rleamSGGEKs~~~~ 595 (896)
.++|..++++|...|..|=. | . +.|+|+.+||..++.+.+.|.++ .+..||||+|..+..
T Consensus 1031 ~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l 1100 (1179)
T TIGR02168 1031 RERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQPPGKKNQNLSLLSGGEKALTAL 1100 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeCCCCccccccccCccHHHHHHH
Confidence 57777777777777777632 2 1 56678889999999999999887 889999999876655
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=99.52 E-value=1.6e-10 Score=127.41 Aligned_cols=270 Identities=21% Similarity=0.286 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS------ISYLHQLKVLRDMLDAKQKELAE 314 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~------kklE~QLeELq~kLee~ekeL~e 314 (896)
|++|+.|+.+|..|..++..+.... ......+...|+.++.+++..+. .+++.++..++..+++.+..+..
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~---~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKK---GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcc---cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 7999999999999999988887763 45556677888888888888873 57888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRE---------NAEADLKAAVQK 385 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELE---------e~~~eLk~qIqk 385 (896)
.......++.++..+...+........+++..+..|+.+|.-++...+++...+...+. ....+|...|..
T Consensus 94 e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~e 173 (312)
T PF00038_consen 94 ELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALRE 173 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhh
Confidence 88888888888888888888888888888888888888888777766666543321110 012223333333
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002652 386 SQL-----------ETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 454 (896)
Q Consensus 386 l~~-----------El~eerkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~L 454 (896)
++. ++..|-+....+...........+..+++..+.++..+..|..+++.++.....|++.+..++..+
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 332 233333323323333333344445555666677778888888888888888888888888888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002652 455 CKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRR 517 (896)
Q Consensus 455 eEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~r 517 (896)
......+ +..+..++.++.+++.++....+.+.+.+..++ +|+.||..|++.|+.+..|
T Consensus 254 ~~~~~~~---~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~-~Ld~EIatYR~LLEgEE~R 312 (312)
T PF00038_consen 254 DEEREEY---QAEIAELEEELAELREEMARQLREYQELLDVKL-ALDAEIATYRKLLEGEESR 312 (312)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTCHC--
T ss_pred HHHHHHH---HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCcccC
Confidence 7775555 888999999999999999998845556555566 9999999999999987543
No 11
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=99.47 E-value=2.6e-11 Score=140.30 Aligned_cols=270 Identities=20% Similarity=0.221 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS-------------ISYLHQLKVLRDMLD 306 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~-------------kklE~QLeELq~kLe 306 (896)
-|++||+|+.+|..|..++..++.. +..+...++..|+.|+..++..+. ++++.++.++..+++
T Consensus 54 YIekVR~LEaqN~~L~~di~~lr~~---~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 54 YIEKVRFLEAQNRKLEHDINLLRGV---VGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4899999999999999999988777 666777788888888887776662 478888888888888
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002652 307 AKQKELAE-------ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADL 379 (896)
Q Consensus 307 e~ekeL~e-------l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eL 379 (896)
++++.+.. ....+..++.++.-+++++..++..+..|.++..+|..+|..+..+|+.+.-.+. ++++++..|
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~-d~~n~~q~L 209 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV-DLQNRVQTL 209 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHhHHHHH
Confidence 88777764 4555666666777777777777777777777777777777777777777763221 111111111
Q ss_pred HHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-----------
Q 002652 380 KAAVQK-------------------------------SQLETQEKLKRLSDAASRRELEQQE-VINKLQ----------- 416 (896)
Q Consensus 380 k~qIqk-------------------------------l~~El~eerkk~eee~~~~ieElee-~l~KLq----------- 416 (896)
...|.- |...+.+.+..|+......-++++. +..|++
T Consensus 210 leel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~ 289 (546)
T KOG0977|consen 210 LEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANV 289 (546)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccc
Confidence 111111 1111222222333211122222222 233332
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 417 ------IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAR 490 (896)
Q Consensus 417 ------E~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~ 490 (896)
+..++++..+..|+.+|.++......|++++..|.-+|++.+..+ ++.+...+.++.+|+.++..+. .++
T Consensus 290 ~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~---e~~L~~kd~~i~~mReec~~l~-~El 365 (546)
T KOG0977|consen 290 EQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF---EQALNDKDAEIAKMREECQQLS-VEL 365 (546)
T ss_pred hhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh---hhhhhhHHHHHHHHHHHHHHHH-HHH
Confidence 333455555666666666666666666777777777777777766 7778999999999999999988 655
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002652 491 EVAWAKVSGLELDILAATRDLDFERRR 517 (896)
Q Consensus 491 Ee~~~ki~~LE~Eieka~reLE~Ek~r 517 (896)
+.+-+..-.|+.||..|++.|+.+..+
T Consensus 366 q~LlD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 366 QKLLDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred HHhhchHhHHHhHHHHHHHHhccccCC
Confidence 555555558999999999888886443
No 12
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.47 E-value=9.9e-14 Score=119.04 Aligned_cols=67 Identities=33% Similarity=0.488 Sum_probs=59.0
Q ss_pred eEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCccccCCCCEEE
Q 002652 105 HCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNIDHGDIIS 183 (896)
Q Consensus 105 ~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~ri~kng~~~~L~~GDvIs 183 (896)
++|||++.| +++|+++.||+.||.|++... ..|||+| .|+|||||||.+|.+ +.+..|.+||+|.
T Consensus 1 ~~iGR~~~~-di~l~~~~iSr~Ha~i~~~~~------------~~~~i~d~~s~ngt~vng~~l~~-~~~~~L~~gd~i~ 66 (68)
T PF00498_consen 1 VTIGRSPDC-DIVLPDPSISRRHARISFDDD------------GQFYIEDLGSTNGTFVNGQRLGP-GEPVPLKDGDIIR 66 (68)
T ss_dssp EEEESSTTS-SEEETSTTSSTTSEEEEEETT------------EEEEEEESSSSS-EEETTEEESS-TSEEEE-TTEEEE
T ss_pred CEEcCCCCC-CEEECCHheeeeeeEEEEece------------eeEEEEeCCCCCcEEECCEEcCC-CCEEECCCCCEEE
Confidence 689999887 999999999999999998753 2599999 589999999999999 7889999999999
Q ss_pred Ec
Q 002652 184 FA 185 (896)
Q Consensus 184 La 185 (896)
||
T Consensus 67 ~G 68 (68)
T PF00498_consen 67 FG 68 (68)
T ss_dssp ET
T ss_pred cC
Confidence 86
No 13
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.25 E-value=6.3e-11 Score=107.96 Aligned_cols=91 Identities=31% Similarity=0.412 Sum_probs=73.5
Q ss_pred eEEEEeecccccccCcceeEEecC-CceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CC
Q 002652 79 WGVLTAISNNARKRHQGINILLTA-DEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TS 156 (896)
Q Consensus 79 WG~L~~i~~~~~~r~~g~~i~L~~-~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~S 156 (896)
|..|.++... ..+..+.|.. ..++|||...|++++|.++.||+.||.|++... ..+|+.+ .|
T Consensus 1 ~~~L~~~~~~----~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~------------~~~~~~~~~s 64 (102)
T cd00060 1 VPRLVVLSGD----ASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGD------------GGVVLIDLGS 64 (102)
T ss_pred CeEEEEecCC----CceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCC------------CCEEEEECCC
Confidence 4456555442 1345788888 899999999988999999999999999998752 0256666 79
Q ss_pred CCceeecCccccCCCCccccCCCCEEEEcc
Q 002652 157 TNGTYVNCERFKKNSSEVNIDHGDIISFAA 186 (896)
Q Consensus 157 tNGTfVNg~ri~kng~~~~L~~GDvIsLa~ 186 (896)
.||||||+.++.+ +....|.+||.|.|+.
T Consensus 65 ~~g~~vn~~~~~~-~~~~~l~~gd~i~ig~ 93 (102)
T cd00060 65 TNGTFVNGQRVSP-GEPVRLRDGDVIRLGN 93 (102)
T ss_pred CCCeEECCEECCC-CCcEECCCCCEEEECC
Confidence 9999999999997 5678999999999995
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.24 E-value=2e-07 Score=121.19 Aligned_cols=271 Identities=19% Similarity=0.266 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---
Q 002652 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR--- 368 (896)
Q Consensus 292 kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~--- 368 (896)
..++..+.++..+++..+.....++.++.+++.++.++...+...+..+.++..++..++..+..|+..+..-.+..
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL 983 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKL 983 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888888888888888888888888888888888888888888888776665511110
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHH
Q 002652 369 ---RVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINK-------LQIAEKQSSLQ-------VESLKL 431 (896)
Q Consensus 369 ---~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~K-------LqE~EKklr~e-------lEdLq~ 431 (896)
..+++++..+|...++....++....+ ........+.+++..+++ ++...+++..+ +..++.
T Consensus 984 ~kekk~lEe~~~~l~~~l~~~eek~~~l~k-~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~ 1062 (1930)
T KOG0161|consen 984 SKEKKELEERIRELQDDLQAEEEKAKSLNK-AKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKK 1062 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111333333333333322222211111 110111122222211111 11111222222 344566
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002652 432 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDL 511 (896)
Q Consensus 432 eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reL 511 (896)
..+++...+...+-++..+..++++++..+.++++.+.+++.++.+|..+++..+ ..+.+++.....|..+++....+|
T Consensus 1063 ~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er-~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1063 QKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER-ASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777778888888899999999999999999999999999999999998 899999998888888888777777
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002652 512 DFERRRLKAARE-------RIMLRETQL-RAFYSTTEEISVLFARQQEQLKAMQKTLEDEE 564 (896)
Q Consensus 512 E~Ek~rLq~~re-------rL~~~eqq~-ka~iek~EEiee~fkk~~~qL~~lq~~LEdEe 564 (896)
+..........+ .+...-..+ ...+.....+...++.+...|..+..+|++..
T Consensus 1142 ee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~ 1202 (1930)
T KOG0161|consen 1142 EEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQ 1202 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766443222211 111111111 23335555556666666666666666655533
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.23 E-value=2.5e-07 Score=117.89 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHE---KEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E---~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~ 320 (896)
+..|..++..|+.++..+...+..++..+..+...+. ..+..+...+ ..+..++..+..++..++..+..+...+.
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 750 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL-EELSRQISALRKDLARLEAEVEQLEERIA 750 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444433333211 1122222222 22333334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 321 EQKHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (896)
Q Consensus 321 kLEsEleEL~eqLee~e~~~~eLekeik~LE 351 (896)
.++.++..+..++..+...+..+...+..++
T Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 781 (1179)
T TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAE 781 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333333333333
No 16
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.22 E-value=4.5e-11 Score=136.21 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=69.5
Q ss_pred ceeEEecCCceEecCCCCCCceecCCCc--ccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeec--CccccCC
Q 002652 95 GINILLTADEHCIGRLVDDAHFQIDSNA--VSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVN--CERFKKN 170 (896)
Q Consensus 95 g~~i~L~~~~~~IGR~~~~~di~i~~~~--ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVN--g~ri~kn 170 (896)
+..+.+....++|||.+.| +++|+++. ||+.||+|++... .|||+|.|+|||||| |.+|.+
T Consensus 16 ~~~~~f~~~~~~IGR~~~~-d~~l~d~~~~VS~~Ha~I~~~~g-------------~~~l~DlStNGT~VN~sg~~l~~- 80 (396)
T TIGR03354 16 AAQKTFGTNGGTIGRSEDC-DWVLPDPERHVSGRHARIRYRDG-------------AYLLTDLSTNGVFLNGSGSPLGR- 80 (396)
T ss_pred ceEEEECCCCEEEecCCCC-CEEeCCCCCCcchhhcEEEEECC-------------EEEEEECCCCCeEECCCCCCCCC-
Confidence 3478888899999999998 99999998 9999999998753 499999999999999 899998
Q ss_pred CCccccCCCCEEEEcc
Q 002652 171 SSEVNIDHGDIISFAA 186 (896)
Q Consensus 171 g~~~~L~~GDvIsLa~ 186 (896)
+....|.+||+|.||.
T Consensus 81 ~~~~~L~~GD~I~iG~ 96 (396)
T TIGR03354 81 GNPVRLEQGDRLRLGD 96 (396)
T ss_pred CCceEcCCCCEEEECC
Confidence 7778999999999995
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.20 E-value=9.8e-07 Score=112.82 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=5.9
Q ss_pred ceeecCcccc
Q 002652 159 GTYVNCERFK 168 (896)
Q Consensus 159 GTfVNg~ri~ 168 (896)
-.|+||..+.
T Consensus 109 ~~~~n~~~~~ 118 (1164)
T TIGR02169 109 YYYLNGQRVR 118 (1164)
T ss_pred eEEECCcccc
Confidence 3566776554
No 18
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=5e-07 Score=109.02 Aligned_cols=371 Identities=15% Similarity=0.160 Sum_probs=184.8
Q ss_pred cccccccceeeecccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH
Q 002652 209 EGAAAKRKAEEYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN---RVVVERHEKEMKE 285 (896)
Q Consensus 209 ~g~~~~eKSgamtGgs~~~sG~~~sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei---~~ir~r~E~El~E 285 (896)
+|++ +.++|+||||+..+.+-..- -|.++..++.++...+.+++.+...+..++... +.++..++-.+.+
T Consensus 651 ~GDV-~dP~GtlTGGs~~~~a~~L~------~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~ 723 (1174)
T KOG0933|consen 651 EGDV-YDPSGTLTGGSRSKGADLLR------QLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHE 723 (1174)
T ss_pred cCce-eCCCCcccCCCCCCcccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 89999999999777653221 245666666666666666666665555555443 4444444444444
Q ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 002652 286 MKESVS-------ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ----SCTEANEIMKSQKVTI 354 (896)
Q Consensus 286 l~e~l~-------kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~----~~~eLekeik~LE~eI 354 (896)
+.--.. .++...+.++...+++.+.+|.+....+.+.+..+..+...+..... ++.++.++++.+++.+
T Consensus 724 l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 724 LALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 432221 35556666666666666666666666666666666666665555443 3345555555555444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 355 DELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLD 434 (896)
Q Consensus 355 ~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE 434 (896)
++..+.++.-... .+-+.-..++++..++....++. .....+..+...+..+..........+..++.+|.
T Consensus 804 e~~~~~~ek~~~e-~e~l~lE~e~l~~e~~~~k~~l~--------~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 804 EESSKELEKRENE-YERLQLEHEELEKEISSLKQQLE--------QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 4444333321110 11111122333333333333222 33334444444444444444444444555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 002652 435 ETRERLVTSDNKVRLLETQVCKEQN-------VSASWKKRVEELENEIKKLREELESEKQ-------------------- 487 (896)
Q Consensus 435 ~lra~l~~lEkk~reLdk~LeEek~-------~~~~lqkel~elE~EireLe~ELE~~k~-------------------- 487 (896)
...+.+...+.++..+....+.... .+..+..++..++.+-...+.+++.+..
T Consensus 875 ~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yD 954 (1174)
T KOG0933|consen 875 DQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYD 954 (1174)
T ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccc
Confidence 5555555555444443333333322 2222333333333333333333333220
Q ss_pred ----------HHHHHHHHHHHHHHHHHH-HHhhhHHHHHHH---HHHHH-------HHHHHHHHHH-----HHhhhhHHH
Q 002652 488 ----------AAREVAWAKVSGLELDIL-AATRDLDFERRR---LKAAR-------ERIMLRETQL-----RAFYSTTEE 541 (896)
Q Consensus 488 ----------~~~Ee~~~ki~~LE~Eie-ka~reLE~Ek~r---Lq~~r-------erL~~~eqq~-----ka~iek~EE 541 (896)
.....+..+...|+.-+. +....||..... |..-+ ..|......+ ++..-+.+.
T Consensus 955 f~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~ 1034 (1174)
T KOG0933|consen 955 FESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEK 1034 (1174)
T ss_pred cccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222223333332222 233334333332 22111 1222221111 233466777
Q ss_pred HHHHHHHHHHHHHHHh-hhh-hhhhhhcccccccccCCCCC---CCcccccCccccccc
Q 002652 542 ISVLFARQQEQLKAMQ-KTL-EDEENYENTSVDIDLCVPDG---ENSRTIVGEKLPNGH 595 (896)
Q Consensus 542 iee~fkk~~~qL~~lq-~~L-EdEek~~s~~leld~~p~~k---rleamSGGEKs~~~~ 595 (896)
++..|=.+|..|--+- ..| .-+-+-|..++++.|.=.+= =|.-||||++|-+--
T Consensus 1035 VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G~iWKeSL~ELSGGQRSLVAL 1093 (1174)
T KOG0933|consen 1035 VNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFGGIWKESLSELSGGQRSLVAL 1093 (1174)
T ss_pred HhhhHHHHHHHhCCCccccccCCCCCccccceEEEEEeCccHHHHHHHhcCchHHHHHH
Confidence 8888888888885544 555 44456677788777743322 788999999997643
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.15 E-value=5.4e-07 Score=115.90 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=34.9
Q ss_pred cccccccceeeecccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 209 EGAAAKRKAEEYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 209 ~g~~~~eKSgamtGgs~~~sG~~~sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
+|++ ++++|+|+||++.+++..+..........++..+......+..++......+..+...+
T Consensus 642 ~G~~-~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1163)
T COG1196 642 DGDL-VEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLL 704 (1163)
T ss_pred CCcE-EeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667 99999999997777664221111111234455555555555555555544444444444
No 20
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.12 E-value=1e-10 Score=121.35 Aligned_cols=129 Identities=17% Similarity=0.143 Sum_probs=94.5
Q ss_pred CCCCCceeeeccccCCCCCCCCCCCceEEEEeecccccccCcceeEEe-cCCceEecCCCCCCceecCCCcccccceEEE
Q 002652 53 VVPSHFVFWVAGTYAAQPLQNYDPKVWGVLTAISNNARKRHQGINILL-TADEHCIGRLVDDAHFQIDSNAVSANHCKIY 131 (896)
Q Consensus 53 ~~~~~~~~~va~~~~~qp~~~~~~~~WG~L~~i~~~~~~r~~g~~i~L-~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~ 131 (896)
+-..+.+++|+.+|..+|.+-.+-..|-.....+. . .+..+.+ ..+.|+|||....+||.|++|..|+.||+|.
T Consensus 148 ~E~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~-e----~l~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQ 222 (293)
T KOG1882|consen 148 LEDTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCY-E----VLPVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQ 222 (293)
T ss_pred hhhhcceeeEEEEecCCchhcCchhheecccccCC-c----ccchheeeeeeeeecCceeeeeccCCCCccccccceeee
Confidence 33455578899999999988776666765443322 1 1112222 3578999998888899999999999999999
Q ss_pred EeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCccccCCCCEEEEccC
Q 002652 132 RKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (896)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~ri~kng~~~~L~~GDvIsLa~d 187 (896)
.....+.-....--.....||.| .|+||||||..+|.+ ..++.|..+|||.|++.
T Consensus 223 yR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~Iep-qRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 223 YRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEP-QRYYELREKDVLKFGFS 278 (293)
T ss_pred eeecccccCCCccceeeeeEEEecCCCCcceecCcccCc-hheeeeecCceeeeccc
Confidence 87654321111001234589999 599999999999999 78999999999999964
No 21
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.3e-10 Score=129.46 Aligned_cols=115 Identities=30% Similarity=0.288 Sum_probs=89.1
Q ss_pred CCCCCceEEEEeecccccccCcceeEEecCCceEecCCCCCCceecCCCcccccceEEEEecc----CCCCCCCCCCCCc
Q 002652 73 NYDPKVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKF----ASGDLDHSPSGCS 148 (896)
Q Consensus 73 ~~~~~~WG~L~~i~~~~~~r~~g~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~----~~~~~~~~~~~~~ 148 (896)
+..+.+|++|+.+.... .++.+..++|+|||++.| +++++.+.+|.+|+.|+.... .+-..+ .-..+
T Consensus 40 ~~~~~~r~r~~~v~~~~------~~~d~~nd~f~fGR~~~~-d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr--~~~sn 110 (475)
T KOG0615|consen 40 CATVKPRARLVGVRRGI------KSIDLANDEFTFGRGDSC-DAPLNLNNVSNKHFKILLYNKISKIHFRIDR--DKNSN 110 (475)
T ss_pred cccccchhhhcceeecc------ccceeccceEEecCCCcc-cccccCccccccchheeeeeeeeeeeecccC--CCccc
Confidence 44567799999887644 478899999999999988 899888889999998875410 000111 12446
Q ss_pred eEEEEeCCCCceeecCccccCCCCccccCCCCEEEEccCCCCCccEEEEEccc
Q 002652 149 SVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDIISFAAPPQHDLAFAFVFRDV 201 (896)
Q Consensus 149 ~~~L~D~StNGTfVNg~ri~kng~~~~L~~GDvIsLa~dp~~~~af~FVF~dt 201 (896)
++||.|.|+||||||..+|++ +..+.|++||+|.|+.+. .-.|||-+.
T Consensus 111 ~~y~~DhS~nGT~VN~e~i~k-~~~r~lkN~dei~is~p~----~~~~v~~~~ 158 (475)
T KOG0615|consen 111 RVYLHDHSRNGTFVNDEMIGK-GLSRILKNGDEISISIPA----LKIFVFEDL 158 (475)
T ss_pred eEEEEecccCcccccHhHhhc-cccccccCCCEEEeccch----hheeeeecc
Confidence 899999999999999999999 788999999999988753 345677765
No 22
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.07 E-value=3.4e-10 Score=136.08 Aligned_cols=93 Identities=25% Similarity=0.365 Sum_probs=72.1
Q ss_pred CceEEEEeecccccccCcceeEEe---cCCceEecCCCCCCce-----ecCCCcccccceEEEEeccCCCCCCCCCCCCc
Q 002652 77 KVWGVLTAISNNARKRHQGINILL---TADEHCIGRLVDDAHF-----QIDSNAVSANHCKIYRKKFASGDLDHSPSGCS 148 (896)
Q Consensus 77 ~~WG~L~~i~~~~~~r~~g~~i~L---~~~~~~IGR~~~~~di-----~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~ 148 (896)
.-| .|+|++.... ....|.| ....|+|||.+.| ++ +|+++.||+.||+|++++.
T Consensus 532 ~~w-~l~~~~~~~~---~~~~~~l~~~~~~p~~iG~~~~~-~~~~~~i~i~~~~vS~~Ha~i~~~~~------------- 593 (668)
T PLN02927 532 GEW-YLIPHGDDCC---VSETLCLTKDEDQPCIVGSEPDQ-DFPGMRIVIPSSQVSKMHARVIYKDG------------- 593 (668)
T ss_pred CCe-EEEecCCCCc---ccceeeeecCCCCCeEecCCCCc-CCCCceEEecCCccChhHeEEEEECC-------------
Confidence 346 3566654322 1124677 5567999999998 75 9999999999999999864
Q ss_pred eEEEEe-CCCCceeecCcc---c--cCCCCccccCCCCEEEEccCC
Q 002652 149 SVCLKD-TSTNGTYVNCER---F--KKNSSEVNIDHGDIISFAAPP 188 (896)
Q Consensus 149 ~~~L~D-~StNGTfVNg~r---i--~kng~~~~L~~GDvIsLa~dp 188 (896)
.+||+| +|+|||||||++ | .+ +.+..|++||+|.|+.+.
T Consensus 594 ~~~~~Dl~S~nGT~v~~~~~~r~~~~p-~~~~~l~~~d~I~~g~~~ 638 (668)
T PLN02927 594 AFFLMDLRSEHGTYVTDNEGRRYRATP-NFPARFRSSDIIEFGSDK 638 (668)
T ss_pred EEEEEECCCCCccEEeCCCCceEecCC-CCceEeCCCCEEEeCCCc
Confidence 599999 699999998887 4 45 456899999999999754
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=5.8e-06 Score=103.45 Aligned_cols=162 Identities=18% Similarity=0.220 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQ-----NVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGL 500 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek-----~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~L 500 (896)
+..+..+++.++..+..+..++..+...+++.. ..+..+...+..+..++.++..++..+. ...+.+...+..+
T Consensus 621 l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~-~~i~~l~~~i~~~ 699 (880)
T PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELE-KRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334444444444444444444444444444443 3334444444444444444444444444 4444444444343
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHhh--hhHHHHHHHHHHHHHHHHHHh-h--hhhhhhhhcccccc
Q 002652 501 ELDILAATRDLDFERRRLKAARERIMLR---ETQLRAFY--STTEEISVLFARQQEQLKAMQ-K--TLEDEENYENTSVD 572 (896)
Q Consensus 501 E~Eieka~reLE~Ek~rLq~~rerL~~~---eqq~ka~i--ek~EEiee~fkk~~~qL~~lq-~--~LEdEek~~s~~le 572 (896)
+.++.+... +......+......+... .......+ .....|+..+..+|..|..+. . .+... . ..+.
T Consensus 700 ~~~~~~l~~-~~~~~~~l~~~~~~l~~lr~~~~~~~~~l~~~~~~~l~~~~~~if~~l~~~~~~~~~l~~~-~---~~~~ 774 (880)
T PRK03918 700 KEELEEREK-AKKELEKLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTEGKYSGVRVKAE-E---NKVK 774 (880)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEEecC-C---CceE
Confidence 333322111 111112222222222211 11222222 345566666677777774322 1 22110 1 1123
Q ss_pred cccCCCCC--CCcccccCccccc
Q 002652 573 IDLCVPDG--ENSRTIVGEKLPN 593 (896)
Q Consensus 573 ld~~p~~k--rleamSGGEKs~~ 593 (896)
+.+...+. .+..||||++..+
T Consensus 775 i~~l~~g~~~~~~~lS~G~~~~~ 797 (880)
T PRK03918 775 LFVVYQGKERPLTFLSGGERIAL 797 (880)
T ss_pred EEEeCCCCcCChhhCCHhHHHHH
Confidence 32322332 7788999998743
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=99.00 E-value=2e-05 Score=98.78 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=7.7
Q ss_pred CCcccccCccc
Q 002652 581 ENSRTIVGEKL 591 (896)
Q Consensus 581 rleamSGGEKs 591 (896)
.+..||||+|-
T Consensus 778 ~~~~lS~G~~~ 788 (880)
T PRK02224 778 EPEQLSGGERA 788 (880)
T ss_pred ChhhcCccHHH
Confidence 46677777765
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.9e-05 Score=99.09 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=4.3
Q ss_pred cccccCC
Q 002652 26 KVNVNAS 32 (896)
Q Consensus 26 ~~~~~~~ 32 (896)
++|++-|
T Consensus 24 g~~~i~G 30 (880)
T PRK02224 24 GVTVIHG 30 (880)
T ss_pred CeEEEEC
Confidence 5666655
No 26
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=98.95 E-value=1.3e-09 Score=111.29 Aligned_cols=73 Identities=37% Similarity=0.579 Sum_probs=63.2
Q ss_pred EEecCCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCcccc
Q 002652 98 ILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNI 176 (896)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~ri~kng~~~~L 176 (896)
+.+....++|||++++ +++|++..|||+||.|++... .+|++| .|+|||||||.++.. ...|
T Consensus 84 ~~~~~~~~tigr~~~~-~i~~~~~~vSR~Ha~l~~~~~-------------~~~~~d~~S~nGt~vn~~~v~~---~~~l 146 (191)
T COG1716 84 IVLGEPVTTIGRDPDN-DIVLDDDVVSRRHAELRREGN-------------EVFLEDLGSTNGTYVNGEKVRQ---RVLL 146 (191)
T ss_pred cccccceEEeccCCCC-CEEcCCCccccceEEEEEeCC-------------ceEEEECCCCcceEECCeEccC---cEEc
Confidence 3344457999998887 999999999999999999864 489999 699999999999985 4788
Q ss_pred CCCCEEEEccC
Q 002652 177 DHGDIISFAAP 187 (896)
Q Consensus 177 ~~GDvIsLa~d 187 (896)
.+||+|.|+..
T Consensus 147 ~~gd~i~i~~~ 157 (191)
T COG1716 147 QDGDVIRLGGT 157 (191)
T ss_pred CCCCEEEECcc
Confidence 99999999964
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.91 E-value=3.3e-05 Score=85.54 Aligned_cols=102 Identities=24% Similarity=0.356 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 250 SNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKES-------VSISYLHQLKVLRDMLDAKQKELAEISRISAEQ 322 (896)
Q Consensus 250 e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~-------l~kklE~QLeELq~kLee~ekeL~el~~k~~kL 322 (896)
.+..|..++..++..+..|+.+...+... +..+... +...|+.++.+++..++....+...+.-.+..+
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~----i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESE----IEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 34456666666666666666665555444 4444333 345688888888888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 323 KHEMEDLNDRLSASMQSCTEANEIMKSQKVTID 355 (896)
Q Consensus 323 EsEleEL~eqLee~e~~~~eLekeik~LE~eI~ 355 (896)
..++.++..++......+..+..++..+.+.+.
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 777777777777776666666665555554443
No 28
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.88 E-value=2.4e-09 Score=119.65 Aligned_cols=73 Identities=33% Similarity=0.466 Sum_probs=64.0
Q ss_pred EEecCCceEecCCCCCCceecCCC--cccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCCCc-c
Q 002652 98 ILLTADEHCIGRLVDDAHFQIDSN--AVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSE-V 174 (896)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~--~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~ri~kng~~-~ 174 (896)
..+.....+|||+++| +++|+++ .||+.||+|.+... .|||.|.|.|||||||-.+.. +.. .
T Consensus 21 ~~f~~~~g~IGrs~dc-dW~i~D~~~~VS~~Hc~I~~~dg-------------~f~L~DtS~g~l~VNgs~~~~-g~~~~ 85 (430)
T COG3456 21 KLFDRGGGVIGRSPDC-DWQIDDPERFVSKQHCTISYRDG-------------GFCLTDTSNGGLLVNGSDLPL-GEGSA 85 (430)
T ss_pred hhhhcCCcccccCCCC-CccccCcccccchhheEEEecCC-------------eEEEEecCCCceeecccccCC-CCCcc
Confidence 4456788999999998 9999986 89999999998764 499999999999999999877 444 8
Q ss_pred ccCCCCEEEEc
Q 002652 175 NIDHGDIISFA 185 (896)
Q Consensus 175 ~L~~GDvIsLa 185 (896)
+|+.||+|.||
T Consensus 86 RLqqGd~i~iG 96 (430)
T COG3456 86 RLQQGDEILIG 96 (430)
T ss_pred ccccCCEEeec
Confidence 99999999998
No 29
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.87 E-value=2.4e-09 Score=86.82 Aligned_cols=50 Identities=34% Similarity=0.428 Sum_probs=43.4
Q ss_pred eEecCCC-CCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCC-CCceeecCccc
Q 002652 105 HCIGRLV-DDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTS-TNGTYVNCERF 167 (896)
Q Consensus 105 ~~IGR~~-~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~S-tNGTfVNg~ri 167 (896)
++|||.+ .| +++|+++.||+.||+|++... ..|||.|.+ +|||||||.+|
T Consensus 1 ~~iGr~~~~~-~i~~~~~~vs~~H~~i~~~~~------------~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDC-DIQLPGPSISRRHAEIVYDGG------------GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCC-CEEeCCCCcchhHcEEEECCC------------CeEEEEECCCCCCeeECCEEC
Confidence 4799999 66 999999999999999998653 149999965 99999999875
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.84 E-value=0.00022 Score=83.73 Aligned_cols=29 Identities=28% Similarity=0.242 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 002652 246 SLQRSNTELRKQLESQVLEIDKLRNENRV 274 (896)
Q Consensus 246 ~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ 274 (896)
.|+..+.....+.+++......|+.++..
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~ 168 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQ 168 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555433
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=0.00016 Score=94.61 Aligned_cols=45 Identities=4% Similarity=0.003 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 002652 524 RIMLRETQLRAFY--STTEEISVLFARQQEQLKAMQKTLEDEENYEN 568 (896)
Q Consensus 524 rL~~~eqq~ka~i--ek~EEiee~fkk~~~qL~~lq~~LEdEek~~s 568 (896)
+|+....+++.++ ..+..++.++++..-++.......+|=.+|..
T Consensus 1079 ~le~qi~~l~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~ 1125 (1311)
T TIGR00606 1079 GYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYK 1125 (1311)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566 45777777777777777766666666555544
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.82 E-value=0.00094 Score=78.62 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002652 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENR 273 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~ 273 (896)
++....+++.+|......+......++.++.
T Consensus 144 qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~ 174 (546)
T PF07888_consen 144 QLEECQKEKEELLKENEQLEEEVEQLREEVE 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444444444443
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=0.00019 Score=93.86 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 447 VRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGL 500 (896)
Q Consensus 447 ~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~L 500 (896)
+..+...+......+..++.++..+..++..++.+|.... .....+...+..+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~-~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQK-IQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444444444433444445555555555555555555544 4444444444443
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=98.78 E-value=0.00027 Score=88.73 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=4.0
Q ss_pred ccceEEEEe
Q 002652 125 ANHCKIYRK 133 (896)
Q Consensus 125 r~Hc~I~~~ 133 (896)
+.+++|.|.
T Consensus 81 ~~~~~i~R~ 89 (880)
T PRK03918 81 GRKYRIVRS 89 (880)
T ss_pred CeEEEEEEE
Confidence 344444443
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.78 E-value=0.00035 Score=83.14 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAK 308 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ 308 (896)
++..-+.|.+-...|+.++......|..|.+.+- +.++++..+++.+ ..++.++++....|+..
