Query 002655
Match_columns 896
No_of_seqs 623 out of 4079
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 04:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.6E-98 8E-103 874.4 49.8 838 14-885 8-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-64 5.7E-69 624.7 49.0 639 157-853 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-44 4.5E-49 384.4 17.9 282 162-447 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 4.4E-20 9.5E-25 230.8 17.3 332 512-868 116-463 (968)
5 KOG0444 Cytoskeletal regulator 99.8 2.2E-22 4.7E-27 212.9 -5.4 328 495-853 35-381 (1255)
6 PLN03210 Resistant to P. syrin 99.8 4E-19 8.7E-24 221.8 21.5 314 502-852 599-948 (1153)
7 PLN00113 leucine-rich repeat r 99.8 2E-19 4.4E-24 224.7 18.5 327 511-867 161-509 (968)
8 KOG4194 Membrane glycoprotein 99.8 8.3E-20 1.8E-24 192.7 3.8 319 512-864 100-446 (873)
9 KOG4194 Membrane glycoprotein 99.8 8.4E-20 1.8E-24 192.6 2.9 289 513-841 148-446 (873)
10 KOG0444 Cytoskeletal regulator 99.8 2E-20 4.4E-25 198.2 -1.8 289 512-841 76-393 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 1.3E-17 2.8E-22 168.9 -2.1 312 508-845 200-539 (565)
12 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.1E-18 159.3 15.4 251 496-821 205-456 (788)
13 KOG0472 Leucine-rich repeat pr 99.5 3.9E-16 8.6E-21 158.2 -8.9 126 510-638 64-190 (565)
14 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.7E-20 136.8 -5.6 161 504-681 23-186 (264)
15 KOG4658 Apoptotic ATPase [Sign 99.4 9.3E-14 2E-18 164.7 6.5 316 506-853 537-866 (889)
16 PRK15387 E3 ubiquitin-protein 99.4 2.6E-12 5.6E-17 149.1 14.4 254 516-845 203-456 (788)
17 KOG0618 Serine/threonine phosp 99.4 3.2E-14 7E-19 159.2 -3.3 268 515-822 220-488 (1081)
18 PRK15370 E3 ubiquitin-protein 99.4 3.8E-12 8.2E-17 148.8 13.2 246 517-821 181-426 (754)
19 PRK04841 transcriptional regul 99.4 5.1E-11 1.1E-15 148.6 24.3 292 156-486 13-332 (903)
20 KOG0618 Serine/threonine phosp 99.4 1.1E-13 2.4E-18 155.0 -0.0 296 516-852 23-327 (1081)
21 PRK15370 E3 ubiquitin-protein 99.3 4.1E-12 8.9E-17 148.5 11.1 245 536-845 178-426 (754)
22 KOG0617 Ras suppressor protein 99.3 8.8E-14 1.9E-18 125.0 -3.5 165 526-735 23-189 (264)
23 PRK00411 cdc6 cell division co 99.3 4.8E-10 1E-14 125.2 25.2 294 156-467 29-358 (394)
24 TIGR03015 pepcterm_ATPase puta 99.2 9.8E-10 2.1E-14 115.9 22.1 180 179-368 42-242 (269)
25 TIGR02928 orc1/cdc6 family rep 99.2 7.3E-09 1.6E-13 114.5 27.2 296 157-467 15-350 (365)
26 KOG4237 Extracellular matrix p 99.2 1.9E-12 4.1E-17 131.8 -2.4 275 497-792 51-339 (498)
27 PF01637 Arch_ATPase: Archaeal 99.1 2.9E-10 6.4E-15 117.3 11.5 195 159-363 1-233 (234)
28 COG2909 MalT ATP-dependent tra 99.1 2.5E-09 5.5E-14 120.4 17.7 293 157-487 19-339 (894)
29 TIGR00635 ruvB Holliday juncti 99.1 3.8E-09 8.2E-14 113.4 18.7 276 157-468 4-290 (305)
30 PRK00080 ruvB Holliday junctio 99.1 3.6E-09 7.8E-14 114.3 16.7 275 157-467 25-310 (328)
31 PF05729 NACHT: NACHT domain 99.0 3.1E-09 6.7E-14 103.0 12.0 144 181-332 1-163 (166)
32 KOG4237 Extracellular matrix p 99.0 2.3E-11 5E-16 124.0 -4.1 271 537-845 68-357 (498)
33 KOG4341 F-box protein containi 98.9 6.3E-11 1.4E-15 122.0 -2.9 279 536-869 138-438 (483)
34 cd00116 LRR_RI Leucine-rich re 98.9 2.7E-10 5.8E-15 123.8 1.2 108 533-641 20-147 (319)
35 PF14580 LRR_9: Leucine-rich r 98.9 9.2E-10 2E-14 104.8 4.1 102 515-619 20-125 (175)
36 PF14580 LRR_9: Leucine-rich r 98.9 2.5E-09 5.4E-14 101.8 5.5 115 523-641 6-123 (175)
37 cd00116 LRR_RI Leucine-rich re 98.9 7.6E-10 1.6E-14 120.2 2.2 65 556-620 77-150 (319)
38 PRK06893 DNA replication initi 98.8 8.2E-08 1.8E-12 97.6 12.9 153 179-366 38-205 (229)
39 PTZ00112 origin recognition co 98.7 3.7E-07 7.9E-12 104.1 17.2 211 156-368 754-986 (1164)
40 COG3903 Predicted ATPase [Gene 98.6 5.2E-08 1.1E-12 101.9 6.8 290 179-487 13-315 (414)
41 TIGR03420 DnaA_homol_Hda DnaA 98.6 4.9E-07 1.1E-11 92.5 13.3 169 162-367 22-204 (226)
42 COG3899 Predicted ATPase [Gene 98.6 1.1E-06 2.5E-11 105.4 18.1 307 159-483 2-383 (849)
43 PRK13342 recombination factor 98.6 8.3E-07 1.8E-11 98.9 15.9 175 157-365 12-197 (413)
44 KOG0532 Leucine-rich repeat (L 98.6 3.2E-09 7E-14 113.6 -3.6 169 515-705 76-245 (722)
45 PRK04195 replication factor C 98.6 5E-06 1.1E-10 94.6 21.9 182 157-368 14-206 (482)
46 PRK07003 DNA polymerase III su 98.6 2.9E-06 6.2E-11 96.7 19.1 196 157-366 16-223 (830)
47 KOG4341 F-box protein containi 98.6 2.5E-09 5.4E-14 110.5 -4.8 285 515-852 139-444 (483)
48 KOG1259 Nischarin, modulator o 98.6 1.1E-08 2.4E-13 100.8 -0.2 127 511-641 281-409 (490)
49 COG2256 MGS1 ATPase related to 98.5 6.8E-07 1.5E-11 93.0 12.5 167 156-360 29-208 (436)
50 PTZ00202 tuzin; Provisional 98.5 3.1E-06 6.7E-11 89.7 17.4 161 156-332 261-434 (550)
51 KOG3207 Beta-tubulin folding c 98.5 2.5E-08 5.4E-13 103.8 1.0 208 533-783 118-335 (505)
52 PF13173 AAA_14: AAA domain 98.5 2.8E-07 6.1E-12 84.5 7.7 120 180-324 2-127 (128)
53 PF13401 AAA_22: AAA domain; P 98.5 4.8E-07 1E-11 83.6 8.4 119 179-301 3-125 (131)
54 TIGR02903 spore_lon_C ATP-depe 98.5 2E-05 4.3E-10 91.7 23.5 202 157-367 154-398 (615)
55 PRK14961 DNA polymerase III su 98.5 9E-06 1.9E-10 88.9 19.4 190 157-361 16-217 (363)
56 PRK12402 replication factor C 98.5 5.2E-06 1.1E-10 90.8 17.7 194 157-363 15-225 (337)
57 PRK05564 DNA polymerase III su 98.4 4.8E-06 1E-10 89.4 16.6 179 158-363 5-189 (313)
58 cd00009 AAA The AAA+ (ATPases 98.4 1.6E-06 3.4E-11 82.1 11.1 123 160-303 1-131 (151)
59 COG1474 CDC6 Cdc6-related prot 98.4 2E-05 4.4E-10 85.1 20.2 202 157-364 17-238 (366)
60 PRK08727 hypothetical protein; 98.4 4.1E-06 9E-11 85.4 14.0 148 179-361 40-201 (233)
61 PRK12323 DNA polymerase III su 98.4 1.3E-05 2.8E-10 90.4 18.7 196 157-363 16-224 (700)
62 PRK14960 DNA polymerase III su 98.4 1.2E-05 2.6E-10 90.9 18.1 192 157-362 15-217 (702)
63 PRK14963 DNA polymerase III su 98.4 1.6E-05 3.6E-10 89.7 19.2 192 157-361 14-214 (504)
64 PF13855 LRR_8: Leucine rich r 98.3 4.8E-07 1E-11 70.6 4.2 60 536-596 1-61 (61)
65 COG4886 Leucine-rich repeat (L 98.3 3.7E-07 8.1E-12 102.1 5.1 119 519-640 98-218 (394)
66 PF13191 AAA_16: AAA ATPase do 98.3 1.6E-06 3.4E-11 85.7 8.9 47 159-205 2-49 (185)
67 cd01128 rho_factor Transcripti 98.3 1.4E-06 3E-11 88.7 8.4 92 179-275 15-114 (249)
68 PLN03025 replication factor C 98.3 4.3E-06 9.3E-11 90.0 12.7 180 157-361 13-197 (319)
69 PRK00440 rfc replication facto 98.3 1.3E-05 2.8E-10 86.9 16.4 178 157-361 17-200 (319)
70 PRK14949 DNA polymerase III su 98.3 7.8E-06 1.7E-10 95.2 15.1 183 157-364 16-221 (944)
71 PRK14962 DNA polymerase III su 98.3 2.1E-05 4.6E-10 88.0 18.2 188 157-368 14-223 (472)
72 PRK08084 DNA replication initi 98.3 7.7E-06 1.7E-10 83.5 13.3 171 158-365 24-210 (235)
73 KOG0532 Leucine-rich repeat (L 98.3 9.4E-08 2E-12 102.6 -1.2 128 510-641 117-244 (722)
74 KOG1259 Nischarin, modulator o 98.3 1.4E-07 3E-12 93.2 -0.1 109 513-624 306-416 (490)
75 PRK08691 DNA polymerase III su 98.2 2.5E-05 5.4E-10 89.2 16.7 190 157-362 16-218 (709)
76 PRK14956 DNA polymerase III su 98.2 8.6E-06 1.9E-10 89.4 12.5 189 157-360 18-218 (484)
77 PF05496 RuvB_N: Holliday junc 98.2 1.5E-05 3.2E-10 77.8 12.4 176 157-368 24-225 (233)
78 PRK08903 DnaA regulatory inact 98.2 9.5E-06 2.1E-10 82.9 11.9 169 160-368 22-203 (227)
79 KOG2028 ATPase related to the 98.2 2.1E-05 4.6E-10 80.3 13.7 160 171-359 155-331 (554)
80 TIGR02397 dnaX_nterm DNA polym 98.2 3.7E-05 8E-10 84.7 17.3 185 157-365 14-219 (355)
81 TIGR01242 26Sp45 26S proteasom 98.2 1E-05 2.2E-10 88.8 12.7 172 157-358 122-328 (364)
82 KOG3207 Beta-tubulin folding c 98.2 3.8E-07 8.2E-12 95.2 1.1 129 513-643 120-258 (505)
83 PRK13341 recombination factor 98.2 9.2E-06 2E-10 95.3 12.5 169 157-359 28-212 (725)
84 PRK06645 DNA polymerase III su 98.2 3.5E-05 7.5E-10 86.6 16.6 194 157-361 21-226 (507)
85 PRK14957 DNA polymerase III su 98.2 2.1E-05 4.7E-10 88.8 14.9 187 157-367 16-224 (546)
86 PRK07471 DNA polymerase III su 98.2 4.7E-05 1E-09 82.5 16.9 197 157-364 19-238 (365)
87 PF00308 Bac_DnaA: Bacterial d 98.2 3.1E-05 6.6E-10 78.0 14.3 183 158-364 10-208 (219)
88 KOG2120 SCF ubiquitin ligase, 98.2 1.2E-07 2.6E-12 93.8 -3.0 62 749-821 311-374 (419)
89 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 67.6 3.8 56 585-640 2-58 (61)
90 PRK09376 rho transcription ter 98.2 6.2E-06 1.4E-10 87.3 9.1 99 169-275 159-267 (416)
91 PRK14958 DNA polymerase III su 98.2 5.5E-05 1.2E-09 85.7 17.1 182 157-362 16-218 (509)
92 PRK05642 DNA replication initi 98.2 2.5E-05 5.3E-10 79.7 13.1 151 180-365 45-209 (234)
93 PRK14951 DNA polymerase III su 98.2 4.2E-05 9.1E-10 87.7 16.1 197 157-362 16-223 (618)
94 PLN03150 hypothetical protein; 98.1 4.4E-06 9.5E-11 98.0 8.3 104 537-641 419-525 (623)
95 PRK07994 DNA polymerase III su 98.1 2.9E-05 6.4E-10 89.1 14.6 191 157-362 16-218 (647)
96 PRK09087 hypothetical protein; 98.1 1.9E-05 4.1E-10 79.8 11.6 143 179-365 43-196 (226)
97 PRK09112 DNA polymerase III su 98.1 5.6E-05 1.2E-09 81.4 15.7 198 157-365 23-241 (351)
98 TIGR00678 holB DNA polymerase 98.1 5.4E-05 1.2E-09 74.7 14.5 88 263-359 95-186 (188)
99 PRK14964 DNA polymerase III su 98.1 5.5E-05 1.2E-09 84.3 15.8 181 157-361 13-214 (491)
100 PRK07940 DNA polymerase III su 98.1 7.7E-05 1.7E-09 81.5 16.4 187 157-364 5-213 (394)
101 COG4886 Leucine-rich repeat (L 98.1 2.3E-06 5.1E-11 95.7 4.4 127 511-640 113-241 (394)
102 PF14516 AAA_35: AAA-like doma 98.1 0.0018 4E-08 69.8 26.1 199 157-370 11-245 (331)
103 PRK14087 dnaA chromosomal repl 98.1 7.5E-05 1.6E-09 83.6 15.3 167 180-366 141-321 (450)
104 PRK05896 DNA polymerase III su 98.0 7.3E-05 1.6E-09 84.6 15.0 196 157-366 16-223 (605)
105 PRK14955 DNA polymerase III su 98.0 5.2E-05 1.1E-09 83.9 13.6 199 157-364 16-229 (397)
106 PRK11331 5-methylcytosine-spec 98.0 8E-05 1.7E-09 80.9 14.4 108 157-276 175-284 (459)
107 TIGR00767 rho transcription te 98.0 2E-05 4.2E-10 84.1 9.0 93 179-275 167-266 (415)
108 PLN03150 hypothetical protein; 98.0 1.3E-05 2.8E-10 94.1 8.4 103 515-617 419-525 (623)
109 PRK14969 DNA polymerase III su 98.0 9.2E-05 2E-09 84.5 15.0 186 157-366 16-223 (527)
110 PRK14959 DNA polymerase III su 98.0 0.00018 3.9E-09 81.9 17.1 197 157-368 16-225 (624)
111 PRK14970 DNA polymerase III su 98.0 0.00016 3.4E-09 79.8 16.4 186 157-365 17-211 (367)
112 PRK14954 DNA polymerase III su 98.0 0.00029 6.4E-09 81.2 18.6 201 157-365 16-230 (620)
113 PRK09111 DNA polymerase III su 98.0 0.00013 2.9E-09 83.9 15.8 196 157-364 24-233 (598)
114 PF12799 LRR_4: Leucine Rich r 98.0 9.9E-06 2.1E-10 57.7 4.1 40 585-624 2-41 (44)
115 KOG2227 Pre-initiation complex 98.0 0.00051 1.1E-08 73.3 18.2 208 156-368 149-376 (529)
116 PRK03992 proteasome-activating 97.9 9.1E-05 2E-09 81.7 13.3 172 157-358 131-337 (389)
117 TIGR02881 spore_V_K stage V sp 97.9 0.00011 2.3E-09 76.7 12.9 154 158-334 7-193 (261)
118 PRK14952 DNA polymerase III su 97.9 0.00056 1.2E-08 78.3 19.1 198 157-369 13-225 (584)
119 TIGR02880 cbbX_cfxQ probable R 97.9 0.00024 5.1E-09 74.7 14.9 156 158-334 23-210 (284)
120 PRK07764 DNA polymerase III su 97.9 0.00021 4.6E-09 85.1 16.1 194 157-366 15-224 (824)
121 PF05621 TniB: Bacterial TniB 97.9 0.00038 8.3E-09 71.4 15.5 202 157-363 34-260 (302)
122 PRK08451 DNA polymerase III su 97.9 0.0003 6.5E-09 79.3 16.2 193 157-364 14-218 (535)
123 TIGR00362 DnaA chromosomal rep 97.9 0.00036 7.9E-09 77.9 17.0 159 180-362 136-308 (405)
124 PRK14950 DNA polymerase III su 97.9 0.00013 2.8E-09 84.9 13.7 194 157-364 16-221 (585)
125 PRK14088 dnaA chromosomal repl 97.9 0.0003 6.5E-09 78.7 16.1 158 180-361 130-302 (440)
126 KOG2982 Uncharacterized conser 97.9 1E-05 2.2E-10 80.4 3.7 84 533-617 68-156 (418)
127 PRK00149 dnaA chromosomal repl 97.9 0.00032 7E-09 79.3 16.4 180 159-362 125-320 (450)
128 KOG2120 SCF ubiquitin ligase, 97.9 1.2E-06 2.6E-11 86.9 -2.9 184 538-764 187-376 (419)
129 CHL00181 cbbX CbbX; Provisiona 97.9 0.00034 7.4E-09 73.4 15.1 133 181-334 60-211 (287)
130 TIGR03345 VI_ClpV1 type VI sec 97.9 0.0002 4.3E-09 86.5 15.0 182 157-357 187-389 (852)
131 KOG2543 Origin recognition com 97.8 8.4E-05 1.8E-09 77.0 10.1 167 156-331 5-192 (438)
132 PRK07133 DNA polymerase III su 97.8 0.00042 9E-09 80.3 16.8 189 157-365 18-221 (725)
133 TIGR02639 ClpA ATP-dependent C 97.8 8.7E-05 1.9E-09 88.9 11.9 156 158-332 183-358 (731)
134 PRK06620 hypothetical protein; 97.8 0.00015 3.2E-09 72.6 11.3 134 181-362 45-187 (214)
135 KOG0989 Replication factor C, 97.8 9.3E-05 2E-09 74.5 9.6 182 157-359 36-225 (346)
136 PRK14971 DNA polymerase III su 97.8 0.00046 9.9E-09 80.1 16.7 180 157-361 17-219 (614)
137 KOG1909 Ran GTPase-activating 97.8 2.8E-06 6.1E-11 86.5 -1.2 87 533-620 27-133 (382)
138 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.9E-10 56.3 3.2 40 560-600 1-40 (44)
139 KOG0531 Protein phosphatase 1, 97.8 2.2E-06 4.7E-11 96.0 -2.4 121 515-640 73-195 (414)
140 TIGR00763 lon ATP-dependent pr 97.8 0.0021 4.6E-08 77.6 22.9 49 156-204 319-371 (775)
141 PRK06305 DNA polymerase III su 97.8 0.00052 1.1E-08 76.9 16.1 178 157-364 17-223 (451)
142 PRK14953 DNA polymerase III su 97.8 0.00081 1.8E-08 75.9 17.3 180 157-364 16-220 (486)
143 KOG1859 Leucine-rich repeat pr 97.8 2E-06 4.2E-11 95.2 -3.7 101 535-640 163-263 (1096)
144 PHA02544 44 clamp loader, smal 97.7 0.00019 4.1E-09 77.5 11.6 146 157-330 21-171 (316)
145 PRK14948 DNA polymerase III su 97.7 0.0008 1.7E-08 78.1 16.9 196 157-364 16-222 (620)
146 PRK14086 dnaA chromosomal repl 97.7 0.0023 5E-08 72.8 19.9 158 180-361 314-485 (617)
147 PRK15386 type III secretion pr 97.7 0.00012 2.6E-09 78.7 8.6 63 556-624 48-112 (426)
148 PRK06647 DNA polymerase III su 97.7 0.00097 2.1E-08 76.5 16.5 192 157-362 16-218 (563)
149 PTZ00361 26 proteosome regulat 97.7 0.00028 6.1E-09 77.9 11.6 172 158-358 184-389 (438)
150 PTZ00454 26S protease regulato 97.7 0.0005 1.1E-08 75.4 13.6 173 157-358 145-351 (398)
151 PRK15386 type III secretion pr 97.7 9.1E-05 2E-09 79.6 7.5 82 512-604 50-135 (426)
152 CHL00095 clpC Clp protease ATP 97.7 0.0002 4.3E-09 87.0 11.3 156 158-331 180-353 (821)
153 KOG1859 Leucine-rich repeat pr 97.6 1.6E-06 3.4E-11 95.9 -6.3 123 513-640 163-288 (1096)
154 COG3267 ExeA Type II secretory 97.6 0.0019 4.1E-08 63.9 15.3 180 179-366 50-247 (269)
155 PRK05707 DNA polymerase III su 97.6 0.0012 2.6E-08 70.6 15.3 95 263-364 105-203 (328)
156 PRK10865 protein disaggregatio 97.6 0.00037 8.1E-09 84.4 12.1 156 158-332 179-354 (857)
157 PRK05563 DNA polymerase III su 97.6 0.0016 3.6E-08 75.0 16.7 190 157-361 16-217 (559)
158 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.2E-09 69.7 5.4 102 515-617 43-150 (233)
159 COG0593 DnaA ATPase involved i 97.6 0.0018 4E-08 69.9 15.7 139 179-340 112-265 (408)
160 PRK12422 chromosomal replicati 97.5 0.0011 2.4E-08 74.0 14.0 152 180-357 141-306 (445)
161 KOG0531 Protein phosphatase 1, 97.5 1.7E-05 3.6E-10 89.0 -0.7 110 510-623 91-202 (414)
162 PRK10787 DNA-binding ATP-depen 97.5 0.003 6.5E-08 75.6 18.1 49 156-204 321-373 (784)
163 PRK14965 DNA polymerase III su 97.5 0.0011 2.4E-08 76.7 14.1 195 157-367 16-224 (576)
164 PRK07399 DNA polymerase III su 97.5 0.0028 6E-08 67.4 16.0 198 157-364 4-221 (314)
165 KOG4579 Leucine-rich repeat (L 97.5 1.1E-05 2.3E-10 71.0 -1.8 94 532-626 49-142 (177)
166 TIGR01241 FtsH_fam ATP-depende 97.5 0.0018 4E-08 74.2 15.5 173 157-358 55-260 (495)
167 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00095 2.1E-08 81.4 13.4 156 158-332 174-349 (852)
168 PF00004 AAA: ATPase family as 97.5 0.00036 7.8E-09 64.3 7.7 22 183-204 1-22 (132)
169 COG0466 Lon ATP-dependent Lon 97.5 0.0085 1.8E-07 67.8 19.1 160 156-332 322-508 (782)
170 TIGR03689 pup_AAA proteasome A 97.4 0.0013 2.8E-08 73.8 12.7 165 158-334 183-380 (512)
171 PRK11034 clpA ATP-dependent Cl 97.4 0.00057 1.2E-08 80.9 10.2 157 158-332 187-362 (758)
172 smart00382 AAA ATPases associa 97.4 0.00051 1.1E-08 64.1 8.2 88 181-277 3-91 (148)
173 COG2255 RuvB Holliday junction 97.4 0.0098 2.1E-07 59.7 16.8 174 157-366 26-225 (332)
174 PF05673 DUF815: Protein of un 97.4 0.0061 1.3E-07 60.7 15.3 49 157-205 27-77 (249)
175 KOG2982 Uncharacterized conser 97.3 3.9E-05 8.4E-10 76.4 -0.7 98 539-641 48-156 (418)
176 KOG3665 ZYG-1-like serine/thre 97.3 9.3E-05 2E-09 86.6 2.0 104 536-640 122-229 (699)
177 KOG3665 ZYG-1-like serine/thre 97.3 9.7E-05 2.1E-09 86.5 2.1 125 514-640 122-259 (699)
178 PRK10536 hypothetical protein; 97.3 0.0039 8.5E-08 62.8 13.2 54 158-218 56-109 (262)
179 CHL00176 ftsH cell division pr 97.3 0.0032 6.9E-08 73.3 14.2 171 157-356 183-386 (638)
180 COG1373 Predicted ATPase (AAA+ 97.3 0.0042 9.1E-08 68.6 14.4 135 162-328 22-163 (398)
181 COG1222 RPT1 ATP-dependent 26S 97.3 0.0074 1.6E-07 62.6 14.7 181 159-369 153-372 (406)
182 PRK08116 hypothetical protein; 97.2 0.0013 2.8E-08 68.4 9.4 101 181-301 115-220 (268)
183 PRK08769 DNA polymerase III su 97.2 0.0096 2.1E-07 63.1 15.7 174 165-365 12-209 (319)
184 PRK12608 transcription termina 97.2 0.0022 4.8E-08 68.3 10.9 105 166-275 120-231 (380)
185 PRK08118 topology modulation p 97.2 0.0002 4.4E-09 68.7 2.7 36 181-218 2-37 (167)
186 PRK08058 DNA polymerase III su 97.2 0.008 1.7E-07 64.8 15.1 161 158-331 6-181 (329)
187 PF10443 RNA12: RNA12 protein; 97.2 0.022 4.9E-07 61.4 17.7 198 162-374 1-288 (431)
188 PRK07261 topology modulation p 97.2 0.00098 2.1E-08 64.3 7.0 66 182-274 2-67 (171)
189 TIGR00602 rad24 checkpoint pro 97.1 0.0034 7.3E-08 72.5 12.2 48 157-204 84-134 (637)
190 PF13177 DNA_pol3_delta2: DNA 97.1 0.0049 1.1E-07 58.8 11.5 138 161-320 1-162 (162)
191 KOG1514 Origin recognition com 97.1 0.018 4E-07 64.9 17.2 200 157-366 396-623 (767)
192 KOG1947 Leucine rich repeat pr 97.1 8.2E-05 1.8E-09 85.9 -1.7 110 535-644 187-308 (482)
193 PRK06871 DNA polymerase III su 97.1 0.016 3.5E-07 61.5 15.6 176 166-361 11-200 (325)
194 KOG1909 Ran GTPase-activating 97.0 0.00019 4E-09 73.6 0.8 236 512-785 28-309 (382)
195 KOG0741 AAA+-type ATPase [Post 97.0 0.019 4.2E-07 62.3 15.6 143 179-354 537-704 (744)
196 PRK08181 transposase; Validate 97.0 0.0022 4.8E-08 66.2 8.6 98 181-301 107-208 (269)
197 TIGR02640 gas_vesic_GvpN gas v 97.0 0.012 2.6E-07 61.2 14.0 55 165-231 10-64 (262)
198 PF04665 Pox_A32: Poxvirus A32 97.0 0.0022 4.7E-08 64.4 7.9 36 181-221 14-49 (241)
199 PRK06090 DNA polymerase III su 97.0 0.023 4.9E-07 60.2 15.8 174 166-364 12-201 (319)
200 KOG2004 Mitochondrial ATP-depe 96.9 0.017 3.8E-07 65.0 14.9 102 157-275 411-516 (906)
201 COG0542 clpA ATP-binding subun 96.9 0.023 5E-07 66.3 16.5 106 157-275 491-604 (786)
202 PRK12377 putative replication 96.9 0.0064 1.4E-07 62.0 10.2 75 179-275 100-174 (248)
203 PRK06526 transposase; Provisio 96.9 0.0016 3.4E-08 67.0 5.8 26 180-205 98-123 (254)
204 KOG2739 Leucine-rich acidic nu 96.9 0.00039 8.4E-09 68.8 1.2 84 557-640 62-152 (260)
205 COG1223 Predicted ATPase (AAA+ 96.9 0.016 3.4E-07 57.2 12.0 171 157-357 121-318 (368)
206 CHL00195 ycf46 Ycf46; Provisio 96.9 0.014 3E-07 65.8 13.5 174 158-358 229-429 (489)
207 PRK06964 DNA polymerase III su 96.8 0.04 8.6E-07 59.1 16.3 91 263-364 131-225 (342)
208 CHL00095 clpC Clp protease ATP 96.8 0.089 1.9E-06 64.2 21.6 107 156-275 508-622 (821)
209 PRK09361 radB DNA repair and r 96.8 0.0059 1.3E-07 62.2 9.7 89 179-274 22-117 (225)
210 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3.1E-07 70.4 14.2 173 158-359 179-382 (733)
211 PRK08939 primosomal protein Dn 96.8 0.0067 1.5E-07 64.2 9.8 117 161-300 135-259 (306)
212 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0016 3.6E-08 69.0 5.1 48 158-205 52-103 (361)
213 PF00448 SRP54: SRP54-type pro 96.8 0.0072 1.6E-07 59.5 9.2 90 180-274 1-93 (196)
214 PRK04296 thymidine kinase; Pro 96.7 0.0021 4.6E-08 63.2 5.5 114 181-304 3-118 (190)
215 PRK10865 protein disaggregatio 96.7 0.012 2.5E-07 71.7 12.9 49 156-204 567-622 (857)
216 KOG0733 Nuclear AAA ATPase (VC 96.7 0.022 4.8E-07 63.0 13.3 188 157-369 190-411 (802)
217 PRK07993 DNA polymerase III su 96.7 0.034 7.5E-07 59.7 14.9 177 165-362 10-202 (334)
218 KOG0991 Replication factor C, 96.7 0.0064 1.4E-07 58.8 8.2 46 157-204 27-72 (333)
219 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0034 7.4E-08 76.0 8.0 49 156-204 565-620 (852)
220 KOG4579 Leucine-rich repeat (L 96.7 0.00015 3.4E-09 63.9 -2.5 87 515-603 54-142 (177)
221 cd01393 recA_like RecA is a b 96.7 0.017 3.8E-07 58.8 12.1 91 179-275 18-125 (226)
222 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0065 1.4E-07 74.2 10.3 64 156-224 564-634 (852)
223 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.3E-08 59.1 3.6 23 182-204 1-23 (121)
224 PF02562 PhoH: PhoH-like prote 96.7 0.0069 1.5E-07 59.4 8.2 128 161-301 4-155 (205)
225 PRK09183 transposase/IS protei 96.6 0.0021 4.5E-08 66.6 4.7 25 180-204 102-126 (259)
226 KOG0735 AAA+-type ATPase [Post 96.6 0.0097 2.1E-07 66.9 10.0 160 179-364 430-616 (952)
227 COG2812 DnaX DNA polymerase II 96.6 0.017 3.6E-07 64.6 11.9 187 157-358 16-214 (515)
228 COG0470 HolB ATPase involved i 96.6 0.01 2.3E-07 64.3 10.5 145 158-320 2-169 (325)
229 TIGR02237 recomb_radB DNA repa 96.6 0.0097 2.1E-07 59.8 9.5 89 179-274 11-107 (209)
230 PF08423 Rad51: Rad51; InterP 96.6 0.013 2.8E-07 60.5 10.3 95 179-274 37-143 (256)
231 PRK07952 DNA replication prote 96.6 0.014 3E-07 59.5 10.2 91 165-276 84-174 (244)
232 KOG1644 U2-associated snRNP A' 96.6 0.0038 8.2E-08 59.3 5.5 101 537-640 43-149 (233)
233 PF07728 AAA_5: AAA domain (dy 96.6 0.0017 3.8E-08 60.4 3.4 75 183-275 2-76 (139)
234 TIGR01243 CDC48 AAA family ATP 96.6 0.033 7.1E-07 67.3 15.1 171 158-358 454-657 (733)
235 cd01394 radB RadB. The archaea 96.6 0.021 4.6E-07 57.8 11.6 43 179-226 18-60 (218)
236 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.016 3.5E-07 59.4 10.4 96 179-275 18-126 (235)
237 PRK06835 DNA replication prote 96.5 0.074 1.6E-06 56.9 15.4 36 181-221 184-219 (329)
238 TIGR02012 tigrfam_recA protein 96.5 0.014 3E-07 61.6 9.7 87 179-275 54-144 (321)
239 KOG1969 DNA replication checkp 96.5 0.0067 1.5E-07 68.4 7.6 73 179-276 325-399 (877)
240 TIGR02639 ClpA ATP-dependent C 96.5 0.011 2.3E-07 71.3 10.0 49 156-204 453-508 (731)
241 PRK06921 hypothetical protein; 96.5 0.0075 1.6E-07 62.6 7.6 39 179-221 116-154 (266)
242 PF01695 IstB_IS21: IstB-like 96.5 0.0015 3.2E-08 63.4 2.1 73 180-275 47-119 (178)
243 PRK04132 replication factor C 96.4 0.052 1.1E-06 64.8 14.9 151 188-362 574-729 (846)
244 PRK12727 flagellar biosynthesi 96.4 0.14 3.1E-06 57.3 17.1 89 179-274 349-438 (559)
245 PRK09354 recA recombinase A; P 96.4 0.019 4.1E-07 61.2 10.1 87 179-275 59-149 (349)
246 cd00983 recA RecA is a bacter 96.4 0.018 3.8E-07 60.9 9.7 87 179-275 54-144 (325)
247 KOG2739 Leucine-rich acidic nu 96.4 0.0021 4.5E-08 63.8 2.5 104 513-618 42-154 (260)
248 COG2884 FtsE Predicted ATPase 96.3 0.0067 1.5E-07 57.1 5.6 125 179-309 27-204 (223)
249 COG1875 NYN ribonuclease and A 96.3 0.0079 1.7E-07 62.5 6.6 135 160-303 227-389 (436)
250 PF07693 KAP_NTPase: KAP famil 96.3 0.095 2.1E-06 56.8 15.6 43 163-205 2-45 (325)
251 PRK06696 uridine kinase; Valid 96.3 0.0065 1.4E-07 61.7 5.9 44 161-204 2-46 (223)
252 cd03214 ABC_Iron-Siderophores_ 96.3 0.013 2.8E-07 57.2 7.7 120 179-305 24-161 (180)
253 PRK05541 adenylylsulfate kinas 96.3 0.013 2.8E-07 57.1 7.7 36 179-219 6-41 (176)
254 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.026 5.6E-07 53.0 9.2 116 181-303 3-139 (159)
255 COG1484 DnaC DNA replication p 96.2 0.025 5.5E-07 58.2 9.8 75 179-275 104-178 (254)
256 TIGR02238 recomb_DMC1 meiotic 96.2 0.042 9.1E-07 58.4 11.7 102 172-274 88-201 (313)
257 cd03115 SRP The signal recogni 96.2 0.021 4.5E-07 55.4 8.7 89 182-275 2-93 (173)
258 KOG2228 Origin recognition com 96.2 0.032 6.9E-07 57.5 10.0 171 157-332 24-219 (408)
259 KOG1947 Leucine rich repeat pr 96.2 0.00071 1.5E-08 78.1 -2.0 239 605-871 186-441 (482)
260 PRK00771 signal recognition pa 96.2 0.037 7.9E-07 61.4 11.5 90 179-274 94-185 (437)
261 cd01133 F1-ATPase_beta F1 ATP 96.2 0.014 3E-07 59.9 7.5 92 179-275 68-174 (274)
262 cd01121 Sms Sms (bacterial rad 96.2 0.026 5.6E-07 61.4 10.1 85 179-274 81-168 (372)
263 COG0542 clpA ATP-binding subun 96.2 0.034 7.3E-07 64.9 11.3 155 159-332 172-346 (786)
264 PRK15455 PrkA family serine pr 96.2 0.0062 1.4E-07 68.0 5.1 48 157-204 76-127 (644)
265 KOG2123 Uncharacterized conser 96.1 0.0003 6.4E-09 69.6 -4.6 79 535-617 18-98 (388)
266 PRK08699 DNA polymerase III su 96.1 0.049 1.1E-06 58.3 11.7 68 264-331 113-184 (325)
267 COG1102 Cmk Cytidylate kinase 96.1 0.013 2.8E-07 53.7 5.9 45 182-242 2-46 (179)
268 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.015 3.3E-07 54.2 6.8 104 179-306 25-131 (144)
269 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.045 9.8E-07 56.1 10.8 57 171-234 12-68 (237)
270 TIGR03499 FlhF flagellar biosy 96.1 0.036 7.9E-07 58.2 10.2 88 179-273 193-281 (282)
271 PRK10733 hflB ATP-dependent me 96.1 0.068 1.5E-06 63.1 13.6 170 158-356 153-355 (644)
272 COG4608 AppF ABC-type oligopep 96.1 0.026 5.7E-07 57.0 8.6 124 179-309 38-177 (268)
273 KOG0736 Peroxisome assembly fa 96.0 0.062 1.3E-06 61.3 12.0 94 157-275 672-775 (953)
274 COG1618 Predicted nucleotide k 96.0 0.0089 1.9E-07 54.7 4.5 26 180-205 5-30 (179)
275 PRK11034 clpA ATP-dependent Cl 96.0 0.025 5.4E-07 67.3 9.5 48 157-204 458-512 (758)
276 PRK04301 radA DNA repair and r 96.0 0.054 1.2E-06 58.2 11.3 68 172-240 94-162 (317)
277 PLN03186 DNA repair protein RA 96.0 0.07 1.5E-06 57.3 11.8 101 173-274 116-228 (342)
278 PRK11889 flhF flagellar biosyn 96.0 0.076 1.6E-06 57.1 11.8 90 179-275 240-331 (436)
279 cd03238 ABC_UvrA The excision 96.0 0.025 5.3E-07 54.7 7.6 126 179-316 20-161 (176)
280 PRK06067 flagellar accessory p 96.0 0.06 1.3E-06 55.1 11.1 94 173-274 18-130 (234)
281 PRK07667 uridine kinase; Provi 95.9 0.01 2.2E-07 58.6 5.2 40 166-205 3-42 (193)
282 cd03222 ABC_RNaseL_inhibitor T 95.9 0.016 3.5E-07 56.0 6.4 102 179-306 24-136 (177)
283 cd01120 RecA-like_NTPases RecA 95.9 0.047 1E-06 52.1 9.8 40 182-226 1-40 (165)
284 cd03247 ABCC_cytochrome_bd The 95.9 0.022 4.9E-07 55.5 7.5 127 179-316 27-169 (178)
285 cd01131 PilT Pilus retraction 95.9 0.0097 2.1E-07 59.0 4.9 107 181-304 2-111 (198)
286 cd03216 ABC_Carb_Monos_I This 95.9 0.015 3.2E-07 55.8 6.0 116 179-306 25-146 (163)
287 PRK10867 signal recognition pa 95.9 0.041 8.9E-07 60.8 10.1 91 179-274 99-193 (433)
288 cd03228 ABCC_MRP_Like The MRP 95.9 0.024 5.3E-07 54.8 7.4 126 179-316 27-167 (171)
289 PLN03187 meiotic recombination 95.9 0.088 1.9E-06 56.4 12.2 101 173-274 119-231 (344)
290 KOG0730 AAA+-type ATPase [Post 95.9 0.47 1E-05 53.7 17.9 165 158-347 435-630 (693)
291 PRK14722 flhF flagellar biosyn 95.9 0.044 9.4E-07 59.2 9.8 90 179-275 136-226 (374)
292 cd03246 ABCC_Protease_Secretio 95.9 0.019 4.2E-07 55.6 6.6 126 179-316 27-168 (173)
293 TIGR00959 ffh signal recogniti 95.8 0.05 1.1E-06 60.2 10.4 92 179-274 98-192 (428)
294 PRK12723 flagellar biosynthesi 95.8 0.1 2.2E-06 57.0 12.6 91 179-275 173-265 (388)
295 PRK13531 regulatory ATPase Rav 95.8 0.012 2.7E-07 64.9 5.5 44 157-204 20-63 (498)
296 TIGR00064 ftsY signal recognit 95.8 0.1 2.2E-06 54.4 12.0 91 179-275 71-165 (272)
297 PF03308 ArgK: ArgK protein; 95.8 0.021 4.6E-07 57.2 6.5 64 165-231 14-77 (266)
298 TIGR01425 SRP54_euk signal rec 95.8 0.37 7.9E-06 53.2 16.5 58 179-241 99-157 (429)
299 cd03223 ABCD_peroxisomal_ALDP 95.8 0.034 7.4E-07 53.4 7.8 127 179-316 26-160 (166)
300 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.092 2E-06 53.6 11.4 53 179-239 19-71 (229)
301 PTZ00035 Rad51 protein; Provis 95.7 0.11 2.3E-06 56.0 12.2 103 171-274 109-223 (337)
302 KOG0733 Nuclear AAA ATPase (VC 95.7 0.18 3.8E-06 56.3 13.7 152 180-358 545-718 (802)
303 PLN00020 ribulose bisphosphate 95.7 0.024 5.3E-07 59.9 6.8 26 179-204 147-172 (413)
304 TIGR01650 PD_CobS cobaltochela 95.7 0.34 7.3E-06 51.2 15.3 43 158-204 46-88 (327)
305 KOG0734 AAA+-type ATPase conta 95.7 0.04 8.7E-07 60.0 8.4 47 158-204 305-361 (752)
306 COG1703 ArgK Putative periplas 95.7 0.018 3.9E-07 58.5 5.5 64 166-232 37-100 (323)
307 PRK06547 hypothetical protein; 95.6 0.017 3.6E-07 55.6 5.0 33 170-204 7-39 (172)
308 TIGR02239 recomb_RAD51 DNA rep 95.6 0.089 1.9E-06 56.1 11.0 69 172-241 88-157 (316)
309 PRK14974 cell division protein 95.6 0.11 2.3E-06 55.7 11.4 91 179-275 139-233 (336)
310 TIGR02236 recomb_radA DNA repa 95.6 0.095 2.1E-06 56.2 11.2 61 179-240 94-155 (310)
311 PF00485 PRK: Phosphoribulokin 95.6 0.068 1.5E-06 52.9 9.4 83 182-268 1-87 (194)
312 PRK04328 hypothetical protein; 95.6 0.066 1.4E-06 55.2 9.6 54 179-240 22-75 (249)
313 COG1066 Sms Predicted ATP-depe 95.6 0.09 2E-06 56.0 10.4 98 168-275 81-179 (456)
314 KOG0744 AAA+-type ATPase [Post 95.6 0.036 7.8E-07 56.6 7.2 82 181-275 178-261 (423)
315 TIGR02858 spore_III_AA stage I 95.6 0.079 1.7E-06 54.9 10.0 125 166-304 98-231 (270)
316 COG1136 SalX ABC-type antimicr 95.5 0.084 1.8E-06 52.5 9.6 130 179-317 30-216 (226)
317 PHA00729 NTP-binding motif con 95.5 0.017 3.8E-07 57.3 4.9 34 169-204 8-41 (226)
318 cd03229 ABC_Class3 This class 95.5 0.025 5.4E-07 55.1 6.0 26 179-204 25-50 (178)
319 PF00154 RecA: recA bacterial 95.5 0.11 2.4E-06 54.8 11.0 87 179-275 52-142 (322)
320 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.7E-07 46.8 2.9 23 182-204 1-23 (69)
321 PRK10463 hydrogenase nickel in 95.4 0.057 1.2E-06 55.9 8.4 26 179-204 103-128 (290)
322 PF13306 LRR_5: Leucine rich r 95.4 0.05 1.1E-06 49.7 7.4 102 532-639 8-111 (129)
323 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.7E-07 53.7 3.3 21 183-203 1-21 (129)
324 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.044 9.5E-07 55.4 7.2 126 179-306 29-203 (254)
325 PTZ00494 tuzin-like protein; P 95.4 0.41 8.8E-06 51.7 14.5 165 156-332 370-544 (664)
326 PTZ00301 uridine kinase; Provi 95.4 0.041 9E-07 54.7 7.1 25 180-204 3-27 (210)
327 COG0572 Udk Uridine kinase [Nu 95.4 0.047 1E-06 53.6 7.1 27 179-205 7-33 (218)
328 KOG2123 Uncharacterized conser 95.4 0.001 2.2E-08 65.9 -4.2 98 513-613 18-123 (388)
329 COG1126 GlnQ ABC-type polar am 95.4 0.12 2.5E-06 50.3 9.5 122 179-308 27-202 (240)
330 COG2607 Predicted ATPase (AAA+ 95.3 0.092 2E-06 51.6 8.9 49 157-205 60-110 (287)
331 COG0468 RecA RecA/RadA recombi 95.3 0.11 2.4E-06 53.7 10.1 91 179-275 59-152 (279)
332 PF00560 LRR_1: Leucine Rich R 95.3 0.0076 1.7E-07 35.6 1.0 17 586-602 2-18 (22)
333 PRK11823 DNA repair protein Ra 95.3 0.062 1.4E-06 60.3 9.0 93 171-274 71-166 (446)
334 PRK05703 flhF flagellar biosyn 95.3 0.14 3.1E-06 56.9 11.6 87 180-273 221-308 (424)
335 TIGR00390 hslU ATP-dependent p 95.3 0.049 1.1E-06 59.0 7.6 48 157-204 12-71 (441)
336 COG4088 Predicted nucleotide k 95.3 0.019 4.1E-07 54.7 4.0 25 181-205 2-26 (261)
337 PRK13765 ATP-dependent proteas 95.3 0.033 7.2E-07 64.7 6.9 75 157-240 31-105 (637)
338 cd03230 ABC_DR_subfamily_A Thi 95.3 0.05 1.1E-06 52.7 7.1 119 179-306 25-159 (173)
339 PTZ00088 adenylate kinase 1; P 95.3 0.019 4E-07 58.1 4.2 23 182-204 8-30 (229)
340 KOG2170 ATPase of the AAA+ sup 95.2 0.069 1.5E-06 54.3 7.9 49 157-205 82-135 (344)
341 PRK12726 flagellar biosynthesi 95.2 0.13 2.7E-06 55.2 10.3 90 179-275 205-296 (407)
342 PRK08233 hypothetical protein; 95.2 0.016 3.4E-07 56.8 3.5 25 180-204 3-27 (182)
343 cd02027 APSK Adenosine 5'-phos 95.2 0.092 2E-06 49.3 8.5 23 182-204 1-23 (149)
344 PRK09270 nucleoside triphospha 95.2 0.028 6E-07 57.3 5.3 28 178-205 31-58 (229)
345 PRK10416 signal recognition pa 95.2 0.14 3.1E-06 54.5 10.8 91 179-275 113-207 (318)
346 COG5238 RNA1 Ran GTPase-activa 95.2 0.006 1.3E-07 60.5 0.3 89 534-623 28-136 (388)
347 PF01583 APS_kinase: Adenylyls 95.2 0.02 4.3E-07 53.5 3.7 25 181-205 3-27 (156)
348 TIGR00150 HI0065_YjeE ATPase, 95.2 0.039 8.3E-07 50.1 5.4 41 165-205 7-47 (133)
349 PF06309 Torsin: Torsin; Inte 95.1 0.1 2.2E-06 46.3 7.9 48 157-204 25-77 (127)
350 TIGR00416 sms DNA repair prote 95.1 0.1 2.2E-06 58.7 9.9 96 168-274 82-180 (454)
351 PRK05201 hslU ATP-dependent pr 95.1 0.054 1.2E-06 58.7 7.4 49 156-204 14-74 (443)
352 PF13671 AAA_33: AAA domain; P 95.1 0.018 3.9E-07 53.8 3.5 23 182-204 1-23 (143)
353 PRK12724 flagellar biosynthesi 95.1 0.095 2.1E-06 57.1 9.3 57 180-241 223-281 (432)
354 KOG0728 26S proteasome regulat 95.1 0.41 8.8E-06 47.1 12.5 148 159-332 148-331 (404)
355 PRK05480 uridine/cytidine kina 95.1 0.019 4.1E-07 57.6 3.8 26 179-204 5-30 (209)
356 COG0464 SpoVK ATPases of the A 95.1 0.18 4E-06 58.0 12.1 132 179-335 275-426 (494)
357 PRK07132 DNA polymerase III su 95.0 0.85 1.8E-05 48.1 15.8 169 168-364 7-185 (299)
358 PF06745 KaiC: KaiC; InterPro 95.0 0.053 1.1E-06 55.2 6.8 89 179-274 18-125 (226)
359 COG0563 Adk Adenylate kinase a 95.0 0.037 8.1E-07 53.4 5.3 23 182-204 2-24 (178)
360 COG1224 TIP49 DNA helicase TIP 95.0 0.095 2.1E-06 54.5 8.3 50 156-205 38-90 (450)
361 TIGR00235 udk uridine kinase. 95.0 0.021 4.7E-07 57.1 3.8 26 179-204 5-30 (207)
362 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.038 8.3E-07 52.5 5.4 117 180-307 25-145 (157)
363 PRK03839 putative kinase; Prov 95.0 0.02 4.3E-07 56.0 3.5 23 182-204 2-24 (180)
364 cd01124 KaiC KaiC is a circadi 95.0 0.11 2.3E-06 51.1 8.7 44 183-233 2-45 (187)
365 PRK06762 hypothetical protein; 95.0 0.022 4.7E-07 54.8 3.6 25 180-204 2-26 (166)
366 TIGR01360 aden_kin_iso1 adenyl 95.0 0.022 4.7E-07 56.2 3.7 26 179-204 2-27 (188)
367 KOG2035 Replication factor C, 95.0 0.28 6.1E-06 49.3 11.1 209 159-386 15-260 (351)
368 TIGR00708 cobA cob(I)alamin ad 95.0 0.15 3.3E-06 48.4 9.1 116 180-302 5-140 (173)
369 PRK08533 flagellar accessory p 95.0 0.17 3.7E-06 51.4 10.2 54 179-240 23-76 (230)
370 PF03205 MobB: Molybdopterin g 94.9 0.048 1E-06 50.4 5.4 39 181-223 1-39 (140)
371 PF07726 AAA_3: ATPase family 94.8 0.018 4E-07 51.2 2.3 28 183-215 2-29 (131)
372 PRK00625 shikimate kinase; Pro 94.8 0.024 5.1E-07 54.6 3.3 23 182-204 2-24 (173)
373 TIGR00764 lon_rel lon-related 94.8 0.082 1.8E-06 61.7 8.3 75 157-240 18-92 (608)
374 PRK12678 transcription termina 94.8 0.065 1.4E-06 59.9 6.9 99 169-275 406-514 (672)
375 PF08433 KTI12: Chromatin asso 94.8 0.072 1.6E-06 55.2 7.0 25 181-205 2-26 (270)
376 PRK05986 cob(I)alamin adenolsy 94.7 0.17 3.7E-06 48.9 8.9 118 179-302 21-158 (191)
377 PF10236 DAP3: Mitochondrial r 94.7 1.3 2.8E-05 47.2 16.6 49 313-361 258-306 (309)
378 PRK05439 pantothenate kinase; 94.7 0.25 5.5E-06 52.0 10.9 27 178-204 84-110 (311)
379 KOG3347 Predicted nucleotide k 94.7 0.047 1E-06 49.3 4.5 72 180-266 7-78 (176)
380 PRK09519 recA DNA recombinatio 94.7 0.16 3.5E-06 59.9 10.3 86 179-274 59-148 (790)
381 PF00910 RNA_helicase: RNA hel 94.7 0.024 5.2E-07 49.8 2.8 23 183-205 1-23 (107)
382 cd01129 PulE-GspE PulE/GspE Th 94.7 0.1 2.2E-06 54.1 7.9 105 160-281 62-166 (264)
383 KOG0729 26S proteasome regulat 94.7 0.084 1.8E-06 52.2 6.6 47 158-204 178-235 (435)
384 PRK04040 adenylate kinase; Pro 94.6 0.029 6.3E-07 54.9 3.5 24 181-204 3-26 (188)
385 PF00158 Sigma54_activat: Sigm 94.6 0.079 1.7E-06 50.8 6.4 60 159-223 1-60 (168)
386 KOG0652 26S proteasome regulat 94.6 0.46 9.9E-06 47.1 11.5 54 151-204 163-229 (424)
387 TIGR02655 circ_KaiC circadian 94.6 0.24 5.2E-06 56.6 11.3 99 168-274 251-363 (484)
388 COG3640 CooC CO dehydrogenase 94.6 0.071 1.5E-06 52.3 5.9 50 182-242 2-51 (255)
389 COG0714 MoxR-like ATPases [Gen 94.6 0.082 1.8E-06 57.2 7.3 66 157-234 24-89 (329)
390 PRK06217 hypothetical protein; 94.6 0.054 1.2E-06 53.0 5.4 23 182-204 3-25 (183)
391 PF03029 ATP_bind_1: Conserved 94.6 0.073 1.6E-06 54.2 6.4 21 185-205 1-21 (238)
392 KOG0731 AAA+-type ATPase conta 94.6 0.61 1.3E-05 54.4 14.3 176 157-361 311-521 (774)
393 PRK06002 fliI flagellum-specif 94.6 0.11 2.3E-06 57.4 8.0 89 179-275 164-265 (450)
394 TIGR03575 selen_PSTK_euk L-ser 94.6 0.15 3.2E-06 54.6 8.8 23 183-205 2-24 (340)
395 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.14 3.1E-06 51.2 8.5 26 179-204 33-58 (207)
396 cd02025 PanK Pantothenate kina 94.6 0.17 3.8E-06 50.9 9.0 23 182-204 1-23 (220)
397 PRK05973 replicative DNA helic 94.6 0.35 7.5E-06 48.9 11.1 49 179-234 63-111 (237)
398 cd03217 ABC_FeS_Assembly ABC-t 94.5 0.067 1.5E-06 53.2 6.0 25 179-203 25-49 (200)
399 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.026 5.6E-07 55.3 2.9 23 182-204 1-23 (183)
400 KOG0743 AAA+-type ATPase [Post 94.5 0.79 1.7E-05 49.8 14.0 147 181-368 236-413 (457)
401 COG0541 Ffh Signal recognition 94.5 3.3 7.1E-05 45.0 18.5 58 179-242 99-158 (451)
402 TIGR03498 FliI_clade3 flagella 94.5 0.092 2E-06 57.8 7.3 91 179-275 139-241 (418)
403 TIGR00554 panK_bact pantothena 94.5 0.26 5.6E-06 51.6 10.4 26 179-204 61-86 (290)
404 PRK08972 fliI flagellum-specif 94.5 0.088 1.9E-06 57.8 7.1 90 179-275 161-263 (444)
405 KOG3864 Uncharacterized conser 94.5 0.0044 9.6E-08 58.9 -2.5 65 749-824 123-190 (221)
406 PRK12597 F0F1 ATP synthase sub 94.4 0.12 2.5E-06 57.6 7.9 93 179-275 142-248 (461)
407 PRK15429 formate hydrogenlyase 94.4 0.08 1.7E-06 63.5 7.2 48 157-204 376-423 (686)
408 COG1428 Deoxynucleoside kinase 94.4 0.034 7.4E-07 53.8 3.2 25 180-204 4-28 (216)
409 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.037 8E-07 55.5 3.7 24 180-203 29-52 (213)
410 PF07724 AAA_2: AAA domain (Cd 94.4 0.028 6E-07 54.1 2.6 43 180-226 3-45 (171)
411 PF13481 AAA_25: AAA domain; P 94.4 0.16 3.4E-06 50.3 8.1 49 181-234 33-89 (193)
412 PRK00131 aroK shikimate kinase 94.3 0.04 8.7E-07 53.4 3.8 25 180-204 4-28 (175)
413 PF00560 LRR_1: Leucine Rich R 94.3 0.02 4.4E-07 33.7 0.9 21 561-582 1-21 (22)
414 COG0396 sufC Cysteine desulfur 94.3 0.25 5.4E-06 48.5 8.8 63 251-315 149-217 (251)
415 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.065 1.4E-06 56.5 5.2 48 157-204 61-112 (358)
416 PF13306 LRR_5: Leucine rich r 94.3 0.13 2.8E-06 46.8 6.8 115 512-633 10-128 (129)
417 PF03969 AFG1_ATPase: AFG1-lik 94.2 0.046 9.9E-07 59.2 4.2 76 179-274 61-137 (362)
418 PF12775 AAA_7: P-loop contain 94.2 0.073 1.6E-06 55.5 5.5 89 167-275 23-111 (272)
419 PRK05922 type III secretion sy 94.2 0.15 3.3E-06 56.1 8.1 90 179-275 156-258 (434)
420 PF00006 ATP-synt_ab: ATP synt 94.2 0.097 2.1E-06 52.1 6.1 89 180-275 15-116 (215)
421 cd01136 ATPase_flagellum-secre 94.2 0.21 4.5E-06 53.1 8.8 90 179-275 68-170 (326)
422 COG1936 Predicted nucleotide k 94.1 0.038 8.2E-07 51.6 2.9 20 182-201 2-21 (180)
423 PRK08149 ATP synthase SpaL; Va 94.1 0.16 3.6E-06 55.8 8.3 90 179-275 150-252 (428)
424 PRK06995 flhF flagellar biosyn 94.1 0.27 5.8E-06 55.1 10.1 60 180-242 256-316 (484)
425 cd02023 UMPK Uridine monophosp 94.1 0.035 7.5E-07 55.2 2.8 23 182-204 1-23 (198)
426 cd02024 NRK1 Nicotinamide ribo 94.1 0.037 8E-07 53.8 2.9 23 182-204 1-23 (187)
427 PRK00889 adenylylsulfate kinas 94.1 0.051 1.1E-06 52.8 3.9 26 179-204 3-28 (175)
428 PRK14721 flhF flagellar biosyn 94.1 0.35 7.6E-06 53.3 10.6 61 179-242 190-251 (420)
429 TIGR02322 phosphon_PhnN phosph 94.0 0.045 9.8E-07 53.4 3.5 24 181-204 2-25 (179)
430 PF01078 Mg_chelatase: Magnesi 94.0 0.084 1.8E-06 51.6 5.1 44 157-204 3-46 (206)
431 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.3 6.6E-06 50.6 9.7 40 179-223 35-74 (259)
432 PRK09280 F0F1 ATP synthase sub 94.0 0.32 7E-06 53.9 10.2 93 179-275 143-249 (463)
433 TIGR02902 spore_lonB ATP-depen 94.0 0.11 2.3E-06 60.0 6.8 45 158-204 66-110 (531)
434 COG0467 RAD55 RecA-superfamily 94.0 0.18 3.8E-06 52.6 8.0 55 178-240 21-75 (260)
435 PRK08927 fliI flagellum-specif 94.0 0.16 3.5E-06 56.0 7.8 90 179-275 157-259 (442)
436 PRK13949 shikimate kinase; Pro 94.0 0.045 9.7E-07 52.7 3.2 24 181-204 2-25 (169)
437 PRK14723 flhF flagellar biosyn 93.9 0.42 9E-06 56.4 11.5 87 180-274 185-273 (767)
438 cd02020 CMPK Cytidine monophos 93.9 0.043 9.3E-07 51.5 3.0 23 182-204 1-23 (147)
439 cd03250 ABCC_MRP_domain1 Domai 93.9 0.51 1.1E-05 47.1 10.9 26 179-204 30-55 (204)
440 KOG3864 Uncharacterized conser 93.9 0.009 2E-07 56.9 -1.7 68 715-789 121-191 (221)
441 COG2401 ABC-type ATPase fused 93.9 0.091 2E-06 55.7 5.3 136 180-315 409-581 (593)
442 COG0465 HflB ATP-dependent Zn 93.9 0.44 9.5E-06 54.4 11.1 48 157-204 150-207 (596)
443 cd00227 CPT Chloramphenicol (C 93.9 0.056 1.2E-06 52.5 3.7 24 181-204 3-26 (175)
444 PF06068 TIP49: TIP49 C-termin 93.9 0.094 2E-06 55.4 5.4 50 156-205 23-75 (398)
445 PRK14530 adenylate kinase; Pro 93.8 0.051 1.1E-06 54.8 3.5 24 181-204 4-27 (215)
446 PRK13407 bchI magnesium chelat 93.8 0.08 1.7E-06 56.6 5.1 46 157-204 8-53 (334)
447 PF03266 NTPase_1: NTPase; In 93.8 0.085 1.8E-06 50.5 4.8 23 183-205 2-24 (168)
448 PRK13947 shikimate kinase; Pro 93.8 0.049 1.1E-06 52.7 3.2 23 182-204 3-25 (171)
449 TIGR03305 alt_F1F0_F1_bet alte 93.8 0.14 2.9E-06 56.7 6.9 93 179-275 137-243 (449)
450 PRK10751 molybdopterin-guanine 93.8 0.064 1.4E-06 51.2 3.8 27 179-205 5-31 (173)
451 TIGR02030 BchI-ChlI magnesium 93.8 0.093 2E-06 56.3 5.4 46 157-204 4-49 (337)
452 cd01125 repA Hexameric Replica 93.8 0.37 8.1E-06 49.4 9.8 23 182-204 3-25 (239)
453 cd02021 GntK Gluconate kinase 93.7 0.048 1E-06 51.4 2.9 23 182-204 1-23 (150)
454 PF14532 Sigma54_activ_2: Sigm 93.7 0.044 9.6E-07 50.8 2.6 45 160-204 1-45 (138)
455 CHL00081 chlI Mg-protoporyphyr 93.7 0.083 1.8E-06 56.6 4.8 46 157-204 17-62 (350)
456 cd02028 UMPK_like Uridine mono 93.6 0.054 1.2E-06 52.7 3.1 23 182-204 1-23 (179)
457 TIGR01039 atpD ATP synthase, F 93.6 0.24 5.3E-06 54.7 8.4 93 179-275 142-248 (461)
458 PF13245 AAA_19: Part of AAA d 93.6 0.16 3.5E-06 41.2 5.3 25 180-204 10-34 (76)
459 COG2842 Uncharacterized ATPase 93.5 0.26 5.6E-06 50.5 7.8 106 157-276 72-177 (297)
460 TIGR01351 adk adenylate kinase 93.5 0.089 1.9E-06 52.8 4.6 22 183-204 2-23 (210)
461 TIGR00455 apsK adenylylsulfate 93.5 0.33 7.2E-06 47.5 8.6 26 179-204 17-42 (184)
462 cd01135 V_A-ATPase_B V/A-type 93.5 0.23 5E-06 51.0 7.5 95 180-275 69-177 (276)
463 cd01122 GP4d_helicase GP4d_hel 93.5 0.54 1.2E-05 49.3 10.7 53 179-237 29-81 (271)
464 PRK15453 phosphoribulokinase; 93.5 0.43 9.4E-06 49.1 9.3 26 179-204 4-29 (290)
465 COG2274 SunT ABC-type bacterio 93.4 0.48 1E-05 56.1 11.0 26 179-204 498-523 (709)
466 COG0003 ArsA Predicted ATPase 93.4 0.14 3E-06 54.2 6.0 49 180-233 2-50 (322)
467 PRK15064 ABC transporter ATP-b 93.4 0.38 8.2E-06 56.0 10.2 26 179-204 26-51 (530)
468 PRK09435 membrane ATPase/prote 93.4 0.22 4.8E-06 53.2 7.4 39 167-205 43-81 (332)
469 cd00464 SK Shikimate kinase (S 93.4 0.067 1.5E-06 50.6 3.3 22 183-204 2-23 (154)
470 COG0488 Uup ATPase components 93.4 0.27 5.9E-06 56.0 8.5 137 179-318 347-511 (530)
471 TIGR03263 guanyl_kin guanylate 93.4 0.064 1.4E-06 52.3 3.2 24 181-204 2-25 (180)
472 PLN02318 phosphoribulokinase/u 93.3 0.094 2E-06 59.3 4.7 35 170-204 55-89 (656)
473 PRK05800 cobU adenosylcobinami 93.3 0.27 5.9E-06 47.2 7.3 83 181-273 2-85 (170)
474 PTZ00185 ATPase alpha subunit; 93.3 0.34 7.3E-06 53.8 8.8 96 180-275 189-300 (574)
475 PRK03846 adenylylsulfate kinas 93.3 0.085 1.8E-06 52.4 4.0 26 179-204 23-48 (198)
476 TIGR00176 mobB molybdopterin-g 93.3 0.12 2.6E-06 48.8 4.8 24 182-205 1-24 (155)
477 KOG1532 GTPase XAB1, interacts 93.3 0.1 2.2E-06 52.1 4.2 61 179-242 18-87 (366)
478 COG0488 Uup ATPase components 93.3 0.27 5.8E-06 56.1 8.3 55 252-308 159-216 (530)
479 cd01130 VirB11-like_ATPase Typ 93.3 0.08 1.7E-06 51.9 3.7 93 180-281 25-117 (186)
480 cd01132 F1_ATPase_alpha F1 ATP 93.3 0.35 7.6E-06 49.7 8.4 90 180-276 69-173 (274)
481 PRK12339 2-phosphoglycerate ki 93.3 0.08 1.7E-06 52.2 3.6 25 180-204 3-27 (197)
482 PRK05342 clpX ATP-dependent pr 93.3 0.15 3.2E-06 56.4 6.1 49 156-204 70-132 (412)
483 PRK14527 adenylate kinase; Pro 93.2 0.083 1.8E-06 52.1 3.8 26 179-204 5-30 (191)
484 COG2019 AdkA Archaeal adenylat 93.2 0.078 1.7E-06 49.0 3.2 25 180-204 4-28 (189)
485 COG3854 SpoIIIAA ncharacterize 93.2 0.26 5.6E-06 48.1 6.8 120 169-301 128-252 (308)
486 PRK00300 gmk guanylate kinase; 93.2 0.081 1.8E-06 52.9 3.7 26 179-204 4-29 (205)
487 PF08477 Miro: Miro-like prote 93.2 0.078 1.7E-06 47.5 3.2 22 183-204 2-23 (119)
488 smart00534 MUTSac ATPase domai 93.2 0.04 8.6E-07 54.0 1.4 22 182-203 1-22 (185)
489 PRK05057 aroK shikimate kinase 93.2 0.087 1.9E-06 50.9 3.7 25 180-204 4-28 (172)
490 PRK11160 cysteine/glutathione 93.2 0.36 7.8E-06 56.7 9.6 26 179-204 365-390 (574)
491 PRK05917 DNA polymerase III su 93.2 1.7 3.8E-05 45.3 13.3 38 166-204 6-43 (290)
492 PRK07721 fliI flagellum-specif 93.1 0.47 1E-05 52.8 9.8 91 179-275 157-259 (438)
493 PRK05688 fliI flagellum-specif 93.1 0.28 6E-06 54.3 7.8 90 179-275 167-269 (451)
494 cd03243 ABC_MutS_homologs The 93.1 0.045 9.8E-07 54.6 1.7 23 181-203 30-52 (202)
495 TIGR03522 GldA_ABC_ATP gliding 93.1 0.23 5E-06 52.9 7.2 26 179-204 27-52 (301)
496 PF00625 Guanylate_kin: Guanyl 93.1 0.13 2.9E-06 50.2 5.0 36 180-220 2-37 (183)
497 TIGR03880 KaiC_arch_3 KaiC dom 93.1 0.59 1.3E-05 47.4 9.9 48 179-233 15-62 (224)
498 PRK09099 type III secretion sy 93.1 0.24 5.2E-06 54.8 7.4 91 179-275 162-264 (441)
499 cd00544 CobU Adenosylcobinamid 93.1 0.5 1.1E-05 45.3 8.6 79 183-273 2-82 (169)
500 PRK14738 gmk guanylate kinase; 93.1 0.084 1.8E-06 52.7 3.5 27 177-203 10-36 (206)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-98 Score=874.40 Aligned_cols=838 Identities=40% Similarity=0.656 Sum_probs=701.0
Q ss_pred HHHHHHHhhhcccchHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 002655 14 SFRSILSYVGGEAKYVWALQVNLDALQAELDKLIRTKDDLLNKVELVEQQQPRARRTNQVKGWLQRVQETVTKVVDLQNV 93 (896)
Q Consensus 14 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~~~Wl~~l~~~~~~~~d~~d~ 93 (896)
.++++.+.+.++...+.+.++++..|++++..|+.+++| |+.++ .....+..|.+.+++++|+++|+++.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~---~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKR---DDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888899999999999999999999999999887 44443 45567889999999999999999998
Q ss_pred hhhhhc----------------cccccCcCCcCcchhhhhhHHHHHHHHHHHHHHhhcCCcceeec-cCCchhhhhhccc
Q 002655 94 RDQELD----------------RLCLGGFCSKDLASSYYFGKKVVTLTEQVILLKNERGEIKDIAE-MVPEDAAVELALE 156 (896)
Q Consensus 94 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 156 (896)
|..+.. +-|..++|......-+.+++++.++.++++.+.. ++.|..++. ..+......+|..
