BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002655
(896 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 490 DKEEENFLVHAGALLTEAPKIKDWEGF------KRISLMENNITSLSAIPNCPHLRTLLL 543
D +N L ++ IK +G + ++L N + +SA+ +L L+L
Sbjct: 33 DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLIL 92
Query: 544 YRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLSFTVIRELPEE 602
N++ + +G F + +LK L L N L LP G+ L +L +L+L+ ++ LP+
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151
Query: 603 M-KALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRM 638
+ L NL L+L Y L LP + T+L+ LR+
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 496 FLVHAGALLTEAPKIKDWEGFKRISLMENNITSL--SAIPNCPHLRTLLLYRNRISMITD 553
+L G L + +K+ + L N + SL +L+ L+L N++ + D
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 554 GFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLSFTVIRELPEEM-KALVNLRY 611
G F + +L LNL N L LP G+ L +L LDLS+ ++ LPE + L L+
Sbjct: 127 GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185
Query: 612 LNLEYVYLNRLPLQLLCNFTKLQ 634
L L L +P + T LQ
Sbjct: 186 LRLYQNQLKSVPDGVFDRLTSLQ 208
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 518 RISLMENNITSLSAIPN--CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNK 575
R + + + SL++IP+ +++L L NRI+ I++ Q +L+ L L N
Sbjct: 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91
Query: 576 LPSGLSSLISLEHLDLSFTVIRELPEE-MKALVNLRYLN-LEYVYLNRLPLQLLCNFTKL 633
SSL SLEHLDLS+ + L K L +L +LN L Y L + TKL
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 634 QALRM 638
Q LR+
Sbjct: 152 QILRV 156
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 17/168 (10%)
Query: 493 EENFLVHAGALLTEAPKIKDWEGFKRISLMENNITSL--SAIPNCPHLRTLLLYRNRISM 550
+N L+H L++ I +++ +N I+ L S I + LR L++ NRI
Sbjct: 8 SKNGLIHVPKDLSQKTTI--------LNISQNYISELWTSDILSLSKLRILIISHNRIQY 59
Query: 551 ITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELP--EEMKALVN 608
+ F+F L+ L+L N + ++L+HLDLSF LP +E +
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 609 LRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKD 656
L++L L +L + + + + + L +LG GE+ED +D
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG--ETYGEKEDPEGLQD 162
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 528 SLSAIPN--CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLIS 585
SL++IP+ +++L L NRI+ I++ Q +L+ L L N SSL S
Sbjct: 16 SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 586 LEHLDLSFTVIRELPEE-MKALVNLRYLN-LEYVYLNRLPLQLLCNFTKLQALRM 638
LEHLDLS+ + L K L +L +LN L Y L + TKLQ LR+
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 519 ISLMENNITSLSA-IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLP 577
++ E ++ S+ A IP + L LY N+I+ + G F + L LNL N L LP
Sbjct: 24 VNCQERSLASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQ-LTALP 80
Query: 578 SGL-SSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCN 629
G+ L L HL L ++ +P M NL+ +L ++YL P C+
Sbjct: 81 VGVFDKLTKLTHLALHINQLKSIP--MGVFDNLK--SLTHIYLFNNPWDCECS 129
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 536 PHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTV 595
P L L N+I+ I DG F+ + +L L L N P + L+ LE L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 596 IRELPEEM-KALVNLR 610
++ELPE+M K L LR
Sbjct: 112 LKELPEKMPKTLQELR 127
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLSFTV 595
+L+ L L N++ + G F + L VL+LG N L LPS + L+ L+ L +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK 123
Query: 596 IRELPEEMKALVNLRYLNLEYVYLNRLP 623
+ ELP ++ L +L +L L+ L +P
Sbjct: 124 LTELPRGIERLTHLTHLALDQNQLKSIP 151
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 541 LLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLSFTVIREL 599
L L+ N+I+ + G F + +LK L LG N L LP G+ SL L LDL + L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 600 PEEM-KALVNLRYLNLEYVYLNRLP 623
P + LV+L+ L + L LP
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELP 128
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 536 PHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTV 595
