Query 002655
Match_columns 896
No_of_seqs 396 out of 4079
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 17:08:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002655.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1370-1374//hhsearch_pdb/002655hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 395.5 20.4 311 154-488 125-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 363.2 27.2 313 155-488 122-451 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 335.1 17.8 287 157-482 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 305.7 26.7 308 156-487 123-450 (591)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 191.9 19.7 326 509-868 443-838 (876)
6 4fmz_A Internalin; leucine ric 1.0 1 1 191.9 20.6 305 509-868 39-344 (347)
7 3oja_B Anopheles plasmodium-re 1.0 1 1 189.6 18.3 302 512-868 49-356 (597)
8 4eco_A Uncharacterized protein 1.0 1 1 189.2 17.6 321 512-868 247-598 (636)
9 3rgz_A Protein brassinosteroid 1.0 1 1 187.3 18.8 62 715-784 486-548 (768)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 185.5 17.9 125 512-640 489-628 (876)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=395.54 Aligned_cols=311 Identities=16% Similarity=0.157 Sum_probs=251.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHH--HHHHHHHCCCCCEEEEEEECCCC--CHH
Q ss_conf 02443134468899999996306-89950999993898819999999994--64332103998779999948999--988
Q 002655 154 ALERTVVGQESMLDQVWRCITDQ-EKNRGIIGLYGTGGVGKTTLLKQVNN--KFCIEQRQHHFDVVIWGVVSREP--KLD 228 (896)
Q Consensus 154 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~~~F~~~~wv~~s~~~--~~~ 228 (896)
|..+..+||+.++++|.++|... +...++|+|+||||+||||||+.+|+ +. +++.+|+.++|+++++.+ +..
T Consensus 125 p~~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~---~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 125 PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ---LIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp BCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS---TBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH---HHHCCCCCEEEEEECCCCCCCHH
T ss_conf 997760784179999999872515789628999869999889999999984069---87466995799997898787999
Q ss_pred HHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 999999987098953-----323469899999999992579-67999915678324100036867889995999942871
Q 002655 229 KIQDAIGKRIGLSAE-----SWMDKSLEEKALDISNILSRK-KFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSL 302 (896)
Q Consensus 229 ~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~IiiTtR~~ 302 (896)
.++..|+.+++.... .....+.+.+...+.+.++++ ||||||||||+...+ .+ + ...||+||||||+.
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~ 275 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDV 275 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBG
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CC----C-CCCCCEEEEECCCH
T ss_conf 999999999853755345555331469999999999976898489999799971441-54----3-26998899974977
Q ss_pred HHHCCCC-CCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 1002478-873388234795889999998617864479911799999999991996049999999843799932899999
Q 002655 303 DVCGSME-ADEKIEVKYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYAT 381 (896)
Q Consensus 303 ~v~~~~~-~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~ 381 (896)
.++..++ ....|++++|++++||+||.+.++... .++.+++++.+|+++|+|+||||+++|+.++.+ .|+..
T Consensus 276 ~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~- 348 (549)
T 2a5y_B 276 EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM- 348 (549)
T ss_dssp GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-
T ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC----HHHHH-
T ss_conf 99997088973898999898999999998744899--855689999999999599839999999984434----48999-
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCC--
Q ss_conf 98337988579973779968864018999613358984-----------50698999631635699999970--8863--
Q 002655 382 KVLSTSPEKFSGMEENVFARLKFSYDSLPNYIIRSCFL-----------YCSLFPEDYEVYKGDLIDYWTSE--GFVD-- 446 (896)
Q Consensus 382 ~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~~~-- 446 (896)
..+....+... ..++..++.+||++||. ++|.||+ |||+||+++.|+ ++.|+|+ ||+.
T Consensus 349 ~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~ 421 (549)
T 2a5y_B 349 AQLNNKLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSN 421 (549)
T ss_dssp HHHHHHHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-----
T ss_pred HHHHHHHHCCC--HHHHHHHHHCCCCCCCH-HHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCC
T ss_conf 87578761364--77789897516202267-999997526522336743235608997666----533110135500267
Q ss_pred -----HHHHHHHHHHHHHHCCCCCCC---CCCEEEEHHHHHHHHHHHHHH
Q ss_conf -----044456999999981342012---568387517898899999842
Q 002655 447 -----AFDEGYTIIGDLLRACLLEEV---NDNHVKMHDVIRDMALWIACK 488 (896)
Q Consensus 447 -----~~~~~~~~~~~L~~~~ll~~~---~~~~~~mhdli~~~~~~i~~~ 488 (896)
.++.+. ++++|+++||++.. ....|+|||++|++|++++..