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~-~~~~~~~~~~~~~~~~~e~~~~~ 156 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGS-KGVFEVVGESLDPREKVETRPIQ 156 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcc-ccceecccccccchhhcccCCCC
Confidence 865422 1233355666667778888999999999998876 556666654 2333344444544
Q ss_pred ccc-cchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTV-VGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~-vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
+.. ||.+..++++.+.|.++ +..+++|+||||+||||||+.++|+.. +++.+||.++||+||+.++...++.+|+
T Consensus 157 ~~~~VG~e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N~~~--~v~~~Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 157 SESDVGLETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFNKFD--EVGNHFDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred ccccccHHHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhcccc--hhcccCceEEEEEEcccccHHhHHHHHH
Confidence 444 99999999999999988 459999999999999999999999984 3889999999999999999999999999
Q ss_pred HHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhhhcc-CCCCceE
Q 002655 236 KRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCGS-MEADEKI 314 (896)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~-~~~~~~~ 314 (896)
+.++.....+.....++.+..|.+.|+++||+|||||||+..+|+.++.++|...+||+|++|||++.||.. +++...+
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 999987766666667899999999999999999999999999999999999999899999999999999998 8888999
Q ss_pred EeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHhcCC-CCcCCC
Q 002655 315 EVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVLSTS-PEKFSG 393 (896)
Q Consensus 315 ~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~~~~~w~~~~~~l~~~-~~~~~~ 393 (896)
+++.|+++|||+||++.++.......+.++++|++++++|+|+|||++++|+.|+.+.+..+|+++.+.+.+. ..+.++
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~ 392 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSG 392 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCc
Confidence 9999999999999999999876566667999999999999999999999999999999999999999999887 566677
Q ss_pred ChHHHHhHHhhccCCCCchhhhHHHhhhcCCCCCcccchhhHHHHHHHcCCcc-------hhhhhhHHHHHHHHcccccc
Q 002655 394 MEENVFARLKFSYDSLPNYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVD-------AFDEGYTIIGDLLRACLLEE 466 (896)
Q Consensus 394 ~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~-------~~~~~~~~l~~L~~~~Ll~~ 466 (896)
+.+.++.+|++||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+. .++.|+.|+++|++++|+..
T Consensus 393 ~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 393 MEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred hhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 788999999999999995 8999999999999999999999999999999997 47899999999999999998
Q ss_pred cc----cCeEEehHHHHHHHHHHHhhcccccccEEEecCcccccCCcccCcccceeeeccccCccccCCCCCCCCCcEEE
Q 002655 467 VN----DNHVKMHDVIRDMALWIACKIDKEEENFLVHAGALLTEAPKIKDWEGFKRISLMENNITSLSAIPNCPHLRTLL 542 (896)
Q Consensus 467 ~~----~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~ 542 (896)
.. ...|.|||+||++|.+++++.+.++++.++..+......|....|...|++++.+|.+..++.-..+++|++|.
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLl 551 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLL 551 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEE
Confidence 63 37899999999999999999888888888888777778889999999999999999999998888999999999
Q ss_pred cccCc--cccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCccccchhhhcCCCCcEEecccc-cc
Q 002655 543 LYRNR--ISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYV-YL 619 (896)
Q Consensus 543 l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~-~l 619 (896)
+.+|. +..++..||..|+.|++|||++|..+.++|++|+.|.+||||++++|.++.+|.++++|++|.+|++..+ .+
T Consensus 552 l~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 552 LQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred EeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc
Confidence 99997 7888889999999999999999999999999999999999999999999999999999999999999998 55
Q ss_pred ccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhhhHhhhhccccccceeEE
Q 002655 620 NRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFETFLTFQKLLSCTESL 699 (896)
Q Consensus 620 ~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L 699 (896)
..+ ++.+..|++||+|.+..-. . ..+...+.++.+|++|+.++++..+....+.+.....+.+..+.+
T Consensus 632 ~~~-~~i~~~L~~Lr~L~l~~s~-~----------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 632 ESI-PGILLELQSLRVLRLPRSA-L----------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred ccc-cchhhhcccccEEEeeccc-c----------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhh
Confidence 555 4546779999999998732 1 123467889999999999999776653344444444444455555
Q ss_pred EecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccccCcccEEeeccCCCCCCCcccccCCCCcEE
Q 002655 700 ELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTWLVFAPNLKNI 779 (896)
Q Consensus 700 ~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L 779 (896)
.+..+.. .....++..+.+|+.|.|.+|...+....+....... ..|+++.++.+.+|...+.+.|....|+|+.|
T Consensus 700 ~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~--~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 700 SIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVL--LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSL 775 (889)
T ss_pred hhccccc--ceeecccccccCcceEEEEcCCCchhhcccccccchh--hhHHHHHHHHhhccccccccchhhccCcccEE
Confidence 5433222 1222357778999999999999977444443321111 13778999999999999999998899999999
Q ss_pred eEecCccccccccCCcCccccccccccccCccccee-eccCCcccccccCCCCCCCCccEEEecCCCCCCCCCCCCCC--
Q 002655 780 DVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFL-CLKDLENLESIYFDPLPFPQLKEIEVTGCPKLKKLPLDSTR-- 856 (896)
Q Consensus 780 ~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L-~l~~~~~L~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~-- 856 (896)
.+..|..++++++...... ........|+++..+ .+.+.+.+.++...+..+++|+.+.+..||+++.+|.....
T Consensus 776 ~l~~~~~~e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i 853 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTI 853 (889)
T ss_pred EEecccccccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccce
Confidence 9999999999876432211 111123457777777 68888888888888888899999999999999999987655
Q ss_pred CCC-cceEEEcchhhhhhcccCCccccccc
Q 002655 857 AMG-HKIVVKGNIEWWVELQWEDRVTQRVF 885 (896)
Q Consensus 857 ~~l-~~l~I~~~~~~~~~l~~~~~~~~~~~ 885 (896)
... ..+....+.+|.+.++|+++..+..+
T Consensus 854 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 854 VGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eccccceeecCCccceeeEEehhhhhhhhc
Confidence 222 23333456678999999999888665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-64 Score=624.72 Aligned_cols=639 Identities=19% Similarity=0.265 Sum_probs=439.5
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEe---CCC---------
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVV---SRE--------- 224 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~---s~~--------- 224 (896)
..+|||+++++++..+|..+..++++|+||||||+||||||+++|+... ..|++.+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~-----~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS-----RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh-----hcCCeEEEeeccccccchhhcccccc
Confidence 4689999999999999876666899999999999999999999999863 78888888742 111
Q ss_pred --CC-HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCC
Q 002655 225 --PK-LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRS 301 (896)
Q Consensus 225 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~ 301 (896)
++ ...++..++.++..... ..... ...+++.++++|+||||||||+..+|+.+.....+.++||+||||||+
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 01 12334444444321110 01111 145678899999999999999999999887766777899999999999
Q ss_pred hhhhccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHH
Q 002655 302 LDVCGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYAT 381 (896)
Q Consensus 302 ~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~~~~~w~~~~ 381 (896)
++++..++..++|+++.|++++||+||++.|++.. .++.++.+++++|+++|+|+|||++++|++|+. ++..+|+.++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l 411 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDML 411 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHH
Confidence 99998777888999999999999999999998765 345568899999999999999999999999997 5789999999
Q ss_pred HHhcCCCCcCCCChHHHHhHHhhccCCCCchhhhHHHhhhcCCCCCcccchhhHHHHHHHcCCcchhhhhhHHHHHHHHc
Q 002655 382 KVLSTSPEKFSGMEENVFARLKFSYDSLPNYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEGYTIIGDLLRA 461 (896)
Q Consensus 382 ~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~l~~L~~~ 461 (896)
+.++... +.++..+|++||++|+++..|.||+++|+||.+..++ .+..|.+.+... +...++.|+++
T Consensus 412 ~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~----~~~~l~~L~~k 478 (1153)
T PLN03210 412 PRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD----VNIGLKNLVDK 478 (1153)
T ss_pred HHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC----chhChHHHHhc
Confidence 9987643 3489999999999998745799999999999887653 467788876553 23348999999
Q ss_pred ccccccccCeEEehHHHHHHHHHHHhhccc--ccccEEEecCccc---------c----------cC-------CcccCc
Q 002655 462 CLLEEVNDNHVKMHDVIRDMALWIACKIDK--EEENFLVHAGALL---------T----------EA-------PKIKDW 513 (896)
Q Consensus 462 ~Ll~~~~~~~~~mHdlv~~~a~~~~~~~~~--~~~~~~~~~~~~~---------~----------~~-------~~~~~~ 513 (896)
||++.. .+.+.|||++|+||+++++++.. .+..+.+...... . .. ..+..+
T Consensus 479 sLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m 557 (1153)
T PLN03210 479 SLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGM 557 (1153)
T ss_pred CCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcC
Confidence 999875 56899999999999999976531 1222332210000 0 00 001112
Q ss_pred c-------------------------------cceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCc
Q 002655 514 E-------------------------------GFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSL 562 (896)
Q Consensus 514 ~-------------------------------~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L 562 (896)
. +++.|.+.++.+..+|......+|+.|++.+|.+..++.+ +..+++|
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~L 636 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGL 636 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCC
Confidence 2 3445555555555555544566777777777777666665 4667777
Q ss_pred cEEecccccccccCCccccCCCcCcEEeccCC-CccccchhhhcCCCCcEEecccc-ccccccccccCCCCccceeeccC
Q 002655 563 KVLNLGFNIFLNKLPSGLSSLISLEHLDLSFT-VIRELPEEMKALVNLRYLNLEYV-YLNRLPLQLLCNFTKLQALRMLG 640 (896)
Q Consensus 563 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~i~~l~~L~~L~l~~ 640 (896)
++|+|++|..+..+| .++.+++|++|++++| .+..+|..++++++|+.|++++| .+..+|.. + ++++|+.|.+.+
T Consensus 637 k~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 637 RNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSG 713 (1153)
T ss_pred CEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCC
Confidence 777777765666666 4667777777777776 56677777777777777777777 67777764 2 677777777777
Q ss_pred ccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCC------cccccc
Q 002655 641 CSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPM------SLNVLP 714 (896)
Q Consensus 641 c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~ 714 (896)
|..+... .. ..++|+.|++..+....++... .+++|..|.+.++.... .+....
T Consensus 714 c~~L~~~--------------p~--~~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 714 CSRLKSF--------------PD--ISTNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCCcccc--------------cc--ccCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhh
Confidence 7543321 00 1234444444433322222111 13445555554432110 000001
Q ss_pred hhhccccceEEeccCCceeeeeccccccccccccccCcccEEeeccCCCCCCCcccccCCCCcEEeEecCccccccccCC
Q 002655 715 LAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTWLVFAPNLKNIDVQNCNNMEEIISPG 794 (896)
Q Consensus 715 l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~ 794 (896)
...+++|+.|.+++|....-.+.++. .+++|+.|+|++|.+++.+|....+++|+.|++++|+.++.++...
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~--------~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQ--------NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhh--------CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence 12235677777777755442122222 5777888888888777777765567778888888877776654311
Q ss_pred --------cCccccccccccccCcccceeeccCCcccccccCCCCCCCCccEEEecCCCCCCCCCCC
Q 002655 795 --------KLSEVSEIKERQNFLAELKFLCLKDLENLESIYFDPLPFPQLKEIEVTGCPKLKKLPLD 853 (896)
Q Consensus 795 --------~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 853 (896)
....++.++.....+++|+.|.+++|++|+.++.....+++|+.+++.+|++|+.++..
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 00112233444566788888888888888888877777888888888888888877653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-44 Score=384.36 Aligned_cols=282 Identities=35% Similarity=0.639 Sum_probs=232.5
Q ss_pred hhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 002655 162 QESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLS 241 (896)
Q Consensus 162 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 241 (896)
||.++++|.+.|.....+.++|+|+||||+||||||+.++++.. .+.+|+.++|+.++...+...++..|+.+++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~---~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR---IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH---HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc---ccccccccccccccccccccccccccccccccc
Confidence 78999999999998556899999999999999999999999863 679999999999999999999999999999887
Q ss_pred cccc-cccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhhhccCCC-CceEEeccC
Q 002655 242 AESW-MDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCGSMEA-DEKIEVKYL 319 (896)
Q Consensus 242 ~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l~~L 319 (896)
.... ...+.++....+.+.|.++++||||||||+...|+.+...++....|++||||||+..++..++. ...|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5433 45678889999999999999999999999999998888888777789999999999999876654 678999999
Q ss_pred ChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHhcCCCCcCCCChHHHH
Q 002655 320 VHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVLSTSPEKFSGMEENVF 399 (896)
Q Consensus 320 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~i~ 399 (896)
+++||++||.+.++.......+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999987654223445567899999999999999999999997666789999999888776544444557899
Q ss_pred hHHhhccCCCCchhhhHHHhhhcCCCCCcccchhhHHHHHHHcCCcch
Q 002655 400 ARLKFSYDSLPNYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDA 447 (896)
Q Consensus 400 ~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~ 447 (896)
.++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|++..
T Consensus 238 ~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999 89999999999999999999999999999999864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=4.4e-20 Score=230.76 Aligned_cols=332 Identities=20% Similarity=0.196 Sum_probs=202.3
Q ss_pred CcccceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEec
Q 002655 512 DWEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDL 591 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l 591 (896)
.++++++|++++|.+....+...+++|++|++++|.+....+..++++++|++|+|++|.....+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 45567777777776654434456777777777777765444444677777788887777444567777777777788877
Q ss_pred cCCCcc-ccchhhhcCCCCcEEeccccccc-cccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcC
Q 002655 592 SFTVIR-ELPEEMKALVNLRYLNLEYVYLN-RLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLEN 669 (896)
Q Consensus 592 ~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~ 669 (896)
++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|++|++.+|.- .. .....+.++++
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l-~~------------~~p~~l~~l~~ 261 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL-TG------------PIPSSLGNLKN 261 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee-cc------------ccChhHhCCCC
Confidence 777665 56777777777788877777655 34443 67777777777777521 11 12334556666
Q ss_pred CceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccc
Q 002655 670 LDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRG 749 (896)
Q Consensus 670 L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~ 749 (896)
|+.|.+..+..... .......+++|+.|++.++......+ ..+..+++|+.|++++|......+..+. .
T Consensus 262 L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------~ 330 (968)
T PLN00113 262 LQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALT--------S 330 (968)
T ss_pred CCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhHh--------c
Confidence 66666654433210 11112234577777777654322222 2355667788888877766543333332 5
Q ss_pred cCcccEEeeccCCCCCCCc-ccccCCCCcEEeEecCccccccccC-CcCcccc-----------ccccccccCcccceee
Q 002655 750 FRSLHTVFISDCSRLKELT-WLVFAPNLKNIDVQNCNNMEEIISP-GKLSEVS-----------EIKERQNFLAELKFLC 816 (896)
Q Consensus 750 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~-~~~~~l~-----------~~~~~~~~~~~L~~L~ 816 (896)
+++|+.|+|++|.-...+| .++.+++|+.|++++|.....++.. .....++ .++.....+++|+.|.
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 7778888888875443444 4677788888888775432222210 0000111 1122244577888888
Q ss_pred ccCCcccccccCCCCCCCCccEEEecCCCCCCCCCCCCC-CCCCcceEEEcch
Q 002655 817 LKDLENLESIYFDPLPFPQLKEIEVTGCPKLKKLPLDST-RAMGHKIVVKGNI 868 (896)
Q Consensus 817 l~~~~~L~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~-~~~l~~l~I~~~~ 868 (896)
+++|.-...++.....+++|+.|+++++.--..+|.... .++|+.+.+.+|.
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 888765555565666788888888888754444443322 2678888877654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.2e-22 Score=212.95 Aligned_cols=328 Identities=21% Similarity=0.310 Sum_probs=235.7
Q ss_pred cEEEecCcccccCC-cccCcccceeeeccccCcccc-CCCCCCCCCcEEEcccCccc--cccchhhccCCCccEEecccc
Q 002655 495 NFLVHAGALLTEAP-KIKDWEGFKRISLMENNITSL-SAIPNCPHLRTLLLYRNRIS--MITDGFFQFMPSLKVLNLGFN 570 (896)
Q Consensus 495 ~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~ 570 (896)
.|+......+..+| .+..+.++++|++..|++..+ ..++.++.||++.+..|++. .+|+.+| .+..|.+||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 34444444444444 245667899999999988776 44889999999999999854 6888855 5999999999999
Q ss_pred cccccCCccccCCCcCcEEeccCCCccccchhh-hcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCcc
Q 002655 571 IFLNKLPSGLSSLISLEHLDLSFTVIRELPEEM-KALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEE 649 (896)
Q Consensus 571 ~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e 649 (896)
.+.+.|..+..-+++-+|+|++|+|..+|..+ -+|+-|-+||+++|.+..+|+. +..|.+|++|.++++.-
T Consensus 114 -qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL------ 185 (1255)
T KOG0444|consen 114 -QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPL------ 185 (1255)
T ss_pred -hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChh------
Confidence 89999999999999999999999999999864 5789999999999999999998 89999999999988421
Q ss_pred ccccccCcchhhhhhccCcCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccC
Q 002655 650 DRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNC 729 (896)
Q Consensus 650 ~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~ 729 (896)
..+.+..|++++.|..|.++...- ....+...+..+.+|..++++.++ +..++. .+-++++|+.|++++|
T Consensus 186 -------~hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPe-cly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 186 -------NHFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-LPIVPE-CLYKLRNLRRLNLSGN 255 (1255)
T ss_pred -------hHHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-CCcchH-HHhhhhhhheeccCcC
Confidence 135677788888888877764332 233333444445677777776543 222322 3556789999999999
Q ss_pred CceeeeeccccccccccccccCcccEEeeccCCCCCCCcc-cccCCCCcEEeEecCccc--ccccc-CCcCccc------
Q 002655 730 AFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTW-LVFAPNLKNIDVQNCNNM--EEIIS-PGKLSEV------ 799 (896)
Q Consensus 730 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l--~~l~~-~~~~~~l------ 799 (896)
.+.++.... ....+|++|+|+.+ .++.+|. +..|++|+.|.+.+ +++ +.+|. .++++.+
T Consensus 256 ~iteL~~~~---------~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 256 KITELNMTE---------GEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred ceeeeeccH---------HHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhh
Confidence 988854322 23467777777775 5666663 66777777776655 222 22221 1122211
Q ss_pred ----cccccccccCcccceeeccCCcccccccCCCCCCCCccEEEecCCCCCCCCCCC
Q 002655 800 ----SEIKERQNFLAELKFLCLKDLENLESIYFDPLPFPQLKEIEVTGCPKLKKLPLD 853 (896)
Q Consensus 800 ----~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 853 (896)
+-.+...+.+++|+.|.|+ |..|-.+|....-+|-|+.|++...|+|..-|-.
T Consensus 325 nN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 325 NNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 1223456778889998884 4678888888888899999999999999866653
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=4e-19 Score=221.79 Aligned_cols=314 Identities=21% Similarity=0.260 Sum_probs=201.1
Q ss_pred cccccCCcccCcccceeeeccccCccccCC-CCCCCCCcEEEcccCc-cccccchhhccCCCccEEecccccccccCCcc
Q 002655 502 ALLTEAPKIKDWEGFKRISLMENNITSLSA-IPNCPHLRTLLLYRNR-ISMITDGFFQFMPSLKVLNLGFNIFLNKLPSG 579 (896)
Q Consensus 502 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~ 579 (896)
......|..-...+++.|++.++.+..++. +..+++|+.|+++++. +..+|. +..+++|+.|+|++|..+..+|.+
T Consensus 599 ~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 599 YPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchh
Confidence 334455554556789999999999888754 6789999999999876 666664 778999999999999889999999
Q ss_pred ccCCCcCcEEeccCC-CccccchhhhcCCCCcEEecccc-ccccccccccCCCCccceeeccCccCCCCCccccccccCc
Q 002655 580 LSSLISLEHLDLSFT-VIRELPEEMKALVNLRYLNLEYV-YLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDA 657 (896)
Q Consensus 580 ~~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~ 657 (896)
++++.+|++|++++| .++.+|..+ ++++|++|++++| .+..+|. + .++|+.|++.++. +...
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~--~~nL~~L~L~~n~-i~~l---------- 740 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--I--STNISWLDLDETA-IEEF---------- 740 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--c--cCCcCeeecCCCc-cccc----------
Confidence 999999999999997 788999876 7999999999999 6777764 2 4678888887742 2110
Q ss_pred chhhhhhccCcCCceeEEEecchhhh----Hhhh-hccccccceeEEEecccCCCCcccccchhhccccceEEeccCCce
Q 002655 658 EPFMKELLCLENLDLLSFTFDSWHAF----ETFL-TFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFE 732 (896)
Q Consensus 658 ~~~l~~L~~L~~L~~l~i~~~~~~~~----~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 732 (896)
+.. ..+++|..|.+.......+ .... ......++|+.|.+.++.....++. .+..+++|+.|++++|...
T Consensus 741 P~~----~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 741 PSN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccc----ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCc
Confidence 000 1223333332221000000 0000 0001123555565555544333332 3445556666666655443
Q ss_pred eeeecccc-------------ccccccccccCcccEEeeccCCCCCCCc-ccccCCCCcEEeEecCccccccccCCcCcc
Q 002655 733 ELKIENAV-------------EIQNLVQRGFRSLHTVFISDCSRLKELT-WLVFAPNLKNIDVQNCNNMEEIISPGKLSE 798 (896)
Q Consensus 733 ~l~~~~~~-------------~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~ 798 (896)
+..+.... ....++ ....+|+.|+|+++ .++.+| ++..+++|+.|+|++|++++.++.
T Consensus 816 ~~LP~~~~L~sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~------ 887 (1153)
T PLN03210 816 ETLPTGINLESLESLDLSGCSRLRTFP-DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL------ 887 (1153)
T ss_pred CeeCCCCCccccCEEECCCCCcccccc-ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc------
Confidence 31111100 000000 01245555555554 445555 467788999999999998888754
Q ss_pred ccccccccccCcccceeeccCCcccccccCCC-------------CCCCCccEEEecCCCCCCCCCC
Q 002655 799 VSEIKERQNFLAELKFLCLKDLENLESIYFDP-------------LPFPQLKEIEVTGCPKLKKLPL 852 (896)
Q Consensus 799 l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~-------------~~~~~L~~L~i~~c~~L~~lp~ 852 (896)
....+++|+.|.+++|++|..++... ..+|+...+.+.+|.+|..-+.
T Consensus 888 ------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 888 ------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred ------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence 25578999999999999998765422 2355566778889988876554
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=2e-19 Score=224.75 Aligned_cols=327 Identities=21% Similarity=0.235 Sum_probs=156.0
Q ss_pred cCcccceeeeccccCccc-cC-CCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcE
Q 002655 511 KDWEGFKRISLMENNITS-LS-AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEH 588 (896)
Q Consensus 511 ~~~~~l~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 588 (896)
..+++++.|++.+|.+.. +| .+.++++|++|++++|.+....+..+.++++|++|+|++|.....+|..++++++|++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 344455666665555432 22 2455566666666665544333333555666666666655333355555666666666
Q ss_pred EeccCCCcc-ccchhhhcCCCCcEEecccccccc-ccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhcc
Q 002655 589 LDLSFTVIR-ELPEEMKALVNLRYLNLEYVYLNR-LPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLC 666 (896)
Q Consensus 589 L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~~-lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~ 666 (896)
|++++|.+. .+|..++++++|++|++++|.+.. +|.. +.++++|++|++++|. +.. .....+.+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~------------~~p~~~~~ 306 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNS-LSG------------EIPELVIQ 306 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCe-ecc------------CCChhHcC
Confidence 666665554 455556666666666666554432 3332 5555666666665542 110 11223344
Q ss_pred CcCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccc---
Q 002655 667 LENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQ--- 743 (896)
Q Consensus 667 L~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~--- 743 (896)
+++|+.+.+..+..... .......+++|+.|.+.++......+ ..+..+++|+.|++++|......+.++....
T Consensus 307 l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 307 LQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 55555555543332211 11112224566666666554322222 1344556666666666655432222221000
Q ss_pred -----------ccc--ccccCcccEEeeccCCCCCCCc-ccccCCCCcEEeEecCccccccccCCcCccccccccccccC
Q 002655 744 -----------NLV--QRGFRSLHTVFISDCSRLKELT-WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFL 809 (896)
Q Consensus 744 -----------~~~--~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~ 809 (896)
..+ ...+++|+.|++++|.-...+| .+..+++|+.|++++|. +...+. .....+
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l 451 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN-LQGRIN-----------SRKWDM 451 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc-ccCccC-----------hhhccC
Confidence 000 0123444444444443221222 23444444444444432 211111 113356
Q ss_pred cccceeeccCCcccccccCCCCCCCCccEEEecCCCCCCCCCCCCCC-CCCcceEEEcc
Q 002655 810 AELKFLCLKDLENLESIYFDPLPFPQLKEIEVTGCPKLKKLPLDSTR-AMGHKIVVKGN 867 (896)
Q Consensus 810 ~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~-~~l~~l~I~~~ 867 (896)
++|+.|.+++|.-...++.. ...++|+.|++++|.-...+|..... ++|+.+++.+|
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 77777777776544444432 23467777777777544455543322 56666666554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=8.3e-20 Score=192.68 Aligned_cols=319 Identities=19% Similarity=0.251 Sum_probs=167.8
Q ss_pred CcccceeeeccccCccccCCCCCCC-CCcEEEcccCccccccchhhccCCCccEEecccccccccCCc-cccCCCcCcEE
Q 002655 512 DWEGFKRISLMENNITSLSAIPNCP-HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPS-GLSSLISLEHL 589 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L 589 (896)
++++++.+++..|.+..+|.+.... +|..|+|.+|.++.+....+..++.||.||||.| .+.++|. ++..=.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEE
Confidence 4455666666666666666654433 3666666666666665555666666666666666 5555542 34444566666
Q ss_pred eccCCCccccch-hhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhcc--
Q 002655 590 DLSFTVIRELPE-EMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLC-- 666 (896)
Q Consensus 590 ~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~-- 666 (896)
+|++|.|+.+-. .+..|.+|-+|.|+.|+++.+|..++.+|++|+.|++..+ .+... | ...+.+|.+
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~iriv-e--------~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIV-E--------GLTFQGLPSLQ 248 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeee-h--------hhhhcCchhhh
Confidence 666666665533 3455666666666666666666666666666666666542 11110 0 011122222
Q ss_pred -------------------CcCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEec
Q 002655 667 -------------------LENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQ 727 (896)
Q Consensus 667 -------------------L~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~ 727 (896)
+.+++.+++..+....+.. ..+-.++.|+.|+++.+. ...+....++.++.|+.|+++
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhh-hheeecchhhhcccceeEecc
Confidence 2333333333333322221 111123445555554332 222223344445666666666
Q ss_pred cCCceeeeeccccccccccccccCcccEEeeccCCCCCCCc--ccccCCCCcEEeEecCccccccccCCcCccccccccc
Q 002655 728 NCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELT--WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKER 805 (896)
Q Consensus 728 ~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~ 805 (896)
.|.+.+++...+. .+..|+.|.|+++ ++..+. .+.++.+|++|+|++ +.+.-.+.. -...
T Consensus 326 ~N~i~~l~~~sf~--------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~-N~ls~~IED--------aa~~ 387 (873)
T KOG4194|consen 326 SNRITRLDEGSFR--------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRS-NELSWCIED--------AAVA 387 (873)
T ss_pred ccccccCChhHHH--------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcC-CeEEEEEec--------chhh
Confidence 6666555544443 4556666666654 444443 245566666666665 333333221 1122
Q ss_pred cccCcccceeeccCCcccccccC-CCCCCCCccEEEecCCCCCCCCCCC-CCCCCCcceEE
Q 002655 806 QNFLAELKFLCLKDLENLESIYF-DPLPFPQLKEIEVTGCPKLKKLPLD-STRAMGHKIVV 864 (896)
Q Consensus 806 ~~~~~~L~~L~l~~~~~L~~l~~-~~~~~~~L~~L~i~~c~~L~~lp~~-~~~~~l~~l~I 864 (896)
..++++|+.|.+.+ .+++.++. ....++.||.|++.+.+ +.++-.. .....|+++.+
T Consensus 388 f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVM 446 (873)
T ss_pred hccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhh
Confidence 45678888888877 56777765 35567888888887754 4444332 22244555444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=8.4e-20 Score=192.60 Aligned_cols=289 Identities=22% Similarity=0.302 Sum_probs=181.1
Q ss_pred cccceeeeccccCccccC--CCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCC-ccccCCCcCcEE
Q 002655 513 WEGFKRISLMENNITSLS--AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLP-SGLSSLISLEHL 589 (896)
Q Consensus 513 ~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L 589 (896)
+..+|.++++.|.+.+++ .++.-.++..|+|++|+++.+..+.|.++.+|-.|.|++| .++.+| .+|.+|++|+.|
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESL 226 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhh
Confidence 344555555555555542 3455555666666666666555555666666666666666 455554 344556666666
Q ss_pred eccCCCcccc-chhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCc
Q 002655 590 DLSFTVIREL-PEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLE 668 (896)
Q Consensus 590 ~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~ 668 (896)
+|..|.|+.. ...+..|.+|+.|.+..|.+..+..+++..|.++++|++..+ ++.. -.-+.|-+|+
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~------------vn~g~lfgLt 293 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQA------------VNEGWLFGLT 293 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhh------------hhcccccccc
Confidence 6666655544 334555666666666666666666666666666666666652 2211 1223455677
Q ss_pred CCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeecccccccccccc
Q 002655 669 NLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQR 748 (896)
Q Consensus 669 ~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~ 748 (896)
.|+.|+++++....+. .+.-....+|+.|+++.+. .+.++..++..+..|+.|.++.|.+..+.-..+.
T Consensus 294 ~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-------- 362 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-------- 362 (873)
T ss_pred hhhhhccchhhhheee--cchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHH--------
Confidence 7888888777655433 1222345688999988754 4556666788899999999999988765333332
Q ss_pred ccCcccEEeeccCCCCC----CCc-ccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCccc
Q 002655 749 GFRSLHTVFISDCSRLK----ELT-WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENL 823 (896)
Q Consensus 749 ~l~~L~~L~L~~c~~l~----~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L 823 (896)
.+++|++|+|+++. +. +-. .+.+|++|+.|.+.+ ++++.++. ....+|+.|+.|+|-+. -+
T Consensus 363 ~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-----------rAfsgl~~LE~LdL~~N-ai 428 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-----------RAFSGLEALEHLDLGDN-AI 428 (873)
T ss_pred HhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecC-ceeeecch-----------hhhccCcccceecCCCC-cc
Confidence 68899999998753 22 211 245799999999999 78888876 23678999999999874 45
Q ss_pred ccccCCC-CCCCCccEEEe
Q 002655 824 ESIYFDP-LPFPQLKEIEV 841 (896)
Q Consensus 824 ~~l~~~~-~~~~~L~~L~i 841 (896)
.++.... ..+ .|++|.+
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eeecccccccc-hhhhhhh
Confidence 5554332 222 4555544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=2e-20 Score=198.18 Aligned_cols=289 Identities=21% Similarity=0.259 Sum_probs=175.6
Q ss_pred CcccceeeeccccCccc--cC-CCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCcc-ccCCCcCc
Q 002655 512 DWEGFKRISLMENNITS--LS-AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSG-LSSLISLE 587 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~--l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~ 587 (896)
.++.+|.+.+..|+++. +| .+..+..|.+|+|+.|.++..|.. +...+++-+|+||+| .|+.+|.+ +-+|..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHh
Confidence 34456666666666543 33 367788888888888888888877 677888888888888 78888866 34677888
Q ss_pred EEeccCCCccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccC
Q 002655 588 HLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCL 667 (896)
Q Consensus 588 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L 667 (896)
+|||++|.+..||+.+..|.+|++|++++|.+..+....+..|++|+.|.+++...-. ...+..+..|
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------~N~Ptsld~l 221 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------DNIPTSLDDL 221 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh------------hcCCCchhhh
Confidence 8888888888888888888888888888885544333334556777777777642211 1233344555
Q ss_pred cCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccc
Q 002655 668 ENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQ 747 (896)
Q Consensus 668 ~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 747 (896)
.+|..++++.++...++.-. -.+.+|+.|.++++.. +.+.. ......+|++|+++.|....++...+
T Consensus 222 ~NL~dvDlS~N~Lp~vPecl---y~l~~LrrLNLS~N~i-teL~~-~~~~W~~lEtLNlSrNQLt~LP~avc-------- 288 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECL---YKLRNLRRLNLSGNKI-TELNM-TEGEWENLETLNLSRNQLTVLPDAVC-------- 288 (1255)
T ss_pred hhhhhccccccCCCcchHHH---hhhhhhheeccCcCce-eeeec-cHHHHhhhhhhccccchhccchHHHh--------
Confidence 56666666655544433322 2244667777665431 22211 23345677777777776665432221
Q ss_pred cccCcccEEeeccCC------------------------CCCCCc-ccccCCCCcEEeEecCccccccccCCcCcccccc
Q 002655 748 RGFRSLHTVFISDCS------------------------RLKELT-WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEI 802 (896)
Q Consensus 748 ~~l~~L~~L~L~~c~------------------------~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~ 802 (896)
.+++|++|.+.+++ +++-+| .+..+++|+.|.|+. +.+-.+
T Consensus 289 -KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTL------------ 354 (1255)
T KOG0444|consen 289 -KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITL------------ 354 (1255)
T ss_pred -hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeec------------
Confidence 24444444444432 333333 244445555555533 333333
Q ss_pred ccccccCcccceeeccCCcccccccCCCCCCCCccEEEe
Q 002655 803 KERQNFLAELKFLCLKDLENLESIYFDPLPFPQLKEIEV 841 (896)
Q Consensus 803 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i 841 (896)
+..+..+|.|+.|++...|+|---|.....-.+|+--+|
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 334677999999999999999765544333345554443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=1.3e-17 Score=168.89 Aligned_cols=312 Identities=23% Similarity=0.292 Sum_probs=187.5
Q ss_pred CcccCcccceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCc
Q 002655 508 PKIKDWEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLE 587 (896)
Q Consensus 508 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~ 587 (896)
+..+.+.++..+.+..|.+..+|.|+.|+.|..|.+..|.++.+|.....++++|.+|||..| .+++.|..++.|.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence 456777888999999999999999999999999999999999999998889999999999999 8999999999999999
Q ss_pred EEeccCCCccccchhhhcCCCCcEEeccccccccccccccCCCCc--cceeec-cCccCCCCCcccc-ccccCcchhhhh
Q 002655 588 HLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTK--LQALRM-LGCSNYSGEEEDR-VFFKDAEPFMKE 663 (896)
Q Consensus 588 ~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~--L~~L~l-~~c~~~~~~~e~~-~~~~~~~~~l~~ 663 (896)
+||+++|.|+.+|.+++++ +|+.|-+.+|.+..+..+.+.+=+. |++|.- ..|..+....+.. ............
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 9999999999999999999 9999999999887777664432221 333321 1121111111000 000000111222
Q ss_pred hccCcCCceeEEEecchhhhHh-hhhccccccceeEEEecccCC----------------------CCcccccchhhccc
Q 002655 664 LLCLENLDLLSFTFDSWHAFET-FLTFQKLLSCTESLELTKLYT----------------------PMSLNVLPLAYMKH 720 (896)
Q Consensus 664 L~~L~~L~~l~i~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~----------------------~~~~~~~~l~~~~~ 720 (896)
...+.+.+.|++.....+.++. .++... ..-..+..+..+.- ..+.....++.+++
T Consensus 358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~-~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLTLVPDEVFEAAK-SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred hhhhhhhhhhcccccccccCCHHHHHHhh-hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 2233334444443222211111 010000 01122222222110 00111112344455
Q ss_pred cceEEeccCCceeeeeccccccccccccccCcccEEeeccCCCCCCCcccc-cCCCCcEEeEecCccccccccCCcCccc
Q 002655 721 LKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTWLV-FAPNLKNIDVQNCNNMEEIISPGKLSEV 799 (896)
Q Consensus 721 L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~-~l~~L~~L~L~~c~~l~~l~~~~~~~~l 799 (896)
|..|+++++....++.+.. .+..|+.|+|+.. +...+|-.. .+..|+.+-.++ +++..++.
T Consensus 437 Lt~L~L~NN~Ln~LP~e~~---------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~------- 498 (565)
T KOG0472|consen 437 LTFLDLSNNLLNDLPEEMG---------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDP------- 498 (565)
T ss_pred ceeeecccchhhhcchhhh---------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccCh-------
Confidence 5555555555444433332 2444555555554 344444222 222233332222 33433322
Q ss_pred cccccccccCcccceeeccCCcccccccCCCCCCCCccEEEecCCC
Q 002655 800 SEIKERQNFLAELKFLCLKDLENLESIYFDPLPFPQLKEIEVTGCP 845 (896)
Q Consensus 800 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~c~ 845 (896)
.....+.+|..|++.+ ..+..+|...++|.+|++|+++|.|
T Consensus 499 ----~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 ----SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ----HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 2266788999999977 6899999999999999999999976
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.5e-13 Score=159.34 Aligned_cols=251 Identities=24% Similarity=0.200 Sum_probs=142.5
Q ss_pred EEEecCcccccCCcccCcccceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEeccccccccc
Q 002655 496 FLVHAGALLTEAPKIKDWEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNK 575 (896)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 575 (896)
.+......+..+|.. -..+++.|++.+|.+..+|.. .++|++|++++|.++.+|.. .++|+.|++++| .+..
T Consensus 205 ~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTH 276 (788)
T ss_pred EEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhh
Confidence 333333344555542 124678888888888887754 57888888888888877652 457888888888 6777
Q ss_pred CCccccCCCcCcEEeccCCCccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCcccccccc
Q 002655 576 LPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFK 655 (896)
Q Consensus 576 lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~ 655 (896)
+|... .+|+.|++++|.++.+|.. +++|+.|++++|.+..+|.. . .+|+.|.+.+|. +.
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l-p---~~L~~L~Ls~N~-L~---------- 335 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL-P---SELCKLWAYNNQ-LT---------- 335 (788)
T ss_pred hhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-c---ccccccccccCc-cc----------
Confidence 77533 5677888888888888763 46788888888888777752 2 356667766641 11
Q ss_pred CcchhhhhhccC-cCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceee
Q 002655 656 DAEPFMKELLCL-ENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEEL 734 (896)
Q Consensus 656 ~~~~~l~~L~~L-~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l 734 (896)
.++.+ .+|+.|++..+....++. ...+|..|.+.++. ...++. + +.+|+.|++++|.+..+
T Consensus 336 -------~LP~lp~~Lq~LdLS~N~Ls~LP~------lp~~L~~L~Ls~N~-L~~LP~--l--~~~L~~LdLs~N~Lt~L 397 (788)
T PRK15387 336 -------SLPTLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNR-LTSLPA--L--PSGLKELIVSGNRLTSL 397 (788)
T ss_pred -------cccccccccceEecCCCccCCCCC------CCcccceehhhccc-cccCcc--c--ccccceEEecCCcccCC
Confidence 11111 245555555443332221 12344445444322 111111 1 23566666666554432
Q ss_pred eeccccccccccccccCcccEEeeccCCCCCCCcccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccce
Q 002655 735 KIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTWLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKF 814 (896)
Q Consensus 735 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~ 814 (896)
+. .+++|+.|+++++ .++.+|.+ +.+|+.|++++ +.++.+|. ....+++|+.
T Consensus 398 P~------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~-NqLt~LP~------------sl~~L~~L~~ 449 (788)
T PRK15387 398 PV------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYR-NQLTRLPE------------SLIHLSSETT 449 (788)
T ss_pred CC------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhcc-CcccccCh------------HHhhccCCCe
Confidence 11 1245666666665 35555432 23556666655 33444432 1344566666
Q ss_pred eeccCCc
Q 002655 815 LCLKDLE 821 (896)
Q Consensus 815 L~l~~~~ 821 (896)
|+|++++
T Consensus 450 LdLs~N~ 456 (788)
T PRK15387 450 VNLEGNP 456 (788)
T ss_pred EECCCCC
Confidence 6666543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=3.9e-16 Score=158.24 Aligned_cols=126 Identities=29% Similarity=0.422 Sum_probs=68.9
Q ss_pred ccCcccceeeeccccCccccCC-CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcE
Q 002655 510 IKDWEGFKRISLMENNITSLSA-IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEH 588 (896)
Q Consensus 510 ~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 588 (896)
...+..+..+.+++|....+|+ +..+..+..|+.+.|++..+|+. ++.+..|+.|+++.| .+.++|++++.+..|..
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLED 141 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhh
Confidence 3344445555555555544432 45555555555555555555554 444555555555555 45555555555555555
Q ss_pred EeccCCCccccchhhhcCCCCcEEeccccccccccccccCCCCccceeec
Q 002655 589 LDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRM 638 (896)
Q Consensus 589 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l 638 (896)
|+..+|++..+|.+++++.+|..|++.++++..+|+..+. |+.|++|+.
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~ 190 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDC 190 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhccc
Confidence 5555555555555555555555555555555555555332 555555544
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.2e-15 Score=136.77 Aligned_cols=161 Identities=29% Similarity=0.404 Sum_probs=133.2
Q ss_pred cccCCcccCcccceeeeccccCccccC-CCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccC
Q 002655 504 LTEAPKIKDWEGFKRISLMENNITSLS-AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSS 582 (896)
Q Consensus 504 ~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~ 582 (896)
+.+++.+-+++++.+|.++.|.+..+| .+.++.+|++|.+++|.++.+|.+ ++.++.||.|+++-| .+..+|..||.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 345566667788899999999988775 488999999999999999999887 788999999999988 78889999999
Q ss_pred CCcCcEEeccCCCcc--ccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchh
Q 002655 583 LISLEHLDLSFTVIR--ELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPF 660 (896)
Q Consensus 583 l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~ 660 (896)
++.|++|||++|++. .+|..+..++.|+.|++++|.++-+|++ ++++++||.|.+.+..- ...
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndl--------------l~l 165 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDL--------------LSL 165 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCch--------------hhC
Confidence 999999999998776 7898888889999999999988999988 89999999998887422 234
Q ss_pred hhhhccCcCCceeEEEecchh
Q 002655 661 MKELLCLENLDLLSFTFDSWH 681 (896)
Q Consensus 661 l~~L~~L~~L~~l~i~~~~~~ 681 (896)
..++..|+.|+.|.+..+...
T Consensus 166 pkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cHHHHHHHHHHHHhcccceee
Confidence 566777777777777655443
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=9.3e-14 Score=164.65 Aligned_cols=316 Identities=22% Similarity=0.253 Sum_probs=190.1
Q ss_pred cCCcccCcccceeeeccccC--ccccCC--CCCCCCCcEEEcccCc-cccccchhhccCCCccEEecccccccccCCccc
Q 002655 506 EAPKIKDWEGFKRISLMENN--ITSLSA--IPNCPHLRTLLLYRNR-ISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL 580 (896)
Q Consensus 506 ~~~~~~~~~~l~~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~ 580 (896)
..+.....++++.|-+..|. +..++. |..++.||+|++++|. +.++|.. ++.+-+||||+|+++ .+..+|.++
T Consensus 537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l 614 (889)
T KOG4658|consen 537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGL 614 (889)
T ss_pred hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-CccccchHH
Confidence 33444445578898888886 566666 8889999999999887 7788876 899999999999999 899999999
Q ss_pred cCCCcCcEEeccCCC-ccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcch
Q 002655 581 SSLISLEHLDLSFTV-IRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEP 659 (896)
Q Consensus 581 ~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~ 659 (896)
++|..|.+||+..+. +..+|.....|.+|++|.+....... ....++.+.+|++|....+..-. ..
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~~ls~~~~s------------~~ 681 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLENLSITISS------------VL 681 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeecccccc-chhhHHhhhcccchhhheeecch------------hH
Confidence 999999999999984 45556666669999999998764111 11123444555555444431111 01
Q ss_pred hhhhhccCcCCceeEEEec-chhhhHhhhhccccccceeEEEecccCCCCccc----ccchh-hccccceEEeccCCcee
Q 002655 660 FMKELLCLENLDLLSFTFD-SWHAFETFLTFQKLLSCTESLELTKLYTPMSLN----VLPLA-YMKHLKNFLIQNCAFEE 733 (896)
Q Consensus 660 ~l~~L~~L~~L~~l~i~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~-~~~~L~~L~i~~~~~~~ 733 (896)
.+..+..+..|..+..... ..............+.+|+.|.+.+|....... ..... .++++..+.+.+|....
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc
Confidence 1222333333321111111 001222223334456788999998887642211 01111 14566666666666554
Q ss_pred eeeccccccccccccccCcccEEeeccCCCCCCCc-ccccCCCCcEEeEecCccccccccCCcCccccccccccccCccc
Q 002655 734 LKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELT-WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAEL 812 (896)
Q Consensus 734 l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L 812 (896)
. +.|. ...++|++|.+..|..++++. ....+..++.+.+.. +.+......-..+.+..+....-.+++|
T Consensus 762 ~-l~~~--------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f-~~~~~l~~~~~l~~l~~i~~~~l~~~~l 831 (889)
T KOG4658|consen 762 D-LTWL--------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPF-NKLEGLRMLCSLGGLPQLYWLPLSFLKL 831 (889)
T ss_pred c-cchh--------hccCcccEEEEecccccccCCCHHHHhhhcccEEecc-cccccceeeecCCCCceeEecccCccch
Confidence 2 2222 247899999999998888754 355555565533332 2222221000011111111112234445
Q ss_pred ceeeccCCcccccccCCCCCCCCccEEEecCC-CCCCCCCCC
Q 002655 813 KFLCLKDLENLESIYFDPLPFPQLKEIEVTGC-PKLKKLPLD 853 (896)
Q Consensus 813 ~~L~l~~~~~L~~l~~~~~~~~~L~~L~i~~c-~~L~~lp~~ 853 (896)
+.+.+..||++. .+|.+.++.+.+| +++..+|..
T Consensus 832 ~~~~ve~~p~l~-------~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 832 EELIVEECPKLG-------KLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred hheehhcCcccc-------cCccccccceeccccceeecCCc
Confidence 555555555444 5788889999997 888888875
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=2.6e-12 Score=149.06 Aligned_cols=254 Identities=20% Similarity=0.185 Sum_probs=180.7
Q ss_pred ceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCC
Q 002655 516 FKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTV 595 (896)
Q Consensus 516 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 595 (896)
-..|+++.+.+..+|... .++|+.|.+.+|.++.+|.. +++|++|+|++| .++.+|.. ..+|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCCc
Confidence 456788888888887621 25899999999999988763 579999999999 78888854 4689999999999
Q ss_pred ccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEE
Q 002655 596 IRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSF 675 (896)
Q Consensus 596 i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i 675 (896)
+..+|.. +.+|+.|++++|.+..+|.. +++|+.|+++++ .+... +.. ..+|+.|.+
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N-~L~~L----------p~l------p~~L~~L~L 329 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDN-QLASL----------PAL------PSELCKLWA 329 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccccccc----ccccceeECCCC-ccccC----------CCC------ccccccccc
Confidence 9998863 36788999999999998862 478999999885 33221 011 123444444
Q ss_pred EecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccccCcccE
Q 002655 676 TFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHT 755 (896)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~ 755 (896)
..+....++. ...+|+.|++.++. ...++. + .++|+.|.+++|.+..++. .+.+|+.
T Consensus 330 s~N~L~~LP~------lp~~Lq~LdLS~N~-Ls~LP~--l--p~~L~~L~Ls~N~L~~LP~------------l~~~L~~ 386 (788)
T PRK15387 330 YNNQLTSLPT------LPSGLQELSVSDNQ-LASLPT--L--PSELYKLWAYNNRLTSLPA------------LPSGLKE 386 (788)
T ss_pred ccCccccccc------cccccceEecCCCc-cCCCCC--C--CcccceehhhccccccCcc------------cccccce
Confidence 4443333222 23478888887654 233322 1 3578888888877654321 2357899
Q ss_pred EeeccCCCCCCCcccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCcccccccCCCCCCCC
Q 002655 756 VFISDCSRLKELTWLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLESIYFDPLPFPQ 835 (896)
Q Consensus 756 L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~ 835 (896)
|+|+++ .++.+|.. .++|+.|+++++ .++.+|. .+.+|+.|++++ ..++.+|.....+++
T Consensus 387 LdLs~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP~---------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~ 446 (788)
T PRK15387 387 LIVSGN-RLTSLPVL--PSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYR-NQLTRLPESLIHLSS 446 (788)
T ss_pred EEecCC-cccCCCCc--ccCCCEEEccCC-cCCCCCc---------------chhhhhhhhhcc-CcccccChHHhhccC
Confidence 999887 57766643 468999999984 4666543 234688888887 467888877778999
Q ss_pred ccEEEecCCC
Q 002655 836 LKEIEVTGCP 845 (896)
Q Consensus 836 L~~L~i~~c~ 845 (896)
|+.|++++++
T Consensus 447 L~~LdLs~N~ 456 (788)
T PRK15387 447 ETTVNLEGNP 456 (788)
T ss_pred CCeEECCCCC
Confidence 9999999875
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.36 E-value=3.2e-14 Score=159.23 Aligned_cols=268 Identities=22% Similarity=0.241 Sum_probs=126.2
Q ss_pred cceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCC
Q 002655 515 GFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFT 594 (896)
Q Consensus 515 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~ 594 (896)
++++|....|.+..+..-+.-.+|++++++.|.++.+| .+++.+.+|..|+..+| .+..+|..+....+|++|++..|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhh
Confidence 34444444444443333333445555555555555555 44555555555555555 44555555555555555555555
Q ss_pred CccccchhhhcCCCCcEEeccccccccccccccCCCCc-cceeeccCccCCCCCccccccccCcchhhhhhccCcCCcee
Q 002655 595 VIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTK-LQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLL 673 (896)
Q Consensus 595 ~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~-L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l 673 (896)
.++.+|+....++.|++|++..|++..+|...+..+.. |+.|..+. ..+.... .... ..+..|+.|
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp------~~~e------~~~~~Lq~L 364 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLP------SYEE------NNHAALQEL 364 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh-ccccccc------cccc------hhhHHHHHH
Confidence 55555555555555555555555555555533222221 33332221 1111000 0000 011112222
Q ss_pred EEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccccCcc
Q 002655 674 SFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSL 753 (896)
Q Consensus 674 ~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L 753 (896)
.+..+... +..+..+....+|+.|++..+. +..++...+.+++.|++|.++||....++... . .++.|
T Consensus 365 ylanN~Lt--d~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv-a--------~~~~L 432 (1081)
T KOG0618|consen 365 YLANNHLT--DSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTV-A--------NLGRL 432 (1081)
T ss_pred HHhcCccc--ccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHH-H--------hhhhh
Confidence 22211110 0011112224456666665543 23333334555666666666666666554222 1 35666
Q ss_pred cEEeeccCCCCCCCcccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCcc
Q 002655 754 HTVFISDCSRLKELTWLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLEN 822 (896)
Q Consensus 754 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 822 (896)
+.|...++ .+..+|.+..++.|+.+||+. ++++.+.-... -.-|+|++|++++.+.
T Consensus 433 ~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~-----------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHSN-QLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEA-----------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcCC-ceeechhhhhcCcceEEeccc-chhhhhhhhhh-----------CCCcccceeeccCCcc
Confidence 66665543 455566666677777777753 55555432110 0116777777776654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=3.8e-12 Score=148.79 Aligned_cols=246 Identities=19% Similarity=0.188 Sum_probs=120.2
Q ss_pred eeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCc
Q 002655 517 KRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVI 596 (896)
Q Consensus 517 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i 596 (896)
..+.+.++.+..+|.. -.++|+.|++++|.++.+|..++ .+|++|++++| .++.+|..+. .+|+.|++++|.+
T Consensus 181 ~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCcc
Confidence 3445555555544431 12356666666666666655432 35666666666 4555665443 3566666666666
Q ss_pred cccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEE
Q 002655 597 RELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFT 676 (896)
Q Consensus 597 ~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~ 676 (896)
..+|..+. .+|+.|++++|.+..+|.. +. ++|+.|++++| ++... +. .+. ++|+.|++.
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N-~Lt~L----------P~---~lp--~sL~~L~Ls 312 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPEN-LP--EELRYLSVYDN-SIRTL----------PA---HLP--SGITHLNVQ 312 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccc-cC--CCCcEEECCCC-ccccC----------cc---cch--hhHHHHHhc
Confidence 66665543 3566666666666666543 22 35666666554 22110 00 000 122222222
Q ss_pred ecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccccCcccEE
Q 002655 677 FDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTV 756 (896)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L 756 (896)
.+....++. ...++|+.|.+.++.. ..++. .+ +++|+.|++++|.+..++. ...++|+.|
T Consensus 313 ~N~Lt~LP~-----~l~~sL~~L~Ls~N~L-t~LP~-~l--~~sL~~L~Ls~N~L~~LP~-----------~lp~~L~~L 372 (754)
T PRK15370 313 SNSLTALPE-----TLPPGLKTLEAGENAL-TSLPA-SL--PPELQVLDVSKNQITVLPE-----------TLPPTITTL 372 (754)
T ss_pred CCccccCCc-----cccccceeccccCCcc-ccCCh-hh--cCcccEEECCCCCCCcCCh-----------hhcCCcCEE
Confidence 222111110 0123555555555432 11221 11 2577777777776554321 123567777
Q ss_pred eeccCCCCCCCcccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCc
Q 002655 757 FISDCSRLKELTWLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLE 821 (896)
Q Consensus 757 ~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 821 (896)
+|++| .++.+|.- -.++|+.|++++| .++.+|. .++.....+|++..|.+.+.+
T Consensus 373 dLs~N-~Lt~LP~~-l~~sL~~LdLs~N-~L~~LP~--------sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 373 DVSRN-ALTNLPEN-LPAALQIMQASRN-NLVRLPE--------SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ECCCC-cCCCCCHh-HHHHHHHHhhccC-CcccCch--------hHHHHhhcCCCccEEEeeCCC
Confidence 77776 45555531 1235777777773 4555543 122223345666777776643
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=5.1e-11 Score=148.56 Aligned_cols=292 Identities=17% Similarity=0.199 Sum_probs=180.2
Q ss_pred cccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAI 234 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i 234 (896)
.+.+|-|..-.+.+ ... ...+++.|+|++|.||||++..+.... . .++|+++... .++..+...+
T Consensus 13 ~~~~~~R~rl~~~l----~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~------~---~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA-NNYRLVLVTSPAGYGKTTLISQWAAGK------N---NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccccCcchHHHHHH----hcc-cCCCeEEEECCCCCCHHHHHHHHHHhC------C---CeEEEecCcccCCHHHHHHHH
Confidence 35677787555554 322 257899999999999999999987532 2 5899999644 4556666777
Q ss_pred HHHhCCCccc-----------ccccCHHHHHHHHHHHhc--CCcEEEEEeccCCcc--cccccccC-cCCCCCCcEEEEe
Q 002655 235 GKRIGLSAES-----------WMDKSLEEKALDISNILS--RKKFVLLLDDIWQPI--DLTELGIP-LQSLNVSSKVVFT 298 (896)
Q Consensus 235 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~~~~~~-l~~~~~gs~IivT 298 (896)
+..++..... ....+.......+...+. +.+++|||||+...+ ....+... +.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7666421110 000122233333333333 689999999996642 12222222 2333456788899
Q ss_pred cCChhhhcc--C-CCCceEEec----cCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCC
Q 002655 299 TRSLDVCGS--M-EADEKIEVK----YLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYK 371 (896)
Q Consensus 299 tR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~ 371 (896)
||...-... . ......++. +|+.+|+.++|....+... + .+.+..|.+.|+|.|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 997432211 0 112345555 9999999999987765422 1 3457899999999999999998776543
Q ss_pred CChhHHHHHHHHhcCCCCcCCCChHHHHhHHhh-ccCCCCchhhhHHHhhhcCCCCCcccchhhHHHHHHHcCCcchhhh
Q 002655 372 KNPDEWKYATKVLSTSPEKFSGMEENVFARLKF-SYDSLPNYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDAFDE 450 (896)
Q Consensus 372 ~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~ 450 (896)
.... ......+... ....+...+.- .|+.||+ ..+..+...|+++. +.. .+...- . ..+.
T Consensus 233 ~~~~--~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~~---~~~-~l~~~l-----~-~~~~ 293 (903)
T PRK04841 233 NSSL--HDSARRLAGI------NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLRS---MND-ALIVRV-----T-GEEN 293 (903)
T ss_pred CCch--hhhhHhhcCC------CchhHHHHHHHHHHhcCCH-HHHHHHHHhccccc---CCH-HHHHHH-----c-CCCc
Confidence 2100 0111111000 01245554433 3789998 78999999999872 332 222211 1 2345
Q ss_pred hhHHHHHHHHcccccc-c--ccCeEEehHHHHHHHHHHH
Q 002655 451 GYTIIGDLLRACLLEE-V--NDNHVKMHDVIRDMALWIA 486 (896)
Q Consensus 451 ~~~~l~~L~~~~Ll~~-~--~~~~~~mHdlv~~~a~~~~ 486 (896)
+...+++|.+.+++.. . +...|+.|++++++.+...
T Consensus 294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 6788999999999653 2 2347999999999998765
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=1.1e-13 Score=155.04 Aligned_cols=296 Identities=21% Similarity=0.277 Sum_probs=170.5
Q ss_pred ceeeeccccCccc--cCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccC
Q 002655 516 FKRISLMENNITS--LSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSF 593 (896)
Q Consensus 516 l~~l~l~~~~~~~--l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 593 (896)
+..|++..|.+-. ++...++-+|++|++++|.+..+|.. +..+.+|+.|+++.| .+...|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchh-hHhhCchhhhhhhcchhheecc
Confidence 4455555554443 22334455688888888888888776 677888888888888 7888888888888888888888
Q ss_pred CCccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCcccc-----c-cccCcchhhhhhccC
Q 002655 594 TVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDR-----V-FFKDAEPFMKELLCL 667 (896)
Q Consensus 594 ~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~-----~-~~~~~~~~l~~L~~L 667 (896)
|.+..+|.++..+++|++|++++|++..+|.- +..++.+..+..+++..+....+.. . ........+.++.++
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh
Confidence 88888888888888888888888888888864 6667777777666541111100000 0 000001122223333
Q ss_pred cCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccc
Q 002655 668 ENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQ 747 (896)
Q Consensus 668 ~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 747 (896)
++ .+++..+....+ .+..+.+++.+...... ...+. + .-++|+.|..+.|...++.. .
T Consensus 180 ~~--~ldLr~N~~~~~-----dls~~~~l~~l~c~rn~-ls~l~---~-~g~~l~~L~a~~n~l~~~~~----------~ 237 (1081)
T KOG0618|consen 180 TH--QLDLRYNEMEVL-----DLSNLANLEVLHCERNQ-LSELE---I-SGPSLTALYADHNPLTTLDV----------H 237 (1081)
T ss_pred he--eeecccchhhhh-----hhhhccchhhhhhhhcc-cceEE---e-cCcchheeeeccCcceeecc----------c
Confidence 33 233332222100 00111122222211100 00000 1 12556666666666554211 1
Q ss_pred cccCcccEEeeccCCCCCCCc-ccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCcccccc
Q 002655 748 RGFRSLHTVFISDCSRLKELT-WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLESI 826 (896)
Q Consensus 748 ~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l 826 (896)
....+|++++++.. ++..+| |++.+++|+.|.+.+ +.+..++. ......+|+.|.+..| .++.+
T Consensus 238 p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~------------ri~~~~~L~~l~~~~n-el~yi 302 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANH-NRLVALPL------------RISRITSLVSLSAAYN-ELEYI 302 (1081)
T ss_pred cccccceeeecchh-hhhcchHHHHhcccceEecccc-hhHHhhHH------------HHhhhhhHHHHHhhhh-hhhhC
Confidence 24568888888876 556655 788889999988876 45555543 1334455666666553 56666
Q ss_pred cCCCCCCCCccEEEecCCCCCCCCCC
Q 002655 827 YFDPLPFPQLKEIEVTGCPKLKKLPL 852 (896)
Q Consensus 827 ~~~~~~~~~L~~L~i~~c~~L~~lp~ 852 (896)
+.....+.+|+.|++.. .+|..+|.
T Consensus 303 p~~le~~~sL~tLdL~~-N~L~~lp~ 327 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQS-NNLPSLPD 327 (1081)
T ss_pred CCcccccceeeeeeehh-ccccccch
Confidence 66565666666666655 35555554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=4.1e-12 Score=148.47 Aligned_cols=245 Identities=20% Similarity=0.185 Sum_probs=150.9
Q ss_pred CCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCccccchhhhcCCCCcEEecc
Q 002655 536 PHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLE 615 (896)
Q Consensus 536 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 615 (896)
.+...|.++++.++.+|..+ .++|+.|+|++| .++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI---PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc---ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 35678999999999988763 358999999999 8889998765 599999999999999998764 489999999
Q ss_pred ccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhhhHhhhhccccccc
Q 002655 616 YVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFETFLTFQKLLSC 695 (896)
Q Consensus 616 ~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~~~~~ 695 (896)
+|.+..+|.. +. ++|+.|+++++ ++... ...+. .+|+.|++..+....++. ...++
T Consensus 250 ~N~L~~LP~~-l~--s~L~~L~Ls~N-~L~~L-------------P~~l~--~sL~~L~Ls~N~Lt~LP~-----~lp~s 305 (754)
T PRK15370 250 INRITELPER-LP--SALQSLDLFHN-KISCL-------------PENLP--EELRYLSVYDNSIRTLPA-----HLPSG 305 (754)
T ss_pred CCccCcCChh-Hh--CCCCEEECcCC-ccCcc-------------ccccC--CCCcEEECCCCccccCcc-----cchhh
Confidence 9999999976 43 57999999863 33321 11111 356666665443332221 11234
Q ss_pred eeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccccCcccEEeeccCCCCCCCcccccCCC
Q 002655 696 TESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTWLVFAPN 775 (896)
Q Consensus 696 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~ 775 (896)
|+.|.+.++.. ..++. ...++|+.|.+++|....++. ..+++|+.|+|++| +++.+|. .-.++
T Consensus 306 L~~L~Ls~N~L-t~LP~---~l~~sL~~L~Ls~N~Lt~LP~-----------~l~~sL~~L~Ls~N-~L~~LP~-~lp~~ 368 (754)
T PRK15370 306 ITHLNVQSNSL-TALPE---TLPPGLKTLEAGENALTSLPA-----------SLPPELQVLDVSKN-QITVLPE-TLPPT 368 (754)
T ss_pred HHHHHhcCCcc-ccCCc---cccccceeccccCCccccCCh-----------hhcCcccEEECCCC-CCCcCCh-hhcCC
Confidence 55555554332 11111 112567777777766554321 12356777777776 3555542 11356
Q ss_pred CcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCcccccccCC----CCCCCCccEEEecCCC
Q 002655 776 LKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLESIYFD----PLPFPQLKEIEVTGCP 845 (896)
Q Consensus 776 L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~----~~~~~~L~~L~i~~c~ 845 (896)
|+.|+|++| .++.+|. ...++|+.|+++++ ++..+|.. ...+|++..|.+.+.|
T Consensus 369 L~~LdLs~N-~Lt~LP~--------------~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPE--------------NLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCEEECCCC-cCCCCCH--------------hHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 777777764 3444432 01235666666663 45555432 2234666666666644
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=8.8e-14 Score=124.98 Aligned_cols=165 Identities=25% Similarity=0.389 Sum_probs=128.0
Q ss_pred ccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCccccchhhhc
Q 002655 526 ITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPEEMKA 605 (896)
Q Consensus 526 ~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~ 605 (896)
+.+++.+.++++...|.+++|.++.+|+. +..+.+|++|++++| .++++|.+++.+++|+.|++.-|.+..+|.+++.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 44566777888899999999999999998 788999999999999 8999999999999999999999999999999999
Q ss_pred CCCCcEEecccccc--ccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhhh
Q 002655 606 LVNLRYLNLEYVYL--NRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAF 683 (896)
Q Consensus 606 L~~L~~L~l~~~~l--~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~ 683 (896)
++-|+.||+.+|++ ..+|.. +-.|+.|+.|++.+. .+ .....+..+|++|+.|++..++...+
T Consensus 101 ~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dn-df-------------e~lp~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDN-DF-------------EILPPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred CchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCC-Cc-------------ccCChhhhhhcceeEEeeccCchhhC
Confidence 99999999999855 457765 667888888888873 11 23445667777777777654432221
Q ss_pred HhhhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeee
Q 002655 684 ETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELK 735 (896)
Q Consensus 684 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~ 735 (896)
+. .+..+..|++|+|.++...-++
T Consensus 166 pk----------------------------eig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 166 PK----------------------------EIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cH----------------------------HHHHHHHHHHHhcccceeeecC
Confidence 11 2444567777777777665543
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=4.8e-10 Score=125.23 Aligned_cols=294 Identities=17% Similarity=0.152 Sum_probs=169.4
Q ss_pred cccccchhHHHHHHHHHhhcc--CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQ--EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
++.++||+++++++...+... ......+.|+|++|+|||++++.+++... .....-..+++++....+...++..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~---~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE---EIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HhcCCcEEEEEECCcCCCHHHHHHH
Confidence 357999999999999998553 22456688999999999999999999874 2222345677777777788899999
Q ss_pred HHHHhCCCcccccccCHHHHHHHHHHHhc--CCcEEEEEeccCCcc------cccccccCcCCCCCCcE--EEEecCChh
Q 002655 234 IGKRIGLSAESWMDKSLEEKALDISNILS--RKKFVLLLDDIWQPI------DLTELGIPLQSLNVSSK--VVFTTRSLD 303 (896)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~gs~--IivTtR~~~ 303 (896)
|+.+++.........+.++....+.+.+. +++.+||||+++... .+..+..... ...+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcc
Confidence 99998652211123355667777777775 456899999998642 1222222111 112333 566666544
Q ss_pred hhccCC-------CCceEEeccCChHHHHHHHHHhhCCc--ccCCCcc-HHHHHHHHHHHcCCchhHHHHHHHHh--c--
Q 002655 304 VCGSME-------ADEKIEVKYLVHDEAWRLFQEKVGEA--TLRCHSD-ILELAQTLARECCGLPLALKTIGRAM--A-- 369 (896)
Q Consensus 304 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~-~~~~~~~i~~~c~g~PLal~~~g~~L--~-- 369 (896)
+..... ....+.+++++.++..+++..++... ....+++ ++.+++......|..+.|+.++-... +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 13467899999999999998876321 1012222 22233333333566777777664322 1
Q ss_pred CC---CChhHHHHHHHHhcCCCCcCCCChHHHHhHHhhccCCCCchhhhHHHhhhc-CCCC-CcccchhhHHHHH--HH-
Q 002655 370 YK---KNPDEWKYATKVLSTSPEKFSGMEENVFARLKFSYDSLPNYIIRSCFLYCS-LFPE-DYEVYKGDLIDYW--TS- 441 (896)
Q Consensus 370 ~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp~-~~~i~~~~li~~w--~a- 441 (896)
.. -+.+....+.+... .....-.+..||. +.|..+..++ .... ...+...++.... ++
T Consensus 265 ~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 11 23344444443321 1223445778887 4333332222 1111 1233334443221 11
Q ss_pred -cCCcc-hhhhhhHHHHHHHHccccccc
Q 002655 442 -EGFVD-AFDEGYTIIGDLLRACLLEEV 467 (896)
Q Consensus 442 -~g~i~-~~~~~~~~l~~L~~~~Ll~~~ 467 (896)
.|.-+ .......++..|...+++...
