Query 002653
Match_columns 896
No_of_seqs 123 out of 236
Neff 2.7
Searched_HMMs 13730
Date Tue Mar 26 16:31:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002653.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1370-1374//hhsearch_scop/002653hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 9.0 35 0.0026 10.3 3.7 51 824-881 76-127 (144)
2 d1q1ra3 d.87.1.1 (A:320-422) P 5.4 53 0.0039 9.1 -0.4 12 224-235 5-16 (103)
3 d1snna_ d.115.1.2 (A:) 3,4-dih 4.8 74 0.0054 8.1 0.0 12 555-566 108-119 (219)
4 d1s9ua_ a.184.1.1 (A:) Putativ 4.8 74 0.0054 8.1 1.1 101 287-413 79-191 (207)
5 d2qjza1 a.40.1.1 (A:13-132) Mi 4.2 88 0.0064 7.6 0.2 53 308-393 34-87 (120)
6 d1t3ta1 a.5.10.1 (A:153-220) F 4.1 89 0.0065 7.5 0.1 52 514-566 3-60 (68)
7 d1k4ia_ d.115.1.2 (A:) 3,4-dih 3.9 75 0.0054 8.1 -0.5 11 556-566 94-104 (216)
8 d2od5a1 a.4.5.70 (A:6-96) Hypo 3.8 99 0.0072 7.2 1.7 47 209-256 9-60 (91)
9 d1v9va1 a.29.10.1 (A:8-108) Mi 3.3 1.2E+02 0.0087 6.7 3.6 54 519-606 42-95 (101)
10 d2fgea1 d.185.1.1 (A:540-797) 3.0 1.3E+02 0.0094 6.4 1.4 33 432-464 22-58 (258)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.02 E-value=35 Score=10.32 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 023123221002011456779999999819-9889988502899999999998532026
Q 002653 824 SVVPIGVLMLLPVTAVGHAAMLAAIQRYVP-GLIPSTYGPERLDLLRQLEKVKEMESSE 881 (896)
Q Consensus 824 RLVPFsIFiIIPfsElGHalLLPvilKlFP-nMLPSTFeseR~e~lrkL~kvKkme~~e 881 (896)
+.|=.++++.|-++-+ +-++++.|- .-+|-||+.+.++. ++++++.|.++-
T Consensus 76 K~v~g~~~~~i~~s~~-----i~~~~r~~v~p~~P~T~~~Ewqea--q~erm~~~~~nP 127 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTAL-----LLIWEKHYVYGPIPHTFEEEWVAK--QTKRMLDMKVAP 127 (144)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHTCCCCCGGGSHHHHHH--HHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHCCCCCCCCCCHHHHHH--HHHHHHHCCCCC
T ss_conf 6789999999999999-----999999970799998889999999--999999827899
No 2
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=5.42 E-value=53 Score=9.09 Aligned_cols=12 Identities=50% Similarity=1.187 Sum_probs=5.2
Q ss_pred CCCHHHHCCCCH
Q ss_conf 310224302540
Q 002653 224 EGYEWFWSEQVP 235 (896)
Q Consensus 224 ~~~eWfws~Q~P 235 (896)
+++-||||.|-.
T Consensus 5 ~~vP~FWSdQ~d 16 (103)
T d1q1ra3 5 EAAPWFWSDQYE 16 (103)
T ss_dssp CCCCEEEEEETT
T ss_pred CCCCCEEEECCC
T ss_conf 999948520389
No 3
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=4.79 E-value=74 Score=8.08 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=5.3
Q ss_pred CCCCCCHHHHHH
Q ss_conf 556650169997
Q 002653 555 RTEIDSDSFDKA 566 (896)
Q Consensus 555 ~~~~e~~s~dka 566 (896)
.+.++....|++
T Consensus 108 ~~~TGISa~DRa 119 (219)
T d1snna_ 108 KTFTGITDNDRA 119 (219)
T ss_dssp TCSSSCSHHHHH
T ss_pred CCCCCCCHHHHH
T ss_conf 777898677799
No 4
>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic dehydrogenases YnfI {Salmonella typhimurium [TaxId: 90371]}
Probab=4.78 E-value=74 Score=8.08 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=52.6
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHH--------HHHCCC--EEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 218862124431023567899789--------640024--0113588888642234777752098754556668778632
Q 002653 287 KLGPAKVSCSQFSSMISDITGRLM--------DTLVDL--VPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEE 356 (896)
Q Consensus 287 kLGsa~vSCp~F~S~i~d~~grLM--------dml~~f--vpv~q~Y~~~k~iGl~rEFL~hFGpraa~~~~~~d~~~eE 356 (896)
=+||.+..||++-|.-.+.-|.+| +....+ .+-...-...-+||++.+|+.+.--+. .