T Consensus 422 ~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 422 EEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp --CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred CCCCCHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 78999999999-99999875883671479804999676999999999889
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=363.21 Aligned_cols=313 Identities=20% Similarity=0.293 Sum_probs=254.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCC--HHHHH
Q ss_conf 244313446889999999630689950999993898819999999994643321039-987799999489999--88999
Q 002655 155 LERTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQH-HFDVVIWGVVSREPK--LDKIQ 231 (896)
Q Consensus 155 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~-~F~~~~wv~~s~~~~--~~~~~ 231 (896)
..+.|+||+++++++.+.|...+.+.++|+|+||||+||||||++++++.. .... .++.++|+++++..+ ....+
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHS--LLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHH--HHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHH--HHHHHCCCEEEEEEECCCCCHHHHHHH
T ss_conf 986412579999999999861358877799991898888899999860756--788627881799997885726799999
Q ss_pred HHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCC
Q ss_conf 999987098953--323469899999999992579--6799991567832410003686788999599994287110024
Q 002655 232 DAIGKRIGLSAE--SWMDKSLEEKALDISNILSRK--KFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCGS 307 (896)
Q Consensus 232 ~~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~IiiTtR~~~v~~~ 307 (896)
..++..+..... .....+.+.....++..+.++ |+||||||||+...|..+ ++|++||+|||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHH
T ss_conf 9999986553033347887778999999999735678789999567997788763-------689789999277899876
Q ss_pred -CCCCCEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf -78873388234-7958899999986178644799117999999999919960499999998437999328999999833
Q 002655 308 -MEADEKIEVKY-LVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKVLS 385 (896)
Q Consensus 308 -~~~~~~~~l~~-L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~l~ 385 (896)
+.....+.+.+ |++++|++||...++... +...+.+.+|+++|+|+||||+++|++|+.+. ..|...+..+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHH
T ss_conf 3488437982588887889999998657981----34838899999984997799999999862480--57999999986
Q ss_pred CCCCCC-----CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 798857-----997377996886401899961335898450698999631635699999970886304445699999998
Q 002655 386 TSPEKF-----SGMEENVFARLKFSYDSLPNYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEGYTIIGDLLR 460 (896)
Q Consensus 386 ~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~L~~ 460 (896)
...+.. ....+.+..++.+||+.|++ +.|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----~~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----TEEVEDILQEFVN 420 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----HHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCCCCEECHHHHHHHHCCC-----HHHHHHHHHHHHH
T ss_conf 5044303465564467799999989986799-999999972813799751899999885898-----8899999999974
Q ss_pred CCCCCCCCCC---EEEEHHHHHHHHHHHHHH
Q ss_conf 1342012568---387517898899999842
Q 002655 461 ACLLEEVNDN---HVKMHDVIRDMALWIACK 488 (896)
Q Consensus 461 ~~ll~~~~~~---~~~mhdli~~~~~~i~~~ 488 (896)
++|++....+ .|+||+++|++++..+.+
T Consensus 421 ~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 421 KSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp TTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred CCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 4633896379811899668999998745067
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=335.09 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=229.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCHHHHHHHHH
Q ss_conf 43134468899999996306899509999938988199999999946433210399877-99999489999889999999
Q 002655 157 RTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQRQHHFDV-VIWGVVSREPKLDKIQDAIG 235 (896)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~ 235 (896)
+..+||+.+++++.++|...+ ..++|+|+||||+||||||+++|++.. ++.+|+. ++|+++++.++...++..++
T Consensus 128 k~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~r---V~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYK---VQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCH---HHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHHHHHH---HHHHCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 877892899999999974358-971899976999667999999997149---8874899389998289999999999999