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~----~lE~ekq~lQ~ti-~~~q~d~ke~etelE~~ 146 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCL----RLEMEKQKLQDTI-QGAQDDKKENEIEIENL 146 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 3444455555555555555555555555554432 3345566666665 33444444444444443
No 36
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.76 E-value=1.8e-08 Score=118.18 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=71.1
Q ss_pred CceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCccccCCCCE
Q 002652 103 DEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNIDHGDI 181 (896)
Q Consensus 103 ~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~ri~kng~~~~L~~GDv 181 (896)
..|+|||...| |+.+.+|.|||.||.|.+... ++++.. .+.+..|||.| .||.|||||-+|+.+ ..+..++.|+|
T Consensus 177 ~~~~fgr~~~c-D~~~eHpsISr~h~vlQy~~~-~~~~p~-~s~~~g~~i~dlgsThgt~~NK~rvpp-k~yir~~Vg~v 252 (793)
T KOG1881|consen 177 AACLFGRLGGC-DVALEHPSISRFHAVLQYKAS-GPDDPC-ASNGEGWYIYDLGSTHGTFLNKDRVPP-KVYIRDRVGHV 252 (793)
T ss_pred eeEEecccCCC-ccccccCcccccceeeeccCC-CCCccc-cCCCCceEEeeccccccceeccccCCC-cchhhhhHHHH
Confidence 45899999987 999999999999999998764 333211 12334599999 699999999999999 77888899999
Q ss_pred EEEccCCCCCccEEEEEcc
Q 002652 182 ISFAAPPQHDLAFAFVFRD 200 (896)
Q Consensus 182 IsLa~dp~~~~af~FVF~d 200 (896)
+.|+.. .+.|+|.-
T Consensus 253 ~~fggs-----Trl~i~Qg 266 (793)
T KOG1881|consen 253 ARFGGS-----TRLYIFQG 266 (793)
T ss_pred HHhcCc-----eEEEEeeC
Confidence 999964 36677743
No 37
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.76 E-value=0.0002 Score=88.97 Aligned_cols=128 Identities=18% Similarity=0.282 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---Hhhh
Q 002652 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESE----------KQAAREVAWAKVSGLELDILA---ATRD 510 (896)
Q Consensus 444 Ekk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~----------k~~~~Ee~~~ki~~LE~Eiek---a~re 510 (896)
+.+++++.+.+.+++.....++.-+..++.++.-|+..+-.. .+....++......|++|+++ ..++
T Consensus 699 e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~e 778 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRE 778 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 455566666666666666555555555555544444322221 111333333334444444442 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-----------HhhhhhhhhhhcccccccccCC
Q 002652 511 LDFERRRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKA-----------MQKTLEDEENYENTSVDIDLCV 577 (896)
Q Consensus 511 LE~Ek~rLq~~rerL~~~eqq~ka~iek~EEiee~fkk~~~qL~~-----------lq~~LEdEek~~s~~leld~~p 577 (896)
|....+.+.. ...+.+.+..+.+..+....+.....+|+. ++..|+. +++|+..+++++.+
T Consensus 779 Lssq~~~~~t-----~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~~~k~lq~~lea-e~~~~~~~ktq~~e 850 (1317)
T KOG0612|consen 779 LKSQEQEVNT-----KMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWGQMKELQDQLEA-EQCFSSLMKTQIIE 850 (1317)
T ss_pred hhhHHHhhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH-HHHHHHHHHhhhhh
Confidence 3322222211 223444444455555555555555555533 5567777 78888888777654
No 38
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.70 E-value=8.4e-05 Score=91.75 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=11.6
Q ss_pred CCcccccCcccccc
Q 002652 581 ENSRTIVGEKLPNG 594 (896)
Q Consensus 581 rleamSGGEKs~~~ 594 (896)
.+.+|||||+|-.-
T Consensus 986 d~~gLSGGERSFsT 999 (1074)
T KOG0250|consen 986 DTRGLSGGERSFST 999 (1074)
T ss_pred cccccCcccchHHH
Confidence 68899999998543
No 39
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.70 E-value=0.00043 Score=83.46 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 291 SISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 291 ~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
+.++..+..+|+.+|.+..++..++.+...++..++.++...|+-+.-...=+++....|+.++.-++..+++
T Consensus 271 kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~de 343 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDE 343 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888888888888888888888888887776655544444444445555555555544433
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.67 E-value=0.00019 Score=84.20 Aligned_cols=150 Identities=20% Similarity=0.281 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 247 LQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV-------SISYLHQLKVLRDMLDAKQKELAEISRIS 319 (896)
Q Consensus 247 Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l-------~kklE~QLeELq~kLee~ekeL~el~~k~ 319 (896)
=..++..|..+|..+++++.-|+.+.+.+... +..++... ...|+..+..+..-+++..+.+..+...+
T Consensus 40 EK~El~~LNDRLA~YIekVR~LEaqN~~L~~d----i~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei 115 (546)
T KOG0977|consen 40 EKKELQELNDRLAVYIEKVRFLEAQNRKLEHD----INLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEI 115 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999887666555 66666655 35799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSD 399 (896)
Q Consensus 320 ~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~ee 399 (896)
.+|+.++.+|..++.............+......+.+++..+.--+. +...+++.+..|+.++.++..++...++....
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~kr-r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKR-RIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999999999888888877777777666666666654444332 33445556677777777777766666655553
Q ss_pred HH
Q 002652 400 AA 401 (896)
Q Consensus 400 e~ 401 (896)
+.
T Consensus 195 Et 196 (546)
T KOG0977|consen 195 ET 196 (546)
T ss_pred HH
Confidence 33
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.62 E-value=6.1e-05 Score=80.80 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
+..++.++..++..++..|.....+..+++.++..|+.+|..++..+..+...+......+.++...+++
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555555555555555555554444444444444444444444333
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.61 E-value=8.9e-05 Score=79.54 Aligned_cols=44 Identities=34% Similarity=0.494 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 441 VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 441 ~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
..++.+++.|..++.+.......+...+..++.++..|..+|..
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333323333333333333333333333
No 43
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.59 E-value=0.0022 Score=79.71 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 002652 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWA---KVSGLE 501 (896)
Q Consensus 425 elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~---ki~~LE 501 (896)
++++|+.++.+++..+..+....++.+..|++.+....++...+...+..++.++.++-.++ ...+.... .+..|.
T Consensus 662 ~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~-n~~e~~~~~~~~~~~l~ 740 (1074)
T KOG0250|consen 662 EIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELK-NTAEEKQVDISKLEDLA 740 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcchhhhHHHH
Confidence 36677777777777777776666666666666666666666666666666666666665555 31011111 222233
Q ss_pred HHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 502 LDIL---AATRDLDFERRRLKAARERIMLRETQLR 533 (896)
Q Consensus 502 ~Eie---ka~reLE~Ek~rLq~~rerL~~~eqq~k 533 (896)
.++. +.+..|+.....++...+.++.+.+.+.
T Consensus 741 ~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~ 775 (1074)
T KOG0250|consen 741 REIKKKEKEIEEKEAPLEKLKEELEHIELEAQELE 775 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 3466666666666666666666655554
No 44
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.56 E-value=0.0019 Score=84.04 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002652 262 VLEIDKLRNENRVVVERHEKEMKEMKESVS 291 (896)
Q Consensus 262 ~~~i~~Lr~ei~~ir~r~E~El~El~e~l~ 291 (896)
...+..++.+....+..++..+..+...++
T Consensus 401 ~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~ 430 (1201)
T PF12128_consen 401 QAQQDEIREEKAERREQIEEEYQALEQELR 430 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555554
No 45
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.56 E-value=0.0016 Score=80.21 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 421 klr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k 486 (896)
....+++.++.++.+++..+..|+.++.+....|...+.....+.....-...+|..|.-.+++.+
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~r 527 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKR 527 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhh
Confidence 444555666666666666666666666666666655555554443333333344444444444443
No 46
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.54 E-value=0.0013 Score=78.37 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=44.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 418 AEKQSSLQVE---SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 418 ~EKklr~elE---dLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k 486 (896)
.++++..+++ -++..-..++.+...++--.+.++..+.+|+.+..-|..++.+.+-.++.++++|+.++
T Consensus 233 ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 233 EVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444444433 33333334555555665555667777777777777778888888888888888888776
No 47
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.53 E-value=0.00074 Score=82.44 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 429 LKLKLDETRERLVTSDNKVRLLETQVCK--EQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILA 506 (896)
Q Consensus 429 Lq~eLE~lra~l~~lEkk~reLdk~LeE--ek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eiek 506 (896)
.+..+..+...+..++.++..+.++|.. ....+..+..++..++.++.+++.++.... ...+.++..+..++.++.+
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELL-RQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666643 123455566666666666666666666666 5566666666666655543
Q ss_pred HhhhHHHHHHHHHHH---HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHh---hhhh-hhhhhcccccccccCC
Q 002652 507 ATRDLDFERRRLKAA---RERIMLRETQLRAFY--STTEEISVLFARQQEQLKAMQ---KTLE-DEENYENTSVDIDLCV 577 (896)
Q Consensus 507 a~reLE~Ek~rLq~~---rerL~~~eqq~ka~i--ek~EEiee~fkk~~~qL~~lq---~~LE-dEek~~s~~leld~~p 577 (896)
...... ....+... .+++......++..+ .....++..+...|..|.... ..+. |.+++.-.++. +
T Consensus 468 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k~~~~~~v~id~~~~~~~l~~----~ 542 (650)
T TIGR03185 468 KTKQKI-NAFELERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRKHNLISRLKIDPETFAVSLYD----N 542 (650)
T ss_pred HHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeEEEEcCCceeEEEEc----C
Confidence 211111 11111111 122333333332222 444556666667777775432 2221 11222222221 1
Q ss_pred CCC--CCcccccCcccccc
Q 002652 578 PDG--ENSRTIVGEKLPNG 594 (896)
Q Consensus 578 ~~k--rleamSGGEKs~~~ 594 (896)
-+. .+..||||||..+.
T Consensus 543 ~g~~~~~~~lS~Ge~~~~~ 561 (650)
T TIGR03185 543 NGKHIDKERLSAGERQILA 561 (650)
T ss_pred CCCCcCCCCCCHHHHHHHH
Confidence 123 67889999998754
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.53 E-value=0.0031 Score=82.05 Aligned_cols=42 Identities=24% Similarity=0.398 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002652 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (896)
Q Consensus 320 ~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qL 361 (896)
..|+.+++.+..+|..+.....++++.++.....+..+...+
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~ 644 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREI 644 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555433
No 49
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00069 Score=80.60 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKV 497 (896)
Q Consensus 445 kk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki 497 (896)
.++..|.+........+..+.-.+++++++...--.++.-+. ..+++++..+
T Consensus 528 ~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n-~qlkelk~~~ 579 (1118)
T KOG1029|consen 528 QRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFN-NQLKELKEDV 579 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHH
Confidence 444555555555555555555555555555555444444444 4444444333
No 50
>PRK01156 chromosome segregation protein; Provisional
Probab=98.51 E-value=0.0066 Score=76.78 Aligned_cols=23 Identities=4% Similarity=0.208 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 002652 428 SLKLKLDETRERLVTSDNKVRLL 450 (896)
Q Consensus 428 dLq~eLE~lra~l~~lEkk~reL 450 (896)
.+..+++.+...+..+.+++..|
T Consensus 367 ~l~~~l~~~~~~~~~~~~~~~~l 389 (895)
T PRK01156 367 SYLKSIESLKKKIEEYSKNIERM 389 (895)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Confidence 33344443333333333333333
No 51
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=0.0016 Score=79.43 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 002652 245 RSLQRSNTELRKQLESQ--VLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQL-------KVLRDMLDAKQKELAEI 315 (896)
Q Consensus 245 r~Le~e~~eL~~qlee~--~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QL-------eELq~kLee~ekeL~el 315 (896)
..++..+..|+.+-+++ ..+++..++.+. =+.|..++.++..++- +++... ..+...++..+.+...+
T Consensus 194 ~yieerLreLEeEKeeL~~Yqkldk~rr~lE--YtiYdrEl~E~~~~l~-~le~~r~~~~e~s~~~~~~~~~~~d~~~~~ 270 (1200)
T KOG0964|consen 194 KYIEERLRELEEEKEELEKYQKLDKERRSLE--YTIYDRELNEINGELE-RLEEDRSSAPEESEQYIDALDKVEDESEDL 270 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhHhhhh--hhhhhhHHHHHHHHHH-HHHHHHhccchhhhhHHHHHHHHHHHHHHH
Confidence 44555555555444443 333344443331 1245666666666662 222222 22333444555555567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002652 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (896)
Q Consensus 316 ~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE 371 (896)
...+.+|++.+.-|....+++..+...+.+.+..|+-.+.+|+.++.-+..++...
T Consensus 271 ~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~ 326 (1200)
T KOG0964|consen 271 KCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLA 326 (1200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhH
Confidence 77777777777777777777778878888888888889999998888877655333
No 52
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.49 E-value=0.0053 Score=75.76 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 297 QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
+..+++..++.++..+.........|+.++..|..+|......+.
T Consensus 316 ~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 316 QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443333
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=0.0066 Score=75.75 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSG 499 (896)
Q Consensus 444 Ekk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~ 499 (896)
..++..+++.|..|-..+..+..+++-++.++.-|....+... ...++++.++.+
T Consensus 478 ~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~-~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 478 REEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL-KKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455555555555555555555555555555444444333333 334444444433
No 54
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.47 E-value=2.8e-08 Score=123.45 Aligned_cols=291 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002652 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (896)
Q Consensus 292 kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE 371 (896)
+.+..++.++...+++..+.+.++...+..|+.++.++..+|.+++..+..+...+.+++..|..++.+++-....+.++
T Consensus 436 k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE 515 (859)
T PF01576_consen 436 KQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEE 515 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 56666666776667766666667777777777777777777777777777777666777777766666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 372 RENAEADLKAAVQKSQLETQEKLK----------RLSDAA----------SRRELEQQEVINKLQIAEKQSSLQVESLKL 431 (896)
Q Consensus 372 LEe~~~eLk~qIqkl~~El~eerk----------k~eee~----------~~~ieElee~l~KLqE~EKklr~elEdLq~ 431 (896)
.+.....++++|..++.++..+.+ +++.++ .....+....+.+++...+.+...+++.+.
T Consensus 516 ~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~ 595 (859)
T PF01576_consen 516 FEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQR 595 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 555444445555555555433222 111000 001111111222233333344444455555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002652 432 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDL 511 (896)
Q Consensus 432 eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reL 511 (896)
.++.++..+..++++++.|...+.+.+.....+......++.++.++..+|..+. .....+......|+.++.....+|
T Consensus 596 ~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~-~~~~~l~~~kr~le~~i~~l~~el 674 (859)
T PF01576_consen 596 AREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELT-SQNSSLSEEKRKLEAEIQQLEEEL 674 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5555666777777777888888888777777777777777777777777766655 444444444445555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhccc------ccccccCC
Q 002652 512 DFERRRLKAARERIMLRETQL-------RAFYSTTEEISVLFARQQEQLKAMQKTL-EDEENYENT------SVDIDLCV 577 (896)
Q Consensus 512 E~Ek~rLq~~rerL~~~eqq~-------ka~iek~EEiee~fkk~~~qL~~lq~~L-EdEek~~s~------~leld~~p 577 (896)
+.....+...-+++.--..+. ..+-+....++..++.+..++++|+.-| +.+.....+ .++..|++
T Consensus 675 eE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~e 754 (859)
T PF01576_consen 675 EEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRE 754 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHH
Confidence 444444433322222221111 1122444445556667777777777666 433333333 22455555
Q ss_pred CCCCCc
Q 002652 578 PDGENS 583 (896)
Q Consensus 578 ~~krle 583 (896)
++.+|+
T Consensus 755 LE~~Le 760 (859)
T PF01576_consen 755 LEEELE 760 (859)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 554443
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.46 E-value=0.009 Score=78.64 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 245 RSLQRSNTELRKQLESQVLEIDKL 268 (896)
Q Consensus 245 r~Le~e~~eL~~qlee~~~~i~~L 268 (896)
+.|-.+...++.++.....++...
T Consensus 282 R~liEEAag~r~rk~eA~kkLe~t 305 (1486)
T PRK04863 282 RVHLEEALELRRELYTSRRQLAAE 305 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433333333
No 56
>PRK11637 AmiB activator; Provisional
Probab=98.44 E-value=0.00025 Score=82.32 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhcccccccccCCCCCCC
Q 002652 734 TIRTADLLASEVAGSWACSTAPSVHGE 760 (896)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (896)
.+..-|.|+. .|+=.++++|.+|=|
T Consensus 388 ~V~~G~~ig~--~g~~g~~~~~~l~fe 412 (428)
T PRK11637 388 QVRAGQPIAL--VGSSGGQGRPSLYFE 412 (428)
T ss_pred EECCCCeEEe--ecCCCCCCCCeEEEE
Confidence 4555555542 244445677877754
No 57
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.43 E-value=0.0032 Score=82.72 Aligned_cols=15 Identities=13% Similarity=-0.190 Sum_probs=10.9
Q ss_pred CCcccccCccccccc
Q 002652 581 ENSRTIVGEKLPNGH 595 (896)
Q Consensus 581 rleamSGGEKs~~~~ 595 (896)
++..+.||.|..+..
T Consensus 663 ~l~~~~~g~~~~l~~ 677 (1486)
T PRK04863 663 RLSQPGGSEDPRLNA 677 (1486)
T ss_pred hhhccCCCccHHHHH
Confidence 777777888766654
No 58
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.43 E-value=0.0012 Score=82.32 Aligned_cols=72 Identities=13% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 292 kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
.-++.++++...++.+.+..+..+.+.+..++.+++.+......+......+....+.|+....++....++
T Consensus 490 ~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~ 561 (1317)
T KOG0612|consen 490 ALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESED 561 (1317)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHH
Confidence 335555555555555555555555555555555555555554444444444444444555444444444443
No 59
>PRK01156 chromosome segregation protein; Provisional
Probab=98.42 E-value=0.012 Score=74.39 Aligned_cols=12 Identities=25% Similarity=0.077 Sum_probs=5.8
Q ss_pred CCcccccCcccc
Q 002652 581 ENSRTIVGEKLP 592 (896)
Q Consensus 581 rleamSGGEKs~ 592 (896)
.+..||||++-.
T Consensus 798 ~~~~lS~G~~~~ 809 (895)
T PRK01156 798 GIDSLSGGEKTA 809 (895)
T ss_pred ccccCCHhHHHH
Confidence 344555555443
No 60
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.42 E-value=0.0048 Score=80.62 Aligned_cols=278 Identities=17% Similarity=0.225 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKE-------------MKEMKESVSISYLHQLKVLRDMLDAK 308 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~E-------------l~El~e~l~kklE~QLeELq~kLee~ 308 (896)
.+++.|..+...|+.+-.-+...-.+|..++..+..++.+. +.......+.+++.++.+|...+..+
T Consensus 738 ~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~l 817 (1822)
T KOG4674|consen 738 EKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKL 817 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665554444444444444443333332221 11111222345555555555555555
Q ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------H
Q 002652 309 QKELAE-----------ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLR--------R 369 (896)
Q Consensus 309 ekeL~e-----------l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~--------~ 369 (896)
.+.+.. +...+..++..+.++...+..+...+..+...+..++..+.+|...|....... .
T Consensus 818 k~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~ 897 (1822)
T KOG4674|consen 818 KKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSN 897 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchh
Confidence 554442 444444455555555555555555556666666666666666666666544221 1
Q ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 370 VDR----------ENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRER 439 (896)
Q Consensus 370 EEL----------Ee~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~ 439 (896)
++. ...+.+|+.++.....++.+ |.+........+.....++.+-...+...++.+..++-.++..
T Consensus 898 ~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~----yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ 973 (1822)
T KOG4674|consen 898 EDATILEDTLRKELEEITDLKEELTDALSQIRE----YQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEE 973 (1822)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 110 01111122222222221111 1111112222222222222222233333333444444444444
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHH
Q 002652 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDIL-------AATRDLD 512 (896)
Q Consensus 440 l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie-------ka~reLE 512 (896)
++.+.+++-.|...+ .......+.++..+..++..++.++..+. .....+...+..+...+. ++...|+
T Consensus 974 ls~L~~~~~~l~~e~---~~~~k~~e~~~~~~~~e~~sl~ne~~~~~-~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye 1049 (1822)
T KOG4674|consen 974 LSELEKEIENLREEL---ELSTKGKEDKLLDLSREISSLQNELKSLL-KAASQANEQIEDLQNDLKTETEQLRKAQSKYE 1049 (1822)
T ss_pred HHHHHHHHHHHHHHH---hccccchhhhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333222 11222225566667777777777777776 666666666666554332 5788888
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 513 FERRRLKAARERIML 527 (896)
Q Consensus 513 ~Ek~rLq~~rerL~~ 527 (896)
.+...+......|..
T Consensus 1050 ~el~~ha~~~q~l~k 1064 (1822)
T KOG4674|consen 1050 SELVQHADLTQKLIK 1064 (1822)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877776554443333
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.42 E-value=0.00035 Score=85.28 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 431 LKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGL 500 (896)
Q Consensus 431 ~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~L 500 (896)
.+.+.+...|..+..|-..|+..|..+......|=..+-+...++.-++..|-... .++.+++.+|..|
T Consensus 587 ~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d-~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 587 KDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKD-KEIEELKAKIAQL 655 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34555666666777777777777766666555554444444444444444444433 4444445555443
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.42 E-value=0.00069 Score=80.75 Aligned_cols=15 Identities=20% Similarity=0.023 Sum_probs=11.6
Q ss_pred CCcccccCccccccc
Q 002652 581 ENSRTIVGEKLPNGH 595 (896)
Q Consensus 581 rleamSGGEKs~~~~ 595 (896)
.+..||||||--+..
T Consensus 465 ~~~~lS~Ge~~r~~l 479 (562)
T PHA02562 465 SYASFSQGEKARIDL 479 (562)
T ss_pred ChhhcChhHHHHHHH
Confidence 678999999765554
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.42 E-value=0.00037 Score=83.11 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+.+++..++.....+..+..++..++.++.++...+......+..++..+..++..+..++
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~ 275 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQ 275 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333334444444444444444433
No 64
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.001 Score=79.19 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002652 355 DELKTQLDEERNLRRVDRENAEADLKA 381 (896)
Q Consensus 355 ~ELe~qLEeEr~~~~EELEe~~~eLk~ 381 (896)
.+++++-+++++..++..|.+..+|.+
T Consensus 381 ReiE~qrEEerkkeie~rEaar~ElEk 407 (1118)
T KOG1029|consen 381 REIERQREEERKKEIERREAAREELEK 407 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555555555543
No 65
>PRK11637 AmiB activator; Provisional
Probab=98.41 E-value=0.0004 Score=80.65 Aligned_cols=60 Identities=7% Similarity=0.078 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~EL 357 (896)
+.+++.++...+.++..+..++..++.++..++.+|..++..+..++.++..++..+..+
T Consensus 63 i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 63 VRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333433333333344443333333333333333333333
No 66
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.38 E-value=0.011 Score=70.13 Aligned_cols=200 Identities=14% Similarity=0.174 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDK--LRNE---NRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEIS 316 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~--Lr~e---i~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~ 316 (896)
.+|+.+-++-..|+.+..++..++.. ++.+ ...+...+-.+-..+.+++ -.-...++.|+++..+.+..+.-+.
T Consensus 416 kKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~q-l~qs~iIkKLRAk~ke~etl~~K~g 494 (961)
T KOG4673|consen 416 KKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQ-LAQSAIIKKLRAKIKEAETLEEKKG 494 (961)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 57888888888888888876555422 1111 2223333333333444333 2344557888888777777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 002652 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAA-------VQKSQLE 389 (896)
Q Consensus 317 ~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~q-------Iqkl~~E 389 (896)
..+.+|+++.+.|..-|...+..-..+...|.++..++.-.+..+. +.+.+.++++.+...+++. +++.+.-
T Consensus 495 e~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~-~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrl 573 (961)
T KOG4673|consen 495 ELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYS-NSRALAAALEAQALAEQATNDEARSDLQKENRL 573 (961)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhh
Confidence 8888888888888777666655555555555554443332221111 1123344444443333333 3222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhH
Q 002652 390 TQEKLKRLSDAASRRELEQQEVINKLQIA----EKQSSLQVESLKLKLDETRERLVTS 443 (896)
Q Consensus 390 l~eerkk~eee~~~~ieElee~l~KLqE~----EKklr~elEdLq~eLE~lra~l~~l 443 (896)
.++..........++..+++..+.+.+.. +.-+|.++++|+.+|..+..+...+
T Consensus 574 kQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 574 KQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233335556666666665554322 2345555667777666544443333
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.33 E-value=0.0057 Score=75.65 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASW 464 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~l 464 (896)
|..++.+...+...+.+.-+++.+|++.|++.|.+..+.
T Consensus 1600 l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1600 LAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444555555566666666666665555444
No 68
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.33 E-value=0.024 Score=69.86 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERH 279 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~ 279 (896)
..+..|++.+..|+.++++.-.-+.+++.++..+..++
T Consensus 177 velAdle~kir~LrqElEEK~enll~lr~eLddleae~ 214 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEI 214 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777776555555555554444443
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.21 E-value=0.016 Score=71.94 Aligned_cols=107 Identities=16% Similarity=0.074 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 419 EKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVS 498 (896)
Q Consensus 419 EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~ 498 (896)
.+..-..+..++..|...++.....|+.....-+++.+...+++.|+.++.....+.+.+.+.+...+ ..-..++..++
T Consensus 1586 i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~-~~A~~a~q~~~ 1664 (1758)
T KOG0994|consen 1586 IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAK-EQALSAEQGLE 1664 (1758)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444445566666666666666667666666666666666666666555555555555555555555 44444555554
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002652 499 GLELDILAATRDLDFERRRLKAARERIM 526 (896)
Q Consensus 499 ~LE~Eieka~reLE~Ek~rLq~~rerL~ 526 (896)
.|+..+++..+.++........+|+|.+
T Consensus 1665 ~lq~~~~~~~~l~~~r~~g~~~ar~rAe 1692 (1758)
T KOG0994|consen 1665 ILQKYYELVDRLLEKRMEGSQAARERAE 1692 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 5555555444444444444444444433
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.20 E-value=0.04 Score=67.30 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 002652 254 LRKQLESQVLEIDKLRNE 271 (896)
Q Consensus 254 L~~qlee~~~~i~~Lr~e 271 (896)
|+.|+..+.+++..+|..
T Consensus 229 Lr~QvrdLtEkLetlR~k 246 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLK 246 (1243)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 555555555555555554
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.20 E-value=0.044 Score=72.09 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002652 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQ-AAREVAWAKVSGLELDIL 505 (896)
Q Consensus 427 EdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~-~~~Ee~~~ki~~LE~Eie 505 (896)
.++...|..++..+..+......+-..+...+..++.+..++.+++.+|+........+.. .+.+.+......|..+.+
T Consensus 833 ~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~e 912 (1822)
T KOG4674|consen 833 NSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELE 912 (1822)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHH
Confidence 3444445556666666666666666666666666666666666666666666555555441 124444444445554443
Q ss_pred HH---hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 002652 506 AA---TRDLDFERRRLKAARERIMLRETQLRAFYSTTE 540 (896)
Q Consensus 506 ka---~reLE~Ek~rLq~~rerL~~~eqq~ka~iek~E 540 (896)
+. +..|......+..-.+.....++.+..+..+.+
T Consensus 913 q~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~ld 950 (1822)
T KOG4674|consen 913 EITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELD 950 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 444444333333333333333444433333333
No 72
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.18 E-value=0.021 Score=63.14 Aligned_cols=122 Identities=18% Similarity=0.224 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELA-EISRI 318 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~-el~~k 318 (896)
...++..|..++..|+.++.......+.|..+++.++.. --.++.+.+--+..|. .|..+
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~-------------------sv~~~~~aEqEEE~isN~LlKk 85 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA-------------------SVRIQAKAEQEEEFISNTLLKK 85 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766666655555555554333332 2333444444444444 37777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002652 319 SAEQKHEMEDLNDRLSASMQSC-TEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLK 380 (896)
Q Consensus 319 ~~kLEsEleEL~eqLee~e~~~-~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk 380 (896)
+..++++-..|.-.+...+..+ ..|.+.+.+|..+-.+|...|+.+......-|...+..|.
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le 148 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE 148 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 7777777777766666655544 4677777777776667776666666544444444444443
No 73
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.17 E-value=0.021 Score=62.83 Aligned_cols=88 Identities=22% Similarity=0.316 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~ 320 (896)
+..+..+..+...|...+.......+.++.+++..+.. + ..+-.++.++..++......+.+++.++.
T Consensus 5 ~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ek----R--------deln~kvrE~~e~~~elr~~rdeineev~ 72 (294)
T COG1340 5 LDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEK----R--------DELNAKVRELREKAQELREERDEINEEVQ 72 (294)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566655555555544444444333333 2 22333344444444444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002652 321 EQKHEMEDLNDRLSASMQSC 340 (896)
Q Consensus 321 kLEsEleEL~eqLee~e~~~ 340 (896)
++.....+++..+..+-..+
T Consensus 73 elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 73 ELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555433333
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.17 E-value=0.043 Score=66.27 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=25.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLE 501 (896)
Q Consensus 440 l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE 501 (896)
+..+++++..+...+......+.........++.++.++..++..+. ..+.++...+..|.
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie-~eq~ei~e~l~~Lr 410 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE-KEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34444444444444443333332223333444444444444444444 44444444444444
No 75
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.16 E-value=0.03 Score=66.47 Aligned_cols=101 Identities=21% Similarity=0.342 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 002652 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS--------ASWKKRVEELENEIKKLREELESEKQ---AA 489 (896)
Q Consensus 421 klr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~--------~~lqkel~elE~EireLe~ELE~~k~---~~ 489 (896)
-+..++.-+..+|+.++..+..+++++..|..++....... .+....+..++.++.+|..+|+.+.. .+
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e 311 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE 311 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888888888888888887776554322 22344566677788888888887551 25
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002652 490 REVAWAKVSGLELDILAATRDLDFERRRLKAA 521 (896)
Q Consensus 490 ~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~ 521 (896)
++.....|..|+.++.+++..++..+..|+..
T Consensus 312 ~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 312 REKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666777777777777666666665555443
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.13 E-value=0.051 Score=65.66 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=8.0
Q ss_pred ccceeeecccccc
Q 002652 214 KRKAEEYVSDNKR 226 (896)
Q Consensus 214 ~eKSgamtGgs~~ 226 (896)
+.|.-.|+|.+..
T Consensus 52 kvk~l~l~Ges~~ 64 (569)
T PRK04778 52 KVKKLNLTGQSEE 64 (569)
T ss_pred HHhcCCCCcccHH
Confidence 4455677777744
No 77
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.12 E-value=0.048 Score=65.21 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 420 Kklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
.....+|+.++..|+.+...+..+...+..|...|...+..+..++.+.......+..|..+|..
T Consensus 284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 284 ASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 34444455555555554444445544445555555555444444444444333333333333333
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.046 Score=64.40 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002652 431 LKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (896)
Q Consensus 431 ~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe 479 (896)
..+-.....+..++..+..+...+++.+.....++-++..++..+..++
T Consensus 432 ~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k 480 (581)
T KOG0995|consen 432 EELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKK 480 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433333444444444433333
No 79
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.10 E-value=0.053 Score=64.81 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002652 465 KKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRRLKA 520 (896)
Q Consensus 465 qkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~ 520 (896)
.+.+.+++.+-+-|...+-... .....+..+|..|+.|++.+++..+..-..++.
T Consensus 607 ~K~ieeLqqeNk~LKKk~~aE~-kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~k 661 (786)
T PF05483_consen 607 NKNIEELQQENKALKKKITAES-KQSNVYEIKVNKLQEELENLKKKHEEETDKYQK 661 (786)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444444444444444444 445555666666666666554444444444433
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.08 E-value=0.0087 Score=68.67 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
+..++..++.+++.+.....+..+|+.+|.+++..+..++..+.+....++.+++.|.++...|..
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444555555554444333
No 81
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.06 E-value=0.07 Score=64.83 Aligned_cols=7 Identities=43% Similarity=0.359 Sum_probs=3.8
Q ss_pred hhHHHhh
Q 002652 804 RQALCEM 810 (896)
Q Consensus 804 ~~~~~~~ 810 (896)
-+.|.+|
T Consensus 579 mqLL~ei 585 (617)
T PF15070_consen 579 MQLLQEI 585 (617)
T ss_pred HHHhHhc
Confidence 4556555
No 82
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.078 Score=62.56 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=14.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 241 LDDF-RSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 241 ldkv-r~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
.+++ .+|++..+.+-.+++.+..+.+.|...|
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i 251 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMI 251 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 3444444444444444444444444433
No 83
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.98 E-value=0.067 Score=64.97 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
+...+..|..+++.|..++.........|..-+...+..|.++++.|+.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~ 133 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELER 133 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777888888777777666677776666677777777655554
No 84
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.97 E-value=0.089 Score=62.99 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002652 243 DFRSLQRSNTELRKQLESQVLE 264 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee~~~~ 264 (896)
++..++..+.+++.++......
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~ 56 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAERE 56 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555333
No 85
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.97 E-value=0.097 Score=67.27 Aligned_cols=31 Identities=6% Similarity=0.100 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
++......+...|+..++..-..++.++.++
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l 88 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQL 88 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 86
>PRK11281 hypothetical protein; Provisional
Probab=97.89 E-value=0.11 Score=66.77 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN 344 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLe 344 (896)
.++.++.++...+...++.+.+++.++..+++..+....++.+...++.++.
T Consensus 125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444444444444444444444444333333
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.88 E-value=0.045 Score=63.01 Aligned_cols=65 Identities=12% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002652 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQ 360 (896)
Q Consensus 296 ~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~q 360 (896)
.++..+..++.....+...|+..+.+++.++..+..+|......+..+.+.|..+...+..|+.+
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444444444444444444455555555555555555555555555555554444444433
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.87 E-value=0.02 Score=70.28 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
+.+.+|+.++.+|+.+|...+..-.+||.++
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqi 448 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQI 448 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5567788888888877777666655555553
No 89
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.86 E-value=0.17 Score=62.27 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002652 422 SSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKE 457 (896)
Q Consensus 422 lr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEe 457 (896)
+...|.+++..|+..+..+.....++..|...+.-.
T Consensus 284 L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL 319 (717)
T PF09730_consen 284 LLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDAL 319 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666665555555555555555444433
No 90
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.85 E-value=0.15 Score=62.57 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 272 NRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEM 326 (896)
Q Consensus 272 i~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEl 326 (896)
+..++...+..+.+++..+ -+++.++.++...+++.++...+......+|..++
T Consensus 342 ~~~~~~~l~~~~~ear~~~-~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~el 395 (980)
T KOG0980|consen 342 VAQLKAQLENLKEEARRRI-EQYENQLLALEGELQEQQREAQENREEQEQLRNEL 395 (980)
T ss_pred HHHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555 77888888888888888777665444444444443
No 91
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.85 E-value=0.15 Score=61.63 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=6.8
Q ss_pred ccceeeecccccc
Q 002652 214 KRKAEEYVSDNKR 226 (896)
Q Consensus 214 ~eKSgamtGgs~~ 226 (896)
+.|.-.|+|.+..