T Consensus 79 F~g~~~~~~~pyeS~y~~~e~~l~g~~~~~v~~~y~~~Gl~~~~~~~ep~DHi~~eLefma~L~~~~----------~-- 146 (207)
T d1s9ua_ 79 FIGPYALPSPPWGSVWLDRESVLFGDSTLALRQWMRENGIQFEMQQNEPEDHFGSLLLLAAWLAEND----------R-- 146 (207)
T ss_dssp HTCSSCCSSCCBHHHHHSTTCCSSCHHHHHHHHHHHHTTCC------CCTTBHHHHHHHHHHHHHTT----------C--
T ss_pred HCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----------C--
T ss_conf 4899998658921034678651144999999999999699759889999537999999999998768----------6--
Q ss_pred EEHHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHC
Q ss_conf 104499999999999968644--302555224899864345788998731101342201
Q 002653 357 VIFWVDLVQKQLQRAIDREKI--WSRLTTSESIEVLERDLAIFGFFIALGRSTQSFLSR 413 (896)
Q Consensus 357 v~FWV~L~qkqL~~AidRE~I--wsrL~tsesiEvlE~dLAifGfFiaLGRsTr~fLs~ 413 (896)
. ..++.+-.|-+ |.. .=.+.++ +-+.-+|+.++++-++.||..
T Consensus 147 ----~-----~~~~~fl~~hl~~W~~----~f~~~l~-~~~~~~fY~~la~ll~~fL~~ 191 (207)
T d1s9ua_ 147 ----H-----HECEQLLAWHLFPWSS----RFLDVFI-DHAGHPFYQALGQLARLTLAQ 191 (207)
T ss_dssp ----H-----HHHHHHHHHHTHHHHH----HHHHHHH-HHCCSHHHHHHHHHHHHHHHH
T ss_pred ----H-----HHHHHHHHHHHHHHHH----HHHHHHH-HCCCCCHHHHHHHHHHHHHHH
T ss_conf ----8-----9999999999999999----9999998-662884699999999999999
No 5
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.18 E-value=88 Score=7.57 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=33.9
Q ss_pred HHHHHHC-CCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7896400-240113588888642234777752098754556668778632104499999999999968644302555224
Q 002653 308 RLMDTLV-DLVPISQAYYSIKDIGLHREFLAHFGPRASACRVKNDRDSEEVIFWVDLVQKQLQRAIDREKIWSRLTTSES 386 (896)
Q Consensus 308 rLMdml~-~fvpv~q~Y~~~k~iGl~rEFL~hFGpraa~~~~~~d~~~eEv~FWV~L~qkqL~~AidRE~IwsrL~tses 386 (896)
.|||++. +-||+.++.. ++-.+.||..|| |.||.|+.|-+|-.- -.
T Consensus 34 Ql~d~l~Pg~i~l~kVkf---~a~~e~e~~~N~--------------------------klLq~af~kl~I~k~----i~ 80 (120)
T d2qjza1 34 QFMDMLFPGSIALKKVKF---QAKLEHEYIQNF--------------------------KILQAGFKRMGVDKI----IP 80 (120)
T ss_dssp HHHHHHSTTSSCGGGCCT---TCCSHHHHHHHH--------------------------HHHHHHHHHHTCCCC----CC
T ss_pred HHHHHHCCCCCHHHHHCC---CCCCHHHHHHHH--------------------------HHHHHHHHHCCCCCC----CC
T ss_conf 999877768630766026---888779999999--------------------------999999998399988----88
Q ss_pred HHHHHHH
Q ss_conf 8998643
Q 002653 387 IEVLERD 393 (896)
Q Consensus 387 iEvlE~d 393 (896)
|+.|-+.