Q ss_pred HHHCCCC---C-C-----CCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHH
Q ss_conf 8709895---3-3-----23469899999999992---579679999156783241000368678899959999428711
Q 002655 236 KRIGLSA---E-S-----WMDKSLEEKALDISNIL---SRKKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLD 303 (896)
Q Consensus 236 ~~l~~~~---~-~-----~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~IiiTtR~~~ 303 (896)
..++... . . ....+.+.....+++.+ .++|+||||||||+...|..+ + .||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH----C---CCEEEEEECCCHH
T ss_conf 99862272102200134679999999999999999850478879987186818999864----7---9829999443737
Q ss_pred HHCCCCCCCEEEEC------CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCHHH
Q ss_conf 00247887338823------479588999999861786447991179999999999199604999999984379-99328
Q 002655 304 VCGSMEADEKIEVK------YLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYK-KNPDE 376 (896)
Q Consensus 304 v~~~~~~~~~~~l~------~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~-~~~~~ 376 (896)
++..+.....+.++ +|+.+|||+||.+..+... .++..++ |+|+||||+++|+.|+.+ .+..+
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCH-------HHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHH
T ss_conf 998668970899468655689699999999999749988-------9999999---698999999999998488997999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999983379885799737799688640189996133-58984506989996316356999999708863044456999
Q 002655 377 WKYATKVLSTSPEKFSGMEENVFARLKFSYDSLPNYII-RSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEGYTII 455 (896)
Q Consensus 377 w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~ 455 (896)
|... ..+.+..+|.+||+.||+ +. |.||+|||+||+++.|+.+.++.+|+++| ++.+..++
T Consensus 347 W~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----eedAe~~L 408 (1221)
T 1vt4_I 347 WKHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDVMVVV 408 (1221)
T ss_dssp HHHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----SHHHHHHH
T ss_pred HHCC-------------CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC----HHHHHHHH
T ss_conf 8669-------------861899999999984889-99999999971779999877999998766778----89999999
Q ss_pred HHHHHCCCCCCC-CCCEEEEHHHHHHHH
Q ss_conf 999981342012-568387517898899
Q 002655 456 GDLLRACLLEEV-NDNHVKMHDVIRDMA 482 (896)
Q Consensus 456 ~~L~~~~ll~~~-~~~~~~mhdli~~~~ 482 (896)
++|+++||++.. ....|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 9999619889868999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=305.67 Aligned_cols=308 Identities=21% Similarity=0.318 Sum_probs=239.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH-CCCC-CEEEEEEECCCCCHHHHHHH
Q ss_conf 443134468899999996306899509999938988199999999946433210-3998-77999994899998899999
Q 002655 156 ERTVVGQESMLDQVWRCITDQEKNRGIIGLYGTGGVGKTTLLKQVNNKFCIEQR-QHHF-DVVIWGVVSREPKLDKIQDA 233 (896)
Q Consensus 156 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~~ 233 (896)
.+.||||+.+++++.+++.....+.++|+|+||||+||||||+.++++.. + ..+| +.++|++++.. +...+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHS---LLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHH---HHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHH---HHHHHCCCCEEEEECCCC-CHHHHHHH
T ss_conf 87140529999999999860368884699976998988999999983556---888528996599977877-66889999
Q ss_pred H---HHHHCCCC--CCCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHC
Q ss_conf 9---98709895--332346989999999999257--9679999156783241000368678899959999428711002
Q 002655 234 I---GKRIGLSA--ESWMDKSLEEKALDISNILSR--KKFVLLLDDIWQPIDLTELGIPLQSLNVSSKVVFTTRSLDVCG 306 (896)
Q Consensus 234 i---~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~~~~~~~gs~IiiTtR~~~v~~ 306 (896)
+ +..++... ......+.+.....+...+.+ +++||||||+|+...+..+ +.+++||+|||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHHHH
T ss_conf 99999985035565567998899999999999706799869998589987999876-------37986999898817777
Q ss_pred CCCCCCEEEE---CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 4788733882---3479588999999861786447991179999999999199604999999984379993289999998
Q 002655 307 SMEADEKIEV---KYLVHDEAWRLFQEKVGEATLRCHSDILELAQTLARECCGLPLALKTIGRAMAYKKNPDEWKYATKV 383 (896)
Q Consensus 307 ~~~~~~~~~l---~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~~~~ 383 (896)
.+. ...+++ ++|+.+++++||...++... ....+.+.+|+++|+|+|+||..+|++++.+ ...|...+..