T Consensus 331 ~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 23211 335566788888888888753
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=9.8e-10 Score=115.88 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=113.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
+.+++.|+|++|+||||+++.+++... ...+ .++|+ +....+..+++..|+..++.+.. ..+.......+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~----~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~ 112 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD----QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELE 112 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC----CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHH
Confidence 456899999999999999999998862 1111 22333 33445778899999999887542 222233333333
Q ss_pred HH-----hcCCcEEEEEeccCCcc--cccccccC--c-CCCCCCcEEEEecCChhhhccCC----------CCceEEecc
Q 002655 259 NI-----LSRKKFVLLLDDIWQPI--DLTELGIP--L-QSLNVSSKVVFTTRSLDVCGSME----------ADEKIEVKY 318 (896)
Q Consensus 259 ~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~--l-~~~~~gs~IivTtR~~~v~~~~~----------~~~~~~l~~ 318 (896)
.. ..+++.++|+||++... .++.+... . ........|++|.... ....+. ....+.+++
T Consensus 113 ~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 113 DFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCC
Confidence 32 26788999999998743 33333211 1 1112233456665432 211111 134678999
Q ss_pred CChHHHHHHHHHhhCCcccCC-CccHHHHHHHHHHHcCCchhHHHHHHHHh
Q 002655 319 LVHDEAWRLFQEKVGEATLRC-HSDILELAQTLARECCGLPLALKTIGRAM 368 (896)
Q Consensus 319 L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~~i~~~c~g~PLal~~~g~~L 368 (896)
++.+|..+++...+....... ..-..+..+.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999987764222111 11235679999999999999999988765
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=7.3e-09 Score=114.49 Aligned_cols=296 Identities=16% Similarity=0.174 Sum_probs=167.1
Q ss_pred ccccchhHHHHHHHHHhhcc--CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCC-CEEEEEEeCCCCCHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ--EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHF-DVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~ 233 (896)
..++||++++++|..++... ....+.+.|+|++|+|||++++.+++........... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 46899999999999998752 2245678999999999999999999876311000011 24678888777778889999
Q ss_pred HHHHh---CCCcccccccCHHHHHHHHHHHhc--CCcEEEEEeccCCcc-c----ccccccCc-CCCC--CCcEEEEecC
Q 002655 234 IGKRI---GLSAESWMDKSLEEKALDISNILS--RKKFVLLLDDIWQPI-D----LTELGIPL-QSLN--VSSKVVFTTR 300 (896)
Q Consensus 234 i~~~l---~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~~~~~l-~~~~--~gs~IivTtR 300 (896)
|++++ +..... ...+..+....+.+.+. +++++||||+++... . +..+.... .... ....+|.+|.
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 99988 332111 22344555666666663 567899999998751 1 11221110 1111 2234555554
Q ss_pred ChhhhccCC-------CCceEEeccCChHHHHHHHHHhhCC--cccCCCccHHHHHHHHHHHcCCchh-HHHHHHHHh--
Q 002655 301 SLDVCGSME-------ADEKIEVKYLVHDEAWRLFQEKVGE--ATLRCHSDILELAQTLARECCGLPL-ALKTIGRAM-- 368 (896)
Q Consensus 301 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~g~~L-- 368 (896)
.......+. ....+.+++++.+|..+++..++.. ......++..+....++....|.|- |+.++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443211111 1246899999999999999988641 1111233334455667777778884 433332211
Q ss_pred c--CC---CChhHHHHHHHHhcCCCCcCCCChHHHHhHHhhccCCCCchhhhHHHhhhcCC--CCCcccchhhHHHHHH-
Q 002655 369 A--YK---KNPDEWKYATKVLSTSPEKFSGMEENVFARLKFSYDSLPNYIIRSCFLYCSLF--PEDYEVYKGDLIDYWT- 440 (896)
Q Consensus 369 ~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~w~- 440 (896)
. .. -+.+..+.+.+.+. .....-++..||. +.+..+..+... -.+..+...++...+.
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 11 22333333332221 1223345567877 444433333211 1223344444444221
Q ss_pred -Hc--CCcc-hhhhhhHHHHHHHHccccccc
Q 002655 441 -SE--GFVD-AFDEGYTIIGDLLRACLLEEV 467 (896)
Q Consensus 441 -a~--g~i~-~~~~~~~~l~~L~~~~Ll~~~ 467 (896)
++ |..+ .......++..|...|+++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 12 2111 456677788888888888764
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=1.9e-12 Score=131.79 Aligned_cols=275 Identities=19% Similarity=0.187 Sum_probs=165.2
Q ss_pred EEecCcccccCCcccCcccceeeeccccCccccCC--CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccc
Q 002655 497 LVHAGALLTEAPKIKDWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLN 574 (896)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 574 (896)
+...+.++.++|..- ......+.+..|.|..+|+ |..+++||.|+|++|.++.+.+..|.+++.|-.|-+-++..|+
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 334445555555321 1356677888888888875 7888888888888888888888888888888777776644788
Q ss_pred cCCc-cccCCCcCcEEeccCCCccccch-hhhcCCCCcEEeccccccccccccccCCCCccceeeccCcc-----CCCCC
Q 002655 575 KLPS-GLSSLISLEHLDLSFTVIRELPE-EMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCS-----NYSGE 647 (896)
Q Consensus 575 ~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~-----~~~~~ 647 (896)
.+|+ .|+.|..|+-|.+.-|.+..++. .+..|++|..|.+.+|.+..++.+.+..+.+++++.+.... ++.+.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 8875 47888888888888888875544 57788888888888888888888778888888877665421 11110
Q ss_pred ccccccccCcchhhhhhccCcCCceeEEEecchhhhHhhhhccccccceeEE---EecccCCCCcccccchhhccccceE
Q 002655 648 EEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFETFLTFQKLLSCTESL---ELTKLYTPMSLNVLPLAYMKHLKNF 724 (896)
Q Consensus 648 ~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~l~~~~~L~~L 724 (896)
.... .....+.+..+...-..+........ ...+...+++++ -...+......+...+..+++|+.|
T Consensus 210 a~~~------a~~~ietsgarc~~p~rl~~~Ri~q~----~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 210 ADDL------AMNPIETSGARCVSPYRLYYKRINQE----DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred hhHH------hhchhhcccceecchHHHHHHHhccc----chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 0000 00000000000000000000000000 000001111111 1112221222222346778999999
Q ss_pred EeccCCceeeeeccccccccccccccCcccEEeeccCCCCCCCcc--cccCCCCcEEeEecCcccccccc
Q 002655 725 LIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTW--LVFAPNLKNIDVQNCNNMEEIIS 792 (896)
Q Consensus 725 ~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~l~~ 792 (896)
++++|.+..+...++. ....++.|.|... ++..+.. +.++.+|+.|+|.+ ++++.+.+
T Consensus 280 nlsnN~i~~i~~~aFe--------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~ 339 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFE--------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAP 339 (498)
T ss_pred ccCCCccchhhhhhhc--------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEec
Confidence 9999988887777766 5677788888775 5665542 56778888888877 56666543
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=2.9e-10 Score=117.26 Aligned_cols=195 Identities=21% Similarity=0.229 Sum_probs=102.1
Q ss_pred ccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH----
Q 002655 159 VVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI---- 234 (896)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i---- 234 (896)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+... ...+ .++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~----~~~~-~~~y~~~~~~~~~~-~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELK----EKGY-KVVYIDFLEESNES-SLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT------EE-CCCHHCCTTBSHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhh----hcCC-cEEEEecccchhhh-HHHHHHHHH
Confidence 799999999999998876 568999999999999999999988762 1111 34444443333222 22222
Q ss_pred ------HHHhC--CCccc------ccccCHHHHHHHHHHHhc--CCcEEEEEeccCCcc-cc---cc----cccCcCC--
Q 002655 235 ------GKRIG--LSAES------WMDKSLEEKALDISNILS--RKKFVLLLDDIWQPI-DL---TE----LGIPLQS-- 288 (896)
Q Consensus 235 ------~~~l~--~~~~~------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~---~~----~~~~l~~-- 288 (896)
.+.++ .+... ............+.+.+. +++.+||+||+.... .. .. +...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11121 00000 001112233333444443 356999999997655 11 11 1111111
Q ss_pred CCCCcEEEEecCChhhhcc--------CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhH
Q 002655 289 LNVSSKVVFTTRSLDVCGS--------MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLA 360 (896)
Q Consensus 289 ~~~gs~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 360 (896)
......+|+++........ .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~ 230 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRY 230 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHH
Confidence 1233344555444433322 2333459999999999999999876433 111 12245579999999999998
Q ss_pred HHH
Q 002655 361 LKT 363 (896)
Q Consensus 361 l~~ 363 (896)
|..
T Consensus 231 l~~ 233 (234)
T PF01637_consen 231 LQE 233 (234)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=2.5e-09 Score=120.44 Aligned_cols=293 Identities=19% Similarity=0.175 Sum_probs=188.7
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 235 (896)
...|-|.. +++.|... .+.+.+.|..++|.|||||+-+.+... ..-..+.|.+++... ++..+...++
T Consensus 19 ~~~v~R~r----L~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~~------~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 19 DNYVVRPR----LLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRELA------ADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred ccccccHH----HHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHhc------CcccceeEeecCCccCCHHHHHHHHH
Confidence 34465654 44444443 267999999999999999999998743 334579999987654 5677777777
Q ss_pred HHhCCCccc-----------ccccCHHHHHHHHHHHhc--CCcEEEEEeccCCcc---cccccccCcCCCCCCcEEEEec
Q 002655 236 KRIGLSAES-----------WMDKSLEEKALDISNILS--RKKFVLLLDDIWQPI---DLTELGIPLQSLNVSSKVVFTT 299 (896)
Q Consensus 236 ~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~gs~IivTt 299 (896)
..++.-.+. ....+.......+..-+. .++..+||||..-.. --..+...+.....+-..||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 777622111 122233344444555443 378999999975432 1222333334455678999999
Q ss_pred CChhhhccC---CCCceEEec----cCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCCC
Q 002655 300 RSLDVCGSM---EADEKIEVK----YLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKK 372 (896)
Q Consensus 300 R~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~ 372 (896)
|+..-.... -.+..++++ .++.+|+-++|....+..- .+...+.+.+..+|-+-|+..++=.++.+.
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~ 241 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNT 241 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCC
Confidence 986543211 112233333 5789999999988764322 134488999999999999999988777433
Q ss_pred ChhHHHHHHHHhcCCCCcCCCChHHHHhHH-hhccCCCCchhhhHHHhhhcCCCCCcccchhhHHHHHHHcCCcchhhhh
Q 002655 373 NPDEWKYATKVLSTSPEKFSGMEENVFARL-KFSYDSLPNYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEG 451 (896)
Q Consensus 373 ~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 451 (896)
+.+.--. ..++..+.+..-| .--++.||+ .+|..++.||+++.- -..|+..-. .++.+
T Consensus 242 ~~~q~~~----------~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~Lt------g~~ng 300 (894)
T COG2909 242 SAEQSLR----------GLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNALT------GEENG 300 (894)
T ss_pred cHHHHhh----------hccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHHh------cCCcH
Confidence 3222111 1111122222222 235788999 789999999999642 133444333 34678
Q ss_pred hHHHHHHHHccccccc---ccCeEEehHHHHHHHHHHHh
Q 002655 452 YTIIGDLLRACLLEEV---NDNHVKMHDVIRDMALWIAC 487 (896)
Q Consensus 452 ~~~l~~L~~~~Ll~~~---~~~~~~mHdlv~~~a~~~~~ 487 (896)
...+++|.+++|+-.. ....|+.|.++.+|.+.-..
T Consensus 301 ~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 301 QAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 8899999999998643 57789999999999875443
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.09 E-value=3.8e-09 Score=113.44 Aligned_cols=276 Identities=17% Similarity=0.137 Sum_probs=155.7
Q ss_pred ccccchhHHHHHHHHHhhcc---CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ---EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
.+|||++..++++..++... ......+.++|++|+|||+||+.+++... ..+ ..+..+.......+ ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~-----~~~---~~~~~~~~~~~~~l-~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG-----VNL---KITSGPALEKPGDL-AA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCE---EEeccchhcCchhH-HH
Confidence 36899999999998888642 22456788999999999999999998763 222 12222111112222 22
Q ss_pred HHHHhCCCc----ccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhhhccCC
Q 002655 234 IGKRIGLSA----ESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCGSME 309 (896)
Q Consensus 234 i~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~ 309 (896)
.+..++... ++....+ .+....+...+.+.+..+|+|+..+...+.. +++ +.+-|..||+...+...+.
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHH
Confidence 233333211 0001111 1223446666777777788887766554432 121 2455667777654432211
Q ss_pred --CCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHhcCC
Q 002655 310 --ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVLSTS 387 (896)
Q Consensus 310 --~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~~~~~w~~~~~~l~~~ 387 (896)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..+. ..+..
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCC
Confidence 1346799999999999999988764332222 4557889999999997665444322 11110 01110
Q ss_pred CCcCCCChHHHHhHHhhccCCCCchhhhHHHh-hhcCCCCCcccchhhHHHHHHHcCCcchhhhhhHHHH-HHHHccccc
Q 002655 388 PEKFSGMEENVFARLKFSYDSLPNYIIRSCFL-YCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEGYTIIG-DLLRACLLE 465 (896)
Q Consensus 388 ~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~l~-~L~~~~Ll~ 465 (896)
... .+.-......+...|..+++ ..+..+. ..+.++.+ .+..+.+.... | .....+...++ .|++++|++
T Consensus 216 ~it-~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 216 IIN-RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--EDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred CcC-HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--CCcchHHHhhhHHHHHcCCcc
Confidence 000 00011333336667888887 4555555 55666543 33333332221 1 14456677788 699999997
Q ss_pred ccc
Q 002655 466 EVN 468 (896)
Q Consensus 466 ~~~ 468 (896)
...
T Consensus 288 ~~~ 290 (305)
T TIGR00635 288 RTP 290 (305)
T ss_pred cCC
Confidence 653
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=3.6e-09 Score=114.27 Aligned_cols=275 Identities=13% Similarity=0.088 Sum_probs=155.4
Q ss_pred ccccchhHHHHHHHHHhhc---cCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITD---QEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
.+|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++... ..+ .++..+. ......+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~-----~~~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG-----VNI---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC-----CCe---EEEeccc-ccChHHHHH
Confidence 4689999999998877753 223456788999999999999999999863 221 1222111 111222333
Q ss_pred HHHHhCCCc----ccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhhhccCC
Q 002655 234 IGKRIGLSA----ESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCGSME 309 (896)
Q Consensus 234 i~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~ 309 (896)
++..++... ++....+ ....+.+...+.+.+..+|+|+..+...+.. .++ +.+-|..|||...+...+.
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHH
Confidence 333332211 0000000 1122334556666677777777655433221 111 2355666777544432211
Q ss_pred --CCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCCCChhHHHHHHHHhcCC
Q 002655 310 --ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVLSTS 387 (896)
Q Consensus 310 --~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~~~~~w~~~~~~l~~~ 387 (896)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+ ..|.... +..
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~---~~~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRV------RDFAQVK---GDG 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHc---CCC
Confidence 1356899999999999999988765432222 4568999999999996555444322 1221110 000
Q ss_pred CCcCCCChHHHHhHHhhccCCCCchhhhHHHh-hhcCCCCCcccchhhHHHHHHHcCCcchhhhhhHHHH-HHHHccccc
Q 002655 388 PEKFSGMEENVFARLKFSYDSLPNYIIRSCFL-YCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEGYTIIG-DLLRACLLE 465 (896)
Q Consensus 388 ~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~l~-~L~~~~Ll~ 465 (896)
.-. ...-......+...|..|++ ..+..+. ....|+.+ .+..+.+... +-...+.+++.++ .|++.+|++
T Consensus 237 ~I~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~-----lg~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 237 VIT-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAA-----LGEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred CCC-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHH-----HCCCcchHHHHhhHHHHHcCCcc
Confidence 000 00112344556777888887 4566664 66667655 3444443222 1124456666777 899999997
Q ss_pred cc
Q 002655 466 EV 467 (896)
Q Consensus 466 ~~ 467 (896)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 65
No 31
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=3.1e-09 Score=103.03 Aligned_cols=144 Identities=17% Similarity=0.271 Sum_probs=90.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcC-CCCEEEEEEeCCCCCHH---HHHHHHHHHhCCCcccccccCHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH-HFDVVIWGVVSREPKLD---KIQDAIGKRIGLSAESWMDKSLEEKALD 256 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 256 (896)
+++.|+|.+|+||||+++.++.......... .+...+|+......... .+...|..+.... .....+ .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES-----IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc-----hhhhHH---H
Confidence 5889999999999999999998874111111 14567777765544332 3444444433221 111111 1
Q ss_pred HHHH-hcCCcEEEEEeccCCccc---------ccccccCc-CC-CCCCcEEEEecCChhh---hccCCCCceEEeccCCh
Q 002655 257 ISNI-LSRKKFVLLLDDIWQPID---------LTELGIPL-QS-LNVSSKVVFTTRSLDV---CGSMEADEKIEVKYLVH 321 (896)
Q Consensus 257 l~~~-l~~k~~LlVlDdv~~~~~---------~~~~~~~l-~~-~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~~ 321 (896)
+... -..+++++|+|++++... +..+...+ .. ..++.+|+||+|.... .........+.+.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 257899999999976432 12222112 21 2468999999998766 33334456899999999
Q ss_pred HHHHHHHHHhh
Q 002655 322 DEAWRLFQEKV 332 (896)
Q Consensus 322 ~ea~~Lf~~~~ 332 (896)
++..+++.+..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=2.3e-11 Score=124.03 Aligned_cols=271 Identities=18% Similarity=0.192 Sum_probs=160.6
Q ss_pred CCcEEEcccCccccccchhhccCCCccEEecccccccc-cCCccccCCCcCcEEeccC-CCccccchh-hhcCCCCcEEe
Q 002655 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLN-KLPSGLSSLISLEHLDLSF-TVIRELPEE-MKALVNLRYLN 613 (896)
Q Consensus 537 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~~l~~L~~L~l~~-~~i~~lp~~-i~~L~~L~~L~ 613 (896)
.-..+.|..|.++.+|++.|+.+++||.||||+| .|+ .-|..|..|..|-.|-+.+ |+|+.+|+. ++.|..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4566889999999999999999999999999999 555 4588999999988877766 899999985 67899999999
Q ss_pred ccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchh---hhH---hhh
Q 002655 614 LEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWH---AFE---TFL 687 (896)
Q Consensus 614 l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~---~~~---~~~ 687 (896)
+.-|++..++.+.+..|++|..|.+++.. +.... ... +..+..++.+.+..+... .++ ...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~---------~~t---f~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNK-IQSIC---------KGT---FQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchh-hhhhc---------ccc---ccchhccchHhhhcCccccccccchhhhHH
Confidence 99999999999999999999999998831 11000 011 122222222222211100 000 000
Q ss_pred hc----cccccceeEEEecccCCCCcccccchhhccccceE---EeccCCceeeeeccccccccccccccCcccEEeecc
Q 002655 688 TF----QKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNF---LIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISD 760 (896)
Q Consensus 688 ~~----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L---~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 760 (896)
.. .....+.....+.... ...+....+ ...++.+ .-+.|......+... ...+++|++|+|++
T Consensus 214 a~~~ietsgarc~~p~rl~~~R-i~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~c-------f~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKR-INQEDARKF--LCSLESLPSRLSSEDFPDSICPAKC-------FKKLPNLRKLNLSN 283 (498)
T ss_pred hhchhhcccceecchHHHHHHH-hcccchhhh--hhhHHhHHHhhccccCcCCcChHHH-------HhhcccceEeccCC
Confidence 00 0000000000000000 000000000 0111111 111121111111111 13678888999988
Q ss_pred CCCCCCCc--ccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCcccccccC-CCCCCCCcc
Q 002655 761 CSRLKELT--WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLESIYF-DPLPFPQLK 837 (896)
Q Consensus 761 c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~~~~L~ 837 (896)
. +++.+. ++..+..|++|.|.. ++++.+-. ....++..|+.|+|.+. +++.+.+ ......+|.
T Consensus 284 N-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~-----------~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 284 N-KITRIEDGAFEGAAELQELYLTR-NKLEFVSS-----------GMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLS 349 (498)
T ss_pred C-ccchhhhhhhcchhhhhhhhcCc-chHHHHHH-----------HhhhccccceeeeecCC-eeEEEecccccccceee
Confidence 6 566654 678888888888877 56665532 23567888999999884 5555443 345566777
Q ss_pred EEEecCCC
Q 002655 838 EIEVTGCP 845 (896)
Q Consensus 838 ~L~i~~c~ 845 (896)
+|++-..|
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 77766544
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=6.3e-11 Score=121.99 Aligned_cols=279 Identities=18% Similarity=0.194 Sum_probs=130.0
Q ss_pred CCCcEEEcccCcccc--ccchhhccCCCccEEecccccccccC--CccccCCCcCcEEeccCC-Cccc--cchhhhcCCC
Q 002655 536 PHLRTLLLYRNRISM--ITDGFFQFMPSLKVLNLGFNIFLNKL--PSGLSSLISLEHLDLSFT-VIRE--LPEEMKALVN 608 (896)
Q Consensus 536 ~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L~~L~l~~~-~i~~--lp~~i~~L~~ 608 (896)
..|+.|.+.|+.-.. -...+..+++++..|++.+|..++.- -..-..+.+|++|++..| .|+. |-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356777777776221 12234567788888888888544431 111234667777777775 5552 2222334667
Q ss_pred CcEEecccc-cccc--ccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhhhHh
Q 002655 609 LRYLNLEYV-YLNR--LPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFET 685 (896)
Q Consensus 609 L~~L~l~~~-~l~~--lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~ 685 (896)
|.+|++++| .+.+ +.. ...++++++.+...+|..... +.
T Consensus 218 L~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l-------------------------------------e~ 259 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL-------------------------------------EA 259 (483)
T ss_pred HHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH-------------------------------------HH
Confidence 777777777 4433 111 123445555555555533221 11
Q ss_pred hhhccccccceeEEEecccCCCCcccccch-hhccccceEEeccCCcee-eeeccccccccccccccCcccEEeeccCCC
Q 002655 686 FLTFQKLLSCTESLELTKLYTPMSLNVLPL-AYMKHLKNFLIQNCAFEE-LKIENAVEIQNLVQRGFRSLHTVFISDCSR 763 (896)
Q Consensus 686 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~i~~~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 763 (896)
+........-+..+++..|...++.....+ ..+..|+.|..++|.... ..+..+. ...++|+.|.+.+|..
T Consensus 260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg-------~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG-------QHCHNLQVLELSGCQQ 332 (483)
T ss_pred HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh-------cCCCceEEEeccccch
Confidence 111111111122222223332222221111 123445555555554432 1111111 1345666666666655
Q ss_pred CCCCc--cc-ccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCcccccc-----cCCCCCCCC
Q 002655 764 LKELT--WL-VFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLESI-----YFDPLPFPQ 835 (896)
Q Consensus 764 l~~l~--~l-~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~~l-----~~~~~~~~~ 835 (896)
+++.. .+ .+.+.|+.|++.+|..+.+- .+.....++|.|+.|.+++|...+.- ......+..
T Consensus 333 fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~ 402 (483)
T KOG4341|consen 333 FSDRGFTMLGRNCPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG 402 (483)
T ss_pred hhhhhhhhhhcCChhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccc
Confidence 54432 12 24556666666665544332 01122445666666666666544432 112234455
Q ss_pred ccEEEecCCCCCCCCCCCCC--CCCCcceEEEcchh
Q 002655 836 LKEIEVTGCPKLKKLPLDST--RAMGHKIVVKGNIE 869 (896)
Q Consensus 836 L~~L~i~~c~~L~~lp~~~~--~~~l~~l~I~~~~~ 869 (896)
|+.+++++||.++.-.+... ..+|+.+++.+|+.
T Consensus 403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 66666666666654322222 25566666655553
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=2.7e-10 Score=123.76 Aligned_cols=108 Identities=27% Similarity=0.239 Sum_probs=59.6
Q ss_pred CCCCCCcEEEcccCccccc----cchhhccCCCccEEecccccccc-------cCCccccCCCcCcEEeccCCCcc-ccc
Q 002655 533 PNCPHLRTLLLYRNRISMI----TDGFFQFMPSLKVLNLGFNIFLN-------KLPSGLSSLISLEHLDLSFTVIR-ELP 600 (896)
Q Consensus 533 ~~~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~~-------~lp~~~~~l~~L~~L~l~~~~i~-~lp 600 (896)
..+.+|+.|.+.++.++.. ....+...+.|+.|+++++ .+. .++..+..+++|++|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 4455577777777765321 1122445666777777766 232 13345556667777777777665 344
Q ss_pred hhhhcCCC---CcEEeccccccccccc----cccCCC-CccceeeccCc
Q 002655 601 EEMKALVN---LRYLNLEYVYLNRLPL----QLLCNF-TKLQALRMLGC 641 (896)
Q Consensus 601 ~~i~~L~~---L~~L~l~~~~l~~lp~----~~i~~l-~~L~~L~l~~c 641 (896)
..+..+.+ |++|++++|.+...+. ..+..+ ++|+.|++.+|
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 44444444 7777777765542111 113444 66677776665
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=9.2e-10 Score=104.79 Aligned_cols=102 Identities=29% Similarity=0.417 Sum_probs=24.0
Q ss_pred cceeeeccccCccccCCCC-CCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccc-cCCCcCcEEecc
Q 002655 515 GFKRISLMENNITSLSAIP-NCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLS 592 (896)
Q Consensus 515 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~l~ 592 (896)
+.+.|++.++.+..+..+. .+.+|++|++++|.++.+.. +..+++|+.|++++| .++.++..+ ..+++|+.|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECc
Confidence 4455555555555554443 34555555555555554432 444555555555555 444443333 234555555555
Q ss_pred CCCccccc--hhhhcCCCCcEEecccccc
Q 002655 593 FTVIRELP--EEMKALVNLRYLNLEYVYL 619 (896)
Q Consensus 593 ~~~i~~lp--~~i~~L~~L~~L~l~~~~l 619 (896)
+|.|..+- ..+..+++|++|++.+|.+
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 55444332 1334455555555555533
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.5e-09 Score=101.82 Aligned_cols=115 Identities=35% Similarity=0.420 Sum_probs=41.6
Q ss_pred ccCccccCCCCCCCCCcEEEcccCccccccchhhc-cCCCccEEecccccccccCCccccCCCcCcEEeccCCCccccch
Q 002655 523 ENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQ-FMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPE 601 (896)
Q Consensus 523 ~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 601 (896)
.+.+...+...++.+++.|++.+|.++.+.. ++ .+.+|+.|+|++| .++.++ .+..+++|++|++++|.|+.++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3456666777788889999999999887754 44 5789999999999 888886 68899999999999999999987
Q ss_pred hh-hcCCCCcEEeccccccccccc-cccCCCCccceeeccCc
Q 002655 602 EM-KALVNLRYLNLEYVYLNRLPL-QLLCNFTKLQALRMLGC 641 (896)
Q Consensus 602 ~i-~~L~~L~~L~l~~~~l~~lp~-~~i~~l~~L~~L~l~~c 641 (896)
.+ ..+++|++|++++|.+.++.. ..+..+++|+.|++.++
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 66 469999999999997766543 22677899999999885
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=7.6e-10 Score=120.18 Aligned_cols=65 Identities=26% Similarity=0.168 Sum_probs=27.2
Q ss_pred hccCCCccEEecccccccccCCccccCCCc---CcEEeccCCCcc-----ccchhhhcC-CCCcEEeccccccc
Q 002655 556 FQFMPSLKVLNLGFNIFLNKLPSGLSSLIS---LEHLDLSFTVIR-----ELPEEMKAL-VNLRYLNLEYVYLN 620 (896)
Q Consensus 556 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~---L~~L~l~~~~i~-----~lp~~i~~L-~~L~~L~l~~~~l~ 620 (896)
+..+++|++|++++|......+..+..+.. |++|++++|.+. .+...+..+ ++|+.|++++|.+.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 334445555555554222222223322222 555555555443 122233344 45555555555433
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.76 E-value=8.2e-08 Score=97.65 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=94.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
..+.+.|+|++|+|||+||+++++... +. ...+.|+.+... ..... .+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~----~~-~~~~~y~~~~~~---~~~~~-----------------------~~~ 86 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL----LN-QRTAIYIPLSKS---QYFSP-----------------------AVL 86 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH----Hc-CCCeEEeeHHHh---hhhhH-----------------------HHH
Confidence 346789999999999999999999873 22 234566665311 00000 111
Q ss_pred HHhcCCcEEEEEeccCCc---ccccc-cccCcCCC-CCCcEEEE-ecCC---------hhhhccCCCCceEEeccCChHH
Q 002655 259 NILSRKKFVLLLDDIWQP---IDLTE-LGIPLQSL-NVSSKVVF-TTRS---------LDVCGSMEADEKIEVKYLVHDE 323 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~-~~gs~Iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e 323 (896)
+.+. +.-+||+||+|.. .+|+. +...+... ..|..+|+ |++. +++...+.....+++++++.++
T Consensus 87 ~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 87 ENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 1122 3358999999863 33442 22222211 23555654 4443 3445555566789999999999
Q ss_pred HHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHH
Q 002655 324 AWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGR 366 (896)
Q Consensus 324 a~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~ 366 (896)
.++++.+.+.......+ ++...-|++.+.|..-++..+-.
T Consensus 166 ~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 166 KIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 99999988864432333 45678888888877766554433
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.71 E-value=3.7e-07 Score=104.10 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=122.9
Q ss_pred cccccchhHHHHHHHHHhhcc---CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC--EEEEEEeCCCCCHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQ---EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD--VVIWGVVSREPKLDKI 230 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~--~~~wv~~s~~~~~~~~ 230 (896)
+..+.|||+++++|...|... .....++.|+|++|.|||++++.|.+............ .+++|.+....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 356889999999999988652 22346788999999999999999988763111112222 4677888777788899
Q ss_pred HHHHHHHhCCCcccccccCHHHHHHHHHHHhc---CCcEEEEEeccCCccc--ccccccCcC-CCCCCcEEEE--ecCCh
Q 002655 231 QDAIGKRIGLSAESWMDKSLEEKALDISNILS---RKKFVLLLDDIWQPID--LTELGIPLQ-SLNVSSKVVF--TTRSL 302 (896)
Q Consensus 231 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~--~~~~~~~l~-~~~~gs~Iiv--TtR~~ 302 (896)
+..|.+++...... ......+....+...+. +...+||||+|+.... -+.+...+. ....+++|++ +|...
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999888433211 22334445555555542 2346999999975321 011111111 1123555544 33322
Q ss_pred hh--------hccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHH-HHHHHHHHHcCCchhHHHHHHHHh
Q 002655 303 DV--------CGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDIL-ELAQTLARECCGLPLALKTIGRAM 368 (896)
Q Consensus 303 ~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~-~~~~~i~~~c~g~PLal~~~g~~L 368 (896)
+. ...++ ...+...|++.++-.+++..++.......+++.. -+|+.++...|-.=.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 21 11221 2346779999999999999988532211222222 233333333344455665554443
No 40
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.62 E-value=5.2e-08 Score=101.90 Aligned_cols=290 Identities=17% Similarity=0.169 Sum_probs=188.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHF-DVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
..+.+.++|.|||||||++-.+.. .. ..| +.+.++....-.+...+.-.+...++.+. .+-+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~-----~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~ 81 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA-----SEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTL 81 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh-----hhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHH
Confidence 458899999999999999999988 42 344 57777887777778888888887788754 2223344466
Q ss_pred HHHhcCCcEEEEEeccCCccc-ccccccCcCCCCCCcEEEEecCChhhhccCCCCceEEeccCChH-HHHHHHHHhhCCc
Q 002655 258 SNILSRKKFVLLLDDIWQPID-LTELGIPLQSLNVSSKVVFTTRSLDVCGSMEADEKIEVKYLVHD-EAWRLFQEKVGEA 335 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv~~~~~-~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~ 335 (896)
.....++|.++|+||..+..+ -......+..+...-.|+.|+|.... +.....+.+.+|+.. ++.++|...+...
T Consensus 82 ~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~ 158 (414)
T COG3903 82 VRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLV 158 (414)
T ss_pred HHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHh
Confidence 677789999999999866422 11111222233344578888886433 334567788888865 7999988766321
Q ss_pred c--cCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCCCCh---hHHHHHHHHhcCCCCcCCCChHHHHhHHhhccCCCC
Q 002655 336 T--LRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNP---DEWKYATKVLSTSPEKFSGMEENVFARLKFSYDSLP 410 (896)
Q Consensus 336 ~--~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~~~---~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 410 (896)
. ............+|.++..|.|++|...++..+.-... ....+-...+........--+......+.+||.-|.
T Consensus 159 ~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 159 ALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred ccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 1 11223335668999999999999999999877653211 112222222222211111113457788999999999
Q ss_pred chhhhHHHhhhcCCCCCcccchhhHHHHHHHcCCcc--hhhhhhHHHHHHHHccccccc---ccCeEEehHHHHHHHHHH
Q 002655 411 NYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVD--AFDEGYTIIGDLLRACLLEEV---NDNHVKMHDVIRDMALWI 485 (896)
Q Consensus 411 ~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~--~~~~~~~~l~~L~~~~Ll~~~---~~~~~~mHdlv~~~a~~~ 485 (896)
. -.+..|.-++.|...+... ...|.+-|-.. +.......+..++++++.... ....|+.-+-++.|+...
T Consensus 239 g-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 239 G-WERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred h-HHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8 5688999999998776543 34555555332 334455566778888887654 334556666666666554
Q ss_pred Hh
Q 002655 486 AC 487 (896)
Q Consensus 486 ~~ 487 (896)
..
T Consensus 314 L~ 315 (414)
T COG3903 314 LH 315 (414)
T ss_pred HH
Confidence 43
No 41
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.60 E-value=4.9e-07 Score=92.50 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 002655 162 QESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLS 241 (896)
Q Consensus 162 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 241 (896)
.+..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ......+++.++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~-----~~~~~~~~i~~~~~~~------~~------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAAE-----ERGKSAIYLPLAELAQ------AD------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHHH-----hcCCcEEEEeHHHHHH------hH-------
Confidence 345666676665543 567899999999999999999998763 2233455665432210 00
Q ss_pred cccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc---ccc-ccccCcCC-CCCCcEEEEecCChhh---------hcc
Q 002655 242 AESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI---DLT-ELGIPLQS-LNVSSKVVFTTRSLDV---------CGS 307 (896)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~-~~~~~l~~-~~~gs~IivTtR~~~v---------~~~ 307 (896)
..+...+.+ .-+||+||++... .|. .+...+.. ...+.++|+||+.... ...
T Consensus 82 -------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 -------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred -------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 011112222 2489999997643 222 22222211 1234578898875321 112
Q ss_pred CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHH
Q 002655 308 MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRA 367 (896)
Q Consensus 308 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~ 367 (896)
+.....+++.+++.++...++...+.......+ .+..+.|++.+.|.|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 222467899999999999998876532221222 355788888899999887766543
No 42
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=1.1e-06 Score=105.42 Aligned_cols=307 Identities=15% Similarity=0.211 Sum_probs=170.9
Q ss_pred ccchhHHHHHHHHHhhcc-CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC---HHHHHHHH
Q 002655 159 VVGQESMLDQVWRCITDQ-EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK---LDKIQDAI 234 (896)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~i 234 (896)
++||+.+++.+...+..- .+...++.+.|..|||||+|+++|..... +.+..|-...+-....... ..+..+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~--~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPIT--QQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHh--ccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 699999999999988764 33556999999999999999999998874 1112221111111111111 22233333
Q ss_pred HHHh-------------------CCCcccc--------------------cccCHHHH-----HHHHHHHh-cCCcEEEE
Q 002655 235 GKRI-------------------GLSAESW--------------------MDKSLEEK-----ALDISNIL-SRKKFVLL 269 (896)
Q Consensus 235 ~~~l-------------------~~~~~~~--------------------~~~~~~~~-----~~~l~~~l-~~k~~LlV 269 (896)
+.++ |...... .+.....+ ...+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3333 2111000 00011111 11222333 34699999
Q ss_pred Eecc-CCccc-ccccccCcCCCC----CCcEEEEecCCh----hhhccCCCCceEEeccCChHHHHHHHHHhhCCcccCC
Q 002655 270 LDDI-WQPID-LTELGIPLQSLN----VSSKVVFTTRSL----DVCGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRC 339 (896)
Q Consensus 270 lDdv-~~~~~-~~~~~~~l~~~~----~gs~IivTtR~~----~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 339 (896)
+||+ |-+.. +.-+........ ....|..+.... .+-........|.|.||+..+...+.....+...
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 9999 43321 111111110000 011233222221 1222223446899999999999999998887533
Q ss_pred CccHHHHHHHHHHHcCCchhHHHHHHHHhcCC------CChhHHHHHHHHhcCCCCcCCCChHHHHhHHhhccCCCCchh
Q 002655 340 HSDILELAQTLARECCGLPLALKTIGRAMAYK------KNPDEWKYATKVLSTSPEKFSGMEENVFARLKFSYDSLPNYI 413 (896)
Q Consensus 340 ~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 413 (896)
....+....|+++..|+|+-+..+-..+... .+...|..-...+. . .+..+++...+..-.+.||+ .
T Consensus 237 -~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~-~~~~~~vv~~l~~rl~kL~~-~ 309 (849)
T COG3899 237 -LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----I-LATTDAVVEFLAARLQKLPG-T 309 (849)
T ss_pred -cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----C-chhhHHHHHHHHHHHhcCCH-H
Confidence 1224568999999999999999998887763 33444443211111 1 11223466678888999998 7
Q ss_pred hhHHHhhhcCCCCCcccchhhHHHHHHHcCCcchhhhhhHHHHHHHHccccccc-------ccCeE---EehHHHHHHHH
Q 002655 414 IRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEGYTIIGDLLRACLLEEV-------NDNHV---KMHDVIRDMAL 483 (896)
Q Consensus 414 ~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~l~~L~~~~Ll~~~-------~~~~~---~mHdlv~~~a~ 483 (896)
.|..+...|++-..+ +.+.|...+-.. ....+....+.|....++-.. ..... -.|+.+++.+-
T Consensus 310 t~~Vl~~AA~iG~~F--~l~~La~l~~~~----~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 310 TREVLKAAACIGNRF--DLDTLAALAEDS----PALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAY 383 (849)
T ss_pred HHHHHHHHHHhCccC--CHHHHHHHHhhc----hHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHh
Confidence 899999888886544 445555554321 234445555555554444321 11122 47888888874
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.59 E-value=8.3e-07 Score=98.91 Aligned_cols=175 Identities=19% Similarity=0.170 Sum_probs=102.9
Q ss_pred ccccchhHHHHH---HHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 157 RTVVGQESMLDQ---VWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
.++||++..+.. +..++... ....+.++|++|+||||+|+.+++... ..| +.++.......-.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATD-----APF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhC-----CCE-----EEEecccccHHHHHH
Confidence 357888877666 77777655 567788999999999999999988752 333 222211111111111
Q ss_pred HHHHhCCCcccccccCHHHHHHHHHHH-hcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEE--ecCChhh--h-
Q 002655 234 IGKRIGLSAESWMDKSLEEKALDISNI-LSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVF--TTRSLDV--C- 305 (896)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv--TtR~~~v--~- 305 (896)
+ ....... ..+++.+|++|+++... ..+.+...+. .|..+++ ||.+... .
T Consensus 80 i-------------------i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 80 V-------------------IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred H-------------------HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 1 1111111 24578899999998642 2333322222 2444444 3444321 1
Q ss_pred ccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHH
Q 002655 306 GSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIG 365 (896)
Q Consensus 306 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g 365 (896)
........+.+.+++.++.++++.+.+.........-..+....|++.|+|.+..+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 111223678999999999999998866431100001224567889999999997665443
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=3.2e-09 Score=113.61 Aligned_cols=169 Identities=27% Similarity=0.315 Sum_probs=118.7
Q ss_pred cceeeeccccCccccCC-CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccC
Q 002655 515 GFKRISLMENNITSLSA-IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSF 593 (896)
Q Consensus 515 ~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 593 (896)
.....+++.|.+..+|. +..|..|..+.+..|.+..+|.. ++++..|.+|||+.| .+..+|..++.|+ |+.|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 34456677777777764 56677788888888888888776 677888888888888 7888888887766 88888888
Q ss_pred CCccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCcee
Q 002655 594 TVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLL 673 (896)
Q Consensus 594 ~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l 673 (896)
|+++.+|..++.+..|.+||.+.|.+..+|.. ++++.+|+.|.+... ++ ...+.++..|+ |..|
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn-~l-------------~~lp~El~~Lp-Li~l 216 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRN-HL-------------EDLPEELCSLP-LIRL 216 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhh-hh-------------hhCCHHHhCCc-eeee
Confidence 88888888888888888888888888888877 788888888877662 21 12344555443 4445
Q ss_pred EEEecchhhhHhhhhccccccceeEEEecccC
Q 002655 674 SFTFDSWHAFETFLTFQKLLSCTESLELTKLY 705 (896)
Q Consensus 674 ~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 705 (896)
+++.+....++. ....++.|+.|.|.++.
T Consensus 217 DfScNkis~iPv---~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 217 DFSCNKISYLPV---DFRKMRHLQVLQLENNP 245 (722)
T ss_pred ecccCceeecch---hhhhhhhheeeeeccCC
Confidence 555554444332 22235566777666554
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.58 E-value=5e-06 Score=94.65 Aligned_cols=182 Identities=20% Similarity=0.220 Sum_probs=110.2
Q ss_pred ccccchhHHHHHHHHHhhcc--CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ--EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
.+++|.+..++++.+|+..- ....+.+.|+|++|+||||+|+.+++... |+ ++-++.+...+... ...+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-------~~-~ielnasd~r~~~~-i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-------WE-VIELNASDQRTADV-IERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-------CC-EEEEcccccccHHH-HHHH
Confidence 45899999999999998752 12367899999999999999999998762 22 33344444332222 2222
Q ss_pred HHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCccc------ccccccCcCCCCCCcEEEEecCChh-hhc-
Q 002655 235 GKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPID------LTELGIPLQSLNVSSKVVFTTRSLD-VCG- 306 (896)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~gs~IivTtR~~~-v~~- 306 (896)
+....... .....++-+||+|+++.... +..+...+. ..+..||+|+.+.. ...
T Consensus 85 i~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 85 AGEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 22211000 00113678999999976422 333322222 22345666664322 111
Q ss_pred -cCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHh
Q 002655 307 -SMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAM 368 (896)
Q Consensus 307 -~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L 368 (896)
.-.....+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1123467899999999999988887754332233 4568899999999776554433333
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.9e-06 Score=96.72 Aligned_cols=196 Identities=16% Similarity=0.160 Sum_probs=112.7
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+... ....++ +..+......+.|..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLn---Ce~~~~-------~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALN---CETGVT-------SQPCGVCRACREIDE 84 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc---CccCCC-------CCCCcccHHHHHHhc
Confidence 458999999999999987662 235667999999999999999988763 111110 011111111111211
Q ss_pred HhCCCc---ccccccCHHHHHHHHHHH----hcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCChhhh-c
Q 002655 237 RIGLSA---ESWMDKSLEEKALDISNI----LSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSLDVC-G 306 (896)
Q Consensus 237 ~l~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~v~-~ 306 (896)
.-.... +.......++....+... ..++.-++|||+++... .+..+...+.......++|+||++..-. .
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 000000 000011122222222211 13455689999998753 3555544444444567888777764432 1
Q ss_pred c-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch-hHHHHHHH
Q 002655 307 S-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP-LALKTIGR 366 (896)
Q Consensus 307 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lal~~~g~ 366 (896)
. .+....+.+.+++.++..+.+.+.+.......+ .+....|++.++|.. -|+..+-.
T Consensus 165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 233468999999999999999888754432222 455788999998865 45555433
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.56 E-value=2.5e-09 Score=110.48 Aligned_cols=285 Identities=17% Similarity=0.202 Sum_probs=160.2
Q ss_pred cceeeeccccCccccCC----CCCCCCCcEEEcccCc-cccc-cchhhccCCCccEEecccccccccC--CccccCCCcC
Q 002655 515 GFKRISLMENNITSLSA----IPNCPHLRTLLLYRNR-ISMI-TDGFFQFMPSLKVLNLGFNIFLNKL--PSGLSSLISL 586 (896)
Q Consensus 515 ~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~L~L~~~~~~~~l--p~~~~~l~~L 586 (896)
.++.+++.+..-....+ ...|+++..|.+.+|. ++.. ...+-..+++|++|+|..|..++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45667776654433322 3688999999998886 3321 2233467899999999998666652 1234568899
Q ss_pred cEEeccCC-Cccc--cchhhhcCCCCcEEecccccccccccccc----CCCCccceeeccCccCCCCCccccccccCcch
Q 002655 587 EHLDLSFT-VIRE--LPEEMKALVNLRYLNLEYVYLNRLPLQLL----CNFTKLQALRMLGCSNYSGEEEDRVFFKDAEP 659 (896)
Q Consensus 587 ~~L~l~~~-~i~~--lp~~i~~L~~L~~L~l~~~~l~~lp~~~i----~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~ 659 (896)
.||++++| .|+. +-.-...+++|+.+.+++| ...+.+.+ +.+.-+-.+++.+|..+++. .
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-----------~ 285 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--LELELEALLKAAAYCLEILKLNLQHCNQLTDE-----------D 285 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc--ccccHHHHHHHhccChHhhccchhhhccccch-----------H
Confidence 99999998 5553 3333455666778877777 22222222 23334555666677555532 1
Q ss_pred hhhhhccCcCCceeEEEecchhhhHhhhhccccccceeEEEecccCCCCcccccch-hhccccceEEeccCCcee-eeec
Q 002655 660 FMKELLCLENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPL-AYMKHLKNFLIQNCAFEE-LKIE 737 (896)
Q Consensus 660 ~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~i~~~~~~~-l~~~ 737 (896)
.. ........|+.|...++...++.....+ .+.++|+.|.+++|.... ....
T Consensus 286 ~~--------------------------~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 286 LW--------------------------LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred HH--------------------------HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 01 1111122444444444444333332222 235677777777766432 1111
Q ss_pred cccccccccccccCcccEEeeccCCCCCCC--ccc-ccCCCCcEEeEecCccccccccCCcCccccccccccccCcccce
Q 002655 738 NAVEIQNLVQRGFRSLHTVFISDCSRLKEL--TWL-VFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKF 814 (896)
Q Consensus 738 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l--~~l-~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~ 814 (896)
.+. .+.+.|+.+++.+|....+- ..+ .++|.|+.|.++.|..+++... ..+.....+...|+.
T Consensus 340 ~l~-------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 340 MLG-------RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSCSLEGLEV 405 (483)
T ss_pred hhh-------cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccccccccce
Confidence 111 25667777777777554442 122 3567777777777766655411 011222455666777
Q ss_pred eeccCCcccccccC-CCCCCCCccEEEecCCCCCCCCCC
Q 002655 815 LCLKDLENLESIYF-DPLPFPQLKEIEVTGCPKLKKLPL 852 (896)
Q Consensus 815 L~l~~~~~L~~l~~-~~~~~~~L~~L~i~~c~~L~~lp~ 852 (896)
|.+++||.+.+-.. ....+++|+.+++.+|...++-|.
T Consensus 406 lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 406 LELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred eeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 77777776654322 234566777777777766665443
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.1e-08 Score=100.83 Aligned_cols=127 Identities=27% Similarity=0.420 Sum_probs=101.5
Q ss_pred cCcccceeeeccccCccccCC-CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEE
Q 002655 511 KDWEGFKRISLMENNITSLSA-IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHL 589 (896)
Q Consensus 511 ~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 589 (896)
..|+.++.++++.|.|..+.. ..-.|.+|.|++++|.+..+.. +..+++|..||||+| .+.++-..=.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 457788889999999888755 4556899999999999877765 678899999999998 666655444567788899
Q ss_pred eccCCCccccchhhhcCCCCcEEeccccccccccc-cccCCCCccceeeccCc
Q 002655 590 DLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPL-QLLCNFTKLQALRMLGC 641 (896)
Q Consensus 590 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~~i~~l~~L~~L~l~~c 641 (896)
.|++|.|+.+ +++++|.+|..||+++|++..+.. ..|++|+.|++|.+.++
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 9999998888 478999999999999997665543 23889999999988874
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.55 E-value=6.8e-07 Score=92.97 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=98.7
Q ss_pred cccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAI 234 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 234 (896)
..+++|-+..+.++ +..+ .+...-.||++|+||||||+.+..... ..|. .++... ...++
T Consensus 29 Q~HLlg~~~~lrr~---v~~~--~l~SmIl~GPPG~GKTTlA~liA~~~~-----~~f~-----~~sAv~~gvkdl---- 89 (436)
T COG2256 29 QEHLLGEGKPLRRA---VEAG--HLHSMILWGPPGTGKTTLARLIAGTTN-----AAFE-----ALSAVTSGVKDL---- 89 (436)
T ss_pred hHhhhCCCchHHHH---HhcC--CCceeEEECCCCCCHHHHHHHHHHhhC-----CceE-----EeccccccHHHH----
Confidence 34455555444444 4444 678888999999999999999988752 4442 222211 11222
Q ss_pred HHHhCCCcccccccCHHHHHHHH-HHHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE--ecCChhhh---c
Q 002655 235 GKRIGLSAESWMDKSLEEKALDI-SNILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF--TTRSLDVC---G 306 (896)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv--TtR~~~v~---~ 306 (896)
.+..+.- .....+++.+|++|.|..- .+-+.+ +|....|.-|+| ||-|+... .
T Consensus 90 ----------------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 90 ----------------REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred ----------------HHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 1222222 2233589999999999763 222322 444556776665 55554331 1
Q ss_pred cCCCCceEEeccCChHHHHHHHHHhhCCcccC---CCccH-HHHHHHHHHHcCCchhH
Q 002655 307 SMEADEKIEVKYLVHDEAWRLFQEKVGEATLR---CHSDI-LELAQTLARECCGLPLA 360 (896)
Q Consensus 307 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~---~~~~~-~~~~~~i~~~c~g~PLa 360 (896)
..+...++++++|+.++-.+++.+.+...... ....+ ++....+++.++|---+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 12345789999999999999998844221100 11112 34567788888887643
No 50
>PTZ00202 tuzin; Provisional
Probab=98.55 E-value=3.1e-06 Score=89.72 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=98.2
Q ss_pred cccccchhHHHHHHHHHhhccC-CCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQE-KNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
.+.|+||+.++.++...|.+.+ ...+++.|+|++|+|||||++.+.... . ...++.-.. +..++++.+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l------~---~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE------G---MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC------C---ceEEEECCC--CHHHHHHHH
Confidence 4689999999999999997542 234688999999999999999998664 2 123333222 679999999
Q ss_pred HHHhCCCcccccccCHHHHHHHHHHHh-----c-CCcEEEEEeccCCccccccc---ccCcCCCCCCcEEEEecCChhhh
Q 002655 235 GKRIGLSAESWMDKSLEEKALDISNIL-----S-RKKFVLLLDDIWQPIDLTEL---GIPLQSLNVSSKVVFTTRSLDVC 305 (896)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~IivTtR~~~v~ 305 (896)
+.+||.+.. ....++...|.+.+ . +++.+||+-= .+-..+..+ ...+.....-|.|++----+...
T Consensus 330 L~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 330 VKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 999998532 22233333333322 3 5666776632 111111111 01122223446666644333221
Q ss_pred cc---CCCCceEEeccCChHHHHHHHHHhh
Q 002655 306 GS---MEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 306 ~~---~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
.. ...-..|.+++++.++|.++-.+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11 1112468899999999998876654
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.5e-08 Score=103.80 Aligned_cols=208 Identities=19% Similarity=0.193 Sum_probs=114.5
Q ss_pred CCCCCCcEEEcccCccccccc-hhhccCCCccEEeccccccccc---CCccccCCCcCcEEeccCCCccccchh--hhcC
Q 002655 533 PNCPHLRTLLLYRNRISMITD-GFFQFMPSLKVLNLGFNIFLNK---LPSGLSSLISLEHLDLSFTVIRELPEE--MKAL 606 (896)
Q Consensus 533 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~l~~~~i~~lp~~--i~~L 606 (896)
+++++||...|.++.....+. .....|++++.|||++| .+.. +-..+..|++|+.|+++.|.+.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 566777888887777654442 34566777888888777 3322 233455677777777777765533221 2245
Q ss_pred CCCcEEecccccccccc-ccccCCCCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhhhHh
Q 002655 607 VNLRYLNLEYVYLNRLP-LQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFET 685 (896)
Q Consensus 607 ~~L~~L~l~~~~l~~lp-~~~i~~l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~ 685 (896)
.+|+.|.++.|.+..-. ......+++|+.|.+..++.+...
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-------------------------------------- 238 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK-------------------------------------- 238 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee--------------------------------------
Confidence 56666666666443110 011234556666666553211100
Q ss_pred hhhccccccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccccCcccEEeeccCCCCC
Q 002655 686 FLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLK 765 (896)
Q Consensus 686 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 765 (896)
......+..|+.|+|.++.............++.|..|+++.|....+..-..... -....|++|+.|++..++ +.
T Consensus 239 -~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~--~kt~~f~kL~~L~i~~N~-I~ 314 (505)
T KOG3207|consen 239 -ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL--DKTHTFPKLEYLNISENN-IR 314 (505)
T ss_pred -cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccch--hhhcccccceeeecccCc-cc
Confidence 00111233566666666554444333456667888888888887766321111000 011368889999988864 44
Q ss_pred CCc---ccccCCCCcEEeEec
Q 002655 766 ELT---WLVFAPNLKNIDVQN 783 (896)
Q Consensus 766 ~l~---~l~~l~~L~~L~L~~ 783 (896)
+++ .+..+++|+.|.+..
T Consensus 315 ~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccccchhhccchhhhhhccc
Confidence 443 455667777777543
No 52
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=2.8e-07 Score=84.47 Aligned_cols=120 Identities=23% Similarity=0.173 Sum_probs=80.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
-+++.|.|+.|+||||++++++.+. . ....+++++..+....... ..+ ..+.+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~----~--~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~ 56 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL----L--PPENILYINFDDPRDRRLA------------------DPD-LLEYFLE 56 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh----c--ccccceeeccCCHHHHHHh------------------hhh-hHHHHHH
Confidence 3689999999999999999998876 1 3355677765543211000 000 2223333
Q ss_pred HhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhhhcc------CCCCceEEeccCChHHH
Q 002655 260 ILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCGS------MEADEKIEVKYLVHDEA 324 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l~~L~~~ea 324 (896)
....++.+|+||++....+|......+.+..+..+|++|+.+...... .+....+++.||+..|-
T Consensus 57 ~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 57 LIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 334478899999999988888877666665567899999987666422 12234679999998773
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=4.8e-07 Score=83.62 Aligned_cols=119 Identities=23% Similarity=0.285 Sum_probs=80.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
+.+.+.|+|.+|+|||++++.+.+..........-..++|+.+....+...+...|+++++..... ..+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 457899999999999999999999874211111245678999988889999999999999876532 356777778888
Q ss_pred HHhcCCcE-EEEEeccCCc-c--cccccccCcCCCCCCcEEEEecCC
Q 002655 259 NILSRKKF-VLLLDDIWQP-I--DLTELGIPLQSLNVSSKVVFTTRS 301 (896)
Q Consensus 259 ~~l~~k~~-LlVlDdv~~~-~--~~~~~~~~l~~~~~gs~IivTtR~ 301 (896)
+.+...+. +||+||++.. . .++.+.. +.. ..+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 88876554 9999999764 2 1222211 112 556677777664
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.47 E-value=2e-05 Score=91.65 Aligned_cols=202 Identities=13% Similarity=0.098 Sum_probs=114.6
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCC---CEEEEEEeCCC---CCHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHF---DVVIWGVVSRE---PKLDKI 230 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f---~~~~wv~~s~~---~~~~~~ 230 (896)
+.++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++... ....+ ...-|+.+... .+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~---~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAK---KLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhh---hccCCcccCCCCeEEEechhccCCHHHH
Confidence 45899999999988877544 456799999999999999999987652 11222 12234443221 122222
Q ss_pred HHHH---------------HHHhCCCc----------------ccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--c
Q 002655 231 QDAI---------------GKRIGLSA----------------ESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--I 277 (896)
Q Consensus 231 ~~~i---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~ 277 (896)
...+ +...+... ++ ...-....+..+.+.+.++++.++-|+.|.. .
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDE-i~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDE-IGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEec-cccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 1111 11112110 00 0111123466778888888888887766653 3
Q ss_pred cccccccCcCCCCCCcEEEE--ecCChhhhc-cC-CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHH
Q 002655 278 DLTELGIPLQSLNVSSKVVF--TTRSLDVCG-SM-EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARE 353 (896)
Q Consensus 278 ~~~~~~~~l~~~~~gs~Iiv--TtR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~ 353 (896)
.|+.+...+....+...|++ ||++..... .+ .....+.+.+++.+|.++++.+.+.......+ .+....|.+.
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~y 384 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARY 384 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHC
Confidence 46666555544444444555 566543211 11 12346788999999999999987653321111 3345555555
Q ss_pred cCCchhHHHHHHHH
Q 002655 354 CCGLPLALKTIGRA 367 (896)
Q Consensus 354 c~g~PLal~~~g~~ 367 (896)
+..-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 54445566555443
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=9e-06 Score=88.92 Aligned_cols=190 Identities=16% Similarity=0.182 Sum_probs=107.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++... ...... ..++........+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~---c~~~~~-------~~pc~~c~~c~~~~~ 84 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLN---CQNGIT-------SNPCRKCIICKEIEK 84 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhc---CCCCCC-------CCCCCCCHHHHHHhc
Confidence 468999999999988887652 335678999999999999999998762 100000 000000011111111
Q ss_pred HhCCCccc---ccccCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCChh-hh
Q 002655 237 RIGLSAES---WMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSLD-VC 305 (896)
Q Consensus 237 ~l~~~~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~ 305 (896)
........ ......++ ...+.+.+ .+++-++|+|+++... .+..+...+.......++|++|.+.+ +.
T Consensus 85 ~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred CCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 10000000 00011111 11222221 2455699999997653 34445444444445667777765433 32
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
.. .+....+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.|-.+
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 21 123468899999999999988876643321122 345788999999988543
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=5.2e-06 Score=90.76 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=108.6
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD-VVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...+. ..+.++++...+ .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~----~~~~~~~~~~i~~~~~~~--~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELY----GDPWENNFTEFNVADFFD--QGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhc----CcccccceEEechhhhhh--cchhhhh
Confidence 46899999999999988766 555788999999999999999998763 12222 234444432110 0000000
Q ss_pred H------HhCCCcccccccCHHHHHHHHHHH----h--cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCC
Q 002655 236 K------RIGLSAESWMDKSLEEKALDISNI----L--SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRS 301 (896)
Q Consensus 236 ~------~l~~~~~~~~~~~~~~~~~~l~~~----l--~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~ 301 (896)
. .++... . ......+....+.+. . .+.+-+||+||+.... ....+...+......+++|+||.+
T Consensus 87 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 87 EDPRFAHFLGTDK-R-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred cCcchhhhhhhhh-h-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 0 000000 0 000111122222111 1 2345589999997542 122232223223345678877754
Q ss_pred hh-hhccC-CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHH
Q 002655 302 LD-VCGSM-EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKT 363 (896)
Q Consensus 302 ~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~ 363 (896)
.. +...+ .....+++.+++.++...++.+.+.......+ .+....+++.++|.+-.+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 32 22211 23457889999999999999887654332222 45688889999887655443
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=4.8e-06 Score=89.37 Aligned_cols=179 Identities=14% Similarity=0.186 Sum_probs=113.3
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhh-hhcCCCCEEEEEEe-CCCCCHHHHHHHHH
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIE-QRQHHFDVVIWGVV-SREPKLDKIQDAIG 235 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~f~~~~wv~~-s~~~~~~~~~~~i~ 235 (896)
+++|-+..++.+..++..+. -.+...++|+.|+||||+|+.++...-.. ....++|...|... +......++ +++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 57899988999999987652 34577899999999999999999875211 12345665555442 222222232 2222
Q ss_pred HHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCC--cccccccccCcCCCCCCcEEEEecCChhhhc-c-CCCC
Q 002655 236 KRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQ--PIDLTELGIPLQSLNVSSKVVFTTRSLDVCG-S-MEAD 311 (896)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~-~-~~~~ 311 (896)
+.+.... ..+++-++|+|+++. ...+..+...+.....++.+|++|.+.+... . ....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 2221110 124555667777644 4456666666665567888888887654321 1 2335
Q ss_pred ceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHH
Q 002655 312 EKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKT 363 (896)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~ 363 (896)
..+.+.++++++....+.+...+.. .+.+..++..++|.|.-+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 6889999999999888876643211 23367889999999875543
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.6e-06 Score=82.07 Aligned_cols=123 Identities=21% Similarity=0.148 Sum_probs=73.3
Q ss_pred cchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 002655 160 VGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIG 239 (896)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 239 (896)
+|++..+..+...+... ..+.+.|+|++|+|||++|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF-----RPGAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhh-----cCCCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 47888899998888765 557899999999999999999999873 222356666655433222111111000
Q ss_pred CCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc-----ccccccccCcCC---CCCCcEEEEecCChh
Q 002655 240 LSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP-----IDLTELGIPLQS---LNVSSKVVFTTRSLD 303 (896)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~---~~~gs~IivTtR~~~ 303 (896)
............++.++|+||++.. ..+......... ...+..||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223457789999999853 122222222211 135778888887643
No 59
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2e-05 Score=85.06 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=129.3
Q ss_pred ccccchhHHHHHHHHHhhcc--CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ--EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
..+.+|+++++++...|..- .....-+.|+|.+|+|||+.++.|.+... ......+ +++|++-...+..+++..|
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~--~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELE--ESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHH--hhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 34899999999999887652 22334489999999999999999999984 1112222 8899999999999999999
Q ss_pred HHHhCCCcccccccCHHHHHHHHHHHhc--CCcEEEEEeccCCcccc--cccccCcCCCC-CCcEEE--EecCChhhh--
Q 002655 235 GKRIGLSAESWMDKSLEEKALDISNILS--RKKFVLLLDDIWQPIDL--TELGIPLQSLN-VSSKVV--FTTRSLDVC-- 305 (896)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~~~l~~~~-~gs~Ii--vTtR~~~v~-- 305 (896)
+++++.... ......+....+.+.+. ++.++||||+++....- +-+-..+.... ..++|+ ..+-+....
T Consensus 94 ~~~~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 94 LNKLGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHcCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 999963221 34566677777777764 58899999999764221 11111111111 144443 333333222
Q ss_pred ------ccCCCCceEEeccCChHHHHHHHHHhhCC--cccCCCccHHHHHHHHHHHcCC-chhHHHHH
Q 002655 306 ------GSMEADEKIEVKYLVHDEAWRLFQEKVGE--ATLRCHSDILELAQTLARECCG-LPLALKTI 364 (896)
Q Consensus 306 ------~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~g-~PLal~~~ 364 (896)
..++. ..+..+|-+.+|-.+.+..++.. ......+...+++..++..-+| .=.|+..+
T Consensus 172 ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 22222 34788999999999999888732 1223344555555555555554 33454444
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.41 E-value=4.1e-06 Score=85.38 Aligned_cols=148 Identities=14% Similarity=0.038 Sum_probs=89.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
....+.|+|..|+|||+|++++++... +. ...+.++.+.+ ....+. + ..
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~----~~-~~~~~y~~~~~------~~~~~~----------------~----~~ 88 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAE----QA-GRSSAYLPLQA------AAGRLR----------------D----AL 88 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH----Hc-CCcEEEEeHHH------hhhhHH----------------H----HH
Confidence 345799999999999999999998863 22 23556665322 111110 0 11
Q ss_pred HHhcCCcEEEEEeccCCcc---cccc-cccCcCC-CCCCcEEEEecCChhh---------hccCCCCceEEeccCChHHH
Q 002655 259 NILSRKKFVLLLDDIWQPI---DLTE-LGIPLQS-LNVSSKVVFTTRSLDV---------CGSMEADEKIEVKYLVHDEA 324 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~~~---~~~~-~~~~l~~-~~~gs~IivTtR~~~v---------~~~~~~~~~~~l~~L~~~ea 324 (896)
+.+ .+.-+||+||+.... .|.. +...+.. ...|..||+|++...- ...+.....+++++++.++-
T Consensus 89 ~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 89 EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 111 233589999997532 2322 2111111 1246679999985322 22233356889999999999
Q ss_pred HHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 325 WRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 325 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
.+++.+++.......+ .+....|++.++|-.-.+
T Consensus 168 ~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 168 AAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 9999987643322222 455778888887666544
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1.3e-05 Score=90.36 Aligned_cols=196 Identities=16% Similarity=0.163 Sum_probs=109.1
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+........... .. .+..+........|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~-g~----~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG-GI----TAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc-cC----CCCCCcccHHHHHHHc
Confidence 458999999999999988762 23566899999999999999998877310000000 00 0001111111111111
Q ss_pred H-----hCCCcccccccCHHHHHHHHHHH----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecC-Chhh
Q 002655 237 R-----IGLSAESWMDKSLEEKALDISNI----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTR-SLDV 304 (896)
Q Consensus 237 ~-----l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR-~~~v 304 (896)
. +.+... .....++..+.+... ..++.-++|+|+++.. ..+..+...+.....+.++|++|. ...+
T Consensus 90 G~hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 90 GRFVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred CCCCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 0 000000 011222222222221 2456679999999864 344445444443334556555554 4444
Q ss_pred hcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHH
Q 002655 305 CGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKT 363 (896)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~ 363 (896)
... .+....+.+..++.++..+.+.+.+........ .+....|++.++|.|.....
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 322 123468899999999999998877653321211 34468899999999964443
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.2e-05 Score=90.87 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=109.2
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++... ... ++. ...++.....+.|..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~Ln---C~~------~~~-~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLN---CET------GVT-STPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhC---CCc------CCC-CCCCccCHHHHHHhc
Confidence 458999999999999988662 246778999999999999999988762 100 000 011111111111111
Q ss_pred HhCCCc---ccccccCHHHHHHHHHH----HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCChh-hh-
Q 002655 237 RIGLSA---ESWMDKSLEEKALDISN----ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSLD-VC- 305 (896)
Q Consensus 237 ~l~~~~---~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~-v~- 305 (896)
.-...- +.......++....+.. -..+++-++|+|+|+.. .....+...+.....+.++|++|.+.. +.