T Consensus 48 kvk~l~l~Gqt~~ 60 (560)
T PF06160_consen 48 KVKKLNLTGQTEE 60 (560)
T ss_pred HHHhccccHHHHH
Confidence 4445556666533
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.82 E-value=0.15 Score=60.86 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
|..+......-|..|+++..+.+.......+.+..|+.+...|++-|..
T Consensus 465 LSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~ 513 (961)
T KOG4673|consen 465 LSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRD 513 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 4444444445566666666666666666666666666666555544433
No 93
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.81 E-value=0.042 Score=56.93 Aligned_cols=181 Identities=15% Similarity=0.204 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 310 KELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLE 389 (896)
Q Consensus 310 keL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~E 389 (896)
..+.+|.....+|..+...|...+...+...+.|..++..|..++..++..+...+ . +++..++|+..+..++.+
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK-~----l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK-A----LEEELEDLKTLAKSLEEE 82 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHH
Confidence 34445666677777788888888888888888888888888888777764443332 2 222334444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002652 390 TQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVE 469 (896)
Q Consensus 390 l~eerkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~ 469 (896)
......... ...+....+...+..|++.-.++..+.+.++.+...+.....++...+..|+..+... ...+.
T Consensus 83 ~~~L~aq~r-qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~-------da~l~ 154 (193)
T PF14662_consen 83 NRSLLAQAR-QLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQR-------DAILS 154 (193)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 211111111 1112222333345555666667777777777777777766677777777776666655 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 470 ELENEIKKLREELESEKQAAREVAWAKVSGLELDI 504 (896)
Q Consensus 470 elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Ei 504 (896)
+....+..|..-|+.+. ...++++..+..|+..|
T Consensus 155 e~t~~i~eL~~~ieEy~-~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 155 ERTQQIEELKKTIEEYR-SITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55666666666666666 55555555555555443
No 94
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.80 E-value=0.16 Score=60.49 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLE 501 (896)
Q Consensus 448 reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE 501 (896)
..+...++.+...+..+.+++..+...+.+++.+|.... .|++++..+.-|.
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~s--DYeeIK~ELsiLk 357 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRS--DYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHH
Confidence 334444555666666667777777777777777777764 7888888776655
No 95
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.76 E-value=0.23 Score=60.96 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 436 TRERLVTSDNKVRLLETQVCKEQNVSASW--KKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAA 507 (896)
Q Consensus 436 lra~l~~lEkk~reLdk~LeEek~~~~~l--qkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka 507 (896)
.+..+..+-+++..++..|.+...++..+ ...+..+..++.+++.++.+.. ..+......+..+..+++..
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~-~~~~~~~~~~~~~~~~i~~~ 461 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSE-AEIEELLRQLETLKEAIEAL 461 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666665544332 2344444445555555555544 44444444444444444433
No 96
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.73 E-value=0.13 Score=57.14 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhh-hhhhhhccc
Q 002652 548 RQQEQLKAMQKTL-EDEENYENT 569 (896)
Q Consensus 548 k~~~qL~~lq~~L-EdEek~~s~ 569 (896)
.+-+.|+....+| =|++++|+.
T Consensus 286 al~R~lsesEsslE~ddEr~fne 308 (310)
T PF09755_consen 286 ALCRHLSESESSLEMDDERQFNE 308 (310)
T ss_pred HHHHHHHHHHHHHhcchHhhhcc
Confidence 5667778888777 344788874
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.71 E-value=0.12 Score=62.68 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 469 EELENEIKKLREELESEKQAAREVAWAKVSGLELDIL 505 (896)
Q Consensus 469 ~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie 505 (896)
..+-.+|.++-.-|.+++ ..+.++..-...|+.||.
T Consensus 487 s~Yt~RIlEIv~NI~KQk-~eI~KIl~DTr~lQkeiN 522 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQK-EEIEKILSDTRELQKEIN 522 (594)
T ss_pred HHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344444555555555555 555555555556666665
No 98
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.71 E-value=0.3 Score=60.85 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=13.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCCC
Q 002652 753 TAPSVHGENESPRSRDNNEEGP 774 (896)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~ 774 (896)
.+|+.|-=|---++|-+-.+|+
T Consensus 1041 i~pd~h~l~r~~~~r~~~~g~s 1062 (1195)
T KOG4643|consen 1041 ISPDFHALNRLLRSRNDFMGGS 1062 (1195)
T ss_pred CCCchhhhcccccchhhhhccc
Confidence 4677777776666665544443
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.71 E-value=0.13 Score=63.19 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISY--LHQLKVLRDMLDAKQKELAEISRISAE 321 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kkl--E~QLeELq~kLee~ekeL~el~~k~~k 321 (896)
++.|..+...|..+++....+-.+.=.+++......+.++.+.+....+.. ..+|+.....+...+.+++.....+..
T Consensus 335 ~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee 414 (980)
T KOG0980|consen 335 IEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEE 414 (980)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666665554443322222222222222333333332222111 112333333333333333334444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLS 398 (896)
Q Consensus 322 LEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~e 398 (896)
++...-....+.+.++..+.++......+-....+..++++....... +.++....|..+|.++..+...|..+.+
T Consensus 415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-~~~~~~~~L~d~le~~~~~~~~~~~K~e 490 (980)
T KOG0980|consen 415 AENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-DVEEENTNLNDQLEELQRAAGRAETKTE 490 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 666666666666666666666666666666666666666666554443 4445555555666655555444444444
No 100
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.70 E-value=0.0046 Score=76.24 Aligned_cols=84 Identities=19% Similarity=0.333 Sum_probs=63.9
Q ss_pred eeEEecCCceEecCCCCC--CceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCC-ceeecCccccCCCC
Q 002652 96 INILLTADEHCIGRLVDD--AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTN-GTYVNCERFKKNSS 172 (896)
Q Consensus 96 ~~i~L~~~~~~IGR~~~~--~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StN-GTfVNg~ri~kng~ 172 (896)
.-+.|.....+|||.+.. .||+++...|=-.||.|...+. ..++..-.+-+ -|||||..|.-
T Consensus 470 LlY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~g------------~~~vtl~p~e~aetyVNGk~v~e--- 534 (1221)
T KOG0245|consen 470 LLYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEGG------------NDVVTLEPCEDAETYVNGKLVTE--- 534 (1221)
T ss_pred EEEEeccCceecCCCCcccCCceEecchhhhhhceEEEecCC------------CceEEeccCCccceeEccEEcCC---
Confidence 345667788999998643 4899999999999999987653 01344444545 89999999976
Q ss_pred ccccCCCCEEEEccCCCCCccEEEEEcc
Q 002652 173 EVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (896)
Q Consensus 173 ~~~L~~GDvIsLa~dp~~~~af~FVF~d 200 (896)
+..|++||.|-||.+ -.|.|.+
T Consensus 535 p~qL~~GdRiilG~~------H~frfn~ 556 (1221)
T KOG0245|consen 535 PTQLRSGDRIILGGN------HVFRFNH 556 (1221)
T ss_pred cceeccCCEEEEcCc------eeEEecC
Confidence 689999999999963 2466655
No 101
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.089 Score=57.33 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002652 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (896)
Q Consensus 421 klr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe 479 (896)
.+...-..+..+++.+.+....++..+..|..+..+.+..+..+..+...+..+...|.
T Consensus 159 ~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 159 SLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333344555555666666667777777777777777777666666666666655555
No 102
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.62 E-value=0.33 Score=60.62 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHH-HHhhhhh-hhhhhcccccccccCCCCC----CC--cccccCccc--cccc
Q 002652 538 TTEEISVLFARQQEQLK-AMQKTLE-DEENYENTSVDIDLCVPDG----EN--SRTIVGEKL--PNGH 595 (896)
Q Consensus 538 k~EEiee~fkk~~~qL~-~lq~~LE-dEek~~s~~leld~~p~~k----rl--eamSGGEKs--~~~~ 595 (896)
-++.|+.+|.+.|..+- .|.-.|+ ++.++-.=++.|-|+=++- +| -.=||||.| ||-|
T Consensus 907 ~V~~In~~Fs~~F~~mg~aGeV~L~~~~~DydkwgI~ImVkFR~s~~L~~L~sh~QSGGERSVSTiLY 974 (1072)
T KOG0979|consen 907 MVEQINERFSQLFSSMGCAGEVSLEVNPLDYDKWGIMIMVKFRDSEGLKVLDSHRQSGGERSVSTILY 974 (1072)
T ss_pred HHHHHHHHHHHHHhhcccCceEEeccCcccHhHhceEEEEEEccCcccccccccccCCcchHHHHHHH
Confidence 34578888888888873 3666665 5566655555444322222 33 346899976 4444
No 103
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.35 Score=59.07 Aligned_cols=9 Identities=11% Similarity=0.486 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002652 468 VEELENEIK 476 (896)
Q Consensus 468 l~elE~Eir 476 (896)
+..++..+.
T Consensus 582 le~i~~~~~ 590 (698)
T KOG0978|consen 582 LEQIQEQYA 590 (698)
T ss_pred HHHHHHHHH
Confidence 333333333
No 104
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=97.61 E-value=5.9e-05 Score=81.58 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=70.5
Q ss_pred EEecCCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEe-CCCCceeecCccccCCCCcccc
Q 002652 98 ILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD-TSTNGTYVNCERFKKNSSEVNI 176 (896)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D-~StNGTfVNg~ri~kng~~~~L 176 (896)
|.+.+..|.|||+..-|||+|++..+||.|+.+..... ..++||.| .|+.||||-..||.+ .+...|
T Consensus 33 ~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkh-----------l~~~~lidl~s~hgtf~g~~rL~~-~~p~~l 100 (337)
T KOG1880|consen 33 IIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKH-----------LSRIFLIDLGSTHGTFLGNERLEP-HKPVQL 100 (337)
T ss_pred HhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhc-----------cceEEEEEccCCcceeeeeeeecc-CCCccc
Confidence 44556779999999888999999999999999887553 13699999 588899999999999 778889
Q ss_pred CCCCEEEEccCCCCCccEEEEEcc
Q 002652 177 DHGDIISFAAPPQHDLAFAFVFRD 200 (896)
Q Consensus 177 ~~GDvIsLa~dp~~~~af~FVF~d 200 (896)
..|-...|+... -.|.++.
T Consensus 101 ~i~~~~~fgasT-----r~y~lr~ 119 (337)
T KOG1880|consen 101 EIGSTFHFGAST-----RIYLLRE 119 (337)
T ss_pred cCCceEEEeccc-----eeeeeec
Confidence 999999998643 3466654
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.58 E-value=0.032 Score=60.05 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 243 DFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
.+..|-.++.+|.-.+......++.++.+.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~ 40 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAEL 40 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 106
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.28 Score=56.66 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 246 SLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 246 ~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
..++.+.-+-.++..+..+.+.+...|
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i 287 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKI 287 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444444444444
No 107
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.56 E-value=0.38 Score=58.20 Aligned_cols=11 Identities=9% Similarity=0.293 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 002652 242 DDFRSLQRSNT 252 (896)
Q Consensus 242 dkvr~Le~e~~ 252 (896)
..+..++..-.
T Consensus 60 ~~fe~w~~~w~ 70 (560)
T PF06160_consen 60 EKFEEWRQKWD 70 (560)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 108
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.52 E-value=0.24 Score=54.77 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 299 eELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
..+..+.+++-....++..+...+..+..+++.++.++.....+++..+..|-..+.++.
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444445555555555555555544444444444444
No 109
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.47 E-value=0.048 Score=58.69 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 366 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~ 366 (896)
++.+-..++.+.+.+......+.+++.+++.++..+.+++..+.++..++.+++.+|.++..++...+.
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777777778888888888888888888888888888888888887777755555443
No 110
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.66 Score=58.39 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 296 ~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
-++--+.+..++...++..+++.+.+++..++.-...+.........+.+++..+...+.+....|.+
T Consensus 220 ~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 220 WELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred HHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555555555555555555555556666666666666666655555
No 111
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.48 Score=55.66 Aligned_cols=76 Identities=20% Similarity=0.149 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 417 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAK 496 (896)
Q Consensus 417 E~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~k 496 (896)
....+++.++.+.+-+=.++-..+++++.+--.|++++.-.+. .+.+-.-+..+++.|.++++-+. ...+++...
T Consensus 149 ~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~----sQVEyEglkheikRleEe~elln-~q~ee~~~L 223 (772)
T KOG0999|consen 149 DQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ----SQVEYEGLKHEIKRLEEETELLN-SQLEEAIRL 223 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh----hhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344666666666666556666777777777777776665543 23444555666666666666665 444444443
Q ss_pred H
Q 002652 497 V 497 (896)
Q Consensus 497 i 497 (896)
.
T Consensus 224 k 224 (772)
T KOG0999|consen 224 K 224 (772)
T ss_pred H
Confidence 3
No 112
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.6 Score=56.49 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=5.9
Q ss_pred CCCCCCCCCC
Q 002652 642 GGFGSDIDGV 651 (896)
Q Consensus 642 ~~~~~~~~~~ 651 (896)
=||.-||.+.
T Consensus 638 ~Gykid~~~~ 647 (716)
T KOG4593|consen 638 LGYKIDFTLE 647 (716)
T ss_pred hhhhhhcccc
Confidence 3566666665
No 113
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.39 E-value=0.23 Score=51.64 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVE----------RHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~----------r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL 312 (896)
.|..|..++.-|+.+++.....+..+...+..... -++.......+++ ..++.|+++.++-.++..+..
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~-e~~e~qLkEAk~iaE~adrK~ 83 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKM-EAQEAQLKEAKHIAEKADRKY 83 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777776666666666555555421111 0111122333333 677888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 313 ~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
.+...++.-++.+++....+.+..++.+.+|..++..+.+.+..|.
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~ 129 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS 129 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 8888888888888888888888888888888888777766655554
No 114
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=97.38 E-value=0.31 Score=52.80 Aligned_cols=134 Identities=22% Similarity=0.354 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 347 MKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQV 426 (896)
Q Consensus 347 ik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~EKklr~el 426 (896)
+..+...+..|...|+.+...++...+.+...++..|.+|...++.+.++-.+............+..+++...
T Consensus 7 L~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~------ 80 (247)
T PF06705_consen 7 LASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVE------ 80 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 44666677778888888888888888788888888888888877776554442332222222223333322211
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 427 ESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS-WKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 427 EdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~-lqkel~elE~EireLe~ELE~~k 486 (896)
..+....+.+...+..+..++..|...+.+++..... +......+..++..|...+...+
T Consensus 81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er 141 (247)
T PF06705_consen 81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENER 141 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334445556666666666666666666554433 34444555566666666666655
No 115
>PF13514 AAA_27: AAA domain
Probab=97.37 E-value=0.97 Score=59.03 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=11.3
Q ss_pred ccCcccccccCCCccc
Q 002652 625 GQNTQEAEFTSGDRTC 640 (896)
Q Consensus 625 ~~~~~~~~~~~~~~~~ 640 (896)
+..+|-.=||.-.|.+
T Consensus 1080 s~~~QVI~FTch~~l~ 1095 (1111)
T PF13514_consen 1080 SRRRQVIYFTCHEHLV 1095 (1111)
T ss_pred ccCCeEEEEeccHHHH
Confidence 4567888888777663
No 116
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=97.33 E-value=0.49 Score=53.96 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhh-hhhhhhcccccc
Q 002652 548 RQQEQLKAMQKTL-EDEENYENTSVD 572 (896)
Q Consensus 548 k~~~qL~~lq~~L-EdEek~~s~~le 572 (896)
.+-+.|++-+..| =|+++|+++-+-
T Consensus 310 alcr~lsEsesslemdeery~Ne~~~ 335 (552)
T KOG2129|consen 310 ALCRMLSESESSLEMDEERYLNEFVD 335 (552)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhhhhc
Confidence 5667777777777 566888887664
No 117
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.34 Score=59.16 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLE 501 (896)
Q Consensus 425 elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE 501 (896)
++..++.++...+.+...+-.+..++-..++........+..+..-.+.++-.|..++.... +...++.+++.+|+
T Consensus 807 ~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~-nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN-NLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh-hHHHHHhhhhhhHH
Confidence 34455555555555555555555555555555544444444455555555555555555555 55555555665665
No 118
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.66 Score=54.56 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002652 402 SRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE 481 (896)
Q Consensus 402 ~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~E 481 (896)
..+|-+++..+++++......+.+.+.+.....++.......+.....|...|.+.+-.-+.+-.+-.+++.+--.|+..
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45555555555555555555555555555555555555555566666666666666555555555666666665555555
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHH
Q 002652 482 LESEKQ--AAREVAWAKVSGLELDIL 505 (896)
Q Consensus 482 LE~~k~--~~~Ee~~~ki~~LE~Eie 505 (896)
+..+++ .+++.++--|..|+.+++
T Consensus 186 Vs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 186 VSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 555442 256666666666665554
No 119
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.31 Score=59.54 Aligned_cols=8 Identities=0% Similarity=0.219 Sum_probs=2.9
Q ss_pred hhhHHHHH
Q 002652 270 NENRVVVE 277 (896)
Q Consensus 270 ~ei~~ir~ 277 (896)
.+|+.+..
T Consensus 660 ~kyK~lI~ 667 (970)
T KOG0946|consen 660 QKYKGLIR 667 (970)
T ss_pred HHHHHHHH
Confidence 33333333
No 120
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.27 E-value=0.54 Score=53.25 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 280 EKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (896)
Q Consensus 280 E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~ 338 (896)
.+|+...+.+. +..+.++.+++..+.....++..+.++...++..+..|..+-..++.
T Consensus 108 ~~El~~~r~e~-~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a 165 (499)
T COG4372 108 RSELQKARQER-EAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 45556666666666666655555555555555544444444333333
No 121
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.45 Score=52.00 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 300 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 300 ELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+++......+.+|..|..++.++.+++.++..++......+..++.+|..++..|.+.+
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333
No 122
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.23 E-value=0.67 Score=53.64 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 307 AKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 307 e~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
.++....-+......|+....+.-..|+.+...+...+.+++.|+..+.+|..++..
T Consensus 306 ~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 306 ALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 333333334444444444444444445555555555555555666555555555544
No 123
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.23 E-value=1.3 Score=56.73 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=8.8
Q ss_pred Hhhhhcc--ChhhHhhcCC
Q 002652 808 CEMIGIV--TPELKVQFGG 824 (896)
Q Consensus 808 ~~~~~~~--~~~~~~~~~~ 824 (896)
..||||| +|+|+..++-
T Consensus 873 ~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 873 GRQIIIISHVEELKERADV 891 (908)
T ss_pred CCeEEEEeChHHHHHhCCe
Confidence 3456665 3556644443
No 124
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.11 E-value=0.28 Score=50.97 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 246 SLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS--ISYLHQLKVLRDMLDAKQKELAEISRISAEQK 323 (896)
Q Consensus 246 ~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~--kklE~QLeELq~kLee~ekeL~el~~k~~kLE 323 (896)
+|..++..|...++.....-..|..++..++..+ ..+...+. +.+...+.+|+.-+..++.....+.++...++
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~----~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlE 94 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQL----KSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLE 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444442 22222221 33444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 324 HEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (896)
Q Consensus 324 sEleEL~eqLee~e~~~~eLekeik~LE~eI~E 356 (896)
.+...|...|..+......+..+...++..+.+
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 444444444444444444444444444433333
No 125
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.10 E-value=1.2 Score=53.96 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
....+..++..+..|...|.....+...+...++.+-.++..-...|++
T Consensus 347 ~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleE 395 (786)
T PF05483_consen 347 HSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEE 395 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Confidence 3334444444444444445444444445555444444444444434443
No 126
>PRK09039 hypothetical protein; Validated
Probab=97.09 E-value=0.11 Score=59.08 Aligned_cols=41 Identities=7% Similarity=0.094 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Q 002652 414 KLQIAEKQSSLQVESLKLKLDETRER-LVTSDNKVRLLETQV 454 (896)
Q Consensus 414 KLqE~EKklr~elEdLq~eLE~lra~-l~~lEkk~reLdk~L 454 (896)
..+...+..+..++++..+|+.+.+. +.++..=..+|...|
T Consensus 162 ~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 162 ASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333344444455555555554433 444444444444443
No 127
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.06 E-value=0.13 Score=51.44 Aligned_cols=29 Identities=24% Similarity=0.161 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002652 429 LKLKLDETRERLVTSDNKVRLLETQVCKE 457 (896)
Q Consensus 429 Lq~eLE~lra~l~~lEkk~reLdk~LeEe 457 (896)
+..+|..+...+..++++++.|+.....|
T Consensus 99 ~~ekl~e~d~~ae~~eRkv~~le~~~~~~ 127 (143)
T PF12718_consen 99 TTEKLREADVKAEHFERKVKALEQERDQW 127 (143)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 33344444444444444455544444444
No 128
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.04 E-value=1.9 Score=55.25 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002652 336 SMQSCTEANEIMKSQKVT 353 (896)
Q Consensus 336 ~e~~~~eLekeik~LE~e 353 (896)
....+..+...+..+...
T Consensus 327 ~~~~~~~~~~~~~~l~~~ 344 (908)
T COG0419 327 LEERLEKLEEKLEKLESE 344 (908)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 129
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.00 E-value=2.3 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002652 250 SNTELRKQLESQVLEIDKLRNENRVV 275 (896)
Q Consensus 250 e~~eL~~qlee~~~~i~~Lr~ei~~i 275 (896)
.+.+|..++..+...+..+..++..+
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l 768 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRAL 768 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 130
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.00 E-value=0.61 Score=49.00 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002652 427 ESLKLKLDETRERLVTSDNKVRLLETQVC 455 (896)
Q Consensus 427 EdLq~eLE~lra~l~~lEkk~reLdk~Le 455 (896)
+.|..+|+.+...+...++++..|++.++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555544444443
No 131
>PRK09039 hypothetical protein; Validated
Probab=96.96 E-value=0.21 Score=56.71 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELE 483 (896)
Q Consensus 424 ~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE 483 (896)
.+++.|+..|..+++.+...+.+.++.+.+|++.+..+..+ +...-.++..++.+++
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a---~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA---LAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHH
Confidence 33444444444444455555544455544544443333222 2222334455555553
No 132
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.93 E-value=1.4 Score=52.09 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002652 442 TSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFE 514 (896)
Q Consensus 442 ~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~E 514 (896)
.+++++++|.+.+.+.......-...-..++..+..+...|.... ..++.+.+.+.+|..+=-.|+..++.-
T Consensus 351 ~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~-~~q~~~~e~L~~LrkdEl~Are~l~~~ 422 (570)
T COG4477 351 KFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIE-DEQEKVQEHLTSLRKDELEARENLERL 422 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333333444444555555555544 455555555555554333344444333
No 133
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.90 E-value=1.1 Score=50.39 Aligned_cols=72 Identities=29% Similarity=0.350 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 425 QVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKV 497 (896)
Q Consensus 425 elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki 497 (896)
.+..+...-..++.++..+-.+..+|...|..-...+..+.+++..+...++.|+.+-...+ .-.+.....+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k-~k~e~~n~~l 274 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWK-SKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHH
Confidence 44555555556777777777888888888877777777777778877777777777777766 5444444444
No 134
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.84 E-value=2.9 Score=54.35 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 002652 537 STTEEISVLFARQQEQLKAMQKTLEDEENYEN 568 (896)
Q Consensus 537 ek~EEiee~fkk~~~qL~~lq~~LEdEek~~s 568 (896)
..+..++++|++.+-+|......-+|=.+|..
T Consensus 1081 ~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~ 1112 (1294)
T KOG0962|consen 1081 KDFKDAEKNYRKALIELKTTELSNKDLDKYYK 1112 (1294)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888776655555455544
No 135
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.84 E-value=1.2 Score=49.79 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 002652 465 KKRVEELENEIKKL 478 (896)
Q Consensus 465 qkel~elE~EireL 478 (896)
...+.+.+.+++.+
T Consensus 289 ~~mL~EaQEElk~l 302 (306)
T PF04849_consen 289 MAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
No 136
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.80 E-value=1.3 Score=49.76 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 305 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (896)
Q Consensus 305 Lee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~E 356 (896)
+...++....+...+..++.++.........++..|.+|.+..+.+......
T Consensus 45 ~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~ 96 (309)
T PF09728_consen 45 LKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKR 96 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555566665555555555566666666555555543333
No 137
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.76 E-value=0.47 Score=54.33 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQ 261 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~ 261 (896)
.++..|+..+..|+.++..+
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARL 100 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35556666666665555443
No 138
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.68 E-value=1.7 Score=49.42 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=8.5
Q ss_pred cccCCCCCcccc--chh
Q 002652 720 SQLNNPLSQKTM--EDT 734 (896)
Q Consensus 720 ~~~~~~~~~~~~--~~~ 734 (896)
++-.+|++.+.| |||
T Consensus 461 ~qad~P~e~~aiAaedt 477 (499)
T COG4372 461 SQADTPSERSAIAAEDT 477 (499)
T ss_pred HhcCCcccccCCCCCCC
Confidence 345666666654 553
No 139
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.64 E-value=0.0011 Score=81.76 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
+..++.+++.++...+..+..+...+..++.+++.+..++.+.+..+.
T Consensus 169 l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~ 216 (722)
T PF05557_consen 169 LKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQ 216 (722)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444433333333
No 140
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.63 E-value=0.00048 Score=84.92 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVE 277 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~ 277 (896)
++.|+.++.++...+..+...+..++.++..++.
T Consensus 248 l~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q 281 (713)
T PF05622_consen 248 LRRLREELERLEEQRDDLKIELEELEKEIDELRQ 281 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333
No 141
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.63 E-value=0.00048 Score=84.91 Aligned_cols=7 Identities=0% Similarity=-0.401 Sum_probs=0.0
Q ss_pred CCccccc
Q 002652 581 ENSRTIV 587 (896)
Q Consensus 581 rleamSG 587 (896)
|+.+.||
T Consensus 678 r~~~~~~ 684 (713)
T PF05622_consen 678 RLAALSG 684 (713)
T ss_dssp -------
T ss_pred hcccCCC
Confidence 7777765
No 142
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.61 E-value=1.6 Score=54.55 Aligned_cols=98 Identities=18% Similarity=0.302 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 407 EQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 407 Elee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k 486 (896)
.+.+.+.++......+...+.....+++.++.++.+++..+..|...|...+.....+...+......++.+...+....
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e 672 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44445555555556666666677777777777777777777777777776666665666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002652 487 QAAREVAWAKVSGLELDIL 505 (896)
Q Consensus 487 ~~~~Ee~~~ki~~LE~Eie 505 (896)
.....+..++..|+.||+
T Consensus 673 -~E~~~l~~Ki~~Le~Ele 690 (769)
T PF05911_consen 673 -AEAEELQSKISSLEEELE 690 (769)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 666677777777777776
No 143
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.55 E-value=0.013 Score=72.74 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=13.5
Q ss_pred cccccccCCCCC-CCccc
Q 002652 569 TSVDIDLCVPDG-ENSRT 585 (896)
Q Consensus 569 ~~leld~~p~~k-rleam 585 (896)
.||++++.|-++ ||.+|
T Consensus 644 lGyki~~~~~~~~rl~S~ 661 (722)
T PF05557_consen 644 LGYKIDFMPNGRVRLTSM 661 (722)
T ss_dssp HSEEEEEETTTEEEEEET
T ss_pred hcceeeecCCCeEEEEec
Confidence 577899988888 77766
No 144
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.52 E-value=3.2 Score=50.63 Aligned_cols=15 Identities=0% Similarity=0.370 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhhh
Q 002652 548 RQQEQLKAMQKTLED 562 (896)
Q Consensus 548 k~~~qL~~lq~~LEd 562 (896)
.+.+++++|+..|+-
T Consensus 575 ~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 575 TISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.46 E-value=0.37 Score=60.08 Aligned_cols=12 Identities=17% Similarity=-0.260 Sum_probs=8.2
Q ss_pred ccccCc-cccccc
Q 002652 584 RTIVGE-KLPNGH 595 (896)
Q Consensus 584 amSGGE-Ks~~~~ 595 (896)
+-.||| ||++..
T Consensus 553 s~~~G~GKTt~a~ 565 (754)
T TIGR01005 553 RPRPVLGKSDIEA 565 (754)
T ss_pred cCCCCCChhHHHH
Confidence 334888 888766
No 146
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.44 E-value=2.1 Score=47.49 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 411 VINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 411 ~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
.+-......++...-++.++.+|..++.++.+++.-...=..++..--.+...++.++..++.+-.=|+..|+.
T Consensus 166 elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 166 ELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555556667777777766665555554333333333333333334444445555444444444444
No 147
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.43 E-value=1.3 Score=47.62 Aligned_cols=136 Identities=14% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002652 303 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAA 382 (896)
Q Consensus 303 ~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~q 382 (896)
.....+..++.+.+.--.+++. +|..+|..++.++.+|....++|.-+..-++..++..+-+-+.. +..|...
T Consensus 27 q~f~~~reEl~EFQegSrE~Ea---elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q----~s~Ledd 99 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEA---ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ----ESQLEDD 99 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3344444555555555555555 34566666777777777666666665555554444433221111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002652 383 VQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQ 453 (896)
Q Consensus 383 Iqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~ 453 (896)
++... .+.+.....+++++..-..|+..++..-..++++..+|..+-..++-|+-++.+-+..
T Consensus 100 lsqt~--------aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~l 162 (333)
T KOG1853|consen 100 LSQTH--------AIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVL 162 (333)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 11111 1222233444455544444555555555567777777777766666666555443333
No 148
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.41 E-value=2.4 Score=47.91 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
.-+.-++-...+|...+..-+..+..++.++
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEET 98 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777766666666655565555
No 149
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.40 E-value=3.7 Score=50.06 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------------HHHHHHHHHHHhhHHHHH
Q 002652 411 VINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKV---------------RLLETQVCKEQNVSASWK 465 (896)
Q Consensus 411 ~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~---------------reLdk~LeEek~~~~~lq 465 (896)
.+.+|++...-+..-++=|+..+..+..-+.--++++ +++...|..|+.++-.|-
T Consensus 250 tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLm 319 (739)
T PF07111_consen 250 TVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALM 319 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3444443333444445555555554443333333333 566777888877776664
No 150
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.39 E-value=4.1 Score=50.49 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
..+|..|+.++..++..+.....+.++|...+
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~ 64 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLN 64 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443
No 151
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.38 E-value=2.9 Score=48.66 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 317 RISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 317 ~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
.-+.+|+.-+++|.+.--...-...++.+.++.|...+.+.++.|.+
T Consensus 362 DiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqE 408 (527)
T PF15066_consen 362 DIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQE 408 (527)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433332222222234444444444444444444444
No 152
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.36 E-value=2.1 Score=46.78 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEID 266 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~ 266 (896)
.+..++.|...+..+..++......+.
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~~~ 41 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSKLN 41 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccch
Confidence 456677777777777766666555533
No 153
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.36 E-value=1.7 Score=45.71 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002652 421 QSSLQVESLKLKLDETRERLVTSDNKV----RLLETQVCKEQNVSASWKKRVEELENEIKKLREEL 482 (896)
Q Consensus 421 klr~elEdLq~eLE~lra~l~~lEkk~----reLdk~LeEek~~~~~lqkel~elE~EireLe~EL 482 (896)
++...|+.+..+++.....+..|++.+ +.|..++.-++.+...++.++..+..++..|...|
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666665544 56666677775555555555555554544444433
No 154
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=96.33 E-value=2.5 Score=48.85 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQ 261 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~ 261 (896)
.+.++.+|..++.+|+.+++..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999998888775
No 155
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.30 E-value=0.79 Score=54.27 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 243 DFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
-...|+.++.+++.+++.....+...+.+.
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356677777777777777777766665544
No 156
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.30 E-value=4.9 Score=50.37 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 251 NTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLN 330 (896)
Q Consensus 251 ~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~ 330 (896)
+..++.++..+-..++..=++++.+|+..+..+.++--+..+.++.--.+|..+|.++.+. +.++..+...|.
T Consensus 40 ~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~-------l~~~~~e~~~l~ 112 (769)
T PF05911_consen 40 KLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKR-------LAESAAENSALS 112 (769)
T ss_pred hHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHH
Confidence 3344444444455556666666777777777777777666555555444555555555444 444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 331 DRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 331 eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
..|.+-...+.+|.+.+...+.++..|...|+.
T Consensus 113 ~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~ 145 (769)
T PF05911_consen 113 KALQEKEKLIAELSEEKSQAEAEIEDLMARLES 145 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555555555556666666666665555554444
No 157
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.29 E-value=1.8 Score=45.26 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=17.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002652 435 ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREE 481 (896)
Q Consensus 435 ~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~E 481 (896)
.+......++..++.+..+|.+-......+.+.+..++.++..|+..
T Consensus 134 ~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~k 180 (205)
T KOG1003|consen 134 KLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEK 180 (205)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHh
Confidence 33333333444444444444433333333333333333333333333
No 158
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.25 E-value=7.5 Score=52.03 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELR 255 (896)
Q Consensus 242 dkvr~Le~e~~eL~ 255 (896)
..|..|...+..+.
T Consensus 220 ~~i~~l~e~~~~~~ 233 (1353)
T TIGR02680 220 DELTDVADALEQLD 233 (1353)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 159
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.24 E-value=2.1 Score=45.52 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 308 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 308 ~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
.++........+.++..+...+...|..++....+|-+...+++..|..++
T Consensus 60 ~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k 110 (207)
T PF05010_consen 60 KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYK 110 (207)
T ss_pred HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555555555555555555555555555555555555544
No 160
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.24 E-value=0.64 Score=58.05 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAE 314 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~e 314 (896)
=+..|+.+++.+++..+.++..