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~ 344 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQ 344 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC--CHHHHHHHHH
T ss_conf 348-98268615889998999999998718983----1045999999999589837999999998448--4359999999
Q ss_pred HCCCCCC-----CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 3379885-----79973779968864018999613358984506989996316356999999708863044456999999
Q 002655 384 LSTSPEK-----FSGMEENVFARLKFSYDSLPNYIIRSCFLYCSLFPEDYEVYKGDLIDYWTSEGFVDAFDEGYTIIGDL 458 (896)
Q Consensus 384 l~~~~~~-----~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~L 458 (896)
+...... .......+..++..||+.||+ +.|.||++||+||+++.|+.+.+...|.++ .+.+..++++|
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----~~~~~~~l~~L 418 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----TEEVEDILQEF 418 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCCC-----HHHHHHHHHHH
T ss_conf 988689876511465437899999999986899-999999974556799850899999996658-----89999999999
Q ss_pred HHCCCCCCC---CCCEEEEHHHHHHHHHHHHH
Q ss_conf 981342012---56838751789889999984
Q 002655 459 LRACLLEEV---NDNHVKMHDVIRDMALWIAC 487 (896)
Q Consensus 459 ~~~~ll~~~---~~~~~~mhdli~~~~~~i~~ 487 (896)
++++|+... ....|+||++++++++....
T Consensus 419 ~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 419 VNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 85958688548985679976899999986535
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=191.90 Aligned_cols=326 Identities=14% Similarity=0.157 Sum_probs=211.6
Q ss_pred CCCCCCCCEEEECCCCCCCC------------------CCC-CC--CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEC
Q ss_conf 65675663064202567656------------------678-88--8998758981047533335311216997509963
Q 002655 509 KIKDWEGFKRISLMENNITS------------------LSA-IP--NCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNL 567 (896)
Q Consensus 509 ~~~~~~~l~~l~l~~~~~~~------------------~~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 567 (896)
.+..+++++.|.+.+|.+.. +|. +. .+++|++|.+++|.+....+..+..+++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 87569998789796886788746532233222222445874440255999778987189887527387737999899989
Q ss_pred CCCCCCC--CCCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 3644443--4781136987-------67599644898421453--32158878588614422432350001899745613
Q 002655 568 GFNIFLN--KLPSGLSSLI-------SLEHLDLSFTVIRELPE--EMKALVNLRYLNLEYVYLNRLPLQLLCNFTKLQAL 636 (896)
Q Consensus 568 ~~~~~~~--~lp~~l~~L~-------~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L 636 (896)
++|..+. .+|..++.+. +|++|++++|.+..+|. .++++++|+.|++++|.+..+| . ++++++|+.|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A-FGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C-CCTTSEESEE
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCH-H-HCCCCCCEEE
T ss_conf 6898765664617787523301556883199822894776187235515898898989799825621-2-2479850079
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC-CCEEEEEECCHHHHHHHHHCCC------------------------
Q ss_conf 235865788984110134685010663106768-7415799446043576431100------------------------
Q 002655 637 RMLGCSNYSGEEEDRVFFKDAEPFMKELLCLEN-LDLLSFTFDSWHAFETFLTFQK------------------------ 691 (896)
Q Consensus 637 ~l~~~~~~~~~~e~~~~~~~~~~~l~~L~~L~~-L~~l~i~~~~~~~~~~~~~~~~------------------------ 691 (896)
.+.++. +.. ....+..+++ |+.+.+..+....++..+....
T Consensus 601 ~Ls~N~-l~~-------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 601 KLDYNQ-IEE-------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp ECCSSC-CSC-------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred ECCCCC-CCC-------------CHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHH
T ss_conf 871871-250-------------358775251149899984997874764452255677788977088478864320000
Q ss_pred ----CCCCEEEEEECCCCCCCCCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf ----0026038896255799964545400016666587636785025540311124555214676368950158777778
Q 002655 692 ----LLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKEL 767 (896)
Q Consensus 692 ----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l 767 (896)
...+|+.|.+..+.-. .++...+..+++|+.|.++++....++...+.. ......++++|+.|+|++| .++.+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N-~L~~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFN-KLTSL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-TTSCCTTGGGCCEEECCSS-CCCCC
T ss_pred HCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCC-CCCCCCCCCCCCEEECCCC-CCCCC
T ss_conf 00135797688983199688-659788713898899989899688549678455-5334321487158988899-78665
Q ss_pred CC-CC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC------CCCCCCCCCCCCCCCCE
Q ss_conf 20-00--38997679672375631013688676300000125557652366046775------65543689889998238
Q 002655 768 TW-LV--FAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLE------NLESIYFDPLPFPQLKE 838 (896)
Q Consensus 768 ~~-l~--~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~~L~~ 838 (896)
|. +. .+++|+.|+|++| .+..++. ....+++|+.|.+++++ -...++.....+++|+.