P L L N+I+ I DG F+ + +L L L N P + L+ LE L LS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 596 IRELPEEM-KALVNLR 610
++ELPE+M K L LR
Sbjct: 112 LKELPEKMPKTLQELR 127
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 522 MENNITSLSAIPN-----CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKL 576
+E N SL ++PN L L L N++ + +G F + SL LNL N L L
Sbjct: 35 LETN--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSL 91
Query: 577 PSGL-SSLISLEHLDLSFTVIRELPEEM-KALVNLRYLNLEYVYLNRLPLQLLCNFTKLQ 634
P+G+ L L+ L L+ ++ LP+ + L L+ L L L +P + T LQ
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLSFTV 595
+L L L RN++ + F + L L+LG+N L LP G+ L SL+ L L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 596 IRELPE-EMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRML 639
++ +PE L L+ L L+ L R+P F L+ L+ML
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA---FDSLEKLKML 210
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 514 EGFKRISLMENNITSL--SAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNI 571
G K L ++ I +L S + L L L +N I+ I D F + L LNL N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN- 333
Query: 572 FLNKLPSGL-SSLISLEHLDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPLQLLCN 629
FL + S + +L LE LDLS+ IR L ++ L NL+ L L+ L +P +
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 630 FTKLQAL 636
T LQ +
Sbjct: 394 LTSLQKI 400
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 232 DAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNV 291
++ +R+ L+ E D+ L I + + +L+LDD+W L++ +
Sbjct: 210 ESFSQRLPLNIEEAKDR------LRILMLRKHPRSLLILDDVWD-------SWVLKAFDS 256
Query: 292 SSKVVFTTRSLDVCGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRC-----HSDILEL 346
+++ TTR V S+ + KY+V E+ L +EK G L +D+ E
Sbjct: 257 QCQILLTTRDKSVTDSV-----MGPKYVVPVES-SLGKEK-GLEILSLFVNMKKADLPEQ 309
Query: 347 AQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVL 384
A ++ +EC G PL + IG + + P+ W+Y K L
Sbjct: 310 AHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQL 345
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 496 FLVHAGALLTEAPKIKDWEGFKRISLMENNITSL--SAIPNCPHLRTLLLYRNRISMITD 553
+L G L + +K+ + L N + SL +L+ L+L N++ + D
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 554 GFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLSFTVIRELPEEM-KALVNLRY 611
G F + +L L L N L LP G+ L +L LDL ++ LPE + L L+
Sbjct: 127 GVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQ 185
Query: 612 LNLEYVYLNRLPLQLLCNFTKLQALRML 639
L+L L +P + T L + +L
Sbjct: 186 LSLNDNQLKSVPDGVFDRLTSLTHIWLL 213
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 24/141 (17%)
Query: 252 EKALDISNILSRKKF---VLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCGSM 308
E+A D IL +K +L+LDD+W L++ + +++ TTR V
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWD-------SWVLKAFDSQCQILLTTRDKSV---- 275
Query: 309 EADEKIEVKYLVHDEAWRLFQEKVGE-----ATLRCHSDILELAQTLARECCGLPLALKT 363
D + KY+V E+ L +EK E ++ +D+ E A ++ +EC G PL +
Sbjct: 276 -TDSVMGPKYVVPVES-SLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSL 332
Query: 364 IGRAMAYKKNPDEWKYATKVL 384
IG + + P+ W+Y K L
Sbjct: 333 IGALL--RDFPNRWEYYLKQL 351
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 516 FKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFN--IFL 573
F I +N I L P L+TLL+ NRI I +G Q +P L L L N + L
Sbjct: 44 FDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Query: 574 NKLPSGLSSLISLEHL 589
L L+SL SL +L
Sbjct: 104 GDL-DPLASLKSLTYL 118
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 72/171 (42%), Gaps = 19/171 (11%)
Query: 490 DKEEENFLVHAGALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNR 547
E E+ + ++ LT PK K +SL +N+I+ L I LR L L NR
Sbjct: 29 SNELESMVDYSNRNLTHVPKDLPPRT-KALSLSQNSISELRMPDISFLSELRVLRLSHNR 87
Query: 548 ISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELP--EEMKA 605
I + F F L+ L++ N N + SL HLDLSF LP +E
Sbjct: 88 IRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGN 144