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~ 219 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAA 219 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666554
No 161
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.23 E-value=0.2 Score=59.36 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 429 LKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKV 497 (896)
Q Consensus 429 Lq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki 497 (896)
+...+..+++.+..+..++..|.+++++.+..... +-..+.++..|+.+++..+ ..++.+..+.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~----~~~~~~el~~L~Re~~~~~-~~Y~~l~~r~ 378 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRT----IPEVEAELTQLNRDYEVNK-SNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44444444445555555555555554444333321 2333444445554444444 3333333333
No 162
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.19 E-value=6.9 Score=51.06 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=6.2
Q ss_pred CCcccccCccc
Q 002652 581 ENSRTIVGEKL 591 (896)
Q Consensus 581 rleamSGGEKs 591 (896)
.+..|||||+-
T Consensus 946 ~~~~LSgGe~~ 956 (1047)
T PRK10246 946 DTRTLSGGESF 956 (1047)
T ss_pred CcccCCHHHHH
Confidence 44556666643
No 163
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=5.4 Score=49.17 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhh
Q 002652 548 RQQEQLKAMQKTL 560 (896)
Q Consensus 548 k~~~qL~~lq~~L 560 (896)
.++.++..+...|
T Consensus 605 rleEE~e~L~~kl 617 (698)
T KOG0978|consen 605 RLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 164
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.08 E-value=2.8 Score=50.76 Aligned_cols=13 Identities=15% Similarity=-0.225 Sum_probs=9.6
Q ss_pred cccccCccccccc
Q 002652 583 SRTIVGEKLPNGH 595 (896)
Q Consensus 583 eamSGGEKs~~~~ 595 (896)
..+||||++-+..
T Consensus 439 ~~lSgGe~~rv~l 451 (563)
T TIGR00634 439 KVASGGELSRVML 451 (563)
T ss_pred hhcCHhHHHHHHH
Confidence 5789999885544
No 165
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=4.5 Score=47.97 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDL 329 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL 329 (896)
++...+.|..+++.++..+.+....+..++.....|
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassL 371 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSL 371 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444343333333333333
No 166
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.04 E-value=5.6 Score=48.69 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHE 280 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E 280 (896)
-++|..|......+.....-++..+.+.+.++.++.+++.
T Consensus 615 ~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~ 654 (1104)
T COG4913 615 DAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQAN 654 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4889999999999998888899999999999877777744
No 167
>PRK11281 hypothetical protein; Provisional
Probab=95.99 E-value=8.5 Score=50.31 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=10.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 002652 534 AFYSTTEEISVLFARQQEQLKAMQKTL 560 (896)
Q Consensus 534 a~iek~EEiee~fkk~~~qL~~lq~~L 560 (896)
+.+...-.++-+.+.+...+.+++..|
T Consensus 425 ~~l~~~~~l~~~q~Ql~~~~~~l~~~L 451 (1113)
T PRK11281 425 NQLNLAINLQLNQQQLLSVSDSLQSTL 451 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444333
No 168
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.96 E-value=4.3 Score=46.64 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQ 261 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~ 261 (896)
.+|..|..+|..|..+++.+
T Consensus 50 ~rv~slsq~Nkvlk~elet~ 69 (552)
T KOG2129|consen 50 ARVSSLSQRNKVLKGELETL 69 (552)
T ss_pred HHHHHHHhhhhhhhhhHHhh
Confidence 44555666665555555444
No 169
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.95 E-value=2.8 Score=44.53 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 465 KKRVEELENEIKKLREELESEKQAAREVAWAKVSGLEL 502 (896)
Q Consensus 465 qkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~ 502 (896)
++.++-.+.++..|...|+.-. ...+++....+.|..
T Consensus 167 qa~lkk~e~~~~SLe~~LeQK~-kEn~ELtkICDeLI~ 203 (207)
T PF05010_consen 167 QASLKKEEMKVQSLEESLEQKT-KENEELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444444445555555554444 444444444444443
No 170
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.93 E-value=5.6 Score=47.77 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002652 297 QLKVLRDMLDAKQKELA 313 (896)
Q Consensus 297 QLeELq~kLee~ekeL~ 313 (896)
.++.|+.++.+++..+.
T Consensus 156 ~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 156 APRSLQEKLSLLDEALK 172 (511)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 34556666666655555
No 171
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.91 E-value=9.1 Score=49.96 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=9.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHh
Q 002652 534 AFYSTTEEISVLFARQQEQLKAMQ 557 (896)
Q Consensus 534 a~iek~EEiee~fkk~~~qL~~lq 557 (896)
+.+...-.++-+.+.....+.+++
T Consensus 401 ~~l~~l~~L~~~q~QL~~~~~~l~ 424 (1109)
T PRK10929 401 TLILELTKLKVANSQLEDALKEVN 424 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444
No 172
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.87 E-value=2.9 Score=47.81 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 246 SLQRSNTELRKQLESQVLEIDKL 268 (896)
Q Consensus 246 ~Le~e~~eL~~qlee~~~~i~~L 268 (896)
.+..++..|+.++..+...+..+
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARL 100 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555665555555444433
No 173
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.83 E-value=4.4 Score=49.12 Aligned_cols=7 Identities=29% Similarity=0.563 Sum_probs=3.1
Q ss_pred eecCccc
Q 002652 161 YVNCERF 167 (896)
Q Consensus 161 fVNg~ri 167 (896)
||||..+
T Consensus 110 ~iNg~~v 116 (563)
T TIGR00634 110 YLNGKPV 116 (563)
T ss_pred EECCEEc
Confidence 4444444
No 174
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.81 E-value=3.4 Score=50.66 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 305 LDAKQKELAEISRISAEQKHEMEDLNDRL 333 (896)
Q Consensus 305 Lee~ekeL~el~~k~~kLEsEleEL~eqL 333 (896)
+++.......|...+..++.++++|-..|
T Consensus 56 ve~a~~~~~~L~~~ia~~eael~~l~s~l 84 (660)
T KOG4302|consen 56 VEEASESKARLLQEIAVIEAELNDLCSAL 84 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344444444444444444443
No 175
>PRK10869 recombination and repair protein; Provisional
Probab=95.75 E-value=6 Score=47.99 Aligned_cols=13 Identities=15% Similarity=-0.138 Sum_probs=9.8
Q ss_pred cccccCccccccc
Q 002652 583 SRTIVGEKLPNGH 595 (896)
Q Consensus 583 eamSGGEKs~~~~ 595 (896)
..+||||++-+..
T Consensus 429 k~lSgGe~~Ri~L 441 (553)
T PRK10869 429 KVASGGELSRIAL 441 (553)
T ss_pred hhCCHHHHHHHHH
Confidence 5789999886654
No 176
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.70 E-value=11 Score=49.31 Aligned_cols=18 Identities=11% Similarity=0.239 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002652 243 DFRSLQRSNTELRKQLES 260 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee 260 (896)
.+..+......+..+...
T Consensus 531 ~l~~~~~~~~~~~~~~~~ 548 (1047)
T PRK10246 531 RLDALEKEVKKLGEEGAA 548 (1047)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 177
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.64 E-value=3 Score=48.58 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhHH
Q 002652 349 SQKVTIDELKTQLD 362 (896)
Q Consensus 349 ~LE~eI~ELe~qLE 362 (896)
.+..++.+++.+|.
T Consensus 258 ~l~~~l~~le~~l~ 271 (444)
T TIGR03017 258 NLKTDIARAESKLA 271 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 178
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.55 E-value=5.7 Score=48.55 Aligned_cols=13 Identities=23% Similarity=0.153 Sum_probs=7.3
Q ss_pred CCCCcCccccccc
Q 002652 605 SSGEASTTEKHDC 617 (896)
Q Consensus 605 ~~~~~~~~~~~~~ 617 (896)
||.++..+++-|-
T Consensus 413 ~si~~~~~~s~~~ 425 (916)
T KOG0249|consen 413 SSIDSGLRNSSDR 425 (916)
T ss_pred ccccchhcccccc
Confidence 5566666655543
No 179
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=7.5 Score=46.24 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 002652 500 LELDILAATRDLDFERRRLKA 520 (896)
Q Consensus 500 LE~Eieka~reLE~Ek~rLq~ 520 (896)
|..+|++.+..++.-+.|++.
T Consensus 519 l~~alektkQel~~tkarl~s 539 (654)
T KOG4809|consen 519 LMNALEKTKQELDATKARLAS 539 (654)
T ss_pred HHHHHHHHhhChhhhhhHHHH
Confidence 334555566666665555543
No 180
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.50 E-value=2.2 Score=51.10 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=25.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 227 LKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLE 264 (896)
Q Consensus 227 ~sG~~~sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~ 264 (896)
|++...|.++++.--+++++|+.-...|.-|+.-+.+.
T Consensus 96 p~~~~~s~~~~~~yQerLaRLe~dkesL~LQvsvLteq 133 (861)
T KOG1899|consen 96 PSMSTVSCPEYPEYQERLARLEMDKESLQLQVSVLTEQ 133 (861)
T ss_pred CCCCCccCCcchHHHHHHHHHhcchhhheehHHHHHHH
Confidence 45555677888777788888777777776555554444
No 181
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.49 E-value=5.8 Score=44.76 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002652 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLRE 480 (896)
Q Consensus 445 kk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ 480 (896)
+++.++..++......+.....+..++..+|.+++.
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444443
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.48 E-value=2.8 Score=41.22 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 319 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 319 ~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+..++.++..+...+......+..+...+..+.....+.+
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq 44 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ 44 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333333333
No 183
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=95.44 E-value=8 Score=46.05 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=15.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHh
Q 002652 534 AFYSTTEEISVLFARQQEQLKAMQ 557 (896)
Q Consensus 534 a~iek~EEiee~fkk~~~qL~~lq 557 (896)
.|+..+..+....+....+|+...
T Consensus 444 ~~l~l~~~~~~~i~~l~~eLse~p 467 (570)
T COG4477 444 TFLSLFFTAGHEIQDLMKELSEVP 467 (570)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcC
Confidence 455666666667777777775543
No 184
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.43 E-value=4.9 Score=43.57 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 322 QKHEMEDLNDRLSASMQ-SCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQE 392 (896)
Q Consensus 322 LEsEleEL~eqLee~e~-~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~e 392 (896)
++..+..+...+...-. ....+...+..|...|..|...+.+++..+....+.....|...|..+..-+..
T Consensus 68 ~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 68 FEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333322 334555566666666666766666766666555555555555555554444443
No 185
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.41 E-value=14 Score=48.53 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 439 RLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 439 ~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k 486 (896)
.+..++.+++++++.+.....++.++. +.....+...|..+.+.+.
T Consensus 1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~ 1054 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLS 1054 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhh
Confidence 334444555555555444433332222 3333334444444444433
No 186
>PF13166 AAA_13: AAA domain
Probab=95.22 E-value=11 Score=46.56 Aligned_cols=31 Identities=10% Similarity=-0.099 Sum_probs=22.2
Q ss_pred ccccccccCCCCCCCcccccCcccccccccC
Q 002652 568 NTSVDIDLCVPDGENSRTIVGEKLPNGHHSN 598 (896)
Q Consensus 568 s~~leld~~p~~krleamSGGEKs~~~~~~~ 598 (896)
...|.+......+...-||-|||.++.+--+
T Consensus 484 ~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yF 514 (712)
T PF13166_consen 484 DKGYKLQRKGGSKPAKILSEGEKRAIAFAYF 514 (712)
T ss_pred CCeEEEEECCCCcccCccCHHHHHHHHHHHH
Confidence 4556666654334678999999999998443
No 187
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.99 E-value=4 Score=40.11 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 243 DFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
++..|..++..+......+...+..++.++
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl 33 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDL 33 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444443
No 188
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.97 E-value=7.6 Score=45.78 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 465 KKRVEELENEIKKLREELESE 485 (896)
Q Consensus 465 qkel~elE~EireLe~ELE~~ 485 (896)
+.++..++.++..++..+...
T Consensus 297 ~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 297 NQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 555555566666666666554
No 189
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=94.90 E-value=4.1 Score=41.64 Aligned_cols=118 Identities=12% Similarity=0.283 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS-------ISYLHQLKVLRDMLDAKQKELAE 314 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~-------kklE~QLeELq~kLee~ekeL~e 314 (896)
..+..|.+++.+++.++...+...+.|+...+..+.+ |.++..... +..-.+..+++.+|..++.+-..
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~r----L~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q 102 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQR----LAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888777 666655552 34444466666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
|..+...|+..+..|...++.++.....+.-.+.=|...+..+...|++
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666666666666666666666666665555555555555555544443
No 190
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.89 E-value=6.9 Score=47.85 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 471 LENEIKKLREELESE 485 (896)
Q Consensus 471 lE~EireLe~ELE~~ 485 (896)
+..++..+...++.+
T Consensus 221 L~~e~~s~kk~l~~~ 235 (916)
T KOG0249|consen 221 LEQELESVKKQLEEM 235 (916)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 191
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.86 E-value=16 Score=46.45 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
+.....+..+..|+.++.....+++.++..+
T Consensus 629 ~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~ 659 (1072)
T KOG0979|consen 629 ELDNRIEEEIQKLKAEIDIRSSTLRELEEKK 659 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3334455555566666666655555555544
No 192
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.86 E-value=10 Score=44.01 Aligned_cols=49 Identities=6% Similarity=-0.059 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
|...+.-++.--.-|...+..+..++..+......|+..+.+....+.-
T Consensus 121 L~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~I 169 (384)
T PF03148_consen 121 LLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEI 169 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555666666666666666666666665544433
No 193
>PRK10869 recombination and repair protein; Provisional
Probab=94.85 E-value=13 Score=45.21 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 002652 538 TTEEISVLFARQQEQL 553 (896)
Q Consensus 538 k~EEiee~fkk~~~qL 553 (896)
....+...|++....|
T Consensus 360 ~A~~LS~~R~~aA~~l 375 (553)
T PRK10869 360 TAQKLHQSRQRYAKEL 375 (553)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 194
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.81 E-value=8.7 Score=43.10 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 465 KKRVEELENEIKKLREELESE 485 (896)
Q Consensus 465 qkel~elE~EireLe~ELE~~ 485 (896)
..++..++.+++.+-.+-+++
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 333344444444444333333
No 195
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.71 E-value=12 Score=46.57 Aligned_cols=11 Identities=36% Similarity=0.450 Sum_probs=7.4
Q ss_pred CCceEEEEeCC
Q 002652 146 GCSSVCLKDTS 156 (896)
Q Consensus 146 ~~~~~~L~D~S 156 (896)
+.-++||.|+.
T Consensus 242 gLPIVtLVDTp 252 (762)
T PLN03229 242 GFPIVTFIDTP 252 (762)
T ss_pred CCCEEEEEECC
Confidence 33478888863
No 196
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=94.65 E-value=0.11 Score=60.41 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=60.9
Q ss_pred CcceeEEecCCceEec-CCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecC--ccccC
Q 002652 93 HQGINILLTADEHCIG-RLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNC--ERFKK 169 (896)
Q Consensus 93 ~~g~~i~L~~~~~~IG-R~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg--~ri~k 169 (896)
..|..+.|....|+|| +...| |+++.++.||+.||.|..... .++|.+ +..+.++|| .....
T Consensus 10 ~~G~~~~L~~g~~~iG~~~~~~-di~L~d~~~~~~h~~l~v~~~-------------~~~l~~-~~~~~~~~g~~~~~~~ 74 (410)
T TIGR02500 10 HRGAELPLPEGNLVLGTDAADC-DIVLSDGGIAAVHVSLHVRLE-------------GVTLAG-AVEPAWEEGGVLPDEE 74 (410)
T ss_pred CCCcEEECCCCceEeccCCCCc-EEEeCCCCccchheEEEEcCc-------------eEEEec-CCcceeECCcccccCC
Confidence 3567899999999999 99988 999999999999999988642 256664 356788999 55544
Q ss_pred CCCccccCCCCEEEEccCCCCCccEEEEEcc
Q 002652 170 NSSEVNIDHGDIISFAAPPQHDLAFAFVFRD 200 (896)
Q Consensus 170 ng~~~~L~~GDvIsLa~dp~~~~af~FVF~d 200 (896)
+ ..|..+-.|.++. ..|+|+.
T Consensus 75 -g--~~l~~~~~l~~g~-------~~~~~g~ 95 (410)
T TIGR02500 75 -G--TPLPSGTPLLVAG-------VAFALGE 95 (410)
T ss_pred -C--CccCCCCceecce-------eEEeccC
Confidence 3 3455566666552 3566665
No 197
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.57 E-value=7.4 Score=41.18 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 372 RENAEADLKAAVQKSQLETQEKLK 395 (896)
Q Consensus 372 LEe~~~eLk~qIqkl~~El~eerk 395 (896)
|+..+..|...+.+-..++.+++.
T Consensus 148 LEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544444444433
No 198
>PF13514 AAA_27: AAA domain
Probab=94.34 E-value=25 Score=46.29 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=6.9
Q ss_pred CCcccccCcc
Q 002652 581 ENSRTIVGEK 590 (896)
Q Consensus 581 rleamSGGEK 590 (896)
-++.||+|-+
T Consensus 1022 ~~~~LS~GT~ 1031 (1111)
T PF13514_consen 1022 PVEELSRGTR 1031 (1111)
T ss_pred eHHHhCHHHH
Confidence 6677887754
No 199
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.33 E-value=16 Score=44.16 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002652 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 523 (896)
Q Consensus 445 kk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~re 523 (896)
.++.+.+.+|...+...-++...+.++-.-..++..+|..+. .....+..|+.++.++...|......|...|.
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~-----~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD-----NSEESLEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655555555555555555555555555544 34445556666666666666666666544443
No 200
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=94.30 E-value=0.076 Score=62.06 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=64.8
Q ss_pred EEecCCceEecCCCCCCceecC------CCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCC
Q 002652 98 ILLTADEHCIGRLVDDAHFQID------SNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNS 171 (896)
Q Consensus 98 i~L~~~~~~IGR~~~~~di~i~------~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~ri~kng 171 (896)
+.+.+.+.+|||....+.+-|| ...|||+.+.|..... .-+||+....-..||||..|.. |
T Consensus 443 h~mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~------------GsF~IkNlGK~~I~vng~~l~~-g 509 (547)
T KOG2293|consen 443 HYMRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKND------------GSFFIKNLGKRSILVNGGELDR-G 509 (547)
T ss_pred hhhcCcceEeeccCCCcceeeeccccCccceeeccceeEEeccC------------CcEEeccCcceeEEeCCccccC-C
Confidence 4467789999999865333332 2489999999987653 1389999999999999999999 8
Q ss_pred CccccCCCCEEEEccCCCCCccEEEEEc
Q 002652 172 SEVNIDHGDIISFAAPPQHDLAFAFVFR 199 (896)
Q Consensus 172 ~~~~L~~GDvIsLa~dp~~~~af~FVF~ 199 (896)
....|++..+|.|.. +.|||-
T Consensus 510 q~~~L~~nclveIrg-------~~FiF~ 530 (547)
T KOG2293|consen 510 QKVILKNNCLVEIRG-------LRFIFE 530 (547)
T ss_pred ceEEeccCcEEEEcc-------ceEEEe
Confidence 899999999999873 567774
No 201
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.29 E-value=9.6 Score=41.36 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002652 403 RRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNK 446 (896)
Q Consensus 403 ~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk 446 (896)
+.-+++.+++.--.+.++.+..+|.++..+.-++.+.+..|.-+
T Consensus 31 ~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E 74 (333)
T KOG1853|consen 31 QMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTE 74 (333)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555544444444333
No 202
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.26 E-value=7.4 Score=48.66 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002652 417 IAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQV 454 (896)
Q Consensus 417 E~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~L 454 (896)
..|++...+|+.+..++..+++.+..+.+++.....++
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544444433333
No 203
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.20 E-value=1.9 Score=42.00 Aligned_cols=96 Identities=22% Similarity=0.312 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~ 319 (896)
+..-|.+|...+..++.++..+...+.++... +..+.+++.+ +-...+.. ......+
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~-----------r~~l~~Eiv~--------l~~~~e~~----~~~~~~~ 70 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAE-----------RDELREEIVK--------LMEENEEL----RALKKEV 70 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH--------HHHHHHHH----HHHHHHH
Confidence 44556667777776666666665555555444 2333333311 11111111 1233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 320 ~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
..|+.++.+|+.+...+-..+.+-...+..|+.+|.+++
T Consensus 71 ~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555
No 204
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.19 E-value=11 Score=41.85 Aligned_cols=59 Identities=10% Similarity=0.172 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
-+-|..+|..+...+..|+.++......|.+....+..++..+...+-+++++++-...
T Consensus 146 ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qn 204 (305)
T PF14915_consen 146 NEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQN 204 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666666666666666666665555666666666666666665554433
No 205
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.11 E-value=13 Score=42.05 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 002652 502 LDILAATRDLDFERRRLKAARERIMLRETQLRAFYSTTE 540 (896)
Q Consensus 502 ~Eieka~reLE~Ek~rLq~~rerL~~~eqq~ka~iek~E 540 (896)
...++.+.+++.+..-|.+.++|+..+..+++.+|+...
T Consensus 241 aqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLk 279 (561)
T KOG1103|consen 241 AQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLK 279 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888898889999988888887776665
No 206
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=94.09 E-value=0.17 Score=62.32 Aligned_cols=93 Identities=23% Similarity=0.287 Sum_probs=69.1
Q ss_pred CceEEEEeecccccccCcceeEEecCCceEecCCCCC-CceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeC
Q 002652 77 KVWGVLTAISNNARKRHQGINILLTADEHCIGRLVDD-AHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDT 155 (896)
Q Consensus 77 ~~WG~L~~i~~~~~~r~~g~~i~L~~~~~~IGR~~~~-~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~ 155 (896)
....+|+-++.+-... ...|.|..+.+-+|-...+ ..|.+..|.|=.+||-|..-.. +|.+.=.
T Consensus 354 ~~lPvLve~s~dG~~s--~~ri~L~~~vtEVGs~~~~~~~iqLfGP~IqprHc~it~meG-------------VvTvTP~ 418 (1629)
T KOG1892|consen 354 EKLPVLVELSPDGSDS--RKRIRLQLSVTEVGSEKLDDNSIQLFGPGIQPRHCDITNMEG-------------VVTVTPR 418 (1629)
T ss_pred ccCcEEEEEcCCCCCc--ceeEEeccCceeccccccCCcceeeeCCCCCccccchhhccc-------------eEEeccc
Confidence 3455677666432111 1357788888889987643 2588899999999999975432 5777777
Q ss_pred CCC-ceeecCccccCCCCccccCCCCEEEEccC
Q 002652 156 STN-GTYVNCERFKKNSSEVNIDHGDIISFAAP 187 (896)
Q Consensus 156 StN-GTfVNg~ri~kng~~~~L~~GDvIsLa~d 187 (896)
+.. -|||||.+|.. ...|++|++|.||..
T Consensus 419 ~~DA~t~VnGh~isq---ttiL~~G~~v~fGa~ 448 (1629)
T KOG1892|consen 419 SMDAETYVNGHRISQ---TTILQSGMKVQFGAS 448 (1629)
T ss_pred ccchhhhccceecch---hhhhccCCEEEeccc
Confidence 877 89999999976 678999999999964
No 207
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.02 E-value=17 Score=43.25 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=6.4
Q ss_pred eeeecccccccccc
Q 002652 217 AEEYVSDNKRLKGI 230 (896)
Q Consensus 217 SgamtGgs~~~sG~ 230 (896)
+....-+..+|+|+
T Consensus 75 ~~~peke~~~~~~~ 88 (531)
T PF15450_consen 75 AQVPEKEACEPSSI 88 (531)
T ss_pred ccCccccccCCCCc
Confidence 33334444455554
No 208
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.90 E-value=3.1 Score=45.53 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 392 EKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVE 427 (896)
Q Consensus 392 eerkk~eee~~~~ieElee~l~KLqE~EKklr~elE 427 (896)
+|+.-+-..+.+.|.+++..+.||........-+++
T Consensus 7 EWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQle 42 (307)
T PF10481_consen 7 EWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLE 42 (307)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444444444555566666555555444433333333
No 209
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.85 E-value=3.1 Score=47.74 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-
Q 002652 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD- 371 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE- 371 (896)
++..++...-.++...++. ++.++..+-.++..+..+|.+......+++..+..+..++.++..+|+.-+....+-
T Consensus 245 kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 245 KLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444 444555555555555566666666666665555555555555554443332211111
Q ss_pred --HHH--HHHHHHHHHHHHHHHHHH
Q 002652 372 --REN--AEADLKAAVQKSQLETQE 392 (896)
Q Consensus 372 --LEe--~~~eLk~qIqkl~~El~e 392 (896)
.-+ -+-.++.+|.+|+.|+.+
T Consensus 322 ~~mtD~sPlv~IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 322 SSMTDGSPLVKIKQALTKLKQEIKQ 346 (359)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 044556667766666655
No 210
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.84 E-value=0.62 Score=48.70 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQV 262 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~ 262 (896)
..+..+...+..|+.++..+.
T Consensus 67 ~~~~~le~~~~~l~~ELael~ 87 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELY 87 (194)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 444455555555554444433
No 211
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=93.81 E-value=4.6 Score=38.46 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002652 299 KVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (896)
Q Consensus 299 eELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr 365 (896)
.+++.+|.-++..|........+|..+..+|...+..+..+.......+..|+..|.++.+.|+.++
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK 78 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEK 78 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444455555555555555555566666666666666666666644
No 212
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.80 E-value=12 Score=40.49 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002652 403 RRELEQQEVINKLQIA 418 (896)
Q Consensus 403 ~~ieElee~l~KLqE~ 418 (896)
..+..++.++..|+..
T Consensus 192 ~~~~~l~~~l~~Lq~~ 207 (240)
T PF12795_consen 192 ARIQRLQQQLQALQNL 207 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 213
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.78 E-value=8.4 Score=48.18 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik 348 (896)
+...+..++..-+.|.++++.+..+...|.+.++
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 214
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=93.75 E-value=20 Score=43.11 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLS 334 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLe 334 (896)
...+..+.+..+..|..++.
T Consensus 185 fl~rtl~~e~~~~~L~~~~~ 204 (511)
T PF09787_consen 185 FLKRTLKKEIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544
No 215
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.70 E-value=1.4 Score=46.78 Aligned_cols=67 Identities=25% Similarity=0.341 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 297 QLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 297 QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
.+.+++.++++..++..++...+.+++.++++++.+|+.++..++.|+...+++.-....|+..+++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3566667777777777777777788888888888888877777777777777666666665544443
No 216
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.67 E-value=5 Score=43.70 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 439 RLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKV 497 (896)
Q Consensus 439 ~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki 497 (896)
......+....|...+.+....+..+.......+.+...|+.++...+ .........+
T Consensus 69 ~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar-~~~~~ak~~L 126 (246)
T PF00769_consen 69 EAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAR-EDEEEAKEEL 126 (246)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333344555556666666666666667777777777777777777766 5444444443
No 217
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.57 E-value=20 Score=42.53 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMED 328 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~el~~k~~kLEsEleE 328 (896)
.+-.+...|+.+.+-++......-.++..|..++..
T Consensus 87 sllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~ 122 (596)
T KOG4360|consen 87 SLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSR 122 (596)
T ss_pred HHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhh
Confidence 344445555555555555555555555555554433
No 218
>PLN02939 transferase, transferring glycosyl groups
Probab=93.49 E-value=31 Score=44.47 Aligned_cols=9 Identities=44% Similarity=0.486 Sum_probs=4.5
Q ss_pred CCCCccCCC
Q 002652 843 SDTECCGDS 851 (896)
Q Consensus 843 ~~~~~~~~~ 851 (896)
|-.|.|+-+
T Consensus 864 Sr~EPfGLv 872 (977)
T PLN02939 864 SMFEPCGLT 872 (977)
T ss_pred CCccCCcHH
Confidence 335555544
No 219
>PRK12704 phosphodiesterase; Provisional
Probab=93.48 E-value=23 Score=42.85 Aligned_cols=15 Identities=20% Similarity=0.446 Sum_probs=9.4
Q ss_pred ccch-hhhhhhhhhhh
Q 002652 730 TMED-TIRTADLLASE 744 (896)
Q Consensus 730 ~~~~-~~~~~~~~~~~ 744 (896)
+++. .+-.||.|++-
T Consensus 414 ~~~a~IV~~ADaLsa~ 429 (520)
T PRK12704 414 SIEAVLVAAADAISAA 429 (520)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 3344 77788877653
No 220
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.48 E-value=1.1 Score=46.90 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNE 271 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~e 271 (896)
..+..|+.+++.+..........+-.+..+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~ 103 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDE 103 (194)
T ss_dssp ------------------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 455566666666665555555554444333
No 221
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.40 E-value=20 Score=41.88 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAE 314 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~e 314 (896)
++.|+.+++.++...+..+..
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~ 196 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSA 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 222
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.38 E-value=17 Score=41.05 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSG 499 (896)
Q Consensus 420 Kklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~ 499 (896)
++++..-+.|..+|-..+.-++....++..|+..+...+.....++-.++++..++.+.+++...+. .+..++.+.+..
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Ln-rELaE~layqq~ 180 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLN-RELAEALAYQQE 180 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH-HHHHHHHHHHHH
Confidence 3445555566666666666666666666677776666666666667777777777777777777766 555555556656
Q ss_pred HHHHHH
Q 002652 500 LELDIL 505 (896)
Q Consensus 500 LE~Eie 505 (896)
|-.|++
T Consensus 181 L~~eyQ 186 (401)
T PF06785_consen 181 LNDEYQ 186 (401)
T ss_pred HHHHhh
Confidence 665554
No 223
>PF13166 AAA_13: AAA domain
Probab=93.36 E-value=27 Score=43.35 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 446 KVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSG 499 (896)
Q Consensus 446 k~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~ 499 (896)
++..+.+.+.........++..+...+.++.+|+.++.... ...+.+...+..
T Consensus 418 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-~~~~~iN~~L~~ 470 (712)
T PF13166_consen 418 EIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTE-PAADRINEELKR 470 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence 33333333333333333334444444555555554444333 333333333333
No 224
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=93.25 E-value=24 Score=42.53 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=6.8
Q ss_pred hhhhhhhhhhh
Q 002652 734 TIRTADLLASE 744 (896)
Q Consensus 734 ~~~~~~~~~~~ 744 (896)
.+-.||.|++-
T Consensus 413 IV~~AD~lsa~ 423 (514)
T TIGR03319 413 LVAAADALSAA 423 (514)
T ss_pred HHHHHHHhcCC
Confidence 66677766543
No 225
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.19 E-value=27 Score=42.94 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 421 klr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
++...+.....+++.+..-+...++-.-+.+..+++.-..+....+.+..++.+++.|...|..
T Consensus 423 rl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~ 486 (716)
T KOG4593|consen 423 RLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSS 486 (716)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445544444444444444444444444333333344444444444444444443
No 226
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=93.12 E-value=34 Score=43.87 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q 002652 251 NTELRKQLESQVLEIDKLRNEN--------RVVVERHEKEMKEMKESVS-------------ISYLHQLKVLRDMLDAKQ 309 (896)
Q Consensus 251 ~~eL~~qlee~~~~i~~Lr~ei--------~~ir~r~E~El~El~e~l~-------------kklE~QLeELq~kLee~e 309 (896)
...|+.|+......++.|.+.+ +..+.+|+..+.++..++. +++...|.-|+..+..+.
T Consensus 1065 s~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLR 1144 (1439)
T PF12252_consen 1065 SSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLR 1144 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667766666677777655 7788888888888888873 344444555555555444
Q ss_pred HHHH
Q 002652 310 KELA 313 (896)
Q Consensus 310 keL~ 313 (896)
++..
T Consensus 1145 nEK~ 1148 (1439)
T PF12252_consen 1145 NEKI 1148 (1439)
T ss_pred hHHH
Confidence 4443
No 227
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.08 E-value=19 Score=40.75 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
+.-+.-++-.-.+|.+.+..-+.....++.++
T Consensus 62 iP~LElY~~sC~EL~~~I~egr~~~~~~E~et 93 (312)
T smart00787 62 VPLLELYQFSCKELKKYISEGRDLFKEIEEET 93 (312)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777788888877777777777776
No 228
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=92.98 E-value=21 Score=41.02 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEK 281 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~ 281 (896)
|-...|++++..|++|++.-+...+.+....+..+..|..
T Consensus 291 D~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~ 330 (593)
T KOG4807|consen 291 DGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIP 330 (593)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCC
Confidence 3456788888888888888777776666666555555443
No 229
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.97 E-value=8 Score=42.16 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 471 LENEIKKLREELESE 485 (896)
Q Consensus 471 lE~EireLe~ELE~~ 485 (896)
++.+++.|+.+|..+
T Consensus 187 lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 187 LQEQLKELKSELEQL 201 (246)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 230
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.96 E-value=7 Score=38.16 Aligned_cols=92 Identities=24% Similarity=0.331 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~k 321 (896)
..||+++.++..|+.++..+....+.++.++-.+....+ ++......+ ..++.++.+++.+++.+=.-+.+..+.+.+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-~~~~~~~~~-~~L~~el~~l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE-ELRALKKEV-EELEQELEELQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 567888899999999999888888888888866554422 122222333 466777777777777776666677777777
Q ss_pred HHHHHHHHHHHHHH
Q 002652 322 QKHEMEDLNDRLSA 335 (896)
Q Consensus 322 LEsEleEL~eqLee 335 (896)
|+..+.+++.-+..
T Consensus 101 L~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 101 LRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666655443
No 231
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.92 E-value=25 Score=41.85 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 372 RENAEADLKAAVQKSQLETQEKLK 395 (896)
Q Consensus 372 LEe~~~eLk~qIqkl~~El~eerk 395 (896)
+++....|+.+.+.+-+++-+.+.
T Consensus 104 l~~~~~~L~~~F~~LA~~ile~k~ 127 (475)
T PRK10361 104 MINSEQRLSEQFENLANRIFEHSN 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555544444444433
No 232
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.89 E-value=20 Score=40.59 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002652 252 TELRKQLESQVLEIDKLRNENRVVVERHEK 281 (896)
Q Consensus 252 ~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~ 281 (896)
.-|..+|+..+.+.+....-+..++.+|..
T Consensus 12 ~IL~~eLe~cq~ErDqyKlMAEqLqer~q~ 41 (319)
T PF09789_consen 12 LILSQELEKCQSERDQYKLMAEQLQERYQA 41 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555444444433
No 233
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.83 E-value=38 Score=43.67 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
...+++++..+++.+++++.++.+...-+......|..++..++..+..-..++..++..+.+++..|..