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N-~L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYN-CFSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred HHHHHHCCCCCCCEEEECCC-CCCCCCH------------HHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 27762442798698990899-7876105------------6615999889988799776656324448688836998788
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCEEEECCH
Q ss_conf 976388999999999977899522897106
Q 002655 839 IEVTGCPKLKKLPLDSTRAMGHKIVVKGNI 868 (896)
Q Consensus 839 L~i~~c~~L~~Lp~~~~~~~l~~l~i~~~~ 868 (896)
|.+.+|. +..+|.... ++|+.+.+.+++
T Consensus 811 L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 811 LQIGSND-IRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp EECCSSC-CCBCCSCCC-SSSCEEECCSCT
T ss_pred EECCCCC-CCCCCHHHC-CCCCEEECCCCC
T ss_conf 9887997-874087662-877889997998
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=1.00 E-value=1 Score=191.88 Aligned_cols=305 Identities=18% Similarity=0.200 Sum_probs=225.9
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 65675663064202567656678888998758981047533335311216997509963364444347811369876759
Q 002655 509 KIKDWEGFKRISLMENNITSLSAIPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKLPSGLSSLISLEH 588 (896)
Q Consensus 509 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~ 588 (896)
....+++++.+.+.++.+..++.+..+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .+..+++|++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRE 114 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSE
T ss_pred CCHHCCCCCEEEEECCCCCCCHHHHHCCCCCEEECCCCCCCCCHH--HHCCCCCCEEECCCC-CCCCCH-HHCCCCCCCE
T ss_conf 300103446899858864463555304886589765984456444--406886888984388-656706-7707885788
Q ss_pred EECCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 96448984214533215887858861442-24323500018997456132358657889841101346850106631067
Q 002655 589 LDLSFTVIRELPEEMKALVNLRYLNLEYV-YLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCL 667 (896)
Q Consensus 589 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~-~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~e~~~~~~~~~~~l~~L~~L 667 (896)
|++++|.+..+|. +..+++|+.|++.+| ....++. +..+++|++|.+.+|. +.. +..+..+
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~-~~~--------------~~~~~~l 176 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK-VKD--------------VTPIANL 176 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSC-CCC--------------CGGGGGC
T ss_pred EECCCCCCCCCHH-HCCCCCEEEEECCCCCCCCCCCC--HHHCCCCCEEEECCCC-CCC--------------CHHHCCC
T ss_conf 8886885667630-24687601897779987443601--2317877478816888-677--------------6100247
Q ss_pred CCCCEEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 68741579944604357643110000260388962557999645454000166665876367850255403111245552
Q 002655 668 ENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQ 747 (896)
Q Consensus 668 ~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 747 (896)
++|+.+.+..+....... ...+++++.+.+..+... ... .+..+++|+.|.+++|....+++ +
T Consensus 177 ~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~-~~~--~~~~~~~L~~L~l~~n~l~~~~~--~-------- 239 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQIT-DIT--PVANMTRLNSLKIGNNKITDLSP--L-------- 239 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSSCCCCCGG--G--------
T ss_pred CCCCEEECCCCCCCCCCC----CCCCCCCCEEECCCCCCC-CCC--HHHCCCCCCEEECCCCCCCCCCC--H--------
T ss_conf 878889814985665403----167775206612247777-885--34447868979855985678722--2--------
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 14676368950158777778200038997679672375631013688676300000125557652366046775655436
Q 002655 748 RGFRSLHTVFISDCSRLKELTWLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLESIY 827 (896)
Q Consensus 748 ~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 827 (896)