Query: 606 LVNLRYLNL---EYVYLNRLP---LQLLCNFTKLQALRMLGCSNYSGEEED 650
L L +L L ++ L+ LP L L C L + + G GE E
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG-----GETES 190
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 528 SLSAIPN--CPHLRTLLLYRNR---ISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSS 582
+L++IP HL L++ R R I+ I D F+ + LKVL + +L+ +
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 583 LISLEHLDLSFTVIRELPE-EMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLG 640
++L L ++ + +P ++ LV LR+LNL Y ++ + +L +LQ ++++G
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Query: 509 KIKDWEGFKRISLMENNITSL--SAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLN 566
+ + + + L EN ++++ A N +LRTL L NR+ +I G F + +L L+
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 567 LGFN---IFLNKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLP 623
+ N I L+ + L +L SLE D I L +L L LE L +P
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIP 168
Query: 624 LQLLCNFTKLQALRM 638
+ L + L LR+
Sbjct: 169 TEALSHLHGLIVLRL 183
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 528 SLSAIPN--CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLIS 585
S ++IP+ +++L L N+I+ I G + +L+VL L + SL S
Sbjct: 16 SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 586 LEHLDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPL-QLLCNFTKLQALRMLGCSN 643
LEHLDLS + L L +L+YLNL L + L N T LQ LR+
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 644 YS 645
+S
Sbjct: 136 FS 137
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 528 SLSAIPN--CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLIS 585
S ++IP+ +++L L N+I+ I G + +L+VL L + SL S
Sbjct: 42 SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 586 LEHLDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPL-QLLCNFTKLQALRMLGCSN 643
LEHLDLS + L L +L+YLNL L + L N T LQ LR+
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 161
Query: 644 YS 645
+S
Sbjct: 162 FS 163
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 528 SLSAIPNCPHLRT--LLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLI 584
SL+++P T L LY NRI+ + G F + L L+L N L LP+G+ L
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78
Query: 585 SLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCN 629
L L L+ ++ +P A NLR +L +++L P C+
Sbjct: 79 QLTQLSLNDNQLKSIPR--GAFDNLR--SLTHIWLLNNPWDCACS 119
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 538 LRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIF 572
L+TL LY N+IS + G F+ + SL LNL N F
Sbjct: 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 518 RISLMENNITSL--SAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNK 575
++ L N +T + +A H++ L L N+I I++ F + LK LNL N
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 576 LPSGLSSLISLEHLDLS 592
+P L SL L+L+
Sbjct: 118 MPGSFEHLNSLTSLNLA 134
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 536 PHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNI---FLNKLPSGLSSLISLEHLDLS 592
PHL L L RN+++ I F+ ++ L LG N NK+ GL L +L D
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 593 FTVIRELPEEMKALVNLRYLNLEYVYLN 620
+ + +P + L +L LNL N
Sbjct: 114 ISCV--MPGSFEHLNSLTSLNLASNPFN 139
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 538 LRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSS---------LISLEH 588
L TL L RN + + L+ L++ L +LP L+S L++L+
Sbjct: 129 LETLTLARNPLRALPASIASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 589 LDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCS 642
L L +T IR LP + L NL+ L + L+ L + + KL+ L + GC+
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCT 240
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 810 AELKFLCLKDLENLESIYFDPLPFPQLKEIEVTGCPKLKKLP 851
A LK L LKD NL ++ D QL+++++ GC L +LP
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 559 MPSLKVLNLGFNIF--------------LNKLPSGLSSLISLEHLDLSFTVIRELPEEMK 604
+ +L++ N+ NIF L +LP+ + +L +L LDLS + LP E+
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290