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554444555666666666666666666666666666666655444
No 234
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.71 E-value=5.3 Score=48.12 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 423 SLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGL 500 (896)
Q Consensus 423 r~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~L 500 (896)
+.+...|+.++++++..+..|+.++..|...+..+ . ....+++.++.++..|+.+|.+.+ ...+.++.++..|
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~-~---~~~rei~~~~~~I~~L~~~L~e~~-~~ve~L~~~l~~l 507 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRREVRDK-V---RKDREIRARDRRIERLEKELEEKK-KRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33333334444444444444444444444433311 1 114455666666666666666655 4444444444333
No 235
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.56 E-value=13 Score=38.20 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
.+.+|..|..+|..|...+++.-..+..++..+
T Consensus 40 ~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 40 HLIDFEQLKIENQQLNEKIEERNKELLKLKKKI 72 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777666666655555544
No 236
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=92.54 E-value=24 Score=40.57 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002652 420 KQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKE 457 (896)
Q Consensus 420 Kklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEe 457 (896)
+....++..++.+|+-+..+++..=-++..|.+.++.+
T Consensus 417 rQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEae 454 (593)
T KOG4807|consen 417 RQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAE 454 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666655555444455555555555
No 237
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.51 E-value=23 Score=42.89 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH
Q 002652 517 RLKAARERIMLRETQLRAFYSTTE 540 (896)
Q Consensus 517 rLq~~rerL~~~eqq~ka~iek~E 540 (896)
+|+.+.+.++.-..++.-||+...
T Consensus 278 ~lk~a~eslm~ane~kdr~ie~lr 301 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKDRFIESLR 301 (861)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHH
Confidence 454444544444444444554444
No 238
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.33 E-value=27 Score=40.70 Aligned_cols=108 Identities=21% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS---ISYLHQLKVLRDMLDAKQKELAEISR 317 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~---kklE~QLeELq~kLee~ekeL~el~~ 317 (896)
-.+|+.|+++...|...-...-..--+++.++-.+..| ...+.+.++ -+.+..|.+-..+- +++--+.+
T Consensus 221 ~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR----~h~LEEq~reqElraeE~l~Ee~rrh----rEil~k~e 292 (502)
T KOG0982|consen 221 ERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHR----YHMLEEQRREQELRAEESLSEEERRH----REILIKKE 292 (502)
T ss_pred HHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHH----HHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHH
Confidence 46778888888777753333333333445555444444 233333331 12222222211111 11111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 318 k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+.+.+ +++.++-++..++....++...+.+|+..++.|.
T Consensus 293 Reasl--e~Enlqmr~qqleeentelRs~~arlksl~dkla 331 (502)
T KOG0982|consen 293 REASL--EKENLQMRDQQLEEENTELRSLIARLKSLADKLA 331 (502)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333 3334555566666666666666666665555544
No 239
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.28 E-value=36 Score=42.09 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=14.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 002652 532 LRAFYSTTEEISVLFARQQEQLKA 555 (896)
Q Consensus 532 ~ka~iek~EEiee~fkk~~~qL~~ 555 (896)
....+.++++....|+.+...+..
T Consensus 359 ~d~~i~k~keea~srk~il~~ve~ 382 (660)
T KOG4302|consen 359 IDNLIKKYKEEALSRKEILERVEK 382 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777766644
No 240
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.20 E-value=0.42 Score=57.26 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=63.8
Q ss_pred eeEEecCCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCCCccc
Q 002652 96 INILLTADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVN 175 (896)
Q Consensus 96 ~~i~L~~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~ri~kng~~~~ 175 (896)
+.|.|.....+|||++.- .|.+...||+.-.+.-+-. .+.|.++-...|-|-|||.-|.+ +....
T Consensus 25 ~~~~~~~~~~~~gr~pet---~i~d~~cs~~qv~l~a~~~-----------~~~v~~k~lg~np~~~~~~~~~~-~~~~~ 89 (526)
T TIGR01663 25 HFIHLDAGALFLGRGPET---GIRDRKCSKRQIELQADLE-----------KATVALKQLGVNPCGTGGLELKP-GGEGE 89 (526)
T ss_pred CeeccCCCceEEccCccc---ccchhhhchhhheeeeccc-----------CceEEEEEccCCCcccCceEecC-CCeee
Confidence 456677778899999864 8889999999888765432 13577888999999999999999 88899
Q ss_pred cCCCCEEEEccC
Q 002652 176 IDHGDIISFAAP 187 (896)
Q Consensus 176 L~~GDvIsLa~d 187 (896)
|++||.+.|++.
T Consensus 90 l~~g~~l~~v~~ 101 (526)
T TIGR01663 90 LGHGDLLEIVNG 101 (526)
T ss_pred ecCCCEEEEecc
Confidence 999999999964
No 241
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.16 E-value=17 Score=37.90 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENR 273 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~ 273 (896)
++.-++.|+.+|..|+-+.......+..+..+..
T Consensus 2 visALK~LQeKIrrLELER~qAe~nl~~LS~et~ 35 (178)
T PF14073_consen 2 VISALKNLQEKIRRLELERSQAEDNLKQLSRETS 35 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4677899999999999888888888877777763
No 242
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.15 E-value=21 Score=39.00 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 303 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 303 ~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
.++.+..+.-.-+..+++.-+.++.++..++..++....
T Consensus 122 qQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~ 160 (330)
T KOG2991|consen 122 QQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQ 160 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334444444444566666666666666666666665544
No 243
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.12 E-value=6.8 Score=49.19 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=53.6
Q ss_pred CCceEecCCCCCCceecCCCcccccceEEEEeccCCCCCCCCCCCCceEEEEeCCCCceeecCccccCCCCccccCCCCE
Q 002652 102 ADEHCIGRLVDDAHFQIDSNAVSANHCKIYRKKFASGDLDHSPSGCSSVCLKDTSTNGTYVNCERFKKNSSEVNIDHGDI 181 (896)
Q Consensus 102 ~~~~~IGR~~~~~di~i~~~~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D~StNGTfVNg~ri~kng~~~~L~~GDv 181 (896)
.+..+||-..+- +|++....|=.+||+|..... + .+|+.-...--+||||..+.. ...|.|||.
T Consensus 466 ~~~tlig~~~~~-~i~l~glgi~p~h~vidI~~d----------g--~l~~~p~~~~R~~VNGs~v~~---~t~L~~GdR 529 (1714)
T KOG0241|consen 466 KDHTLIGLFKSQ-DIQLSGLGIQPKHCVIDIESD----------G--ELRLTPLLNARSCVNGSLVCS---TTQLWHGDR 529 (1714)
T ss_pred cCceeeccccCc-ceeeecCcccCccceeeeccC----------C--cEEecccccceeeecCceecc---ccccccCce
Confidence 456788866554 899999999999999987543 1 256655554599999998876 579999999
Q ss_pred EEEcc
Q 002652 182 ISFAA 186 (896)
Q Consensus 182 IsLa~ 186 (896)
|-.|.
T Consensus 530 iLwGn 534 (1714)
T KOG0241|consen 530 ILWGN 534 (1714)
T ss_pred EEecc
Confidence 98885
No 244
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.02 E-value=39 Score=41.87 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 312 L~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
+.++..++.+...-+++.++++.+.+.+....+.++..++.++.+.+..|+-
T Consensus 357 l~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~ 408 (1480)
T COG3096 357 LEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDV 408 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334444444444444444444444444444444455555555554444433
No 245
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=91.99 E-value=19 Score=38.34 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRV 468 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel 468 (896)
+..+...++.++..+..+..++..|..++.+.+.+...|..+.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555444443333
No 246
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.73 E-value=43 Score=41.78 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002652 524 RIMLRETQLRAFYSTTEEISVLFARQQEQL 553 (896)
Q Consensus 524 rL~~~eqq~ka~iek~EEiee~fkk~~~qL 553 (896)
-|.....|..|++.+.+++.+...+-..+|
T Consensus 526 iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 526 ILGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666677777775554444444333
No 247
>PLN02939 transferase, transferring glycosyl groups
Probab=91.69 E-value=51 Score=42.58 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002652 518 LKAARERIMLRETQLRAFYSTTEEISVLFARQQEQL 553 (896)
Q Consensus 518 Lq~~rerL~~~eqq~ka~iek~EEiee~fkk~~~qL 553 (896)
++...+||+....++.+.+..+.+--..|+.....|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 360 LKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKL 395 (977)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555544444444444444444
No 248
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=33 Score=40.29 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 440 LVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 440 l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
...+..++++|...+..-+..+.++..+.+++++++-.+...|.+
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567777777777777666666666666666666655555554
No 249
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.64 E-value=9.7 Score=44.43 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=10.1
Q ss_pred CCCCceeeeccccCCCCCCC
Q 002652 54 VPSHFVFWVAGTYAAQPLQN 73 (896)
Q Consensus 54 ~~~~~~~~va~~~~~qp~~~ 73 (896)
--..|++.+....+...+.+
T Consensus 51 e~t~GiiHLyk~n~~~s~~~ 70 (493)
T KOG0804|consen 51 EETHGIIHLYKKNSHSSLKN 70 (493)
T ss_pred eeeceeEEEEecCccccccc
Confidence 33456666655554444433
No 250
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.57 E-value=14 Score=42.50 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=5.8
Q ss_pred CcccccceEEEE
Q 002652 121 NAVSANHCKIYR 132 (896)
Q Consensus 121 ~~ISr~Hc~I~~ 132 (896)
..+.+.+|.+.+
T Consensus 112 ~AL~~~~F~~~~ 123 (359)
T PF10498_consen 112 EALKRKNFKWKR 123 (359)
T ss_pred HHHHhcCcCccC
Confidence 345555555433
No 251
>PRK00106 hypothetical protein; Provisional
Probab=91.49 E-value=40 Score=40.92 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=5.3
Q ss_pred hhhhhhhhhh
Q 002652 734 TIRTADLLAS 743 (896)
Q Consensus 734 ~~~~~~~~~~ 743 (896)
.+-.||-|++
T Consensus 434 IV~~AD~lsa 443 (535)
T PRK00106 434 IVAAADALSS 443 (535)
T ss_pred HHHHHHHhcc
Confidence 5555665543
No 252
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.30 E-value=44 Score=41.12 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQ-----VLEIDKLRNENRVVVERHEKEMKEMKESV 290 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~-----~~~i~~Lr~ei~~ir~r~E~El~El~e~l 290 (896)
|.++|+|+++..+-..||... ...-.+.+.+..+.+.-++.++..+....
T Consensus 796 LreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQ 850 (1187)
T KOG0579|consen 796 LRELRRLQKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQ 850 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 455666666666666565554 22223444555555555555555555444
No 253
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=91.23 E-value=48 Score=41.39 Aligned_cols=7 Identities=71% Similarity=0.724 Sum_probs=3.3
Q ss_pred hhhhhhh
Q 002652 734 TIRTADL 740 (896)
Q Consensus 734 ~~~~~~~ 740 (896)
+.||+||
T Consensus 750 l~r~~~~ 756 (861)
T PF15254_consen 750 LSRTADL 756 (861)
T ss_pred hccccch
Confidence 4455543
No 254
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.20 E-value=17 Score=39.56 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 305 LDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKV 352 (896)
Q Consensus 305 Lee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~ 352 (896)
+..+.+++..+...+.+++..+...+.++..++.++..+......+.-
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444444444444443333333
No 255
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.13 E-value=10 Score=41.72 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKE 285 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~E 285 (896)
.|-+|..|+..+.+|.++.....-.++.|+.-+.+.+.+.+.+..+
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e 61 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE 61 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 4788999999999998887777777777777665555554444333
No 256
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.12 E-value=36 Score=39.73 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 345 (896)
Q Consensus 292 kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLek 345 (896)
+++.+.++++..+++.....-..-...+.+++..+++|+..+.....+...+..
T Consensus 148 ~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~ 201 (446)
T KOG4438|consen 148 KQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLA 201 (446)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455444444444444555555555555554444444443333
No 257
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.93 E-value=14 Score=38.21 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 246 SLQRSNTELRKQLES 260 (896)
Q Consensus 246 ~Le~e~~eL~~qlee 260 (896)
.++..+..|..++..
T Consensus 85 ~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQ 99 (191)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333333333333333
No 258
>PF15294 Leu_zip: Leucine zipper
Probab=90.85 E-value=11 Score=41.72 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~ 359 (896)
+...+..|+.|+..|+.+|..++..+..+-++...++.++.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888888888888888885
No 259
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.47 E-value=11 Score=36.04 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 345 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLek 345 (896)
++.++...+++.++..+|...+..|+.+...+..++.++...+.++..
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 260
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.47 E-value=4.5 Score=43.03 Aligned_cols=10 Identities=10% Similarity=0.541 Sum_probs=5.8
Q ss_pred cCCCCEEEEc
Q 002652 176 IDHGDIISFA 185 (896)
Q Consensus 176 L~~GDvIsLa 185 (896)
|..|..|.+.
T Consensus 50 l~~G~~v~vl 59 (206)
T PRK10884 50 LNAGEEVTLL 59 (206)
T ss_pred EcCCCEEEEE
Confidence 4556666654
No 261
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.27 E-value=33 Score=37.83 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=10.1
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 002652 353 TIDELKTQLDEERNLRRVDR 372 (896)
Q Consensus 353 eI~ELe~qLEeEr~~~~EEL 372 (896)
+|.+|.++|+.-++....|+
T Consensus 121 qIa~L~rqlq~lk~~qqdEl 140 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDEL 140 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444443
No 262
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.03 E-value=52 Score=39.79 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLET 452 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk 452 (896)
+..|+.+|+.+..+..-|.-+++++++
T Consensus 461 ~~sL~~~LeqAsK~CRIL~~RL~K~~R 487 (852)
T KOG4787|consen 461 VISLATKLEQANKQCRILNERLNKLHR 487 (852)
T ss_pred HHHHHHHHHHHhchhHHHHHHHhHHHH
Confidence 346666777766666666666666665
No 263
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.98 E-value=29 Score=36.84 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002652 377 ADLKAAVQKSQLETQEKLK 395 (896)
Q Consensus 377 ~eLk~qIqkl~~El~eerk 395 (896)
..|..++..++.++..++.
T Consensus 134 ~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQ 152 (202)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 264
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.80 E-value=7.1 Score=44.08 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002652 328 DLNDRLSASMQSCTEANEIM 347 (896)
Q Consensus 328 EL~eqLee~e~~~~eLekei 347 (896)
++..+|..++....++.+++
T Consensus 61 ~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQEL 80 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 265
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.59 E-value=31 Score=36.55 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 465 KKRVEELENEIKKLREELESEKQAAREVAWAKV 497 (896)
Q Consensus 465 qkel~elE~EireLe~ELE~~k~~~~Ee~~~ki 497 (896)
++++..++++...|...+.++. .+++++..+-
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle-~ErdeL~~kf 130 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLE-QERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4444444444444444444443 3444444333
No 266
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.37 E-value=25 Score=35.15 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002652 330 NDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERN 366 (896)
Q Consensus 330 ~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~ 366 (896)
..++..+...+....+++.++...+.....+...+.+
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444443
No 267
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.20 E-value=9.3 Score=46.18 Aligned_cols=85 Identities=22% Similarity=0.371 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT---EANEIMKSQKVTIDELKTQLDEERNLRR 369 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~---eLekeik~LE~eI~ELe~qLEeEr~~~~ 369 (896)
.+...+..+..+++.+++++..|...+.+++.+++.|..+|+.+..... ...+++..++..|..|++.|.++.. ..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~-~v 497 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK-RV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4555566666666666666666666666666666666666665555443 3334444556666666666655443 33
Q ss_pred HHHHHHHHH
Q 002652 370 VDRENAEAD 378 (896)
Q Consensus 370 EELEe~~~e 378 (896)
++|+.....
T Consensus 498 e~L~~~l~~ 506 (652)
T COG2433 498 EELERKLAE 506 (652)
T ss_pred HHHHHHHHH
Confidence 344333333
No 268
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.19 E-value=56 Score=39.01 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002652 441 VTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLR 479 (896)
Q Consensus 441 ~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe 479 (896)
.++-..++.+...+.+++.+.+...+.+.+.+.+++.|+
T Consensus 264 q~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 264 QAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444444444554444444555555555555444
No 269
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.17 E-value=54 Score=38.76 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=4.2
Q ss_pred hcccccc
Q 002652 566 YENTSVD 572 (896)
Q Consensus 566 ~~s~~le 572 (896)
|++|.+.
T Consensus 322 P~dG~V~ 328 (457)
T TIGR01000 322 PEDGVLH 328 (457)
T ss_pred CCCeEEE
Confidence 6666654
No 270
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.17 E-value=89 Score=41.30 Aligned_cols=23 Identities=9% Similarity=0.316 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 002652 538 TTEEISVLFARQQEQLKAMQKTL 560 (896)
Q Consensus 538 k~EEiee~fkk~~~qL~~lq~~L 560 (896)
.+.+|+...|++..++..|...|
T Consensus 1230 ~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1230 AYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458888888888998888777
No 271
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=89.13 E-value=77 Score=40.48 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT---QLDEERNLRRV 370 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~---qLEeEr~~~~E 370 (896)
+..++.++..+|++++...............-...+...+-.++..+..++.+..++-.++..+.+ .|-+++..++.
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk 551 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLK 551 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHH
Confidence 444455555555555444443332222222222223333334444444444444455444444433 45556666666
Q ss_pred HHHHHHHHHHH
Q 002652 371 DRENAEADLKA 381 (896)
Q Consensus 371 ELEe~~~eLk~ 381 (896)
.+|..+..|+.
T Consensus 552 ~le~q~s~lkk 562 (913)
T KOG0244|consen 552 SLETQISLLKK 562 (913)
T ss_pred HHHHHHHHHHH
Confidence 77666666654
No 272
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=88.82 E-value=46 Score=37.52 Aligned_cols=205 Identities=18% Similarity=0.178 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQE-K 393 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~e-e 393 (896)
....+.+++..+.++...|+.-......+......|...+.+|-.+++.-... ++-+...+. +..++.+.....-. .
T Consensus 107 Rkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~h-idk~~e~ke-l~~ql~~aKlq~~~~l 184 (391)
T KOG1850|consen 107 RKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKH-IDKQIQKKE-LWEQLGKAKLQEIKLL 184 (391)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHhHHHHHHHHHH
Confidence 44556677777777777777777777777776666666666655444332111 111111111 22222221110000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002652 394 LKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELEN 473 (896)
Q Consensus 394 rkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~ 473 (896)
....+ .+ .+.+.+.-+++.. ..+--++++...=-.++..+..+-.+..+|...|+.-...+..+..++..+..
T Consensus 185 ~a~~e-e~--~~~e~~~glEKd~----lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtK 257 (391)
T KOG1850|consen 185 TAKLE-EA--SIQEKKSGLEKDE----LAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTK 257 (391)
T ss_pred HHHHH-HH--HHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00000 00 0000000111110 11112334433333456666677788889999998888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 474 EIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLR 533 (896)
Q Consensus 474 EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~rerL~~~eqq~k 533 (896)
.+++++.+.--.+ ...+.+-..+ ..|...+..|+.+...++..++||+.+-.+++
T Consensus 258 k~kklEKE~l~wr-~K~e~aNk~v----L~la~ekt~~~k~~~~lq~kiq~LekLcRALq 312 (391)
T KOG1850|consen 258 KIKKLEKETLIWR-TKWENANKAV----LQLAEEKTVRDKEYETLQKKIQRLEKLCRALQ 312 (391)
T ss_pred HHHHHHHHHHHHH-HHHhhhhHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888887 6666665555 34444455666666677766677776655554
No 273
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=88.67 E-value=36 Score=40.43 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=48.8
Q ss_pred eeccccccc----------ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002652 219 EYVSDNKRL----------KGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKE 288 (896)
Q Consensus 219 amtGgs~~~----------sG~~~sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e 288 (896)
+|||++|.- -|.+-+ +..|.+..+ +.|+.++.+|+.+..+. .......+.+..++-.+|.++..
T Consensus 53 ~iTGesyGesvKqAVilNVlG~~d~-~pDPLsPgE-~~l~~Kl~eLE~e~k~d----~v~~khn~~I~~k~g~~L~~v~~ 126 (508)
T PF00901_consen 53 AITGESYGESVKQAVILNVLGTGDE-PPDPLSPGE-QGLQRKLKELEDEQKED----EVREKHNKKIIEKFGNDLEKVYK 126 (508)
T ss_pred HhcccchHHHHHHHHHHHhccCCCC-CCCCCCHhH-HHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888875 233223 334555554 45666666666332221 11223334555555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 289 SVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLS 334 (896)
Q Consensus 289 ~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLe 334 (896)
-+. .....-..-..+++.+++.+..+..-+..-...+..|...|.
T Consensus 127 ~~~-~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~ 171 (508)
T PF00901_consen 127 FMK-GQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQ 171 (508)
T ss_pred HHH-HhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 111112222233334444444444444444444444444433
No 274
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.58 E-value=6.4 Score=34.00 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 310 KELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 310 keL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+....+...+.+.+...-.+..+|.+.+.++.+|..++..|+.+++++.
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334466666667777777777777777777777777777777776654
No 275
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=88.55 E-value=67 Score=39.10 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 002652 536 YSTTEEISVLFARQQEQLKAMQ 557 (896)
Q Consensus 536 iek~EEiee~fkk~~~qL~~lq 557 (896)
+-+...+.+.|......++...
T Consensus 465 v~s~~~L~~rf~~v~~~~r~~~ 486 (582)
T PF09731_consen 465 VPSEAQLRNRFERVAPEVRRAS 486 (582)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777665543
No 276
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=88.51 E-value=48 Score=37.37 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002652 465 KKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRR 517 (896)
Q Consensus 465 qkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~r 517 (896)
..+-.+.+.-+.+-.+-...++ .+.+.+..++..|+.|.--++..|+.-..-
T Consensus 228 ~aKyeefq~tl~KSNE~F~~fK-~E~ekmtKk~kklEKE~l~wr~K~e~aNk~ 279 (391)
T KOG1850|consen 228 MAKYEEFQTTLAKSNELFTKFK-QEMEKMTKKIKKLEKETLIWRTKWENANKA 279 (391)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3344444444444443344466 788888999999999887777777764443
No 277
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.45 E-value=9.2 Score=40.84 Aligned_cols=64 Identities=25% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002652 406 LEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVE 469 (896)
Q Consensus 406 eElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~ 469 (896)
+++.+.+..+++....+..+++.++.+++..+..+..++.+...|+.++...-..+..+..+.+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 3333333333444445555666667777766666666666665555554444333333333333
No 278
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=88.22 E-value=31 Score=38.92 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNE 271 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~e 271 (896)
++.|..++.+++.-....|+....|.++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNe 106 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNE 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 4555556666665555556665555554
No 279
>PF14992 TMCO5: TMCO5 family
Probab=88.08 E-value=31 Score=38.41 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKE 457 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEe 457 (896)
+...+.++..+...+...++++.++....+..
T Consensus 111 lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v 142 (280)
T PF14992_consen 111 LQFSKNKLQQLLESCASQEKEIAKVEDDYQQV 142 (280)
T ss_pred cHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777777666665544433
No 280
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.00 E-value=83 Score=39.47 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Q 002652 491 EVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLRAFYS---TTEEISVLFARQQEQLKA 555 (896)
Q Consensus 491 Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~rerL~~~eqq~ka~ie---k~EEiee~fkk~~~qL~~ 555 (896)
..++.+++.|..|+.++..-=|.+. .++|+.+++|.+.-+. -.-++.++|.++..+|..
T Consensus 669 s~LK~k~E~Lk~Evaka~~~pd~~~------k~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~ 730 (762)
T PLN03229 669 SDLKSKIELLKLEVAKASKTPDVTE------KEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAA 730 (762)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCcch------HHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHH
Confidence 3455555555555554433333221 2455666666653331 112345555566666644
No 281
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.92 E-value=74 Score=38.80 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002652 404 RELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS 443 (896)
Q Consensus 404 ~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~l 443 (896)
.+++.++-+..|....+|....++++-.-+++.++.+..+
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555666666666666666555555544
No 282
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.89 E-value=40 Score=35.70 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 002652 328 DLNDRLSASMQ 338 (896)
Q Consensus 328 EL~eqLee~e~ 338 (896)
.+...+.....
T Consensus 41 ~a~~~~a~~~a 51 (221)
T PF04012_consen 41 KARQALARVMA 51 (221)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 283
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.75 E-value=49 Score=36.52 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 474 EIKKLREELESEKQAAREVAWAKVSGLELDI 504 (896)
Q Consensus 474 EireLe~ELE~~k~~~~Ee~~~ki~~LE~Ei 504 (896)
+-..+..++...+ ...++++..|..|..|+
T Consensus 187 ~N~~m~kei~~~r-e~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 187 ENQVMQKEIVQFR-EEIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3334444444444 44444444444444333
No 284
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.72 E-value=56 Score=37.25 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLE 264 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~ 264 (896)
|+++..-......|+.+|......
T Consensus 7 L~KL~et~~~V~~m~~~L~~~~~~ 30 (344)
T PF12777_consen 7 LDKLKETEEQVEEMQEELEEKQPE 30 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455444444444
No 285
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.71 E-value=8.9 Score=40.78 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQV 262 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~ 262 (896)
...++..|++++.+|+.++.+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777775555433
No 286
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.39 E-value=37 Score=39.86 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=8.0
Q ss_pred ccceEEEEecc
Q 002652 125 ANHCKIYRKKF 135 (896)
Q Consensus 125 r~Hc~I~~~~~ 135 (896)
-.|.+|.|++.
T Consensus 102 I~~irivRd~~ 112 (493)
T KOG0804|consen 102 ISDIRIVRDGM 112 (493)
T ss_pred hheeEEeecCC
Confidence 36889999654
No 287
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.33 E-value=66 Score=37.64 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSC 340 (896)
Q Consensus 295 E~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~ 340 (896)
..++.-|+.+..+++..-.-...+..++..+.-.|..+...++.+.
T Consensus 221 ~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~ 266 (502)
T KOG0982|consen 221 ERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQR 266 (502)
T ss_pred HHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333444555555555555555444443
No 288
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.22 E-value=69 Score=37.74 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=5.8
Q ss_pred ccEEEEEcc
Q 002652 192 LAFAFVFRD 200 (896)
Q Consensus 192 ~af~FVF~d 200 (896)
..|.|+|.+
T Consensus 204 ~df~f~~t~ 212 (521)
T KOG1937|consen 204 KDFNFKLTD 212 (521)
T ss_pred ccccceecC
Confidence 457777764
No 289
>PRK00106 hypothetical protein; Provisional
Probab=87.17 E-value=80 Score=38.41 Aligned_cols=8 Identities=0% Similarity=-0.139 Sum_probs=3.6
Q ss_pred hhhccccc
Q 002652 564 ENYENTSV 571 (896)
Q Consensus 564 ek~~s~~l 571 (896)
+..|.+|+
T Consensus 374 e~a~~AGL 381 (535)
T PRK00106 374 ALARRAGF 381 (535)
T ss_pred HHHHHHHH
Confidence 44444444
No 290
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.93 E-value=44 Score=37.69 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 412 INKLQIAEKQSSLQVESLKLKLD 434 (896)
Q Consensus 412 l~KLqE~EKklr~elEdLq~eLE 434 (896)
++||-+..+++..++..|+..|+
T Consensus 221 LkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 221 LKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444443
No 291
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=86.86 E-value=44 Score=35.18 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDIL 505 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie 505 (896)
+......|...+.++.....-.+.....+...+..+..++..+...+.-....+.+|..-. ...+.++.+++.|...|.
T Consensus 83 V~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~-qLLeaAk~Rve~L~~QL~ 161 (188)
T PF05335_consen 83 VQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKT-QLLEAAKRRVEELQRQLQ 161 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444445555555555555555555554 555666666666666666
Q ss_pred HHhhhHHHHHH
Q 002652 506 AATRDLDFERR 516 (896)
Q Consensus 506 ka~reLE~Ek~ 516 (896)
.++.+|+..+.
T Consensus 162 ~Ar~D~~~tk~ 172 (188)
T PF05335_consen 162 AARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 292
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=86.85 E-value=68 Score=37.27 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 448 reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k 486 (896)
..|.+++.+.+....+|+-.+.....+|..++..+..+.
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~ 285 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLE 285 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455566666655555555555555555555555444444
No 293
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=86.54 E-value=82 Score=37.86 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 472 ENEIKKLREELESEKQAAREVAWAKVSGLELDIL 505 (896)
Q Consensus 472 E~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie 505 (896)
+..++.++..|+.+. ..++.+.+++..+..++.
T Consensus 411 ~~~l~~v~eKVd~Lp-qqI~~vs~Kc~~~Ksd~d 443 (531)
T PF15450_consen 411 EKHLKEVQEKVDSLP-QQIEEVSDKCDLHKSDSD 443 (531)
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhhhh
Confidence 344555666666665 566666666665554443
No 294
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=86.43 E-value=56 Score=35.85 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 424 LQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 424 ~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k 486 (896)
.+|..-++--++++.....|.+=+.+|+..++..+.-+.=|++++.+...+|..|...++.+.
T Consensus 243 ~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~s 305 (330)
T KOG2991|consen 243 IELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVS 305 (330)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333444445566666666666677777777777777778888888888888887777766
No 295
>PRK10698 phage shock protein PspA; Provisional
Probab=86.39 E-value=51 Score=35.42 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKR 467 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqke 467 (896)
+..++..++.....+..|...+..|..+|.+.+.+...|..+
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555544444333
No 296
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.21 E-value=67 Score=36.57 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 319 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (896)
Q Consensus 319 ~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~e 353 (896)
..-|+++.+.|..+|+=.......++....+++.+
T Consensus 141 t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~q 175 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQ 175 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666665555555555444444443
No 297
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.00 E-value=50 Score=34.94 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+-.++..++..+..+...+......+..|...+..++..|.+++
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666655555
No 298
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.77 E-value=53 Score=34.97 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANE 345 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLek 345 (896)
+..||++.+..+.-+-++|-. |...+.+++..+...+..+..+..
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~-------Lr~ql~e~~~~l~~~~~~~~~l~~ 59 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVS-------LRAQLRELRAELRNKESQIQELQD 59 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444444444444333 333333444444444444444433
No 299
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.57 E-value=78 Score=36.73 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=32.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHh
Q 002652 507 ATRDLDFERRRLKAARERIMLRETQL-RAFYSTTEEISVLFARQQEQLKAMQ 557 (896)
Q Consensus 507 a~reLE~Ek~rLq~~rerL~~~eqq~-ka~iek~EEiee~fkk~~~qL~~lq 557 (896)
....++....++..........+..+ .+|-+..+-|+.+++.+..+|..|+
T Consensus 337 ~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 337 TLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35666666666666655555555555 3455667777778888877776653
No 300
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=85.21 E-value=67 Score=35.66 Aligned_cols=87 Identities=23% Similarity=0.265 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 002652 418 AEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELE-------NEIKKLREELESEKQAAR 490 (896)
Q Consensus 418 ~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE-------~EireLe~ELE~~k~~~~ 490 (896)
.++.++.-+..+..+++.++..+.++......|+.+|+..+......++++..++ .++.+|+.||..+-+.+.
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~ 242 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYV 242 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666666666666666666666666666555555555555444 346666666666553333
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 491 EVAWAKVSGLELDIL 505 (896)
Q Consensus 491 Ee~~~ki~~LE~Eie 505 (896)
+... .+.-|+.+++
T Consensus 243 ~kfR-Nl~yLe~qle 256 (267)
T PF10234_consen 243 EKFR-NLDYLEHQLE 256 (267)
T ss_pred HHHH-hHHHHHHHHH
Confidence 3333 3335555554
No 301
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=85.08 E-value=1.1e+02 Score=38.21 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=17.1
Q ss_pred CCccccCCCCCCCCCCCCCcCCCCCCC
Q 002652 636 GDRTCKGGFGSDIDGVGTGPILEGDPI 662 (896)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (896)
|+-+-+|-+---|+|--.+.-+|--|-
T Consensus 1164 p~~~k~gmWyaHFdGq~I~RQm~l~~~ 1190 (1259)
T KOG0163|consen 1164 PDNTKRGMWYAHFDGQWIARQMELHPD 1190 (1259)
T ss_pred CCCCccceEEEecCcHHHHhhheecCC
Confidence 444445666667777777777766553
No 302
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.55 E-value=10 Score=44.78 Aligned_cols=37 Identities=35% Similarity=0.496 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVER 278 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r 278 (896)
|-||.|-.+...++.++..+....+.|..+.+.++.+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7799999999999999888888888887777666555
No 303
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.39 E-value=1.2e+02 Score=37.91 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=34.9
Q ss_pred HHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 451 ETQVCKEQ-NVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDIL 505 (896)
Q Consensus 451 dk~LeEek-~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie 505 (896)
+..++.++ .....|++++++...+++.++.+|-.....+.++-......+..|++
T Consensus 767 ~~~vd~~~~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~ 822 (1104)
T COG4913 767 DDIVDIERIEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELD 822 (1104)
T ss_pred hhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHh
Confidence 33333333 45556788888888889998888776443555555555555555554
No 304
>PTZ00121 MAEBL; Provisional
Probab=84.38 E-value=1.7e+02 Score=39.50 Aligned_cols=11 Identities=45% Similarity=0.504 Sum_probs=5.9
Q ss_pred CCcCccccccc
Q 002652 607 GEASTTEKHDC 617 (896)
Q Consensus 607 ~~~~~~~~~~~ 617 (896)
+++...++|--
T Consensus 1844 ~~~~~~~~~~~ 1854 (2084)
T PTZ00121 1844 EEADAFEKHKF 1854 (2084)
T ss_pred hhhhHhhhhcc
Confidence 45555566643
No 305
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=84.26 E-value=1.7 Score=53.34 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCCCceee
Q 002652 31 ASQSSSSHPPHQNPNATSPKKTVVPSHFVFW 61 (896)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (896)
+++-+.|.||.|+|+.+.|++++++--|+.+
T Consensus 538 G~g~pppPppPPlpggag~PPPPpplPg~aG 568 (1102)
T KOG1924|consen 538 GTGPPPPPPPPPLPGGAGPPPPPPPLPGIAG 568 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCcccC
Confidence 3444445556677877776665555554433
No 306
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=83.73 E-value=38 Score=38.60 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAE 314 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~e 314 (896)
-++.++.+++.++...+..+.+
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555553
No 307
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.65 E-value=58 Score=33.65 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 347 MKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLET 390 (896)
Q Consensus 347 ik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El 390 (896)
...++..+.+|+..+...++.....+....+.|+..+.+++.++
T Consensus 53 ~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 53 EYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333333333333344444444444433
No 308
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.63 E-value=42 Score=37.18 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 002652 548 RQQEQLKAMQ 557 (896)
Q Consensus 548 k~~~qL~~lq 557 (896)
++..=|..|+
T Consensus 160 KLEsLLqsME 169 (305)
T PF15290_consen 160 KLESLLQSME 169 (305)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 309
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=83.62 E-value=88 Score=35.73 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=23.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 453 QVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDI 504 (896)
Q Consensus 453 ~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Ei 504 (896)
.+++.......++..+.+.+.++.+++..|..+. ..++.+......|+.++
T Consensus 222 ~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~-~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 222 KLEEAEAELEEAEEQLAEKQAELAELEEKLAALQ-KEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555555555555544 44444444444444443
No 310
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=83.22 E-value=22 Score=32.31 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002652 474 EIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 523 (896)
Q Consensus 474 EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~re 523 (896)
.-.+++..+...- .+...+..+|-.|+..+.+.+..|+.+..+|+.+.+
T Consensus 26 ~~~e~e~ki~~Qi-~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQI-QEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 455555667777778888888888888888866543
No 311
>PRK11519 tyrosine kinase; Provisional
Probab=82.96 E-value=59 Score=40.83 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 002652 498 SGLELDILAATRDLDFERRRLKA 520 (896)
Q Consensus 498 ~~LE~Eieka~reLE~Ek~rLq~ 520 (896)
..|+.+.+.+...|+.-.+++++
T Consensus 373 ~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 373 VRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433
No 312
>PRK10698 phage shock protein PspA; Provisional
Probab=82.91 E-value=73 Score=34.28 Aligned_cols=49 Identities=16% Similarity=0.056 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002652 474 EIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 523 (896)
Q Consensus 474 EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~re 523 (896)
.+..|+.++.... ...+.+...+..|+..|..++...+.-..|.+.+..