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000000 00001112222111111 12356679999999864 234444434433334567777776532 21
Q ss_pred ccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 306 GSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 306 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
........+++.+++.++..+.+.+.+........ .+....|++.++|.+-.+.
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 11234578999999999999999887754332222 4457889999999874443
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.6e-05 Score=89.66 Aligned_cols=192 Identities=16% Similarity=0.101 Sum_probs=108.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|-+..++.+..++..+. -.+.+.++|++|+||||+|+.+++... ..+.+...+|.+.+... ..........
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~---c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVN---CSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHh---ccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 358999998888888887762 235668999999999999999998873 11122222333221100 0000000000
Q ss_pred HhCCCcccccccCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecC-ChhhhccC
Q 002655 237 RIGLSAESWMDKSLEEKALDISNI-----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTR-SLDVCGSM 308 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR-~~~v~~~~ 308 (896)
.++.. .....++ +..+.+. ..+++-++|+|+++.. ..+..+...+........+|++|. ...+...+
T Consensus 89 el~~~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 89 EIDAA----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred Eeccc----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 00000 0111111 1122222 2346679999999754 335555444443334555555554 33332222
Q ss_pred -CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 309 -EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 309 -~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
.....+++.+++.++..+.+.+.+.......+ .+....|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 23568999999999999999987754332222 456888999999988544
No 64
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=4.8e-07 Score=70.56 Aligned_cols=60 Identities=35% Similarity=0.522 Sum_probs=39.7
Q ss_pred CCCcEEEcccCccccccchhhccCCCccEEecccccccccCC-ccccCCCcCcEEeccCCCc
Q 002655 536 PHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLP-SGLSSLISLEHLDLSFTVI 596 (896)
Q Consensus 536 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i 596 (896)
++|++|++++|.++.+++..|.++++|++|++++| .+..+| ..|..+++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45667777777777777666777777777777766 455543 4566677777777766653
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=3.7e-07 Score=102.11 Aligned_cols=119 Identities=30% Similarity=0.423 Sum_probs=79.9
Q ss_pred eeccccCc-cccCCCCCCCCCcEEEcccCccccccchhhccCC-CccEEecccccccccCCccccCCCcCcEEeccCCCc
Q 002655 519 ISLMENNI-TSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMP-SLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVI 596 (896)
Q Consensus 519 l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i 596 (896)
+....+.+ .........+.+..|.+.++.++.+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 44444444 3334445556777777777777777664 34443 7777777777 6777766777777777777777777
Q ss_pred cccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccC
Q 002655 597 RELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLG 640 (896)
Q Consensus 597 ~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~ 640 (896)
..+|...+.+.+|+.|+++++.+..+|.. +..+..|++|.+.+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~ 218 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSN 218 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcC
Confidence 77777766777777777777777777764 34455577776665
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.34 E-value=1.6e-06 Score=85.70 Aligned_cols=47 Identities=26% Similarity=0.447 Sum_probs=33.9
Q ss_pred ccchhHHHHHHHHHhhc-cCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 159 VVGQESMLDQVWRCITD-QEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 159 ~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
||||+++++++.+.+.. .....+.+.|+|++|+|||+|+++++....
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 79999999999999942 233568999999999999999999999885
No 67
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.33 E-value=1.4e-06 Score=88.71 Aligned_cols=92 Identities=21% Similarity=0.223 Sum_probs=62.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC--CCHHHHHHHH-----HHHhCCCcccccccCHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE--PKLDKIQDAI-----GKRIGLSAESWMDKSLE 251 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~ 251 (896)
....++|+|++|+|||||++.+++... ..+|+.++|+.+... .++.++++.+ +.+++.+... ...-..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~----~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~ 89 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT----KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAE 89 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc----cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHH
Confidence 447889999999999999999999983 348999999997777 7899999999 3333321100 000011
Q ss_pred HHHHHHHHH-hcCCcEEEEEeccCC
Q 002655 252 EKALDISNI-LSRKKFVLLLDDIWQ 275 (896)
Q Consensus 252 ~~~~~l~~~-l~~k~~LlVlDdv~~ 275 (896)
........+ -.+++.++++|++..
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHH
Confidence 111222222 257999999999965
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.33 E-value=4.3e-06 Score=89.96 Aligned_cols=180 Identities=13% Similarity=0.115 Sum_probs=103.9
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD-VVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.+++|.++.++.+..++..+ ..+.+.++|++|+||||+|+.+++... ...|. .++-+..+....... .+.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~----~~~~~~~~~eln~sd~~~~~~-vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELL----GPNYKEAVLELNASDDRGIDV-VRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHh----cccCccceeeecccccccHHH-HHHHH
Confidence 35789998888888777665 455678999999999999999998862 22232 122222222222221 11111
Q ss_pred HHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCCh-hhhccC-CCC
Q 002655 236 KRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSL-DVCGSM-EAD 311 (896)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~ 311 (896)
+.+..... ..-.++.-++++|+++... ....+...+......+++|+++... .+...+ ...
T Consensus 86 ~~~~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 86 KMFAQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 11100000 0002456799999998642 2222222222223456777766442 221111 123
Q ss_pred ceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 312 EKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
..+++++++.++....+...+.......+ .+....|++.++|-.-.+
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 57899999999999999887754332222 345788899998876433
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.33 E-value=1.3e-05 Score=86.91 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=104.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEe--CCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVV--SREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i 234 (896)
.+++|+++.++.+..++... ..+.+.++|.+|+||||+|+.+++... ...+. ..++.+ +.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~----~~~~~-~~~i~~~~~~~~~~~~~~~~i 89 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELY----GEDWR-ENFLELNASDERGIDVIRNKI 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHc----CCccc-cceEEeccccccchHHHHHHH
Confidence 35899999999999998765 456679999999999999999998863 22222 122222 2221111111111
Q ss_pred HHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCCh-hhhccC-CC
Q 002655 235 GKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSL-DVCGSM-EA 310 (896)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~-~~ 310 (896)
........ .....+-+|++|+++... ....+...+......+++|+++... .+.... ..
T Consensus 90 ~~~~~~~~-----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 90 KEFARTAP-----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHhcCC-----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11000000 001345689999986532 2223332233333456777766432 221111 12
Q ss_pred CceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 311 DEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 311 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
...+++.+++.++....+...+.......+ .+....+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 346899999999999988887754332222 445888899999987653
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7.8e-06 Score=95.18 Aligned_cols=183 Identities=21% Similarity=0.187 Sum_probs=108.6
Q ss_pred ccccchhHHHHHHHHHhhccCCCcc-EEEEEcCCCCcHHHHHHHHHhhhhhhhhc----------------CCCCEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRG-IIGLYGTGGVGKTTLLKQVNNKFCIEQRQ----------------HHFDVVIWG 219 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv 219 (896)
.++||-+..++.+.+++..+ ++. .+.++|+.|+||||+|+.+++........ ..|.-++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 45899999999999888766 454 45799999999999999999887311000 001111222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH-HHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEE
Q 002655 220 VVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS-NILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVV 296 (896)
Q Consensus 220 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Ii 296 (896)
..+....+. ...++...+. .-..+++-++|+|++... .....+...+.......++|
T Consensus 94 dAas~~kVD--------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 94 DAASRTKVD--------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred ccccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 111101111 1111111111 112467789999999764 34444444443333456666
Q ss_pred EecCC-hhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHH
Q 002655 297 FTTRS-LDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTI 364 (896)
Q Consensus 297 vTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~ 364 (896)
++|.+ ..+... ......|.+.+|+.++..+.+.+.+....... ..+....|++.++|.|- |+..+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 65544 333221 22347899999999999999988764322111 24557889999999885 44443
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.1e-05 Score=87.97 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=104.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhc----------------CCCCEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQ----------------HHFDVVIWG 219 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv 219 (896)
.++||.+.....+...+..+ .. +.+.++|++|+||||+|+.+++........ ..+..++.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 45899988888887777765 44 567899999999999999998876210000 000011222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE
Q 002655 220 VVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF 297 (896)
Q Consensus 220 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv 297 (896)
..+.......+ +.|.+.... .-..+++-++|+|+++.. .....+...+........+|+
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 22111111111 111111100 012346679999999753 233344333433233344444
Q ss_pred ecCC-hhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCC-chhHHHHHHHHh
Q 002655 298 TTRS-LDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCG-LPLALKTIGRAM 368 (896)
Q Consensus 298 TtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~PLal~~~g~~L 368 (896)
+|.+ ..+... ......+++.+++.++....+.+.+.......+ .+....|++.++| .+.|+..+-...
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4433 333222 123468899999999999998887743321222 3457778887754 467776665533
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.31 E-value=7.7e-06 Score=83.53 Aligned_cols=171 Identities=12% Similarity=0.098 Sum_probs=98.9
Q ss_pred cccchh-HHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 158 TVVGQE-SMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 158 ~~vGr~-~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++|.. ..+..+.++.... ..+.+.|+|++|+|||+|++.+++... ..-..+.++.+.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~v~y~~~~~~~~---------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELS-----QRGRAVGYVPLDKRAW---------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEEEHHHHhh----------
Confidence 344632 2334444443333 446899999999999999999998863 1224556665532100
Q ss_pred HhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc---ccccccc-cCcCC-CCCC-cEEEEecCChh-------
Q 002655 237 RIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP---IDLTELG-IPLQS-LNVS-SKVVFTTRSLD------- 303 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~-~~l~~-~~~g-s~IivTtR~~~------- 303 (896)
...+.. +.+.. --+|++||+... ..|+... ..+.. ...| .++|+||+...
T Consensus 87 ------------~~~~~~----~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 87 ------------FVPEVL----EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred ------------hhHHHH----HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 001111 11111 247899999653 3343221 11211 1123 47999987542
Q ss_pred --hhccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHH
Q 002655 304 --VCGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIG 365 (896)
Q Consensus 304 --v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g 365 (896)
....+....++++++++.++-.+++.+++.......+ ++...-|++.+.|..-++..+-
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 2334455678999999999999998876643322222 4567788888887665554443
No 73
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.29 E-value=9.4e-08 Score=102.64 Aligned_cols=128 Identities=24% Similarity=0.392 Sum_probs=99.2
Q ss_pred ccCcccceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEE
Q 002655 510 IKDWEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHL 589 (896)
Q Consensus 510 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L 589 (896)
+..+..+..++++.|.+..+|.-...--|++|.+++|+++.+|+. ++....|..||.+.| .+..+|..++.+..|+.|
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHH
Confidence 344556777778888877776533334488888888888888887 567888888888888 788888888888888888
Q ss_pred eccCCCccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccCc
Q 002655 590 DLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGC 641 (896)
Q Consensus 590 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~c 641 (896)
+++.|.+..+|..++. -.|..||++.|++..+|.. |.+|+.|++|.+.++
T Consensus 195 ~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred HHhhhhhhhCCHHHhC-CceeeeecccCceeecchh-hhhhhhheeeeeccC
Confidence 8888888888888884 3678888888888888876 788888888887763
No 74
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=1.4e-07 Score=93.17 Aligned_cols=109 Identities=28% Similarity=0.315 Sum_probs=96.0
Q ss_pred cccceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEecc
Q 002655 513 WEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLS 592 (896)
Q Consensus 513 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 592 (896)
.++++.|+++.|.+..+.++..+++|..|++++|.++.+.. +-.++-+.+.|.|++| .++.+. .+++|+.|.+||++
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLS 382 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhh-hHhhhh-hhHhhhhheecccc
Confidence 45899999999999999999999999999999999877654 3566889999999999 788874 89999999999999
Q ss_pred CCCccccc--hhhhcCCCCcEEeccccccccccc
Q 002655 593 FTVIRELP--EEMKALVNLRYLNLEYVYLNRLPL 624 (896)
Q Consensus 593 ~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp~ 624 (896)
+|+|..+. .+|++|+.|+++.+.+|.+..+|.
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 99999775 479999999999999998777775
No 75
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.5e-05 Score=89.22 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=105.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.... ..... +..+ ......+.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC---~~~~~---~~pC----g~C~sCr~i~~ 84 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNC---ENAQH---GEPC----GVCQSCTQIDA 84 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcc---cCCCC---CCCC----cccHHHHHHhc
Confidence 458999999999999988761 2356789999999999999999887521 10000 0000 00000111100
Q ss_pred H-----hCCCcccccccCHHHHHHHHHH----HhcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCChh-h
Q 002655 237 R-----IGLSAESWMDKSLEEKALDISN----ILSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSLD-V 304 (896)
Q Consensus 237 ~-----l~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v 304 (896)
. +.+.. ......++....+.. -..+++-++|+|++.... ....+...+.......++|++|.+.. +
T Consensus 85 g~~~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 85 GRYVDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred cCccceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 0 00000 001112222111111 123566799999997643 23333333333334566776665432 2
Q ss_pred hcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 305 CGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
... .+....+.+.+++.++....+.+.+........ .+....|++.++|.+.-+.
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHH
Confidence 211 123356788899999999999887754332222 4457899999999885443
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=8.6e-06 Score=89.43 Aligned_cols=189 Identities=13% Similarity=0.078 Sum_probs=107.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.++||-+..+..+..++..+ .. +.+.++|+.|+||||+|+.+++... ...... ...+...... ..+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Ln----ce~~~~--~~pCg~C~sC----~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLN----CENPIG--NEPCNECTSC----LEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcC----cccccC--ccccCCCcHH----HHHH
Confidence 45899999999998888876 44 4678999999999999999998763 111100 0011111111 1221
Q ss_pred HHhCCCcccc---cccCHH---HHHHHHHH-HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecC-Chhhh
Q 002655 236 KRIGLSAESW---MDKSLE---EKALDISN-ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTR-SLDVC 305 (896)
Q Consensus 236 ~~l~~~~~~~---~~~~~~---~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR-~~~v~ 305 (896)
.......... .....+ +....+.. ...++.-++|+|+++.. ..+..+...+........+|.+|. ...+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1111000000 011112 22222221 12456679999999864 345555444433333455554444 33442
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhH
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLA 360 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 360 (896)
.. ......|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+--
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHH
Confidence 22 223467999999999999988887654332222 45578899999999843
No 77
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.23 E-value=1.5e-05 Score=77.79 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=91.6
Q ss_pred ccccchhHHHHHHHHHhhc---cCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITD---QEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
.+|||-+.-++.+.-++.. ......-+.+||++|+||||||.-+++... ..|. +.+...-....++ ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~---~~sg~~i~k~~dl-~~ 94 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFK---ITSGPAIEKAGDL-AA 94 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EE---EEECCC--SCHHH-HH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeE---eccchhhhhHHHH-HH
Confidence 5689999888887555542 233567889999999999999999999873 3332 2222110011111 11
Q ss_pred HHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc---------cccccccCc-CCC-----------CCC
Q 002655 234 IGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI---------DLTELGIPL-QSL-----------NVS 292 (896)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~l-~~~-----------~~g 292 (896)
++.. + +++-+|.+|++.... ..++....+ ... .+=
T Consensus 95 il~~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 95 ILTN-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHHT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHh-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 1111 1 234466677776421 011110000 001 122
Q ss_pred cEEEEecCChhhhccCCC--CceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHh
Q 002655 293 SKVVFTTRSLDVCGSMEA--DEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAM 368 (896)
Q Consensus 293 s~IivTtR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L 368 (896)
+-|=.|||...+...+.. ....+++..+.+|-.++..+.+..-... -.++.+.+|+++|.|-|--..-+-+..
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 446678887655433332 2345899999999999998776433311 225669999999999997555444433
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.23 E-value=9.5e-06 Score=82.87 Aligned_cols=169 Identities=13% Similarity=0.069 Sum_probs=95.6
Q ss_pred cchhHHH-HHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002655 160 VGQESML-DQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRI 238 (896)
Q Consensus 160 vGr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 238 (896)
.|..... ..+.++.. .....+.+.|+|.+|+|||+||+.+++... .... .+.+++..... .. +
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~----~~~~-~~~~i~~~~~~------~~----~ 85 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADAS----YGGR-NARYLDAASPL------LA----F 85 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHH----hCCC-cEEEEehHHhH------HH----H
Confidence 3554443 33333333 222456789999999999999999998762 2222 34455433210 00 0
Q ss_pred CCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccc--cccccCcCC-CCCCc-EEEEecCChhhhc--------
Q 002655 239 GLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDL--TELGIPLQS-LNVSS-KVVFTTRSLDVCG-------- 306 (896)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~--~~~~~~l~~-~~~gs-~IivTtR~~~v~~-------- 306 (896)
.. ....-+||+||+.....+ ..+...+.. ...+. .||+|++......
T Consensus 86 --------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 01 123347889999753221 122222211 12333 4667766433221
Q ss_pred cCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHh
Q 002655 307 SMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAM 368 (896)
Q Consensus 307 ~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L 368 (896)
.+.....++++++++++-..++.+.+.......+ ++....+++.+.|.+..+..+-..+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222468899999998877777665432222222 4568888889999999887776554
No 79
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.22 E-value=2.1e-05 Score=80.29 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=97.1
Q ss_pred HHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCH
Q 002655 171 RCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSL 250 (896)
Q Consensus 171 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 250 (896)
.++..+ ....+.+||++|+||||||+.+.+... ... ..||..|....-..-.+.|.++-.
T Consensus 155 s~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk----~~S---yrfvelSAt~a~t~dvR~ife~aq----------- 214 (554)
T KOG2028|consen 155 SLIEQN--RIPSMILWGPPGTGKTTLARLIASTSK----KHS---YRFVELSATNAKTNDVRDIFEQAQ----------- 214 (554)
T ss_pred HHHHcC--CCCceEEecCCCCchHHHHHHHHhhcC----CCc---eEEEEEeccccchHHHHHHHHHHH-----------
Confidence 344445 788899999999999999999988752 111 456666654333333333332211
Q ss_pred HHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE--ecCChhh---hccCCCCceEEeccCChHH
Q 002655 251 EEKALDISNILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF--TTRSLDV---CGSMEADEKIEVKYLVHDE 323 (896)
Q Consensus 251 ~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e 323 (896)
=...+.++|.+|.+|.|..- .+-+ + .+|...+|.-++| ||.|+.. +..+....++.|++|..++
T Consensus 215 ------~~~~l~krkTilFiDEiHRFNksQQD-~--fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 215 ------NEKSLTKRKTILFIDEIHRFNKSQQD-T--FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNA 285 (554)
T ss_pred ------HHHhhhcceeEEEeHHhhhhhhhhhh-c--ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHH
Confidence 11235678999999999753 2222 2 2455566766554 6666544 2223456789999999999
Q ss_pred HHHHHHHhhC---Cccc---CCCc-c--H-HHHHHHHHHHcCCchh
Q 002655 324 AWRLFQEKVG---EATL---RCHS-D--I-LELAQTLARECCGLPL 359 (896)
Q Consensus 324 a~~Lf~~~~~---~~~~---~~~~-~--~-~~~~~~i~~~c~g~PL 359 (896)
...++.+... .... ..+. . + ..+..-++..|.|-.-
T Consensus 286 v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 286 VVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 9999887432 2110 1111 1 2 2456667777777653
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=3.7e-05 Score=84.67 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=108.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhh-----------------cCCCCEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQR-----------------QHHFDVVIWG 219 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~~~f~~~~wv 219 (896)
.+++|.+..++.+.+++..+. -.+.+.++|++|+||||+|+.+......... ..+++ .+++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEe
Confidence 357999999999999887652 2357789999999999999999887631100 01122 1222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE
Q 002655 220 VVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF 297 (896)
Q Consensus 220 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv 297 (896)
..+....... .+.+.+.+... -..+++-++|+|+++.. .....+...+......+.+|+
T Consensus 92 ~~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 92 DAASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 2211111111 11121111100 01245568999998654 233444334433334566667
Q ss_pred ecCChh-hhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHH
Q 002655 298 TTRSLD-VCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIG 365 (896)
Q Consensus 298 TtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g 365 (896)
+|.+.. +... ......+++.++++++..+.+...+.......+ .+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 765543 2221 123457889999999999998887643332222 3567889999999986655443
No 81
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.22 E-value=1e-05 Score=88.84 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=99.4
Q ss_pred ccccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC
Q 002655 157 RTVVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP 225 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~ 225 (896)
.++.|++..++++.+.+... -...+-+.++|++|+|||++|+++++... ..| +.+.
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-----~~~-----~~v~--- 188 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATF-----IRVV--- 188 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-----CCE-----Eecc---
Confidence 45899999999998876421 01245688999999999999999998763 333 2221
Q ss_pred CHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHh-cCCcEEEEEeccCCcc----------------cccccccCcC-
Q 002655 226 KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNIL-SRKKFVLLLDDIWQPI----------------DLTELGIPLQ- 287 (896)
Q Consensus 226 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~- 287 (896)
...+.... .+ ........+.+.. ...+.+|++||++... .+..+...+.
T Consensus 189 -~~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 -GSELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred -hHHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 11111110 10 0111222222222 3467899999987531 0111111111
Q ss_pred -CCCCCcEEEEecCChhhh-----ccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 288 -SLNVSSKVVFTTRSLDVC-----GSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 288 -~~~~gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
....+.+||.||...+.. ........+.++..+.++..++|...+.......... ...+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 112356788888754332 1112346789999999999999988775443221112 466777777664
No 82
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.8e-07 Score=95.19 Aligned_cols=129 Identities=22% Similarity=0.152 Sum_probs=74.7
Q ss_pred cccceeeeccccCccccC---CCCCCCCCcEEEcccCcccccc--chhhccCCCccEEecccccccccCCcc--ccCCCc
Q 002655 513 WEGFKRISLMENNITSLS---AIPNCPHLRTLLLYRNRISMIT--DGFFQFMPSLKVLNLGFNIFLNKLPSG--LSSLIS 585 (896)
Q Consensus 513 ~~~l~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~lp~~--~~~l~~ 585 (896)
+++++.+++.+..+...+ ....|++++.|+|++|-+.... ..+...+++|+.|+|+.| .+...-++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence 345666666666555443 3567778888888777544321 234566778888888777 33222111 224677
Q ss_pred CcEEeccCCCcc--ccchhhhcCCCCcEEeccccc-cccccccccCCCCccceeeccCccC
Q 002655 586 LEHLDLSFTVIR--ELPEEMKALVNLRYLNLEYVY-LNRLPLQLLCNFTKLQALRMLGCSN 643 (896)
Q Consensus 586 L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~-l~~lp~~~i~~l~~L~~L~l~~c~~ 643 (896)
|+.|.|+.|++. .+-...-.+++|..|++.+|. +..-... ...+..|+.|+++++..
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNL 258 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcc
Confidence 788888887665 333334456777777777772 2111111 23455677777777433
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.21 E-value=9.2e-06 Score=95.25 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=94.9
Q ss_pred ccccchhHHHH---HHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 157 RTVVGQESMLD---QVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
.+|+|.+..+. .+.+.+..+ ....+.++|++|+||||+|+.+++... ..|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~---~lna~~-~~i~----- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANHTR-----AHFS---SLNAVL-AGVK----- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHhc-----Ccce---eehhhh-hhhH-----
Confidence 35789888774 455556555 567788999999999999999998752 3331 111110 0000
Q ss_pred HHHHhCCCcccccccCHHHHHHHHHHHh--cCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEe--cCChh--hh
Q 002655 234 IGKRIGLSAESWMDKSLEEKALDISNIL--SRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFT--TRSLD--VC 305 (896)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivT--tR~~~--v~ 305 (896)
+..+......+.+ .+++.+||+||++.. ...+.+...+ ..|+.++++ |.+.. +.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 0111111221222 246789999999753 2333333222 235555553 44421 11
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcc----cCCCccHHHHHHHHHHHcCCchh
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEAT----LRCHSDILELAQTLARECCGLPL 359 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~g~PL 359 (896)
.. ......+.+++++.++...++.+.+.... .....--.+....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 12245789999999999999987664100 00011124556788888888653
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3.5e-05 Score=86.63 Aligned_cols=194 Identities=15% Similarity=0.146 Sum_probs=108.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCE-EEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDV-VIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 235 (896)
.+++|-+..+..+...+..+. -.+.+.++|+.|+||||+|+.+++.... ...... .-+..+. .......+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc---~~~~~~~~~~~~C~----~C~~C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNC---SALITENTTIKTCE----QCTNCISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcC---ccccccCcCcCCCC----CChHHHHHh
Confidence 357999999988888776651 2357889999999999999999988731 110000 0000000 001111111
Q ss_pred HHhCCCcc---cccccCHHHHHHHHHH----HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE-ecCChhhh
Q 002655 236 KRIGLSAE---SWMDKSLEEKALDISN----ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF-TTRSLDVC 305 (896)
Q Consensus 236 ~~l~~~~~---~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv-TtR~~~v~ 305 (896)
........ .......++....+.. -+.+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 10000000 0011122222222211 12456779999999874 345555544544444556554 55544443
Q ss_pred ccC-CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 306 GSM-EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 306 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
..+ .....+++.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 322 23467899999999999999988754332222 345677999999977443
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.1e-05 Score=88.81 Aligned_cols=187 Identities=17% Similarity=0.140 Sum_probs=108.6
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhh-h---------------cCCCCEEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQ-R---------------QHHFDVVIWGV 220 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---------------~~~f~~~~wv~ 220 (896)
.+++|-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++...... . ...|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 458999999999998887651 335678999999999999999998662100 0 00111222222
Q ss_pred eCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH-HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE
Q 002655 221 VSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN-ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF 297 (896)
Q Consensus 221 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv 297 (896)
........ +..+....+.. -..+++-++|+|+++.. ..+..+...+......+.+|+
T Consensus 95 aas~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 95 AASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred cccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 21111111 11122222221 12456779999999754 334444444444334555654
Q ss_pred ecCC-hhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch-hHHHHHHHH
Q 002655 298 TTRS-LDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP-LALKTIGRA 367 (896)
Q Consensus 298 TtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lal~~~g~~ 367 (896)
+|.+ ..+... ......+++.+++.++....+.+.+....... ..+....|++.++|.+ -|+..+-.+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4443 333322 23357899999999999888887654322111 2445678999999966 455555433
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=4.7e-05 Score=82.48 Aligned_cols=197 Identities=11% Similarity=0.015 Sum_probs=110.2
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCE-EEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDV-VIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 235 (896)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||+|+|..+++..-.... ..... ..-......+......+.|.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~-~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPP-PGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCC-CCCCccccccccccCCCCChHHHHHH
Confidence 468999999999999888762 2356889999999999999999887631100 00000 00000000000011111121
Q ss_pred HHhCCCc---------ccc----cccCHHHHHHHHHHHhc-----CCcEEEEEeccCCc--ccccccccCcCCCCCCcEE
Q 002655 236 KRIGLSA---------ESW----MDKSLEEKALDISNILS-----RKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKV 295 (896)
Q Consensus 236 ~~l~~~~---------~~~----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~I 295 (896)
.. ..++ +.. .....++ +..+.+.+. +++.++|+|+++.. .....+...+.....++.+
T Consensus 97 ~~-~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 97 AG-AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred cc-CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 10 0000 000 0112233 334444432 46779999999764 2333444344333346667
Q ss_pred EEecCChhh-hcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 296 VFTTRSLDV-CGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 296 ivTtR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
|++|.+.+- ... ......+.+.+++.++..+++.+...... .+....+++.++|.|.....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 777766533 221 23356899999999999999987653211 112367899999999866554
No 87
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.19 E-value=3.1e-05 Score=77.99 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred cccchh-HHHHHHHHHhhc-cCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 158 TVVGQE-SMLDQVWRCITD-QEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 158 ~~vGr~-~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.++|.. +..-.....+.. .+.....+.|+|..|+|||.|.+++++... ....-..+++++ ..+....+.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~---~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQ---KQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHH---HHCTTS-EEEEE------HHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHH---hccccccceeec------HHHHHHHHH
Confidence 345642 222333344433 333456789999999999999999999874 222223566664 445555555
Q ss_pred HHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCccc---cccc-ccCcC-CCCCCcEEEEecCChhh------
Q 002655 236 KRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPID---LTEL-GIPLQ-SLNVSSKVVFTTRSLDV------ 304 (896)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~-~~~l~-~~~~gs~IivTtR~~~v------ 304 (896)
..+.. ... ..+.+.+. .-=+|++||++.... |++. ...+. ....|.+||+|++...-
T Consensus 81 ~~~~~-------~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 81 DALRD-------GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHT-------TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHc-------ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 54421 111 22334444 345788999976422 2221 11111 11346789999964322
Q ss_pred ---hccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 305 ---CGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 305 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
...+...-.+++++++.++-.+++.+++.......+ ++++.-|++.+.+..-.+..+
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHH
Confidence 222344568999999999999999998864443333 455667777766555444433
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.2e-07 Score=93.76 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=41.3
Q ss_pred ccCcccEEeeccCCCCCC--CcccccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCc
Q 002655 749 GFRSLHTVFISDCSRLKE--LTWLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLE 821 (896)
Q Consensus 749 ~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 821 (896)
.+|+|..|+|++|..+++ +..+-+++.|++|+++.|..+- +. . -...+..|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~-~-------~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PE-T-------LLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hH-H-------eeeeccCcceEEEEecccc
Confidence 577888888888877765 2235677888888888886542 10 0 0125677888888888774
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=1.6e-06 Score=67.55 Aligned_cols=56 Identities=32% Similarity=0.474 Sum_probs=26.9
Q ss_pred cCcEEeccCCCccccch-hhhcCCCCcEEeccccccccccccccCCCCccceeeccC
Q 002655 585 SLEHLDLSFTVIRELPE-EMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLG 640 (896)
Q Consensus 585 ~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~ 640 (896)
+|++|++++|.++.+|. .+..+++|++|++++|.+..+|++.+..+++|++|++.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence 34444444444444443 334445555555554444444444445555555555444
No 90
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.17 E-value=6.2e-06 Score=87.29 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=65.8
Q ss_pred HHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCccccc
Q 002655 169 VWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP--KLDKIQDAIGKRIGLSAESWM 246 (896)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~ 246 (896)
+++.+..=. ...-.+|+|++|+||||||+.+|+... ..+|+.++||.+.+.. ++.++++.+...+-... .
T Consensus 159 vID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~----~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st---~ 230 (416)
T PRK09376 159 IIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSIT----TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST---F 230 (416)
T ss_pred eeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHH----hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC---C
Confidence 444444321 345678999999999999999999984 3489999999999887 77788888863221111 1
Q ss_pred ccCHHHH------HHHHHHH--hcCCcEEEEEeccCC
Q 002655 247 DKSLEEK------ALDISNI--LSRKKFVLLLDDIWQ 275 (896)
Q Consensus 247 ~~~~~~~------~~~l~~~--l~~k~~LlVlDdv~~ 275 (896)
+...... .-...++ -.+++++|++|++..
T Consensus 231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 2222211 1112222 267999999999864
No 91
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.5e-05 Score=85.71 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=105.2
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhh----------------cCCCCEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQR----------------QHHFDVVIWG 219 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv 219 (896)
.++||-+..++.+..++..+ .. +.+.++|+.|+||||+|+.+++....... .+.|.-++.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 45899999999999999776 44 45789999999999999999887631000 0111112222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE
Q 002655 220 VVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF 297 (896)
Q Consensus 220 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv 297 (896)
..+....+.++ +.+.+.+.. .-..++.-++|+|+|+.. .....+...+......+++|+
T Consensus 94 daas~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 22211112111 111111110 011356678999999863 334444444433334566666
Q ss_pred ecCCh-hhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 298 TTRSL-DVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 298 TtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
+|.+. .+... .+....+++.+++.++....+.+.+........ .+....|++.++|.+-.+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDAL 218 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 55443 33211 123457889999999988877776643321211 3446788999999875443
No 92
>PRK05642 DNA replication initiation factor; Validated
Probab=98.16 E-value=2.5e-05 Score=79.71 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=90.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
...+.|+|..|+|||.|++++++... ..-..++|++... +... ...+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~-----~~~~~v~y~~~~~------~~~~--------------------~~~~~~ 93 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE-----QRGEPAVYLPLAE------LLDR--------------------GPELLD 93 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-----hCCCcEEEeeHHH------HHhh--------------------hHHHHH
Confidence 36789999999999999999998763 1224567776431 1110 011222
Q ss_pred HhcCCcEEEEEeccCCc---ccccc-cccCcCC-CCCCcEEEEecCChhh---------hccCCCCceEEeccCChHHHH
Q 002655 260 ILSRKKFVLLLDDIWQP---IDLTE-LGIPLQS-LNVSSKVVFTTRSLDV---------CGSMEADEKIEVKYLVHDEAW 325 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~IivTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~ 325 (896)
.+.+-. +||+||+... ..|+. +...+.. ...|.+||+|++...- ...+....++++++++.++-.
T Consensus 94 ~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 94 NLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred hhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 233222 6889999642 34433 2222221 2346789998875322 122233467899999999999
Q ss_pred HHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHH
Q 002655 326 RLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIG 365 (896)
Q Consensus 326 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g 365 (896)
+.+..++.......+ ++...-|++.+.|..-.+..+-
T Consensus 173 ~il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 173 RALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 999866643222222 4567778888877765555443
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.2e-05 Score=87.67 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=107.2
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++....... ....+.-. ..++.....+.|..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~-~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGP-DGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCc-ccccCCCC----CCCCccHHHHHHHc
Confidence 458998888888888887762 2356789999999999999999877621000 00000000 11111122222211
Q ss_pred HhCCCc---ccccccCHHHHHHHHHHH----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-hhhhc
Q 002655 237 RIGLSA---ESWMDKSLEEKALDISNI----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-LDVCG 306 (896)
Q Consensus 237 ~l~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~ 306 (896)
.-.... +.......++..+.+... ..++.-++|+|+|+.. ..+..+...+.......++|++|.+ ..+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 000000 000011222222222111 1245568999999864 3344444444433345566655543 33321
Q ss_pred -cCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 307 -SMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 307 -~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
.......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+--+.
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 1233578999999999999999887754332222 3457888999998775443
No 94
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.4e-06 Score=98.00 Aligned_cols=104 Identities=27% Similarity=0.359 Sum_probs=79.6
Q ss_pred CCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCcc-ccchhhhcCCCCcEEecc
Q 002655 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIR-ELPEEMKALVNLRYLNLE 615 (896)
Q Consensus 537 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~ 615 (896)
.++.|+|++|.+....+..+..+++|+.|+|++|.....+|..++.+++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877555555788899999999988544578888899999999999999887 788888999999999999
Q ss_pred ccccc-cccccccCC-CCccceeeccCc
Q 002655 616 YVYLN-RLPLQLLCN-FTKLQALRMLGC 641 (896)
Q Consensus 616 ~~~l~-~lp~~~i~~-l~~L~~L~l~~c 641 (896)
+|.+. .+|.. ++. +.++..+++.++
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 88665 56654 443 345566666654
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.9e-05 Score=89.11 Aligned_cols=191 Identities=16% Similarity=0.097 Sum_probs=107.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.++||-+..++.+...+..+ ++ +.+.++|+.|+||||+|+.+++... ....+ ....+......+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~---c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLN---CETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhh---hccCC-------CCCCCCCCHHHHHHH
Confidence 45899999999998888776 44 4567999999999999999988763 11100 001111112222222
Q ss_pred HHhCCCc---ccccccCHHHHH---HHHHH-HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-hhhh
Q 002655 236 KRIGLSA---ESWMDKSLEEKA---LDISN-ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-LDVC 305 (896)
Q Consensus 236 ~~l~~~~---~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~ 305 (896)
..-.... +.......++.. ..+.. -..+++-++|+|+++.. .....+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1100000 000011122221 11111 12467779999999764 3344444444333345555555544 3332
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
.. ......|.+.+++.++..+.+.+.+....... ..+....|++.++|.+-.+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDAL 218 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 21 22357899999999999999987763322111 13456789999999886443
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.14 E-value=1.9e-05 Score=79.80 Aligned_cols=143 Identities=18% Similarity=0.099 Sum_probs=87.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
..+.+.|+|+.|+|||+|++.+++... ..+++.. .+...+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~----------~~~i~~~------~~~~~~~~---------------------- 84 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD----------ALLIHPN------EIGSDAAN---------------------- 84 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC----------CEEecHH------HcchHHHH----------------------
Confidence 346799999999999999999887642 1133211 11111111
Q ss_pred HHhcCCcEEEEEeccCCcc-cccccccCcCC-CCCCcEEEEecCC---------hhhhccCCCCceEEeccCChHHHHHH
Q 002655 259 NILSRKKFVLLLDDIWQPI-DLTELGIPLQS-LNVSSKVVFTTRS---------LDVCGSMEADEKIEVKYLVHDEAWRL 327 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~~~-~~~~~~~~l~~-~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L 327 (896)
.+.+ -+|++||+.... +-+.+...+.. ...|..||+|++. ++....+.....+++++++.++-.++
T Consensus 85 -~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 85 -AAAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred -hhhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 1111 278889996431 11122222211 2336779998873 23334445667899999999999999
Q ss_pred HHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHH
Q 002655 328 FQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIG 365 (896)
Q Consensus 328 f~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g 365 (896)
+.+++.......+ +++..-|++.+.|..-++..+-
T Consensus 162 L~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 162 IFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 9988854332233 4567888888887776666443
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=5.6e-05 Score=81.38 Aligned_cols=198 Identities=12% Similarity=0.081 Sum_probs=111.2
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
..++|-+...+.+...+..+. ....+.|+|+.|+||||+|+.+++..-... ...+... .....+......+.+..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~-~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHP-DPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCC-ccccCcc---ccCCCCCCCHHHHHHHc
Confidence 458999999999999988762 345688999999999999999988873100 0001111 01111111223333322
Q ss_pred H-------hCCCcccc-----cccCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEE
Q 002655 237 R-------IGLSAESW-----MDKSLEEKALDISNIL-----SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVF 297 (896)
Q Consensus 237 ~-------l~~~~~~~-----~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv 297 (896)
. +..+.+.. .....++ +..+.+++ .+++-++|+|+++... ....+...+.....+..+|+
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 2 10000000 0112233 23444444 3467799999998642 23333333332223445444
Q ss_pred ec-CChhhhccC-CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHH
Q 002655 298 TT-RSLDVCGSM-EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIG 365 (896)
Q Consensus 298 Tt-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g 365 (896)
+| +...+.... +....+.+.+++.++..+++.+...... -..+....+++.++|.|.....+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 433332221 2346899999999999999987432111 113447789999999998665443
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.13 E-value=5.4e-05 Score=74.72 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=58.0
Q ss_pred CCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCCh-hhhccC-CCCceEEeccCChHHHHHHHHHhhCCcccC
Q 002655 263 RKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSL-DVCGSM-EADEKIEVKYLVHDEAWRLFQEKVGEATLR 338 (896)
Q Consensus 263 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 338 (896)
+.+-++|+||++.. .....+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i--- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G-I--- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-C---
Confidence 45678999998764 23444444444444456677777653 222211 23468999999999999988776 1 1
Q ss_pred CCccHHHHHHHHHHHcCCchh
Q 002655 339 CHSDILELAQTLARECCGLPL 359 (896)
Q Consensus 339 ~~~~~~~~~~~i~~~c~g~PL 359 (896)
+ .+.+..|++.++|.|.
T Consensus 170 -~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -S---EEAAELLLALAGGSPG 186 (188)
T ss_pred -C---HHHHHHHHHHcCCCcc
Confidence 1 3558899999999885
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.5e-05 Score=84.29 Aligned_cols=181 Identities=17% Similarity=0.158 Sum_probs=106.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhh---h------------h-cCCCCEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIE---Q------------R-QHHFDVVIWG 219 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---~------------~-~~~f~~~~wv 219 (896)
.++||-+..++.+...+..+ .. +.+.++|+.|+||||+|+.++...... . + ...+.-++.+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 45899998888888887766 44 478899999999999999998754100 0 0 0011122333
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEE
Q 002655 220 VVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVF 297 (896)
Q Consensus 220 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv 297 (896)
+.+......++- .+.+.... .-..+++-++|+|++... .....+...+.......++|+
T Consensus 91 daas~~~vddIR-~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 91 DAASNTSVDDIK-VILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred ecccCCCHHHHH-HHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 332222222211 11111100 001346678999999754 234444444443345566666
Q ss_pred ecC-Chhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 298 TTR-SLDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 298 TtR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
+|. ...+... ......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+-.+
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 554 3343322 233567899999999999999888754432222 345778999999877543
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.7e-05 Score=81.51 Aligned_cols=187 Identities=11% Similarity=0.078 Sum_probs=104.1
Q ss_pred ccccchhHHHHHHHHHhhccCC--------CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEK--------NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLD 228 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 228 (896)
.+++|-+..++.+..++..+.. -.+.+.++|++|+|||++|+.++...-.. .. . + ..+..-
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~---~~-~---~----~~Cg~C 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT---DP-D---E----PGCGEC 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---CC-C---C----CCCCCC
Confidence 4589999999999998876521 24568899999999999999998765210 00 0 0 001111
Q ss_pred HHHHHHHHHhCCCc-----ccccccCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEE
Q 002655 229 KIQDAIGKRIGLSA-----ESWMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVV 296 (896)
Q Consensus 229 ~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Ii 296 (896)
..-+.+...- .+. ........++. ..+.+.. .+++-++|+|+++... ....+...+.....+..+|
T Consensus 74 ~~C~~~~~~~-hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fI 151 (394)
T PRK07940 74 RACRTVLAGT-HPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWL 151 (394)
T ss_pred HHHHHHhcCC-CCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEE
Confidence 1111111000 000 00001112221 1222222 2455688889997642 2233333333334456666
Q ss_pred EecCCh-hhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 297 FTTRSL-DVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 297 vTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
++|.+. .+... .+....+.+.+++.++..+.+.+..+. + .+.+..++..++|.|.....+
T Consensus 152 L~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 152 LCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 666653 33322 223568999999999999888754321 1 344788999999999755443
No 101
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.09 E-value=2.3e-06 Score=95.67 Aligned_cols=127 Identities=32% Similarity=0.442 Sum_probs=106.4
Q ss_pred cCcccceeeeccccCccccCCCCCCC--CCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcE
Q 002655 511 KDWEGFKRISLMENNITSLSAIPNCP--HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEH 588 (896)
Q Consensus 511 ~~~~~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 588 (896)
...+.+..+.+.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.+.+|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 33457889999999999998865554 899999999999888644 788999999999999 89999988889999999
Q ss_pred EeccCCCccccchhhhcCCCCcEEeccccccccccccccCCCCccceeeccC
Q 002655 589 LDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLG 640 (896)
Q Consensus 589 L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~ 640 (896)
|+++++.+..+|..+..+.+|++|.++++.....+.. +.+++++..|.+.+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~~~l~~l~l~~ 241 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSN 241 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcceecchh-hhhcccccccccCC
Confidence 9999999999999888888899999999955555543 77888888777444
No 102
>PF14516 AAA_35: AAA-like domain
Probab=98.07 E-value=0.0018 Score=69.75 Aligned_cols=199 Identities=15% Similarity=0.165 Sum_probs=119.7
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-----CCHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-----PKLDKIQ 231 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~ 231 (896)
+..|+|...-+++.+.+... ...+.|.|+-.+|||+|..++.+... +..+ .++++++..- .+....+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~----~~~~-~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQ----QQGY-RCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHH----HCCC-EEEEEEeecCCCcccCCHHHHH
Confidence 45689987777777777664 37899999999999999999988873 2343 4557776542 2445444
Q ss_pred ----HHHHHHhCCCccc---c--cccCHHHHHHHHHHHh---cCCcEEEEEeccCCccc---c-cccccCc---------
Q 002655 232 ----DAIGKRIGLSAES---W--MDKSLEEKALDISNIL---SRKKFVLLLDDIWQPID---L-TELGIPL--------- 286 (896)
Q Consensus 232 ----~~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~---~-~~~~~~l--------- 286 (896)
..|.+++++...- + ...........+.+.+ .+++.+|++|+|+.... + .++...+
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4555556554310 0 0112223334444433 25899999999975321 1 1111111
Q ss_pred -CCCCCCcEEEEecCChhhh-----ccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhH
Q 002655 287 -QSLNVSSKVVFTTRSLDVC-----GSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLA 360 (896)
Q Consensus 287 -~~~~~gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLa 360 (896)
+....=+-|++.+...... ..+.....++|++++.+|...|..+.-..-. ....++|...+||+|.-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHH
Confidence 0000111122222111111 1123346789999999999999877642211 22389999999999999
Q ss_pred HHHHHHHhcC
Q 002655 361 LKTIGRAMAY 370 (896)
Q Consensus 361 l~~~g~~L~~ 370 (896)
+..++..+..
T Consensus 236 v~~~~~~l~~ 245 (331)
T PF14516_consen 236 VQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=7.5e-05 Score=83.57 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=102.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
...+.|+|..|+|||+|++++++... ....-..+++++ ..++...+...++.. .+....+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~---~~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~ 202 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE---SNFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKN 202 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH---HhCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHH
Confidence 45689999999999999999999763 112223445553 445666666655321 012233444
Q ss_pred HhcCCcEEEEEeccCCcc---cc-cccccCcCC-CCCCcEEEEecCCh---------hhhccCCCCceEEeccCChHHHH
Q 002655 260 ILSRKKFVLLLDDIWQPI---DL-TELGIPLQS-LNVSSKVVFTTRSL---------DVCGSMEADEKIEVKYLVHDEAW 325 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~ 325 (896)
.+. +.-+||+||+.... .+ +.+...+.. ...|..||+|+... .+...+..+-++.+++++.++-.
T Consensus 203 ~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 203 EIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred Hhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 443 34588899996532 12 222222211 12355788887543 22233445567889999999999
Q ss_pred HHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHH
Q 002655 326 RLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGR 366 (896)
Q Consensus 326 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~ 366 (896)
+++.+++...... ..--++...-|++.++|.|-.+.-+..
T Consensus 282 ~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 282 AIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9999887532211 012256788999999999977765543
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=7.3e-05 Score=84.61 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=107.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|++..++.+..++..+. -.+.+.++|+.|+||||+|+.+++... ... |... ..+......+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~---C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN---CLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc---CCC------CCCC-CCCcccHHHHHHHc
Confidence 458999999999999887652 335788999999999999999988862 111 1110 11111122222211
Q ss_pred HhCCCcccc---cccCHHHH---HHHHHH-HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEec-CChhhhc
Q 002655 237 RIGLSAESW---MDKSLEEK---ALDISN-ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTT-RSLDVCG 306 (896)
Q Consensus 237 ~l~~~~~~~---~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~~ 306 (896)
......... .....++. ...+.. -..+++-++|+|+++.. ..+..+...+........+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 110000000 00111211 111111 01234457999999763 33444444343333345555544 3333322
Q ss_pred c-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHHHH
Q 002655 307 S-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTIGR 366 (896)
Q Consensus 307 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~g~ 366 (896)
. ......+++.++++++....+.+.+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1 223568899999999999988887643321122 3457889999999664 4444443
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=5.2e-05 Score=83.95 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=109.5
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE-eCCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV-VSREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i 234 (896)
.+++|.+..++.+..++..+ .+ +.+.++|+.|+||||+|+.+++... -...+...-|.. ....+..-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~---c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVN---CQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhc---CCCCcCcccccccCCCCCCCCHHHHHH
Confidence 45899999999888888766 44 4578999999999999999988773 111111111110 01111111112222
Q ss_pred HHHhCCCcccc---cccCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEec-CChh
Q 002655 235 GKRIGLSAESW---MDKSLEEKALDISNIL-----SRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTT-RSLD 303 (896)
Q Consensus 235 ~~~l~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~ 303 (896)
...-....... .....++.. .+.+.+ .+++-++|+|++... ..+..+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 11110000000 011122222 222332 345668899999764 34555544454444566666555 4333
Q ss_pred hhccC-CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHH
Q 002655 304 VCGSM-EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTI 364 (896)
Q Consensus 304 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~ 364 (896)
+...+ .....+++.++++++..+.+...+.......+ .+.+..|++.++|.+- |+..+
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 33221 12357889999999998888877643221122 4568899999999775 44433
No 106
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.03 E-value=8e-05 Score=80.94 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=71.6
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++++.+..++.+...|... +.+.++|++|+|||++|+++++... ....|+.+.||.++...+..++...+.-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~---~~~~~~~v~~VtFHpsySYeDFI~G~rP 247 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLT---GEKAPQRVNMVQFHQSYSYEDFIQGYRP 247 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhc---CCcccceeeEEeecccccHHHHhcccCC
Confidence 35788899999999988854 6788899999999999999998873 3456788999999988876665542210
Q ss_pred HhCCCcccccccCHHHHHHHHHHHh--cCCcEEEEEeccCCc
Q 002655 237 RIGLSAESWMDKSLEEKALDISNIL--SRKKFVLLLDDIWQP 276 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~ 276 (896)
.+.. ........-+ .+.+.- .+++++||+|++...
T Consensus 248 -~~vg-y~~~~G~f~~---~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 248 -NGVG-FRRKDGIFYN---FCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred -CCCC-eEecCchHHH---HHHHHHhcccCCcEEEEehhhcc
Confidence 0000 0000011111 111211 247899999999653
No 107
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=2e-05 Score=84.11 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=63.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC--CCHHHHHHHHHHHhCCCcccccccC---H-HH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE--PKLDKIQDAIGKRIGLSAESWMDKS---L-EE 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~---~-~~ 252 (896)
....++|+|++|.|||||++.+++... ..+|+..+|+.+.+. .++.++++.+...+-...-...... . ..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~----~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~ 242 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT----RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEM 242 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc----ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHH
Confidence 446789999999999999999999984 458999999999866 6889999999543322110000000 0 11
Q ss_pred HHHHHHHH-hcCCcEEEEEeccCC
Q 002655 253 KALDISNI-LSRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 ~~~~l~~~-l~~k~~LlVlDdv~~ 275 (896)
..+..... -.+++++|++|++..
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhH
Confidence 11112222 357999999999965
No 108
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=1.3e-05 Score=94.14 Aligned_cols=103 Identities=22% Similarity=0.310 Sum_probs=86.6
Q ss_pred cceeeeccccCccc-cC-CCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEecc
Q 002655 515 GFKRISLMENNITS-LS-AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLS 592 (896)
Q Consensus 515 ~l~~l~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 592 (896)
.+..|++.++.+.. ++ .+..+++|+.|+|++|.+....+..++.+++|++|+|++|.....+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888764 33 37889999999999999875555558999999999999996556899999999999999999
Q ss_pred CCCcc-ccchhhhcC-CCCcEEecccc
Q 002655 593 FTVIR-ELPEEMKAL-VNLRYLNLEYV 617 (896)
Q Consensus 593 ~~~i~-~lp~~i~~L-~~L~~L~l~~~ 617 (896)
+|.+. .+|..++.+ .++..+++.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 99887 899988764 57788888887
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=9.2e-05 Score=84.53 Aligned_cols=186 Identities=17% Similarity=0.157 Sum_probs=106.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhh----------------cCCCCEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQR----------------QHHFDVVIWG 219 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------~~~f~~~~wv 219 (896)
.++||-+..++.+..++..+ +. +.+.++|+.|+||||+|+.+++....+.. .+.|.-.+++
T Consensus 16 ~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 45899999999999888875 44 45679999999999999999887621000 0011112222
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEE
Q 002655 220 VVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVF 297 (896)
Q Consensus 220 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv 297 (896)
..+....... .+.+...... .-..+++-++|+|+++... ....+...+......+.+|+
T Consensus 94 ~~~~~~~vd~-ir~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 94 DAASNTQVDA-MRELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred eccccCCHHH-HHHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 2111111111 1111111100 0113566799999997643 23344444433334556666
Q ss_pred ecCCh-hhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHHHH
Q 002655 298 TTRSL-DVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTIGR 366 (896)
Q Consensus 298 TtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~g~ 366 (896)
+|.+. .+... ......+++.+++.++..+.+.+.+....... ..+....|++.++|.+- |+..+-.
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~lldq 223 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLLDQ 223 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55443 33211 12246789999999999988887764332111 13456889999999774 4444433
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00018 Score=81.93 Aligned_cols=197 Identities=13% Similarity=0.150 Sum_probs=109.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++... .....+ ...++.....+.|..
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~---C~~~~~-------~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALN---CETAPT-------GEPCNTCEQCRKVTQ 84 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhcc---ccCCCC-------CCCCcccHHHHHHhc
Confidence 457998888888888887651 246788899999999999999988763 111000 001111111222211
Q ss_pred HhCCCcccc---cccCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-hhhh
Q 002655 237 RIGLSAESW---MDKSLEEKALDISNI-----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-LDVC 305 (896)
Q Consensus 237 ~l~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~ 305 (896)
......... .....++. ..+.+. ..+++-++|+|+++.. .....+...+........+|++|.+ ..+.
T Consensus 85 g~hpDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCCCceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 100000000 01111211 112221 2356679999999764 3344444444322334556665544 3333
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch-hHHHHHHHHh
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP-LALKTIGRAM 368 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lal~~~g~~L 368 (896)
.. ......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 123457899999999999988876643321122 455788999999965 6777766544
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00016 Score=79.76 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=103.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhh---cCCCCEE-EEEEeCCCCCHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQR---QHHFDVV-IWGVVSREPKLDKIQD 232 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~~~f~~~-~wv~~s~~~~~~~~~~ 232 (896)
.+++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.+.+....... ...|... +-+......+... .+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~ 94 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IR 94 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HH
Confidence 357999999999999987651 3458889999999999999999887631000 0112111 1111111111111 11
Q ss_pred HHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEec-CChhhhcc-C
Q 002655 233 AIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTT-RSLDVCGS-M 308 (896)
Q Consensus 233 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~-~ 308 (896)
.+.+++... -..+++-++++|++.... .+..+...+......+.+|++| ....+... .
T Consensus 95 ~l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 95 NLIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 111111100 012455689999986532 2444433332223345555554 33333221 1
Q ss_pred CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHHH
Q 002655 309 EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTIG 365 (896)
Q Consensus 309 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~g 365 (896)
.....++..++++++....+.+.+.......+ .+....+++.++|.+- ++..+-
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHHHH
Confidence 23457899999999999988887654332222 4568888889998665 333333
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00029 Score=81.19 Aligned_cols=201 Identities=14% Similarity=0.122 Sum_probs=108.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE-eCCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV-VSREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i 234 (896)
.++||-+..+..+...+..+ .+ ..+.++|+.|+||||+|+.+++..- .....+...|.. +...+......+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~---c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVN---CQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhC---CCCcCCccccccccCCCCccCHHHHHH
Confidence 45899999999998888765 44 4588999999999999999988873 111111011111 01111111222222
Q ss_pred HHHhCCCcccc---cccCHHHHHHHHHHH----hcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEec-CChhh
Q 002655 235 GKRIGLSAESW---MDKSLEEKALDISNI----LSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTT-RSLDV 304 (896)
Q Consensus 235 ~~~l~~~~~~~---~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v 304 (896)
...-....... .....++....+... ..+++-++|+|+++... ....+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 11100000000 011123322221111 23456688999987642 3444444443333445555444 43344
Q ss_pred hcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHHH
Q 002655 305 CGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTIG 365 (896)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~g 365 (896)
... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 322 234578999999999988888876643221122 4558889999999554 444443
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00013 Score=83.88 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=109.7
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC--EEEEEEeCCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD--VVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i 234 (896)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++.... ..... ...+- .+....--+.|
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c---~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNY---EGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCc---CCccccCCCccc----cCcccHHHHHH
Confidence 458999999999999887662 2346889999999999999999887631 10000 00000 01111111222
Q ss_pred HHHhCCCccc---ccccCHHHHHHHHHHH-----hcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEec-CChh
Q 002655 235 GKRIGLSAES---WMDKSLEEKALDISNI-----LSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTT-RSLD 303 (896)
Q Consensus 235 ~~~l~~~~~~---~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~ 303 (896)
...-....-. ......++.. .+.+. ..+++-++|+|+++... ....+...+......+.+|++| ....
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred hcCCCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2111000000 0011222222 12111 23456689999997642 3444444444334456666555 3333
Q ss_pred hhccC-CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 304 VCGSM-EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 304 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
+...+ .....+++.+++.++....+.+.+........ .+....|++.++|.+.-+...
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 32222 23468899999999999999887754332222 355788999999988655433
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=9.9e-06 Score=57.67 Aligned_cols=40 Identities=40% Similarity=0.514 Sum_probs=25.2
Q ss_pred cCcEEeccCCCccccchhhhcCCCCcEEeccccccccccc
Q 002655 585 SLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPL 624 (896)
Q Consensus 585 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 624 (896)
+|++|++++|.|+.+|..+++|++|++|++++|.+.+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 5666666666666666666667777777776666665543
No 115
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.00051 Score=73.29 Aligned_cols=208 Identities=17% Similarity=0.155 Sum_probs=123.9
Q ss_pred cccccchhHHHHHHHHHhhcc--CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQ--EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
+..++||+.+++.+..++... .+..+.+.|.|.+|.|||.+...++.+.. ..... -.++++.+..-....+++..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~--~~~~~-~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS--KSSKS-PVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh--hhccc-ceeEEEeeccccchHHHHHH
Confidence 456899999999999998763 34678899999999999999999999874 11111 25577777765667777777
Q ss_pred HHHHhCCCcccccccCHHHHHHHHHHHhcC--CcEEEEEeccCCcc--cccccccCc-CCCCCCcEEEEecCCh--h---
Q 002655 234 IGKRIGLSAESWMDKSLEEKALDISNILSR--KKFVLLLDDIWQPI--DLTELGIPL-QSLNVSSKVVFTTRSL--D--- 303 (896)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~--~~~~~~~~l-~~~~~gs~IivTtR~~--~--- 303 (896)
|...+--... ......+....+.+...+ +.+|+|+|..+... .-..+...| +..-+++|+|+.---. +
T Consensus 226 I~~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 226 IFSSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 7776611000 111224455556665544 36899999987531 111111111 1223456665532110 0
Q ss_pred -hhccC-----CCCceEEeccCChHHHHHHHHHhhCCcccC--CCccHHHHHHHHHHHcCCchhHHHHHHHHh
Q 002655 304 -VCGSM-----EADEKIEVKYLVHDEAWRLFQEKVGEATLR--CHSDILELAQTLARECCGLPLALKTIGRAM 368 (896)
Q Consensus 304 -v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~--~~~~~~~~~~~i~~~c~g~PLal~~~g~~L 368 (896)
....+ -....+...|.+.++-.++|.++....... .+..++-.|++++...|.+--|+.+.-+.+
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11111 124567889999999999999988644311 112233334444444455555555554443
No 116
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.94 E-value=9.1e-05 Score=81.66 Aligned_cols=172 Identities=18% Similarity=0.219 Sum_probs=97.6
Q ss_pred ccccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC
Q 002655 157 RTVVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP 225 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~ 225 (896)
.++.|++..++++.+.+... -...+-|.++|++|+|||++|+++++... .. |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~-----~i~v~~-- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----AT-----FIRVVG-- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CC-----EEEeeh--
Confidence 45789999999998876321 12356788999999999999999998762 22 222211
Q ss_pred CHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHh-cCCcEEEEEeccCCcc------------c----ccccccCcC-
Q 002655 226 KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNIL-SRKKFVLLLDDIWQPI------------D----LTELGIPLQ- 287 (896)
Q Consensus 226 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~- 287 (896)
..+.... . .. .......+.+.. ...+.+|+|||++... . +..+...+.
T Consensus 199 --~~l~~~~---~--------g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 --SELVQKF---I--------GE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred --HHHhHhh---c--------cc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 1111110 0 11 112222222222 3567899999997521 0 111111111
Q ss_pred -CCCCCcEEEEecCChhhhcc-C----CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 288 -SLNVSSKVVFTTRSLDVCGS-M----EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 288 -~~~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
....+..||.||...+.... + .....+.+++.+.++-.++|.............+ ...+++.+.|.-
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 11235577878875443221 1 1245789999999999999988775443222222 455666666643
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.92 E-value=0.00011 Score=76.67 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=79.7
Q ss_pred cccchhHHHHHHHHH---hhc----------cCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC
Q 002655 158 TVVGQESMLDQVWRC---ITD----------QEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE 224 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~---L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 224 (896)
.++|.+..+++|.+. ... ..+....+.++|++|+||||+|+.+++... ....-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~---~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK---EMNVLSKGHLIEVERA 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH---hcCcccCCceEEecHH
Confidence 478888777666543 211 122345678999999999999999988753 1111111123333221
Q ss_pred CCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc----------cccccccCcCCCCCCcE
Q 002655 225 PKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI----------DLTELGIPLQSLNVSSK 294 (896)
Q Consensus 225 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~gs~ 294 (896)
++... .. ..........+.+ . ..-+|++|++.... ....+...+........
T Consensus 84 ----~l~~~---~~--------g~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 84 ----DLVGE---YI--------GHTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred ----Hhhhh---hc--------cchHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 11111 00 1111111122222 1 23488999997521 22223222322222335
Q ss_pred EEEecCChhh----------hccCCCCceEEeccCChHHHHHHHHHhhCC
Q 002655 295 VVFTTRSLDV----------CGSMEADEKIEVKYLVHDEAWRLFQEKVGE 334 (896)
Q Consensus 295 IivTtR~~~v----------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 334 (896)
+|+++...+. ... ....+.+++++.+|-.+++.+.+..
T Consensus 146 vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHH
Confidence 5555543222 111 1346889999999999999877754
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00056 Score=78.31 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=109.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.++||.+..++.|..++..+ .+ +.+.++|+.|+||||+|+.+++.... ....+ + ..++.-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c---~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNC---AQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcc---ccCCC---C----CcccccHHHHHhh
Confidence 45899999999999998876 44 45789999999999999999987631 01000 0 0111111111111
Q ss_pred HHhCCCc-----ccccccCHHHH---HHHHHH-HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEec-CChh
Q 002655 236 KRIGLSA-----ESWMDKSLEEK---ALDISN-ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTT-RSLD 303 (896)
Q Consensus 236 ~~l~~~~-----~~~~~~~~~~~---~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~ 303 (896)
..-+... +.......++. ...+.. -..+++-++|+|++... .....+...+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 1000000 00001112221 111111 12345668999999753 33444444444333455555544 4444
Q ss_pred hhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch-hHHHHHHHHhc
Q 002655 304 VCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP-LALKTIGRAMA 369 (896)
Q Consensus 304 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lal~~~g~~L~ 369 (896)
+... ......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+ -|+..+-..+.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3322 233578999999999999888876643331122 345678899999977 45555544443
No 119
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.90 E-value=0.00024 Score=74.70 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=81.3
Q ss_pred cccchhHHHHHHHHHhh---c---------c-CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC
Q 002655 158 TVVGQESMLDQVWRCIT---D---------Q-EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE 224 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~---~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 224 (896)
.++|.++.++++.+... . . .....-+.++|++|+|||++|+.++.... ........-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~---~~g~~~~~~~v~v~~- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH---RLGYVRKGHLVSVTR- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH---HcCCcccceEEEecH-
Confidence 46777766666544321 1 0 01123578999999999999999888763 112221112444442
Q ss_pred CCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc-----------ccccccccCcCCCCCCc
Q 002655 225 PKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP-----------IDLTELGIPLQSLNVSS 293 (896)
Q Consensus 225 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~gs 293 (896)
.++ ...+.. .+.......+.+ . ..-+|++|++... ..+..+...+.....+.
T Consensus 99 ---~~l----~~~~~g-------~~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 161 (284)
T TIGR02880 99 ---DDL----VGQYIG-------HTAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred ---HHH----hHhhcc-------cchHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 122 211111 111111112222 2 3368899999632 11222323333333455
Q ss_pred EEEEecCChhhhccC--------CCCceEEeccCChHHHHHHHHHhhCC
Q 002655 294 KVVFTTRSLDVCGSM--------EADEKIEVKYLVHDEAWRLFQEKVGE 334 (896)
Q Consensus 294 ~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~~~~ 334 (896)
+||+++.....-..+ .....+++++++.+|-.+++...+..
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 777776543221111 11357899999999999998877643
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00021 Score=85.07 Aligned_cols=194 Identities=11% Similarity=0.084 Sum_probs=107.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.++||.+..++.|..++..+ ++ +.+.++|+.|+||||+|+.+++.... ..... ...+......+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C---~~~~~-------~~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNC---VEGPT-------STPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCc---ccCCC-------CCCCcccHHHHHHH
Confidence 45899999999999998876 44 56789999999999999999888731 11100 00011111111111
Q ss_pred HHhCCCc-----ccccccCHHHHHHHHHH-----HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-h
Q 002655 236 KRIGLSA-----ESWMDKSLEEKALDISN-----ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-L 302 (896)
Q Consensus 236 ~~l~~~~-----~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~ 302 (896)
..-.... +.......++... +.+ -..+++-++|||+++.. .....+...+......+.+|++|.+ .
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 1000000 0000111222211 211 13456668999999764 3344444444433445666655543 3
Q ss_pred hhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHHHH
Q 002655 303 DVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTIGR 366 (896)
Q Consensus 303 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~g~ 366 (896)
.+... ......|++..++.++..+++.+.+........ .+....|++.++|.+. ++..+-.
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al~eLEK 224 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSLSVLDQ 224 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34322 234578999999999999888877643321211 3446788999999884 3333333
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.88 E-value=0.00038 Score=71.42 Aligned_cols=202 Identities=17% Similarity=0.146 Sum_probs=117.2
Q ss_pred ccccchh---HHHHHHHHHhhcc-CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcC-CCCEEEEEEeCCCCCHHHHH
Q 002655 157 RTVVGQE---SMLDQVWRCITDQ-EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH-HFDVVIWGVVSREPKLDKIQ 231 (896)
Q Consensus 157 ~~~vGr~---~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~ 231 (896)
+..||-. +.++++.+.+... ....+-+.|+|.+|.|||++++++..........+ .--.++.|.+...++...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 3455543 3355555555543 33567899999999999999999998763111111 11257788888899999999
Q ss_pred HHHHHHhCCCcccccccCHHHHHHHHHHHhcC-CcEEEEEeccCCcc-----ccccccc---CcCCCCCCcEEEEecCCh
Q 002655 232 DAIGKRIGLSAESWMDKSLEEKALDISNILSR-KKFVLLLDDIWQPI-----DLTELGI---PLQSLNVSSKVVFTTRSL 302 (896)
Q Consensus 232 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~-----~~~~~~~---~l~~~~~gs~IivTtR~~ 302 (896)
..|+.+++.+... ..+..+........++. +--+||+|++.+.- .-.++.. .+...-.=+-|.+-|+..
T Consensus 114 ~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 114 SAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 9999999987642 23444444445555544 55689999997631 1111111 111111223455555432
Q ss_pred --------hhhccCCCCceEEeccCChHHH-HHHHHHhhCCcc--cCCCccHHHHHHHHHHHcCCchhHHHH
Q 002655 303 --------DVCGSMEADEKIEVKYLVHDEA-WRLFQEKVGEAT--LRCHSDILELAQTLARECCGLPLALKT 363 (896)
Q Consensus 303 --------~v~~~~~~~~~~~l~~L~~~ea-~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~g~PLal~~ 363 (896)
+.+.. ...+.++....++- ..|+......-. ....-...+++..|...++|+.=-+..