Query: 605 ALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLG 640
+ L+Y + + + + L F L L+ LG
Sbjct: 291 SCFQLKY----FYFFDNMVTTLPWEFGNLCNLQFLG 322
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 559 MPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVY 618
+ +L+VL+L N L LP+ L S L++ ++ LP E L NL++L +E
Sbjct: 269 LSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327
Query: 619 LNRLPLQLLC 628
L + L++L
Sbjct: 328 LEKQFLKILT 337
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 538 LRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSL 583
L L L N+I MI +G F+P+L+ L+L N L+++P+GL L
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDL 263
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 528 SLSAIPNCPHLRT--LLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLI 584
SL+++P T L LY N+I+ + G F + L L+L N L LP+G+ L
Sbjct: 28 SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 86
Query: 585 SLEHLDLSFTVIRELP----EEMKALVNLRYLN 613
L L L+ ++ +P + +K+L ++ LN
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 119
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL NN+T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 516 FKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNK 575
+++L +T L P L TL L N++ + Q +P+L VL++ FN L
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTS 114
Query: 576 LPSG-LSSLISLEHLDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPLQLLCNFTKL 633
LP G L L L+ L L ++ LP + L L+L L LP LL L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 634 QALRMLGCSNYS 645
L + S Y+
Sbjct: 175 DTLLLQENSLYT 186
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL NN+T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL NN+T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 516 FKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNK 575
+++L +T L P L TL L N++ + Q +P+L VL++ FN L
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN-RLTS 114
Query: 576 LPSG-LSSLISLEHLDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPLQLLCNFTKL 633
LP G L L L+ L L ++ LP + L L+L L LP LL L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174
Query: 634 QALRMLGCSNYS 645
L + S Y+
Sbjct: 175 DTLLLQENSLYT 186
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 528 SLSAIPNCPHLRT--LLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLI 584
SL+++P T L LY N+I+ + G F + L L+L N L LP+G+ L
Sbjct: 20 SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLT 78
Query: 585 SLEHLDLSFTVIRELP----EEMKALVNLRYLN 613
L L L+ ++ +P + +K+L ++ LN
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL NN+T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 511 KDWEGFKRISLMENNITSLS--AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLG 568
K E K + L N IT + + +R L LY N+I+ + G F + SL LNL
Sbjct: 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161
Query: 569 FNIF 572
N F
Sbjct: 162 ANPF 165
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 538 LRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDL 591
L+TL+L NRI+ + + F + S+++L+L N P +L SL L+L
Sbjct: 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL NN+T L A + +L TLLL N + I GFF
Sbjct: 143 GLLTPTPKLE------KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 501 GALLTEAPK-IKDWEGFKRISLMENNITSLS--AIPNCPHLRTLLLYRNRISMITDGFFQ 557
G T PK + +++ I L N I++LS + N L TL+L NR+ I F
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 558 FMPSLKVLNLGFNIFLNKLPSG-LSSLISLEHLDLS 592
+ SL++L+L N ++ +P G + L +L HL +
Sbjct: 100 GLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIG 134
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSL------------------------KVLNLGFNIF 572
HL TL+L N I + G F + SL K LN+ N+
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 573 LN-KLPSGLSSLISLEHLDLSFTVIREL 599
+ KLP S+L +LEHLDLS I+ +
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 28/164 (17%)
Query: 226 KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIP 285
+LD+ +++ +R+ L+ E D+ L + + + +L+LDD+W P