T Consensus 100 ~~~~l~~~~~~~~-~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 100 LIATLEHEVTLVD-ETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 444444444444444444444444444444444333
No 313
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.80 E-value=66 Score=33.69 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.5
Q ss_pred HHHhHHHHH
Q 002652 357 LKTQLDEER 365 (896)
Q Consensus 357 Le~qLEeEr 365 (896)
+...|++++
T Consensus 65 ~l~rLeEEq 73 (182)
T PF15035_consen 65 ALIRLEEEQ 73 (182)
T ss_pred HHHHHHHHH
Confidence 333443433
No 314
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=82.69 E-value=62 Score=36.89 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=7.0
Q ss_pred CCCCCccEEEEEcc
Q 002652 187 PPQHDLAFAFVFRD 200 (896)
Q Consensus 187 dp~~~~af~FVF~d 200 (896)
+|.|.....|++..
T Consensus 27 ~p~Y~s~a~~~v~~ 40 (362)
T TIGR01010 27 SDRYVSESSFVVRS 40 (362)
T ss_pred cccceEEEEEEEec
Confidence 45555445555543
No 315
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=82.56 E-value=77 Score=34.30 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 316 SRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 316 ~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
-.++..++..+..+...+.........+...+..|+..|.+++
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433
No 316
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.55 E-value=1.4e+02 Score=37.40 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002652 341 TEANEIMKSQKVTIDELKTQLDEERNLRRVD 371 (896)
Q Consensus 341 ~eLekeik~LE~eI~ELe~qLEeEr~~~~EE 371 (896)
.+++.+...+.+..+++-..|...+.+..++
T Consensus 892 ~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e 922 (1259)
T KOG0163|consen 892 REMNSEYDVAVKNYEKLVKRLDSKEQQQIEE 922 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3555555555555555555555433333333
No 317
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=82.38 E-value=20 Score=38.46 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRK 256 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~ 256 (896)
++++..|-.+...++.
T Consensus 113 I~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 113 IRRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555555553
No 318
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.19 E-value=1.3e+02 Score=36.65 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 445 kk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k 486 (896)
.+|+.|+..+.--+.....|.+++..+...+.++...++.+.
T Consensus 501 ~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~ 542 (852)
T KOG4787|consen 501 LKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLA 542 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHH
Confidence 444544444443344455566666766666777777777766
No 319
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=82.12 E-value=27 Score=36.94 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=27.6
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 224 NKRLKGIGICSPDGPLSLDDFRSLQRSNTELRKQLESQVLEI 265 (896)
Q Consensus 224 s~~~sG~~~sa~~~~~~ldkvr~Le~e~~eL~~qlee~~~~i 265 (896)
+|.++|+-||+..+.- =++.+|.++++.|...+.......
T Consensus 80 s~~~~gTdfS~~~~~d--wEevrLkrELa~Le~~l~~~~~~~ 119 (195)
T PF12761_consen 80 SYKEKGTDFSATEGTD--WEEVRLKRELAELEEKLSKVEQAA 119 (195)
T ss_pred CCCCCCCCCCCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999998865522 344567888888887766665553
No 320
>PF14992 TMCO5: TMCO5 family
Probab=81.94 E-value=78 Score=35.32 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENR 273 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~ 273 (896)
.+.++|-..|..|-.-+.+...++-+|.+++.
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888777777763
No 321
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=81.93 E-value=73 Score=33.59 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
+..|+.-|...+.++...+.-.......|.+....+...+.++..+...+...+.+++.
T Consensus 111 ~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 111 LETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433333333444444333333344444444444444433333
No 322
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.93 E-value=20 Score=31.67 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~e 353 (896)
++..+..|+.+++-+.+.+.-....+..|..+....-.+|..+-..+.+|..++..+.++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444444444444444444444444444444444444433333
No 323
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=81.88 E-value=85 Score=34.32 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=30.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 457 EQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILA 506 (896)
Q Consensus 457 ek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eiek 506 (896)
|+..++.+..++.+.+.+....+.+-...- ..+..+...+..|+..+..
T Consensus 119 wqEmLn~A~~kVneAE~ek~~ae~eH~~~~-~~~~~ae~~v~~Lek~lkr 167 (239)
T PF05276_consen 119 WQEMLNHATQKVNEAEQEKTRAEREHQRRA-RIYNEAEQRVQQLEKKLKR 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666665555554 5666677777777776654
No 324
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.65 E-value=1e+02 Score=35.11 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 412 INKLQIAEKQSSLQVESLKLKLD 434 (896)
Q Consensus 412 l~KLqE~EKklr~elEdLq~eLE 434 (896)
+.+-+....+++..+.||.-++.
T Consensus 196 l~kRQ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 196 LDKRQAYIGKLESKVQDLMYEIR 218 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443
No 325
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.43 E-value=45 Score=36.96 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQ 261 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~ 261 (896)
+..+|.|..++...-..|=.+
T Consensus 119 lk~~R~Laseit~~GA~Lydl 139 (267)
T PF10234_consen 119 LKAARQLASEITQRGASLYDL 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666544443
No 326
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=81.39 E-value=2.6 Score=47.51 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 300 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 300 ELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+++..|..+...+..+...+..+...+..+...+......+..|+..+..++-.|.+|+
T Consensus 74 ~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLk 132 (326)
T PF04582_consen 74 DMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLK 132 (326)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 33333333333333333333344444444444444444444444444444444444444
No 327
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.24 E-value=1.3e+02 Score=36.20 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002652 444 DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 523 (896)
Q Consensus 444 Ekk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~re 523 (896)
..++.+|-..+....++...+..+-+.+..++...+++.+.+. ....++...+..|+.|+...++-|+.+..-|....-
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~-eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa 497 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLE-EELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555555555555544444445555555555555555555555 567777777888888888888888888777765544
Q ss_pred HHHHHHHHHH
Q 002652 524 RIMLRETQLR 533 (896)
Q Consensus 524 rL~~~eqq~k 533 (896)
.+-+....++
T Consensus 498 smNeqL~~Q~ 507 (518)
T PF10212_consen 498 SMNEQLAKQR 507 (518)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 328
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=81.16 E-value=64 Score=40.60 Aligned_cols=24 Identities=0% Similarity=0.079 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 372 RENAEADLKAAVQKSQLETQEKLK 395 (896)
Q Consensus 372 LEe~~~eLk~qIqkl~~El~eerk 395 (896)
+++++..++.++..++.++++-++
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444333
No 329
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.11 E-value=24 Score=33.14 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKH---EMEDLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEs---EleEL~eqLee~e~~~~eLekeik~LE~eI~EL 357 (896)
+-.++..++.+++.+.++...+...+.++.. +..+|..++..+...+..++.++..++.++..+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555555555544 344555555555555555555555554444443
No 330
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.98 E-value=1.6e+02 Score=36.92 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHH
Q 002652 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM-KSQKVTIDELKTQLDE 363 (896)
Q Consensus 295 E~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekei-k~LE~eI~ELe~qLEe 363 (896)
+..+.+++.+-.++++.|+..+..-.++..++...++.|..+...+-.++--. ..|...+.++..+|..
T Consensus 835 E~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~ 904 (1480)
T COG3096 835 EAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDE 904 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHH
Confidence 44555666666666666665555555555544444444444433333222111 1344455555544444
No 331
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=80.84 E-value=3.3 Score=50.90 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=9.5
Q ss_pred cCCCcccccceEEEEe
Q 002652 118 IDSNAVSANHCKIYRK 133 (896)
Q Consensus 118 i~~~~ISr~Hc~I~~~ 133 (896)
|....+|..-|.+...
T Consensus 634 I~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 634 IVPRDLSENCFWVKVN 649 (1102)
T ss_pred cCccccCccceeeecc
Confidence 5555677776665443
No 332
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=80.78 E-value=1.2e+02 Score=35.53 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 338 QSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQI 417 (896)
Q Consensus 338 ~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE 417 (896)
.+...+.+-+.++-+.++.|+ -.|....++|+.|.+++. +.....-+......++.+
T Consensus 235 ~Qnk~akehv~km~kdle~Lq------------~aEqsl~dlQk~Lekar~-----------e~rnvavek~~lerkl~e 291 (575)
T KOG4403|consen 235 RQNKKAKEHVNKMMKDLEGLQ------------RAEQSLEDLQKRLEKARE-----------EQRNVAVEKLDLERKLDE 291 (575)
T ss_pred hhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-----------hhhchhhhhhhHHHHHhh
Q ss_pred HHH--HHHHHH--HHHHHHHHHHHHHHHhHHHHH------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002652 418 AEK--QSSLQV--ESLKLKLDETRERLVTSDNKV------------RLLETQVCKEQNVSASWKKRVEELENEIKKLREE 481 (896)
Q Consensus 418 ~EK--klr~el--EdLq~eLE~lra~l~~lEkk~------------reLdk~LeEek~~~~~lqkel~elE~EireLe~E 481 (896)
+-+ +++.-+ +..+++|+.+|..+...|+++ ..+-+.--+...+. ++++...++.+++...+.
T Consensus 292 a~rl~elreg~e~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~--~~kkrqnaekql~~Ake~ 369 (575)
T KOG4403|consen 292 APRLSELREGVENETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQY--YNKKRQNAEKQLKEAKEM 369 (575)
T ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHH
Q ss_pred HHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002652 482 LESEKQA---------------AREVAWAKVSGLELDILAATRDLDFERRRLKA 520 (896)
Q Consensus 482 LE~~k~~---------------~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~ 520 (896)
.++++ + ..+.++-+|-.+...|...-..|-....|-+.
T Consensus 370 ~eklk-KKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQ 422 (575)
T KOG4403|consen 370 AEKLK-KKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQ 422 (575)
T ss_pred HHHHH-HhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 333
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=80.64 E-value=1.2e+02 Score=35.43 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 330 NDRLSASMQSCTEANEIMKSQKVTIDE 356 (896)
Q Consensus 330 ~eqLee~e~~~~eLekeik~LE~eI~E 356 (896)
...+..+..++.........|+.++.+
T Consensus 163 ~~~~~~a~~Ql~~nr~ar~~Le~Dl~d 189 (421)
T KOG2685|consen 163 KKTLERAEEQLRLNREARQNLERDLSD 189 (421)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhh
Confidence 333333333333333333344444333
No 334
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=80.51 E-value=79 Score=33.06 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002652 426 VESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVE 469 (896)
Q Consensus 426 lEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~ 469 (896)
|+.|..+.-++.+.-...+.+++.|+.+|.++.-..--++.+..
T Consensus 122 Le~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAa 165 (178)
T PF14073_consen 122 LEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAA 165 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666677788899999988888554444444443
No 335
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.49 E-value=52 Score=32.55 Aligned_cols=52 Identities=13% Similarity=0.328 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 445 NKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKV 497 (896)
Q Consensus 445 kk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki 497 (896)
.|+..++.+|++........+.++.++...+..+..++..+. .....++.+|
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~-~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ-QMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 445555555555544444444444444444444444444444 3334444443
No 336
>PLN03188 kinesin-12 family protein; Provisional
Probab=80.41 E-value=2.1e+02 Score=38.03 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 247 LQRSNTELRKQLESQ 261 (896)
Q Consensus 247 Le~e~~eL~~qlee~ 261 (896)
|.+++..|+.||+-+
T Consensus 991 ll~eI~dlr~qL~~~ 1005 (1320)
T PLN03188 991 LLEEIQDLRSQLQYY 1005 (1320)
T ss_pred HHHHHHHHHHHHHhh
Confidence 557777788777766
No 337
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=80.38 E-value=58 Score=38.11 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
|+|.+.+.+.++.++++ -..--+.|+..|+..|...+.+++
T Consensus 253 LqEEr~R~erLEeqlNd---~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 253 LQEERYRYERLEEQLND---LTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444333 222234445555555554444443
No 338
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=80.30 E-value=1.1e+02 Score=38.33 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=7.5
Q ss_pred CCCcccccccCCCCC
Q 002652 661 PIGTEQVHETESPGI 675 (896)
Q Consensus 661 ~~~~~~~~~~~~~~~ 675 (896)
--|+|+|-.++..|.
T Consensus 547 LAGSER~~~s~~tG~ 561 (670)
T KOG0239|consen 547 LAGSERVSKSGVTGE 561 (670)
T ss_pred cccCcccCcCCCchh
Confidence 345566555444443
No 339
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.30 E-value=56 Score=34.44 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 314 el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
.+...+.+|+..+.+|+++...+.........++.+++..+..++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~ 172 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALK 172 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443333
No 340
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.18 E-value=36 Score=43.17 Aligned_cols=6 Identities=33% Similarity=0.396 Sum_probs=3.9
Q ss_pred EEEEeC
Q 002652 150 VCLKDT 155 (896)
Q Consensus 150 ~~L~D~ 155 (896)
++|.|-
T Consensus 410 LvLlDE 415 (782)
T PRK00409 410 LVLFDE 415 (782)
T ss_pred EEEecC
Confidence 667773
No 341
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.06 E-value=9 Score=33.64 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEAN 344 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLe 344 (896)
++..+.+|..++.-.+..+.+|+..+.+.+.+|..|..++..+..++.++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666666666666666666666666666655544
No 342
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=79.96 E-value=77 Score=35.18 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 301 LRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVT 353 (896)
Q Consensus 301 Lq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~e 353 (896)
...++...+.++......+.+.+.++.++..++.+...++.+|..+-.++...
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~ 250 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKT 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444443333
No 343
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=79.87 E-value=53 Score=36.39 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+......++....++...+..+.++...+.+...+|..++.....+.+.+..++..+..|.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555555555566666666666677777777777777777777777777776664
No 344
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.11 E-value=49 Score=42.00 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=6.8
Q ss_pred eEEEEeCCCCce
Q 002652 149 SVCLKDTSTNGT 160 (896)
Q Consensus 149 ~~~L~D~StNGT 160 (896)
.++|.|--.+||
T Consensus 404 sLvLlDE~g~Gt 415 (771)
T TIGR01069 404 SLVLFDELGAGT 415 (771)
T ss_pred cEEEecCCCCCC
Confidence 377788544443
No 345
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=79.05 E-value=1.8e+02 Score=36.33 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 432 KLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLEL 502 (896)
Q Consensus 432 eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~ 502 (896)
++..+......++.++..-+..++........+.+...+...+.-.++++|......+-..+..++..++.
T Consensus 515 E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEs 585 (739)
T PF07111_consen 515 ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVES 585 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455554445555555555555556666666666666666666652222244445554443
No 346
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.03 E-value=1e+02 Score=36.09 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=7.6
Q ss_pred hhhhhhhhhhhhccc
Q 002652 733 DTIRTADLLASEVAG 747 (896)
Q Consensus 733 ~~~~~~~~~~~~~~~ 747 (896)
||+.+-||=+.|+-+
T Consensus 363 dtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQ 377 (459)
T ss_pred CceeeeecccccEEE
Confidence 355555555555543
No 347
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=78.84 E-value=3.9 Score=46.08 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+...+..++..+..+...+..+...+...+..|..|+..+..+...+..|...+..+...|.+|+
T Consensus 82 LsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 82 LSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444
No 348
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.78 E-value=87 Score=37.38 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 002652 427 ESLKLKLDETRERLVTSDNKVRLL 450 (896)
Q Consensus 427 EdLq~eLE~lra~l~~lEkk~reL 450 (896)
-+.-.++++++.++.+|.+|+=.+
T Consensus 372 ad~~~KI~~~k~r~~~Ls~RiLRv 395 (508)
T KOG3091|consen 372 ADAVAKIEEAKNRHVELSHRILRV 395 (508)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 349
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=78.74 E-value=1.9e+02 Score=36.40 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 424 LQVESLKLKLDETRERLVTSDNKVRLLET--------QVCKEQNVSASWKKRVEELENEIKKLREELES 484 (896)
Q Consensus 424 ~elEdLq~eLE~lra~l~~lEkk~reLdk--------~LeEek~~~~~lqkel~elE~EireLe~ELE~ 484 (896)
..+=.|..++.=+++.|.-|=.++..|.. ..++...++..|.++..-++.+++.|++||-+
T Consensus 199 ~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELie 267 (683)
T PF08580_consen 199 SSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIE 267 (683)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444555555566666544455555444 34444444444555555555555555555444
No 350
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=78.64 E-value=72 Score=40.60 Aligned_cols=7 Identities=71% Similarity=1.189 Sum_probs=4.2
Q ss_pred CCCCCCC
Q 002652 648 IDGVGTG 654 (896)
Q Consensus 648 ~~~~~~~ 654 (896)
|||.||+
T Consensus 739 IHGkGtG 745 (782)
T PRK00409 739 IHGKGTG 745 (782)
T ss_pred EcCCChh
Confidence 5666653
No 351
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.58 E-value=34 Score=37.92 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 002652 344 NEIMKSQKVTIDEL 357 (896)
Q Consensus 344 ekeik~LE~eI~EL 357 (896)
.++|+.|++-|+-.
T Consensus 123 RkEIkQLkQvieTm 136 (305)
T PF15290_consen 123 RKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 352
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=78.46 E-value=1.7e+02 Score=35.70 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 002652 509 RDLDFERRRL 518 (896)
Q Consensus 509 reLE~Ek~rL 518 (896)
..|..+...|
T Consensus 430 ~p~~~el~~l 439 (582)
T PF09731_consen 430 RPFEDELRAL 439 (582)
T ss_pred CCHHHHHHHH
Confidence 4444444443
No 353
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=78.45 E-value=1e+02 Score=33.10 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 243 DFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQ 322 (896)
Q Consensus 243 kvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kL 322 (896)
.+......+.....+++-....+.-|+.=.+--......- ...++..+..++..+..+++++.+++......
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~--------n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~ 169 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIH--------NEQLEAMLKRLEKELAKLKKEIEEVNRERKRR 169 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666677666665555433322110000010000 13344444444444445555555444333333
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 323 KH----EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 323 Es----EleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+. ++..|..+-...-.++-+++..+..|+.+|..++
T Consensus 170 Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 170 QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 3344444444444455555555555555555544
No 354
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.21 E-value=1.3e+02 Score=35.89 Aligned_cols=7 Identities=14% Similarity=0.079 Sum_probs=3.0
Q ss_pred ceeecCc
Q 002652 159 GTYVNCE 165 (896)
Q Consensus 159 GTfVNg~ 165 (896)
.+|.+|.
T Consensus 156 ~~~~~g~ 162 (508)
T KOG3091|consen 156 APYKFGA 162 (508)
T ss_pred CccccCC
Confidence 4444443
No 355
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.98 E-value=1.5e+02 Score=34.87 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 541 EISVLFARQQEQLKA 555 (896)
Q Consensus 541 Eiee~fkk~~~qL~~ 555 (896)
++...|.++..++..
T Consensus 404 ~~~~~r~e~~~~i~a 418 (446)
T KOG4438|consen 404 EIARGREELESQIVA 418 (446)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 356
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.93 E-value=1.3e+02 Score=34.21 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 462 ASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILA 506 (896)
Q Consensus 462 ~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eiek 506 (896)
.++..+...++.+++.+-.|.+++. .+++-...++..|-.|+.-
T Consensus 136 Ek~~~q~~qLe~d~qs~lDEkeEl~-~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 136 EKLREQIEQLERDLQSLLDEKEELV-TERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3446677777888888888888887 8888888999999988873
No 357
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.65 E-value=97 Score=32.52 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 327 EDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLE 389 (896)
Q Consensus 327 eEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~E 389 (896)
.++..++..++..+.+|...+..++..++.+++..++.+........+.+..|+.+.+.+..+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333333322233334455555555544443
No 358
>PRK00295 hypothetical protein; Provisional
Probab=77.61 E-value=16 Score=32.16 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEA 343 (896)
Q Consensus 295 E~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eL 343 (896)
+.++.+|..++.-.+..+.+|+..+.+.+.+|..|..+|..+..++.++
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555666666666666666666655555555555444443
No 359
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.60 E-value=80 Score=32.39 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDR 332 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eq 332 (896)
+..++..|+.+...|...
T Consensus 94 L~~~v~~Le~e~r~L~~~ 111 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELK 111 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 360
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.50 E-value=23 Score=36.14 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLN 330 (896)
Q Consensus 315 l~~k~~kLEsEleEL~ 330 (896)
+...+..++.++..|.
T Consensus 91 l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 91 LKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333333333
No 361
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=77.47 E-value=2.2e+02 Score=36.53 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 002652 278 RHEKEMKEMKESV 290 (896)
Q Consensus 278 r~E~El~El~e~l 290 (896)
+++++|.+++++-
T Consensus 950 r~eKeL~~LrKkh 962 (1189)
T KOG1265|consen 950 RHEKELRDLRKKH 962 (1189)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 362
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=77.42 E-value=16 Score=43.76 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002652 311 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (896)
Q Consensus 311 eL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr 365 (896)
+|.+++.+..+|+++|++++-.+++++..+-..+.++.+|+..|+..++++++-+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666666666666666544
No 363
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=77.41 E-value=1e+02 Score=32.56 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002652 292 ISYLHQLKVLRDMLDAKQK 310 (896)
Q Consensus 292 kklE~QLeELq~kLee~ek 310 (896)
..++..+.+-+..+...++
T Consensus 67 ~~~E~E~~~~~~el~~~E~ 85 (201)
T PF12072_consen 67 QELERELKERRKELQRLEK 85 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333333
No 364
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.35 E-value=99 Score=32.45 Aligned_cols=17 Identities=18% Similarity=0.084 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHHH
Q 002652 239 LSLDDFRSLQRSNTELR 255 (896)
Q Consensus 239 ~~ldkvr~Le~e~~eL~ 255 (896)
.+-.+|-.|...+...-
T Consensus 30 ~tR~dVi~L~e~Ld~~L 46 (189)
T PF10211_consen 30 ATRQDVIQLQEWLDKML 46 (189)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34577877777665443
No 365
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.99 E-value=23 Score=42.57 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
.+++.|+.++..|+.++.....+++.++..+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888887777777666666655555543
No 366
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=76.98 E-value=70 Score=40.61 Aligned_cols=7 Identities=57% Similarity=1.142 Sum_probs=4.4
Q ss_pred CCCCCCC
Q 002652 648 IDGVGTG 654 (896)
Q Consensus 648 ~~~~~~~ 654 (896)
|||-||+
T Consensus 728 IHGkGtG 734 (771)
T TIGR01069 728 IHGKGSG 734 (771)
T ss_pred EcCCChh
Confidence 6666654
No 367
>PRK04406 hypothetical protein; Provisional
Probab=76.88 E-value=18 Score=32.49 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
++.++.+|..++.=.+..+.+|+..+.+.+.+|..|.++|..+..++.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666666666666665555555555544443
No 368
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=76.64 E-value=3.1 Score=51.10 Aligned_cols=39 Identities=31% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (896)
Q Consensus 295 E~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqL 333 (896)
..++..|...++.+.....+...++..|..++..|...|
T Consensus 83 ~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~L 121 (619)
T PF03999_consen 83 KEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEEL 121 (619)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444455555555554444445555555555555544
No 369
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.43 E-value=70 Score=31.64 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 245 RSLQRSNTELRKQLESQVLEIDKLR 269 (896)
Q Consensus 245 r~Le~e~~eL~~qlee~~~~i~~Lr 269 (896)
|.|....+.+-++|+...+.+...+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tK 63 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTK 63 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666555555543333
No 370
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=76.20 E-value=1.2e+02 Score=32.84 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 321 EQKHEMEDLNDRLSA 335 (896)
Q Consensus 321 kLEsEleEL~eqLee 335 (896)
.++.++.++...+..
T Consensus 35 d~~~~l~~ar~~~A~ 49 (225)
T COG1842 35 DMESELAKARQALAQ 49 (225)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 371
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.16 E-value=2.2e+02 Score=35.78 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 002652 537 STTEEISVLFARQQEQLKAMQ 557 (896)
Q Consensus 537 ek~EEiee~fkk~~~qL~~lq 557 (896)
++. +.+..+++++.+|-+|.
T Consensus 294 ~~~-~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 294 EKK-KEKEERRKLHNEILELK 313 (670)
T ss_pred HHH-HHHHHHHHHHHHHHHhh
Confidence 444 55566777777777665
No 372
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=75.64 E-value=2.7e+02 Score=36.52 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEER 365 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr 365 (896)
...|+.+++..+..|......+..++.++.+++.+|...+..+..+.+.-..+......|.+.++...
T Consensus 478 ~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~ 545 (1041)
T KOG0243|consen 478 KELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQ 545 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777777777777777777777777776666665555555666666666644
No 373
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.08 E-value=1.1e+02 Score=38.66 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=17.2
Q ss_pred ccccCc-cccccccc-CccccccCCCCcCccccccccccc
Q 002652 584 RTIVGE-KLPNGHHS-NSAAKADSSGEASTTEKHDCDIRS 621 (896)
Q Consensus 584 amSGGE-Ks~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 621 (896)
+-.||| ||++.+.= ...|..+ .-+=--|||.|.
T Consensus 538 S~~~g~GKTtva~nLA~~la~~G-----~rVLlID~D~r~ 572 (726)
T PRK09841 538 GATPDSGKTFVSSTLAAVIAQSD-----QKVLFIDADLRR 572 (726)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-----CeEEEEeCCCCC
Confidence 334788 99887721 1112111 123356888885
No 374
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.99 E-value=29 Score=35.37 Aligned_cols=59 Identities=31% Similarity=0.486 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 428 SLKLKLDETRERLVTSDNKVRLLETQVCKEQNVS--ASWKKRVEELENEIKKLREELESEK 486 (896)
Q Consensus 428 dLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~--~~lqkel~elE~EireLe~ELE~~k 486 (896)
.+..++..++..+..+....+.|...|....... .++...+.+++.++..|+..|..++
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333322 2345555666666666666665554
No 375
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.87 E-value=48 Score=31.53 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNE 271 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~e 271 (896)
+..+......++.++......+..++.+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~ 32 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQ 32 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555554444444444444333
No 376
>PRK00736 hypothetical protein; Provisional
Probab=74.81 E-value=19 Score=31.69 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE 342 (896)
Q Consensus 296 ~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~e 342 (896)
.++.+|..++.-.+..+.+|+..+.+.+.+|..|.++|..+..++.+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666666666666666655555555555554443
No 377
>PRK11519 tyrosine kinase; Provisional
Probab=74.68 E-value=67 Score=40.38 Aligned_cols=36 Identities=19% Similarity=0.082 Sum_probs=18.9
Q ss_pred CcccccCc-ccccccccCccccccCCCCcCccccccccccc
Q 002652 582 NSRTIVGE-KLPNGHHSNSAAKADSSGEASTTEKHDCDIRS 621 (896)
Q Consensus 582 leamSGGE-Ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (896)
+-+-.||| ||++.. |- |.--... -.-|=--|||.|.
T Consensus 531 vts~~~geGKTt~a~-nL-A~~la~~--g~rvLlID~Dlr~ 567 (719)
T PRK11519 531 MTGVSPSIGKTFVCA-NL-AAVISQT--NKRVLLIDCDMRK 567 (719)
T ss_pred EECCCCCCCHHHHHH-HH-HHHHHhC--CCcEEEEeCCCCC
Confidence 34445888 998866 21 1111111 1224457899886
No 378
>PRK04325 hypothetical protein; Provisional
Probab=74.52 E-value=19 Score=32.18 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 295 E~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
+.++.+|..++.=.+..+.+|+..+.+.+.+|..|.++|..+..++.
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555444444443
No 379
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.78 E-value=1.1e+02 Score=31.34 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (896)
Q Consensus 312 L~el~~k~~kLEsEleEL~eqLee~e~~~~eLekei 347 (896)
+..+......|+..+..+..+...++..-.++....
T Consensus 98 v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~ 133 (158)
T PF09744_consen 98 VEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEY 133 (158)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHH
Confidence 334444444444444444444444444444433333
No 380
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=73.74 E-value=1.3e+02 Score=32.05 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKH 324 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~el~~k~~kLEs 324 (896)
.++..+..|+..++..+..-..+..++..++.
T Consensus 61 dLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~ 92 (201)
T PF11172_consen 61 DLEDKYNALNDEYESSEDAAEEVSDRIDAVED 92 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 381
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=73.59 E-value=1.3e+02 Score=31.84 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002652 376 EADLKAAVQKSQLETQE 392 (896)
Q Consensus 376 ~~eLk~qIqkl~~El~e 392 (896)
+..++..+..++.++..
T Consensus 161 i~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 382
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=73.27 E-value=78 Score=31.32 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 332 RLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 332 qLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
-+.....-..+|.+++...+..|.+|+
T Consensus 94 llk~y~~~~~~L~k~I~~~e~iI~~fe 120 (126)
T PF09403_consen 94 LLKKYKDLLNKLDKEIAEQEQIIDNFE 120 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555554
No 383
>PRK02119 hypothetical protein; Provisional
Probab=73.21 E-value=23 Score=31.63 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE 342 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~e 342 (896)
++.++.+|..++.=.+..+.+|+..+.+.+.+|..|.++|..+..++.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555555444433
No 384
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=73.07 E-value=1.3e+02 Score=33.43 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDR 372 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EEL 372 (896)
++..=|.+.-.........+-.....+...+.++.....+.+.++.....+.......+..+.+-++.+++....+.+.+
T Consensus 173 ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekm 252 (297)
T PF02841_consen 173 KAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKM 252 (297)
T ss_dssp THHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002652 373 ENAEADLKAAVQKSQLETQEKLKRLS-DAASRRELEQQEVINKLQ 416 (896)
Q Consensus 373 Ee~~~eLk~qIqkl~~El~eerkk~e-ee~~~~ieElee~l~KLq 416 (896)
+.....+.....++......+..+.. +........++..+..|+
T Consensus 253 e~e~~~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 253 EEEREQLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 385
>PRK02793 phi X174 lysis protein; Provisional
Probab=72.98 E-value=21 Score=31.72 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 295 LHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE 342 (896)
Q Consensus 295 E~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~e 342 (896)
+.++.+|..++.=.+..+.+|+..+.+.+.+|..|.++|..+..++.+
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555555544444433
No 386
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.79 E-value=1e+02 Score=30.32 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
..+..+-.+...|..++.........++.++
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL 36 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQL 36 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666555544444443
No 387
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.63 E-value=2.3e+02 Score=34.36 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 322 QKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAA 401 (896)
Q Consensus 322 LEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~ 401 (896)
....|.+|..++..+.++..-...+.. .|...|+.... .++.+...+..+...|..++.|+.--+..|+.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~-------aL~~rL~~aE~-ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~-- 487 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECR-------ALQKRLESAEK-EKESLEEELKEANQNISRLQDELETTRRNYEE-- 487 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--
Confidence 344555555555555555554444444 44444443321 11223333455566777777777777777773
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 402 SRRELEQQEVINKLQIAEKQSSLQVESLK 430 (896)
Q Consensus 402 ~~~ieElee~l~KLqE~EKklr~elEdLq 430 (896)
++..+-+.+..|.+...+.+.+++.|+
T Consensus 488 --QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 488 --QLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555556555555555555554
No 388
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=72.60 E-value=2.1e+02 Score=33.94 Aligned_cols=9 Identities=11% Similarity=0.508 Sum_probs=0.0
Q ss_pred EEEEeCCCC
Q 002652 150 VCLKDTSTN 158 (896)
Q Consensus 150 ~~L~D~StN 158 (896)
+||+|-.+|
T Consensus 42 IyI~Dp~~~ 50 (424)
T PF03915_consen 42 IYIQDPKSG 50 (424)
T ss_dssp ---------
T ss_pred eEeecCCCC
Confidence 666665444
No 389
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=71.73 E-value=86 Score=37.98 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=18.7
Q ss_pred eecccccccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 002652 219 EYVSDNKRLKGIGICSPDGPLSLDDFRSLQRSNTELR 255 (896)
Q Consensus 219 amtGgs~~~sG~~~sa~~~~~~ldkvr~Le~e~~eL~ 255 (896)
.++|++-++.-++ ++-.+|..|-.+|..|-
T Consensus 285 ~liGdvdegAdll-------GMGrEVeNLilENsqLL 314 (832)
T KOG2077|consen 285 GLIGDVDEGADLL-------GMGREVENLILENSQLL 314 (832)
T ss_pred cccccccchhhhh-------cchHHHHHHHHhhHHHH
Confidence 4566666654443 12367888888877776
No 390
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=71.67 E-value=2.9e+02 Score=35.14 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=4.0
Q ss_pred CCCCcCCC
Q 002652 651 VGTGPILE 658 (896)
Q Consensus 651 ~~~~~~~~ 658 (896)
.||+++||
T Consensus 1398 ~~tatape 1405 (1424)
T KOG4572|consen 1398 IGTATAPE 1405 (1424)
T ss_pred ccceecHH
Confidence 45555554
No 391
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.56 E-value=67 Score=30.68 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDIL 505 (896)
Q Consensus 448 reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie 505 (896)
.-|-+.+-+++.+...+...+...+..|+.++.|++.+. =.-.-+..+|..|+.|+.