T Consensus 192 ~~al~~D~QLa~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 192 YRALRTDPQLASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHhccCHHHHhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 22222 24556666655443 444433221111 112223467899999999999755443
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.0003 Score=79.25 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=106.5
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.+++|-+..++.+...+..+ .. +++.++|+.|+||||+|+.+++...... ...+. .+........+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~-~~~~~---------pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQ-GPSST---------PCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCC-CCCCC---------CCcccHHHHHHh
Confidence 35899999999998888766 44 4668999999999999999888762100 00000 000000001110
Q ss_pred HHhCCCc---ccccccCHHHHHHHHHHH----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCCh-hhh
Q 002655 236 KRIGLSA---ESWMDKSLEEKALDISNI----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSL-DVC 305 (896)
Q Consensus 236 ~~l~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~ 305 (896)
....... +.......++....+... ..+++-++|+|+++.. +....+...+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 0000000 000001122222222110 1245668999999764 23344443443334456777666553 221
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
.. ......+++.+++.++....+.+.+........ .+.+..|++.++|.+--+...
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 11 123468899999999999998877654332222 456789999999988544433
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.88 E-value=0.00036 Score=77.91 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
...+.|+|++|+|||+|++++++... ....-..+++++. .++...+...+.. ...+ .+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~---~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~~----~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL---ENNPNAKVVYVSS------EKFTNDFVNALRN-------NKME----EFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH---HhCCCCcEEEEEH------HHHHHHHHHHHHc-------CCHH----HHHH
Confidence 45789999999999999999999874 1111134566643 3344444444421 1122 2233
Q ss_pred HhcCCcEEEEEeccCCccc---c-cccccCcCC-CCCCcEEEEecCCh-h--------hhccCCCCceEEeccCChHHHH
Q 002655 260 ILSRKKFVLLLDDIWQPID---L-TELGIPLQS-LNVSSKVVFTTRSL-D--------VCGSMEADEKIEVKYLVHDEAW 325 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~-~--------v~~~~~~~~~~~l~~L~~~ea~ 325 (896)
.+.+ .-+||+||+..... + +.+...+.. ...|..||+||... . +...+.....+.+++.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3332 34889999975321 1 112211211 12355688887642 1 2223333457899999999999
Q ss_pred HHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 326 RLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 326 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
+++.+.+.......+ ++....|++.+.|..-.+.
T Consensus 275 ~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 999988754432222 4567788888887765444
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00013 Score=84.88 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=110.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++... ...... ....++.....+.|..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~---c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVN---CTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhc---CCCCCC------CCCCCccCHHHHHHhc
Confidence 468999999999988887652 235668999999999999999988762 100000 0011222233344433
Q ss_pred HhCCCcccc---cccCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-hhhh
Q 002655 237 RIGLSAESW---MDKSLEEKALDISNIL-----SRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-LDVC 305 (896)
Q Consensus 237 ~l~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~ 305 (896)
......-.. .....++. ..+.+.+ .+++-++|+|+++.. .....+...+......+.+|++|.+ ..+.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110000 01112222 1222221 245678999998754 3344444344333345666666543 2332
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
.. ......+.+..++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 21 123457889999999998888877654332222 355889999999988655443
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.0003 Score=78.71 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=95.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC-EEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD-VVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
...+.|+|.+|+|||+||+++++... +.... .++|++. .++...+...+.. ...+ .+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~----~~~~~~~v~yi~~------~~f~~~~~~~~~~-------~~~~----~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV----QNEPDLRVMYITS------EKFLNDLVDSMKE-------GKLN----EFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH----HhCCCCeEEEEEH------HHHHHHHHHHHhc-------ccHH----HHH
Confidence 45699999999999999999999873 22333 5667653 3455555554421 1122 233
Q ss_pred HHhcCCcEEEEEeccCCcc---cc-cccccCcCC-CCCCcEEEEecC-Chhh--------hccCCCCceEEeccCChHHH
Q 002655 259 NILSRKKFVLLLDDIWQPI---DL-TELGIPLQS-LNVSSKVVFTTR-SLDV--------CGSMEADEKIEVKYLVHDEA 324 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~IivTtR-~~~v--------~~~~~~~~~~~l~~L~~~ea 324 (896)
+.+..+.-+|++||+.... .+ ..+...+.. ...|..||+||. .+.- ...+.....+.+++.+.++-
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 3333456689999997431 11 122222211 123457888875 3221 22234456789999999999
Q ss_pred HHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 325 WRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 325 ~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
.+++.+.+.......+ .++...|++.+.|.--.+
T Consensus 269 ~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 269 KKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 9999888754332233 456778888887764443
No 126
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1e-05 Score=80.40 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=48.6
Q ss_pred CCCCCCcEEEcccCccccccc--hhhccCCCccEEecccccccccCCccc-cCCCcCcEEeccCCCc--cccchhhhcCC
Q 002655 533 PNCPHLRTLLLYRNRISMITD--GFFQFMPSLKVLNLGFNIFLNKLPSGL-SSLISLEHLDLSFTVI--RELPEEMKALV 607 (896)
Q Consensus 533 ~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~l~~~~i--~~lp~~i~~L~ 607 (896)
..++.++.|++.+|.++.... .++.+||+|++|+|+.| .+...-.++ -.+.+|++|-|.+|.+ +.+-..+.+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 355677777777776554322 34567777777777776 333221222 2456677777776633 34555555666
Q ss_pred CCcEEecccc
Q 002655 608 NLRYLNLEYV 617 (896)
Q Consensus 608 ~L~~L~l~~~ 617 (896)
.++.|.++.|
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 6666666555
No 127
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.86 E-value=0.00032 Score=79.32 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=102.6
Q ss_pred ccchhHH--HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 159 VVGQESM--LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 159 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
++|.... ...+..+..........+.|+|++|+|||+|++++++... ....-..+++++. .++...+..
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~v~yi~~------~~~~~~~~~ 195 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYIL---EKNPNAKVVYVTS------EKFTNDFVN 195 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEEEH------HHHHHHHHH
Confidence 4565432 3333333333222346789999999999999999999874 1111234556643 233444444
Q ss_pred HhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCccc----ccccccCcCC-CCCCcEEEEecCChh--------
Q 002655 237 RIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPID----LTELGIPLQS-LNVSSKVVFTTRSLD-------- 303 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~IivTtR~~~-------- 303 (896)
.+.. ... ..+.+.++ +.-+||+||+..... .+.+...+.. ...|..||+||....
T Consensus 196 ~~~~-------~~~----~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 196 ALRN-------NTM----EEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred HHHc-------CcH----HHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 4321 111 22233333 345899999965311 1222221111 123456888876432
Q ss_pred -hhccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 304 -VCGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 304 -v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
+...+.....+++++.+.++-.+++.+++.......+ .++...|++.+.|..-.+.
T Consensus 264 ~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 264 RLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 1233444568999999999999999988754322222 4568888888888765443
No 128
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.2e-06 Score=86.88 Aligned_cols=184 Identities=18% Similarity=0.143 Sum_probs=87.7
Q ss_pred CcEEEcccCcccc-ccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCC-Cccc--cchhhhcCCCCcEEe
Q 002655 538 LRTLLLYRNRISM-ITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFT-VIRE--LPEEMKALVNLRYLN 613 (896)
Q Consensus 538 L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~-~i~~--lp~~i~~L~~L~~L~ 613 (896)
|+.|+|++..++. -...+++.|.+|+.|.|.++..-..+-..|.+-.+|+.|||+.| ++++ +.--+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4445555444321 11233455566666666665322233344555566666666665 4542 222355666666666
Q ss_pred ccccccc-cccccccCC-CCccceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhhhHhhhhccc
Q 002655 614 LEYVYLN-RLPLQLLCN-FTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHAFETFLTFQK 691 (896)
Q Consensus 614 l~~~~l~-~lp~~~i~~-l~~L~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~~~~~~~~~~ 691 (896)
+++|.+. ..-...+.. -.+|..|+++||.+.-.. ..+ . ....
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~--------------sh~-------------------~---tL~~ 310 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK--------------SHL-------------------S---TLVR 310 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh--------------hHH-------------------H---HHHH
Confidence 6666321 111111111 135566666665221100 000 0 0011
Q ss_pred cccceeEEEecccCCCCcccccchhhccccceEEeccCCceeeeeccccccccccccccCcccEEeeccCCCC
Q 002655 692 LLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRL 764 (896)
Q Consensus 692 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 764 (896)
-++++.+|+++++.....-.+..+-.++.|++|.++.|.... ++.+ +.....|+|.+|++.+|-.-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~-----~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETL-----LELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHe-----eeeccCcceEEEEeccccCc
Confidence 244566666666555444333345556777777777776543 2211 11134677778887777433
No 129
>CHL00181 cbbX CbbX; Provisional
Probab=97.85 E-value=0.00034 Score=73.43 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
..+.++|++|+||||+|+.+++... ..+.-...-|+.++ ...+.... .| .........+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~---~~g~~~~~~~~~v~----~~~l~~~~---~g--------~~~~~~~~~l~~- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY---KLGYIKKGHLLTVT----RDDLVGQY---IG--------HTAPKTKEVLKK- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCCCCCceEEec----HHHHHHHH---hc--------cchHHHHHHHHH-
Confidence 3578999999999999999988753 11111111244444 11222111 11 111111112222
Q ss_pred hcCCcEEEEEeccCCc-----------ccccccccCcCCCCCCcEEEEecCChhhhccC--------CCCceEEeccCCh
Q 002655 261 LSRKKFVLLLDDIWQP-----------IDLTELGIPLQSLNVSSKVVFTTRSLDVCGSM--------EADEKIEVKYLVH 321 (896)
Q Consensus 261 l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~ 321 (896)
. ..-+|++|++... +....+...+.....+.+||+++....+...+ .....+.+++++.
T Consensus 121 a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 1 2348999999642 11122222233333456777777543321100 1245789999999
Q ss_pred HHHHHHHHHhhCC
Q 002655 322 DEAWRLFQEKVGE 334 (896)
Q Consensus 322 ~ea~~Lf~~~~~~ 334 (896)
+|..+++...+..
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877643
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.85 E-value=0.0002 Score=86.50 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=97.7
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcC-CCCEEEE-EEeCCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH-HFDVVIW-GVVSREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~f~~~~w-v~~s~~~~~~~~~~~i 234 (896)
..++||+.++.+++..|... ...-+.++|++|+||||+|+.++.......+.. -.+..+| +..+. +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----------l 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----------L 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh----------h
Confidence 35799999999999988776 445667999999999999999999873111111 1122333 22221 0
Q ss_pred HHHhCCCcccccccCHHHHHHHHHHHh--cCCcEEEEEeccCCcc---------cccccccCcCCCCCCcEEEEecCChh
Q 002655 235 GKRIGLSAESWMDKSLEEKALDISNIL--SRKKFVLLLDDIWQPI---------DLTELGIPLQSLNVSSKVVFTTRSLD 303 (896)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~gs~IivTtR~~~ 303 (896)
. . ... .....++....+.+.+ .+++.+|++|++.... +...+..+....+ .-++|-||...+
T Consensus 255 ~----a-g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e 327 (852)
T TIGR03345 255 Q----A-GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAE 327 (852)
T ss_pred h----c-ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHH
Confidence 0 0 000 1112222222333222 2478999999986531 1111222322221 245666665432
Q ss_pred hhccC-------CCCceEEeccCChHHHHHHHHHhhCCccc-CCCccHHHHHHHHHHHcCCc
Q 002655 304 VCGSM-------EADEKIEVKYLVHDEAWRLFQEKVGEATL-RCHSDILELAQTLARECCGL 357 (896)
Q Consensus 304 v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~g~ 357 (896)
....+ .....+.+++++.+++.+++......-.. ..-.-..+....+++.+.+.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 21111 12358999999999999997544321110 00011134456666666544
No 131
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.85 E-value=8.4e-05 Score=76.99 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=105.2
Q ss_pred cccccchhHHHHHHHHHhhccCCCcc-EEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQEKNRG-IIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
.+.|.+|+..+..+...+.+.+...+ .|-|+|..|.|||.+.+++.+... -..+|+++-..++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--------~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--------LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--------CcceeeehHHhccHHHHHHHH
Confidence 46789999999999999987754444 458999999999999999988762 235899999999999999999
Q ss_pred HHHhCCCc-ccccccCHHHH----HHHHHH--Hhc--CCcEEEEEeccCCcccccccccC----cC--CCCCCcEEEEec
Q 002655 235 GKRIGLSA-ESWMDKSLEEK----ALDISN--ILS--RKKFVLLLDDIWQPIDLTELGIP----LQ--SLNVSSKVVFTT 299 (896)
Q Consensus 235 ~~~l~~~~-~~~~~~~~~~~----~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~~~----l~--~~~~gs~IivTt 299 (896)
+.+.+..+ +........+. ...+.+ ... ++.++||||+++...|.+....+ +. ...+.. +|+++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils 155 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILS 155 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEe
Confidence 99986322 11111111111 222222 111 46899999999876555443111 00 111222 33333
Q ss_pred CC--hhh-hccCCCC--ceEEeccCChHHHHHHHHHh
Q 002655 300 RS--LDV-CGSMEAD--EKIEVKYLVHDEAWRLFQEK 331 (896)
Q Consensus 300 R~--~~v-~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 331 (896)
-. +.. ...++.. .++..+.-+.+|...++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 21 111 1223333 34566788888888888654
No 132
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00042 Score=80.32 Aligned_cols=189 Identities=14% Similarity=0.148 Sum_probs=104.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.++...-. ....+ .+ .+..-....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC---~~~~~--~~-------~pC~~C~~~-- 82 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNC---SHKTD--LL-------EPCQECIEN-- 82 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcc---cccCC--CC-------CchhHHHHh--
Confidence 458999999999999987662 3456679999999999999999887621 00000 00 000000000
Q ss_pred HhCCCcccc-----cccCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEE-EecCChh
Q 002655 237 RIGLSAESW-----MDKSLEEKALDISNI-----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVV-FTTRSLD 303 (896)
Q Consensus 237 ~l~~~~~~~-----~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Ii-vTtR~~~ 303 (896)
.+...+-. .....++ ++.+.+. ..+++-++|+|++... ..+..+...+........+| +|++...
T Consensus 83 -~~~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 83 -VNNSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred -hcCCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 00000000 0011121 1222222 2356679999998753 33444444443333344544 5544444
Q ss_pred hhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHHH
Q 002655 304 VCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTIG 365 (896)
Q Consensus 304 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~g 365 (896)
+... ......+++.+++.++..+.+...+........ .+.+..|++.++|.+- |+..+-
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4322 233568999999999999888876543221111 3457789999988764 444443
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.85 E-value=8.7e-05 Score=88.90 Aligned_cols=156 Identities=15% Similarity=0.239 Sum_probs=89.2
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCC-CEEEEEEeCCCCCHHHHHHHHHH
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHF-DVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.+++......+...+ +..+|.. +.. .+..
T Consensus 183 ~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~----~l~a 251 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMG----SLLA 251 (731)
T ss_pred cccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHH----HHhh
Confidence 5899999999999988766 44556799999999999999999987311111111 3344421 111 1111
Q ss_pred HhCCCcccccccCHHHHHHHHHHHh-cCCcEEEEEeccCCcc----------cccccccCcCCCCCC-cEEEEecCChhh
Q 002655 237 RIGLSAESWMDKSLEEKALDISNIL-SRKKFVLLLDDIWQPI----------DLTELGIPLQSLNVS-SKVVFTTRSLDV 304 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~g-s~IivTtR~~~v 304 (896)
... ...+.++....+.+.+ ..++.+|++|+++... +...+..+.. ..| -++|-+|...+.
T Consensus 252 ~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l--~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 252 GTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--SSGKLRCIGSTTYEEY 323 (731)
T ss_pred hcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH--hCCCeEEEEecCHHHH
Confidence 000 1122334444444444 3468999999986421 1122222221 223 345555443222
Q ss_pred hcc-------CCCCceEEeccCChHHHHHHHHHhh
Q 002655 305 CGS-------MEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 305 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
... ......+.+++++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 110 0123578999999999999998654
No 134
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.00015 Score=72.62 Aligned_cols=134 Identities=13% Similarity=-0.004 Sum_probs=78.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
+.+.|+|++|+|||+|++.+++... . .++. ..+ . .. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~-----~~~~--~~~--------------------~--~~--------~~ 82 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----A-----YIIK--DIF--------------------F--NE--------EI 82 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----C-----EEcc--hhh--------------------h--ch--------hH
Confidence 6799999999999999999877641 1 1111 000 0 00 01
Q ss_pred hcCCcEEEEEeccCCccc--ccccccCcCCCCCCcEEEEecCChhh-------hccCCCCceEEeccCChHHHHHHHHHh
Q 002655 261 LSRKKFVLLLDDIWQPID--LTELGIPLQSLNVSSKVVFTTRSLDV-------CGSMEADEKIEVKYLVHDEAWRLFQEK 331 (896)
Q Consensus 261 l~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 331 (896)
. +..-+|++||+...++ +-.+...+. ..|..||+|++.... ...+....++++++++.++-..++.+.
T Consensus 83 ~-~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 83 L-EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred H-hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHH
Confidence 1 1235788999974321 111111111 346789999875433 222334557999999999988888777
Q ss_pred hCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 332 VGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
+.......+ +++.+-|++.+.|---.+.
T Consensus 160 ~~~~~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 160 FSISSVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHHcCCCCC---HHHHHHHHHHccCCHHHHH
Confidence 643222222 4557777777766554443
No 135
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.82 E-value=9.3e-05 Score=74.50 Aligned_cols=182 Identities=12% Similarity=0.119 Sum_probs=111.2
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEE-EEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVV-IWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~-~wv~~s~~~~~~~~~~~i~ 235 (896)
.+++|-+..+..+...+... ..++...+|++|.|||+-|++++...- -..-|.++ .-.++|......-+-..
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~---~~~~~~~rvl~lnaSderGisvvr~K-- 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALN---CEQLFPCRVLELNASDERGISVVREK-- 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhc---Cccccccchhhhcccccccccchhhh--
Confidence 45799999999999988874 788999999999999999999988873 23445433 33344433221100000
Q ss_pred HHhCCCcccccccCHHHHHHHHHHHh--cCCc-EEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCChhh-hcc-C
Q 002655 236 KRIGLSAESWMDKSLEEKALDISNIL--SRKK-FVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSLDV-CGS-M 308 (896)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v-~~~-~ 308 (896)
..+.........+.. ..++ -.+|||+++.. +.|..+...+......++.|+.+..... ... .
T Consensus 109 -----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 -----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred -----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 001111100000000 0123 47899999874 6687776666555566665554443222 111 1
Q ss_pred CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh
Q 002655 309 EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL 359 (896)
Q Consensus 309 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 359 (896)
.....+..++|..++...-+...+..+....+ .+..+.|++.++|---
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHH
Confidence 23457889999999999988888865543333 3457888888887543
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00046 Score=80.14 Aligned_cols=180 Identities=14% Similarity=0.163 Sum_probs=106.5
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhh------------------hcCCCCEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQ------------------RQHHFDVVI 217 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~~~f~~~~ 217 (896)
.+++|.+..++.+..++..+ .. +.+.++|+.|+||||+|+.++....... ...+|+ +.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~ 93 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IH 93 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eE
Confidence 45899999999999998876 44 5578999999999999999888752000 011232 11
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEE
Q 002655 218 WGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKV 295 (896)
Q Consensus 218 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~I 295 (896)
.+..+......++. .+.+++... -..+++-++|+|++... ..+..+...+.....++.+
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 22222111111111 111111110 01245568899998764 3344454444433345665
Q ss_pred EE-ecCChhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 296 VF-TTRSLDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 296 iv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
|+ ||+...+... ......+++.+++.++....+.+.+........ .+.+..|++.++|..--+
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 55 4454444332 234568999999999999999887654332222 345788999999976533
No 137
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.81 E-value=2.8e-06 Score=86.49 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=41.7
Q ss_pred CCCCCCcEEEcccCcccc----ccchhhccCCCccEEeccccccc----ccCCcc-------ccCCCcCcEEeccCCCcc
Q 002655 533 PNCPHLRTLLLYRNRISM----ITDGFFQFMPSLKVLNLGFNIFL----NKLPSG-------LSSLISLEHLDLSFTVIR 597 (896)
Q Consensus 533 ~~~~~L~~L~l~~~~l~~----~~~~~~~~l~~L~~L~L~~~~~~----~~lp~~-------~~~l~~L~~L~l~~~~i~ 597 (896)
..+..+..+++++|.+.. .....+.+.+.|+..++++- .. .++|+. +-..++|++||||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 445556666677665321 11122455566666666653 21 123322 233445666666665332
Q ss_pred -----ccchhhhcCCCCcEEeccccccc
Q 002655 598 -----ELPEEMKALVNLRYLNLEYVYLN 620 (896)
Q Consensus 598 -----~lp~~i~~L~~L~~L~l~~~~l~ 620 (896)
.+-.-+.++.+|++|.+.+|.+.
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 12222344555555555555443
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.8e-05 Score=56.34 Aligned_cols=40 Identities=38% Similarity=0.515 Sum_probs=28.5
Q ss_pred CCccEEecccccccccCCccccCCCcCcEEeccCCCccccc
Q 002655 560 PSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELP 600 (896)
Q Consensus 560 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp 600 (896)
++|++|++++| .++.+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 36777777777 67777766777888888888887777665
No 139
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=2.2e-06 Score=96.03 Aligned_cols=121 Identities=31% Similarity=0.498 Sum_probs=76.7
Q ss_pred cceeeeccccCcccc-CCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccC
Q 002655 515 GFKRISLMENNITSL-SAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSF 593 (896)
Q Consensus 515 ~l~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~ 593 (896)
.+..+++..|.+..+ ..+..+++|..|++.+|.+..+... +..+.+|++|++++| .|..+. .+..+..|+.|++.+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheecc
Confidence 344444555555552 3366667777777777776666543 456777777777777 566654 566666777777777
Q ss_pred CCccccchhhhcCCCCcEEeccccccccccc-cccCCCCccceeeccC
Q 002655 594 TVIRELPEEMKALVNLRYLNLEYVYLNRLPL-QLLCNFTKLQALRMLG 640 (896)
Q Consensus 594 ~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~~i~~l~~L~~L~l~~ 640 (896)
|.|..++ .+..+.+|+.+++++|.+..+.. . ...+.+|+.+.+.+
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGG 195 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccC
Confidence 7776664 34447777777777776666654 1 25566666666665
No 140
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.80 E-value=0.0021 Score=77.58 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=39.3
Q ss_pred cccccchhHHHHHHHHHhhcc----CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 156 ERTVVGQESMLDQVWRCITDQ----EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..+++|.+..++++.+++... .....++.++|++|+|||++|+.+++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999998876421 2234589999999999999999999886
No 141
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00052 Score=76.89 Aligned_cols=178 Identities=15% Similarity=0.163 Sum_probs=103.9
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhh------------------cCCCCEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQR------------------QHHFDVVI 217 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~~~f~~~~ 217 (896)
.+++|.+..++.+..++..+ .. +.+.++|+.|+||||+|+.+++....... ..+++ .+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 46899999999999988765 44 56789999999999999999887631100 00111 11
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCcCCCC
Q 002655 218 WGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI-----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLN 290 (896)
Q Consensus 218 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~ 290 (896)
++..... ...++.. .+.+. ..+++-++|+|+++.. .....+...+....
T Consensus 94 ~i~g~~~-----------------------~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~ 149 (451)
T PRK06305 94 EIDGASH-----------------------RGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP 149 (451)
T ss_pred Eeecccc-----------------------CCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC
Confidence 1110000 0111111 11111 2356778999998653 22333333343333
Q ss_pred CCcEEEEecC-Chhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh-HHHHH
Q 002655 291 VSSKVVFTTR-SLDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL-ALKTI 364 (896)
Q Consensus 291 ~gs~IivTtR-~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL-al~~~ 364 (896)
....+|++|. ...+... ......+++.++++++....+.+.+.......+ .+.+..|++.++|.+- |+..+
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 4556666553 3333222 123467899999999999888877643221122 4557889999999764 44444
No 142
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00081 Score=75.85 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=103.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhc----------------CCCCEEEEEE
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQ----------------HHFDVVIWGV 220 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----------------~~f~~~~wv~ 220 (896)
.+++|-+..+..+..++..+. -.+.+.++|+.|+||||+|+.++......... +.|...+++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 457999999999999987752 23456789999999999999998875200000 0011112221
Q ss_pred eCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCc
Q 002655 221 VSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI-----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSS 293 (896)
Q Consensus 221 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs 293 (896)
.+.. ...++ ...+.+. ..+++-++|+|+++.. .....+...+.......
T Consensus 95 aas~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 95 AASN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred CccC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 1111 11111 1112221 1356679999998754 23334433343333345
Q ss_pred EEEEec-CChhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 294 KVVFTT-RSLDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 294 ~IivTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
.+|++| +...+... ......+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+-.+...
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 555544 43333221 123457899999999999888887643322222 345778888999977544433
No 143
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=2e-06 Score=95.17 Aligned_cols=101 Identities=31% Similarity=0.434 Sum_probs=62.1
Q ss_pred CCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCccccchhhhcCCCCcEEec
Q 002655 535 CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNL 614 (896)
Q Consensus 535 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l 614 (896)
+..|.+.++++|.+..+..+ +.-++.|+.|||++| .+.+.- .+..|.+|++|||++|.+..+|.--..=.+|+.|++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 33455555556655444433 555667777777777 444432 666677777777777777766652222223777777
Q ss_pred cccccccccccccCCCCccceeeccC
Q 002655 615 EYVYLNRLPLQLLCNFTKLQALRMLG 640 (896)
Q Consensus 615 ~~~~l~~lp~~~i~~l~~L~~L~l~~ 640 (896)
++|.++.+-. +.+|.+|+.|++++
T Consensus 240 rnN~l~tL~g--ie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 240 RNNALTTLRG--IENLKSLYGLDLSY 263 (1096)
T ss_pred cccHHHhhhh--HHhhhhhhccchhH
Confidence 7776666653 66777777777765
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.75 E-value=0.00019 Score=77.54 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=82.8
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++... .. ...++.+. .....+...+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~-----~~---~~~i~~~~-~~~~~i~~~l~~ 90 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVG-----AE---VLFVNGSD-CRIDFVRNRLTR 90 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC-----cc---ceEeccCc-ccHHHHHHHHHH
Confidence 457999999999999987652 346777799999999999999988752 11 23344333 111111111111
Q ss_pred HhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--cc-ccccccCcCCCCCCcEEEEecCChhhh-cc-CCCC
Q 002655 237 RIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--ID-LTELGIPLQSLNVSSKVVFTTRSLDVC-GS-MEAD 311 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~-~~~~~~~l~~~~~gs~IivTtR~~~v~-~~-~~~~ 311 (896)
... ...+.+.+-+||+||++.. .+ ...+...+.....++++|+||...... .. .+..
T Consensus 91 ~~~------------------~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 91 FAS------------------TVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHH------------------hhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 000 0001234568999999754 11 122222233334567888888654321 10 1123
Q ss_pred ceEEeccCChHHHHHHHHH
Q 002655 312 EKIEVKYLVHDEAWRLFQE 330 (896)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~ 330 (896)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4667777777777666543
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.0008 Score=78.12 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=108.5
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
..++|.+..+..+..++..+. -.+.+.++|+.|+||||+|+.+++... ....+.. ....+......+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~----c~~~~~~----~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLN----CLNSDKP----TPEPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhc----CCCcCCC----CCCCCcccHHHHHHhc
Confidence 357999999999998888762 235778999999999999999998873 1111100 0011222233333332
Q ss_pred HhCCCc---ccccccCHHHHHHHHHHH----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-hhhhc
Q 002655 237 RIGLSA---ESWMDKSLEEKALDISNI----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-LDVCG 306 (896)
Q Consensus 237 ~l~~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~ 306 (896)
...... +.......++..+.+... ..+++-++|+|+++.. ..+..+...+........+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 221100 000111222222222111 1245668999999764 3344444444333334555555443 33322
Q ss_pred c-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 307 S-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 307 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
. ......+++..++.++....+...+........ .+.+..|++.++|.+..+...
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 123467888899999988888776643321112 345788999999988654433
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.0023 Score=72.81 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=93.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
...+.|+|..|+|||.|++++++... ....-..++++. ..++...+...+.. ... ..+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~---~~~~g~~V~Yit------aeef~~el~~al~~-------~~~----~~f~~ 373 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYAR---RLYPGTRVRYVS------SEEFTNEFINSIRD-------GKG----DSFRR 373 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEee------HHHHHHHHHHHHHh-------ccH----HHHHH
Confidence 45689999999999999999999873 111123456664 33444444433311 111 12333
Q ss_pred HhcCCcEEEEEeccCCcc---ccc-ccccCcCC-CCCCcEEEEecCCh---------hhhccCCCCceEEeccCChHHHH
Q 002655 260 ILSRKKFVLLLDDIWQPI---DLT-ELGIPLQS-LNVSSKVVFTTRSL---------DVCGSMEADEKIEVKYLVHDEAW 325 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~~---~~~-~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~ 325 (896)
.+.+ -=+|||||+.... .|+ .+...+.. ...|..|||||+.. .+...+...-.+++.+.+.+.-.
T Consensus 374 ~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 374 RYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred Hhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 3333 3578899996532 222 22222211 12356788888752 22334455678899999999999
Q ss_pred HHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 326 RLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 326 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
+++.+++.......+ .++..-|++.+.+..-.|
T Consensus 453 aIL~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 453 AILRKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 999988865443333 455677777766554333
No 147
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=0.00012 Score=78.73 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=45.9
Q ss_pred hccCCCccEEecccccccccCCccccCCCcCcEEeccCC-CccccchhhhcCCCCcEEecccc-ccccccc
Q 002655 556 FQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFT-VIRELPEEMKALVNLRYLNLEYV-YLNRLPL 624 (896)
Q Consensus 556 ~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~ 624 (896)
+..+++++.|++++| .+..+|. -..+|+.|++++| .++.+|..+. .+|++|++++| .+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 344678888898888 7888872 2346888888876 6777776552 57888888888 7766664
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00097 Score=76.52 Aligned_cols=192 Identities=12% Similarity=0.098 Sum_probs=106.6
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.... ...... ..+... ..-+.|..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c---~~~~~~---~pC~~C----~~C~~i~~ 84 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNC---VNGPTP---MPCGEC----SSCKSIDN 84 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcc---ccCCCC---CCCccc----hHHHHHHc
Confidence 458999999999999988762 3356889999999999999999888631 110000 000000 00111111
Q ss_pred HhCCCc---ccccccCHHHHHHHH---HH-HhcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-hhhhc
Q 002655 237 RIGLSA---ESWMDKSLEEKALDI---SN-ILSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-LDVCG 306 (896)
Q Consensus 237 ~l~~~~---~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~ 306 (896)
.-.... +.......++..... .. -..+++-++|+|++... ..+..+...+........+|++|.. ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 100000 000011122222111 11 12356678999998764 3344554445443445666665543 33322
Q ss_pred c-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 307 S-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 307 ~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
. ......+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.+-.+.
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 1 123457899999999998888877643321222 4557789999999875443
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.68 E-value=0.00028 Score=77.86 Aligned_cols=172 Identities=20% Similarity=0.184 Sum_probs=95.4
Q ss_pred cccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 158 TVVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
++.|.+..++++.+.+.-. -...+-+.++|++|+|||++|+++++... ..| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~f---i~V~~se--- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS-----ATF---LRVVGSE--- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CCE---EEEecch---
Confidence 4689999999888776421 12345688999999999999999999763 333 1221111
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCcC--C
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPID----------------LTELGIPLQ--S 288 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~ 288 (896)
+... . ...........+.....+.+.+|+||+++.... +..+...+. .
T Consensus 253 ---L~~k----~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 253 ---LIQK----Y-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred ---hhhh----h-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 1111 0 011111111222222345788999999853210 011111111 1
Q ss_pred CCCCcEEEEecCChhhhccC-----CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 289 LNVSSKVVFTTRSLDVCGSM-----EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 289 ~~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
...+.+||+||...+..... .....+.++..+.++..++|.............+ ...++..+.|+-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 12356788888765543221 2346789999999999999987765433222222 344555554443
No 150
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.68 E-value=0.0005 Score=75.40 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=96.2
Q ss_pred ccccchhHHHHHHHHHhhc----c-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC
Q 002655 157 RTVVGQESMLDQVWRCITD----Q-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP 225 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~ 225 (896)
.++.|.+..++++.+.+.- . -...+-+.++|++|.|||++|+++++... ..| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~f---i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATF---IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCE---EEEeh----
Confidence 3578999888888776531 0 12356788999999999999999998762 333 22211
Q ss_pred CHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc------------c----ccccccCcC--
Q 002655 226 KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI------------D----LTELGIPLQ-- 287 (896)
Q Consensus 226 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~-- 287 (896)
..+.... + ..........+.......+.+|++|+++... . +..+...+.
T Consensus 213 --s~l~~k~---~--------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 --SEFVQKY---L--------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred --HHHHHHh---c--------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1111111 1 1111112222222335678999999986421 0 111111111
Q ss_pred CCCCCcEEEEecCChhhhcc--C---CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 288 SLNVSSKVVFTTRSLDVCGS--M---EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 288 ~~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
....+..||+||...+.... . .....+.++..+.++..++|.............+ ..++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 11235678888876544321 1 2345788999999998888876654333222222 345566665554
No 151
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=9.1e-05 Score=79.58 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=57.3
Q ss_pred CcccceeeeccccCccccCCCCCCCCCcEEEcccCc-cccccchhhccCCCccEEecccccccccCCccccCCCcCcEEe
Q 002655 512 DWEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNR-ISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLD 590 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~ 590 (896)
.+.++++|++.++.+..+|.++ ++|++|.+++|. ++.+|.. + .++|++|++++|..+..+|.+ |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEE
Confidence 3457788889888888777443 369999998865 6666654 2 357999999988777777754 55666
Q ss_pred ccCC---Cccccchhhh
Q 002655 591 LSFT---VIRELPEEMK 604 (896)
Q Consensus 591 l~~~---~i~~lp~~i~ 604 (896)
++++ .+..+|.++.
T Consensus 119 L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 119 IKGSATDSIKNVPNGLT 135 (426)
T ss_pred eCCCCCcccccCcchHh
Confidence 6654 3566776544
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.67 E-value=0.0002 Score=86.98 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=88.4
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCC-CEEEEEEeCCCCCHHHHHHHHHH
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHF-DVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||+++++++++.|... ..+-+.++|++|+|||++|+.++......++.... +..+|.- +... +..
T Consensus 180 ~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~----l~a 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGL----LLA 248 (821)
T ss_pred CCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHH----Hhc
Confidence 4799999999999999876 34455799999999999999999887311111111 2344431 1111 111
Q ss_pred HhCCCcccccccCHHHHHHHHHHHh-cCCcEEEEEeccCCcc---------cccccccCcCCCCCCcEEEEecCChhhhc
Q 002655 237 RIGLSAESWMDKSLEEKALDISNIL-SRKKFVLLLDDIWQPI---------DLTELGIPLQSLNVSSKVVFTTRSLDVCG 306 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~gs~IivTtR~~~v~~ 306 (896)
|.. ...+.++....+.+.+ ..++.+|++|++.... +...+..+....+ .-++|.+|...+...
T Consensus 249 --g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 --GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRK 321 (821)
T ss_pred --cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHH
Confidence 111 1122333444443333 3578999999986321 1222222221112 235665665444311
Q ss_pred ------c-CCCCceEEeccCChHHHHHHHHHh
Q 002655 307 ------S-MEADEKIEVKYLVHDEAWRLFQEK 331 (896)
Q Consensus 307 ------~-~~~~~~~~l~~L~~~ea~~Lf~~~ 331 (896)
. ......+.+...+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 0 112356788889999988887654
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=1.6e-06 Score=95.89 Aligned_cols=123 Identities=24% Similarity=0.402 Sum_probs=75.4
Q ss_pred cccceeeeccccCccccCC-CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCcc-ccCCCcCcEEe
Q 002655 513 WEGFKRISLMENNITSLSA-IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSG-LSSLISLEHLD 590 (896)
Q Consensus 513 ~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~~~l~~L~~L~ 590 (896)
|..+...++++|.+..+.. +.-++.|+.|+|+.|.+.+.. ++..+++|+.|||++| .+..+|.- ...+ +|+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hheeee
Confidence 4456666666666665533 455567777777777766654 3666777777777777 56666531 1122 377777
Q ss_pred ccCCCccccchhhhcCCCCcEEeccccccccccc-cccCCCCccceeeccC
Q 002655 591 LSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPL-QLLCNFTKLQALRMLG 640 (896)
Q Consensus 591 l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~~i~~l~~L~~L~l~~ 640 (896)
+++|.++.| .+|.+|++|+.||+++|-+..... .-++.|..|+.|++.|
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence 777777766 366777777777777774332211 1145566666666666
No 154
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.0019 Score=63.89 Aligned_cols=180 Identities=17% Similarity=0.196 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVS-REPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
+.+++.++|.-|.|||.++++...... =+.++-+.+. +..+...+...|...+............+.....+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-------~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-------EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-------CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 457999999999999999996554431 1222223433 34467788888888887632211122233344444
Q ss_pred HHHh-cCCc-EEEEEeccCCc--ccccccccCcC---CCCCCcEEEEecCChhhhc--------cCC-CCce-EEeccCC
Q 002655 258 SNIL-SRKK-FVLLLDDIWQP--IDLTELGIPLQ---SLNVSSKVVFTTRSLDVCG--------SME-ADEK-IEVKYLV 320 (896)
Q Consensus 258 ~~~l-~~k~-~LlVlDdv~~~--~~~~~~~~~l~---~~~~gs~IivTtR~~~v~~--------~~~-~~~~-~~l~~L~ 320 (896)
.... +++| ..+++||..+. ..++.+..... ....--+|+..-. +.+.. ... .... |++.|++
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcC
Confidence 4444 4566 89999998753 22332211111 1111112333221 11111 111 1123 8999999
Q ss_pred hHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHH
Q 002655 321 HDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGR 366 (896)
Q Consensus 321 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~ 366 (896)
.++...++..+..+.....+---.+....|.....|.|.+|..++.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999888775443222222245678899999999999987763
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0012 Score=70.64 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=59.9
Q ss_pred CCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCChhh-hcc-CCCCceEEeccCChHHHHHHHHHhhCCcccC
Q 002655 263 RKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSLDV-CGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLR 338 (896)
Q Consensus 263 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 338 (896)
+++-++|+|+++.. .....+...+.....++.+|+||.+.+. ... .+....+.+.+++.+++.+.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 34455678999864 3333443344333356777777776543 222 23356799999999999999977642111
Q ss_pred CCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 339 CHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 339 ~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
.+.+..++..++|.|.....+
T Consensus 183 -----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 -----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHH
Confidence 233567789999999765544
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.60 E-value=0.00037 Score=84.44 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=87.2
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCC-CC-EEEEEEeCCCCCHHHHHHHHH
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHH-FD-VVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~-f~-~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.++||+.++.++++.|... ...-+.++|++|+|||++|+.++.......+-.. .. .++++.++. +.
T Consensus 179 ~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~---- 246 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 246 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----
Confidence 4899999999999999876 4456669999999999999999988731111000 12 233332221 10
Q ss_pred HHhCCCcccccccCHHHHHHHHHHHh--cCCcEEEEEeccCCcc---------cccccccCcCCCCCCcEEEEecCChhh
Q 002655 236 KRIGLSAESWMDKSLEEKALDISNIL--SRKKFVLLLDDIWQPI---------DLTELGIPLQSLNVSSKVVFTTRSLDV 304 (896)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~gs~IivTtR~~~v 304 (896)
. +.. .....++....+.+.+ .+++.+|++|++.... +...+..|....+ .-++|-+|...+.
T Consensus 247 a--g~~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~ 319 (857)
T PRK10865 247 A--GAK----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEY 319 (857)
T ss_pred h--ccc----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHH
Confidence 0 000 1112233333333322 2578999999986531 1223333332222 2355655554443
Q ss_pred hcc-------CCCCceEEeccCChHHHHHHHHHhh
Q 002655 305 CGS-------MEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 305 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
... ......+.+...+.++..+++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 110 0122356777778899999886554
No 157
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0016 Score=74.98 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=104.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.+++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++... .....+ ..+++.....+.|..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~---c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVN---CLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc---CCCCCC-------CCCCCccHHHHHHhc
Confidence 468999999999999888752 345677899999999999999987752 111000 011111112222211
Q ss_pred HhCCCcccc---cccCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEec-CChhhh
Q 002655 237 RIGLSAESW---MDKSLEEKALDISNI-----LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTT-RSLDVC 305 (896)
Q Consensus 237 ~l~~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~ 305 (896)
......... .....++. ..+... ..+++-++|+|++... ..+..+...+........+|++| ....+.
T Consensus 85 g~~~dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred CCCCCeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 110000000 01112211 122221 2356678899999754 33444443343323344555444 433332
Q ss_pred cc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 306 GS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 306 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
.. ......+++.+++.++....+...+.......+ .+....|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 21 123467889999999998888877643331222 345778888998877543
No 158
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.58 E-value=0.0001 Score=69.67 Aligned_cols=102 Identities=34% Similarity=0.465 Sum_probs=78.9
Q ss_pred cceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCC--ccccCCCcCcEEecc
Q 002655 515 GFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLP--SGLSSLISLEHLDLS 592 (896)
Q Consensus 515 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~l~ 592 (896)
....+++.+|++..++.++.++.|.+|.+.+|+++.+.+..-..+++|..|.|.+| ++..+. ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 56778899999999999999999999999999999998887777888999999998 666553 235567788888888
Q ss_pred CCCccccch----hhhcCCCCcEEecccc
Q 002655 593 FTVIRELPE----EMKALVNLRYLNLEYV 617 (896)
Q Consensus 593 ~~~i~~lp~----~i~~L~~L~~L~l~~~ 617 (896)
+|.++..+. -+.++++|++||....
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 887765442 3556666666666544
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.0018 Score=69.85 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=85.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC-EEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD-VVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
....+.|+|..|.|||.|++++++... ..... .+++++ .+.....+...+. +.....+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~----~~~~~a~v~y~~------se~f~~~~v~a~~-----------~~~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL----ANGPNARVVYLT------SEDFTNDFVKALR-----------DNEMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH----hhCCCceEEecc------HHHHHHHHHHHHH-----------hhhHHHH
Confidence 478999999999999999999999974 23332 344442 3333444433331 1223345
Q ss_pred HHHhcCCcEEEEEeccCCccc---c-cccccCcCC-CCCCcEEEEecCChh---------hhccCCCCceEEeccCChHH
Q 002655 258 SNILSRKKFVLLLDDIWQPID---L-TELGIPLQS-LNVSSKVVFTTRSLD---------VCGSMEADEKIEVKYLVHDE 323 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e 323 (896)
++.. .-=++++||++-... | +++...+.. ...|..||+|++... +..++..+-.+++.+.+.+.
T Consensus 171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHH
Confidence 5555 444889999975322 2 222222221 223448999986432 23344556789999999999
Q ss_pred HHHHHHHhhCCcccCCC
Q 002655 324 AWRLFQEKVGEATLRCH 340 (896)
Q Consensus 324 a~~Lf~~~~~~~~~~~~ 340 (896)
....+.+++.......+
T Consensus 249 r~aiL~kka~~~~~~i~ 265 (408)
T COG0593 249 RLAILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 99999987755443444
No 160
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0011 Score=73.99 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=88.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
...+.|+|+.|+|||+|++++++... .. ...+++++ ...+...+...+... . ...+++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~----~~-~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~ 198 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR----ES-GGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQ 198 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH----Hc-CCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHH
Confidence 46789999999999999999999874 12 23445554 334444554444211 1 122333
Q ss_pred HhcCCcEEEEEeccCCccc----ccccccCcCC-CCCCcEEEEecCCh---------hhhccCCCCceEEeccCChHHHH
Q 002655 260 ILSRKKFVLLLDDIWQPID----LTELGIPLQS-LNVSSKVVFTTRSL---------DVCGSMEADEKIEVKYLVHDEAW 325 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~ 325 (896)
.+. +.-+|++||+..... .+++...+.. ...|..||+||... .+...+..+..+++.+++.++-.
T Consensus 199 ~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 199 FYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred Hcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHH
Confidence 333 445888999865321 1122222211 12356788888542 22333444568899999999999
Q ss_pred HHHHHhhCCcccCCCccHHHHHHHHHHHcCCc
Q 002655 326 RLFQEKVGEATLRCHSDILELAQTLARECCGL 357 (896)
Q Consensus 326 ~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 357 (896)
.++.+++.......+ .++..-|++.+.|.
T Consensus 278 ~iL~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 278 SFLERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 999888754332222 34455566666543
No 161
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.52 E-value=1.7e-05 Score=88.99 Aligned_cols=110 Identities=26% Similarity=0.435 Sum_probs=94.8
Q ss_pred ccCcccceeeeccccCccccCC-CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcE
Q 002655 510 IKDWEGFKRISLMENNITSLSA-IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEH 588 (896)
Q Consensus 510 ~~~~~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 588 (896)
+..+.++..+++.+|.+..+.. +..+++|++|++++|.++.+.. +..+..|+.|++++| .+..++ .+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 4556789999999999999988 8999999999999999998876 677888999999999 787775 6777999999
Q ss_pred EeccCCCccccchh-hhcCCCCcEEecccccccccc
Q 002655 589 LDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLP 623 (896)
Q Consensus 589 L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp 623 (896)
+++++|.+..++.. ...+.+|+.+.+.++.+..+.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhccc
Confidence 99999999988764 588899999999998665543
No 162
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.52 E-value=0.003 Score=75.56 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=40.6
Q ss_pred cccccchhHHHHHHHHHhhcc----CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 156 ERTVVGQESMLDQVWRCITDQ----EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+.+.+|.++.+++++++|... .....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999988641 2245689999999999999999999875
No 163
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0011 Score=76.71 Aligned_cols=195 Identities=12% Similarity=0.141 Sum_probs=105.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCc-cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNR-GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 235 (896)
.++||.+..++.+..++..+ .+ +.+.++|+.|+||||+|+.+++.... ....+ ...++.......|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c---~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNC---EQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcC---CCCCC-------CCCCCccHHHHHHh
Confidence 46899999999999888766 44 56689999999999999999887621 01000 00111111111111
Q ss_pred HHhCCCc---ccccccCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEec-CChhh
Q 002655 236 KRIGLSA---ESWMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTT-RSLDV 304 (896)
Q Consensus 236 ~~l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v 304 (896)
..-.... +.......++ +..+.+.+ .+++-++|+|+++... ....+...+........+|++| ....+
T Consensus 84 ~g~~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred cCCCCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 1000000 0000111111 11222221 2455689999997642 3334443343333455565544 44444
Q ss_pred hcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch-hHHHHHHHH
Q 002655 305 CGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP-LALKTIGRA 367 (896)
Q Consensus 305 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-Lal~~~g~~ 367 (896)
... ......+++.+++.++....+...+.......+ .+....|++.++|.. .|+..+-..
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 322 223467889999999988888776643321222 345778889998865 455554333
No 164
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0028 Score=67.43 Aligned_cols=198 Identities=14% Similarity=0.114 Sum_probs=108.5
Q ss_pred ccccchhHHHHHHHHHhhccCCC-ccEEEEEcCCCCcHHHHHHHHHhhhhhhhh----------cCCCCEEEEEEeCCCC
Q 002655 157 RTVVGQESMLDQVWRCITDQEKN-RGIIGLYGTGGVGKTTLLKQVNNKFCIEQR----------QHHFDVVIWGVVSREP 225 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~~~f~~~~wv~~s~~~ 225 (896)
.+++|.+..++.+...+..+ . .+...++|+.|+||+++|..+++..-.... .....-..|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 35799999999999998876 4 478899999999999999998887631110 0111122333211000
Q ss_pred CHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEe
Q 002655 226 KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFT 298 (896)
Q Consensus 226 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivT 298 (896)
+-..+-..-++..+...........++ ++.+.+.+ .+++-++|+|+++... ....+...+.... .+.+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi 159 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILI 159 (314)
T ss_pred cccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEE
Confidence 000000111111111000000111222 23344443 3567789999987642 2333333332222 3345555
Q ss_pred cCC-hhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 299 TRS-LDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 299 tR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
|.+ ..+... .+....+.+.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 160 ~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 443 333332 23457899999999999999987753211 0111468899999999765543
No 165
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=1.1e-05 Score=71.01 Aligned_cols=94 Identities=21% Similarity=0.323 Sum_probs=81.8
Q ss_pred CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCccccchhhhcCCCCcE
Q 002655 532 IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRY 611 (896)
Q Consensus 532 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~ 611 (896)
+....+|...++++|.+.++|+.|-..++.+..|+|++| .+..+|..+..++.|+.|+++.|.+...|.-+..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 456677888899999999999998888889999999999 8899999999999999999999999999998888999999
Q ss_pred Eeccccccccccccc
Q 002655 612 LNLEYVYLNRLPLQL 626 (896)
Q Consensus 612 L~l~~~~l~~lp~~~ 626 (896)
|+..++....+|-+.
T Consensus 128 Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 128 LDSPENARAEIDVDL 142 (177)
T ss_pred hcCCCCccccCcHHH
Confidence 999888777777653
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.49 E-value=0.0018 Score=74.17 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=92.8
Q ss_pred ccccchhHHHHHHHHHhh---cc-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 157 RTVVGQESMLDQVWRCIT---DQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
.+++|.+..++++.+.+. .. ....+-+.++|++|+|||++|+++++... ..| +.++
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~-----~~i~---- 120 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPF-----FSIS---- 120 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCe-----eecc----
Confidence 357888777666554432 21 12335688999999999999999988752 222 2222
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc------------ccc----ccccCcC--C
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI------------DLT----ELGIPLQ--S 288 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~~~----~~~~~l~--~ 288 (896)
..++.... . ..........+.......+.+|++||++... ... .+...+. .
T Consensus 121 ~~~~~~~~---~--------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 121 GSDFVEMF---V--------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred HHHHHHHH---h--------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 11111111 0 1112222233333445678999999996521 011 1111111 1
Q ss_pred CCCCcEEEEecCChhhhc-----cCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 289 LNVSSKVVFTTRSLDVCG-----SMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 289 ~~~gs~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
...+-.||.||...+... .-..+..+.++..+.++-.++|...+........ .....+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 123445666665543211 1123467889999998888888877654321111 12457777777743
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.47 E-value=0.00095 Score=81.38 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=87.8
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcC-CCCEEEE-EEeCCCCCHHHHHHHHH
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH-HFDVVIW-GVVSREPKLDKIQDAIG 235 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~f~~~~w-v~~s~~~~~~~~~~~i~ 235 (896)
.++||+.++.+++..|... ...-+.++|++|+|||++|+.++.+.....+-. -....+| +.+ . .+.
T Consensus 174 ~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~----~l~ 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------G----ALI 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------H----HHh
Confidence 4899999999999999776 445566899999999999999988863110100 0122333 221 1 111
Q ss_pred HHhCCCcccccccCHHHHHHHHHHHhc--CCcEEEEEeccCCcc---------cccccccCcCCCCCCcEEEEecCChhh
Q 002655 236 KRIGLSAESWMDKSLEEKALDISNILS--RKKFVLLLDDIWQPI---------DLTELGIPLQSLNVSSKVVFTTRSLDV 304 (896)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~gs~IivTtR~~~v 304 (896)
. +.. ...+.++....+.+.+. +++.+|++|++.... +...+..+....+ .-++|-+|...+.
T Consensus 242 a--~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~ 314 (852)
T TIGR03346 242 A--GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEY 314 (852)
T ss_pred h--cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHH
Confidence 0 000 11123333334433332 468999999987431 1222222322222 2355555554433
Q ss_pred hcc-------CCCCceEEeccCChHHHHHHHHHhh
Q 002655 305 CGS-------MEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 305 ~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
-.. ......+.++..+.++..+++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 110 1123568899999999999887654
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.47 E-value=0.00036 Score=64.31 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~ 204 (896)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999986
No 169
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0085 Score=67.79 Aligned_cols=160 Identities=21% Similarity=0.249 Sum_probs=89.8
Q ss_pred cccccchhHHHHHHHHHhhcc----CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQ----EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQ 231 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 231 (896)
+.+-+|-++..++|++.|.-. .-..+++++||++|+|||.|++.+++... +.|- -+.++.-.|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~-----Rkfv---R~sLGGvrDEAEIR 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG-----RKFV---RISLGGVRDEAEIR 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC-----CCEE---EEecCccccHHHhc
Confidence 445699999999999998542 23457999999999999999999999873 4442 23333333333221
Q ss_pred HHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc---------cccccccC-----cCC-----CCCC
Q 002655 232 DAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI---------DLTELGIP-----LQS-----LNVS 292 (896)
Q Consensus 232 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~-----l~~-----~~~g 292 (896)
.. .....+.-....++.+.+ .+.+.-+++||.++... .+-++..| |.+ .--=
T Consensus 394 GH--------RRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 394 GH--------RRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cc--------cccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 11 111111112222232222 34567789999986421 11111111 110 0012
Q ss_pred cEEE-EecCC-hh-h-hccCCCCceEEeccCChHHHHHHHHHhh
Q 002655 293 SKVV-FTTRS-LD-V-CGSMEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 293 s~Ii-vTtR~-~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
|.|+ |||-| -+ + +..++...++++.+.+++|=.+.-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3443 44433 22 2 2233445789999999999877766654
No 170
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.44 E-value=0.0013 Score=73.83 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=89.0
Q ss_pred cccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 158 TVVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
++.|.+..++++.+.+... -...+-+.++|++|.|||++|+++++...............|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 4678999999888875321 113456889999999999999999998731100111223445544321
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH-hcCCcEEEEEeccCCcc---------cc-----cccccCcCC--C
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI-LSRKKFVLLLDDIWQPI---------DL-----TELGIPLQS--L 289 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~---------~~-----~~~~~~l~~--~ 289 (896)
++.... .+- ............++. -.+++++|+||+++... +. ..+...+.. .
T Consensus 261 --eLl~ky---vGe-----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 --ELLNKY---VGE-----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred --hhcccc---cch-----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 111100 000 000011111222221 13478999999997421 11 112111211 1
Q ss_pred CCCcEEEEecCChhhhcc-----CCCCceEEeccCChHHHHHHHHHhhCC
Q 002655 290 NVSSKVVFTTRSLDVCGS-----MEADEKIEVKYLVHDEAWRLFQEKVGE 334 (896)
Q Consensus 290 ~~gs~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 334 (896)
..+..||.||...+.... -..+..|+++..+.++..++|..+...
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 124455666655443221 123457899999999999999988743
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00057 Score=80.88 Aligned_cols=157 Identities=18% Similarity=0.255 Sum_probs=89.2
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCC-CCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHH-FDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++||++++.++++.|... ...-+.++|++|+|||++|+.++.......+-.. .++.+|.. +.. .+..
T Consensus 187 ~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc
Confidence 4799999999999988875 3345568999999999999999987631111011 23444421 111 1110
Q ss_pred HhCCCcccccccCHHHHHHHHHHHh-cCCcEEEEEeccCCc----------ccccccccCcCCCCCCcEEEEecCChhhh
Q 002655 237 RIGLSAESWMDKSLEEKALDISNIL-SRKKFVLLLDDIWQP----------IDLTELGIPLQSLNVSSKVVFTTRSLDVC 305 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~gs~IivTtR~~~v~ 305 (896)
+.. ...+.++....+.+.+ +.++.+|++|++... .+...+..++... ..-+||-+|...+..
T Consensus 256 --G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~ 328 (758)
T PRK11034 256 --GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFS 328 (758)
T ss_pred --ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHH
Confidence 100 1112333333443433 346789999999642 1122222233222 223555555443321
Q ss_pred cc-------CCCCceEEeccCChHHHHHHHHHhh
Q 002655 306 GS-------MEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 306 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
.. ......+.+++.+.+++.+++....
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 10 0123579999999999999998654
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=0.00051 Score=64.09 Aligned_cols=88 Identities=22% Similarity=0.047 Sum_probs=49.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
..+.|+|++|+||||+|+.++.... .....++++..+........... ....... ............+.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~ 73 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG-----PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALAL 73 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC-----CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHH
Confidence 6789999999999999999988873 21134566655443322222211 0001000 0122233333344444
Q ss_pred hcCC-cEEEEEeccCCcc
Q 002655 261 LSRK-KFVLLLDDIWQPI 277 (896)
Q Consensus 261 l~~k-~~LlVlDdv~~~~ 277 (896)
.... ..++++|++....
T Consensus 74 ~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 74 ARKLKPDVLILDEITSLL 91 (148)
T ss_pred HHhcCCCEEEEECCcccC
Confidence 4443 4999999998753
No 173
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0098 Score=59.71 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=96.9
Q ss_pred ccccchhHHHHHHHHHhhcc---CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ---EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
.+|||-++.++++.=++... ....--+.++|++|.||||||.-+++... ..+. +.-+....-..-+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-----vn~k----~tsGp~leK~gDlaa 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG-----VNLK----ITSGPALEKPGDLAA 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-----CCeE----ecccccccChhhHHH
Confidence 45899998888886666542 33567889999999999999999999873 2221 111100010111122
Q ss_pred HHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc---------cccccccCc-CCCCC-----------C
Q 002655 234 IGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI---------DLTELGIPL-QSLNV-----------S 292 (896)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------~~~~~~~~l-~~~~~-----------g 292 (896)
|+..+. ..=++.+|.+.... ..+++.... -..++ =
T Consensus 97 iLt~Le------------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 97 ILTNLE------------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HHhcCC------------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 222221 12234445543310 011110000 01111 2
Q ss_pred cEEEEecCChhhhccCC--CCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHH
Q 002655 293 SKVVFTTRSLDVCGSME--ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGR 366 (896)
Q Consensus 293 s~IivTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~ 366 (896)
+-|=.|||.-.+...+. ...+.+++..+.+|-.+...+.+..-..... ++-+.+|+++..|-|--..-+-+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHH
Confidence 34557888655433222 2356789999999999998887743322222 44589999999999965444433
No 174
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.39 E-value=0.0061 Score=60.69 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=38.4
Q ss_pred ccccchhHHHHHHHHHhhc--cCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 157 RTVVGQESMLDQVWRCITD--QEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
..++|.|..++.+++-... ......-+.+||..|.|||++++++.+.+.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 4689999999998775432 111456677899999999999999999884
No 175
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=3.9e-05 Score=76.40 Aligned_cols=98 Identities=28% Similarity=0.262 Sum_probs=65.2
Q ss_pred cEEEcccCcccccc--chhhccCCCccEEeccccccccc---CCccccCCCcCcEEeccCCCcc----ccchhhhcCCCC
Q 002655 539 RTLLLYRNRISMIT--DGFFQFMPSLKVLNLGFNIFLNK---LPSGLSSLISLEHLDLSFTVIR----ELPEEMKALVNL 609 (896)
Q Consensus 539 ~~L~l~~~~l~~~~--~~~~~~l~~L~~L~L~~~~~~~~---lp~~~~~l~~L~~L~l~~~~i~----~lp~~i~~L~~L 609 (896)
..|.+.++.+.... ..+-..+.+++.|||.+| .+.. +-..+.+|++|++|+|+.|.+. .+| -.+.||
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl 123 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNL 123 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccce
Confidence 34555566554332 223455788999999999 4543 4445678999999999998654 444 346789
Q ss_pred cEEeccccccc--cccccccCCCCccceeeccCc
Q 002655 610 RYLNLEYVYLN--RLPLQLLCNFTKLQALRMLGC 641 (896)
Q Consensus 610 ~~L~l~~~~l~--~lp~~~i~~l~~L~~L~l~~c 641 (896)
++|-+.++++. ... ..+..++.++.|.++.+
T Consensus 124 ~~lVLNgT~L~w~~~~-s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQST-SSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEEcCCCCChhhhh-hhhhcchhhhhhhhccc
Confidence 99999888543 222 23567788888888774
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=9.3e-05 Score=86.59 Aligned_cols=104 Identities=23% Similarity=0.238 Sum_probs=62.0
Q ss_pred CCCcEEEcccCc--cccccchhhccCCCccEEeccccccc-ccCCccccCCCcCcEEeccCCCccccchhhhcCCCCcEE
Q 002655 536 PHLRTLLLYRNR--ISMITDGFFQFMPSLKVLNLGFNIFL-NKLPSGLSSLISLEHLDLSFTVIRELPEEMKALVNLRYL 612 (896)
Q Consensus 536 ~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 612 (896)
.+|+.|+++|.. .+..+..+-..+|+|+.|.+++-... .++-.-..++++|..||+|+|+++.+ .++++|+||++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567777777754 22233333445677777777764211 12223345667777777777777777 677777777777
Q ss_pred eccccccccccc-cccCCCCccceeeccC
Q 002655 613 NLEYVYLNRLPL-QLLCNFTKLQALRMLG 640 (896)
Q Consensus 613 ~l~~~~l~~lp~-~~i~~l~~L~~L~l~~ 640 (896)
.+++-.+..-.. ..+-+|++|+.|+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 776654433211 1145677777777766
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=9.7e-05 Score=86.45 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=88.1
Q ss_pred ccceeeeccccCccc--c-C-CCCCCCCCcEEEcccCccccc-cchhhccCCCccEEecccccccccCCccccCCCcCcE
Q 002655 514 EGFKRISLMENNITS--L-S-AIPNCPHLRTLLLYRNRISMI-TDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEH 588 (896)
Q Consensus 514 ~~l~~l~l~~~~~~~--l-~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~ 588 (896)
.++++|++.+...-. . . -...+|+|++|.+.+-.+..- -...+.++++|+.||+|++ +++.+ ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 378888887744321 0 1 135689999999988654221 1234678999999999999 88888 68999999999
Q ss_pred EeccCCCccccc--hhhhcCCCCcEEecccccccccc---cc---ccCCCCccceeeccC
Q 002655 589 LDLSFTVIRELP--EEMKALVNLRYLNLEYVYLNRLP---LQ---LLCNFTKLQALRMLG 640 (896)
Q Consensus 589 L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp---~~---~i~~l~~L~~L~l~~ 640 (896)
|.+++-.+..-+ ..+.+|++|++||++.......+ .. .-..|++|+.|+.++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 999987776433 36788999999999987332222 11 013477777777765
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.31 E-value=0.0039 Score=62.84 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=40.9
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEE
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIW 218 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~w 218 (896)
.+.+|......+..++.+. ..+.+.|++|.|||+||.++..+.- ..+.|+.++-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l---~~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEAL---IHKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHH---hcCCeeEEEE
Confidence 3677888888888888654 5999999999999999999988642 1244554443
No 179
>CHL00176 ftsH cell division protein; Validated
Probab=97.29 E-value=0.0032 Score=73.27 Aligned_cols=171 Identities=18% Similarity=0.176 Sum_probs=94.5
Q ss_pred ccccchhHHHHHHHHH---hhccC-------CCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 157 RTVVGQESMLDQVWRC---ITDQE-------KNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~---L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
.+++|.++..+++.+. +.... ...+-+.++|++|+|||++|+++++... .. |+.++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-----~p-----~i~is~--- 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-----VP-----FFSISG--- 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CC-----eeeccH---
Confidence 3578887666655444 33321 1245688999999999999999988652 22 222221
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc------------c----ccccccCcC--C
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI------------D----LTELGIPLQ--S 288 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~--~ 288 (896)
.++.... .+ .........+.+.....+.+|++||++... . +..+...+. .
T Consensus 250 -s~f~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 250 -SEFVEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred -HHHHHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 1111100 01 111222233444456788999999996421 1 111211111 1
Q ss_pred CCCCcEEEEecCChhhhcc-----CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCC
Q 002655 289 LNVSSKVVFTTRSLDVCGS-----MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCG 356 (896)
Q Consensus 289 ~~~gs~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 356 (896)
...+-.||.||...+.... -..+..+.++..+.++-.++++..+...... .......+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 2235567777766443221 1234678899999999999998877542211 12235667777777
No 180
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.28 E-value=0.0042 Score=68.56 Aligned_cols=135 Identities=21% Similarity=0.161 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCC
Q 002655 162 QESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGL 240 (896)
Q Consensus 162 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~ 240 (896)
|...+.++.+.+... . .++.|.|+-++||||+++.+..... .. .+++..-+.. +..++ .
T Consensus 22 ~~~~~~~l~~~~~~~--~-~i~~i~GpR~~GKTtll~~l~~~~~-----~~---~iy~~~~d~~~~~~~l-~-------- 81 (398)
T COG1373 22 RRKLLPRLIKKLDLR--P-FIILILGPRQVGKTTLLKLLIKGLL-----EE---IIYINFDDLRLDRIEL-L-------- 81 (398)
T ss_pred HHhhhHHHHhhcccC--C-cEEEEECCccccHHHHHHHHHhhCC-----cc---eEEEEecchhcchhhH-H--------
Confidence 344455555555444 2 2999999999999999977765542 11 5555432211 11111 1
Q ss_pred CcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhhhc-----c-CCCCceE
Q 002655 241 SAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCG-----S-MEADEKI 314 (896)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~-----~-~~~~~~~ 314 (896)
+....+...-..++..++||.|....+|+.....+.+.++. +|++|+-+..... . .+....+
T Consensus 82 -----------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~ 149 (398)
T COG1373 82 -----------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDL 149 (398)
T ss_pred -----------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeE
Confidence 11111111112277899999999999999887777776666 8898887765522 1 1334678
Q ss_pred EeccCChHHHHHHH
Q 002655 315 EVKYLVHDEAWRLF 328 (896)
Q Consensus 315 ~l~~L~~~ea~~Lf 328 (896)
++-||+..|-..+-
T Consensus 150 ~l~PlSF~Efl~~~ 163 (398)
T COG1373 150 ELYPLSFREFLKLK 163 (398)
T ss_pred EECCCCHHHHHhhc
Confidence 99999999976654
No 181
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0074 Score=62.60 Aligned_cols=181 Identities=22% Similarity=0.218 Sum_probs=104.9
Q ss_pred ccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCH
Q 002655 159 VVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKL 227 (896)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~ 227 (896)
+=|-++.+++|.+...-. -...+-|.++|++|.|||-||++|+++.. ..| +.+.. .
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtF-----Irvvg---S 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATF-----IRVVG---S 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceE-----EEecc---H
Confidence 567788888888775321 12456788999999999999999999862 444 22221 1
Q ss_pred HHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhc-CCcEEEEEeccCCcc----------------cccccccCcCCC-
Q 002655 228 DKIQDAIGKRIGLSAESWMDKSLEEKALDISNILS-RKKFVLLLDDIWQPI----------------DLTELGIPLQSL- 289 (896)
Q Consensus 228 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------------~~~~~~~~l~~~- 289 (896)
+-+++-| | .-..+...+.+.-+ ..+..|.+|.++... ..-++...+..+
T Consensus 220 ElVqKYi----G---------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ELVQKYI----G---------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred HHHHHHh----c---------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 1222222 1 11234444555444 468999999986421 012222333222
Q ss_pred -CCCcEEEEecCChhhhcc-----CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch----h
Q 002655 290 -NVSSKVVFTTRSLDVCGS-----MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP----L 359 (896)
Q Consensus 290 -~~gs~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P----L 359 (896)
...-|||..|...++... -.-++.++++.-+.+.-.+.|.-+.........-+ .+.+++.|.|.- -
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHH
Confidence 235689999887766432 12356788886666666677776665544333333 345566666554 3
Q ss_pred HHHHHHHHhc
Q 002655 360 ALKTIGRAMA 369 (896)
Q Consensus 360 al~~~g~~L~ 369 (896)
|+.+=|++++
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 4444455543
No 182
>PRK08116 hypothetical protein; Validated
Probab=97.25 E-value=0.0013 Score=68.45 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
..+.++|.+|+|||.||.++++... .. ...+++++ ..+++..+....... ...+. ..+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~----~~-~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~----~~~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI----EK-GVPVIFVN------FPQLLNRIKSTYKSS----GKEDE----NEIIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH----Hc-CCeEEEEE------HHHHHHHHHHHHhcc----ccccH----HHHHHH
Confidence 4588999999999999999999984 22 34456664 344555555443211 11112 223344
Q ss_pred hcCCcEEEEEeccCC--cccccc--cccCcCC-CCCCcEEEEecCC
Q 002655 261 LSRKKFVLLLDDIWQ--PIDLTE--LGIPLQS-LNVSSKVVFTTRS 301 (896)
Q Consensus 261 l~~k~~LlVlDdv~~--~~~~~~--~~~~l~~-~~~gs~IivTtR~ 301 (896)
+.+-. ||||||+.. ..+|.. +...+.. ...|..+|+||..