T Consensus 81 v~kLikg 87 (120)
T d2qjza1 81 VDKLVKG 87 (120)
T ss_dssp HHHHTTC
T ss_pred HHHHHCC
T ss_conf 9998625
No 6
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.12 E-value=89 Score=7.52 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCCCCCCCCCCHHHHHH
Q ss_conf 885158888861001488989983110025533------22334444556650169997
Q 002653 514 PSNVKAAKFLSKGYDKLMDCMKEMGIARNGMIE------SAESVTYSRTEIDSDSFDKA 566 (896)
Q Consensus 514 Psnvkaa~FLskg~~~L~eC~ee~~~~~~~~~~------~~~~~~~~~~~~e~~s~dka 566 (896)
|.-++-..++..|..-|..-++++|++.+..-+ |.+.+. .+|+.|+..|+++
T Consensus 3 P~pv~~v~i~~~~~~~L~~~n~~~gLaL~~~e~~~i~~~f~~~~R-~PTd~EL~~~aQ~ 60 (68)
T d1t3ta1 3 PAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGR-NPNDIELYMFAQA 60 (68)
T ss_dssp CCCCCBCCHHHHTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS-CCBHHHHHHHHHH
T ss_pred CCCCEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
T ss_conf 998515547558999999999976888999999999999874289-9889999999624
No 7
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]}
Probab=3.95 E-value=75 Score=8.06 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=4.7
Q ss_pred CCCCCHHHHHH
Q ss_conf 56650169997
Q 002653 556 TEIDSDSFDKA 566 (896)
Q Consensus 556 ~~~e~~s~dka 566 (896)
+.++....|++
T Consensus 94 ~~TGISa~DRa 104 (216)
T d1k4ia_ 94 TTTGISAHDRA 104 (216)
T ss_dssp CSSSCSHHHHH
T ss_pred CCCCCHHHHHH
T ss_conf 66552179999
No 8
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=3.81 E-value=99 Score=7.23 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHCCCCC----CCHHHHCCC-CHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1589999675205973----102243025-40256673410012633320000
Q 002653 209 PLESLIRDKLSAKLPE----GYEWFWSEQ-VPAVVTSFINYFERDQRFTAATA 256 (896)
Q Consensus 209 pLe~~Ir~~Ls~r~P~----~~eWfws~Q-~P~vv~sFvn~le~d~rf~~at~ 256 (896)
-|-+.|++-|+.+ |. ..+|.-..- .-..-..--|+|++|+||.-.-.
T Consensus 9 rlR~~I~k~L~~~-p~NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf~kiG~ 60 (91)
T d2od5a1 9 RIREKIKKFLGDR-PRNTAEILEHINSTMRHGTTSQQLGNVLSKDKDIVKVGY 60 (91)
T ss_dssp HHHHHHHHHTSSS-CEEHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHEECE
T ss_conf 9999999999739-976899999999751148988999888860852301010
No 9
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.27 E-value=1.2e+02 Score=6.67 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 88888610014889899831100255332233444455665016999778899999999999877622468532789998
Q 002653 519 AAKFLSKGYDKLMDCMKEMGIARNGMIESAESVTYSRTEIDSDSFDKALESVEEALIRLEKLLQALHVSSSNSGKEQLKA 598 (896)
Q Consensus 519 aa~FLskg~~~L~eC~ee~~~~~~~~~~~~~~~~~~~~~~e~~s~dkalesv~~Al~rlE~Llqel~~sss~sgke~l~a 598 (896)
|-+-|.|+|..|+-|.-=|.++- +||+||+|-|-.|..+....+..
T Consensus 42 ARDCL~KS~e~lITs~YF~Else----------------------------------~LekLl~ea~erSe~~~~~~i~~ 87 (101)
T d1v9va1 42 ARDCLAKSGENLVTSRYFLEMQE----------------------------------KLERLLQDAHERSDSEEVSFIVQ 87 (101)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHH----------------------------------HHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHH----------------------------------HHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999762602714799999999----------------------------------99999999986257778899999
Q ss_pred HHHHHHHH
Q ss_conf 64139999
Q 002653 599 ACSDLEKI 606 (896)
Q Consensus 599 acsDLekI 606 (896)
.-..|=.|
T Consensus 88 lvkkLL~I 95 (101)
T d1v9va1 88 LVRKLLII 95 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999830
No 10
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.04 E-value=1.3e+02 Score=6.40 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCEEEEECCCCC-CCCEEEEEEEEE---CCCCCCCCC
Q ss_conf 133878034676-441123321321---224543357
Q 002653 432 GGSVLYYPQLSS-ISSYQLYVEVVC---EELDWLLFY 464 (896)
Q Consensus 432 gGsvl~YPQLSs-IssYQLyvEVVc---EEl~WLpFY 464 (896)
|-.+++||+... |.+.+++..+-+ |++.|||+|
T Consensus 22 ~v~~~~~~~~TNGI~Y~~~~fdl~~l~~e~~~yl~L~ 58 (258)
T d2fgea1 22 GVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLF 58 (258)
T ss_dssp SSEEEEEECCCSSEEEEEEEEECTTSCTTTGGGHHHH
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9037982469888077888734888999999878999
Done!