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~-FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLT-FRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344445556777888888888888889999998888876 555666667767776665
No 392
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=71.50 E-value=1.8e+02 Score=32.70 Aligned_cols=20 Identities=30% Similarity=0.508 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002652 328 DLNDRLSASMQSCTEANEIM 347 (896)
Q Consensus 328 EL~eqLee~e~~~~eLekei 347 (896)
.|+.+|+.+-++..++..++
T Consensus 270 ~lNnqL~~l~q~fr~a~~~l 289 (384)
T KOG0972|consen 270 SLNNQLASLMQKFRRATDTL 289 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 393
>PRK09343 prefoldin subunit beta; Provisional
Probab=71.47 E-value=1e+02 Score=30.07 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 002652 244 FRSLQRSNTELR 255 (896)
Q Consensus 244 vr~Le~e~~eL~ 255 (896)
|+.+-.....|+
T Consensus 9 ~q~~~~~~q~lq 20 (121)
T PRK09343 9 VQAQLAQLQQLQ 20 (121)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 394
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=71.39 E-value=60 Score=28.90 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDR 332 (896)
Q Consensus 296 ~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eq 332 (896)
..+.+++..++....+...|.+++..|...+..|.++
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333444444444333333333
No 395
>PF15456 Uds1: Up-regulated During Septation
Probab=71.10 E-value=81 Score=31.08 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
+.++|..|.++...|..+++....++. ++..+
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~ 51 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKI 51 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 468888888888888877777777655 44443
No 396
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.82 E-value=1.6e+02 Score=31.93 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (896)
Q Consensus 292 kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~E 356 (896)
..+..++..+..+++-++.....+...+..++.++.+|+.++...+....++.--+.++-..+..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566666666666666666777777777777777777777777776666655544444333
No 397
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.76 E-value=14 Score=43.75 Aligned_cols=9 Identities=0% Similarity=-0.182 Sum_probs=5.5
Q ss_pred cEEEEEccc
Q 002652 193 AFAFVFRDV 201 (896)
Q Consensus 193 af~FVF~dt 201 (896)
..||+|..-
T Consensus 29 g~~~~~~~~ 37 (475)
T PRK13729 29 GALYLSDVD 37 (475)
T ss_pred ceEEEeccc
Confidence 457777643
No 398
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=70.12 E-value=2.4e+02 Score=33.52 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELR 255 (896)
Q Consensus 241 ldkvr~Le~e~~eL~ 255 (896)
+.+|+.|..++..|+
T Consensus 150 ~~Ev~~LRreLavLR 164 (424)
T PF03915_consen 150 LKEVQSLRRELAVLR 164 (424)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666665
No 399
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=70.04 E-value=1.5e+02 Score=35.19 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEE 364 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeE 364 (896)
....+.+|+.++.++..+|..+......-.-.+..++.+|..|++++..+
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 45555556666655555555554433222223333344444444333333
No 400
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=69.89 E-value=1.3e+02 Score=30.53 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002652 469 EELENEIKKLREELES 484 (896)
Q Consensus 469 ~elE~EireLe~ELE~ 484 (896)
.+...++..++.+|+-
T Consensus 62 eEetkrLa~ireeLE~ 77 (159)
T PF04949_consen 62 EEETKRLAEIREELEV 77 (159)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333334444444443
No 401
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=69.63 E-value=1.2e+02 Score=29.84 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002652 319 SAEQKHE 325 (896)
Q Consensus 319 ~~kLEsE 325 (896)
+..++.+
T Consensus 29 k~~le~q 35 (119)
T COG1382 29 KQQLEAQ 35 (119)
T ss_pred HHHHHHH
Confidence 3333333
No 402
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=68.72 E-value=1.9e+02 Score=31.76 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 002652 262 VLEIDKLRNENRVVVERHEKEMK 284 (896)
Q Consensus 262 ~~~i~~Lr~ei~~ir~r~E~El~ 284 (896)
...|..|+.++...+..|..-+.
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~ 42 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLS 42 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 403
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.37 E-value=71 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 465 KKRVEELENEIKKLREELESE 485 (896)
Q Consensus 465 qkel~elE~EireLe~ELE~~ 485 (896)
+.++.+.+.+.+.|..+|..+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334344333333
No 404
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=68.35 E-value=39 Score=32.10 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 306 DAKQKELAEISRISAEQKHEMEDLNDRL-SASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 306 ee~ekeL~el~~k~~kLEsEleEL~eqL-ee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
.+....+..+...+..++.++++|...| +++-..++...++...++.....|+.+|.+
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e 62 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556667777777777777776 666666666666666666666666655544
No 405
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.25 E-value=2.8e+02 Score=33.72 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 002652 246 SLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAE----------- 314 (896)
Q Consensus 246 ~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~e----------- 314 (896)
.++.-...|..+.+...+.+..++.+++.++++ +.++...++++..+-+.+.+.++.
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~------------a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREM------------AERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKL 394 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eer 394 (896)
+...-....+|+.-+..++..+...+..+...+++++..+......|....=.+. +.+..-++.-+.++...+.+..
T Consensus 653 l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~---~~Q~~~iqsiL~~L~~~i~~~~ 729 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS---AYQRKCIQSILKELGEHIREMV 729 (741)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc---HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 002652 395 KRLS 398 (896)
Q Consensus 395 kk~e 398 (896)
++..
T Consensus 730 k~VK 733 (741)
T KOG4460|consen 730 KQVK 733 (741)
T ss_pred HHHH
No 406
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.01 E-value=2e+02 Score=33.96 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qL 361 (896)
..++...++....+-.++..++.+++.+-.++...|.+++....++..+..++-+.-....+++
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~ 241 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQL 241 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555555555566677777777777777777777776666666655555444444433
No 407
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.90 E-value=70 Score=38.51 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=11.0
Q ss_pred hhhcccccccccCCCCCC
Q 002652 742 ASEVAGSWACSTAPSVHG 759 (896)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~ 759 (896)
.-++...+.+.+.|.++.
T Consensus 348 ~~~~~a~~~~~~vP~~~~ 365 (525)
T TIGR02231 348 SFELPAALNYRAVPSLNS 365 (525)
T ss_pred EEecccceEEEEcccCCc
Confidence 344555666777776653
No 408
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.82 E-value=1.3e+02 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNEN 272 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei 272 (896)
..++.|......|+.+++.+...+..+...+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 36 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASI 36 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655555555554443
No 409
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.64 E-value=28 Score=30.56 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 311 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (896)
Q Consensus 311 eL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~E 356 (896)
.|.+|+.++.-++.-+++|+..+..-...+..|.+.+..|...+.+
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433333
No 410
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=67.55 E-value=87 Score=27.92 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 285 EMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 285 El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
-+-+.+.+.|+.+.++.+..+...++.+.........|...+..|..++..+.....
T Consensus 10 ~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 10 SALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456777777777777777776666555555555555555554444444433
No 411
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.37 E-value=80 Score=33.16 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 421 QSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESE 485 (896)
Q Consensus 421 klr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~ 485 (896)
.++..++.|+.+++.++..+..+..++........+. ..+..+-.++.+++.++.+|+.+|..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555544444444444432211111 122223444455555555555555543
No 412
>PRK14154 heat shock protein GrpE; Provisional
Probab=67.31 E-value=1.1e+02 Score=32.66 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV 290 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l 290 (896)
+..|+.++..|++++.++.....++..++.+.+.|.++++.++...-
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a 100 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFG 100 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888889999999999999999999999999888888877665
No 413
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=67.09 E-value=2.7e+02 Score=33.07 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 002652 548 RQQEQLK 554 (896)
Q Consensus 548 k~~~qL~ 554 (896)
.+|-.|.
T Consensus 532 ~~Ymall 538 (554)
T KOG4677|consen 532 KNYMALL 538 (554)
T ss_pred HHHHHHH
Confidence 3333333
No 414
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=66.97 E-value=1.2e+02 Score=29.01 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 319 SAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 319 ~~kLEsEleEL~eqLee~e~~~~ 341 (896)
......+|..|..+|..+...+.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~ 98 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEIS 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 415
>PRK00846 hypothetical protein; Provisional
Probab=66.79 E-value=38 Score=30.69 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 294 YLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE 342 (896)
Q Consensus 294 lE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~e 342 (896)
++.++.+|..++.-.+..+.+|+..+.+.+..|..|..+|.-+..++.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555444444443
No 416
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.39 E-value=2.7e+02 Score=32.78 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=14.4
Q ss_pred cccccCcccccccCCCccc
Q 002652 622 QEEGQNTQEAEFTSGDRTC 640 (896)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~ 640 (896)
-|-++|-+-..|+++.+++
T Consensus 216 aGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 216 AGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred hccCCCcceeeecCCCceE
Confidence 3456778888888888886
No 417
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.20 E-value=3.9e+02 Score=34.55 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=7.6
Q ss_pred cccccceEEE
Q 002652 122 AVSANHCKIY 131 (896)
Q Consensus 122 ~ISr~Hc~I~ 131 (896)
..||.|++|.
T Consensus 189 qssRshAift 198 (913)
T KOG0244|consen 189 QSSRSHAIFT 198 (913)
T ss_pred hhhhhhHHHH
Confidence 4688998875
No 418
>PRK02119 hypothetical protein; Provisional
Probab=66.10 E-value=45 Score=29.78 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 311 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK 348 (896)
Q Consensus 311 eL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik 348 (896)
++.+|+.++.-++.-+++|+..+..-...+..+.+.+.
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333333333333
No 419
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.01 E-value=2.1e+02 Score=33.57 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 331 DRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 331 eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
..+..+...+.++......|+..++.|+
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455544445554444444
No 420
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=65.95 E-value=3e+02 Score=33.15 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Q 002652 535 FYSTTEEISVLFARQQEQLKAMQ 557 (896)
Q Consensus 535 ~iek~EEiee~fkk~~~qL~~lq 557 (896)
+|+++.-+-..|.++=+.|...+
T Consensus 378 Lydkl~~f~~~~~klG~~L~~a~ 400 (475)
T PRK10361 378 LYDKMRLFVDDMSAIGQSLDKAQ 400 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 421
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=65.93 E-value=49 Score=37.75 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT 359 (896)
Q Consensus 312 L~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~ 359 (896)
..++...-.+|+........+++++..........+.+.+..+.++..
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~ 53 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKK 53 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555555555555555444443
No 422
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=65.91 E-value=39 Score=32.40 Aligned_cols=46 Identities=28% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 292 ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASM 337 (896)
Q Consensus 292 kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e 337 (896)
..++.++..+...+..++..+..+.+....|+-|+..|.++|....
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455555555555555555555444444444443
No 423
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=65.75 E-value=2.8e+02 Score=32.77 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 323 KHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (896)
Q Consensus 323 EsEleEL~eqLee~e~~~~eLekeik~LE 351 (896)
..+..+++.++.........+...+..+.
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~ 266 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLL 266 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655555555444433
No 424
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=65.69 E-value=2.4e+02 Score=31.94 Aligned_cols=70 Identities=29% Similarity=0.367 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 002652 244 FRSLQRSNTELRKQLESQVLEIDKLRNENRVVV---ERHEKEMKEMKESV---------SISYLHQLKVLRDMLDAKQKE 311 (896)
Q Consensus 244 vr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir---~r~E~El~El~e~l---------~kklE~QLeELq~kLee~eke 311 (896)
|..|+..|.+|.+|++=..++.+-|..-.+.-. +++-.-+.++.+.+ .+-|+.|+.+|+....-++++
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999888877666544443221111 11112233344433 256777777777766666776
Q ss_pred HH
Q 002652 312 LA 313 (896)
Q Consensus 312 L~ 313 (896)
|.
T Consensus 82 LA 83 (351)
T PF07058_consen 82 LA 83 (351)
T ss_pred HH
Confidence 66
No 425
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.57 E-value=23 Score=42.07 Aligned_cols=11 Identities=9% Similarity=-0.215 Sum_probs=5.6
Q ss_pred ccccCCCCcCC
Q 002652 679 QNIDLNKPETL 689 (896)
Q Consensus 679 ~~~~~~~~~~~ 689 (896)
+..+|.-|-.+
T Consensus 257 ~~~dl~gC~v~ 267 (475)
T PRK13729 257 KTYDATGCFVG 267 (475)
T ss_pred cccccCCcEEE
Confidence 44556666433
No 426
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=65.10 E-value=1.5e+02 Score=29.46 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVER 278 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r 278 (896)
.|.+|..|+.......++|.+.+.-.+.|.+++.++...
T Consensus 11 LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~E 49 (134)
T PF15233_consen 11 LINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGE 49 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466677777777777777777777777777777666554
No 427
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.71 E-value=4.4e+02 Score=34.69 Aligned_cols=290 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS-----ISYLHQLKVLRDMLDAKQKELAEIS 316 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~-----kklE~QLeELq~kLee~ekeL~el~ 316 (896)
++.+.+...+..|+.++.............+......+...+..+...+. .....++.++...+......+..+.
T Consensus 187 ~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1042)
T TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLR 266 (1042)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 317 RISAEQKHEMEDLNDRLSASMQSCT-----EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQ 391 (896)
Q Consensus 317 ~k~~kLEsEleEL~eqLee~e~~~~-----eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~ 391 (896)
.....+..++..+......+..... .+......+..++..+...+......+...+.. ...++.....+...+.
T Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 345 (1042)
T TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK-RAAHVKQQSSIEEQRR 345 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q 002652 392 EKLK--------RLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSAS 463 (896)
Q Consensus 392 eerk--------k~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~ 463 (896)
++.. ...........+.-..+.............+......+...+..+..++..+......+...+....+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 425 (1042)
T TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ 425 (1042)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 464 W--KKRVEELENEIKKLREELESEKQA-AREVAWAKVSGLELDILAATRDLDFERRRLKAARERIMLRETQLR 533 (896)
Q Consensus 464 l--qkel~elE~EireLe~ELE~~k~~-~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~rerL~~~eqq~k 533 (896)
+ .........++..+........ . ........+..+...+...+..++.....+...+....+......
T Consensus 426 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~ 497 (1042)
T TIGR00618 426 LAHAKKQQELQQRYAELCAAAITCT-AQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL 497 (1042)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 428
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=64.45 E-value=3.4e+02 Score=33.26 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=15.2
Q ss_pred cccccceEEEEeccCCCCCCCCCCCCceEEEEe
Q 002652 122 AVSANHCKIYRKKFASGDLDHSPSGCSSVCLKD 154 (896)
Q Consensus 122 ~ISr~Hc~I~~~~~~~~~~~~~~~~~~~~~L~D 154 (896)
.-||-|.+|...-. -.+....--.....||.|
T Consensus 205 ~sSRSHsIF~i~Vk-Q~n~e~~~~~~gkLyLVD 236 (607)
T KOG0240|consen 205 HSSRSHSIFLIHVK-QENVEDKRKLSGKLYLVD 236 (607)
T ss_pred cccccceEEEEEEE-eccccchhhccccEEEEE
Confidence 34788887764311 001111011233588988
No 429
>PRK04406 hypothetical protein; Provisional
Probab=64.23 E-value=53 Score=29.55 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 325 EMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 325 EleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
.|.+|..++.=.+..+.+|++.+.++.++|..|.
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444433333
No 430
>PRK00295 hypothetical protein; Provisional
Probab=64.05 E-value=49 Score=29.12 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (896)
Q Consensus 312 L~el~~k~~kLEsEleEL~eqLee~e~~~~eLekei 347 (896)
+.+|+.++.-++.-+++|+..+..-...+..+.+.+
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333333333333
No 431
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=63.83 E-value=3.9e+02 Score=33.68 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002652 247 LQRSNTELRKQLESQVLEIDKL 268 (896)
Q Consensus 247 Le~e~~eL~~qlee~~~~i~~L 268 (896)
|+.....|..+.-.+..+..++
T Consensus 387 l~aq~~al~~era~l~a~w~rv 408 (828)
T PF04094_consen 387 LNAQVQALAAERAALDAEWARV 408 (828)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5666666655555554444333
No 432
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=63.73 E-value=2.2e+02 Score=30.75 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 304 MLDAKQKELAEISRISAEQKH 324 (896)
Q Consensus 304 kLee~ekeL~el~~k~~kLEs 324 (896)
+....++.+...-..+.+++.
T Consensus 39 ~~~~~~~~i~~aP~~~~~l~~ 59 (240)
T PF12795_consen 39 RAAEYQKQIDQAPKEIRELQK 59 (240)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333
No 433
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=63.13 E-value=3e+02 Score=32.14 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 254 LRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRL 333 (896)
Q Consensus 254 L~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqL 333 (896)
+..+|++.......|...+..+++++.+++.=+.+. |+|-+-+.+.++..|.+ ...--+.|+..|+..|
T Consensus 265 ileeL~eIk~~q~~Leesye~Lke~~krdy~fi~et--------LQEERyR~erLEEqLNd---lteLqQnEi~nLKqEl 333 (455)
T KOG3850|consen 265 ILEELREIKETQALLEESYERLKEQIKRDYKFIAET--------LQEERYRYERLEEQLND---LTELQQNEIANLKQEL 333 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHH
Confidence 344444444555555555555555544444333332 45555556666555443 2333445666666666
Q ss_pred HHHHHHHH
Q 002652 334 SASMQSCT 341 (896)
Q Consensus 334 ee~e~~~~ 341 (896)
...+.+++
T Consensus 334 asmeerva 341 (455)
T KOG3850|consen 334 ASMEERVA 341 (455)
T ss_pred HHHHHHHH
Confidence 66655554
No 434
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=62.85 E-value=4.2e+02 Score=33.79 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=5.2
Q ss_pred hhccChhhH
Q 002652 811 IGIVTPELK 819 (896)
Q Consensus 811 ~~~~~~~~~ 819 (896)
+|-|+|||-
T Consensus 1407 ~~Aca~df~ 1415 (1424)
T KOG4572|consen 1407 VEACAMDFE 1415 (1424)
T ss_pred HhhcCcCCC
Confidence 556666653
No 435
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.80 E-value=86 Score=37.40 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=9.5
Q ss_pred cChhhHhhcCCCCccccc
Q 002652 814 VTPELKVQFGGAVDNDLH 831 (896)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~ 831 (896)
++.=|++.++.+.|-.|-
T Consensus 427 ~adW~~krygqsFdAVyV 444 (472)
T TIGR03752 427 VADWVNKRYGQSFDAVYV 444 (472)
T ss_pred HHHHHHHHhhccccEEEe
Confidence 444555555555554443
No 436
>PRK14143 heat shock protein GrpE; Provisional
Probab=62.61 E-value=1.5e+02 Score=32.44 Aligned_cols=68 Identities=12% Similarity=0.215 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKEL 312 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL 312 (896)
..+..|+.++..|+.++..+...+.++..+..+.|.|..+++.++..... +.-+.+|-.=++.+++.+
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~---~~~~~~lLpV~DnLerAl 134 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLK---CNTLSEILPVVDNFERAR 134 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHH
Confidence 56788999999999999999999999999999999998888888776653 333334334444444443
No 437
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=62.60 E-value=5.7 Score=37.56 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 272 NRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (896)
Q Consensus 272 i~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekei 347 (896)
+...+..++.|+.++...+ |.+.+.......++...+..++..|+.++.+....|..+..++..|...+
T Consensus 13 ae~~~~~ie~ElEeLTasL-------FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 13 AEQEKEQIESELEELTASL-------FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666 66666666666666666666666666666666655555555554444433
No 438
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=1.8e+02 Score=29.45 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVV 275 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~i 275 (896)
.+++.|...+.-|..+++.+...+..++.-+..+
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~ 39 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISEL 39 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777766666554333
No 439
>PRK04325 hypothetical protein; Provisional
Probab=62.17 E-value=55 Score=29.27 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 312 LAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIM 347 (896)
Q Consensus 312 L~el~~k~~kLEsEleEL~eqLee~e~~~~eLekei 347 (896)
+.+|+.++.-++.-|++|+..|..-...+..|.+.+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333333333333
No 440
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.14 E-value=51 Score=29.32 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 311 ELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQ 350 (896)
Q Consensus 311 eL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~L 350 (896)
++.+|+.++.-++.-+++|+..+......+..+.+.++.|
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333333
No 441
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=61.95 E-value=1.8e+02 Score=29.09 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 002652 430 KLKLDETRERLVTSDNKVRLL 450 (896)
Q Consensus 430 q~eLE~lra~l~~lEkk~reL 450 (896)
+.+++++.--+..++.++...
T Consensus 83 q~EldDLL~ll~Dle~K~~ky 103 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKY 103 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHH
Confidence 333333333333333333333
No 442
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=61.72 E-value=2.8e+02 Score=31.29 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDE 356 (896)
Q Consensus 304 kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~E 356 (896)
.|+....+-.-++.++..|-++...+..++.++......++.-+.+.-..+.+
T Consensus 260 ~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~e 312 (384)
T KOG0972|consen 260 ALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDE 312 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33333333334566666666666666666666666666555544444333333
No 443
>PRK00846 hypothetical protein; Provisional
Probab=61.50 E-value=71 Score=29.00 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 308 KQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTID 355 (896)
Q Consensus 308 ~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ 355 (896)
++..|.+|+.++.-.+.-+++|+..+......+..+...++.+...+.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445554444444444444444444443333
No 444
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=61.47 E-value=73 Score=27.25 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 303 DMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTE 342 (896)
Q Consensus 303 ~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~e 342 (896)
.+++.+...+..|..++.+|..++..++..+..++.....
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666555544443333
No 445
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=61.18 E-value=1.7e+02 Score=28.70 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002652 514 ERRRLKAARERIMLRETQLRAFY 536 (896)
Q Consensus 514 Ek~rLq~~rerL~~~eqq~ka~i 536 (896)
++.||..+.+.|+..++.++.+|
T Consensus 95 eLERl~~E~~sL~kve~eQ~~~i 117 (120)
T PF14931_consen 95 ELERLRSEYESLQKVEQEQNELI 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 446
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=61.04 E-value=2.7 Score=49.93 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002652 326 MEDLNDRLSASMQSCTEANEIM 347 (896)
Q Consensus 326 leEL~eqLee~e~~~~eLekei 347 (896)
+-++.++|++-+.++.....++
T Consensus 410 l~qyq~RLedSE~RLr~QQ~eK 431 (495)
T PF12004_consen 410 LLQYQARLEDSEERLRRQQEEK 431 (495)
T ss_dssp ----------------------
T ss_pred HHHHHHhhhhhHHHHHHHhhhh
Confidence 3345555555555444444333
No 447
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.99 E-value=2.5e+02 Score=30.62 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 386 SQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQ------SSLQVESLKLKLDETRERLVTSDN 445 (896)
Q Consensus 386 l~~El~eerkk~eee~~~~ieElee~l~KLqE~EKk------lr~elEdLq~eLE~lra~l~~lEk 445 (896)
...+...|++...+.+..+++.++..++.|....++ ....++.+...+++.+--+..|+.
T Consensus 119 ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~ 184 (233)
T PF04065_consen 119 EKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLEL 184 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677766666777777777776666554332 223344444444444444444433
No 448
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=60.88 E-value=2.3e+02 Score=30.14 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 002652 245 RSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV------------SISYLHQLKVLRDMLDAKQKEL 312 (896)
Q Consensus 245 r~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l------------~kklE~QLeELq~kLee~ekeL 312 (896)
+.|..-+..|...-+.....-...+..+..+|..+-.||.....-. -|+.-.+..+++.++..++.+
T Consensus 19 r~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~~~l~~~i~~le~~- 97 (196)
T PF15272_consen 19 RALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQSEDLQSRISNLEKQ- 97 (196)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhH
Q 002652 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMK----SQKVTIDELKTQL 361 (896)
Q Consensus 313 ~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik----~LE~eI~ELe~qL 361 (896)
+..+...-..++..++.+|-.++.+..++..... ..+..|.+|+.+|
T Consensus 98 --lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L 148 (196)
T PF15272_consen 98 --LVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQL 148 (196)
T ss_pred --HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 449
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=60.68 E-value=2e+02 Score=35.10 Aligned_cols=56 Identities=29% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002652 457 EQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDF 513 (896)
Q Consensus 457 ek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~ 513 (896)
.......|-++++++.-+-.-|+.|++..+ ....++.++|..|+.||.+++.++..
T Consensus 320 LNiVKNDLIakVDeL~~E~~vLrgElea~k-qak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 320 LNIVKNDLIAKVDELTCEKDVLRGELEAVK-QAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHhhccHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777666667777777776 66677777777777777655444433
No 450
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.26 E-value=2.9e+02 Score=31.15 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=3.0
Q ss_pred cccccc
Q 002652 629 QEAEFT 634 (896)
Q Consensus 629 ~~~~~~ 634 (896)
|.+.++
T Consensus 263 q~v~i~ 268 (346)
T PRK10476 263 DCATVY 268 (346)
T ss_pred CEEEEE
Confidence 445554
No 451
>PRK14151 heat shock protein GrpE; Provisional
Probab=60.17 E-value=1.7e+02 Score=30.57 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESV 290 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l 290 (896)
..+..|+.++..|+.++.++...+.++..+..+.+.|.++++.++...-
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a 68 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFA 68 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888889989888888888999999999999888888877665
No 452
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=59.28 E-value=3.4e+02 Score=31.60 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002652 292 ISYLHQLKVLRDMLDAKQKELAE 314 (896)
Q Consensus 292 kklE~QLeELq~kLee~ekeL~e 314 (896)
..+..++..++.++..++.++..
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~ 114 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEE 114 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444433
No 453
>PRK14139 heat shock protein GrpE; Provisional
Probab=59.17 E-value=2.1e+02 Score=30.15 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS 291 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~ 291 (896)
..+..|..++..|+.++.++.....++..+..+.+.|.++++.++...-.
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~ 81 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAI 81 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778888999999999999999999999999999998888888876663
No 454
>PRK00736 hypothetical protein; Provisional
Probab=58.88 E-value=62 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 329 LNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 329 L~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
|..++.-.+..+.+|++.+.++.++|..|.
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333433433333333333
No 455
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=58.75 E-value=64 Score=38.95 Aligned_cols=8 Identities=13% Similarity=0.036 Sum_probs=3.8
Q ss_pred CCCCCCCC
Q 002652 643 GFGSDIDG 650 (896)
Q Consensus 643 ~~~~~~~~ 650 (896)
.|++++|=
T Consensus 308 q~RpgfDl 315 (907)
T KOG2264|consen 308 QIRPGFDL 315 (907)
T ss_pred eeccCCCc
Confidence 45555543
No 456
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=58.50 E-value=3.2e+02 Score=34.51 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHhhhhhhhhhhcccccccccCCCCC
Q 002652 550 QEQLKAMQKTLEDEENYENTSVDIDLCVPDG 580 (896)
Q Consensus 550 ~~qL~~lq~~LEdEek~~s~~leld~~p~~k 580 (896)
...|+.++..|+-+..++..-++--+...+|
T Consensus 639 ~e~l~~~~~~i~~~p~p~~~~~~~~~~e~d~ 669 (809)
T KOG0247|consen 639 DEKLKHLTAIIQTPPPPYQTPGRNPLFEKDR 669 (809)
T ss_pred HHHHHHhhcccCCCCCCcCCcccccccccch
Confidence 4556777777777666777666544444444
No 457
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=58.20 E-value=2.2e+02 Score=29.11 Aligned_cols=91 Identities=8% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE-LEe~~~eLk~qIqkl~~El~ee 393 (896)
+..+..++.+.+.+......+++....+....+...+.+..++......+.+...++ ++....+..+.+.++...+..+
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~E 130 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFE 130 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 002652 394 LKRLSDAASRRE 405 (896)
Q Consensus 394 rkk~eee~~~~i 405 (896)
+.+...+..+.+
T Consensus 131 k~~a~~elk~ei 142 (167)
T PRK08475 131 VRKMEREVVEEV 142 (167)
T ss_pred HHHHHHHHHHHH
No 458
>PF15456 Uds1: Up-regulated During Septation
Probab=58.00 E-value=2e+02 Score=28.41 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 281 KEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQ-----------KHEMEDLNDRLSASMQSCTEANEIMKS 349 (896)
Q Consensus 281 ~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kL-----------EsEleEL~eqLee~e~~~~eLekeik~ 349 (896)
.+..++.+++ +.+...+.-++.++. ++..+.++...+.++ ...+..-.+.+......+.++..++-.
T Consensus 22 eEVe~LKkEl-~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 22 EEVEELKKEL-RSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHH
Q 002652 350 QKVTIDELKTQLDE 363 (896)
Q Consensus 350 LE~eI~ELe~qLEe 363 (896)
++..+.++...|-+
T Consensus 100 le~R~~~~~~rLLe 113 (124)
T PF15456_consen 100 LENRLAEVRQRLLE 113 (124)
T ss_pred HHHHHHHHHHHHHH
No 459
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=57.98 E-value=64 Score=31.18 Aligned_cols=55 Identities=27% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 283 MKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQ 338 (896)
Q Consensus 283 l~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~ 338 (896)
..++-..+ ..++.++..+...+..++..+.++.+....|+-|...|+++|..++.
T Consensus 3 k~elfd~l-~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 3 KKEIFDAL-DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 460
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.97 E-value=58 Score=31.27 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 313 AEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 313 ~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
.++-.++..++..+..+..+|.+++..+.++.++..+|..+...|...|.+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=57.57 E-value=2.3e+02 Score=29.03 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE-LEe~~~eLk~qIqkl~~El~ee 393 (896)
+..+...+...+.+......+++....+....+...+.+..++-.....+.....++ ++....+...-+..++.++..+
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e 127 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAE 127 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 394 LKRLSDAASRRELEQ 408 (896)
Q Consensus 394 rkk~eee~~~~ieEl 408 (896)
+.+...+....+-.+
T Consensus 128 ~~~a~~~l~~qi~~l 142 (174)
T PRK07352 128 QERVIAQLRREAAEL 142 (174)
T ss_pred HHHHHHHHHHHHHHH
No 462
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=57.49 E-value=1.7e+02 Score=27.39 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 279 HEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 279 ~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+..||..+.... +.+..++......+..++..+..+...+.+...++-.+...+..+...+..|+..+.+-..-+..|+
T Consensus 1 L~~EL~~~~~a~-~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 1 LQTELVSMEQAF-KELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred CchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHH
Q 002652 359 TQLDEERNLRRVDRENA 375 (896)
Q Consensus 359 ~qLEeEr~~~~EELEe~ 375 (896)
. ++.+...++..+++.
T Consensus 80 ~-~E~~~~~~l~~~Eke 95 (96)
T PF08647_consen 80 E-TEKEFVRKLKNLEKE 95 (96)
T ss_pred H-HHHHHHHHHHHhhcc
No 463
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.27 E-value=2.9e+02 Score=30.05 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE-LEe~~~eLk~qIqkl~~El~ee 393 (896)
+..+...+...+.+......+++....+.+..+...+.+...+......+-....++ +.+...+..+.+..++.++..+
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E 113 (246)
T TIGR03321 34 MDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRRE 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 394 LKRLSDAASRRELEQ 408 (896)
Q Consensus 394 rkk~eee~~~~ieEl 408 (896)
+.+...+....+..+
T Consensus 114 ~~~a~~~l~~ei~~l 128 (246)
T TIGR03321 114 QAALSDELRRRTGAE 128 (246)
T ss_pred HHHHHHHHHHHHHHH
No 464
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=57.10 E-value=1.4e+02 Score=30.59 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 002652 279 HEKEMKEMKESVSISYLHQL-----KVLRDMLDAKQKELAE-ISRISAEQKHEMED----LNDRLSASMQSCTEANEIMK 348 (896)
Q Consensus 279 ~E~El~El~e~l~kklE~QL-----eELq~kLee~ekeL~e-l~~k~~kLEsEleE----L~eqLee~e~~~~eLekeik 348 (896)
++.-..++...+...+...+ +++..-+.+-...+.. +..-...|+.++.+ +...+..+...+.+....+.
T Consensus 1 ~~~~~~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~ 80 (155)
T PF07464_consen 1 IQQHAQEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLR 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 349 ----SQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINK 414 (896)
Q Consensus 349 ----~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~K 414 (896)
.+++...+|...|......+..+.++..+++...+..++..++..++.+++......+++...+..
T Consensus 81 k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~~ 150 (155)
T PF07464_consen 81 KANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLHE 150 (155)
T ss_dssp G-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=57.03 E-value=88 Score=33.96 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHH
Q 002652 448 RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDIL-AATRDLDFERRRLKAARERIM 526 (896)
Q Consensus 448 reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eie-ka~reLE~Ek~rLq~~rerL~ 526 (896)
++|.++|-+.+... .+--.-.+.+++-+.+.++.++ ++.+.-+|.-.+. ++...|..++.+|++....|+
T Consensus 164 ~eLqkr~~~v~~l~---~q~~k~~~~qv~~in~qlErLR------L~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~ 234 (289)
T COG4985 164 RELQKRLLEVETLR---DQVDKMVEQQVRVINSQLERLR------LEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQ 234 (289)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhH
Q 002652 527 LRETQLRAFYSTT 539 (896)
Q Consensus 527 ~~eqq~ka~iek~ 539 (896)
.....++++++++
T Consensus 235 ~~L~~L~~e~~r~ 247 (289)
T COG4985 235 TELDALRAELERQ 247 (289)
T ss_pred HHHHHHhhhhhhc
No 466
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=56.72 E-value=1.9e+02 Score=27.75 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002652 293 SYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (896)
Q Consensus 293 klE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLE 362 (896)
++-.++..|+++...+.+..-+-..+...|..++......|..++..+.-|.-....|.+.+..|+..|+
T Consensus 2 kla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.53 E-value=1.4e+02 Score=36.60 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 262 VLEIDKLRNENRVVVERHEKEMKEM--KESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQS 339 (896)
Q Consensus 262 ~~~i~~Lr~ei~~ir~r~E~El~El--~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~ 339 (896)
+...++++..++..+.+..+.++++ ...+ ..|+.++++++.. .=+...++...+.++..-..+.+......+..