T Consensus 176 l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 176 LVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred hcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44444 899999943 333322 2111111 1245678998864
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0096 Score=63.10 Aligned_cols=174 Identities=14% Similarity=0.077 Sum_probs=94.3
Q ss_pred HHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhh--------------cCCCCEEEEEEeCCCCCHHHH
Q 002655 165 MLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQR--------------QHHFDVVIWGVVSREPKLDKI 230 (896)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------------~~~f~~~~wv~~s~~~~~~~~ 230 (896)
..+.+...+..+. -...+.++|+.|+||+++|..++...-.... ..|.| ..|+......
T Consensus 12 ~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~----- 84 (319)
T PRK08769 12 AYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNR----- 84 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCc-----
Confidence 3455666665541 3356889999999999999998877631100 00111 1111100000
Q ss_pred HHHHHHHhCCCcccc-cccCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCCh
Q 002655 231 QDAIGKRIGLSAESW-MDKSLEEKALDISNIL-----SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSL 302 (896)
Q Consensus 231 ~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~ 302 (896)
..... .....++ +..+.+.+ .+++-++|+|+++... .-..+...+.....++.+|++|.+.
T Consensus 85 ----------~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 85 ----------TGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred ----------ccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 00000 0011222 22233322 2456799999997642 2223333333334567777776653
Q ss_pred -hhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHH
Q 002655 303 -DVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIG 365 (896)
Q Consensus 303 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g 365 (896)
.+... .+....+.+.+++.+++.+.+.+. +. + ...+..++..++|.|+....+.
T Consensus 154 ~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 154 ARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhCchHHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 33322 233567899999999999888654 11 1 2236678999999998665443
No 184
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.22 E-value=0.0022 Score=68.33 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=65.7
Q ss_pred HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCCcc
Q 002655 166 LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDV-VIWGVVSREP-KLDKIQDAIGKRIGLSAE 243 (896)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~ 243 (896)
..++++.+..-. ...-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+.. ++.++++.+...+..+..
T Consensus 120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~----~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVA----ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHH----hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC
Confidence 345777776532 234568999999999999999998873 233344 4676666554 678888888877665321
Q ss_pred ccccc---CHHHHHHHHHHHh--cCCcEEEEEeccCC
Q 002655 244 SWMDK---SLEEKALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 244 ~~~~~---~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
..... ........+.+++ ++++++||+|++..
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 10000 1111222233333 57999999999854
No 185
>PRK08118 topology modulation protein; Reviewed
Probab=97.20 E-value=0.0002 Score=68.68 Aligned_cols=36 Identities=42% Similarity=0.740 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEE
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIW 218 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~w 218 (896)
+.|.|+|++|+||||||+.+++... ....+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~--~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN--IPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC--CCceecchhhc
Confidence 3588999999999999999999874 12245777776
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.008 Score=64.77 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=84.6
Q ss_pred cccc-hhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 158 TVVG-QESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 158 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
.++| -+..++.+...+..+. -.+...++|+.|+||||+|+.+.+..-. ....... .+.....-+.+..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c---~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFC---LERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCC---CCCCCCC-------CCCcCHHHHHHhc
Confidence 3566 5556677777766551 3456789999999999999999887621 1100000 0000011111100
Q ss_pred HhCCCcc-----cccccCHHHHHHHHHHH-----hcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCChh-
Q 002655 237 RIGLSAE-----SWMDKSLEEKALDISNI-----LSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSLD- 303 (896)
Q Consensus 237 ~l~~~~~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~- 303 (896)
. ..++- .......++... +.+. ..+.+-++|+|+++... ....+...+.....++.+|++|.+..
T Consensus 75 ~-~hpD~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 75 G-NHPDVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred C-CCCCEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 0 00000 000111222222 2222 23455679999987642 23344444444445677777776533
Q ss_pred hhcc-CCCCceEEeccCChHHHHHHHHHh
Q 002655 304 VCGS-MEADEKIEVKYLVHDEAWRLFQEK 331 (896)
Q Consensus 304 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 331 (896)
+... .+....+++.+++.++..+.+.+.
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3222 234568999999999998888654
No 187
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.16 E-value=0.022 Score=61.37 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHH-HHHHhhhhhhhhcCCCCEEEEEEeCCC---CCHHHHHHHHHHH
Q 002655 162 QESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLL-KQVNNKFCIEQRQHHFDVVIWGVVSRE---PKLDKIQDAIGKR 237 (896)
Q Consensus 162 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~ 237 (896)
|.+.+++|..||.+. .-..|.|.||-|+||+.|+ .++..+. ..++.++|.+- .+....+..++.+
T Consensus 1 R~e~~~~L~~wL~e~--~~TFIvV~GPrGSGK~elV~d~~L~~r---------~~vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN--PNTFIVVQGPRGSGKRELVMDHVLKDR---------KNVLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhcC--CCeEEEEECCCCCCccHHHHHHHHhCC---------CCEEEEEChHhhhccChHHHHHHHHHh
Confidence 567789999999987 5579999999999999999 6765553 22667766433 2345566667766
Q ss_pred hCCCc-----------------------ccccccCHHHHHHH-------HHH-------------------Hhc---CCc
Q 002655 238 IGLSA-----------------------ESWMDKSLEEKALD-------ISN-------------------ILS---RKK 265 (896)
Q Consensus 238 l~~~~-----------------------~~~~~~~~~~~~~~-------l~~-------------------~l~---~k~ 265 (896)
+|.-+ ..+......+.... |++ +|. .++
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 65311 01111122222211 111 010 136
Q ss_pred EEEEEeccCCc-----------ccccccccCcCCCCCCcEEEEecCChhhhcc----C--CCCceEEeccCChHHHHHHH
Q 002655 266 FVLLLDDIWQP-----------IDLTELGIPLQSLNVSSKVVFTTRSLDVCGS----M--EADEKIEVKYLVHDEAWRLF 328 (896)
Q Consensus 266 ~LlVlDdv~~~-----------~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~----~--~~~~~~~l~~L~~~ea~~Lf 328 (896)
-+||+||.... .+|.. .+. ..+-.+||++|-+...... + ...+.+.|...+++.|..+.
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa---~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAA---SLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHH---HHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 78999998542 12332 221 2344578988877655332 2 23467889999999999999
Q ss_pred HHhhCCcccC-------------C----CccHHHHHHHHHHHcCCchhHHHHHHHHhcCCCCh
Q 002655 329 QEKVGEATLR-------------C----HSDILELAQTLARECCGLPLALKTIGRAMAYKKNP 374 (896)
Q Consensus 329 ~~~~~~~~~~-------------~----~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~~~~ 374 (896)
..+....... . .....+-....++..||--.-+..+++.++...++
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 9888543100 0 01234446778888999999999999988775444
No 188
>PRK07261 topology modulation protein; Provisional
Probab=97.16 E-value=0.00098 Score=64.33 Aligned_cols=66 Identities=24% Similarity=0.497 Sum_probs=41.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNIL 261 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 261 (896)
.|.|+|++|+||||||+.+...... ..-+.|...|-.. +...+.++....+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~--~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC--PVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC--CeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHH
Confidence 4889999999999999999876531 1123455555211 12233455666666677
Q ss_pred cCCcEEEEEeccC
Q 002655 262 SRKKFVLLLDDIW 274 (896)
Q Consensus 262 ~~k~~LlVlDdv~ 274 (896)
.+.+ .|+|+..
T Consensus 57 ~~~~--wIidg~~ 67 (171)
T PRK07261 57 LKHD--WIIDGNY 67 (171)
T ss_pred hCCC--EEEcCcc
Confidence 6666 5778764
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.0034 Score=72.53 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=40.1
Q ss_pred ccccchhHHHHHHHHHhhcc---CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQ---EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.+++|-+..++++..++... ....+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998763 1234679999999999999999998876
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.14 E-value=0.0049 Score=58.83 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=72.0
Q ss_pred chhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhc---------------CCCCEEEEEEeCCCC
Q 002655 161 GQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQ---------------HHFDVVIWGVVSREP 225 (896)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---------------~~f~~~~wv~~s~~~ 225 (896)
|-+...+.+...+..+. -...+.++|+.|+||+++|..+++..-..... ....-..|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 44556666776666551 34578899999999999999998876311111 011112222211110
Q ss_pred CHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEe
Q 002655 226 KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFT 298 (896)
Q Consensus 226 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivT 298 (896)
.....++.. .+.+.+ .+++=++|+||++.. .....+...+.....++++|++
T Consensus 80 --------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 80 --------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp --------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred --------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 011222222 333333 245678999999874 3444554445445568899988
Q ss_pred cCChhh-hcc-CCCCceEEeccCC
Q 002655 299 TRSLDV-CGS-MEADEKIEVKYLV 320 (896)
Q Consensus 299 tR~~~v-~~~-~~~~~~~~l~~L~ 320 (896)
|++.+- ... ......+.+.+++
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 887653 221 1234566666653
No 191
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.13 E-value=0.018 Score=64.88 Aligned_cols=200 Identities=15% Similarity=0.126 Sum_probs=117.9
Q ss_pred ccccchhHHHHHHHHHhhcc---CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhh---cCCCCEEEEEEeCCCCCHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ---EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQR---QHHFDVVIWGVVSREPKLDKI 230 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~~~f~~~~wv~~s~~~~~~~~ 230 (896)
..+-+|+.+..+|.+++..- .+..+.+.|.|.+|.|||+.+..|.+....... -..|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 44679999999999887642 234569999999999999999999886531111 23343 334555555678999
Q ss_pred HHHHHHHhCCCcccccccCHHHHHHHHHHHhc-----CCcEEEEEeccCCc-----ccccccccCcC-CCCCCcEEEEec
Q 002655 231 QDAIGKRIGLSAESWMDKSLEEKALDISNILS-----RKKFVLLLDDIWQP-----IDLTELGIPLQ-SLNVSSKVVFTT 299 (896)
Q Consensus 231 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~-----~~~~~~~~~l~-~~~~gs~IivTt 299 (896)
+..|..++.... .......+.+..+.. .+..+|++|+++.. +.+..+ |. ...++||++|-+
T Consensus 475 Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 475 YEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEE
Confidence 999999987643 233334444555443 46789999997542 112222 22 234677776654
Q ss_pred CC--hhh---------hccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHH
Q 002655 300 RS--LDV---------CGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGR 366 (896)
Q Consensus 300 R~--~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~ 366 (896)
=. .+. +..+ ....+...|.++++-.+....+..+...-.....+=+++.|+.-.|-.-.|+.+.-+
T Consensus 547 IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred ecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 11 111 1111 123566778888877777776664432112222233355555555555555554433
No 192
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=8.2e-05 Score=85.86 Aligned_cols=110 Identities=27% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCCCcEEEcccCc-cccc-cchhhccCCCccEEecccc-cccccCC----ccccCCCcCcEEeccCCC-ccc--cchhhh
Q 002655 535 CPHLRTLLLYRNR-ISMI-TDGFFQFMPSLKVLNLGFN-IFLNKLP----SGLSSLISLEHLDLSFTV-IRE--LPEEMK 604 (896)
Q Consensus 535 ~~~L~~L~l~~~~-l~~~-~~~~~~~l~~L~~L~L~~~-~~~~~lp----~~~~~l~~L~~L~l~~~~-i~~--lp~~i~ 604 (896)
+++|+.|.+.++. +... ...+...+++|+.|+++++ ......+ .....+.+|+.|+++++. ++. +..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666654 2221 1223455667777777652 1111111 122334556666666654 331 111112
Q ss_pred cCCCCcEEeccccc-cccccccc-cCCCCccceeeccCccCC
Q 002655 605 ALVNLRYLNLEYVY-LNRLPLQL-LCNFTKLQALRMLGCSNY 644 (896)
Q Consensus 605 ~L~~L~~L~l~~~~-l~~lp~~~-i~~l~~L~~L~l~~c~~~ 644 (896)
.+++|++|.+.+|. ++...... ...+++|++|++.+|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 24556666555552 32221111 234555666666655443
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.016 Score=61.51 Aligned_cols=176 Identities=10% Similarity=0.048 Sum_probs=94.9
Q ss_pred HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhC-----C
Q 002655 166 LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIG-----L 240 (896)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----~ 240 (896)
.+.+...+..+. -...+.+.|+.|+||+++|+.++...--. .... ...++.-..-+.+...-. +
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~---~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQ---TPQG-------DQPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCC---CCCC-------CCCCCCCHHHHHHhcCCCCCEEEE
Confidence 445555555541 34677799999999999999998876311 1000 001111111111111000 0
Q ss_pred CcccccccCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCCh-hhhcc-CCCC
Q 002655 241 SAESWMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSL-DVCGS-MEAD 311 (896)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~-~~~~ 311 (896)
..........++.. .+.+.+ .+++-++|+|+++... ....+...+.....++.+|++|.+. .+... .+..
T Consensus 80 ~p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 80 EPIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred ccccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 00000011222222 233322 3566688899998642 3334444444444566777777654 34322 2335
Q ss_pred ceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 312 EKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 312 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
..+.+.+++++++.+.+.+..... ...+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 689999999999999988764211 112567788999999644
No 194
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.05 E-value=0.00019 Score=73.59 Aligned_cols=236 Identities=17% Similarity=0.179 Sum_probs=127.8
Q ss_pred CcccceeeeccccCccc-----c-CCCCCCCCCcEEEcccCc----cccccc------hhhccCCCccEEeccccccccc
Q 002655 512 DWEGFKRISLMENNITS-----L-SAIPNCPHLRTLLLYRNR----ISMITD------GFFQFMPSLKVLNLGFNIFLNK 575 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~----l~~~~~------~~~~~l~~L~~L~L~~~~~~~~ 575 (896)
....+..+.+++|.+.. + +.+.+.++|+..+++.-- ...+|+ ..+..+++|++||||.|-.-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34578888998887643 1 225566688888876542 122222 1245677999999999843333
Q ss_pred CCc----cccCCCcCcEEeccCCCccccc--------------hhhhcCCCCcEEecccccccccccc----ccCCCCcc
Q 002655 576 LPS----GLSSLISLEHLDLSFTVIRELP--------------EEMKALVNLRYLNLEYVYLNRLPLQ----LLCNFTKL 633 (896)
Q Consensus 576 lp~----~~~~l~~L~~L~l~~~~i~~lp--------------~~i~~L~~L~~L~l~~~~l~~lp~~----~i~~l~~L 633 (896)
.+. -+..+..|+.|.|.+|.+...- ..+.+-++|+++....|.+.+-+.. .+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 332 3556788999999999876321 1234456788887777766554432 24455666
Q ss_pred ceeeccCccCCCCCccccccccCcchhhhhhccCcCCceeEEEecchhh--hHhhhhccccccceeEEEecccCCCCccc
Q 002655 634 QALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWHA--FETFLTFQKLLSCTESLELTKLYTPMSLN 711 (896)
Q Consensus 634 ~~L~l~~c~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 711 (896)
+.+.+..+.-.+. ........+..+++|+.|++.-+.... ...+..
T Consensus 188 eevr~~qN~I~~e---------G~~al~eal~~~~~LevLdl~DNtft~egs~~Lak----------------------- 235 (382)
T KOG1909|consen 188 EEVRLSQNGIRPE---------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK----------------------- 235 (382)
T ss_pred ceEEEecccccCc---------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-----------------------
Confidence 6666655311110 111233455566666666655332211 111111
Q ss_pred ccchhhccccceEEeccCCceeeeeccccccccccccccCcccEEeeccCCCCCC-----C-cccccCCCCcEEeEecCc
Q 002655 712 VLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKE-----L-TWLVFAPNLKNIDVQNCN 785 (896)
Q Consensus 712 ~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l-~~l~~l~~L~~L~L~~c~ 785 (896)
.++.+++|+.|++++|....-+...+. ..+. ...|+|+.|.+.+|. ++. + ......|.|+.|+|++|.
T Consensus 236 --aL~s~~~L~El~l~dcll~~~Ga~a~~--~al~-~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 --ALSSWPHLRELNLGDCLLENEGAIAFV--DALK-ESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred --HhcccchheeecccccccccccHHHHH--HHHh-ccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 244456677777776655441111110 0011 236677777777663 221 0 123346777777777754
No 195
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.019 Score=62.31 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=88.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
+...+.+.|++|+|||+||..++.. ..|..+--++. + .....++......+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-------S~FPFvKiiSp------e---------------~miG~sEsaKc~~i~ 588 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-------SDFPFVKIISP------E---------------DMIGLSESAKCAHIK 588 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-------cCCCeEEEeCh------H---------------HccCccHHHHHHHHH
Confidence 4567789999999999999999765 45654433321 1 112223333344444
Q ss_pred H----HhcCCcEEEEEeccCCcccccccccCc---------------CCCCCCcEEEEecCChhhhccCCC----CceEE
Q 002655 259 N----ILSRKKFVLLLDDIWQPIDLTELGIPL---------------QSLNVSSKVVFTTRSLDVCGSMEA----DEKIE 315 (896)
Q Consensus 259 ~----~l~~k~~LlVlDdv~~~~~~~~~~~~l---------------~~~~~gs~IivTtR~~~v~~~~~~----~~~~~ 315 (896)
+ ..+..--.||+||+...-+|-.++..+ |..++.--|+-||....+...|+- ...|.
T Consensus 589 k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred HHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 4 345567899999998877765554322 233334456677777888877753 45789
Q ss_pred eccCCh-HHHHHHHHHhh-CCcccCCCccHHHHHHHHHHHc
Q 002655 316 VKYLVH-DEAWRLFQEKV-GEATLRCHSDILELAQTLAREC 354 (896)
Q Consensus 316 l~~L~~-~ea~~Lf~~~~-~~~~~~~~~~~~~~~~~i~~~c 354 (896)
++.++. ++..+.++..- +. +.+...++.+...+|
T Consensus 669 Vpnl~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred cCccCchHHHHHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 999987 77777776543 22 223344556666655
No 196
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.0022 Score=66.21 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
.-+.++|++|+|||.||.++.+... .. ...++|+. ..++...+.... ...+.++. .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~----~~-g~~v~f~~------~~~L~~~l~~a~-------~~~~~~~~----l~~ 164 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI----EN-GWRVLFTR------TTDLVQKLQVAR-------RELQLESA----IAK 164 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH----Hc-CCceeeee------HHHHHHHHHHHH-------hCCcHHHH----HHH
Confidence 4589999999999999999998873 22 33455654 344555553321 11122222 222
Q ss_pred hcCCcEEEEEeccCCc--ccc-c-ccccCcCCCCCCcEEEEecCC
Q 002655 261 LSRKKFVLLLDDIWQP--IDL-T-ELGIPLQSLNVSSKVVFTTRS 301 (896)
Q Consensus 261 l~~k~~LlVlDdv~~~--~~~-~-~~~~~l~~~~~gs~IivTtR~ 301 (896)
+ .+.=|||+||+... .++ . .+...+.....+..+||||..
T Consensus 165 l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 165 L-DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred H-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 2 23459999999542 111 1 122222211122468888874
No 197
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.01 E-value=0.012 Score=61.23 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHH
Q 002655 165 MLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQ 231 (896)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 231 (896)
-++++..++..+ .-+.+.|++|+|||++|+.+++.. .. ..+.+++....+..+++
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l-----g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR-----DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh-----CC---CEEEEeCCccCCHHHHh
Confidence 345555555543 456799999999999999998743 12 24455665555544443
No 198
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.0022 Score=64.40 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEe
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVV 221 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~ 221 (896)
-.++|+|..|+||||++..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~-----~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL-----RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh-----cccCCEEEEEec
Confidence 467899999999999999998876 378877777644
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.023 Score=60.23 Aligned_cols=174 Identities=9% Similarity=0.025 Sum_probs=93.9
Q ss_pred HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCc---
Q 002655 166 LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSA--- 242 (896)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--- 242 (896)
.+++.+.+..+ .-...+.+.|+.|+||+++|+.++...--. ..-+ ..++.-..-+.+... ..++
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~---~~~~--------~~Cg~C~sC~~~~~g-~HPD~~~ 78 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQ---NYQS--------EACGFCHSCELMQSG-NHPDLHV 78 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCC---CCCC--------CCCCCCHHHHHHHcC-CCCCEEE
Confidence 44555555544 134678899999999999999988776211 0000 000000111111100 0000
Q ss_pred ---cc-ccccCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCCh-hhhcc-CC
Q 002655 243 ---ES-WMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSL-DVCGS-ME 309 (896)
Q Consensus 243 ---~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~-~~ 309 (896)
+. ......++. ..+.+.+ .+++-++|+|+++.. .....+...+.....++.+|++|.+. .+... .+
T Consensus 79 i~p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 79 IKPEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred EecCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00 001122222 2233332 245568899999764 23344444444444566776666654 34332 23
Q ss_pred CCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 310 ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 310 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
....+.+.+++.+++.+.+.+... + .+..++..++|.|+....+
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQGI------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcCC------c-----hHHHHHHHcCCCHHHHHHH
Confidence 456889999999999998865421 0 1356789999999877654
No 200
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.017 Score=65.03 Aligned_cols=102 Identities=16% Similarity=0.251 Sum_probs=65.1
Q ss_pred ccccchhHHHHHHHHHhhcc----CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ----EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQD 232 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 232 (896)
.+-+|.++.+++|++++.-. ..+.++++.+|++|+|||.+|+.++.... +.| +-++++.-.|..+|-.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn-----RkF---fRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN-----RKF---FRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC-----Cce---EEEeccccccHHhhcc
Confidence 45699999999999998642 33568999999999999999999999873 344 2345555555444422
Q ss_pred HHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCC
Q 002655 233 AIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 233 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 275 (896)
.=-. ....-....++.+++ .+..+-|+.+|.|+.
T Consensus 483 HRRT--------YVGAMPGkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 483 HRRT--------YVGAMPGKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred ccee--------eeccCChHHHHHHHh-hCCCCceEEeehhhh
Confidence 1111 111122233333333 244566888999864
No 201
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.023 Score=66.26 Aligned_cols=106 Identities=24% Similarity=0.312 Sum_probs=67.3
Q ss_pred ccccchhHHHHHHHHHhhcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDK 229 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~ 229 (896)
..++|-+..++.+.+.+... ....++....|+.|||||-||++++...- +.=+..+-+++|......
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf-----g~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF-----GDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc-----CCCccceeechHHHHHHH-
Confidence 46899999999998887542 23456778899999999999999988762 222455666655443333
Q ss_pred HHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcE-EEEEeccCC
Q 002655 230 IQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKF-VLLLDDIWQ 275 (896)
Q Consensus 230 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 275 (896)
.+.+-+|.++.-.....- -.+.+..+.++| +|.||+|..
T Consensus 565 ---sVSrLIGaPPGYVGyeeG----G~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 ---SVSRLIGAPPGYVGYEEG----GQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred ---HHHHHhCCCCCCceeccc----cchhHhhhcCCCeEEEechhhh
Confidence 333334443321111111 224445567777 888899975
No 202
>PRK12377 putative replication protein; Provisional
Probab=96.88 E-value=0.0064 Score=62.04 Aligned_cols=75 Identities=23% Similarity=0.187 Sum_probs=46.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
+...+.++|.+|+|||+||.++++... .....++++++ .++...+-..... ..... .+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~-----~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l 158 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL-----AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFL 158 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH-----HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHH
Confidence 346889999999999999999999873 22334566654 3444444333211 11111 122
Q ss_pred HHhcCCcEEEEEeccCC
Q 002655 259 NILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~ 275 (896)
+.+ .+--|||+||+..
T Consensus 159 ~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 159 QEL-CKVDLLVLDEIGI 174 (248)
T ss_pred HHh-cCCCEEEEcCCCC
Confidence 223 3566899999943
No 203
>PRK06526 transposase; Provisional
Probab=96.86 E-value=0.0016 Score=66.96 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
..-+.|+|++|+|||+||..+.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 35689999999999999999988763
No 204
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00039 Score=68.82 Aligned_cols=84 Identities=25% Similarity=0.225 Sum_probs=38.0
Q ss_pred ccCCCccEEecccc--cccccCCccccCCCcCcEEeccCCCccccc--hhhhcCCCCcEEeccccccc---cccccccCC
Q 002655 557 QFMPSLKVLNLGFN--IFLNKLPSGLSSLISLEHLDLSFTVIRELP--EEMKALVNLRYLNLEYVYLN---RLPLQLLCN 629 (896)
Q Consensus 557 ~~l~~L~~L~L~~~--~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~---~lp~~~i~~ 629 (896)
..+++|++|.++.| .....++-...++++|++|++++|+|+.+. ..+.++.||..|++.+|... +--..++.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 33444555555444 222233333334455555555555444211 12345555666666665222 222233444
Q ss_pred CCccceeeccC
Q 002655 630 FTKLQALRMLG 640 (896)
Q Consensus 630 l~~L~~L~l~~ 640 (896)
+++|..|+-.+
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 56666665544
No 205
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.85 E-value=0.016 Score=57.24 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=98.0
Q ss_pred ccccchhHHHHH---HHHHhhcc----CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHH
Q 002655 157 RTVVGQESMLDQ---VWRCITDQ----EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDK 229 (896)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~ 229 (896)
+++||.++...+ |++.|.+. +...+-|..+|++|.|||-+|+++++... -.| +-|. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k-----vp~---l~vk------at- 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK-----VPL---LLVK------AT- 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC-----Cce---EEec------hH-
Confidence 457898877654 56677654 45678899999999999999999999862 222 1111 11
Q ss_pred HHHHHHHHhCCCcccccccCHHHHHHHHHHHh-cCCcEEEEEeccCCc----------cccccccc----CcC--CCCCC
Q 002655 230 IQDAIGKRIGLSAESWMDKSLEEKALDISNIL-SRKKFVLLLDDIWQP----------IDLTELGI----PLQ--SLNVS 292 (896)
Q Consensus 230 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~----~l~--~~~~g 292 (896)
.-|.+..| +....+..+.+.- +.-++++.+|.++.. .+..++.. .+. ..+.|
T Consensus 186 --~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 186 --ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred --HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 11222111 2233344444433 447899999987642 12222211 221 12346
Q ss_pred cEEEEecCChhhhccC---CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCc
Q 002655 293 SKVVFTTRSLDVCGSM---EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGL 357 (896)
Q Consensus 293 s~IivTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 357 (896)
-..|..|.+.+..... .....|+..--+++|-.+++...+..-....... .+.++++.+|.
T Consensus 255 VvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 255 VVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred eEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 5666667666654321 1234677777788888888888775443222222 45556666554
No 206
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.85 E-value=0.014 Score=65.84 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=89.6
Q ss_pred cccchhHHHHHHHHHh---hc-----cCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHH
Q 002655 158 TVVGQESMLDQVWRCI---TD-----QEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDK 229 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L---~~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~ 229 (896)
++.|.+..++.+.+.. .. +-...+-|.++|++|.|||.+|+++++... ..| +-+..+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~-----~~~---~~l~~~~------ 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ-----LPL---LRLDVGK------ 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCE---EEEEhHH------
Confidence 4677776665554421 11 112346788999999999999999998762 222 1122111
Q ss_pred HHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCccc----c----------cccccCcCCCCCCcEE
Q 002655 230 IQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPID----L----------TELGIPLQSLNVSSKV 295 (896)
Q Consensus 230 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~----------~~~~~~l~~~~~gs~I 295 (896)
+... ..+.+.......+...-...+++|++|+++.... . ..+...+.....+--|
T Consensus 295 ----l~~~-------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 295 ----LFGG-------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ----hccc-------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1100 0111122222222222245789999999974210 0 0011111112223346
Q ss_pred EEecCChhhh-----ccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 296 VFTTRSLDVC-----GSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 296 ivTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
|.||.+.+.. ..-..+..+.++.-+.++-.++|............. ......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 6677654431 111235678888889999999998776543211100 112456666666554
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.04 Score=59.07 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=57.4
Q ss_pred CCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCC-hhhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccC
Q 002655 263 RKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRS-LDVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLR 338 (896)
Q Consensus 263 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 338 (896)
+++-++|+|+++.. .....+...+.....++.+|++|.+ ..+... .+....+.+.+++.++..+.+.+.. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C----
Confidence 45568889999764 3344444445444556766666655 444332 2335789999999999999987651 1
Q ss_pred CCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 339 CHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 339 ~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
++ ...++..++|.|.....+
T Consensus 206 -~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 233577889999755443
No 208
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.84 E-value=0.089 Score=64.23 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=61.7
Q ss_pred cccccchhHHHHHHHHHhhcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLD 228 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 228 (896)
...++|-+..++.+...+... .....++.++|+.|+|||+||+.+++..- ..-...+-++.+...+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~-----~~~~~~~~~d~s~~~~~~ 582 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF-----GSEDAMIRLDMSEYMEKH 582 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCccceEEEEchhccccc
Confidence 356899999999998887532 11234677899999999999999988762 112334455554433222
Q ss_pred HHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCc-EEEEEeccCC
Q 002655 229 KIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKK-FVLLLDDIWQ 275 (896)
Q Consensus 229 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~ 275 (896)
.+.+ -+|.+.. ..+.+.. ..+.+.+..++ .+|+||+++.
T Consensus 583 ~~~~----l~g~~~g-yvg~~~~---~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 583 TVSK----LIGSPPG-YVGYNEG---GQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred cHHH----hcCCCCc-ccCcCcc---chHHHHHHhCCCeEEEECChhh
Confidence 2211 1222211 1111111 12334444454 5889999975
No 209
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.83 E-value=0.0059 Score=62.20 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHH-hC---CCcccccccCHHH--
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKR-IG---LSAESWMDKSLEE-- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~---~~~~~~~~~~~~~-- 252 (896)
...++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+. +++.. .. ....-....+..+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~-----~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA-----KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQS 94 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHH
Confidence 457999999999999999999988763 234678999887 55554433 23222 00 0000001122222
Q ss_pred -HHHHHHHHhcCCcEEEEEeccC
Q 002655 253 -KALDISNILSRKKFVLLLDDIW 274 (896)
Q Consensus 253 -~~~~l~~~l~~k~~LlVlDdv~ 274 (896)
....+.+.+..+.-++|+|.+.
T Consensus 95 ~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 95 EAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHHHhcccEEEEeCcH
Confidence 2333444444667788888874
No 210
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.014 Score=70.35 Aligned_cols=173 Identities=17% Similarity=0.137 Sum_probs=92.1
Q ss_pred cccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 158 TVVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
++.|.+..++++.+.+... -...+-+.++|++|+|||+||+.+++... ..| +.+..+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~---i~i~~~---- 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYF---ISINGP---- 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeE---EEEecH----
Confidence 4789999999988776321 12345688999999999999999988762 222 222211
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--------c-----ccccccCcCC-CCCC
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--------D-----LTELGIPLQS-LNVS 292 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~~-~~~g 292 (896)
++. ... ...........+.......+.+|++|+++... . ...+...+.. ...+
T Consensus 247 --~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 247 --EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred --HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 111 000 11112222223333345677899999985421 0 1111111111 1223
Q ss_pred cEEEE-ecCChhhh-ccC----CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchh
Q 002655 293 SKVVF-TTRSLDVC-GSM----EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPL 359 (896)
Q Consensus 293 s~Iiv-TtR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PL 359 (896)
..+++ ||....-. ..+ .....+.+...+.++-.+++............ .....+++.+.|.--
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 34444 44433211 111 12356788888888888888765433221111 125667778877653
No 211
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.77 E-value=0.0067 Score=64.22 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHhhccC--CCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002655 161 GQESMLDQVWRCITDQE--KNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRI 238 (896)
Q Consensus 161 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 238 (896)
+|........+++..-. ...+-+.++|..|+|||.||.++++... ...+ .+.++++ ..+...+....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~----~~g~-~v~~~~~------~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA----KKGV-SSTLLHF------PEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH----HcCC-CEEEEEH------HHHHHHHHHHH
Confidence 45555555566665321 1346799999999999999999999984 3333 3555554 34555554443
Q ss_pred CCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccc--cccCc-CCC-CCCcEEEEecC
Q 002655 239 GLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP--IDLTE--LGIPL-QSL-NVSSKVVFTTR 300 (896)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--~~~~l-~~~-~~gs~IivTtR 300 (896)
+- .+..+. .+.+ .+-=||||||+... .+|.. +...+ ... ..+-.+|+||-
T Consensus 204 ~~-------~~~~~~----l~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 204 SD-------GSVKEK----IDAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hc-------CcHHHH----HHHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 21 122222 2222 24568999998543 34542 32222 211 23556788875
No 212
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.76 E-value=0.0016 Score=69.00 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=41.3
Q ss_pred cccchhHHHHHHHHHhhcc----CCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 158 TVVGQESMLDQVWRCITDQ----EKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
+++|.++.++++++++... +...++++++|++|+||||||+.+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999998653 22458899999999999999999998873
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.75 E-value=0.0072 Score=59.52 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCcccc-cccCHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSAESW-MDKSLEEKALDI 257 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l 257 (896)
++|+.++|+.|+||||.+-+++.... . . -..+..++.... ....+-++..++.++++.... ...+..+.....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~-~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---L-K-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---H-T-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---h-c-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 36899999999999999888888774 2 2 445666665433 235567888899998764221 122343433333
Q ss_pred HHHhcC-CcEEEEEeccC
Q 002655 258 SNILSR-KKFVLLLDDIW 274 (896)
Q Consensus 258 ~~~l~~-k~~LlVlDdv~ 274 (896)
.+.... +.=+|++|=.-
T Consensus 76 l~~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHHHTTSSEEEEEE-S
T ss_pred HHHHhhcCCCEEEEecCC
Confidence 333333 33477777653
No 214
>PRK04296 thymidine kinase; Provisional
Probab=96.75 E-value=0.0021 Score=63.22 Aligned_cols=114 Identities=20% Similarity=0.064 Sum_probs=64.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
.++.|+|..|.||||+|..++.+.. .+-..++.+. ..++.......++.+++...........++....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~-----~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE-----ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-----HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence 4678999999999999999988873 2223333332 1112222234456666643322122334455555544
Q ss_pred hcCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCChhh
Q 002655 261 LSRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSLDV 304 (896)
Q Consensus 261 l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v 304 (896)
..++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 3345569999999542 2223232222 2457789999987543
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.74 E-value=0.012 Score=71.73 Aligned_cols=49 Identities=31% Similarity=0.453 Sum_probs=38.9
Q ss_pred cccccchhHHHHHHHHHhhcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 156 ERTVVGQESMLDQVWRCITDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...++|.+..++.+...+... .....++.++|+.|+|||++|+.+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999988887642 1123578899999999999999998765
No 216
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.022 Score=62.99 Aligned_cols=188 Identities=16% Similarity=0.099 Sum_probs=99.3
Q ss_pred ccccchhHHHHHHHHHhhc---c-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 157 RTVVGQESMLDQVWRCITD---Q-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
.++=|.+..+.++.+.+.. . -...+-|.++|++|.|||.||+++++... -.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-----vPf-----~~isAp-- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-----VPF-----LSISAP-- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-----Cce-----Eeecch--
Confidence 3467889888888876532 1 11346788999999999999999999873 222 233221
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--------cc-----cccc---cCcC---
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--------DL-----TELG---IPLQ--- 287 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~-----~~~~---~~l~--- 287 (896)
+|...+ .+.+++...+.+.+.-...++++++|+++... +. ..+. ..+.
T Consensus 258 ------eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 258 ------EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ------hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 111111 22333334444445556789999999996421 10 1111 1111
Q ss_pred CCCCCcEEEEecCChhhh----ccCC-CCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 288 SLNVSSKVVFTTRSLDVC----GSME-ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 288 ~~~~gs~IivTtR~~~v~----~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
..+.+--||-+|..++.. +..+ .++.|.+.--++..-.+++...+.+-.....-++.++|+.--...|.--.|+.
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~ 404 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALC 404 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHH
Confidence 112232333334333331 1112 34678888777777777777666443333333444444333333333344555
Q ss_pred HHHHHhc
Q 002655 363 TIGRAMA 369 (896)
Q Consensus 363 ~~g~~L~ 369 (896)
..|+..+
T Consensus 405 ~~Aa~vA 411 (802)
T KOG0733|consen 405 REAAFVA 411 (802)
T ss_pred HHHHHHH
Confidence 5555443
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.034 Score=59.69 Aligned_cols=177 Identities=10% Similarity=-0.007 Sum_probs=94.9
Q ss_pred HHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC---
Q 002655 165 MLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLS--- 241 (896)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--- 241 (896)
.-+++...+..+. -...+.+.|+.|+||+++|..++...--. ...+. ..++.-..-+.+.. ...+
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~---~~~~~-------~~Cg~C~sC~~~~~-g~HPD~~ 77 (334)
T PRK07993 10 DYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQ---QPQGH-------KSCGHCRGCQLMQA-GTHPDYY 77 (334)
T ss_pred HHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCC---CCCCC-------CCCCCCHHHHHHHc-CCCCCEE
Confidence 3455666665541 34677899999999999999988776210 00000 00000001111100 0000
Q ss_pred ---cccc-cccCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCcCCCCCCcEEEEecCChh-hhcc-C
Q 002655 242 ---AESW-MDKSLEEKALDISNIL-----SRKKFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVVFTTRSLD-VCGS-M 308 (896)
Q Consensus 242 ---~~~~-~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~ 308 (896)
.+.. .....++.. .+.+.+ .+++-++|+|+++.. ..-..+...+.....++.+|++|.+.+ +... .
T Consensus 78 ~i~p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred EEecccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 011222222 233322 356678999998764 233334444443445677777766543 4332 2
Q ss_pred CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHH
Q 002655 309 EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALK 362 (896)
Q Consensus 309 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~ 362 (896)
+....+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 33567899999999999888654321 1 2236788999999996443
No 218
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.72 E-value=0.0064 Score=58.80 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=40.0
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.++||-++.++++--...++ +.+-+.|.||+|+||||-+..+++..
T Consensus 27 ~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 46899999999987776666 78889999999999999999988887
No 219
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.72 E-value=0.0034 Score=76.00 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=39.7
Q ss_pred cccccchhHHHHHHHHHhhc-------cCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 156 ERTVVGQESMLDQVWRCITD-------QEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...++|.+..++.+.+.+.. ......++.++|++|+|||.+|+.++...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999988753 12234578999999999999999998776
No 220
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.71 E-value=0.00015 Score=63.88 Aligned_cols=87 Identities=32% Similarity=0.446 Sum_probs=77.3
Q ss_pred cceeeeccccCccccCC--CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEecc
Q 002655 515 GFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLS 592 (896)
Q Consensus 515 ~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~ 592 (896)
.+..+++++|.++.+|. ...++-+.+|++.+|.+..+|.. +..++.||.|+++.| .+...|.-+-.|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence 56778999999998865 35667899999999999999999 888999999999999 888889999999999999999
Q ss_pred CCCccccchhh
Q 002655 593 FTVIRELPEEM 603 (896)
Q Consensus 593 ~~~i~~lp~~i 603 (896)
++.+..+|-.+
T Consensus 132 ~na~~eid~dl 142 (177)
T KOG4579|consen 132 ENARAEIDVDL 142 (177)
T ss_pred CCccccCcHHH
Confidence 99998888764
No 221
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.71 E-value=0.017 Score=58.80 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCC------CEEEEEEeCCCCCHHHHHHHHHHHhCCCcc----c---c
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHF------DVVIWGVVSREPKLDKIQDAIGKRIGLSAE----S---W 245 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~ 245 (896)
...++.|+|.+|+|||++|..++.... ..- ..++|+.....++...+. .+++..+.... . .
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~-----~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~ 91 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ-----LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVA 91 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh-----cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEE
Confidence 457999999999999999999877652 222 578899987776665443 33333322110 0 1
Q ss_pred cccCHHHHHHHHHHHhc----CCcEEEEEeccCC
Q 002655 246 MDKSLEEKALDISNILS----RKKFVLLLDDIWQ 275 (896)
Q Consensus 246 ~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~ 275 (896)
...+.++....+.+... .+.-+||+|.+..
T Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 92 RPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred eCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 12344555555554432 3556899999753
No 222
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.69 E-value=0.0065 Score=74.22 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=46.1
Q ss_pred cccccchhHHHHHHHHHhhcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC
Q 002655 156 ERTVVGQESMLDQVWRCITDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE 224 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~ 224 (896)
...++|.+..++.+.+.+... .....++.++|++|+|||++|+.+..... ..-...+.++++..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~-----~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF-----DDEDAMVRIDMSEY 634 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc-----CCCCcEEEEechhh
Confidence 356899999999999988652 11245788999999999999999988762 22234455555543
No 223
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.67 E-value=0.0015 Score=59.07 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 224
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.66 E-value=0.0069 Score=59.44 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC--C----HHH-----
Q 002655 161 GQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP--K----LDK----- 229 (896)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~--~----~~~----- 229 (896)
.+..+....++.|.. ..++.+.|++|.|||.||.+.+-+.- ..+.|+.++++.-.-.. + +..
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v---~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELV---KEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHH---HTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHH---HhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 344555666777763 47999999999999999999887663 45888888887532210 0 000
Q ss_pred --HHHHHHHHhCCCcccccccCHHHHHHH------HHHHhcCC---cEEEEEeccCCc--ccccccccCcCCCCCCcEEE
Q 002655 230 --IQDAIGKRIGLSAESWMDKSLEEKALD------ISNILSRK---KFVLLLDDIWQP--IDLTELGIPLQSLNVSSKVV 296 (896)
Q Consensus 230 --~~~~i~~~l~~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Ii 296 (896)
....+...+..-. .....+..... -..+++++ ..+||+|++.+. .++..+ +...+.|||||
T Consensus 77 ~p~~~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii 150 (205)
T PF02562_consen 77 EPYLRPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKII 150 (205)
T ss_dssp -TTTHHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEE
T ss_pred HHHHHHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEE
Confidence 1111111111100 01111211110 01223443 569999999764 455555 34457899999
Q ss_pred EecCC
Q 002655 297 FTTRS 301 (896)
Q Consensus 297 vTtR~ 301 (896)
++--.
T Consensus 151 ~~GD~ 155 (205)
T PF02562_consen 151 ITGDP 155 (205)
T ss_dssp EEE--
T ss_pred EecCc
Confidence 98644
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=96.64 E-value=0.0021 Score=66.58 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999998775
No 226
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0097 Score=66.86 Aligned_cols=160 Identities=20% Similarity=0.128 Sum_probs=87.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC--CHHHHHHHHHHHhCCCcccccccCHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP--KLDKIQDAIGKRIGLSAESWMDKSLEEKALD 256 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 256 (896)
...-|.|.|+.|+|||+||+++++... +...-.+..|+++.-. ..+.+++.+ ...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~----k~~~~hv~~v~Cs~l~~~~~e~iQk~l-------------------~~v 486 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS----KDLIAHVEIVSCSTLDGSSLEKIQKFL-------------------NNV 486 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc----cccceEEEEEechhccchhHHHHHHHH-------------------HHH
Confidence 346788999999999999999999983 5555567777776432 122222222 122
Q ss_pred HHHHhcCCcEEEEEeccCCc--------ccccc----cccCc-----CCCCCCcE--EEEecCChhhhcc-C----CCCc
Q 002655 257 ISNILSRKKFVLLLDDIWQP--------IDLTE----LGIPL-----QSLNVSSK--VVFTTRSLDVCGS-M----EADE 312 (896)
Q Consensus 257 l~~~l~~k~~LlVlDdv~~~--------~~~~~----~~~~l-----~~~~~gs~--IivTtR~~~v~~~-~----~~~~ 312 (896)
+...+...+-+|||||++.. .+|.. +...+ .....+.+ +|.|.....-... . -...
T Consensus 487 fse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~ 566 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQI 566 (952)
T ss_pred HHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEE
Confidence 33455678999999998632 11111 00001 01123444 4444443322211 1 1234
Q ss_pred eEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCc-hhHHHHH
Q 002655 313 KIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGL-PLALKTI 364 (896)
Q Consensus 313 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-PLal~~~ 364 (896)
++.+..+...+-.++++......... ...+...-+..+|+|. |.-+.++
T Consensus 567 ~~~L~ap~~~~R~~IL~~~~s~~~~~---~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 567 VIALPAPAVTRRKEILTTIFSKNLSD---ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EEecCCcchhHHHHHHHHHHHhhhhh---hhhHHHHHHHHhcCCccchhHHHH
Confidence 56788888888777776655332211 1122233377777765 4444443
No 227
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.017 Score=64.64 Aligned_cols=187 Identities=14% Similarity=0.153 Sum_probs=107.4
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
+++||-+.....|...+..+. -..-....|+-|+||||+|+-++..... .. | ....++..-..-++|..
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC---~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNC---EN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcC---CC------C-CCCCcchhhhhhHhhhc
Confidence 457999999999988887762 2345567899999999999999887631 10 0 11222233333333432
Q ss_pred HhCCCc---ccccccCHHHHHHHHHHHh-----cCCcEEEEEeccCC--cccccccccCcCCCCCCcEEEEecCChh-hh
Q 002655 237 RIGLSA---ESWMDKSLEEKALDISNIL-----SRKKFVLLLDDIWQ--PIDLTELGIPLQSLNVSSKVVFTTRSLD-VC 305 (896)
Q Consensus 237 ~l~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~gs~IivTtR~~~-v~ 305 (896)
.-.... +.......++. +.|.+.. .++.=+.|+|+|.- ...|..+...+......-..|+.|++.+ +.
T Consensus 85 g~~~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred CCcccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 200000 00011122222 2222222 34566889999964 3556666555543344555565555543 32
Q ss_pred -ccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 306 -GSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 306 -~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
.-.+..+.|.++.++.++-...+...+........ .+....|++..+|..
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 22345678999999999999998888765543322 334556666666644
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.01 Score=64.34 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=81.4
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcC----------------CCCEEEEEEe
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH----------------HFDVVIWGVV 221 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~----------------~f~~~~wv~~ 221 (896)
.++|-+....++..+..........+.++|++|+||||+|.++++......... ..+.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 357777888888888875543445599999999999999999998873111000 1123444444
Q ss_pred CCCCC---HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEE
Q 002655 222 SREPK---LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVV 296 (896)
Q Consensus 222 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Ii 296 (896)
+.... ..+..+++.+...... ..++.-++++|+++... .-..+...+......+++|
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 43333 2333333333332211 03567899999998642 2223333333344567888
Q ss_pred EecCCh-hhhccC-CCCceEEeccCC
Q 002655 297 FTTRSL-DVCGSM-EADEKIEVKYLV 320 (896)
Q Consensus 297 vTtR~~-~v~~~~-~~~~~~~l~~L~ 320 (896)
++|.+. .+...+ .....+.+.+.+
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCch
Confidence 877633 332211 223456666633
No 229
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.63 E-value=0.0097 Score=59.82 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHh-CCCccc---ccccCH---H
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRI-GLSAES---WMDKSL---E 251 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-~~~~~~---~~~~~~---~ 251 (896)
...++.|+|++|+|||++|.+++.... .....++|++... ++...+.+. ++.. ...... ....+. .
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~-----~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~ 83 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA-----RQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQG 83 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHH
Confidence 457999999999999999999887763 2346889999875 555554443 2221 000000 011122 2
Q ss_pred HHHHHHHHHhcC-CcEEEEEeccC
Q 002655 252 EKALDISNILSR-KKFVLLLDDIW 274 (896)
Q Consensus 252 ~~~~~l~~~l~~-k~~LlVlDdv~ 274 (896)
+....+.+.+.. +.-+||+|.+.
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCcH
Confidence 234444444443 45688888874
No 230
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.61 E-value=0.013 Score=60.53 Aligned_cols=95 Identities=23% Similarity=0.245 Sum_probs=56.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhh-hhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc-------ccccCH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIE-QRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES-------WMDKSL 250 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 250 (896)
...+.=|+|.+|+|||.|+.+++-....+ ...+.=..++|++....++...+. +|++..+...++ ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 44688899999999999998876543211 111223579999999888887765 466665543221 011233
Q ss_pred HHHHHH---HHHHh-cCCcEEEEEeccC
Q 002655 251 EEKALD---ISNIL-SRKKFVLLLDDIW 274 (896)
Q Consensus 251 ~~~~~~---l~~~l-~~k~~LlVlDdv~ 274 (896)
+++... +...+ .++--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 333333 33333 3345688888873
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.014 Score=59.49 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=52.4
Q ss_pred HHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc
Q 002655 165 MLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES 244 (896)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 244 (896)
.+..+.++...-..+...+.++|.+|+|||+||.++++... . .-..+++++ ..++...+-.....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~----~-~g~~v~~it------~~~l~~~l~~~~~~---- 148 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL----L-RGKSVLIIT------VADIMSAMKDTFSN---- 148 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH----h-cCCeEEEEE------HHHHHHHHHHHHhh----
Confidence 34444444443222345789999999999999999999874 2 223556664 34455444333210
Q ss_pred ccccCHHHHHHHHHHHhcCCcEEEEEeccCCc
Q 002655 245 WMDKSLEEKALDISNILSRKKFVLLLDDIWQP 276 (896)
Q Consensus 245 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 276 (896)
...+.+ .+.+.+. +.=+||+||+...
T Consensus 149 -~~~~~~----~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 149 -SETSEE----QLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred -ccccHH----HHHHHhc-cCCEEEEeCCCCC
Confidence 111222 2333344 4558889999653
No 232
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0038 Score=59.32 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=55.6
Q ss_pred CCcEEEcccCccccccchhhccCCCccEEecccccccccCCcccc-CCCcCcEEeccCCCccccch--hhhcCCCCcEEe
Q 002655 537 HLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLS-SLISLEHLDLSFTVIRELPE--EMKALVNLRYLN 613 (896)
Q Consensus 537 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~ 613 (896)
+...++|++|.+..++. |..++.|..|.|++| .|..+-..+. .+++|..|.|.+|+|.++-. .+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34556666666655544 566666777777666 4444433333 34456667776666665432 244556666666
Q ss_pred ccccccccc---cccccCCCCccceeeccC
Q 002655 614 LEYVYLNRL---PLQLLCNFTKLQALRMLG 640 (896)
Q Consensus 614 l~~~~l~~l---p~~~i~~l~~L~~L~l~~ 640 (896)
+-+|.+..- -..++..+++|+.|+..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 655533322 223455566666665554
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.58 E-value=0.0017 Score=60.39 Aligned_cols=75 Identities=25% Similarity=0.279 Sum_probs=45.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhc
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILS 262 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 262 (896)
|.++|++|+|||+||+.+++... ....-+.++...+..++....--. .....+.........
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~--------~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~-------- 63 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG--------RPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAM-------- 63 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT--------CEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTH--------
T ss_pred EEEECCCCCCHHHHHHHHHHHhh--------cceEEEEeccccccccceeeeeec--ccccccccccccccc--------
Confidence 67999999999999999998762 234456777777777665433211 001111111110000
Q ss_pred CCcEEEEEeccCC
Q 002655 263 RKKFVLLLDDIWQ 275 (896)
Q Consensus 263 ~k~~LlVlDdv~~ 275 (896)
.+..++|||++..
T Consensus 64 ~~~~il~lDEin~ 76 (139)
T PF07728_consen 64 RKGGILVLDEINR 76 (139)
T ss_dssp HEEEEEEESSCGG
T ss_pred cceeEEEECCccc
Confidence 1788999999874
No 234
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.57 E-value=0.033 Score=67.29 Aligned_cols=171 Identities=19% Similarity=0.163 Sum_probs=93.7
Q ss_pred cccchhHHHHHHHHHhhc-----------cCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 158 TVVGQESMLDQVWRCITD-----------QEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
++.|.+..++++.+.+.- +-...+-+.++|++|.|||++|+++++... ..| +.+..+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-----~~f---i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-----ANF---IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCE---EEEehH----
Confidence 467888887777665531 111345688999999999999999998762 232 222211
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHH-HHhcCCcEEEEEeccCCcc---------c-----ccccccCcCC--C
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDIS-NILSRKKFVLLLDDIWQPI---------D-----LTELGIPLQS--L 289 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~---------~-----~~~~~~~l~~--~ 289 (896)
++ .... .+.+ +.....+. ..-...+.+|++|+++... . ...+...+.. .
T Consensus 522 --~l----~~~~-------vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 522 --EI----LSKW-------VGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred --HH----hhcc-------cCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 11 1110 1122 22223333 3335678999999986421 0 0111111111 1
Q ss_pred CCCcEEEEecCChhhhccC-----CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCch
Q 002655 290 NVSSKVVFTTRSLDVCGSM-----EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 290 ~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
..+--||.||...+..... ..+..+.++..+.++-.++|.............+ ...+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 2344566677655443211 2356788999999999999876654332222222 456667777654
No 235
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.57 E-value=0.021 Score=57.78 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=32.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
...++.|.|.+|+||||+|.+++.... ..-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~-----~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA-----GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEECCCCCH
Confidence 457999999999999999999988763 2234678887655443
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.51 E-value=0.016 Score=59.42 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhh-hhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc-------ccccCH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIE-QRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES-------WMDKSL 250 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 250 (896)
...++.|+|.+|+|||++|.+++...... ...+....++|++....++...+ .++++..+..... ....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 45799999999999999999997553100 00111368999998877665444 3344444332110 011122
Q ss_pred HH---HHHHHHHHhc-C-CcEEEEEeccCC
Q 002655 251 EE---KALDISNILS-R-KKFVLLLDDIWQ 275 (896)
Q Consensus 251 ~~---~~~~l~~~l~-~-k~~LlVlDdv~~ 275 (896)
++ ....+.+.+. . +.-+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 22 2333444442 3 567888888743
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.074 Score=56.85 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEe
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVV 221 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~ 221 (896)
..+.++|.+|+|||+||.++++... ... ..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~----~~g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL----DRG-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH----HCC-CeEEEEEH
Confidence 7799999999999999999999873 232 35666654
No 238
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.48 E-value=0.014 Score=61.63 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=57.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc---ccccCHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES---WMDKSLEEKAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~ 255 (896)
.-+++-|+|++|+||||||.+++.... ..-..++|+.....++.. .+++++...+. ....+.++...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~-----~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ-----KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 457999999999999999999877763 223567788776655543 45666654322 12334555555
Q ss_pred HHHHHhc-CCcEEEEEeccCC
Q 002655 256 DISNILS-RKKFVLLLDDIWQ 275 (896)
Q Consensus 256 ~l~~~l~-~k~~LlVlDdv~~ 275 (896)
.+...++ +..-+||+|.|..
T Consensus 124 ~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHHHhhccCCcEEEEcchhh
Confidence 5555553 4677999999853
No 239
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.0067 Score=68.40 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=55.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
..+++.++|++|+||||||..++++.. ..++=+++|+.-+...+-..|...+....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--------YsVvEINASDeRt~~~v~~kI~~avq~~s---------------- 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--------YSVVEINASDERTAPMVKEKIENAVQNHS---------------- 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--------ceEEEecccccccHHHHHHHHHHHHhhcc----------------
Confidence 457999999999999999999988752 25777888888777777777766654321
Q ss_pred HHh--cCCcEEEEEeccCCc
Q 002655 259 NIL--SRKKFVLLLDDIWQP 276 (896)
Q Consensus 259 ~~l--~~k~~LlVlDdv~~~ 276 (896)
.+ .+++.-||+|.++..
T Consensus 381 -~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 -VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred -ccccCCCcceEEEecccCC
Confidence 22 268889999999764
No 240
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.48 E-value=0.011 Score=71.25 Aligned_cols=49 Identities=31% Similarity=0.473 Sum_probs=38.6
Q ss_pred cccccchhHHHHHHHHHhhcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 156 ERTVVGQESMLDQVWRCITDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...++|-+..++.+...+... .....++.++|+.|+|||+||+.++...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 345789999999988887632 1123568899999999999999998865
No 241
>PRK06921 hypothetical protein; Provisional
Probab=96.47 E-value=0.0075 Score=62.60 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=29.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEe
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVV 221 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~ 221 (896)
....+.++|.+|+|||+||.++++... ...-..++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~----~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM----RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh----hhcCceEEEEEH
Confidence 357789999999999999999999873 221345666653
No 242
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.46 E-value=0.0015 Score=63.37 Aligned_cols=73 Identities=27% Similarity=0.372 Sum_probs=43.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
..-+.++|.+|+|||.||.++.+... ...+ .+.|+. ..+++..+-..- .....++ +.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~----~~g~-~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~ 104 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI----RKGY-SVLFIT------ASDLLDELKQSR-------SDGSYEE----LLK 104 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH----HTT---EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc----cCCc-ceeEee------cCceeccccccc-------cccchhh----hcC
Confidence 45799999999999999999999874 3333 456665 344555543211 1112222 223
Q ss_pred HhcCCcEEEEEeccCC
Q 002655 260 ILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~ 275 (896)
.+. +-=||||||+-.
T Consensus 105 ~l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 105 RLK-RVDLLILDDLGY 119 (178)
T ss_dssp HHH-TSSCEEEETCTS
T ss_pred ccc-cccEecccccce
Confidence 333 345778999864
No 243
>PRK04132 replication factor C small subunit; Provisional
Probab=96.42 E-value=0.052 Score=64.76 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=91.2
Q ss_pred CCCCcHHHHHHHHHhhhhhhhhcCCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcE
Q 002655 188 TGGVGKTTLLKQVNNKFCIEQRQHHF-DVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKF 266 (896)
Q Consensus 188 ~gGiGKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 266 (896)
|.++||||+|.++++..- ...+ ..++-+++++......+...+-+...... . -..+.-
T Consensus 574 Ph~lGKTT~A~ala~~l~----g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~---~--------------~~~~~K 632 (846)
T PRK04132 574 PTVLHNTTAALALARELF----GENWRHNFLELNASDERGINVIREKVKEFARTKP---I--------------GGASFK 632 (846)
T ss_pred CCcccHHHHHHHHHHhhh----cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC---c--------------CCCCCE
Confidence 779999999999999862 1222 24667777765555444333322111100 0 012457
Q ss_pred EEEEeccCCcc--cccccccCcCCCCCCcEEEEecCCh-hhhcc-CCCCceEEeccCChHHHHHHHHHhhCCcccCCCcc
Q 002655 267 VLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSL-DVCGS-MEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSD 342 (896)
Q Consensus 267 LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 342 (896)
++|+|+++... ....+...+......+++|++|.+. .+... .+....+.+.+++.++..+.+...+.......+
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~-- 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT-- 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 99999998753 3444444443333456676666543 33222 233568999999999998888776643221222
Q ss_pred HHHHHHHHHHHcCCchhHHH
Q 002655 343 ILELAQTLARECCGLPLALK 362 (896)
Q Consensus 343 ~~~~~~~i~~~c~g~PLal~ 362 (896)
.+....|++.++|.+-.+.
T Consensus 711 -~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 -EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred -HHHHHHHHHHcCCCHHHHH
Confidence 4468899999999885443
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.14 Score=57.29 Aligned_cols=89 Identities=22% Similarity=0.288 Sum_probs=49.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
...+++|+|++|+||||++..++.... .......+..+..... ....+.+....+.++.... ...+..+....+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la---~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL 423 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA---AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL 423 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH---HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH
Confidence 348999999999999999999887763 1222234555554321 1223334444444554321 112333333333
Q ss_pred HHHhcCCcEEEEEeccC
Q 002655 258 SNILSRKKFVLLLDDIW 274 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv~ 274 (896)
. .+. ..=+|++|..-
T Consensus 424 ~-~l~-~~DLVLIDTaG 438 (559)
T PRK12727 424 E-RLR-DYKLVLIDTAG 438 (559)
T ss_pred H-Hhc-cCCEEEecCCC
Confidence 3 333 34578888874
No 245
>PRK09354 recA recombinase A; Provisional
Probab=96.39 E-value=0.019 Score=61.19 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc---ccccCHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES---WMDKSLEEKAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~ 255 (896)
.-+++-|+|++|+||||||.+++.... ..-..++|+.....++. ..++++|...+. ....+.++...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-----~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~ 128 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-----KAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALE 128 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHH
Confidence 457999999999999999999877653 23357889988776665 345666654322 12334555555
Q ss_pred HHHHHhc-CCcEEEEEeccCC
Q 002655 256 DISNILS-RKKFVLLLDDIWQ 275 (896)
Q Consensus 256 ~l~~~l~-~k~~LlVlDdv~~ 275 (896)
.+...++ +..-+||+|.|-.
T Consensus 129 i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 129 IADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHHHhhcCCCCEEEEeChhh
Confidence 5555553 4567999999853
No 246
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.38 E-value=0.018 Score=60.93 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=57.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc---ccccCHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES---WMDKSLEEKAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~ 255 (896)
.-+++-|+|++|+||||||.+++.... ..-..++|++....+++. .+++++...+. ....+.++...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~-----~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ-----KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 457899999999999999999877653 233567898877666543 45555553322 12334555555
Q ss_pred HHHHHhc-CCcEEEEEeccCC
Q 002655 256 DISNILS-RKKFVLLLDDIWQ 275 (896)
Q Consensus 256 ~l~~~l~-~k~~LlVlDdv~~ 275 (896)
.+...++ +..-+||+|.|-.
T Consensus 124 i~~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHHHhccCCCEEEEcchHh
Confidence 5555543 4567999999753
No 247
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0021 Score=63.83 Aligned_cols=104 Identities=31% Similarity=0.372 Sum_probs=76.9
Q ss_pred cccceeeeccccCccccCCCCCCCCCcEEEcccC--ccccccchhhccCCCccEEecccccccccCCc---cccCCCcCc
Q 002655 513 WEGFKRISLMENNITSLSAIPNCPHLRTLLLYRN--RISMITDGFFQFMPSLKVLNLGFNIFLNKLPS---GLSSLISLE 587 (896)
Q Consensus 513 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~---~~~~l~~L~ 587 (896)
+..+..+++.+..+..+..++.+++|+.|.++.| ++..-..-....+++|++|+|++| .+.. ++ .+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchh
Confidence 3467778888888888888999999999999999 433222223566799999999999 5553 22 356678899
Q ss_pred EEeccCCCccccch----hhhcCCCCcEEeccccc
Q 002655 588 HLDLSFTVIRELPE----EMKALVNLRYLNLEYVY 618 (896)
Q Consensus 588 ~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~~ 618 (896)
.|++..|..+.+-. .+.-+++|.+|+-....
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 99999997765532 34557888888876653
No 248
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.35 E-value=0.0067 Score=57.12 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=72.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE---------------------eCCC-------------
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV---------------------VSRE------------- 224 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~---------------------~s~~------------- 224 (896)
....+.++|+.|.||||+.+.+|...+ .-.+.+|+. |-+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~------pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNV 100 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER------PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV 100 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc------CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhh
Confidence 447899999999999999999998863 112333331 0011
Q ss_pred --------CCHHHHHHHH---HHHhCCCccc----ccccCHHHHHHHHHHHhcCCcEEEEEecc----CCcccccccccC
Q 002655 225 --------PKLDKIQDAI---GKRIGLSAES----WMDKSLEEKALDISNILSRKKFVLLLDDI----WQPIDLTELGIP 285 (896)
Q Consensus 225 --------~~~~~~~~~i---~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~~~ 285 (896)
....++.+.. ++..|+.... ..-..-++....|.+.+-+++-+|+-|.- +....|+-+...
T Consensus 101 A~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lf 180 (223)
T COG2884 101 ALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180 (223)
T ss_pred hhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHH
Confidence 1122232222 2333332211 01223344455677888899999999964 333334432111
Q ss_pred cCCCCCCcEEEEecCChhhhccCC
Q 002655 286 LQSLNVSSKVVFTTRSLDVCGSME 309 (896)
Q Consensus 286 l~~~~~gs~IivTtR~~~v~~~~~ 309 (896)
-.-+..|..|+++|-+.++...+.
T Consensus 181 eeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 181 EEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHhhcCcEEEEEeccHHHHHhcc
Confidence 122346899999999999877663
No 249
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.34 E-value=0.0079 Score=62.46 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=73.9
Q ss_pred cchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEE----EeCCCC---------C
Q 002655 160 VGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWG----VVSREP---------K 226 (896)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv----~~s~~~---------~ 226 (896)
-+|..+..--+++|.++ .+..|.+.|.+|.|||.||.+..=... ..+..|..++-. .+++.. .
T Consensus 227 ~prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv--~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 227 RPRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQV--LERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred CcccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHH--HHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 45666666677888888 899999999999999999987644332 234555544422 122211 1
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHH-H---------HHhcCC---cEEEEEeccCCc--ccccccccCcCCCCC
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDI-S---------NILSRK---KFVLLLDDIWQP--IDLTELGIPLQSLNV 291 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~---------~~l~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~ 291 (896)
+.-....|..-+..-... .... .+....+ . .+.+++ +.++|+|.+.+. .+...+ +...+.
T Consensus 303 m~PWmq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR~G~ 377 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTRAGE 377 (436)
T ss_pred ccchHHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHhccC
Confidence 112233333322110000 0011 1111111 1 123343 468999999763 333333 455688
Q ss_pred CcEEEEecCChh
Q 002655 292 SSKVVFTTRSLD 303 (896)
Q Consensus 292 gs~IivTtR~~~ 303 (896)
||||+.|---.+
T Consensus 378 GsKIVl~gd~aQ 389 (436)
T COG1875 378 GSKIVLTGDPAQ 389 (436)
T ss_pred CCEEEEcCCHHH
Confidence 999999865433
No 250
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.33 E-value=0.095 Score=56.79 Aligned_cols=43 Identities=23% Similarity=0.462 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhccC-CCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 163 ESMLDQVWRCITDQE-KNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 163 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
+...+.+.+.+...+ ....+|+|.|.=|+||||+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444566777776643 5778999999999999999999988874
No 251
>PRK06696 uridine kinase; Validated
Probab=96.31 E-value=0.0065 Score=61.66 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHhhc-cCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 161 GQESMLDQVWRCITD-QEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 161 Gr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.|++.+++|.+.+.. ...+..+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 466777788777754 23367899999999999999999999887
No 252
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.28 E-value=0.013 Score=57.23 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=66.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE---eCCCCCHHHHH------HHHHHHhCCCccc---cc
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV---VSREPKLDKIQ------DAIGKRIGLSAES---WM 246 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~~~---~~ 246 (896)
...+++|+|..|.|||||++.++.... ...+.+++. +.. .+..... .++++.+++.... ..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~------~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~ 96 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK------PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFN 96 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC------CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcc
Confidence 447999999999999999999987652 233444432 221 1222211 1245555553210 11
Q ss_pred c-cCHHHHHHHHHHHhcCCcEEEEEeccCCccc---ccccccCcCCC-CC-CcEEEEecCChhhh
Q 002655 247 D-KSLEEKALDISNILSRKKFVLLLDDIWQPID---LTELGIPLQSL-NV-SSKVVFTTRSLDVC 305 (896)
Q Consensus 247 ~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~-~~-gs~IivTtR~~~v~ 305 (896)
. ..-+...-.+.+.+...+-++++|+.-..-+ .+.+...+... .. |..||++|.+.+..