..+++|+.|++++| .++.++.+..+++|+.|++++| .++.++. ...+++|+.|.+++|.-....+
T Consensus 240 ~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 240 ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDISV-------------LNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG-------------GGGCTTCSEEECCSSCCCGGGH
T ss_pred HCCCCCCEEECCCC-CCCCCHHHHCCCCCCEEECCCC-CCCCCHH-------------HCCCCCCCEEECCCCCCCCCCH
T ss_conf 01888898979887-5587856716897678980298-5688854-------------5589988889776996877596
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCH
Q ss_conf 89889998238976388999999999977899522897106
Q 002655 828 FDPLPFPQLKEIEVTGCPKLKKLPLDSTRAMGHKIVVKGNI 868 (896)
Q Consensus 828 ~~~~~~~~L~~L~i~~c~~L~~Lp~~~~~~~l~~l~i~~~~ 868 (896)
.....+++|+.|.+.+|+ ++.++.....++|+.+.+.+++
T Consensus 305 ~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp HHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred HHHHCCCCCCEEECCCCC-CCCCCCHHHHHCCCEEEHHHHC
T ss_conf 676266668789754974-4566073352204511011220
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=189.56 Aligned_cols=302 Identities=17% Similarity=0.179 Sum_probs=206.5
Q ss_pred CCCCCEEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCE
Q ss_conf 75663064202567656678--888998758981047533335311216997509963364444347-811369876759
Q 002655 512 DWEGFKRISLMENNITSLSA--IPNCPHLRTLLLYRNRISMITDGFFQFMPSLKVLNLGFNIFLNKL-PSGLSSLISLEH 588 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~l-p~~l~~L~~L~~ 588 (896)
.+.+++.+.+.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCE
T ss_conf 6788618983389778769898802899768989899799989578607898888989799-089989788758999988
Q ss_pred EECCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 964489842145332-1588785886144224323500018997456132358657889841101346850106631067
Q 002655 589 LDLSFTVIRELPEEM-KALVNLRYLNLEYVYLNRLPLQLLCNFTKLQALRMLGCSNYSGEEEDRVFFKDAEPFMKELLCL 667 (896)
Q Consensus 589 L~l~~~~i~~lp~~i-~~l~~L~~L~l~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~e~~~~~~~~~~~l~~L~~L 667 (896)
|++++|.+..+|..+ +++++|++|++++|.+..+++..++++++|++|.+.++ .+... .+..+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~---------------~~~~l 191 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHV---------------DLSLI 191 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBC---------------CGGGC
T ss_pred EEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEECCCC-CCCCC---------------CHHHH
T ss_conf 974389999778787646988788984689689877555522875737889688-78876---------------85660
Q ss_pred CCCCEEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 68741579944604357643110000260388962557999645454000166665876367850255403111245552
Q 002655 668 ENLDLLSFTFDSWHAFETFLTFQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQ 747 (896)
Q Consensus 668 ~~L~~l~i~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~ 747 (896)
+.|+.+.+..+.... ......++.|.+..+.. .... ....++|+.|.++++.... +.++.
T Consensus 192 ~~L~~L~l~~n~l~~-------l~~~~~L~~L~ls~n~l-~~~~---~~~~~~L~~L~L~~n~l~~--~~~l~------- 251 (597)
T 3oja_B 192 PSLFHANVSYNLLST-------LAIPIAVEELDASHNSI-NVVR---GPVNVELTILKLQHNNLTD--TAWLL------- 251 (597)
T ss_dssp TTCSEEECCSSCCSE-------EECCTTCSEEECCSSCC-CEEE---CSCCSCCCEEECCSSCCCC--CGGGG-------
T ss_pred HHHHHHHCCCCCCCC-------CCCCCHHHEEECCCCCC-CCCC---CCCCCCCCEEECCCCCCCC--CHHHC-------
T ss_conf 146654201474433-------35773042034467855-6556---6557878889898999999--75662-------
Q ss_pred CCCCCCCEEEECCCCCCCCC-C-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 14676368950158777778-2-000389976796723756310136886763000001255576523660467756554
Q 002655 748 RGFRSLHTVFISDCSRLKEL-T-WLVFAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQNFLAELKFLCLKDLENLES 825 (896)
Q Consensus 748 ~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 825 (896)
.+++|+.|++++|. +..+ + .++.+++|+.|++++| .+..++. ....+|+|+.|.+++| .+..