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~-~~yk~~v~~i~~~---~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDL-EEYKKRLEAIKKK---DIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002652 340 CTEANEIMKSQKVTIDELKTQLDEERNLRRV 370 (896)
Q Consensus 340 ~~eLekeik~LE~eI~ELe~qLEeEr~~~~E 370 (896)
..+++..++.+++++.+++..-.++-+.+..
T Consensus 239 ~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 239 KNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
No 468
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.26 E-value=2.5e+02 Score=29.01 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 255 RKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQ-KELAEISRISAEQKHEMEDLNDRL 333 (896)
Q Consensus 255 ~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~e-keL~el~~k~~kLEsEleEL~eqL 333 (896)
..|-+..+..+..+=...-......-.-..++.... -.+...+.+++..+...+ .....+.....+|+.+++.|+.+|
T Consensus 18 ~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~-~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 18 EEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQE-YLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 334 SASMQSCT-EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKL 394 (896)
Q Consensus 334 ee~e~~~~-eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eer 394 (896)
...-..+. ++.-.+.--+..+.+....++.........+...+..|+.+|..+..++-.|.
T Consensus 97 ~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 97 REEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.91 E-value=1.7e+02 Score=27.17 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 245 RSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKH 324 (896)
Q Consensus 245 r~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEs 324 (896)
+..+.....+-.+|-.+... +|+.....+......+++.++.+|+.++..+.+++..|..++.....
T Consensus 11 ~ev~~~ve~vA~eLh~~Yss-------------KHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 11 KEVEKAVEKVARELHALYSS-------------KHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002652 325 EMEDLNDRLS 334 (896)
Q Consensus 325 EleEL~eqLe 334 (896)
+-..|-..|.
T Consensus 78 Ek~~Ll~ll~ 87 (87)
T PF12709_consen 78 EKQELLKLLE 87 (87)
T ss_pred HHHHHHHhhC
No 470
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.88 E-value=80 Score=30.08 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002652 302 RDMLDAKQKELAEISRISAEQKHEMEDL--NDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (896)
Q Consensus 302 q~kLee~ekeL~el~~k~~kLEsEleEL--~eqLee~e~~~~eLekeik~LE~eI~ELe~qLE 362 (896)
+..++.....+.....++..++.++..| ...+..+.-.+++++..++.+..+++-+.++++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 471
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=55.75 E-value=2.8e+02 Score=29.52 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS--ISYLHQLKVLRDMLDAKQKELAEISR 317 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~--kklE~QLeELq~kLee~ekeL~el~~ 317 (896)
.|++|-.-.+.+..|...+....+...... .+.+.+|...+.++-.++. +++-..+=.|-.|...+++-......
T Consensus 10 lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e---~~~~~KY~~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~~~ 86 (196)
T PF15272_consen 10 LLDQLDQNNRALSDLNQDLRERDERYELQE---TSYKEKYQQLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQSED 86 (196)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAV 383 (896)
Q Consensus 318 k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qI 383 (896)
-...+-.-...+-.++......+..+...+-.++....+++ ..+..-.-.-+.++.+|..++
T Consensus 87 l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~----~~r~~e~~~YesRI~dLE~~L 148 (196)
T PF15272_consen 87 LQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ----NERERERIAYESRIADLERQL 148 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
No 472
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=55.64 E-value=4.1e+02 Score=31.39 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHH
Q 002652 289 SVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK-VTIDELKTQLDEERNL 367 (896)
Q Consensus 289 ~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE-~eI~ELe~qLEeEr~~ 367 (896)
++...+-..+ --..-....+...........-+..++.++...+...+...........-.. ..-.-+..+.-.+...
T Consensus 168 ~~aa~v~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~~~~~~~~ln~ 246 (458)
T COG3206 168 KLAAKLANAL-AQAYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNT 246 (458)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002652 368 RRVDRENAEADLKAAVQKSQLETQEKL---KRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSD 444 (896)
Q Consensus 368 ~~EELEe~~~eLk~qIqkl~~El~eer---kk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lE 444 (896)
.............+.+..+......-. ..-+......+..+......+......+..++....-.+..+++.+.+++
T Consensus 247 ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~ 326 (458)
T COG3206 247 QLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELR 326 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002652 445 NKV-RLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFERRRLKAARE 523 (896)
Q Consensus 445 kk~-reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~re 523 (896)
..+ .++.+.+........-+++....+..++..++.++..+- ........|+.+.+.++.-|+.-..+++....
T Consensus 327 ~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~-----~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~ 401 (458)
T COG3206 327 QQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLP-----KLQVQLRELEREAEAARSLYETLLQRYQELSI 401 (458)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhch-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 002652 524 RI 525 (896)
Q Consensus 524 rL 525 (896)
+.
T Consensus 402 ~~ 403 (458)
T COG3206 402 QE 403 (458)
T ss_pred hh
No 473
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=55.61 E-value=2.5e+02 Score=28.80 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE-LEe~~~eLk~qIqkl~~El~ee 393 (896)
+..+...+...+.+......++.....+.++.+...+.+..++......+-....++ +.....+..+-+...+.++..+
T Consensus 45 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e 124 (173)
T PRK13460 45 LDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELA 124 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002652 394 LKRLSDAASRRELEQQEVINK 414 (896)
Q Consensus 394 rkk~eee~~~~ieElee~l~K 414 (896)
+.+...+....+..+--.+..
T Consensus 125 ~~~a~~el~~ei~~lA~~~a~ 145 (173)
T PRK13460 125 KGKALSQLQNQIVEMTITIAS 145 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 474
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=55.61 E-value=2.7e+02 Score=29.24 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHH
Q 002652 302 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA---EAD 378 (896)
Q Consensus 302 q~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~---~~e 378 (896)
+..+...-..+..++.++..++..+.++-..|.+-..+.-.+.+.+..+++.|..|. .--+..+.-+|.+ ..+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~----~K~D~~L~llE~~~~~~~~ 146 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLD----KKLDKILELLEGQQKTQDE 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHH----HHHHHHHHHHhcCccchhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 379 LKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQ 421 (896)
Q Consensus 379 Lk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~EKk 421 (896)
|+..|+ .+.+..-+.-..+.++..+....|+++..++
T Consensus 147 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (189)
T TIGR02132 147 LKETIQ------KQIKTQGEQLQAQLLEKQEALAAKLKAEAKE 183 (189)
T ss_pred HHHHHH------HHHhhhHHHHHHHHHHHHHHHHHHhhhHHHh
No 475
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=55.20 E-value=3.3e+02 Score=30.21 Aligned_cols=135 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 284 KEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 284 ~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
+++..++......+..+...++.. .+..++......+..+..++..++..+..+...+..
T Consensus 108 ~eI~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 167 (301)
T PF14362_consen 108 KEIDQKLDEIRQEKQDAIQAQVQA--------------------SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQC 167 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 364 ERNLR-----------RVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLK 432 (896)
Q Consensus 364 Er~~~-----------~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~e 432 (896)
|.... .....+.....+.+++.++.++.................+.....+..............+-.+
T Consensus 168 E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R 247 (301)
T PF14362_consen 168 EIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGFLAR 247 (301)
T ss_pred hhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCHHHH
Q ss_pred HHHHHH
Q 002652 433 LDETRE 438 (896)
Q Consensus 433 LE~lra 438 (896)
+..+..
T Consensus 248 ~~Al~~ 253 (301)
T PF14362_consen 248 LEALWE 253 (301)
T ss_pred HHHHHH
No 476
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=55.18 E-value=2.5e+02 Score=28.76 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE-LEe~~~eLk~qIqkl~~El~ee 393 (896)
+..+...+...+.+......++.....+.+..+...+.+..++-.....+-....++ +.....+..+.+..++.++..+
T Consensus 47 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e 126 (175)
T PRK14472 47 LEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE 126 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 394 LKRLSDAASRRELEQ 408 (896)
Q Consensus 394 rkk~eee~~~~ieEl 408 (896)
+.+...+....+.++
T Consensus 127 ~~~a~~~l~~~i~~l 141 (175)
T PRK14472 127 KRRALDVLRNEVADL 141 (175)
T ss_pred HHHHHHHHHHHHHHH
No 477
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.07 E-value=1.9e+02 Score=33.24 Aligned_cols=84 Identities=26% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 241 LDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISA 320 (896)
Q Consensus 241 ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~ 320 (896)
++.+.+|...+..|..+-+.+..++..+..+++..... ..+++..+-+++-.-|.+-++||..+++.|..+.....
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~----K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNA----KEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Q ss_pred HHHHHHHH
Q 002652 321 EQKHEMED 328 (896)
Q Consensus 321 kLEsEleE 328 (896)
....+.++
T Consensus 212 ~~~~~~~~ 219 (342)
T PF06632_consen 212 SPKQERED 219 (342)
T ss_dssp HHH-----
T ss_pred chhhhhcc
No 478
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.69 E-value=3.1e+02 Score=33.67 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002652 285 EMKESVSISYLHQLKVLRDMLDAK--QKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLD 362 (896)
Q Consensus 285 El~e~l~kklE~QLeELq~kLee~--ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLE 362 (896)
.+-+++.+.++..-+.+..++.++ ...+..+..++.+++..-=.-=..+......+.++.++++.....+..++.+|.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 363 EERNLRRVDRENAEADLKAAVQKSQLE---------------TQEKLKRLSDAASRRELEQQEVINKLQIAEKQSSLQ 425 (896)
Q Consensus 363 eEr~~~~EELEe~~~eLk~qIqkl~~E---------------l~eerkk~eee~~~~ieElee~l~KLqE~EKklr~e 425 (896)
.+++.....+.+-...-+..+.+|..- +.+.+.++.+-...-.+-.+-++.+.+...++-+.+
T Consensus 244 ~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~~~~~~~~L~g~~i~~~~~~~~~~y~~~~p~i~~~~~~~~~e~~~ 321 (555)
T TIGR03545 244 NDKKQLKADLAELKKAPQNDLKRLENKYAIKSGDLKNFAVDLFGPEIRKYLQKFLKYYDQAEPLLNKSKKEPKEEAVE 321 (555)
T ss_pred HhHHHHHHHHHHHHhccHhHHHHHHHHhCCCcccHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhhccchhccchhhhc
No 479
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.67 E-value=4.3e+02 Score=31.33 Aligned_cols=177 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002652 302 RDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKA 381 (896)
Q Consensus 302 q~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~ 381 (896)
+.+..+.-+++..-.+.+..++..+.+|+.+|+.+........-++..|+..+.+..+--+-....-.+...+.++.|+.
T Consensus 237 nk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~ 316 (575)
T KOG4403|consen 237 NKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRV 316 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHH
Q 002652 382 AVQKSQLETQE--------KLKRLSDAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTS----DNKVRL 449 (896)
Q Consensus 382 qIqkl~~El~e--------erkk~eee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~l----Ekk~re 449 (896)
+|.++..+++. .+.+... ..-+-+.+-+..|-+..++++..-.+.+.+=......-+..+ ..-+.+
T Consensus 317 ~L~kAEkele~nS~wsaP~aLQ~wLq--~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDd 394 (575)
T KOG4403|consen 317 ALEKAEKELEANSSWSAPLALQKWLQ--LTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDD 394 (575)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhh
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002652 450 LETQVCKEQNVSASWKKRVEELENEIKKLRE 480 (896)
Q Consensus 450 Ldk~LeEek~~~~~lqkel~elE~EireLe~ 480 (896)
.+.+|-+.+.....+...+++...+-++++.
T Consensus 395 VD~kIleak~al~evtt~lrErl~RWqQIE~ 425 (575)
T KOG4403|consen 395 VDHKILEAKSALSEVTTLLRERLHRWQQIES 425 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.59 E-value=1.3e+02 Score=34.37 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002652 300 VLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADL 379 (896)
Q Consensus 300 ELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eL 379 (896)
|+....++++++-.++++.-......++++..........+..-.+.++.+...+..++..+..+.....+++++.+.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 002652 380 KAAVQKSQL 388 (896)
Q Consensus 380 k~qIqkl~~ 388 (896)
+..+..++.
T Consensus 81 ~~~l~DmEa 89 (330)
T PF07851_consen 81 RCQLFDMEA 89 (330)
T ss_pred HhhHHHHHh
No 481
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=54.50 E-value=2.3e+02 Score=29.21 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 251 NTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVS--ISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMED 328 (896)
Q Consensus 251 ~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~--kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleE 328 (896)
|+.++++.+.....-+..+.+.......+- +.++-.-+. +....+...+......++.++..+..++..|+.++..
T Consensus 52 Ns~VRkqY~~~i~~AKkqRk~~~~~~~~lt--l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 52 NAYVRKQYEEAIELAKKQRKELKREAGSLT--LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcccCC--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 329 LNDRLSASMQSCTEANEIMKSQKVTI 354 (896)
Q Consensus 329 L~eqLee~e~~~~eLekeik~LE~eI 354 (896)
|..++...+.....|-..+.+..+.+
T Consensus 130 L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 130 LRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.40 E-value=2.9e+02 Score=29.42 Aligned_cols=108 Identities=17% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------
Q 002652 450 LETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQA--AREVAWAKVSGLELDILAATRDLDFERRRLKAA------ 521 (896)
Q Consensus 450 Ldk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~--~~Ee~~~ki~~LE~Eieka~reLE~Ek~rLq~~------ 521 (896)
|...+.....+...+..+|..+..++.+++..|.+.+ . ....++.+- ..+=+-++.|+..+..|..+
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R-~gpaq~~~KqrA----lrVLkQKK~yE~q~d~L~~QsfNMeQ 91 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTR-PGPAQNALKQRA----LRVLKQKKMYENQKDSLDQQSFNMEQ 91 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC-CCcchhHHHHHH----HHHHHHHHHHHHHHHHHHHhcccHHH
Q ss_pred ----HHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHhhhhhh
Q 002652 522 ----RERIMLRETQLRAFYSTTEEISVLFARQ-QEQLKAMQKTLED 562 (896)
Q Consensus 522 ----rerL~~~eqq~ka~iek~EEiee~fkk~-~~qL~~lq~~LEd 562 (896)
.+.|+.......|+-....+.....++. ..+|.+||..+.|
T Consensus 92 a~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~D 137 (218)
T KOG1655|consen 92 ANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMED 137 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
No 483
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=54.18 E-value=5e+02 Score=31.89 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 245 RSLQRSNTELRKQLESQVLEIDKLRNEN-----RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRIS 319 (896)
Q Consensus 245 r~Le~e~~eL~~qlee~~~~i~~Lr~ei-----~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~ 319 (896)
|.|+.++.++-+-+.+-++.-+.+=..+ -+.++++|+-|+.--+++ .+|..|++..+..-+.+.+
T Consensus 4 RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKL-QRlRdQIKtW~ss~dIKDK--------- 73 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKL-QRLRDQIKTWQSSSDIKDK--------- 73 (575)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccH---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 320 AEQKHEMEDLNDRLSASMQSCTEANEIMK-----SQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKL 394 (896)
Q Consensus 320 ~kLEsEleEL~eqLee~e~~~~eLekeik-----~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eer 394 (896)
..|-+.++.|+..-.+....+++.+ +.-.-+.+.-.--+.++.....-+.+.+.+|.+++...+.
T Consensus 74 ----~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea------ 143 (575)
T KOG2150|consen 74 ----DSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEA------ 143 (575)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 395 KRLSDAASRRELEQQEVINKLQIAEKQSSLQ 425 (896)
Q Consensus 395 kk~eee~~~~ieElee~l~KLqE~EKklr~e 425 (896)
+.+...++.-+-.+.+|+-..+.+...
T Consensus 144 ----~~~e~~~erh~~H~~~lEliLr~L~N~ 170 (575)
T KOG2150|consen 144 ----EELERFIERHRWHQQKLELILRLLDND 170 (575)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhcc
No 484
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=54.08 E-value=1.5e+02 Score=30.36 Aligned_cols=91 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002652 296 HQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENA 375 (896)
Q Consensus 296 ~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~ 375 (896)
.+|..+..++...+..+........-..+.+.+....|+.++..+..+.....-+.+.+.=|..++..+.+...+++++.
T Consensus 44 e~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eq 123 (157)
T COG3352 44 EVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQ 123 (157)
T ss_pred HHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 002652 376 EADLKAAVQKS 386 (896)
Q Consensus 376 ~~eLk~qIqkl 386 (896)
+.+|+.-++.+
T Consensus 124 V~el~~i~emv 134 (157)
T COG3352 124 VNELKMIVEMV 134 (157)
T ss_pred HHHHHHHHHHH
No 485
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.60 E-value=1.8e+02 Score=26.66 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHHHH
Q 002652 320 AEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKT---------------------QLDEERNLRRVDRENAEAD 378 (896)
Q Consensus 320 ~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~---------------------qLEeEr~~~~EELEe~~~e 378 (896)
.++..++..++.++..+...+..+...+..++..+.+|.. .+........+.++..+..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002652 379 LKAAVQKSQLETQEKLKRLS 398 (896)
Q Consensus 379 Lk~qIqkl~~El~eerkk~e 398 (896)
|+..+..+..++.++...+.
T Consensus 81 l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 486
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=53.58 E-value=4.2e+02 Score=30.87 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---
Q 002652 299 KVLRDMLDAKQKELAEISRISAEQKHEME-DLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDREN--- 374 (896)
Q Consensus 299 eELq~kLee~ekeL~el~~k~~kLEsEle-EL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe--- 374 (896)
..+..++...+..+..+..++..++.... ....+..........+...+..++.++..++++++.-+.........
T Consensus 92 ~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 171 (421)
T TIGR03794 92 PELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKR 171 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHH
Q 002652 375 -AEADLKAAVQKSQLETQEKLKRLS-DAASRRELEQQEVINKLQIAEKQSS----LQVESLKLKLDETRERLVTSDNKV 447 (896)
Q Consensus 375 -~~~eLk~qIqkl~~El~eerkk~e-ee~~~~ieElee~l~KLqE~EKklr----~elEdLq~eLE~lra~l~~lEkk~ 447 (896)
.+...+..+.++.....+...... .........+...+..+.+....+. .++..++.++..+++.+..++..+
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 172 DRILQQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHhhhcccHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.39 E-value=1.1e+02 Score=35.07 Aligned_cols=78 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 281 KEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELK 358 (896)
Q Consensus 281 ~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe 358 (896)
+.++..+++++++.+..+..+++..+.+.+.-+++..-..+|+.+++.|..++..+..++.=|..-+......++.++
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~ 287 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLE 287 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCc
No 488
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=53.30 E-value=74 Score=30.78 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002652 314 EISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDE 363 (896)
Q Consensus 314 el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEe 363 (896)
++-.++..++..+..+..+|..++..+.++.++...|+.+...|.+.|.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.17 E-value=45 Score=28.38 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 318 ISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDEL 357 (896)
Q Consensus 318 k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~EL 357 (896)
++.++++++..+...+..++..+.++.+.+..++..+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=52.96 E-value=2.8e+02 Score=28.65 Aligned_cols=94 Identities=9% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002652 315 ISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVD-RENAEADLKAAVQKSQLETQEK 393 (896)
Q Consensus 315 l~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EE-LEe~~~eLk~qIqkl~~El~ee 393 (896)
+..+...+...+.+......++.....+.+..+...+.+..++-.+...+-....++ +.....+..+-+.+++.++..+
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~e 135 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASA 135 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002652 394 LKRLSDAASRRELEQ 408 (896)
Q Consensus 394 rkk~eee~~~~ieEl 408 (896)
+.+...+....+.++
T Consensus 136 k~~a~~~l~~~i~~l 150 (184)
T PRK13455 136 EAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHH
No 491
>PRK14147 heat shock protein GrpE; Provisional
Probab=52.82 E-value=2.5e+02 Score=29.21 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 242 DDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAE 321 (896)
Q Consensus 242 dkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~k 321 (896)
.....|..++..|+.++.++...+.++..+..+.+.|..+++.++...- .+.-+.+|-.=++.+++.+.........
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a---~~~~~~~lLpv~DnlerAl~~~~~~~~~ 94 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFA---NEKLLGELLPVFDSLDAGLTAAGTEPSP 94 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhHHHHHHhcccchHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002652 322 QKHEMEDLNDRLSASMQS 339 (896)
Q Consensus 322 LEsEleEL~eqLee~e~~ 339 (896)
+..=++-...+|...-..
T Consensus 95 l~~Gv~mi~k~l~~~L~~ 112 (172)
T PRK14147 95 LRDGLELTYKQLLKVAAD 112 (172)
T ss_pred HHHHHHHHHHHHHHHHHH
No 492
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.69 E-value=1.2e+02 Score=28.80 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002652 296 HQLKVLRDMLDAKQKELAEISRISAEQ--KHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQ 360 (896)
Q Consensus 296 ~QLeELq~kLee~ekeL~el~~k~~kL--EsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~q 360 (896)
..+..+..++....+++..++.++..| ..++..|.-.|.+++..+..+...++.+.....=|..+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=52.57 E-value=53 Score=40.54 Aligned_cols=258 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 240 SLDDFRSLQRSNTELRKQLESQVLEIDKLRNENRVVVERHEKEMK-EMKESVSISYLHQLKVLRDMLDAKQKELAEISRI 318 (896)
Q Consensus 240 ~ldkvr~Le~e~~eL~~qlee~~~~i~~Lr~ei~~ir~r~E~El~-El~e~l~kklE~QLeELq~kLee~ekeL~el~~k 318 (896)
++.++..|...+..|+.+.......+..+...|..+-..+..... ...+.....+. +...........+..|...
T Consensus 140 S~~~l~~l~~~l~~L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~----~~~~~~~Ls~~~l~~L~~~ 215 (619)
T PF03999_consen 140 SLEELEELRQHLQRLQEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYS----EDEESFCLSDENLEKLQEL 215 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccc----cccccCCCCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 319 SAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLS 398 (896)
Q Consensus 319 ~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~e 398 (896)
+.+|+.+......++..+...+..|...+..-+..+..|- ..-..+-... +..++.++.+|+.-..+.++.+.
T Consensus 216 ~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~----~~~~~ls~~~---i~~l~~El~RL~~lK~~~lk~~I 288 (619)
T PF03999_consen 216 LQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFL----EENSGLSLDT---IEALEEELERLEELKKQNLKEFI 288 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh----hccCcchHHH---HHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----
Q 002652 399 DAASRRELEQQEVINKLQIAEKQSSLQVESLKLKLDETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENE---- 474 (896)
Q Consensus 399 ee~~~~ieElee~l~KLqE~EKklr~elEdLq~eLE~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~E---- 474 (896)
......++++=...---.+....+..-+.+... ..-|..+|.++..|.......+..+..+++-..-....
T Consensus 289 ~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~-----E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le 363 (619)
T PF03999_consen 289 EKKRQEIEELWDKCHYSEEERQAFTPFYIDSYT-----EELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELE 363 (619)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002652 475 --------IKKLREELESEKQAAREVAWAKVSGLELDILAATRDLDFE 514 (896)
Q Consensus 475 --------ireLe~ELE~~k~~~~Ee~~~ki~~LE~Eieka~reLE~E 514 (896)
+..-...|.+.. +.+..+..++=.|+.+|.+....|+.+
T Consensus 364 ~~~~D~~Rl~~RGg~LLkEE-k~rk~i~k~lPkle~~L~~~l~~wE~e 410 (619)
T PF03999_consen 364 ESSKDPSRLNNRGGHLLKEE-KERKRIQKKLPKLEEELKKKLEEWEEE 410 (619)
T ss_dssp HHHH-CCGG------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChhhhcccccHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHH
No 494
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.49 E-value=47 Score=28.28 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 304 MLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEA 343 (896)
Q Consensus 304 kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eL 343 (896)
|+++++.++..+...+.-++++++++...++.++..+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK12705 hypothetical protein; Provisional
Probab=52.45 E-value=5.1e+02 Score=31.53 Aligned_cols=137 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 272 NRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQK 351 (896)
Q Consensus 272 i~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE 351 (896)
+...+...+...+++.-..+......-.++...+.....++.....++.+.+..+..-...|...+..+......+...+
T Consensus 39 ~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~ 118 (508)
T PRK12705 39 LQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 352 VTIDELKTQLDEERNLRRVD-----RENAEADLKAAVQK-SQLETQEKLKRLSDAASRRELEQQEVI 412 (896)
Q Consensus 352 ~eI~ELe~qLEeEr~~~~EE-----LEe~~~eLk~qIqk-l~~El~eerkk~eee~~~~ieElee~l 412 (896)
..+.++ ..+....++. .++....|-..+.. ++.+.....++++.++...-+..-..+
T Consensus 119 ~~~~~~----~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~e~~~~~~a~~~A~~i 181 (508)
T PRK12705 119 LELEEL----EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNI 181 (508)
T ss_pred HHHHHH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=52.37 E-value=1.8e+02 Score=31.67 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 252 TELRKQLESQVLEIDKLRNEN------RVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHE 325 (896)
Q Consensus 252 ~eL~~qlee~~~~i~~Lr~ei------~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsE 325 (896)
.+-+.+|..+.-+-+..|+++ -..|.+....+.++...+ +-+..+-+-|+.+.+.++..-..|..+..++..+
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i-~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEI-KDLTEENEILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 002652 326 MEDLNDRLSASMQSCT 341 (896)
Q Consensus 326 leEL~eqLee~e~~~~ 341 (896)
++.++..|..++..+.
T Consensus 134 le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 134 LELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHhhHHHHH
No 497
>COG5283 Phage-related tail protein [Function unknown]
Probab=52.29 E-value=7.2e+02 Score=33.21 Aligned_cols=273 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 262 VLEIDKLRNENRVVVERHEKEMKEMKESVSISYLHQLKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCT 341 (896)
Q Consensus 262 ~~~i~~Lr~ei~~ir~r~E~El~El~e~l~kklE~QLeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~ 341 (896)
...+..|...|+....- -+-+++.+ +..-.-+.+-..+++.+...+.-...-...++.++.++++.+.+.+....
T Consensus 21 ~~~in~L~ssi~~~~~~----~k~~e~q~-k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~ 95 (1213)
T COG5283 21 VKNINVLKSSIKDSTQF----WKMLEKQQ-KLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQ 95 (1213)
T ss_pred HHHHHHHHHHHHhHHHH----HHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 342 EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKLQIAEKQ 421 (896)
Q Consensus 342 eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KLqE~EKk 421 (896)
++..+....+.-+..+..++.--..++.-.. +.+..++.+|..++. -...+...++....++.+...+
T Consensus 96 e~~~q~tqae~~~~sas~q~~~a~~q~~~~~-~~iq~~~~~is~t~k-----------~maaQ~~l~eqt~n~~g~a~~~ 163 (1213)
T COG5283 96 EYNAQYTQAENKLRSLSGQFGVASEQLMLQQ-KEIQRLQYAISTLNK-----------SMAAQARLLEQTGNKFGTADAK 163 (1213)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHH-HHHHHHHHHHHhhhh-----------hhHHHHHHHHHhhhHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002652 422 SSLQVESLKLKLDETRERLVTS-----------DNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQA-- 488 (896)
Q Consensus 422 lr~elEdLq~eLE~lra~l~~l-----------Ekk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~-- 488 (896)
.....+......+.++.++... .+.+..|.+++.-.. ..|+......-....++...++--. .
T Consensus 164 ~~gl~esf~~q~~aln~q~~~t~k~~~~~~~~l~e~qq~~~q~~~a~~---~~L~~s~~q~~~s~~qlsk~~e~~~-~~a 239 (1213)
T COG5283 164 VVGLRESFGRQTEALNKQLERTKKVADALTYVLDEAQQKLSQALSARL---ERLQESRTQMSQSSGQLGKRLETDK-AGA 239 (1213)
T ss_pred hhhHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhccccccch-hhh
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 002652 489 -AREVAWAKVSGLELDILAATRDLDFER-------RRLKAARERIMLRETQLRAFYSTTEEISVLFARQQEQLKA 555 (896)
Q Consensus 489 -~~Ee~~~ki~~LE~Eieka~reLE~Ek-------~rLq~~rerL~~~eqq~ka~iek~EEiee~fkk~~~qL~~ 555 (896)
++-.+..........+-+|.+.+..-. ..+...++.+=....+.+-+..++..+.+.++.-+..|+.
T Consensus 240 G~~~~~~a~~~~s~a~i~aAv~~~~~mn~~l~~~~kq~k~~rdn~~k~t~q~~~m~~a~~~ta~~~kd~~~~lsk 314 (1213)
T COG5283 240 GALGLLGAALAGSFAAIGAAVRRTAQMNGELMDKTKQVKGARDNLGKVTSQGEEMSDAIQETAEHIKDSGRELSK 314 (1213)
T ss_pred hhHHHHHHhhhcchhHHHHHHHHHHHHhhhhhhhHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHcchhhhhHHH
No 498
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=52.27 E-value=1.9e+02 Score=26.46 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002652 298 LKVLRDMLDAKQKELAEISRISAEQKHEMEDLNDRLSASMQSCTEANEIMKSQKVTIDELKTQL 361 (896)
Q Consensus 298 LeELq~kLee~ekeL~el~~k~~kLEsEleEL~eqLee~e~~~~eLekeik~LE~eI~ELe~qL 361 (896)
|..|..|+..+-..|.-+.-.+.+|+.+...|...+..+......|..+...++.+-..++..|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=52.22 E-value=2.9e+02 Score=28.62 Aligned_cols=152 Identities=11% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002652 319 SAEQKHEMEDLNDRLSASMQSC-----------------TEANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKA 381 (896)
Q Consensus 319 ~~kLEsEleEL~eqLee~e~~~-----------------~eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~ 381 (896)
+..|+..|..|..++....... ..+..=+..++..+..|.............-+ .+.|-.
T Consensus 1 L~~L~~~l~~L~~~~~~~d~~~~~~~~~~Fd~~LF~~~~~~L~~yl~Ei~~~l~~L~~~~~~~~~~~~~~l---aEkL~~ 77 (173)
T PF07445_consen 1 LQQLEQQLQQLAQQAAQLDRQRGEQHQARFDRQLFSCRSQRLSDYLQEIEQTLAQLQQQVEQNRLQQVAFL---AEKLVA 77 (173)
T ss_pred ChHHHHHHHHHHHHHHHHhhcccccchhhccHHHHhccCchHHHHHHHHHHHHHHHHHHHhcChHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHH
Q 002652 382 AVQKSQLETQEKLKRLSDAAS---RRELEQQEVINKLQIAEKQSSLQVESLKLKLDET-RERLVTSDNKVRLLETQVCKE 457 (896)
Q Consensus 382 qIqkl~~El~eerkk~eee~~---~~ieElee~l~KLqE~EKklr~elEdLq~eLE~l-ra~l~~lEkk~reLdk~LeEe 457 (896)
+++.+.-++..+.-+..+... ..+..+...+.+.++-++++...+.+.+..|+.. ...-..+.+++-.++.++..+
T Consensus 78 Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RC 157 (173)
T PF07445_consen 78 QIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRC 157 (173)
T ss_pred HHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHH
Q 002652 458 QNVSASWKKRVEELEN 473 (896)
Q Consensus 458 k~~~~~lqkel~elE~ 473 (896)
+..+..++..+.-.+.
T Consensus 158 r~Ai~~iE~~I~~~Er 173 (173)
T PF07445_consen 158 RQAIEKIEEQIQRRER 173 (173)
T ss_pred HHHHHHHHHHHHHHhC
No 500
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.11 E-value=4.9e+02 Score=31.18 Aligned_cols=212 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 002652 342 EANEIMKSQKVTIDELKTQLDEERNLRRVDRENAEADLKAAVQKSQLETQEKLKRLSDAASRRELEQQEVINKL------ 415 (896)
Q Consensus 342 eLekeik~LE~eI~ELe~qLEeEr~~~~EELEe~~~eLk~qIqkl~~El~eerkk~eee~~~~ieElee~l~KL------ 415 (896)
...+.+.+....+......-+.-++...+.-..+...++.+-.+|+.++.-+..... .+......+.+.+..+
T Consensus 5 ~~kKa~sRa~ekvlqk~g~~~~TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~-am~~a~~~l~e~l~eiy~p~~~ 83 (460)
T KOG3771|consen 5 GVQKALNRAPEKVLQKLGKVDETKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVR-AMLAASKKLAESLQEIYEPDWP 83 (460)
T ss_pred hhHHHhccccHHHHhhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcccc
Q ss_pred -HHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002652 416 -QIAEKQSSLQVESLKLKLD-ETRERLVTSDNKVRLLETQVCKEQNVSASWKKRVEELENEIKKLREELESEKQAAREVA 493 (896)
Q Consensus 416 -qE~EKklr~elEdLq~eLE-~lra~l~~lEkk~reLdk~LeEek~~~~~lqkel~elE~EireLe~ELE~~k~~~~Ee~ 493 (896)
....+......+.+..+++ .+...+..==.+.-..-..|... -.++......+...++-++++. .....-
T Consensus 84 g~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~-------i~KR~~Kl~DyD~~r~~~~kvq-~~k~kd 155 (460)
T KOG3771|consen 84 GRDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKA-------IAKRGRKLVDYDSARHSFEKLQ-AKKKKD 155 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHH-------HHhhcchhhhhHHHHHHHHHHH-HhcCCC
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 002652 494 WAKVSGLELDILAATRDLDFERRRLKAA-----RERIMLRETQLRAFYSTTEEISVLFARQQEQLKAMQKTLED 562 (896)
Q Consensus 494 ~~ki~~LE~Eieka~reLE~Ek~rLq~~-----rerL~~~eqq~ka~iek~EEiee~fkk~~~qL~~lq~~LEd 562 (896)
..++..-+.|+++|+..|+.-...|..+ -.|+--...-+++++....-+-....++++.|.+++..|.+
T Consensus 156 ~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~d 229 (460)
T KOG3771|consen 156 EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFD 229 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!