Sbjct: 205 RLDQ-EESFSQRLPLNIEEAKDR------LRVLMLRKHPRSLLILDDVWDPW-------V 250
Query: 286 LQSLNVSSKVVFTTRSLDVCGSMEADEKIEVKYLVHDEAWRLFQEKVGE-----ATLRCH 340
L++ + +++ TTR V D + K++V E+ L +EK E ++
Sbjct: 251 LKAFDNQCQILLTTRDKSV-----TDSVMGPKHVVPVES-GLGREKGLEILSLFVNMK-K 303
Query: 341 SDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVL 384
D+ A ++ +EC G PL + IG + + P+ W Y + L
Sbjct: 304 EDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQL 345
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSL------------------------KVLNLGFNIF 572
HL TL+L N I + G F + SL K LN+ N+
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 573 LN-KLPSGLSSLISLEHLDLSFTVIREL 599
+ KLP S+L +LEHLDLS I+ +
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSL------------------------KVLNLGFNIF 572
HL TL+L N I + G F + SL K LN+ N+
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 573 LN-KLPSGLSSLISLEHLDLSFTVIREL 599
+ KLP S+L +LEHLDLS I+ +
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3V85|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of The Protein
Q9siy3 From Arabidopsis Thaliana
Length = 210
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 59/153 (38%), Gaps = 30/153 (19%)
Query: 691 KLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGF 750
+LL+ L LT L TP HLK +N F+ K N + ++ V R
Sbjct: 8 RLLTAAAHLRLTTLLTPY-----------HLKTLHQRNTFFDTPK--NDLSLRRAVLR-L 53
Query: 751 RSLHTVFISDCSRLKE--LTWLVFAPNLKNIDVQNCN---------NMEEIISPGKLSEV 799
R L +S S + L P L N + E + SP KLS++
Sbjct: 54 RFLQNAAVSAASPSPPRCIVSLKAKPTLANGISRVEEDEEEIEYWIGKECVESPAKLSDI 113
Query: 800 S-----EIKERQNFLAELKFLCLKDLENLESIY 827
+KE F L F+CL EN+ ++Y
Sbjct: 114 GSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVY 146
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 30/115 (26%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNL----------GFNIFLNKL---------- 576
HL L L RN I I G F + +L L L G ++L+KL
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 577 ---PS-GLSSLISLEHLDLS----FTVIRELPEEMKALVNLRYLNLEYVYLNRLP 623
PS + + SL LDL + I E + L NLRYLNL L +P
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREIP 201
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSL------------------------KVLNLGFNIF 572
HL TL+L N I + G F + SL K LN+ N+
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 573 LN-KLPSGLSSLISLEHLDLSFTVIREL 599
+ KLP S+L +LEHLDLS I+ +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSL------------------------KVLNLGFNIF 572
HL TL+L N I + G F + SL K LN+ N+
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 573 LN-KLPSGLSSLISLEHLDLSFTVIREL 599
+ KLP S+L +LEHLDLS I+ +
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 536 PHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFN----IFLNKLPSGLSSLISLEHLDL 591
P L+ L L R I I DG +Q + L L L N + L SGLSSL L L+
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVALET 112
Query: 592 SFTVIRELPEEMKALVNLRYLNLEYVYLNRLPL-QLLCNFTKLQALRM 638
+ + P + L L+ LN+ + + L + N T L+ L +
Sbjct: 113 NLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 511 KDWEGFKRIS---LMENNITSLS--AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVL 565
K W G +S L N I S S + L L+ +++ + + +LK L
Sbjct: 69 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 128
Query: 566 NLGFN-IFLNKLPSGLSSLISLEHLDLSFTVIREL 599
N+ N I KLP+ S+L +L H+DLS+ I+ +
Sbjct: 129 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 511 KDWEGFKRIS---LMENNITSLS--AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVL 565
K W G +S L N I S S + L L+ +++ + + +LK L
Sbjct: 74 KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133
Query: 566 NLGFN-IFLNKLPSGLSSLISLEHLDLSFTVIREL 599
N+ N I KLP+ S+L +L H+DLS+ I+ +
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 513 WEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIF 572
+ GF I + ++ N P L L+L RN +S + G F P L L++ N
Sbjct: 105 YMGFNAIRYLPPHV-----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 573 LNKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPL 624