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1 1223334456677778889999999754322 22222222111 12 56788888876654
No 253
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.28 E-value=0.013 Score=57.09 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEE
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWG 219 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv 219 (896)
...+|.+.|++|+||||+|+.++.... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~-----~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK-----LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCcEEEE
Confidence 456999999999999999999998873 345555555
No 254
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.27 E-value=0.026 Score=52.96 Aligned_cols=116 Identities=22% Similarity=0.198 Sum_probs=62.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC---CCCHHHHHHHHHHHh-----CCCcccccccCHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR---EPKLDKIQDAIGKRI-----GLSAESWMDKSLEE 252 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~ 252 (896)
+.|-|++..|.||||+|...+-+.. ...+ .+.++..-. ......++..+- .+ +.. ..+...+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~----~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~-~~~~~~~~~~ 75 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL----GHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRG-FFWTTENDEE 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH----HCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCC-CccCCCChHH
Confidence 5788999999999999999887763 2333 455544332 233333443331 11 110 0001111111
Q ss_pred -------HHHHHHHHhc-CCcEEEEEeccCCc-----ccccccccCcCCCCCCcEEEEecCChh
Q 002655 253 -------KALDISNILS-RKKFVLLLDDIWQP-----IDLTELGIPLQSLNVSSKVVFTTRSLD 303 (896)
Q Consensus 253 -------~~~~l~~~l~-~k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~~ 303 (896)
.....++.+. +.-=|||||++-.. .+.+++...+.....+.-||+|.|+..
T Consensus 76 ~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 76 DIAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122333343 34569999998542 233344444444556778999999854
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.025 Score=58.20 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=46.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
...-+.++|.+|+|||.||.++.+... ..--.+.+++ ..++...+...... .. ....+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-----~~g~sv~f~~------~~el~~~Lk~~~~~-------~~---~~~~l~ 162 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-----KAGISVLFIT------APDLLSKLKAAFDE-------GR---LEEKLL 162 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-----HcCCeEEEEE------HHHHHHHHHHHHhc-------Cc---hHHHHH
Confidence 457789999999999999999999983 3233556664 34555555544421 11 111222
Q ss_pred HHhcCCcEEEEEeccCC
Q 002655 259 NILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~ 275 (896)
+.+. +-=||||||+-.
T Consensus 163 ~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 163 RELK-KVDLLIIDDIGY 178 (254)
T ss_pred HHhh-cCCEEEEecccC
Confidence 2222 234889999854
No 256
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.23 E-value=0.042 Score=58.39 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=60.5
Q ss_pred HhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhh-hcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc-----
Q 002655 172 CITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQ-RQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW----- 245 (896)
Q Consensus 172 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----- 245 (896)
.|..+-...+++-|+|++|+|||+++.+++-....+. ....=..++|++....++++.+.+ +++.++...+..
T Consensus 88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~ 166 (313)
T TIGR02238 88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNIL 166 (313)
T ss_pred HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEE
Confidence 3443333457888999999999999988764431110 011224789999988888887654 567776543211
Q ss_pred --cccCHHHHH---HHHHHHh-cCCcEEEEEeccC
Q 002655 246 --MDKSLEEKA---LDISNIL-SRKKFVLLLDDIW 274 (896)
Q Consensus 246 --~~~~~~~~~---~~l~~~l-~~k~~LlVlDdv~ 274 (896)
...+.++.. ..+...+ .++--|||+|.+.
T Consensus 167 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 167 YARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 111233333 3333333 2355578888874
No 257
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.22 E-value=0.021 Score=55.44 Aligned_cols=89 Identities=19% Similarity=0.147 Sum_probs=46.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCccc-ccccCHHHHH-HHHH
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAES-WMDKSLEEKA-LDIS 258 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l~ 258 (896)
++.++|++|+||||+++.++.... ... ..++.+...... ...+.+...++..+.+-.. ....+..+.. ..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~----~~g-~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK----KKG-KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIE 76 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----HCC-CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHH
Confidence 678999999999999999988773 222 234444433221 2233344445555432111 1112333333 2333
Q ss_pred HHhcCCcEEEEEeccCC
Q 002655 259 NILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~ 275 (896)
....+..-++|+|..-.
T Consensus 77 ~~~~~~~d~viiDt~g~ 93 (173)
T cd03115 77 HAREENFDVVIVDTAGR 93 (173)
T ss_pred HHHhCCCCEEEEECccc
Confidence 33344444666777543
No 258
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.22 E-value=0.032 Score=57.46 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=95.6
Q ss_pred ccccchhHHHHHHHHHhhcc--CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCH-HHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQ--EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKL-DKIQDA 233 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~ 233 (896)
..++|-.++..++-.++... -++...+.|+|+.|.|||+|...+..+.. +.+. ..+-|........ .-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E---~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGE---NFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCC---eEEEEEECccchhhHHHHHH
Confidence 45799999999998888753 22556788999999999999988877731 2333 3344454444333 234566
Q ss_pred HHHHhCCCccc--ccccCHHHHHHHHHHHhc------CCcEEEEEeccCCccc------ccccc-cCcCCCCCCcEEEEe
Q 002655 234 IGKRIGLSAES--WMDKSLEEKALDISNILS------RKKFVLLLDDIWQPID------LTELG-IPLQSLNVSSKVVFT 298 (896)
Q Consensus 234 i~~~l~~~~~~--~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~------~~~~~-~~l~~~~~gs~IivT 298 (896)
|.+++...-.. ....+..+....+-..|+ +.++++|+|.++-... +..+. ..-....+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 66655332111 122333344444545553 2468888888764211 11110 011123455677889
Q ss_pred cCChh-------hhccCCCCceEEeccCChHHHHHHHHHhh
Q 002655 299 TRSLD-------VCGSMEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 299 tR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
||-.- |-..+.-..++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 98532 22222222344556667777777776655
No 259
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.21 E-value=0.00071 Score=78.09 Aligned_cols=239 Identities=15% Similarity=0.138 Sum_probs=116.4
Q ss_pred cCCCCcEEecccc-cccccc-ccccCCCCccceeeccCc-cCCCCCccccccccCcchhhhhhccCcCCceeEEEecchh
Q 002655 605 ALVNLRYLNLEYV-YLNRLP-LQLLCNFTKLQALRMLGC-SNYSGEEEDRVFFKDAEPFMKELLCLENLDLLSFTFDSWH 681 (896)
Q Consensus 605 ~L~~L~~L~l~~~-~l~~lp-~~~i~~l~~L~~L~l~~c-~~~~~~~e~~~~~~~~~~~l~~L~~L~~L~~l~i~~~~~~ 681 (896)
.+++|+.|.+.+| .+.... ......+++|+.|.+.+| ...... ..........+++|+.+++......
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS---------PLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc---------hhHhhhhhhhcCCcCccchhhhhcc
Confidence 4788999999988 665522 122577899999999884 222211 0011122333455555555433311
Q ss_pred hhHhhhhccccccceeEEEecccCCCCcccccc-hhhccccceEEeccCCcee-eeeccccccccccccccCcccEEeec
Q 002655 682 AFETFLTFQKLLSCTESLELTKLYTPMSLNVLP-LAYMKHLKNFLIQNCAFEE-LKIENAVEIQNLVQRGFRSLHTVFIS 759 (896)
Q Consensus 682 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~ 759 (896)
.-..+......+++|+.|.+..|...++..... ...+++|++|++++|.... ..... . ...+++|+.|.+.
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~------~-~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA------L-LKNCPNLRELKLL 329 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH------H-HHhCcchhhhhhh
Confidence 111111112224567777766665433333322 2346667777777776542 00100 1 1235555555544
Q ss_pred cCCC---CCCCcc--cccCC--CCcEEeEecCccccccccCCcCccccccccccccCcccc-eeeccCCccc-ccccCCC
Q 002655 760 DCSR---LKELTW--LVFAP--NLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELK-FLCLKDLENL-ESIYFDP 830 (896)
Q Consensus 760 ~c~~---l~~l~~--l~~l~--~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~-~L~l~~~~~L-~~l~~~~ 830 (896)
.+.+ ++.+.. +.... .+..+.+.+|+.++.+.-. ........ .+.+.+|+.+ ..+..-.
T Consensus 330 ~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~------------~~~~~~~~~~~~l~gc~~l~~~l~~~~ 397 (482)
T KOG1947|consen 330 SLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLS------------YCGISDLGLELSLRGCPNLTESLELRL 397 (482)
T ss_pred hcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhh------------hhhccCcchHHHhcCCcccchHHHHHh
Confidence 4433 332211 11111 4555666666665554210 00112222 4566677766 3333333
Q ss_pred CCCCCccEEEecCCCCCCCCCCCCC---CCCCcceEEEcchhhh
Q 002655 831 LPFPQLKEIEVTGCPKLKKLPLDST---RAMGHKIVVKGNIEWW 871 (896)
Q Consensus 831 ~~~~~L~~L~i~~c~~L~~lp~~~~---~~~l~~l~I~~~~~~~ 871 (896)
..+++|+.|.+..|...+.--.... ...+..+.+.+|...+
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 4445588888888887775433222 2334555555554333
No 260
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.20 E-value=0.037 Score=61.40 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCcccc-cccCHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSAESW-MDKSLEEKALD 256 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~ 256 (896)
...+|.++|.+|+||||.|..++.... +..+ .+.-|++... ....+.+..++++++.+.... ...+.......
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~----~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK----KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH----HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 467999999999999999999998774 2222 4444544322 123455667777777653221 11233333333
Q ss_pred HHHHhcCCcEEEEEeccC
Q 002655 257 ISNILSRKKFVLLLDDIW 274 (896)
Q Consensus 257 l~~~l~~k~~LlVlDdv~ 274 (896)
..+.+.+. -+||+|..-
T Consensus 169 al~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 169 GLEKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHHHhhcC-CEEEEECCC
Confidence 33333343 568888874
No 261
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.19 E-value=0.014 Score=59.93 Aligned_cols=92 Identities=22% Similarity=0.426 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCC-CEEEEEEeCCCCC-HHHHHHHHHHHhCCCcc----cccccCHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHF-DVVIWGVVSREPK-LDKIQDAIGKRIGLSAE----SWMDKSLEE 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f-~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~ 252 (896)
.-.-++|.|.+|+||||||+.+++... .+| +.++++-+++... ..++.+.+.+.-.+... ...+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~-----~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 142 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA-----KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGA 142 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH-----hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHH
Confidence 346789999999999999999999874 234 4566666665543 45666666543222110 011222222
Q ss_pred H------HHHHHHHh--c-CCcEEEEEeccCC
Q 002655 253 K------ALDISNIL--S-RKKFVLLLDDIWQ 275 (896)
Q Consensus 253 ~------~~~l~~~l--~-~k~~LlVlDdv~~ 275 (896)
. ...+.+++ + ++.+|+++||+-.
T Consensus 143 r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 143 RARVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1 23345555 3 8899999999854
No 262
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.19 E-value=0.026 Score=61.42 Aligned_cols=85 Identities=26% Similarity=0.376 Sum_probs=51.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc---cccCHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW---MDKSLEEKAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~ 255 (896)
...++.|.|.+|+|||||+.+++.... ..-..++|+.... +..++ ..-++.++...+.. ...+.++...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a-----~~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~ 152 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA-----KRGGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILA 152 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH-----hcCCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHH
Confidence 457999999999999999999988764 2224677876543 33333 22345566543221 1122333333
Q ss_pred HHHHHhcCCcEEEEEeccC
Q 002655 256 DISNILSRKKFVLLLDDIW 274 (896)
Q Consensus 256 ~l~~~l~~k~~LlVlDdv~ 274 (896)
.+. ..+.-+||+|.+.
T Consensus 153 ~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 153 SIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred HHH---hcCCcEEEEcchH
Confidence 322 3466788888874
No 263
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.034 Score=64.94 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=89.0
Q ss_pred ccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcC--CCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 159 VVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH--HFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~--~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
++||++++.++++.|.....+-+ .++|.+|+|||++|.-++.+....++-. ....++-.. +..
T Consensus 172 vIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~g~ 236 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------LGS 236 (786)
T ss_pred CcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------HHH
Confidence 79999999999999987633333 3689999999999999888873111100 011111111 111
Q ss_pred HhCCCcccccccCHHHHHHHHHHHhc-CCcEEEEEeccCCc----------ccccccccCcCCCCCCcEEEEecCChhhh
Q 002655 237 RIGLSAESWMDKSLEEKALDISNILS-RKKFVLLLDDIWQP----------IDLTELGIPLQSLNVSSKVVFTTRSLDVC 305 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~gs~IivTtR~~~v~ 305 (896)
-... .. ...+.+++...+.+.++ .++..|++|.+... -+...+..|-...+.--.|-.||=+ +--
T Consensus 237 LvAG--ak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~-EYR 312 (786)
T COG0542 237 LVAG--AK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD-EYR 312 (786)
T ss_pred Hhcc--cc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH-HHH
Confidence 1111 11 23456666666666554 45899999998652 1122233332222222234455533 221
Q ss_pred cc-------CCCCceEEeccCChHHHHHHHHHhh
Q 002655 306 GS-------MEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 306 ~~-------~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
.. ....+.+.+...+.+++...++...
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11 1234688899999999999887543
No 264
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.16 E-value=0.0062 Score=68.02 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=40.9
Q ss_pred ccccchhHHHHHHHHHhhc----cCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITD----QEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.+++|.++.++++++.|.. -+...+++.++|++|+||||||+.+++-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 3579999999999998832 23356899999999999999999999876
No 265
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0003 Score=69.63 Aligned_cols=79 Identities=29% Similarity=0.334 Sum_probs=45.7
Q ss_pred CCCCcEEEcccCccccccchhhccCCCccEEecccccccccCCccccCCCcCcEEeccCCCccccch--hhhcCCCCcEE
Q 002655 535 CPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEHLDLSFTVIRELPE--EMKALVNLRYL 612 (896)
Q Consensus 535 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L 612 (896)
+.+.+.|++.||.++.+. ++..|+.|++|.||-| .|+.+- .+..+++|+.|.|+.|.|..+-+ -+.+|++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 344555666666665553 2556666777777666 555552 45566666666666666655432 24555566666
Q ss_pred ecccc
Q 002655 613 NLEYV 617 (896)
Q Consensus 613 ~l~~~ 617 (896)
-|..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 55554
No 266
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.049 Score=58.25 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=38.2
Q ss_pred CcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCChh-hhcc-CCCCceEEeccCChHHHHHHHHHh
Q 002655 264 KKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRSLD-VCGS-MEADEKIEVKYLVHDEAWRLFQEK 331 (896)
Q Consensus 264 k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 331 (896)
++-++|+|++...+ .-..+...+.....+..+|++|.+.+ +... ......+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 44455667776532 22222222222223466777777654 3322 123467899999999999888654
No 267
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.013 Score=53.73 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCc
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSA 242 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 242 (896)
+|.|-|++|.||||+|+.+++... -.| | +...++++|++..|++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-----l~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-----LKL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-----Cce-----e------eccHHHHHHHHHcCCCH
Confidence 689999999999999999999874 111 1 34568899999988764
No 268
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.09 E-value=0.015 Score=54.25 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=58.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
.-.+++|+|..|.|||||++.+..... ...+.+|+.-. ..++.-. +-..-+...-.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~la 82 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE------PDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALA 82 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC------CCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHH
Confidence 447899999999999999999987652 22344444210 0000000 0111223334456
Q ss_pred HHhcCCcEEEEEeccCCccc---ccccccCcCCCCCCcEEEEecCChhhhc
Q 002655 259 NILSRKKFVLLLDDIWQPID---LTELGIPLQSLNVSSKVVFTTRSLDVCG 306 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~IivTtR~~~v~~ 306 (896)
+.+..++-++++|+.-..-| ...+...+... +..||++|.+.+...
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 66777888999999754322 22222222211 246888887766543
No 269
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.08 E-value=0.045 Score=56.08 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=38.8
Q ss_pred HHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 171 RCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 171 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
+.|..+=....++.|.|.+|+|||++|.++..... ..-..++|++... ++.++.+.+
T Consensus 12 ~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~-----~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 12 EILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL-----QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCcEEEEEeeC--CHHHHHHHH
Confidence 33444333568999999999999999998766542 2345688887654 455665553
No 270
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.07 E-value=0.036 Score=58.23 Aligned_cols=88 Identities=24% Similarity=0.327 Sum_probs=50.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
..++++|+|++|+||||++..++.... ....-..+..+...... ...+.+....+.++.+.. ...+..+....+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~---~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l 267 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV---LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKAL 267 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHH
Confidence 357999999999999999999988763 12111345556544321 223344455555565432 123334444333
Q ss_pred HHHhcCCcEEEEEecc
Q 002655 258 SNILSRKKFVLLLDDI 273 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv 273 (896)
.. +.+ .=+|++|..
T Consensus 268 ~~-~~~-~d~vliDt~ 281 (282)
T TIGR03499 268 DR-LRD-KDLILIDTA 281 (282)
T ss_pred HH-ccC-CCEEEEeCC
Confidence 33 333 457777753
No 271
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.07 E-value=0.068 Score=63.12 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=88.2
Q ss_pred cccchhHHHHHHHHHh---hcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCH
Q 002655 158 TVVGQESMLDQVWRCI---TDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKL 227 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~ 227 (896)
++.|.+...+++.+.+ ... ..-.+-|.++|++|.|||++|+.+++... ..| +.+..+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-----~~f---~~is~~~---- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPF---FTISGSD---- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCE---EEEehHH----
Confidence 4567766665554433 221 01134589999999999999999988752 232 2222221
Q ss_pred HHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc------------cc----cccccCcCC--C
Q 002655 228 DKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI------------DL----TELGIPLQS--L 289 (896)
Q Consensus 228 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~~----~~~~~~l~~--~ 289 (896)
+.. + . ...........+...-...+.+|++|+++... .. ..+...+.. .
T Consensus 221 --~~~-~---~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 --FVE-M---F-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred --hHH-h---h-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 111 0 0 01111222222333334578999999986531 01 111111111 1
Q ss_pred CCCcEEEEecCChhhhccC-----CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCC
Q 002655 290 NVSSKVVFTTRSLDVCGSM-----EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCG 356 (896)
Q Consensus 290 ~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g 356 (896)
..+.-+|.||...+..... ..++.+.++..+.++-.+++.............+ ...+++.+.|
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 2344556677765543211 1346788888888888888877765433222222 2345556555
No 272
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.07 E-value=0.026 Score=56.98 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=73.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC-----CCCHHHHHHHHHHHhCCCccc-----cccc
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR-----EPKLDKIQDAIGKRIGLSAES-----WMDK 248 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~ 248 (896)
...+++|+|..|.||||+++.+..-.. .. .+.+++.-.+ .....+-..++++.+|+..+. .+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~-----pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelS 111 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE-----PT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELS 111 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC-----CC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccC
Confidence 457999999999999999999987652 22 3334433211 122334466677777754321 1112
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEeccCCcccc------cccccCcCCCCCCcEEEEecCChhhhccCC
Q 002655 249 SLEEKALDISNILSRKKFVLLLDDIWQPIDL------TELGIPLQSLNVSSKVVFTTRSLDVCGSME 309 (896)
Q Consensus 249 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~~~~~l~~~~~gs~IivTtR~~~v~~~~~ 309 (896)
.-+...-.+.+.|.-++-++|.|..-+.-+. ..+...+. ...|-..+..|-+-.++..+.
T Consensus 112 GGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 112 GGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred chhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 2223334577888999999999996553221 11211121 223566788888877776553
No 273
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.062 Score=61.35 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=61.2
Q ss_pred ccccchhHHHHHHHHHhhcc-------CC---CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 157 RTVVGQESMLDQVWRCITDQ-------EK---NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
.++=|-++.+.+|.+-+.-. .. +..-|.++|++|.|||-||++|+...+ .-|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs----------L~FlSVKGP-- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS----------LNFLSVKGP-- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce----------eeEEeecCH--
Confidence 45678888888888876431 11 234688999999999999999988763 234444332
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCC
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 275 (896)
+++... .+.+++...+...+.-..++++|.||.+++
T Consensus 740 --ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222221 223344444444444566999999999875
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.0089 Score=54.74 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
..-|+|.||+|+||||+++.+.+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 35689999999999999999999884
No 275
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.99 E-value=0.025 Score=67.30 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=38.6
Q ss_pred ccccchhHHHHHHHHHhhcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..++|-+..++.+.+.+... ......+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999998887631 1234578899999999999999998775
No 276
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.99 E-value=0.054 Score=58.22 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=44.8
Q ss_pred HhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 002655 172 CITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQR-QHHFDVVIWGVVSREPKLDKIQDAIGKRIGL 240 (896)
Q Consensus 172 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 240 (896)
.|..+-....++-|+|++|+|||+++.+++.....+.. ...=..++|++....+++..+.+ +++.++.
T Consensus 94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 34333234678999999999999999999866420000 01114899999988888776654 4455554
No 277
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.96 E-value=0.07 Score=57.28 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=59.3
Q ss_pred hhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhc-CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc------
Q 002655 173 ITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQ-HHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW------ 245 (896)
Q Consensus 173 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~------ 245 (896)
|..+-....++-|+|.+|+|||+++..++-....+... ..-..++|++....++++.+ .+|++.++...+..
T Consensus 116 L~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~ 194 (342)
T PLN03186 116 LEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAY 194 (342)
T ss_pred hcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEE
Confidence 44332345788899999999999999887543210011 12237999999998888776 45567666543210
Q ss_pred -cccCHHHHHHHHH---HHh-cCCcEEEEEeccC
Q 002655 246 -MDKSLEEKALDIS---NIL-SRKKFVLLLDDIW 274 (896)
Q Consensus 246 -~~~~~~~~~~~l~---~~l-~~k~~LlVlDdv~ 274 (896)
...+.++....+. ..+ ..+.-|||+|.+-
T Consensus 195 ~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 195 ARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred EecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 1122333322222 222 3355678888764
No 278
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.076 Score=57.07 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=51.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
+.++|+++|++|+||||++..++.... ...+ .+..+...... ...+-+...++.++.+.. ...+..+....+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~----~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL 312 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH----GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRAL 312 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH----HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHH
Confidence 457999999999999999999988763 2222 34455543221 223334455555665432 123445555444
Q ss_pred HHHhcC-CcEEEEEeccCC
Q 002655 258 SNILSR-KKFVLLLDDIWQ 275 (896)
Q Consensus 258 ~~~l~~-k~~LlVlDdv~~ 275 (896)
...-.. +.=+|++|-.-.
T Consensus 313 ~~lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 313 TYFKEEARVDYILIDTAGK 331 (436)
T ss_pred HHHHhccCCCEEEEeCccc
Confidence 433221 345777887643
No 279
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95 E-value=0.025 Score=54.66 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=66.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcC---CCC--EEEEEEeCCCCCHHHHHHHHHHHhCCCcc----cccccC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH---HFD--VVIWGVVSREPKLDKIQDAIGKRIGLSAE----SWMDKS 249 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 249 (896)
.-.+++|+|+.|.|||||.+.+..+........ .|. .+.|+ .+ .+.++.+++... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 447899999999999999999864321000001 111 12332 11 355666665321 011111
Q ss_pred -HHHHHHHHHHHhcCC--cEEEEEeccCCccc---ccccccCcCC-CCCCcEEEEecCChhhhccCCCCceEEe
Q 002655 250 -LEEKALDISNILSRK--KFVLLLDDIWQPID---LTELGIPLQS-LNVSSKVVFTTRSLDVCGSMEADEKIEV 316 (896)
Q Consensus 250 -~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~~~~~~~~~~~l 316 (896)
-+...-.+.+.+..+ +-++++|+.-..-+ .+.+...+.. ...|..||++|.+.+.... .++.+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122334455666667 78899999754322 2222222211 1246678888888776532 4455554
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.95 E-value=0.06 Score=55.13 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=58.2
Q ss_pred hhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc--------
Q 002655 173 ITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES-------- 244 (896)
Q Consensus 173 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------- 244 (896)
|..+=....++.|+|.+|+|||++|.++..... ..=..++|+.... +..++.+.+ ++++.....
T Consensus 18 l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-----~~g~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~ 89 (234)
T PRK06067 18 LGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL-----KQGKKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLR 89 (234)
T ss_pred hCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH-----hCCCEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCce
Confidence 333333568999999999999999999866542 2235788888764 345555554 334432111
Q ss_pred ----------ccccCHHHHHHHHHHHhcC-CcEEEEEeccC
Q 002655 245 ----------WMDKSLEEKALDISNILSR-KKFVLLLDDIW 274 (896)
Q Consensus 245 ----------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 274 (896)
....+.++....+.+.+.. +.-++|+|.+.
T Consensus 90 i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 90 IFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred EEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334556666666653 56689999875
No 281
>PRK07667 uridine kinase; Provisional
Probab=95.95 E-value=0.01 Score=58.58 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=31.9
Q ss_pred HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 166 LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
.+.+.+.+........+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556666665544568999999999999999999988773
No 282
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.94 E-value=0.016 Score=55.97 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE------eCCCCCHHHHHHHHHHHhCCCcccccccCHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV------VSREPKLDKIQDAIGKRIGLSAESWMDKSLEE 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 252 (896)
.-.+++|+|+.|.|||||++.+..... ...+.+++. +.+... + ..-+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~------p~~G~i~~~g~~i~~~~q~~~-------------L-------SgGq~ 77 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI------PNGDNDEWDGITPVYKPQYID-------------L-------SGGEL 77 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC------CCCcEEEECCEEEEEEcccCC-------------C-------CHHHH
Confidence 447999999999999999999987652 122333321 111110 1 11223
Q ss_pred HHHHHHHHhcCCcEEEEEeccCCccc---ccccccCcCC--CCCCcEEEEecCChhhhc
Q 002655 253 KALDISNILSRKKFVLLLDDIWQPID---LTELGIPLQS--LNVSSKVVFTTRSLDVCG 306 (896)
Q Consensus 253 ~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~--~~~gs~IivTtR~~~v~~ 306 (896)
..-.+.+.+..++-++++|+--..-+ ...+...+.. ...+..||++|.+.....
T Consensus 78 qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 78 QRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 34456667777888999999754322 1111111111 112256777777765544
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.94 E-value=0.047 Score=52.13 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
++.|+|.+|+||||++..++.... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEECCcchH
Confidence 368999999999999999988873 2335677877765543
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.94 E-value=0.022 Score=55.46 Aligned_cols=127 Identities=20% Similarity=0.182 Sum_probs=65.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc------------cc
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES------------WM 246 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~ 246 (896)
.-.+++|+|..|.|||||++.++.... .-.+.+++.-. +.......+.+.++.-.+. ..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~ 97 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK------PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC------CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcc
Confidence 347899999999999999999987652 11233333211 1111111111111110000 00
Q ss_pred ccC-HHHHHHHHHHHhcCCcEEEEEeccCCcccc---cccccCcCCCCCCcEEEEecCChhhhccCCCCceEEe
Q 002655 247 DKS-LEEKALDISNILSRKKFVLLLDDIWQPIDL---TELGIPLQSLNVSSKVVFTTRSLDVCGSMEADEKIEV 316 (896)
Q Consensus 247 ~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 316 (896)
.-+ -+...-.+.+.+..++-++++|+....-|. +.+...+.....+..||++|.+.+.... .++.+.+
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 111 123334466677788889999998653221 1121112111235678888888776542 3455544
No 285
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.93 E-value=0.0097 Score=59.02 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHH---HHHHHhCCCcccccccCHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQD---AIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
+++.|+|+.|.||||++..+..... ......++..-. +. +.... .+..+-. ...+.......+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~-----~~~~~~i~t~e~-~~--E~~~~~~~~~i~q~~------vg~~~~~~~~~i 67 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN-----KNKTHHILTIED-PI--EFVHESKRSLINQRE------VGLDTLSFENAL 67 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh-----hcCCcEEEEEcC-Cc--cccccCccceeeecc------cCCCccCHHHHH
Confidence 5789999999999999998877662 222333333211 11 10000 0111100 011122344556
Q ss_pred HHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhh
Q 002655 258 SNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDV 304 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v 304 (896)
+..+...+=.+++|++.+.+.+...... ...|..++.|+-..++
T Consensus 68 ~~aLr~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 68 KAALRQDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred HHHhcCCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 7777777889999999876655443222 1235567777765443
No 286
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.92 E-value=0.015 Score=55.76 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC--CCCHHHHHHHHHHHhCCCcccccccCHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR--EPKLDKIQDAIGKRIGLSAESWMDKSLEEKALD 256 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 256 (896)
.-.+++|+|..|.|||||.+.++... ....+.+++.-.. ..+.... ..+.++... +-..-+...-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~------~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~ 92 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY------KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVE 92 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHH
Confidence 34789999999999999999998765 2334455543211 1111111 111122110 11222334445
Q ss_pred HHHHhcCCcEEEEEeccCCccc---ccccccCcCC-CCCCcEEEEecCChhhhc
Q 002655 257 ISNILSRKKFVLLLDDIWQPID---LTELGIPLQS-LNVSSKVVFTTRSLDVCG 306 (896)
Q Consensus 257 l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~~ 306 (896)
+.+.+..++-++++|+.-..-| ...+...+.. ...|..||++|.+...+.
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6677777888999999755322 2222222211 123667888888766433
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=95.91 E-value=0.041 Score=60.85 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCH--HHHHHHHHHHhCCCcccc-cccCHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKL--DKIQDAIGKRIGLSAESW-MDKSLEEKAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~~~ 255 (896)
...+|.++|.+|+||||.|..++.... ...-..+..|.+. .+.+ .+-+...++..+++.... ...+..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~----~~~G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~ 173 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK----KKKKKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAK 173 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH----HhcCCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence 468999999999999999998888763 1211234444443 3333 234555666666542211 1234444443
Q ss_pred HHHHHhcCCcE-EEEEeccC
Q 002655 256 DISNILSRKKF-VLLLDDIW 274 (896)
Q Consensus 256 ~l~~~l~~k~~-LlVlDdv~ 274 (896)
...+....+.| ++|+|-.-
T Consensus 174 ~a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCC
Confidence 33333333334 67777654
No 288
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.024 Score=54.78 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=64.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC--CCCHHHHHHHHHHHhCCCcc--cccc-------
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR--EPKLDKIQDAIGKRIGLSAE--SWMD------- 247 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~--~~~~------- 247 (896)
.-.+++|+|+.|.|||||.+.++.... ...+.+++.-.. ....... .+.++.-.. ....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~------~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~l 96 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD------PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENI 96 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC------CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHh
Confidence 457999999999999999999988752 223333332110 0011111 111111000 0000
Q ss_pred -cCHHHHHHHHHHHhcCCcEEEEEeccCCccc---ccccccCcCCCCCCcEEEEecCChhhhccCCCCceEEe
Q 002655 248 -KSLEEKALDISNILSRKKFVLLLDDIWQPID---LTELGIPLQSLNVSSKVVFTTRSLDVCGSMEADEKIEV 316 (896)
Q Consensus 248 -~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 316 (896)
..-+...-.+.+.+..++-++++|+-...-| ...+...+.....+..||++|.+.+.... .++.+.+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1112233346667777888999999765322 12221112111224678888887766543 4444444
No 289
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.88 E-value=0.088 Score=56.44 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=59.8
Q ss_pred hhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhh-hcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc------
Q 002655 173 ITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQ-RQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW------ 245 (896)
Q Consensus 173 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~------ 245 (896)
|..+=....++-|+|.+|+|||+|+.+++-....+. ....-..++|++....|+++.+.+ +++.++...+..
T Consensus 119 LgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~ 197 (344)
T PLN03187 119 LGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIY 197 (344)
T ss_pred cCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEE
Confidence 443333457888999999999999998864431111 112235889999999888887655 566666543210
Q ss_pred -cccCHHHHH---HHHHHHh-cCCcEEEEEeccC
Q 002655 246 -MDKSLEEKA---LDISNIL-SRKKFVLLLDDIW 274 (896)
Q Consensus 246 -~~~~~~~~~---~~l~~~l-~~k~~LlVlDdv~ 274 (896)
...+.++.. ..+...+ ..+--|||+|.+-
T Consensus 198 ~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 198 ARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred ecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 112333322 2222233 2345578888874
No 290
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.47 Score=53.69 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=85.1
Q ss_pred cccchhHHHHHHHHHhhc-----------cCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 158 TVVGQESMLDQVWRCITD-----------QEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
++=|-++.+.+|-+.+.- +-+..+-|..+|+||.|||++|+++++... ..| +.++..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~-----~nF-----lsvkgp-- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG-----MNF-----LSVKGP-- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc-----CCe-----eeccCH--
Confidence 344566665555544321 123567888999999999999999999862 444 222211
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCcCCCCC--
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPID-------------LTELGIPLQSLNV-- 291 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~-- 291 (896)
+++... .+.++........+.=+-.+.++.||.++...- +..+...+.....
T Consensus 503 --EL~sk~-----------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 503 --ELFSKY-----------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred --HHHHHh-----------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 111111 122222222223333344678999998864210 1111112211111
Q ss_pred CcEEEEecCChhhhc--cCC---CCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHH
Q 002655 292 SSKVVFTTRSLDVCG--SME---ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELA 347 (896)
Q Consensus 292 gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~ 347 (896)
+--||-.|..++... .+. .++.+.++.-+.+.-.++|+.++........-++.+++
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 222333333333311 122 34567777778888888999888665543333444443
No 291
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.044 Score=59.25 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=53.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
..++++++|+.|+||||++.+++.... .......+..+..... ....+-++..++.++.+... ..+..+....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~---~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l 210 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV---MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL 210 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH
Confidence 347999999999999999999988762 1112235555553322 23456677777777765432 12222233333
Q ss_pred HHHhcCCcEEEEEeccCC
Q 002655 258 SNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv~~ 275 (896)
..+.++ =+|++|..-.
T Consensus 211 -~~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 211 -AELRNK-HMVLIDTIGM 226 (374)
T ss_pred -HHhcCC-CEEEEcCCCC
Confidence 234444 4566898743
No 292
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.85 E-value=0.019 Score=55.59 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=64.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC--CCCHHHHHHHHHHHhCCCccc--cc--------
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR--EPKLDKIQDAIGKRIGLSAES--WM-------- 246 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~--~~-------- 246 (896)
.-.+++|+|..|.|||||++.++.... ...+.+++.-.. ..+..... ..++.-.+. ..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~l 96 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR------PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENI 96 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC------CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHC
Confidence 347899999999999999999987652 222333332110 11111111 111110000 00
Q ss_pred ccCHHHHHHHHHHHhcCCcEEEEEeccCCccc---ccccccCcCC-CCCCcEEEEecCChhhhccCCCCceEEe
Q 002655 247 DKSLEEKALDISNILSRKKFVLLLDDIWQPID---LTELGIPLQS-LNVSSKVVFTTRSLDVCGSMEADEKIEV 316 (896)
Q Consensus 247 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~~~~~~~~~~~l 316 (896)
-..-+...-.+.+.+..++-++++|+....-| ...+...+.. ...|..||++|.+.+... . .++.+.+
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 01122233445666777788999999765322 1122112211 123667888888776654 2 4455544
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.84 E-value=0.05 Score=60.15 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcccc-cccCHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAESW-MDKSLEEKALD 256 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~ 256 (896)
...++.++|.+|+||||.|..++.... .+.. ..+.-|++.... ...+-+...++..+.+.... ...+..+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~---~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK---KKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH---HhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 467999999999999999999887752 1122 234444443221 12334555666666553221 12334444444
Q ss_pred HHHHhcCCcE-EEEEeccC
Q 002655 257 ISNILSRKKF-VLLLDDIW 274 (896)
Q Consensus 257 l~~~l~~k~~-LlVlDdv~ 274 (896)
..+....+.+ +||+|-.-
T Consensus 174 al~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 4444444444 78888764
No 294
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.1 Score=57.01 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhc-CCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcccccccCHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQ-HHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAESWMDKSLEEKALD 256 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 256 (896)
..++|.++|+.|+||||.+..++.... ... ..-..+..+++.... .....+..+++.++.+.. .....++....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~--~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG--INSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHH
Confidence 457999999999999999999987763 111 122345555554321 233346677777776532 22334444444
Q ss_pred HHHHhcCCcEEEEEeccCC
Q 002655 257 ISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 257 l~~~l~~k~~LlVlDdv~~ 275 (896)
+.+. .+.-+|++|.+..
T Consensus 249 L~~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIGK 265 (388)
T ss_pred HHHh--CCCCEEEEcCCCC
Confidence 4432 4456888898743
No 295
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.82 E-value=0.012 Score=64.92 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=38.9
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHh
Confidence 46899999999999888766 567899999999999999998875
No 296
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.81 E-value=0.1 Score=54.41 Aligned_cols=91 Identities=21% Similarity=0.211 Sum_probs=52.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCH--HHHHHHHHHHhCCCccc-ccccCHHH-HH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKL--DKIQDAIGKRIGLSAES-WMDKSLEE-KA 254 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~-~~ 254 (896)
..+++.++|++|+||||++..++.... .. -..+..+.+.. +.. .+-+...++..+.+... ....+... ..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~----~~-g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK----KQ-GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH----hc-CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHH
Confidence 568999999999999999999987763 22 23566665443 332 23345556666643211 01122222 22
Q ss_pred HHHHHHhcCCcEEEEEeccCC
Q 002655 255 LDISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 255 ~~l~~~l~~k~~LlVlDdv~~ 275 (896)
..+.....+..=++++|-.-.
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCC
Confidence 334444445556788887643
No 297
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.77 E-value=0.021 Score=57.23 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHH
Q 002655 165 MLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQ 231 (896)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 231 (896)
...++++.+.....+..+|+|.|+||+|||||...+...++ .+++--.++-|+-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~---~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR---ERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH---HTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh---hcCCceEEEEECCCCCCCCCccc
Confidence 44566666666555778999999999999999999988885 23333466666666666544443
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.76 E-value=0.37 Score=53.16 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=36.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLS 241 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~ 241 (896)
...+|.++|.+|+||||+|..++.... +..+ .+..|++.... ...+.++..++..+.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~----~~G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ----RKGF-KPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH----HCCC-CEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 468999999999999999999987763 2222 44555443221 2233344555555544
No 299
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.75 E-value=0.034 Score=53.39 Aligned_cols=127 Identities=15% Similarity=0.207 Sum_probs=64.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC---EEEEEEeCCCCC--HHHHHHHHHHHhCCCcccccccCHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD---VVIWGVVSREPK--LDKIQDAIGKRIGLSAESWMDKSLEEK 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~---~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 253 (896)
.-.+++|+|..|.|||||++.++.......-.-.++ .+.++ .+... ...+...+... ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 447899999999999999999988752110000011 12222 22221 11233333210 110 11222334
Q ss_pred HHHHHHHhcCCcEEEEEeccCCccc---ccccccCcCCCCCCcEEEEecCChhhhccCCCCceEEe
Q 002655 254 ALDISNILSRKKFVLLLDDIWQPID---LTELGIPLQSLNVSSKVVFTTRSLDVCGSMEADEKIEV 316 (896)
Q Consensus 254 ~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l 316 (896)
.-.+.+.+..++-++++|+--..-| ...+...+... +..||++|.+..... ..++.+.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 4456667777888899998754322 12222222211 356888887766543 23445544
No 300
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.74 E-value=0.092 Score=53.58 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=35.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIG 239 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 239 (896)
...++.|.|.+|+||||+|.+++.... ..-..++|++... +...+... +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-----~~g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-----RDGDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-----hcCCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 457999999999999999998876542 2235678887643 34444433 44444
No 301
>PTZ00035 Rad51 protein; Provisional
Probab=95.74 E-value=0.11 Score=56.04 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhh-hhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc----
Q 002655 171 RCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIE-QRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW---- 245 (896)
Q Consensus 171 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---- 245 (896)
+.|..+-....++.|+|.+|+|||||+..++-....+ .....-..++|++....++.+.+ .++++.++......
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNI 187 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhce
Confidence 3444433356899999999999999999887544200 01112246779988777777663 44566655432110
Q ss_pred ---cccCHHHHHHHH---HHHh-cCCcEEEEEeccC
Q 002655 246 ---MDKSLEEKALDI---SNIL-SRKKFVLLLDDIW 274 (896)
Q Consensus 246 ---~~~~~~~~~~~l---~~~l-~~k~~LlVlDdv~ 274 (896)
...+.++....+ .+.+ ..+--|||+|.+.
T Consensus 188 ~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 188 AYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred EEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 112233333332 2223 2355688888874
No 302
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.18 Score=56.26 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=85.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
..-|.++|++|.|||-||++|+|... ..| +++..+ +++... .+.++......+++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag-----~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG-----ANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc-----Cce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHH
Confidence 45678999999999999999999863 444 333321 222222 11222222333334
Q ss_pred HhcCCcEEEEEeccCCc-------cc------ccccccCcCC--CCCCcEEEEecCChhhhccC-----CCCceEEeccC
Q 002655 260 ILSRKKFVLLLDDIWQP-------ID------LTELGIPLQS--LNVSSKVVFTTRSLDVCGSM-----EADEKIEVKYL 319 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~-------~~------~~~~~~~l~~--~~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L 319 (896)
.-...+++|.||.++.. .. ...+...+.. ...|--||-.|..+++.... .-+...-++.-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 44568999999998642 11 1112122211 22455677777666663221 12456677888
Q ss_pred ChHHHHHHHHHhhCC--cccCCCccHHHHHHHHHHHcCCch
Q 002655 320 VHDEAWRLFQEKVGE--ATLRCHSDILELAQTLARECCGLP 358 (896)
Q Consensus 320 ~~~ea~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~g~P 358 (896)
+.+|-.++++..... .....+-++.++++. .+|.|.-
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888988999887763 222333445555442 2454543
No 303
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.70 E-value=0.024 Score=59.89 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
....++|||++|.|||.+|+++++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999987
No 304
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.70 E-value=0.34 Score=51.22 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=32.8
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.++=..+....+..++..+ +.|.|.|++|+||||+|+.++...
T Consensus 46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHH
Confidence 3444444556677777544 568999999999999999999887
No 305
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.04 Score=60.02 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=36.0
Q ss_pred cccchh---HHHHHHHHHhhccC-------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 158 TVVGQE---SMLDQVWRCITDQE-------KNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 158 ~~vGr~---~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++-|-| .++++|+++|.+.. .=.+-|.++|++|.|||-||++|+-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 356766 45677888887641 224678899999999999999998776
No 306
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.66 E-value=0.018 Score=58.54 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=48.0
Q ss_pred HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHH
Q 002655 166 LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQD 232 (896)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 232 (896)
-.+++..+.....+..+|+|.|.||+|||||...+...+. ..++--.++-|+-|.+++--.++.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~---~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELR---ERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHH---HCCcEEEEEEECCCCCCCCccccc
Confidence 3456677776666788999999999999999999988874 445545677777777776555544
No 307
>PRK06547 hypothetical protein; Provisional
Probab=95.63 E-value=0.017 Score=55.65 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 170 WRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 170 ~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+... ...+|+|.|++|+||||+|+.+....
T Consensus 7 ~~~~~~~--~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 7 AARLCGG--GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHhhcC--CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334443 67899999999999999999998765
No 308
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.62 E-value=0.089 Score=56.13 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=44.8
Q ss_pred HhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhh-hcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 002655 172 CITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQ-RQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLS 241 (896)
Q Consensus 172 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 241 (896)
.|..+-....++.|+|.+|+|||||+..++.....+. ....-..++|++....++... +.++++.++..
T Consensus 88 ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 88 LLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred HhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 3444333568999999999999999998876432000 111224679999888777775 44456666543
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=95.59 E-value=0.11 Score=55.69 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=51.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCccc-ccccCHHHHH-
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK--LDKIQDAIGKRIGLSAES-WMDKSLEEKA- 254 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~- 254 (896)
+..+|.++|++|+||||++..++.... ...+ .++.+.. +.+. ..+-+...++.++.+... ....+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~----~~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~ 212 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK----KNGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAY 212 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH----HcCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHH
Confidence 468999999999999999999887763 2333 3444432 3332 234456677777764321 1122222222
Q ss_pred HHHHHHhcCCcEEEEEeccCC
Q 002655 255 LDISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 255 ~~l~~~l~~k~~LlVlDdv~~ 275 (896)
..+...-....=+|++|-+-.
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCc
Confidence 222222222233888998754
No 310
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.58 E-value=0.095 Score=56.24 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=42.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQR-QHHFDVVIWGVVSREPKLDKIQDAIGKRIGL 240 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 240 (896)
...++-|+|.+|+|||+++.+++.....+.. ...-..++||+....++...+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 4578899999999999999999776521000 0111389999998888877654 44555554
No 311
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.58 E-value=0.068 Score=52.89 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=44.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC---EEEEEEeCCCCCHHHHHHHHHHH-hCCCcccccccCHHHHHHHH
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD---VVIWGVVSREPKLDKIQDAIGKR-IGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~l 257 (896)
||+|.|.+|+||||+|+.+..... +.... ....+..............-... -.........-+.+.+.+.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l 76 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN----KRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDL 76 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT----TCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----ccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHH
Confidence 799999999999999999998873 22232 23333333222222222221111 01111122345566677777
Q ss_pred HHHhcCCcEEE
Q 002655 258 SNILSRKKFVL 268 (896)
Q Consensus 258 ~~~l~~k~~Ll 268 (896)
.....++..-+
T Consensus 77 ~~L~~g~~i~~ 87 (194)
T PF00485_consen 77 KALKNGGSIEI 87 (194)
T ss_dssp HHHHTTSCEEE
T ss_pred HHHhCCCcccc
Confidence 76666665433
No 312
>PRK04328 hypothetical protein; Provisional
Probab=95.57 E-value=0.066 Score=55.24 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=36.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGL 240 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 240 (896)
...++.|.|.+|.|||+||.++..... ..-..++|++... ++.++.+ .+++++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-----~~ge~~lyis~ee--~~~~i~~-~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-----QMGEPGVYVALEE--HPVQVRR-NMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCcEEEEEeeC--CHHHHHH-HHHHcCC
Confidence 457999999999999999999766542 2235678887655 3444433 3444543
No 313
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.09 Score=55.98 Aligned_cols=98 Identities=24% Similarity=0.312 Sum_probs=58.0
Q ss_pred HHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccc
Q 002655 168 QVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMD 247 (896)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 247 (896)
++-+.|-.+--.-.+|.|-|-+|||||||..+++.+.. +.. .+++|+-.. +..++ +--++.++.+.+...
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA----~~~--~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~- 150 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA----KRG--KVLYVSGEE--SLQQI-KLRADRLGLPTNNLY- 150 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH----hcC--cEEEEeCCc--CHHHH-HHHHHHhCCCccceE-
Confidence 33333444322347999999999999999999999984 222 677775433 33332 334566775543311
Q ss_pred cCHHHHHHHHHHHh-cCCcEEEEEeccCC
Q 002655 248 KSLEEKALDISNIL-SRKKFVLLLDDIWQ 275 (896)
Q Consensus 248 ~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 275 (896)
.-.+...+.|.+.+ ..++-++|+|-+..
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 11122223333333 36889999999853
No 314
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.036 Score=56.65 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=50.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
++|.++|+||.|||+|.++.+.+.+..- .+.+....-+.+.. ..+....... .++-.....++|.+.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~-~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRT-NDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeee-cCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 7899999999999999999999985221 23333333333321 2233222211 234455666777777
Q ss_pred hcCCc--EEEEEeccCC
Q 002655 261 LSRKK--FVLLLDDIWQ 275 (896)
Q Consensus 261 l~~k~--~LlVlDdv~~ 275 (896)
+.++. +.+.+|.|..
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 77655 4456788864
No 315
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.56 E-value=0.079 Score=54.89 Aligned_cols=125 Identities=17% Similarity=0.103 Sum_probs=67.4
Q ss_pred HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE---eCCCCCHHHHHHHHHHHhC-CC
Q 002655 166 LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV---VSREPKLDKIQDAIGKRIG-LS 241 (896)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l~-~~ 241 (896)
.+.++..+... ....-++|+|+.|.|||||.+.++.... ...+.+++. +...... .+++.... .+
T Consensus 98 ~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~~------~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~ 166 (270)
T TIGR02858 98 ADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARILS------TGISQLGLRGKKVGIVDER----SEIAGCVNGVP 166 (270)
T ss_pred HHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCccC------CCCceEEECCEEeecchhH----HHHHHHhcccc
Confidence 34444444433 2457899999999999999999988763 222333332 1111112 22322221 11
Q ss_pred cccc-c---ccCHHHHHHHHHHHh-cCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCChhh
Q 002655 242 AESW-M---DKSLEEKALDISNIL-SRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDV 304 (896)
Q Consensus 242 ~~~~-~---~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v 304 (896)
.... . ..+.......+...+ ...+-++++|.+...+.+..+...+. .|..||+||-+..+
T Consensus 167 q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 167 QHDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred cccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 1110 0 000011122233333 35889999999977666665544432 47789999987555
No 316
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.54 E-value=0.084 Score=52.48 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=74.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE----------------------eCCCC-----------
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV----------------------VSREP----------- 225 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~----------------------~s~~~----------- 225 (896)
.-.+++|+|+.|+|||||...+.--.++ -.+.+++. +-|.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p------t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~EN 103 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP------TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLEN 103 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC------CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHH
Confidence 4479999999999999999887654321 11111111 11111
Q ss_pred -------------CHHHHHHHHHHHhCCCccc-----ccccCHHHHHHHHHHHhcCCcEEEEEeccCCc------ccccc
Q 002655 226 -------------KLDKIQDAIGKRIGLSAES-----WMDKSLEEKALDISNILSRKKFVLLLDDIWQP------IDLTE 281 (896)
Q Consensus 226 -------------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~~ 281 (896)
........+++.+++.... ..-..-++....+.+.|...+-+|+-|+--.. ....+
T Consensus 104 v~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ 183 (226)
T COG1136 104 VELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183 (226)
T ss_pred HHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHH
Confidence 1123344555665654211 11223344556678888899999999985321 12222
Q ss_pred cccCcCCCCCCcEEEEecCChhhhccCCCCceEEec
Q 002655 282 LGIPLQSLNVSSKVVFTTRSLDVCGSMEADEKIEVK 317 (896)
Q Consensus 282 ~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~ 317 (896)
+...+ ....|.-||+.|-+..++.. .+++|.+.
T Consensus 184 ll~~~-~~~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 184 LLREL-NKERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred HHHHH-HHhcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 22122 12347789999999999875 34555543
No 317
>PHA00729 NTP-binding motif containing protein
Probab=95.53 E-value=0.017 Score=57.30 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=26.9
Q ss_pred HHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 169 VWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+++.+... +...|.|+|.+|+||||||..+.+..
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44444444 55678999999999999999998875
No 318
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.53 E-value=0.025 Score=55.14 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44799999999999999999998654
No 319
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.51 E-value=0.11 Score=54.76 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc---cccCHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW---MDKSLEEKAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~ 255 (896)
..+++-|+|+.|+||||||..+..... ..-..++|+.....+++ ..++++|+..+.. .....++...
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q-----~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~ 121 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ-----KQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALW 121 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-----HTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh-----cccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHH
Confidence 357999999999999999999887763 23457889998776654 3455666654331 2344556655
Q ss_pred HHHHHhcC-CcEEEEEeccCC
Q 002655 256 DISNILSR-KKFVLLLDDIWQ 275 (896)
Q Consensus 256 ~l~~~l~~-k~~LlVlDdv~~ 275 (896)
.+.+.++. .--++|+|-|-.
T Consensus 122 ~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CTT
T ss_pred HHHHHhhcccccEEEEecCcc
Confidence 55565644 445899999865
No 320
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.46 E-value=0.012 Score=46.79 Aligned_cols=23 Identities=35% Similarity=0.666 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|+|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 321
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.45 E-value=0.057 Score=55.94 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+..++.|+|.+|+|||||+..+.+..
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999886
No 322
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.44 E-value=0.05 Score=49.67 Aligned_cols=102 Identities=20% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCC-ccccCCCcCcEEeccCCCccccchh-hhcCCCC
Q 002655 532 IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLP-SGLSSLISLEHLDLSFTVIRELPEE-MKALVNL 609 (896)
Q Consensus 532 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L 609 (896)
+..+++|+.+.+.. .+..+....|.++.+|+.+.+..+ +..++ ..+..+..|+.+.+.. .+..++.. +.++.+|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44455555555543 344555555555555555555443 33322 2344444555555543 33333332 3335555
Q ss_pred cEEeccccccccccccccCCCCccceeecc
Q 002655 610 RYLNLEYVYLNRLPLQLLCNFTKLQALRML 639 (896)
Q Consensus 610 ~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~ 639 (896)
+.+++..+ +..++...+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555443 444444445554 55555544
No 323
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.42 E-value=0.012 Score=53.68 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNK 203 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~ 203 (896)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999887
No 324
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.044 Score=55.35 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=71.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhh--hhc------CCC---CEEEEEEe----CCCC--C---------------
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIE--QRQ------HHF---DVVIWGVV----SREP--K--------------- 226 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~------~~f---~~~~wv~~----s~~~--~--------------- 226 (896)
....++|+|+.|.|||||.+.+..-..+. ++. ..+ ..+.||.= ...+ +
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 34799999999999999999998743210 010 001 24555531 1111 0
Q ss_pred -------HHHHHHHHHHHhCCCcc---cccccC-HHHHHHHHHHHhcCCcEEEEEeccCC------cccccccccCcCCC
Q 002655 227 -------LDKIQDAIGKRIGLSAE---SWMDKS-LEEKALDISNILSRKKFVLLLDDIWQ------PIDLTELGIPLQSL 289 (896)
Q Consensus 227 -------~~~~~~~i~~~l~~~~~---~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~------~~~~~~~~~~l~~~ 289 (896)
..+...+.++.+++..- ....-+ -+.....|.+.|..++=|++||.--. ...+.++...+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~- 187 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ- 187 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 12344455555555321 111112 22334457788999999999998533 2333444444433
Q ss_pred CCCcEEEEecCChhhhc
Q 002655 290 NVSSKVVFTTRSLDVCG 306 (896)
Q Consensus 290 ~~gs~IivTtR~~~v~~ 306 (896)
.|.-|+++|-+-+...
T Consensus 188 -eg~tIl~vtHDL~~v~ 203 (254)
T COG1121 188 -EGKTVLMVTHDLGLVM 203 (254)
T ss_pred -CCCEEEEEeCCcHHhH
Confidence 2888999998866544
No 325
>PTZ00494 tuzin-like protein; Provisional
Probab=95.40 E-value=0.41 Score=51.66 Aligned_cols=165 Identities=13% Similarity=0.066 Sum_probs=97.2
Q ss_pred cccccchhHHHHHHHHHhhcc-CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 156 ERTVVGQESMLDQVWRCITDQ-EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
...+|.|+.+-..+.+.|..- ...++++.+.|.-|.||++|.+....... -..++|.+... ++-++.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~--------~paV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG--------VALVHVDVGGT---EDTLRSV 438 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC--------CCeEEEEecCC---cchHHHH
Confidence 456899998888777777653 33679999999999999999998876652 24677777654 4557888
Q ss_pred HHHhCCCcccccccCHHHHHHHH---HHHhcCCcEEEEEeccCCccccccc---ccCcCCCCCCcEEEEecCChhhhcc-
Q 002655 235 GKRIGLSAESWMDKSLEEKALDI---SNILSRKKFVLLLDDIWQPIDLTEL---GIPLQSLNVSSKVVFTTRSLDVCGS- 307 (896)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l---~~~l~~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~IivTtR~~~v~~~- 307 (896)
.+.++++.-+.-.+-.+-..+.. .....++.-+||+-=- +-..+..+ ...+.....-|.|++----+.+...
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 88898875332222222222222 2224455556665311 11111111 0112222334566654332222111
Q ss_pred --CCCCceEEeccCChHHHHHHHHHhh
Q 002655 308 --MEADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 308 --~~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
...-..|.+++++.++|.++-.+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 1112468899999999999877654
No 326
>PTZ00301 uridine kinase; Provisional
Probab=95.40 E-value=0.041 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..+|+|.|.+|+||||+|+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999998776
No 327
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.047 Score=53.62 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
.+.+|+|.|.+|+||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999998873
No 328
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.001 Score=65.92 Aligned_cols=98 Identities=29% Similarity=0.289 Sum_probs=68.8
Q ss_pred cccceeeeccccCccccCCCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCC--ccccCCCcCcEEe
Q 002655 513 WEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLP--SGLSSLISLEHLD 590 (896)
Q Consensus 513 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp--~~~~~l~~L~~L~ 590 (896)
+.+++.|++.++.+..+.-..+++.|.+|.|+-|.++.+.+ +..|++|+.|+|..| .|..+- .-+.++++|++|-
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 34677778888888777767788888888888888877765 678888888888887 555543 2466778888888
Q ss_pred ccCCCcc-ccc-----hhhhcCCCCcEEe
Q 002655 591 LSFTVIR-ELP-----EEMKALVNLRYLN 613 (896)
Q Consensus 591 l~~~~i~-~lp-----~~i~~L~~L~~L~ 613 (896)
|..|... .-+ .-+.-|+||+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 8776322 212 1345677777775
No 329
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.36 E-value=0.12 Score=50.28 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=68.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEe-------------------CCCCC-------------
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVV-------------------SREPK------------- 226 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~-------------------s~~~~------------- 226 (896)
...|++|+|+.|+|||||.+.+..-.. .=++.+|+.- -+.|+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~------~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~l 100 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE------PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTL 100 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC------CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHh
Confidence 457999999999999999999865542 1124444432 11111
Q ss_pred ------------HHHHHHHHHHHhCCCccc----ccccCHHHHHHHHHHHhcCCcEEEEEeccCCccccc---cc---cc
Q 002655 227 ------------LDKIQDAIGKRIGLSAES----WMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLT---EL---GI 284 (896)
Q Consensus 227 ------------~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---~~---~~ 284 (896)
.++...++++.+|+.... ..-..-++....|.+.|.-++-++.||..-+.-|=+ ++ ..
T Consensus 101 ap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~ 180 (240)
T COG1126 101 APVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 (240)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence 223344445555543211 011223344456788888889999999987643211 11 11
Q ss_pred CcCCCCCCcEEEEecCChhhhccC
Q 002655 285 PLQSLNVSSKVVFTTRSLDVCGSM 308 (896)
Q Consensus 285 ~l~~~~~gs~IivTtR~~~v~~~~ 308 (896)
.+ ...|-..|+.|.....|..+
T Consensus 181 ~L--A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 181 DL--AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HH--HHcCCeEEEEechhHHHHHh
Confidence 22 23455566666665555543
No 330
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.35 E-value=0.092 Score=51.58 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=37.5
Q ss_pred ccccchhHHHHHHHHHhhc--cCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 157 RTVVGQESMLDQVWRCITD--QEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
..++|.|...+.+++--.. ......-|.+||.-|+|||.|++++.+.+.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 3579999888888764332 111445678999999999999999999884
No 331
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.11 Score=53.66 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=56.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHH---HHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEE---KAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~---~~~ 255 (896)
..+++=|+|+.|.||||+|.+++-.. +..-..++|++.-..+++..+..--...+..-. .....+.++ .+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a-----q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~ 132 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA-----QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAE 132 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh-----hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHH
Confidence 55788899999999999999877665 233448999999998888765433222121100 012223333 334
Q ss_pred HHHHHhcCCcEEEEEeccCC
Q 002655 256 DISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 256 ~l~~~l~~k~~LlVlDdv~~ 275 (896)
.+.+....+--|+|+|.+-.
T Consensus 133 ~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHhccCCCCEEEEecCcc
Confidence 44444444567999998854
No 332
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0076 Score=35.56 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=7.3
Q ss_pred CcEEeccCCCccccchh
Q 002655 586 LEHLDLSFTVIRELPEE 602 (896)
Q Consensus 586 L~~L~l~~~~i~~lp~~ 602 (896)
|++||+++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 333
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.32 E-value=0.062 Score=60.32 Aligned_cols=93 Identities=23% Similarity=0.323 Sum_probs=52.6
Q ss_pred HHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc---cc
Q 002655 171 RCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW---MD 247 (896)
Q Consensus 171 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~ 247 (896)
+.|..+=....++.|.|.+|+|||||+.+++.... ..-..++|++... +..++... ++.++...+.. ..
T Consensus 71 ~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-----~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e 142 (446)
T PRK11823 71 RVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA-----AAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAE 142 (446)
T ss_pred HHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCC
Confidence 33443322456999999999999999999988763 1224678877543 33333322 45565432211 11
Q ss_pred cCHHHHHHHHHHHhcCCcEEEEEeccC
Q 002655 248 KSLEEKALDISNILSRKKFVLLLDDIW 274 (896)
Q Consensus 248 ~~~~~~~~~l~~~l~~k~~LlVlDdv~ 274 (896)
.+.++....+. +.+.-+||+|.+.
T Consensus 143 ~~l~~i~~~i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 143 TNLEAILATIE---EEKPDLVVIDSIQ 166 (446)
T ss_pred CCHHHHHHHHH---hhCCCEEEEechh
Confidence 22333333222 2355678888764
No 334
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.30 E-value=0.14 Score=56.95 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
.++++++|++|+||||++..++.... ....-..+..|+..... ...+-+...++.++++.. ...+..+....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~---~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~ 295 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA---LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALE 295 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH---HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHH
Confidence 46999999999999999998877652 01223456666654321 122334455555665432 1233344444444
Q ss_pred HHhcCCcEEEEEecc
Q 002655 259 NILSRKKFVLLLDDI 273 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv 273 (896)
+ +. ..=+|++|..
T Consensus 296 ~-~~-~~DlVlIDt~ 308 (424)
T PRK05703 296 Q-LR-DCDVILIDTA 308 (424)
T ss_pred H-hC-CCCEEEEeCC
Confidence 3 23 3567888876
No 335
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.30 E-value=0.049 Score=59.05 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=38.2
Q ss_pred ccccchhHHHHHHHHHhhcc------------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQ------------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..++|.++.++.+.-.+... +...+-|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999988887666531 1124678899999999999999998886
No 336
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.019 Score=54.73 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
+.|.+.|.+|+||||+|++++...+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4677899999999999999988874
No 337
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.29 E-value=0.033 Score=64.69 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=57.5
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
..++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+... ...++..+|..-+ ..+...+++.++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~----~~~~~~~~~~~np-~~~~~~~~~~v~~ 101 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLP----KEELQDILVYPNP-EDPNNPKIRTVPA 101 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcC----hHhHHHheEeeCC-CcchHHHHHHHHH
Confidence 45899999888888777655 4688999999999999999988762 3456788887653 3467777888877
Q ss_pred HhCC
Q 002655 237 RIGL 240 (896)
Q Consensus 237 ~l~~ 240 (896)
++|.
T Consensus 102 ~~G~ 105 (637)
T PRK13765 102 GKGK 105 (637)
T ss_pred hcCH
Confidence 6653
No 338
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.05 Score=52.71 Aligned_cols=119 Identities=24% Similarity=0.259 Sum_probs=61.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcc--c-ccc--------
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAE--S-WMD-------- 247 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~-~~~-------- 247 (896)
.-.+++|+|..|.|||||++.++.... ...+.+++.-....+.. ..+...++.-.+ . ...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK------PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLK 95 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC------CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhh
Confidence 347899999999999999999987652 22344443211100000 111111111000 0 000
Q ss_pred cC-HHHHHHHHHHHhcCCcEEEEEeccCCcccc---cccccCcCC-CCCCcEEEEecCChhhhc
Q 002655 248 KS-LEEKALDISNILSRKKFVLLLDDIWQPIDL---TELGIPLQS-LNVSSKVVFTTRSLDVCG 306 (896)
Q Consensus 248 ~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~-~~~gs~IivTtR~~~v~~ 306 (896)
-+ -+...-.+.+.+..++-++++|+.-..-|. ..+...+.. ...|..||++|.+.....
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 11 122334566777888999999997653221 112111211 123667888888776544
No 339
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.27 E-value=0.019 Score=58.05 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
-|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 340
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.24 E-value=0.069 Score=54.27 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=37.5
Q ss_pred ccccchhHHHHHHHHHhhc----c-CCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 157 RTVVGQESMLDQVWRCITD----Q-EKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
..++|-.-..+.|+..+.+ + ..+.=|++.+|++|+||.-+++.+++...
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 3467776666666666643 2 34567999999999999999999998874
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.13 Score=55.24 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=56.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
+.++++++|+.|+||||++..++.... . .. ..+.++++.... ...+-++..++.++.+.. ...+..+....+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~-~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al 277 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---K-QN-RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAV 277 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---H-cC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHH
Confidence 468999999999999999999987763 1 22 356666664332 234556677777776432 234455554444
Q ss_pred HHHh-cCCcEEEEEeccCC
Q 002655 258 SNIL-SRKKFVLLLDDIWQ 275 (896)
Q Consensus 258 ~~~l-~~k~~LlVlDdv~~ 275 (896)
...- .+..=+|++|-.-.
T Consensus 278 ~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHhcCCCCEEEEECCCC
Confidence 4332 13456788887744
No 342
>PRK08233 hypothetical protein; Provisional
Probab=95.23 E-value=0.016 Score=56.80 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998876
No 343
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.21 E-value=0.092 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 344
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.20 E-value=0.028 Score=57.34 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 178 KNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
....+++|.|+.|.|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999988873
No 345
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.19 E-value=0.14 Score=54.54 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=49.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHH--HHHHHHHHHhCCCccc-ccccCHH-HHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLD--KIQDAIGKRIGLSAES-WMDKSLE-EKA 254 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~-~~~ 254 (896)
...+++++|++|+||||++..++.... ... ..+..+.. +.+... +-+.......+.+... ....+.. ...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~----~~g-~~V~Li~~-D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~ 186 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK----AQG-KKVLLAAG-DTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAF 186 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH----hcC-CeEEEEec-CccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHH
Confidence 468999999999999999999998874 222 23444443 233322 1123334444433211 0111221 222
Q ss_pred HHHHHHhcCCcEEEEEeccCC
Q 002655 255 LDISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 255 ~~l~~~l~~k~~LlVlDdv~~ 275 (896)
..+.....+..=+|++|-.-.
T Consensus 187 ~~l~~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 187 DAIQAAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHHHHHhCCCCEEEEeCCCC
Confidence 334444445556888887643
No 346
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.17 E-value=0.006 Score=60.47 Aligned_cols=89 Identities=24% Similarity=0.228 Sum_probs=50.9
Q ss_pred CCCCCcEEEcccCcccccc----chhhccCCCccEEecccccccc----cCC-------ccccCCCcCcEEeccCCCcc-
Q 002655 534 NCPHLRTLLLYRNRISMIT----DGFFQFMPSLKVLNLGFNIFLN----KLP-------SGLSSLISLEHLDLSFTVIR- 597 (896)
Q Consensus 534 ~~~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~~~~~~----~lp-------~~~~~l~~L~~L~l~~~~i~- 597 (896)
.+..+..++++||.+..-. ...+.+-++|++.+++.- ... .+| +.+-+|++|+..+||.|-+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3556667777777643211 112444567777777654 221 122 24556778888888877554
Q ss_pred ccch----hhhcCCCCcEEecccccccccc
Q 002655 598 ELPE----EMKALVNLRYLNLEYVYLNRLP 623 (896)
Q Consensus 598 ~lp~----~i~~L~~L~~L~l~~~~l~~lp 623 (896)
..|+ -|.+-++|.||.+++|.+..+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 3333 3455667777777777655443
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.16 E-value=0.02 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
.||-|+|.+|+||||||+++.....