T Consensus 252 -~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~------------~~~~l~~L~~L~Ls~N-~l~~ 315 (597)
T 3oja_B 252 -NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVALNL------------YGQPIPTLKVLDLSHN-HLLH 315 (597)
T ss_dssp -GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTS-CCCEEEC------------SSSCCTTCCEEECCSS-CCCC
T ss_pred -CCCCCCEEECCCCC-CCCCCHHHHCCCCCCCEEECCCC-CCCCCCC------------CCCCCCCCCEEECCCC-CCCC
T ss_conf -58988887897996-58879778507558888899799-8887774------------3246998838989899-8885
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCH
Q ss_conf 3689889998238976388999999999977899522897106
Q 002655 826 IYFDPLPFPQLKEIEVTGCPKLKKLPLDSTRAMGHKIVVKGNI 868 (896)
Q Consensus 826 l~~~~~~~~~L~~L~i~~c~~L~~Lp~~~~~~~l~~l~i~~~~ 868 (896)
++.....+++|+.|.+.+|+ ++.+|.... ++|+.+.+.+++
T Consensus 316 i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~L~~L~l~~N~ 356 (597)
T 3oja_B 316 VERNQPQFDRLENLYLDHNS-IVTLKLSTH-HTLKNLTLSHND 356 (597)
T ss_dssp CGGGHHHHTTCSEEECCSSC-CCCCCCCTT-CCCSEEECCSSC
T ss_pred CCCCCCCCCCCCEEECCCCC-CCCCCHHHC-CCCCEEEEECCC
T ss_conf 58210148988989898997-898692013-998989923989
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=189.17 Aligned_cols=321 Identities=15% Similarity=0.219 Sum_probs=172.9
Q ss_pred CCCCCEEEECCCCCCCC-CC-CCCCCCCCCEEECCCCC-CCC--CCCHHHCCC------CCCCEEECCCCCCCCCCCC--
Q ss_conf 75663064202567656-67-88889987589810475-333--353112169------9750996336444434781--
Q 002655 512 DWEGFKRISLMENNITS-LS-AIPNCPHLRTLLLYRNR-ISM--ITDGFFQFM------PSLKVLNLGFNIFLNKLPS-- 578 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~l------~~L~~L~L~~~~~~~~lp~-- 578 (896)
.+++++.+.+.+|.+.. +| .+..+++|++|++++|. ++. +|.. +..+ ++|++|++++| .+..+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSCCCHH
T ss_pred CCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHH-HHHHHCCCCCCCCCEEECCCC-CCCCCCCHH
T ss_conf 468788898048857762838883499978897847988766533578-875430465788888989799-377667655
Q ss_pred CCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 1369876759964489842-14533215887858861442243235000189974-561323586578898411013468
Q 002655 579 GLSSLISLEHLDLSFTVIR-ELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTK-LQALRMLGCSNYSGEEEDRVFFKD 656 (896)
Q Consensus 579 ~l~~L~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~e~~~~~~~ 656 (896)
.++.+++|++|++++|.+. .+| .++.+++|+.|++++|.+..+|.. +..+++ |++|.+.++. +..
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~-l~~---------- 391 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNK-LKY---------- 391 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSC-CSS----------
T ss_pred HHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCCCCCHH-HHHHCCCCCEEECCCCC-CCC----------
T ss_conf 54257888989690880705166-647889889898989940303375-65102368689852982-754----------
Q ss_pred CCHHHHHHCC--CCCCCEEEEEECCHHHHH-HHHH----CCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCEEEECCC
Q ss_conf 5010663106--768741579944604357-6431----10000260388962557999645454000166665876367
Q 002655 657 AEPFMKELLC--LENLDLLSFTFDSWHAFE-TFLT----FQKLLSCTESLELTKLYTPMSLNVLPLAYMKHLKNFLIQNC 729 (896)
Q Consensus 657 ~~~~l~~L~~--L~~L~~l~i~~~~~~~~~-~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~i~~~ 729 (896)
....+.. +++|+.+.+..+...... ..+. ......+|+.|.+..+.-. .++...+..+++|+.|.++++
T Consensus 392 ---lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 392 ---IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp ---CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred ---CCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCC
T ss_conf ---4665533345766889774885788652442002201125898888977279668-678788715898898989799
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-CC--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8502554031112455521467636895015877777820-00--38997679672375631013688676300000125
Q 002655 730 AFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELTW-LV--FAPNLKNIDVQNCNNMEEIISPGKLSEVSEIKERQ 806 (896)
Q Consensus 730 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~--~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 806 (896)
....++...+... ......+++|+.|++++| .++.+|. +. .+++|+.|++++| .++.++. ..