+ SL++L LS + + ++ + +L + N+ Y L+ L +
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAI 209
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 28/166 (16%)
Query: 478 IRDMALWIACKIDKEEENFLVHAGALLTEAPKIKDWEGFKRISLMEN---NITSLSAIPN 534
+RD AL I + FL +G L PKI I L EN N+ L +
Sbjct: 369 LRDNALTTIHFIPSIPDIFL--SGNKLVTLPKINLTANL--IHLSENRLENLDILYFLLR 424
Query: 535 CPHLRTLLLYRNRISMIT-DGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSF 593
PHL+ L+L +NR S + D PSL+ L LG N+ L L++
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM-----------------LQLAW 467
Query: 594 TVIRELP-EEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRM 638
EL + + L +L+ L L + YLN LP + + T L+ L +
Sbjct: 468 ET--ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL N++T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 28/114 (24%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPS-GLSSLISLEHLDLSFTV 595
HL L L +N + I G F +PSL L L F+ L +P+ L L L L
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 596 IRELPE---------------EMK-----------ALVNLRYLNLEYVYLNRLP 623
I +P E+K LVNLRYLNL L +P
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP 172
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 559 MPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVI-RELPEEMKALVNLRYLNLE 615
MP L +LNLG N +P + L L LDLS + +P+ M AL L ++L
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 528 SLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLN-KLPSGLSSLISL 586
+L A L+ L+ ++ + + + +LK LN+ N+ + KLP S+L +L
Sbjct: 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175
Query: 587 EHLDLSFTVIREL 599
EHLDLS I+ +
Sbjct: 176 EHLDLSSNKIQSI 188
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 559 MPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVI-RELPEEMKALVNLRYLNLE 615
MP L +LNLG N +P + L L LDLS + +P+ M AL L ++L
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 523 ENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSS 582
N I+ ++ + + P L +L L N+I+ IT + L L+L N + +P L+
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 173
Query: 583 LISLEHLDLSFTVIRELPEEMKALVNLRYLNL 614
L L++L LS I +L +AL L+ L++
Sbjct: 174 LTKLQNLYLSKNHISDL----RALAGLKNLDV 201
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 26/113 (23%)
Query: 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNI----------FLNKL---------- 576
HL L L +N + I G F +PSL L L N +L+KL
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 577 ---PS-GLSSLISLEHLDLSFTVIRELPEE--MKALVNLRYLNLEYVYLNRLP 623
PS + + SL LDL E E + LVNLRYLNL L +P
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP 172
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 528 SLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLN-KLPSGLSSLISL 586
+L A L+ L+ ++ + + + +LK LN+ N+ + KLP S+L +L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 587 EHLDLSFTVIREL 599
EHLDLS I+ +
Sbjct: 152 EHLDLSSNKIQSI 164
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 25/94 (26%)
Query: 531 AIPNCPHLRTLLLYRNRISMITDGFFQFMPSL------------------------KVLN 566
A + HL TL+L N I + G F + SL K LN
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 567 LGFNIFLN-KLPSGLSSLISLEHLDLSFTVIREL 599
+ N+ + KLP S+L +LEHLDLS I+ +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL N +T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL N +T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 518 RISLMENNITSLSAIPNCPH--------LRTLLLYRNRISMITDGFFQFMPSLKVLNLGF 569
R+ L N + SL PH L L L +N+I + DG F + L +L L
Sbjct: 32 RLELESNKLQSL------PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 570 NIFLNKLPSGL-SSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLC 628
N L LP+G+ L L+ L L ++ +P+ + R +L+ ++L+ P C
Sbjct: 86 N-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD----RLTSLQKIWLHTNPWDCSC 140
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 519 ISLMENNITSLSA--IPN-CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNK 575
+ L NN++ L A P +L +LLL N ++ I+ F +P+L+ L+L N L+