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999984
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.16 E-value=0.039 Score=50.09 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=29.4
Q ss_pred HHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 165 MLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
+..++-+.|...-....+|.+.|.-|.||||+++.++....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444443222347999999999999999999998863
No 349
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.15 E-value=0.1 Score=46.35 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHHHHhh----cc-CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCIT----DQ-EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~----~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..++|-+-..+.+++.+. .. ..+.-|++.+|++|+|||.+++.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 346676666666655553 32 3456799999999999999999998885
No 350
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.15 E-value=0.1 Score=58.71 Aligned_cols=96 Identities=22% Similarity=0.286 Sum_probs=52.2
Q ss_pred HHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc--
Q 002655 168 QVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW-- 245 (896)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 245 (896)
.+-+.|..+-..-.++.|.|.+|+|||||+.+++.... .. -..++|++... +..++.. -++.++...+..
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a----~~-g~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~l~~ 153 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA----KN-QMKVLYVSGEE--SLQQIKM-RAIRLGLPEPNLYV 153 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH----hc-CCcEEEEECcC--CHHHHHH-HHHHcCCChHHeEE
Confidence 33344444333457999999999999999999987763 12 13577876543 3333322 234454432211
Q ss_pred -cccCHHHHHHHHHHHhcCCcEEEEEeccC
Q 002655 246 -MDKSLEEKALDISNILSRKKFVLLLDDIW 274 (896)
Q Consensus 246 -~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 274 (896)
...+.++....+. +.+.-++|+|.+.
T Consensus 154 ~~e~~~~~I~~~i~---~~~~~~vVIDSIq 180 (454)
T TIGR00416 154 LSETNWEQICANIE---EENPQACVIDSIQ 180 (454)
T ss_pred cCCCCHHHHHHHHH---hcCCcEEEEecch
Confidence 1122333222222 2345577777764
No 351
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.14 E-value=0.054 Score=58.72 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=39.1
Q ss_pred cccccchhHHHHHHHHHhhcc------------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 156 ERTVVGQESMLDQVWRCITDQ------------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...++|.+..++.+..++... +...+.|.++|++|+|||++|+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999988877541 1124678999999999999999998876
No 352
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.14 E-value=0.018 Score=53.76 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 353
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.14 E-value=0.095 Score=57.11 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=34.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCC
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK--LDKIQDAIGKRIGLS 241 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~ 241 (896)
..+++++|++|+||||++..++.... ....+ .+..+.. +.+. ....+...++.++++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~---~~~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF---LHMGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HhcCC-eEEEecc-cchhhhHHHHHHHHHHhcCCC
Confidence 46899999999999999999987652 11222 3333332 2222 234455555666654
No 354
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.41 Score=47.14 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=82.2
Q ss_pred ccch-hHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 159 VVGQ-ESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 159 ~vGr-~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
+||+ +..+++|.+.+.-. -...+-+.++|++|.|||-||++|++.. ..-|+.+|..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c~firvsgs-- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGS-- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechH--
Confidence 4554 66666665554321 1245678899999999999999998875 2345556532
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHH-HhcCCcEEEEEeccCCcc------------c----ccccccCcCC-
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISN-ILSRKKFVLLLDDIWQPI------------D----LTELGIPLQS- 288 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~- 288 (896)
+-+++-|.+. ......+.- .-..-+.+|.+|.+++.. + ..++...+..
T Consensus 216 -elvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 216 -ELVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred -HHHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 2223322110 011111111 113567888889886521 0 1122222221
Q ss_pred -CCCCcEEEEecCChhhhccC-----CCCceEEeccCChHHHHHHHHHhh
Q 002655 289 -LNVSSKVVFTTRSLDVCGSM-----EADEKIEVKYLVHDEAWRLFQEKV 332 (896)
Q Consensus 289 -~~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~ 332 (896)
...+-+||..|..-++.... ..++.++.++-+++.-.++++-+.
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 23466888888766664321 234677888877777777776544
No 355
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.13 E-value=0.019 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998875
No 356
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.18 Score=58.01 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=76.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDIS 258 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 258 (896)
..+.+.++|++|.|||.||+++++... ..|-.+.+- . +... +...+.......+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~-----~~fi~v~~~---------~----l~sk-------~vGesek~ir~~F~ 329 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR-----SRFISVKGS---------E----LLSK-------WVGESEKNIRELFE 329 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC-----CeEEEeeCH---------H----Hhcc-------ccchHHHHHHHHHH
Confidence 456899999999999999999999652 444322211 1 1100 11222333333344
Q ss_pred HHhcCCcEEEEEeccCCcccc-------------cccccCcCC--CCCCcEEEEecCChhhhccC-----CCCceEEecc
Q 002655 259 NILSRKKFVLLLDDIWQPIDL-------------TELGIPLQS--LNVSSKVVFTTRSLDVCGSM-----EADEKIEVKY 318 (896)
Q Consensus 259 ~~l~~k~~LlVlDdv~~~~~~-------------~~~~~~l~~--~~~gs~IivTtR~~~v~~~~-----~~~~~~~l~~ 318 (896)
...+..+..|.+|+++....+ ..+...+.. ...+-.||-||-........ .....+.+.+
T Consensus 330 ~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~ 409 (494)
T COG0464 330 KARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPL 409 (494)
T ss_pred HHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCC
Confidence 444678999999998653211 111122211 12233355555544443211 2356788999
Q ss_pred CChHHHHHHHHHhhCCc
Q 002655 319 LVHDEAWRLFQEKVGEA 335 (896)
Q Consensus 319 L~~~ea~~Lf~~~~~~~ 335 (896)
-+.++..+.|.......
T Consensus 410 pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 410 PDLEERLEIFKIHLRDK 426 (494)
T ss_pred CCHHHHHHHHHHHhccc
Confidence 99999999999888643
No 357
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.85 Score=48.10 Aligned_cols=169 Identities=15% Similarity=0.042 Sum_probs=90.6
Q ss_pred HHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhh-----hhcCCCCEEEEEEe-CCCCCHHHHHHHHHHHhCCC
Q 002655 168 QVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIE-----QRQHHFDVVIWGVV-SREPKLDKIQDAIGKRIGLS 241 (896)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~ 241 (896)
.+...+..+ .-.++..++|..|.||+++|+.+.+..-.. ....+-+...++.. +......++. ++.+.+...
T Consensus 7 ~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 7 FLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 334444443 134566799999999999999998876100 01112222333321 1112222222 222222211
Q ss_pred cccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCcCCCCCCcEEEEecCC-hhhhcc-CCCCceEEec
Q 002655 242 AESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPI--DLTELGIPLQSLNVSSKVVFTTRS-LDVCGS-MEADEKIEVK 317 (896)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~-~~~~~~~~l~ 317 (896)
. .-.+.+-++|+|++.... ....+...+.....++.+|++|.+ ..+... ......+++.
T Consensus 85 ~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 85 S-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred C-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 0 002477788899986542 233444444444456777765544 334332 3346789999
Q ss_pred cCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHH
Q 002655 318 YLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTI 364 (896)
Q Consensus 318 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~ 364 (896)
++++++..+.+... + . + .+.+..++...+|.--|+..+
T Consensus 148 ~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 148 EPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred CCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 99999998887654 1 1 1 233666666777633455543
No 358
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.04 E-value=0.053 Score=55.22 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc-------------c
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES-------------W 245 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------~ 245 (896)
...++.|.|.+|+|||++|.++..... +..=..++|++... +...+.+.+. .++..... .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~----~~~ge~vlyvs~ee--~~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL----KNFGEKVLYVSFEE--PPEELIENMK-SFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH----HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh----hhcCCcEEEEEecC--CHHHHHHHHH-HcCCcHHHHhhcCCEEEEeccc
Confidence 457999999999999999999776552 11124677877654 3455555543 44432110 0
Q ss_pred c-----ccCHHHHHHHHHHHhcC-CcEEEEEeccC
Q 002655 246 M-----DKSLEEKALDISNILSR-KKFVLLLDDIW 274 (896)
Q Consensus 246 ~-----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 274 (896)
. ..+.++....+.+.++. +...+|+|.+.
T Consensus 91 ~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 91 ERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 1 34566777777776654 55789999864
No 359
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.037 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 360
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.03 E-value=0.095 Score=54.49 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=39.9
Q ss_pred cccccchhHHHHH---HHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 156 ERTVVGQESMLDQ---VWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 156 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
...+||..+..+. +++++.+..-..+.|.|+|++|.|||+||..+.....
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4668998766554 5666666645668999999999999999999999884
No 361
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.02 E-value=0.021 Score=57.14 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 362
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.01 E-value=0.038 Score=52.54 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=62.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
-.+++|+|..|.|||||++.++... ....+.+++.-...... ........++... +-..-+...-.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~------~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~---qlS~G~~~r~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL------KPTSGEILIDGKDIAKL--PLEELRRRIGYVP---QLSGGQRQRVALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC------CCCccEEEECCEEcccC--CHHHHHhceEEEe---eCCHHHHHHHHHHH
Confidence 4799999999999999999998765 23345555432211110 0111112222110 01122334444666
Q ss_pred HhcCCcEEEEEeccCCccc---ccccccCcCC-CCCCcEEEEecCChhhhcc
Q 002655 260 ILSRKKFVLLLDDIWQPID---LTELGIPLQS-LNVSSKVVFTTRSLDVCGS 307 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~~~ 307 (896)
.+...+-++++|+....-| ...+...+.. ...+..++++|.+......
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7777788999999865322 2222111211 1124678888887666543
No 363
>PRK03839 putative kinase; Provisional
Probab=95.01 E-value=0.02 Score=55.97 Aligned_cols=23 Identities=52% Similarity=0.733 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 364
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.97 E-value=0.11 Score=51.10 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=30.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
+.|.|++|+|||++|.++..... ..=..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-----~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-----ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-----HCCCcEEEEECCC--CHHHHHHH
Confidence 67899999999999999877763 1224577876543 45555444
No 365
>PRK06762 hypothetical protein; Provisional
Probab=94.97 E-value=0.022 Score=54.84 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998775
No 366
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.97 E-value=0.022 Score=56.15 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 367
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.97 E-value=0.28 Score=49.32 Aligned_cols=209 Identities=11% Similarity=0.112 Sum_probs=112.0
Q ss_pred ccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhh-hcCCCCEEEEEEeCCC----------C--
Q 002655 159 VVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQ-RQHHFDVVIWGVVSRE----------P-- 225 (896)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~~~f~~~~wv~~s~~----------~-- 225 (896)
+.++++....+......+ +.+-+.++|+.|.||-|.+..+.+.....- .+-.-+..-|.+-+.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~--d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG--DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhcccC--CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 567777777776665534 688899999999999999988887763111 1112233444432222 1
Q ss_pred ---------CHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhcCCcE-EEEEeccCCc--ccccccccCcCCCCCCc
Q 002655 226 ---------KLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILSRKKF-VLLLDDIWQP--IDLTELGIPLQSLNVSS 293 (896)
Q Consensus 226 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~gs 293 (896)
..+.+.++|+++++-..+ .+ .-..+.| ++|+-.+++. +.-.++......-...+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q------ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ------IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc------hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 122233333333321100 00 0112344 4455555431 11122222222223456
Q ss_pred EEEEecCCh--hhhccCCCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHhcCC
Q 002655 294 KVVFTTRSL--DVCGSMEADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYK 371 (896)
Q Consensus 294 ~IivTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L~~~ 371 (896)
|+|+..-+- -+...-...-.+.+...+++|....+++.+.......+ .+++.+|+++++|.---...+-..++-+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 766643221 11111112346789999999999999998876654444 6679999999998754333332222211
Q ss_pred ----------CChhHHHHHHHHhcC
Q 002655 372 ----------KNPDEWKYATKVLST 386 (896)
Q Consensus 372 ----------~~~~~w~~~~~~l~~ 386 (896)
-...+|+-++.....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHH
Confidence 234578877665543
No 368
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.95 E-value=0.15 Score=48.42 Aligned_cols=116 Identities=21% Similarity=0.176 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEe---CCCCCHHHHHHHHHHHhCCC--cc--cccccCHH-
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVV---SREPKLDKIQDAIGKRIGLS--AE--SWMDKSLE- 251 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~---s~~~~~~~~~~~i~~~l~~~--~~--~~~~~~~~- 251 (896)
...|-|++..|.||||.|...+-+.. ...+ .++.+.. .........+..+ .+... .. .+...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~----~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~ 77 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL----GHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREA 77 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH----HCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHH
Confidence 46888999999999999999887763 3333 3333322 2122333344332 11100 00 01111111
Q ss_pred ------HHHHHHHHHhcC-CcEEEEEeccCCc-----ccccccccCcCCCCCCcEEEEecCCh
Q 002655 252 ------EKALDISNILSR-KKFVLLLDDIWQP-----IDLTELGIPLQSLNVSSKVVFTTRSL 302 (896)
Q Consensus 252 ------~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~ 302 (896)
+.....++.+.. +-=|||||.+-.. -+.+++...+.....+.-||+|-|+.
T Consensus 78 ~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 78 DTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 122233444444 4569999998532 23334444444455677899999975
No 369
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.95 E-value=0.17 Score=51.43 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGL 240 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 240 (896)
...++.|.|.+|.||||+|.+++.... +.. ..+++++. ..+..++.+.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~----~~g-~~~~yi~~--e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL----QNG-YSVSYVST--QLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH----hCC-CcEEEEeC--CCCHHHHHHHH-HHhCC
Confidence 456999999999999999877766552 122 34566663 33556666665 34443
No 370
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.86 E-value=0.048 Score=50.42 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR 223 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 223 (896)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~----~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK----RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH----HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh----HcCCceEEEEEccC
Confidence 4799999999999999999999983 45666666666554
No 371
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.81 E-value=0.018 Score=51.16 Aligned_cols=28 Identities=39% Similarity=0.500 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCE
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDV 215 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~ 215 (896)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~-----~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL-----GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT-----T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc-----CCceeE
Confidence 5799999999999999999886 356643
No 372
>PRK00625 shikimate kinase; Provisional
Probab=94.80 E-value=0.024 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 373
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.79 E-value=0.082 Score=61.72 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=52.1
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
..++|.++.++.+...+... +-+.++|++|+||||+|+.+.+... ...|...+++.-+ ..+...+++.++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~----~~~~~~~~~~~n~-~~~~~~~~~~v~~ 88 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLP----DEELEDILVYPNP-EDPNMPRIVEVPA 88 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcC----chhheeEEEEeCC-CCCchHHHHHHHH
Confidence 46899998888887777655 3555999999999999999998773 2344444433322 2345566777777
Q ss_pred HhCC
Q 002655 237 RIGL 240 (896)
Q Consensus 237 ~l~~ 240 (896)
+++.
T Consensus 89 ~~g~ 92 (608)
T TIGR00764 89 GEGR 92 (608)
T ss_pred hhch
Confidence 7654
No 374
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.78 E-value=0.065 Score=59.92 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=53.5
Q ss_pred HHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEE-EeCCCC-CHHHHHHHHHHHhCCCccccc
Q 002655 169 VWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWG-VVSREP-KLDKIQDAIGKRIGLSAESWM 246 (896)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv-~~s~~~-~~~~~~~~i~~~l~~~~~~~~ 246 (896)
+++.+..-. .-.-.+|+|++|+|||||++.+++... ..+-+..++| -+.... .+.++.+.+-..+-.. ..
T Consensus 406 vIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn~i~----~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas---T~ 477 (672)
T PRK12678 406 VIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIANAIT----TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS---TF 477 (672)
T ss_pred eeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHHHHh----hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE---CC
Confidence 444444321 335678999999999999999998763 2334444333 344332 2333333321111000 01
Q ss_pred ccCH------HHHHHHHHHHh--cCCcEEEEEeccCC
Q 002655 247 DKSL------EEKALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 247 ~~~~------~~~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
+... ......+.+++ .++.+||++|++-.
T Consensus 478 D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 478 DRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 1111 12233344555 67999999999854
No 375
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.77 E-value=0.072 Score=55.23 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
+.|.|.|.||+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999998874
No 376
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.73 E-value=0.17 Score=48.88 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=63.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC---CCHHHHHHHHH--H--HhCCCcccccccCHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE---PKLDKIQDAIG--K--RIGLSAESWMDKSLE 251 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~--~--~l~~~~~~~~~~~~~ 251 (896)
....|-|+|..|-||||.|..++-+.. ...+ .+..+..-.. ......+..+- . +.+.. ..+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~----g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~ 94 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV----GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRE 94 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH----HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcH
Confidence 347899999999999999999887763 2333 3444443222 23333333321 0 00110 011111111
Q ss_pred H-------HHHHHHHHhc-CCcEEEEEeccCCc-----ccccccccCcCCCCCCcEEEEecCCh
Q 002655 252 E-------KALDISNILS-RKKFVLLLDDIWQP-----IDLTELGIPLQSLNVSSKVVFTTRSL 302 (896)
Q Consensus 252 ~-------~~~~l~~~l~-~k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~ 302 (896)
+ .....++.+. ++-=+||||.+-.. -+.+++...+.....+.-||+|-|+.
T Consensus 95 e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 95 RDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 1222334443 45569999998532 23344444444455677999999975
No 377
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.73 E-value=1.3 Score=47.19 Aligned_cols=49 Identities=29% Similarity=0.253 Sum_probs=34.1
Q ss_pred eEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 313 KIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 313 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
++++++++.+|+..++.-.....-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877644332222333445667777779998644
No 378
>PRK05439 pantothenate kinase; Provisional
Probab=94.72 E-value=0.25 Score=52.05 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 178 KNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999988765
No 379
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.047 Score=49.28 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=40.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
.+-|.|.|.||+||||+|.+++.... .-|+++|+-.....++...-+... ...-+.+.....|..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~----------~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~ 71 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG----------LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEP 71 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC----------CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHH
Confidence 45688999999999999999986541 236666543322222222211111 123345556666666
Q ss_pred HhcCCcE
Q 002655 260 ILSRKKF 266 (896)
Q Consensus 260 ~l~~k~~ 266 (896)
.+.+..+
T Consensus 72 ~m~~Gg~ 78 (176)
T KOG3347|consen 72 LMIEGGN 78 (176)
T ss_pred HHhcCCc
Confidence 6554433
No 380
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.69 E-value=0.16 Score=59.92 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=58.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc---ccccCHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES---WMDKSLEEKAL 255 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~ 255 (896)
..+++-|.|.+|+||||||.+++.... ..-..++|+.....++. ..++++|+..+. ....+.++...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~-----~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~ 128 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALE 128 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHH
Confidence 457889999999999999988766542 22356789987776663 367777765432 12334455555
Q ss_pred HHHHHhc-CCcEEEEEeccC
Q 002655 256 DISNILS-RKKFVLLLDDIW 274 (896)
Q Consensus 256 ~l~~~l~-~k~~LlVlDdv~ 274 (896)
.+...+. ++.-|||+|.+.
T Consensus 129 ~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 129 IADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHhhcCCCeEEEEcchh
Confidence 5555554 467789999985
No 381
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.68 E-value=0.024 Score=49.83 Aligned_cols=23 Identities=39% Similarity=0.728 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
|.|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988873
No 382
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.68 E-value=0.1 Score=54.15 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhC
Q 002655 160 VGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIG 239 (896)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 239 (896)
.|...+..+.+..+... ..+++.|.|..|.||||++..+.+... ..-..++.+.-........ + .+..
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i~-----~~~~~iitiEdp~E~~~~~----~-~q~~ 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSELN-----TPEKNIITVEDPVEYQIPG----I-NQVQ 129 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhhC-----CCCCeEEEECCCceecCCC----c-eEEE
Confidence 34443333333333333 346899999999999999998877652 1112333332222211110 0 1111
Q ss_pred CCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccc
Q 002655 240 LSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTE 281 (896)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 281 (896)
. ...........++..++..+=.++++++.+.+....
T Consensus 130 v-----~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 130 V-----NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred e-----CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 1 111112345567777888899999999998765443
No 383
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.084 Score=52.23 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 158 TVVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++-|-.+.++++.+...-. -...+-|..+|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 4556777788777654321 1245678899999999999999999986
No 384
>PRK04040 adenylate kinase; Provisional
Probab=94.64 E-value=0.029 Score=54.92 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 385
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.64 E-value=0.079 Score=50.77 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=39.6
Q ss_pred ccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC
Q 002655 159 VVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR 223 (896)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 223 (896)
+||....+.++++.+..-.....-|.|+|..|+||+.+|+.+.+.-. ..-...+-|+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~-----r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP-----RKNGPFISVNCAA 60 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST-----TTTS-EEEEETTT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh-----cccCCeEEEehhh
Confidence 47888888888887765433345667999999999999999988541 2223345555553
No 386
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.46 Score=47.10 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=39.5
Q ss_pred hhhccc--ccccchhHHHHHHHHHhhcc-----------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 151 VELALE--RTVVGQESMLDQVWRCITDQ-----------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 151 ~~~~~~--~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++.|.+ +++-|-+..++++++.+.-. -...+-+..+|++|.|||-+|++.+...
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 344443 34678899999998876321 1234668899999999999999987764
No 387
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.60 E-value=0.24 Score=56.60 Aligned_cols=99 Identities=17% Similarity=0.153 Sum_probs=59.0
Q ss_pred HHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccc--
Q 002655 168 QVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESW-- 245 (896)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-- 245 (896)
.+-+.|..+=..-.++.|.|++|+|||||+.+++.... ..-..++++.... +..++...+ +.+|......
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~-----~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC-----ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhh
Confidence 34444544433568999999999999999999988763 2234566665443 455665554 5565432110
Q ss_pred -----------cccCHHHHHHHHHHHhcC-CcEEEEEeccC
Q 002655 246 -----------MDKSLEEKALDISNILSR-KKFVLLLDDIW 274 (896)
Q Consensus 246 -----------~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 274 (896)
.....++....+.+.+.. +.-.+|+|.+.
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 112234555555555543 44567777763
No 388
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.60 E-value=0.071 Score=52.33 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCc
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSA 242 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 242 (896)
.|+|.|-||+||||+|........ .++. ..++-|+...++++ ..+||+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~---~~~~-~~VLvVDaDpd~nL-------~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL---SKGG-YNVLVVDADPDSNL-------PEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH---hcCC-ceEEEEeCCCCCCh-------HHhcCCCC
Confidence 689999999999999999666652 2222 34666666665553 45666654
No 389
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.59 E-value=0.082 Score=57.21 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=50.1
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
..++|+++.+..+...+..+ +-+.+.|.+|+|||+||+.++.... ...+++.+.......++....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~--------~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALG--------LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhC--------CCeEEEecCCCCCHHHhcCch
Confidence 44899988888888777765 6678999999999999999998862 334566777666666654433
No 390
>PRK06217 hypothetical protein; Validated
Probab=94.59 E-value=0.054 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.|.|.|++|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999876
No 391
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.59 E-value=0.073 Score=54.24 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.6
Q ss_pred EEcCCCCcHHHHHHHHHhhhh
Q 002655 185 LYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 185 I~G~gGiGKTtLa~~v~~~~~ 205 (896)
|+||+|+||||+++.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999874
No 392
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.61 Score=54.43 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=99.1
Q ss_pred ccccchhHHHHHH---HHHhhcc-------CCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 157 RTVVGQESMLDQV---WRCITDQ-------EKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 157 ~~~vGr~~~~~~l---~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
.++.|-|+..++| +++|..+ ..-++=+.++|++|.|||-||++++-... +=|+.++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg----------VPF~svSGS-- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSVSGS-- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC----------CceeeechH--
Confidence 3567887665555 5556543 22356788999999999999999988763 223344322
Q ss_pred HHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHh-cCCcEEEEEeccCCccc-----------------ccccccCcCC
Q 002655 227 LDKIQDAIGKRIGLSAESWMDKSLEEKALDISNIL-SRKKFVLLLDDIWQPID-----------------LTELGIPLQS 288 (896)
Q Consensus 227 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----------------~~~~~~~l~~ 288 (896)
+..+.+.. . ...++..+...- ...+.++.+|+++...- +..+...+..
T Consensus 379 ------EFvE~~~g-------~-~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 379 ------EFVEMFVG-------V-GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred ------HHHHHhcc-------c-chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 11111111 0 123333343333 34688999998764211 1122112211
Q ss_pred CCC--CcEEEEecCChhhhccC-----CCCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHH
Q 002655 289 LNV--SSKVVFTTRSLDVCGSM-----EADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLAL 361 (896)
Q Consensus 289 ~~~--gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal 361 (896)
... +--++-+|+..++.... ..++.+.++.-+.....++|.-++...... .+..++.+ |+...-|.+=|.
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 222 22344556666663321 235678888888888889998887654422 33345566 888888877543
No 393
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.58 E-value=0.11 Score=57.37 Aligned_cols=89 Identities=24% Similarity=0.259 Sum_probs=50.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHh-----CCCcccccccCHHH-
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRI-----GLSAESWMDKSLEE- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~- 252 (896)
....++|+|..|+|||||++.++... .....+++..-.+..++.++....+... +.-.. .+.+...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~------~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q--sd~~~~~r 235 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD------AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT--SDESPMMR 235 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC------CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc--CCCCHHHH
Confidence 34689999999999999999887653 2223455544333445555444333322 11110 1111211
Q ss_pred -----HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 253 -----KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 -----~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
....+.+++ +++.+|+++||+-.
T Consensus 236 ~~~~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 236 RLAPLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 122344444 57999999999854
No 394
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.58 E-value=0.15 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
+.+.|++|.||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998873
No 395
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.58 E-value=0.14 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.-.+++|.|..|.|||||++.++...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44789999999999999999997654
No 396
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.57 E-value=0.17 Score=50.93 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 397
>PRK05973 replicative DNA helicase; Provisional
Probab=94.56 E-value=0.35 Score=48.92 Aligned_cols=49 Identities=14% Similarity=0.104 Sum_probs=34.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 234 (896)
...++.|.|.+|+|||++|.++..... +. -..+++++... +..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a----~~-Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM----KS-GRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH----hc-CCeEEEEEEeC--CHHHHHHHH
Confidence 447899999999999999999877663 22 24566665544 355555554
No 398
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.54 E-value=0.067 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.516 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNK 203 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (896)
...+++|+|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999999876
No 399
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.52 E-value=0.026 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998775
No 400
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.79 Score=49.79 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=79.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNI 260 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 260 (896)
|--.++|+||.|||+++.++++... ||. .=...+...+-.+ +++.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~-------ydI-ydLeLt~v~~n~d---------------------------Lr~L 280 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN-------YDI-YDLELTEVKLDSD---------------------------LRHL 280 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC-------Cce-EEeeeccccCcHH---------------------------HHHH
Confidence 4567999999999999999999862 331 1122211111111 2333
Q ss_pred h--cCCcEEEEEeccCCcccc-----------c---------ccccCcC--CCCC-CcEEEE-ecCChhhh-----ccCC
Q 002655 261 L--SRKKFVLLLDDIWQPIDL-----------T---------ELGIPLQ--SLNV-SSKVVF-TTRSLDVC-----GSME 309 (896)
Q Consensus 261 l--~~k~~LlVlDdv~~~~~~-----------~---------~~~~~l~--~~~~-gs~Iiv-TtR~~~v~-----~~~~ 309 (896)
| ...+-+||+.|++...++ + .+...+. |... +-|||| ||-..+-. +.-.
T Consensus 281 L~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGR 360 (457)
T KOG0743|consen 281 LLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGR 360 (457)
T ss_pred HHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCc
Confidence 3 235677888887643111 1 1111111 1122 346654 55444332 1112
Q ss_pred CCceEEeccCChHHHHHHHHHhhCCcccCCCccHHHHHHHHHHHcCCchhHHHHHHHHh
Q 002655 310 ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAM 368 (896)
Q Consensus 310 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~PLal~~~g~~L 368 (896)
.+..+.++.=+.+.-..|+....+... . ..+..+|.+...|.-+.-..++..|
T Consensus 361 mDmhI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 361 MDMHIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred ceeEEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHH
Confidence 345788899999999999988886543 1 2335555555555555545555444
No 401
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.52 E-value=3.3 Score=45.04 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=40.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCc
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK--LDKIQDAIGKRIGLSA 242 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~ 242 (896)
.+.||-.+|.-|.||||-|-.+++.+. +..+ .+.-| ..+.+. ..+-++.++++.+++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk----k~~~-kvllV-aaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK----KKGK-KVLLV-AADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH----HcCC-ceEEE-ecccCChHHHHHHHHHHHHcCCce
Confidence 467899999999999999999999884 2222 23333 333333 3455788888887654
No 402
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.51 E-value=0.092 Score=57.79 Aligned_cols=91 Identities=25% Similarity=0.253 Sum_probs=51.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc----ccccCHHH--
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES----WMDKSLEE-- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-- 252 (896)
....++|+|..|+|||||++.++.... ....++...-.+.....++....+..-++.... ..+.+...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~------~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~ 212 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD------ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRR 212 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC------CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHH
Confidence 346899999999999999998877641 122333322233334555555554433322110 01222222
Q ss_pred ----HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 253 ----KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 ----~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
....+.+++ +++.+|+++||+-.
T Consensus 213 ~a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 213 QAAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122345555 57899999999854
No 403
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.51 E-value=0.26 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+|+|.|..|+||||+|+.+....
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998876654
No 404
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.49 E-value=0.088 Score=57.75 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCccc----ccccCHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK-LDKIQDAIGKRIGLSAES----WMDKSLEEK 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~ 253 (896)
....++|+|..|+|||||++.++... ..+.++.+-++.... ..++...++..-++...- ..+.+...+
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-------~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R 233 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-------TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMR 233 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-------CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHH
Confidence 34679999999999999999998653 225566666665543 455666654443222110 112222222
Q ss_pred ------HHHHHHHh--cCCcEEEEEeccCC
Q 002655 254 ------ALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 254 ------~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
...+.+++ +++.+|+++||+-.
T Consensus 234 ~~a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 234 LKGCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 22344555 57999999999854
No 405
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0044 Score=58.95 Aligned_cols=65 Identities=23% Similarity=0.405 Sum_probs=38.3
Q ss_pred ccCcccEEeeccCCCCCCC--ccc-ccCCCCcEEeEecCccccccccCCcCccccccccccccCcccceeeccCCcccc
Q 002655 749 GFRSLHTVFISDCSRLKEL--TWL-VFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLE 824 (896)
Q Consensus 749 ~l~~L~~L~L~~c~~l~~l--~~l-~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~L~ 824 (896)
.++.+++|.+.+|..+.+. .-+ +..|+|+.|+|++|+.+++-.- .....|++|+.|.|.+++...
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhhh
Confidence 4566666777777665552 112 2356777777777777665421 224556777777776665443
No 406
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.40 E-value=0.12 Score=57.57 Aligned_cols=93 Identities=22% Similarity=0.407 Sum_probs=59.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCccc----ccccCHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAES----WMDKSLEEK 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~ 253 (896)
.-.-++|.|.+|+|||||+..+.+... +.+-+.++++-++... ...++...+...-.+.... ..+.+...+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~----~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS----KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH----hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 346789999999999999999988873 2356777787776554 3556666665432221110 112222222
Q ss_pred ------HHHHHHHh---cCCcEEEEEeccCC
Q 002655 254 ------ALDISNIL---SRKKFVLLLDDIWQ 275 (896)
Q Consensus 254 ------~~~l~~~l---~~k~~LlVlDdv~~ 275 (896)
...+.+++ .++.+||++||+-.
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 23355665 37999999999854
No 407
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.40 E-value=0.08 Score=63.52 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+.+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 358999999888877766433344678899999999999999997764
No 408
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.034 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..+|+|-||-|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999987
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.38 E-value=0.037 Score=55.50 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNK 203 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (896)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 410
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.37 E-value=0.028 Score=54.07 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=32.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK 226 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~ 226 (896)
..++.+.|+.|+|||.+|+.++.... . +.....+-++++....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~---~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF---V-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-----SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc---c-CCccchHHHhhhcccc
Confidence 56788999999999999999998872 1 3455667777665444
No 411
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.36 E-value=0.16 Score=50.27 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCC--------CCEEEEEEeCCCCCHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHH--------FDVVIWGVVSREPKLDKIQDAI 234 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~--------f~~~~wv~~s~~~~~~~~~~~i 234 (896)
.++.|.|++|+||||++..++.... .... -..++|+..... ...+.+.+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~---~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl 89 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA---TGRPFLGELPPRPGRVLYISLEDS--ESQIARRL 89 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH---T---TT---------EEEEESSS---HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH---hCCccCCcccccCceEEEEeccCC--HHHHHHHH
Confidence 5889999999999999999988874 2222 237788876655 33444443
No 412
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.33 E-value=0.04 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 413
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.02 Score=33.72 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=13.4
Q ss_pred CccEEecccccccccCCccccC
Q 002655 561 SLKVLNLGFNIFLNKLPSGLSS 582 (896)
Q Consensus 561 ~L~~L~L~~~~~~~~lp~~~~~ 582 (896)
+|++|+|++| .++.+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4667777777 56666666554
No 414
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.25 Score=48.49 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEeccCCcccccccc------cCcCCCCCCcEEEEecCChhhhccCCCCceEE
Q 002655 251 EEKALDISNILSRKKFVLLLDDIWQPIDLTELG------IPLQSLNVSSKVVFTTRSLDVCGSMEADEKIE 315 (896)
Q Consensus 251 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~------~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~ 315 (896)
+.....+.+.+--++-+.|||..++--|.+.+. ..+. ..|+-+++.|..+.++.....+.++-
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 334455666666788899999998865555442 1222 34666888888888888776665553
No 415
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.27 E-value=0.065 Score=56.53 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=41.9
Q ss_pred ccccchhHHHHHHHHHhhcc----CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQ----EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..|+|.++.++++++.+... +..-+++.++|+.|.||||||+.+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999998753 3356899999999999999999998876
No 416
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.26 E-value=0.13 Score=46.84 Aligned_cols=115 Identities=23% Similarity=0.396 Sum_probs=59.2
Q ss_pred CcccceeeeccccCccccC--CCCCCCCCcEEEcccCccccccchhhccCCCccEEecccccccccCC-ccccCCCcCcE
Q 002655 512 DWEGFKRISLMENNITSLS--AIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLP-SGLSSLISLEH 588 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~ 588 (896)
...+++.+.+.. .+..+. .+..+++|+.+.+..+ +..++...|.+++.|+.+.+.++ +..++ ..+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccc
Confidence 334667777653 455553 3678888998888774 77888888888888999988653 33333 45667888988
Q ss_pred EeccCCCccccchh-hhcCCCCcEEeccccccccccccccCCCCcc
Q 002655 589 LDLSFTVIRELPEE-MKALVNLRYLNLEYVYLNRLPLQLLCNFTKL 633 (896)
Q Consensus 589 L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~~i~~l~~L 633 (896)
+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 888765 6666553 4554 888887765 4555666666666655
No 417
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.21 E-value=0.046 Score=59.24 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=45.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhh-hhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCI-EQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
..+-+.|||..|.|||.|+-.+|+.... .+.+-||+.. +.++.+.+-+.-+ .......+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~F----------m~~vh~~l~~~~~----------~~~~l~~v 120 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEF----------MLDVHSRLHQLRG----------QDDPLPQV 120 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHH----------HHHHHHHHHHHhC----------CCccHHHH
Confidence 5678999999999999999999998742 1112233210 1223333322111 11223344
Q ss_pred HHHhcCCcEEEEEeccC
Q 002655 258 SNILSRKKFVLLLDDIW 274 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv~ 274 (896)
.+.+.++..||.||++.
T Consensus 121 a~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 121 ADELAKESRLLCFDEFQ 137 (362)
T ss_pred HHHHHhcCCEEEEeeee
Confidence 55667777899999964
No 418
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.19 E-value=0.073 Score=55.47 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=48.1
Q ss_pred HHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccccc
Q 002655 167 DQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWM 246 (896)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 246 (896)
..+++.+... .+-+.++|+.|+|||++++....... ...| .+.-++.+...+...+++.+-..+.......
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l~----~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~- 93 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSLD----SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV- 93 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCST----TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE-
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccCC----cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC-
Confidence 3445555444 25668999999999999999876652 2222 2444556655444444433222221100000
Q ss_pred ccCHHHHHHHHHHHhcCCcEEEEEeccCC
Q 002655 247 DKSLEEKALDISNILSRKKFVLLLDDIWQ 275 (896)
Q Consensus 247 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 275 (896)
..--.+|+.++.+||+.-
T Consensus 94 -----------~gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 94 -----------YGPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp -----------EEEESSSEEEEEEETTT-
T ss_pred -----------CCCCCCcEEEEEecccCC
Confidence 000146888999999853
No 419
>PRK05922 type III secretion system ATPase; Validated
Probab=94.17 E-value=0.15 Score=56.09 Aligned_cols=90 Identities=11% Similarity=0.264 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCccc----ccccCHHH-
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSAES----WMDKSLEE- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 252 (896)
....++|+|..|+|||||++.+.... . .+..+.+.++.. ....+.+.+..........- ..+.+...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~------~-~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r 228 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS------K-STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTK 228 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC------C-CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHH
Confidence 34678999999999999999998764 1 233333334333 23344554444333221110 01111211
Q ss_pred -----HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 253 -----KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 -----~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
....+.+++ +++++|+++||+-.
T Consensus 229 ~~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 229 VIAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 123345555 57999999999854
No 420
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.17 E-value=0.097 Score=52.14 Aligned_cols=89 Identities=25% Similarity=0.451 Sum_probs=53.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcc----cccccCHHHH-
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAE----SWMDKSLEEK- 253 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~- 253 (896)
-.-++|.|.+|+|||+|+..+.+... -+.++++.+++.. ...++.+.+...-..... ...++.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~-------~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~ 87 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD-------ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARY 87 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT-------TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc-------ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHh
Confidence 36789999999999999999988752 3455788777653 455566666433111110 0012222221
Q ss_pred -----HHHHHHHh--cCCcEEEEEeccCC
Q 002655 254 -----ALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 254 -----~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
.-.+.+++ +++.+|+++||+..
T Consensus 88 ~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 88 RAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 11223333 68999999999843
No 421
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.15 E-value=0.21 Score=53.10 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=52.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeC-CCCCHHHHHHHHHHHhCCCccc----ccccCHHH-
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVS-REPKLDKIQDAIGKRIGLSAES----WMDKSLEE- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 252 (896)
....++|+|..|.|||||++.+..... -+..+..-+. +..+..++.......-++.... ..+.+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~-------~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r 140 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT-------ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLR 140 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC-------CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHH
Confidence 346889999999999999999887652 2333344443 3345556665555543322110 01222221
Q ss_pred -----HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 253 -----KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 -----~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
....+.+++ +++.+||++||+-.
T Consensus 141 ~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 141 VKAAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 122234444 57999999999754
No 422
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.038 Score=51.57 Aligned_cols=20 Identities=50% Similarity=0.742 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 002655 182 IIGLYGTGGVGKTTLLKQVN 201 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~ 201 (896)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 423
>PRK08149 ATP synthase SpaL; Validated
Probab=94.15 E-value=0.16 Score=55.82 Aligned_cols=90 Identities=18% Similarity=0.308 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCccc----ccccCHHH-
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSAES----WMDKSLEE- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 252 (896)
....++|+|..|+|||||+..++... ..+.++...+... .+..++.............. ..+.+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-------~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r 222 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-------EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDR 222 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-------CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHH
Confidence 44689999999999999999988754 2233334444333 34556666665543321110 01122211
Q ss_pred -----HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 253 -----KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 -----~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
....+.+++ +++++||++||+-.
T Consensus 223 ~~a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 223 CNAALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HhHHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 223344444 57999999999854
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.14 E-value=0.27 Score=55.13 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=38.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCc
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSA 242 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 242 (896)
.+|++++|+.|+||||.+..++.... .+..-..+..+..... ....+-++..++.++++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV---MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH---HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 47999999999999999999988763 1221224555554321 123344566666666543
No 425
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.10 E-value=0.035 Score=55.23 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997764
No 426
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.10 E-value=0.037 Score=53.82 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 427
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.08 E-value=0.051 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 428
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.35 Score=53.26 Aligned_cols=61 Identities=26% Similarity=0.285 Sum_probs=37.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCc
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSRE-PKLDKIQDAIGKRIGLSA 242 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 242 (896)
...+++++|+.|+||||++..++.... .....+.+..+..... ....+-+..+++.++++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAV---IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 347999999999999999998877642 1122234444443221 223344556666666654
No 429
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.04 E-value=0.045 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.+++|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998775
No 430
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.02 E-value=0.084 Score=51.59 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=32.1
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++++|-+..+..+.-.... .+-+.++|++|+|||++|+.+..-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3578888887777655553 3678899999999999999987654
No 431
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.00 E-value=0.3 Score=50.65 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCC
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSR 223 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~ 223 (896)
...++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-----~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-----SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-----hCCCcEEEEEecC
Confidence 457999999999999999999876652 1234677887754
No 432
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.00 E-value=0.32 Score=53.92 Aligned_cols=93 Identities=22% Similarity=0.431 Sum_probs=58.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcc----cccccCHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAE----SWMDKSLEEK 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~ 253 (896)
.-.-++|.|.+|+|||||+..+..... ..+-+.++++-++... ...++...+...-.+... ...+.+...+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~----~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r 218 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA----KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGAR 218 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH----hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 346789999999999999999877763 2222467777776554 356666666654322111 0112222222
Q ss_pred ------HHHHHHHh---cCCcEEEEEeccCC
Q 002655 254 ------ALDISNIL---SRKKFVLLLDDIWQ 275 (896)
Q Consensus 254 ------~~~l~~~l---~~k~~LlVlDdv~~ 275 (896)
...+.+++ +++.+||++|++-.
T Consensus 219 ~~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 219 LRVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 23355666 67999999999854
No 433
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.99 E-value=0.11 Score=59.98 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=36.9
Q ss_pred cccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 158 TVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999998776544 34566899999999999999997653
No 434
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.99 E-value=0.18 Score=52.60 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=41.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 002655 178 KNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGL 240 (896)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 240 (896)
+.-+++.|+|.+|+|||++|.++..... .....++||..... ..++.+...+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~-----~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA-----REGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH-----hcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 3568999999999999999999988874 44788999987653 5555555543 543
No 435
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.98 E-value=0.16 Score=55.98 Aligned_cols=90 Identities=20% Similarity=0.326 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCcc----cccccCHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK-LDKIQDAIGKRIGLSAE----SWMDKSLEEK 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~~~~ 253 (896)
....++|+|..|+|||||++.+++... .+.++++-++.... ..++....+..-++... ...+.+...+
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~-------~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r 229 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD-------ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMR 229 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHH
Confidence 346889999999999999999887642 24555566655443 44555444443222111 0112222222
Q ss_pred ------HHHHHHHh--cCCcEEEEEeccCC
Q 002655 254 ------ALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 254 ------~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
...+.+++ +++.+|+++||+-.
T Consensus 230 ~~a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 230 RQAAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 22344555 57999999999854
No 436
>PRK13949 shikimate kinase; Provisional
Probab=93.96 E-value=0.045 Score=52.65 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+-|.|+|++|+||||+++.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999998876
No 437
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.95 E-value=0.42 Score=56.42 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC--HHHHHHHHHHHhCCCcccccccCHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK--LDKIQDAIGKRIGLSAESWMDKSLEEKALDI 257 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 257 (896)
.++++++|+.|+||||.+..++.... .......+..+... .+. ..+-++...+.++++.. ...+..+....+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al 258 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV---AREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFAL 258 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH---HHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHH
Confidence 47999999999999999999887762 11212345555443 333 44556777777776542 223455544444
Q ss_pred HHHhcCCcEEEEEeccC
Q 002655 258 SNILSRKKFVLLLDDIW 274 (896)
Q Consensus 258 ~~~l~~k~~LlVlDdv~ 274 (896)
. .++++ =+|++|=.-
T Consensus 259 ~-~~~~~-D~VLIDTAG 273 (767)
T PRK14723 259 A-ALGDK-HLVLIDTVG 273 (767)
T ss_pred H-HhcCC-CEEEEeCCC
Confidence 3 33444 366777664
No 438
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.93 E-value=0.043 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 439
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.92 E-value=0.51 Score=47.10 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+++|+|+.|.|||||++.++...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 45799999999999999999998765
No 440
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.009 Score=56.92 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=49.8
Q ss_pred hhhccccceEEeccCCcee-eeeccccccccccccccCcccEEeeccCCCCCC--CcccccCCCCcEEeEecCccccc
Q 002655 715 LAYMKHLKNFLIQNCAFEE-LKIENAVEIQNLVQRGFRSLHTVFISDCSRLKE--LTWLVFAPNLKNIDVQNCNNMEE 789 (896)
Q Consensus 715 l~~~~~L~~L~i~~~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~ 789 (896)
+..++.++.|.+.+|.... ..++.+. ...++|+.|+|++|+++++ +-++..+++|+.|.|.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 4456677777777776654 2233332 2689999999999999998 55789999999999988655443
No 441
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.86 E-value=0.091 Score=55.68 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=69.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhh-hhcCCCC-EEEEEE-------e----CCCCCHHHHHHH-------------
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIE-QRQHHFD-VVIWGV-------V----SREPKLDKIQDA------------- 233 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~~~f~-~~~wv~-------~----s~~~~~~~~~~~------------- 233 (896)
..+++|+|..|+||||+.+.+....... ......+ +.+-+. + ...++-..++.+
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 4689999999999999999987665200 0000011 111111 0 111121223333
Q ss_pred HHHHhCCCcccc-----cc-cCHHHHHHHHHHHhcCCcEEEEEeccCCccc-cccc--ccCcC--CCCCCcEEEEecCCh
Q 002655 234 IGKRIGLSAESW-----MD-KSLEEKALDISNILSRKKFVLLLDDIWQPID-LTEL--GIPLQ--SLNVSSKVVFTTRSL 302 (896)
Q Consensus 234 i~~~l~~~~~~~-----~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~--~~~l~--~~~~gs~IivTtR~~ 302 (896)
|+...|+.+... .. .+-+.-..+|.+.+..+.-+++.|.....-| .... ...+. ....|+.+++.|+++
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH
Confidence 333334332211 11 1122234567888889989999998765321 1111 11111 112466777777778
Q ss_pred hhhccCCCCceEE
Q 002655 303 DVCGSMEADEKIE 315 (896)
Q Consensus 303 ~v~~~~~~~~~~~ 315 (896)
++.+.+..+..+-
T Consensus 569 Ev~~AL~PD~li~ 581 (593)
T COG2401 569 EVGNALRPDTLIL 581 (593)
T ss_pred HHHhccCCceeEE
Confidence 8877776554443
No 442
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.44 Score=54.37 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=35.5
Q ss_pred ccccchhHHHHH---HHHHhhccC-------CCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQ---VWRCITDQE-------KNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.++.|.|+.+++ +++.|.+.. .-++-+..+|++|.|||.||++++...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 456787766555 555666542 234668899999999999999999886
No 443
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.85 E-value=0.056 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998775
No 444
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.85 E-value=0.094 Score=55.45 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=35.6
Q ss_pred cccccchhHHHHH---HHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 156 ERTVVGQESMLDQ---VWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 156 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
...+||.....+. +++++....-..+.|.+.|++|.|||+||..++....
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 4568998766554 4566666533468899999999999999999999874
No 445
>PRK14530 adenylate kinase; Provisional
Probab=93.84 E-value=0.051 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998776
No 446
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.84 E-value=0.08 Score=56.61 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=36.6
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+.++|.+..++.+.-.+... +..-+.+.|.+|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 45799999988877655433 34568899999999999999997765
No 447
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.83 E-value=0.085 Score=50.50 Aligned_cols=23 Identities=52% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
|.|.|.+|+||||+++.+++...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998873
No 448
>PRK13947 shikimate kinase; Provisional
Probab=93.82 E-value=0.049 Score=52.67 Aligned_cols=23 Identities=43% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 449
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.81 E-value=0.14 Score=56.68 Aligned_cols=93 Identities=24% Similarity=0.429 Sum_probs=58.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCccc----ccccCHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPK-LDKIQDAIGKRIGLSAES----WMDKSLEEK 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~ 253 (896)
.-.-++|.|.+|+|||+|+..+..... +.+-+.++++-++.... ..++...+...-.+.... ..+.+...+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~----~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r 212 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV----GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGAR 212 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH----hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHH
Confidence 346789999999999999999888752 23347888888876653 456666665432221110 112222222
Q ss_pred ------HHHHHHHhc---CCcEEEEEeccCC
Q 002655 254 ------ALDISNILS---RKKFVLLLDDIWQ 275 (896)
Q Consensus 254 ------~~~l~~~l~---~k~~LlVlDdv~~ 275 (896)
...+.++++ ++.+|+++||+-.
T Consensus 213 ~~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 213 FRVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 233556654 5899999999854
No 450
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.78 E-value=0.064 Score=51.20 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 467999999999999999999998873
No 451
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.77 E-value=0.093 Score=56.28 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=37.5
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..+||.+..+..++-.+.+. +..-+.|.|.+|+||||+++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35799999998887666655 45667799999999999999997665
No 452
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.77 E-value=0.37 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+..|+|+||+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 453
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.72 E-value=0.048 Score=51.43 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999997764
No 454
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.71 E-value=0.044 Score=50.76 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=32.8
Q ss_pred cchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 160 VGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
||+...++++.+.+..-......|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 567777777777766533345677899999999999999988765
No 455
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.67 E-value=0.083 Score=56.64 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=38.7
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+.+||-++.+..+...+.+. +.+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999888888777666 56667799999999999999997776
No 456
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.62 E-value=0.054 Score=52.67 Aligned_cols=23 Identities=39% Similarity=0.817 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998886
No 457
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.61 E-value=0.24 Score=54.68 Aligned_cols=93 Identities=20% Similarity=0.427 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCcc----cccccCHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAE----SWMDKSLEEK 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~ 253 (896)
.-.-++|.|.+|+|||||+..+..... ..+-..++++-++... ...+++..+...-.+... ...+.+...+
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~----~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R 217 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA----KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH----hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 346789999999999999999887763 2233467777776554 456677766543222110 0122222222
Q ss_pred ------HHHHHHHh---cCCcEEEEEeccCC
Q 002655 254 ------ALDISNIL---SRKKFVLLLDDIWQ 275 (896)
Q Consensus 254 ------~~~l~~~l---~~k~~LlVlDdv~~ 275 (896)
...+.+++ +++.+||++||+-.
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 218 MRVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 23355666 46899999999854
No 458
>PF13245 AAA_19: Part of AAA domain
Probab=93.61 E-value=0.16 Score=41.18 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=18.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.+++.|.|++|.|||+++.......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3678889999999995555444443
No 459
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.55 E-value=0.26 Score=50.49 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=68.7
Q ss_pred ccccchhHHHHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGK 236 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 236 (896)
+.|+|-... .++..++.......+.+.|+|+.|+|||+-++.+++.. ...+-+..+..+....+...+..
T Consensus 72 ~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~---------p~~~l~~~~p~~~a~~~i~~i~~ 141 (297)
T COG2842 72 PDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN---------PNALLIEADPSYTALVLILIICA 141 (297)
T ss_pred ccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC---------ccceeecCChhhHHHHHHHHHHH
Confidence 445655432 23334443332234588899999999999999998765 22333455666666666666665
Q ss_pred HhCCCcccccccCHHHHHHHHHHHhcCCcEEEEEeccCCc
Q 002655 237 RIGLSAESWMDKSLEEKALDISNILSRKKFVLLLDDIWQP 276 (896)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 276 (896)
..... ......+....+...+.+..-+++.|+.+..
T Consensus 142 ~~~~~----~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L 177 (297)
T COG2842 142 AAFGA----TDGTINDLTERLMIRLRDTVRLIIVDEADRL 177 (297)
T ss_pred HHhcc----cchhHHHHHHHHHHHHccCcceeeeehhhcc
Confidence 54433 3345566677777778889999999998763
No 460
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.55 E-value=0.089 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~ 204 (896)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 461
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.52 E-value=0.33 Score=47.49 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...++.|.|.+|.||||+|+.+....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 462
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.50 E-value=0.23 Score=50.98 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCccc----ccccCHHHH-
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAES----WMDKSLEEK- 253 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~- 253 (896)
-.-++|.|..|+|||+|+..+.++.... .+.+-+.++++-+++.. +..++...+.+.-.+.... ..+.+.-.+
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~-~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVV-GEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhcc-ccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4568999999999999999988764100 01234678888887765 3566666665542222110 011222211
Q ss_pred -----HHHHHHHhc---CCcEEEEEeccCC
Q 002655 254 -----ALDISNILS---RKKFVLLLDDIWQ 275 (896)
Q Consensus 254 -----~~~l~~~l~---~k~~LlVlDdv~~ 275 (896)
...+.++++ ++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 233455552 6899999999855
No 463
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.49 E-value=0.54 Score=49.35 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=37.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKR 237 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 237 (896)
...++.|.|.+|+||||++.+++.... ...-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~----~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI----TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 346888999999999999999987763 22235688887655 345555555443
No 464
>PRK15453 phosphoribulokinase; Provisional
Probab=93.46 E-value=0.43 Score=49.08 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
+..+|+|.|.+|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999998766
No 465
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.43 E-value=0.48 Score=56.15 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
....|+|+|..|+|||||++.+..-+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999987765
No 466
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.42 E-value=0.14 Score=54.24 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=35.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
.+++.+.|.||+||||+|-+.+-... ... ..++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA----~~g-~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA----ESG-KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH----HcC-CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999776664 222 45777776665555555443
No 467
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.42 E-value=0.38 Score=56.00 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+++|+|+.|.|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999998765
No 468
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.40 E-value=0.22 Score=53.15 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=29.9
Q ss_pred HHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 167 DQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
..+.+.+.....+..+|+|.|.+|+|||||+..+.....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555544334678999999999999999999888773
No 469
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.36 E-value=0.067 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~ 204 (896)
|.|+|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998775
No 470
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.36 E-value=0.27 Score=56.05 Aligned_cols=137 Identities=20% Similarity=0.153 Sum_probs=74.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhh--hhc-CCCCEEEEEEeCC---------------CC-C-HHHHHHHHHHHh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIE--QRQ-HHFDVVIWGVVSR---------------EP-K-LDKIQDAIGKRI 238 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-~~f~~~~wv~~s~---------------~~-~-~~~~~~~i~~~l 238 (896)
....|+|+|+.|+|||||.+.+....... .+. +.--.+.++.-.. .+ + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 44679999999999999999997665211 000 1111122222111 01 1 134455556666
Q ss_pred CCCcccc----cccC-HHHHHHHHHHHhcCCcEEEEEeccCCccccc---ccccCcCCCCCCcEEEEecCChhhhccCCC
Q 002655 239 GLSAESW----MDKS-LEEKALDISNILSRKKFVLLLDDIWQPIDLT---ELGIPLQSLNVSSKVVFTTRSLDVCGSMEA 310 (896)
Q Consensus 239 ~~~~~~~----~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~---~~~~~l~~~~~gs~IivTtR~~~v~~~~~~ 310 (896)
+.+.+.. ..-+ -+...-.+...+-.++-+||||.--+.-|.+ .+...+... .| .||+.|-++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-
Confidence 6554321 1112 2223344666777899999999876654333 222333222 34 4888888887766553
Q ss_pred CceEEecc
Q 002655 311 DEKIEVKY 318 (896)
Q Consensus 311 ~~~~~l~~ 318 (896)
.+.+.+.+
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
Confidence 44555543
No 471
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.36 E-value=0.064 Score=52.35 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998764
No 472
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.33 E-value=0.094 Score=59.26 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=27.2
Q ss_pred HHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 170 WRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 170 ~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
++.+.....+..+|+|.|+.|.||||||+.+....
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 34444444467899999999999999999997654
No 473
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.32 E-value=0.27 Score=47.18 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccc-cCHHHHHHHHHH
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMD-KSLEEKALDISN 259 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~ 259 (896)
.++.|.|.+|+||||+|..+..... . .++++.....+ ..+....|..........+.. ....++...+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~-----~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG-----L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRA 72 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC-----C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHh
Confidence 3689999999999999999976642 1 23344433333 334555554433222222211 111223333443
Q ss_pred HhcCCcEEEEEecc
Q 002655 260 ILSRKKFVLLLDDI 273 (896)
Q Consensus 260 ~l~~k~~LlVlDdv 273 (896)
...+ .-++++|.+
T Consensus 73 ~~~~-~~~VlID~L 85 (170)
T PRK05800 73 DAAP-GRCVLVDCL 85 (170)
T ss_pred hcCC-CCEEEehhH
Confidence 3333 337888886
No 474
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.32 E-value=0.34 Score=53.85 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=53.8
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHhhhhhh--hhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhC-CCccc----ccccCHH
Q 002655 180 RGIIGLYGTGGVGKTTLL-KQVNNKFCIE--QRQHHFDVVIWGVVSREPKLDKIQDAIGKRIG-LSAES----WMDKSLE 251 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~--~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~----~~~~~~~ 251 (896)
-.-++|.|..|+|||+|| ..+.+..... .....-+.++++-+++..+...-+...+++-+ +.... ..+++..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 457899999999999997 5566664100 01123457788888877643332444444433 21110 0112121
Q ss_pred H------HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 252 E------KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 252 ~------~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
. ....+.+++ +++.+|+|+||+..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 122234444 57999999999854
No 475
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.31 E-value=0.085 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+|+|+|++|+||||+|+.+....
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998876
No 476
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.30 E-value=0.12 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNKFC 205 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (896)
|++|+|+.|+||||++.++....+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999873
No 477
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.29 E-value=0.1 Score=52.14 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=38.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEE-------EEeCCCCCHHHH--HHHHHHHhCCCc
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIW-------GVVSREPKLDKI--QDAIGKRIGLSA 242 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~w-------v~~s~~~~~~~~--~~~i~~~l~~~~ 242 (896)
....|.++||+|+||||..+.++.+.+ .+.....++= +...-+.++++. ++...++.++.+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~---~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH---AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh---hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 456788899999999999999988875 2222222221 112233345443 567777776654
No 478
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.28 E-value=0.27 Score=56.10 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCcEEEEEeccCCccccccc---ccCcCCCCCCcEEEEecCChhhhccC
Q 002655 252 EKALDISNILSRKKFVLLLDDIWQPIDLTEL---GIPLQSLNVSSKVVFTTRSLDVCGSM 308 (896)
Q Consensus 252 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~IivTtR~~~v~~~~ 308 (896)
.....|.+.|-.++=+|+||.--+.-|.+.+ ...+. ..+| -+||.|-++.....+
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~-~~~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK-RYPG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCC-cEEEEeCCHHHHHHH
Confidence 3455677778888999999998765443322 22232 3345 688889888776554
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.28 E-value=0.08 Score=51.94 Aligned_cols=93 Identities=18% Similarity=0.077 Sum_probs=48.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHH
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISN 259 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 259 (896)
...++|+|..|.||||+++.+..... .. ..++-+.-....... .... -++..................+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~-----~~-~~~i~ied~~E~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP-----PD-ERIITIEDTAELQLP--HPNW-VRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC-----CC-CCEEEECCccccCCC--CCCE-EEEEEecCCCCCCCccCHHHHHHH
Confidence 47899999999999999999887652 11 122222111000000 0000 000000000001112234455666
Q ss_pred HhcCCcEEEEEeccCCcccccc
Q 002655 260 ILSRKKFVLLLDDIWQPIDLTE 281 (896)
Q Consensus 260 ~l~~k~~LlVlDdv~~~~~~~~ 281 (896)
.++..+=.++++.+.+.+.+..
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~ 117 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDL 117 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHH
Confidence 7777888899999988766543
No 480
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.27 E-value=0.35 Score=49.68 Aligned_cols=90 Identities=11% Similarity=0.174 Sum_probs=51.3
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHhhhhhhhhcCCCCEE-EEEEeCCCC-CHHHHHHHHHHHhCCCcc----cccccCHHH
Q 002655 180 RGIIGLYGTGGVGKTTLL-KQVNNKFCIEQRQHHFDVV-IWGVVSREP-KLDKIQDAIGKRIGLSAE----SWMDKSLEE 252 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~ 252 (896)
-.-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.... ...++.+.+.+.-..... ...+++...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-------~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~ 141 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-------GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPL 141 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-------CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhH
Confidence 467899999999999996 5555432 23444 556665553 456666666543222110 001222222
Q ss_pred H------HHHHHHHh--cCCcEEEEEeccCCc
Q 002655 253 K------ALDISNIL--SRKKFVLLLDDIWQP 276 (896)
Q Consensus 253 ~------~~~l~~~l--~~k~~LlVlDdv~~~ 276 (896)
+ .-.+.+++ +++.+||++||+-..
T Consensus 142 r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 142 QYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1 22233433 578999999998653
No 481
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.26 E-value=0.08 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 482
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.25 E-value=0.15 Score=56.39 Aligned_cols=49 Identities=27% Similarity=0.361 Sum_probs=36.6
Q ss_pred cccccchhHHHHHHHHHhhcc--------------CCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 156 ERTVVGQESMLDQVWRCITDQ--------------EKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~--------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...++|.+..++.+...+... ....+.+.++|++|+|||++|+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 456899999988886554210 0123568899999999999999998765
No 483
>PRK14527 adenylate kinase; Provisional
Probab=93.23 E-value=0.083 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 484
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.23 E-value=0.078 Score=48.98 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998876553
No 485
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.21 E-value=0.26 Score=48.14 Aligned_cols=120 Identities=19% Similarity=0.102 Sum_probs=62.7
Q ss_pred HHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCC--EEEEEEeCCCCC---HHHHHHHHHHHhCCCcc
Q 002655 169 VWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFD--VVIWGVVSREPK---LDKIQDAIGKRIGLSAE 243 (896)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~--~~~wv~~s~~~~---~~~~~~~i~~~l~~~~~ 243 (896)
++..|.+. +..-..|.|++|+|||||.+.+++-.++. ...|- .+.-++-+.... ...-+..+.....+-
T Consensus 128 li~~ly~~--g~lntLiigpP~~GKTTlLRdiaR~~s~g--~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVl-- 201 (308)
T COG3854 128 LIKDLYQN--GWLNTLIIGPPQVGKTTLLRDIARLLSDG--INQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVL-- 201 (308)
T ss_pred HHHHHHhc--CceeeEEecCCCCChHHHHHHHHHHhhcc--ccccCCceEEEEeccchhhccccCCchhhhhhhhhhc--
Confidence 55666655 45557899999999999999998887522 12442 233332211100 000011111111110
Q ss_pred cccccCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCcCCCCCCcEEEEecCC
Q 002655 244 SWMDKSLEEKALDISNILSRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRS 301 (896)
Q Consensus 244 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~ 301 (896)
..... ..-.+...-...+=++|.|.+-..++-.++...+ +.|-+++.|..-
T Consensus 202 --d~cpk--~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 202 --DPCPK--AEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred --ccchH--HHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 01111 1111122223467799999998877766654443 457788877654
No 486
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.20 E-value=0.081 Score=52.91 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998765
No 487
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.18 E-value=0.078 Score=47.55 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~ 204 (896)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998776
No 488
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.18 E-value=0.04 Score=54.01 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 002655 182 IIGLYGTGGVGKTTLLKQVNNK 203 (896)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (896)
++.|+|+.|.||||+.+.+.-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999998733
No 489
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.18 E-value=0.087 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...|.|+|+.|.||||+|+.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999998875
No 490
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.16 E-value=0.36 Score=56.75 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
....++|+|+.|.|||||++.+....
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998765
No 491
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.16 E-value=1.7 Score=45.26 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=28.7
Q ss_pred HHHHHHHhhccCCCccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 166 LDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
-+++...+..+. -.....++|+.|+||+++|..++...
T Consensus 6 ~~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 6 WEALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 455666666551 34567799999999999999988776
No 492
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.15 E-value=0.47 Score=52.81 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=49.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcc----cccccCHHH--
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAE----SWMDKSLEE-- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~-- 252 (896)
....++|+|..|+|||||++.+..... .-..++++.--+..+..++....+..-+.... ...+.+...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~------~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~ 230 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTS------ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRI 230 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccC------CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHH
Confidence 457899999999999999998877642 12244444333333444443332211111000 001111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 253 ----KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 ----~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
....+.+++ +++.+||++||+-.
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 123344555 57999999999843
No 493
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.10 E-value=0.28 Score=54.33 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=51.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCCccc----ccccCHHH-
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREP-KLDKIQDAIGKRIGLSAES----WMDKSLEE- 252 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 252 (896)
....++|+|..|.|||||++.+.... ..+.++...+.... +..++...+...-++.... ..+.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-------~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r 239 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-------EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMR 239 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-------CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHH
Confidence 34679999999999999999887643 22344444444332 3455555555443332110 01111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEeccCC
Q 002655 253 -----KALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 253 -----~~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
....+.+++ +++++||++||+-.
T Consensus 240 ~~a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 240 LRAAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 122344554 57999999999854
No 494
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.10 E-value=0.045 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhh
Q 002655 181 GIIGLYGTGGVGKTTLLKQVNNK 203 (896)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (896)
.+++|+|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999843
No 495
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.10 E-value=0.23 Score=52.94 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhh
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKF 204 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (896)
...+++|+|+.|.|||||.+.+....
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999998764
No 496
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.09 E-value=0.13 Score=50.22 Aligned_cols=36 Identities=36% Similarity=0.477 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEE
Q 002655 180 RGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGV 220 (896)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~ 220 (896)
.+++.|+|+.|+|||||++.+..... ..|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~-----~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP-----DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST-----TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc-----cccccceeec
Confidence 47899999999999999999988762 5675444443
No 497
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.08 E-value=0.59 Score=47.41 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=34.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHH
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 233 (896)
...++.|.|.+|+|||++|.+++.... ..=..++|++... +..++...
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~-----~~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGL-----KNGEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEEECCC--CHHHHHHH
Confidence 457899999999999999999877652 2235677877655 34444444
No 498
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.08 E-value=0.24 Score=54.84 Aligned_cols=91 Identities=21% Similarity=0.254 Sum_probs=53.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCccc----ccccCHHHH-
Q 002655 179 NRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAES----WMDKSLEEK- 253 (896)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~- 253 (896)
....++|.|..|+|||||++.++.... .-..+++..-.+.....++.+.+...-++.... ..+.+...+
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~------~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~ 235 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQ------CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERA 235 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC------CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHH
Confidence 457899999999999999999987642 112444443334445556666665443322110 011222221
Q ss_pred -----HHHHHHHh--cCCcEEEEEeccCC
Q 002655 254 -----ALDISNIL--SRKKFVLLLDDIWQ 275 (896)
Q Consensus 254 -----~~~l~~~l--~~k~~LlVlDdv~~ 275 (896)
...+.+++ +++.+|+++||+-.
T Consensus 236 ~a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 236 KAAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 22344555 57899999999854
No 499
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.06 E-value=0.5 Score=45.29 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=45.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhhhhhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCcccccccCHHHHHHHHHHHhc
Q 002655 183 IGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDVVIWGVVSREPKLDKIQDAIGKRIGLSAESWMDKSLEEKALDISNILS 262 (896)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 262 (896)
+.|.|.+|+|||++|.++.... ...++++.-...++. ++...|.+.-......+ ...+....+.+.+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~--------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w---~t~E~~~~l~~~l~ 69 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL--------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHW---RTIETPRDLVSALK 69 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc--------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCc---eEeecHHHHHHHHH
Confidence 6799999999999999986542 235677776666654 34444443222112222 12222333444442
Q ss_pred C--CcEEEEEecc
Q 002655 263 R--KKFVLLLDDI 273 (896)
Q Consensus 263 ~--k~~LlVlDdv 273 (896)
. +.-.+++|.+
T Consensus 70 ~~~~~~~VLIDcl 82 (169)
T cd00544 70 ELDPGDVVLIDCL 82 (169)
T ss_pred hcCCCCEEEEEcH
Confidence 1 3447999986
No 500
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.05 E-value=0.084 Score=52.73 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHhh
Q 002655 177 EKNRGIIGLYGTGGVGKTTLLKQVNNK 203 (896)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (896)
....+.|.|+|++|+|||||++.+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 335688999999999999999998654
Done!