T Consensus 468 ~l~~i~~~~~~~~-~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~------------~~ 532 (636)
T 4eco_A 468 MLTEIPKNSLKDE-NENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT------------QP 532 (636)
T ss_dssp CCSBCCSSSSEET-TEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCC------------GG
T ss_pred CCCCCCHHHHCCC-CCCCCCCCCCCEEECCCC-CCCCCCHHHHHCCCCCCCEEECCCC-CCCCCCH------------HH
T ss_conf 7887397884044-001221477338989699-3881685453445887698989899-8877682------------35
Q ss_pred CCCCCCCEEECCCC------CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCH
Q ss_conf 55765236604677------565543689889998238976388999999999977899522897106
Q 002655 807 NFLAELKFLCLKDL------ENLESIYFDPLPFPQLKEIEVTGCPKLKKLPLDSTRAMGHKIVVKGNI 868 (896)
Q Consensus 807 ~~~~~L~~L~l~~c------~~L~~l~~~~~~~~~L~~L~i~~c~~L~~Lp~~~~~~~l~~l~i~~~~ 868 (896)
..+++|+.|.++++ .-...++.....+++|+.|++.+|. ++.+|.... ++|+.+.+.+++
T Consensus 533 ~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSCT
T ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCC-CCCCCHHHH-CCCCEEECCCCC
T ss_conf 308887878898886656673121273778569987889898994-770597683-867899876998
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=187.34 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=24.2
Q ss_pred HHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCEEEEECC
Q ss_conf 000166665876367850255403111245552146763689501587777782-0003899767967237
Q 002655 715 LAYMKHLKNFLIQNCAFEELKIENAVEIQNLVQRGFRSLHTVFISDCSRLKELT-WLVFAPNLKNIDVQNC 784 (896)
Q Consensus 715 l~~~~~L~~L~i~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c 784 (896)
+..+++|+.|++++|......+.++. .+++|+.|++++|.....+| .++.+++|+.|++++|
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~--------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIG--------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGG--------GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHH--------CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC
T ss_conf 81699899897539951896876885--------6899998989789433748877708898998989888
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=185.55 Aligned_cols=125 Identities=24% Similarity=0.474 Sum_probs=50.5
Q ss_pred CCCCCEEEECCCCCCCC-CCC-CCCCCCCCEEECCCCC-CCC--CCCHHHC-------CCCCCCEEECCCCCCCCCCCC-
Q ss_conf 75663064202567656-678-8889987589810475-333--3531121-------699750996336444434781-
Q 002655 512 DWEGFKRISLMENNITS-LSA-IPNCPHLRTLLLYRNR-ISM--ITDGFFQ-------FMPSLKVLNLGFNIFLNKLPS- 578 (896)
Q Consensus 512 ~~~~l~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~~~~-l~~--~~~~~~~-------~l~~L~~L~L~~~~~~~~lp~- 578 (896)
.+++++.|.+.+|.+.. +|. +..+++|+.|++++|. ++. +|.. +. .+++|++|++++| .+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBCCCH
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHH-HHHHHHCCCCCCCCCEEEEECC-CCCCCCCH
T ss_conf 599977898718988752738773799989998968987656646177-8752330155688319982289-47761872
Q ss_pred -CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEEECCC
Q ss_conf -136987675996448984214533215887858861442243235000189974-56132358
Q 002655 579 -GLSSLISLEHLDLSFTVIRELPEEMKALVNLRYLNLEYVYLNRLPLQLLCNFTK-LQALRMLG 640 (896)
Q Consensus 579 -~l~~L~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~lp~~~i~~l~~-L~~L~l~~ 640 (896)
.++.+++|++|++++|.+..+| .++++++|+.|++++|.+..+|.. +.++++ |+.|.+.+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSH 628 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCS
T ss_pred HHHHCCCCCCEEECCCCCCCCCH-HHCCCCCCEEEECCCCCCCCCHHH-HHHCCCCCCEEECCC
T ss_conf 35515898898989799825621-224798500798718712503587-752511498999849
Done!