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHT 102
Query: 576 LPSGL-SSLISLEHLDLS----FTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNF 630
L L S L +LE L L V R E+M L+ L L ++R P++L+ +
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM---AQLQKLYLSQNQISRFPVELIKDG 159
Query: 631 TKLQALRMLGCSN 643
KL L +L S+
Sbjct: 160 NKLPKLMLLDLSS 172
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 22/70 (31%)
Query: 523 ENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLG---FNIFLNK---- 575
+NN+TSL A+P P LRTL + N+++ SL VL G +IF N
Sbjct: 70 DNNLTSLPALP--PELRTLEVSGNQLT-----------SLPVLPPGLLELSIFSNPLTHL 116
Query: 576 --LPSGLSSL 583
LPSGL L
Sbjct: 117 PALPSGLCKL 126
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 573 LNKLPSGLSSLISLEHLDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPLQLLCNFT 631
L+ +PSG+ + E LDL T + L + + L L +LNL+Y L L + + T
Sbjct: 26 LDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 632 KLQALRM 638
+L L +
Sbjct: 84 ELGTLGL 90
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 573 LNKLPSGLSSLISLEHLDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPLQLLCNFT 631
L+ +PSG+ + E LDL T + L + + L L +LNL+Y L L + + T
Sbjct: 26 LDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 632 KLQALRM 638
+L L +
Sbjct: 84 ELGTLGL 90
>pdb|1Z56|C Chain C, Co-Crystal Structure Of Lif1p-Lig4p
Length = 264
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 33/126 (26%)
Query: 734 LKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTWLVFAPNLKNIDVQNCNNMEEIISP 793
+ + E + L+ RG+ LH ++ DC K L ++ PN C N
Sbjct: 59 ISCKTTTECKALIDRGYDILHPNWVLDCIAYKRL--ILIEPNY-------CFN------- 102
Query: 794 GKLSEVSEIKERQNFLAELKFLCLKD-LEN------LESIYFDPLPFPQLKEIEVTGCPK 846
+ ++ +AE + CL D EN L S+Y L P + E+E+ +
Sbjct: 103 --------VSQKMRAVAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDS--E 152
Query: 847 LKKLPL 852
+++ PL
Sbjct: 153 VRRFPL 158
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL N +T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFF 556
LLT PK++ ++SL N +T L A + +L TLLL N + I GFF
Sbjct: 142 GLLTPTPKLE------KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 504 LTEAPKIKDWEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLK 563
+T+ +K+ + L N + ++SAI ++TL L +I+ +T + +L+
Sbjct: 81 ITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQ 138
Query: 564 VLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIREL 599
VL L N N P L+ L +L++L + + +L
Sbjct: 139 VLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDL 172
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 523 ENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSS 582
N I+ ++ + + P L +L L N+I+ IT + L L+L N + +P L+
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 583 LISLEHLDLSFTVIRELPEEMKALVNLRYLNL 614
L L++L LS I +L +AL L+ L++
Sbjct: 177 LTKLQNLYLSKNHISDL----RALAGLKNLDV 204
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 226 KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIP 285
+LD+ +++ +R+ L+ E D+ L + + + +L+LDD+W P
Sbjct: 212 RLDQ-EESFSQRLPLNIEEAKDR------LRVLMLRKHPRSLLILDDVWDPW-------V 257
Query: 286 LQSLNVSSKVVFTTRSLDVCGSMEADEKIEVKYLVHDEAWRLFQEKVGE-----ATLRCH 340
L++ + +++ TT V D + K++V E+ L +EK E ++
Sbjct: 258 LKAFDNQCQILLTTSDKSV-----TDSVMGPKHVVPVES-GLGREKGLEILSLFVNMK-K 310
Query: 341 SDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVL 384
D+ A ++ +EC G PL + IG + + P+ W Y + L
Sbjct: 311 EDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQL 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,564,482
Number of Sequences: 62578
Number of extensions: 976289
Number of successful extensions: 2608
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 2383
Number of HSP's gapped (non-prelim): 269
length of query: 896
length of database: 14,973,337
effective HSP length: 108
effective length of query: 788
effective length of database: 8,214,913
effective search space: 6473351444
effective search space used: 6473351444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)